Query 039206
Match_columns 645
No_of_seqs 278 out of 362
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 7.5E-58 1.6E-62 475.0 20.8 242 367-609 11-279 (290)
2 PF07899 Frigida: Frigida-like 99.9 1.5E-23 3.2E-28 218.6 9.1 111 535-645 87-198 (290)
3 COG1196 Smc Chromosome segrega 99.9 5.7E-19 1.2E-23 216.4 44.9 417 39-520 671-1110(1163)
4 TIGR02169 SMC_prok_A chromosom 99.8 5.9E-15 1.3E-19 181.3 42.8 417 39-521 678-1119(1164)
5 TIGR02168 SMC_prok_B chromosom 99.7 1.1E-12 2.5E-17 161.0 44.5 154 313-517 966-1130(1179)
6 KOG0018 Structural maintenance 99.5 3.5E-11 7.6E-16 139.1 34.5 153 317-524 934-1099(1141)
7 KOG0996 Structural maintenance 99.4 2E-09 4.2E-14 125.7 42.5 420 38-512 781-1231(1293)
8 KOG0933 Structural maintenance 99.4 1.9E-09 4E-14 124.1 39.5 366 81-514 737-1120(1174)
9 KOG0964 Structural maintenance 99.3 3.2E-08 6.9E-13 113.7 43.2 412 42-520 664-1139(1200)
10 TIGR02169 SMC_prok_A chromosom 99.3 1.8E-08 3.8E-13 124.4 45.1 104 37-143 683-788 (1164)
11 TIGR02168 SMC_prok_B chromosom 99.3 2E-08 4.3E-13 123.7 44.6 275 78-359 719-1005(1179)
12 PRK02224 chromosome segregatio 99.3 5E-08 1.1E-12 117.6 46.8 38 109-146 408-445 (880)
13 PRK02224 chromosome segregatio 99.3 3.6E-08 7.8E-13 118.8 43.1 20 36-55 315-334 (880)
14 COG1196 Smc Chromosome segrega 99.1 2.5E-06 5.5E-11 105.8 47.3 234 98-335 231-469 (1163)
15 TIGR00606 rad50 rad50. This fa 99.0 2.2E-05 4.7E-10 98.7 51.0 104 109-212 825-935 (1311)
16 KOG0250 DNA repair protein RAD 99.0 7.2E-05 1.6E-09 88.5 47.6 40 478-517 991-1030(1074)
17 TIGR00606 rad50 rad50. This fa 99.0 2.2E-05 4.8E-10 98.6 46.8 170 85-255 744-929 (1311)
18 KOG0161 Myosin class II heavy 98.9 1.7E-05 3.6E-10 99.8 44.3 206 75-283 905-1110(1930)
19 PRK01156 chromosome segregatio 98.9 3E-05 6.4E-10 94.0 44.2 33 313-345 523-555 (895)
20 PF10174 Cast: RIM-binding pro 98.9 2.5E-05 5.5E-10 91.6 41.1 266 28-294 60-381 (775)
21 KOG0161 Myosin class II heavy 98.9 5.4E-05 1.2E-09 95.4 46.2 41 439-480 1327-1370(1930)
22 PRK01156 chromosome segregatio 98.9 0.00023 5E-09 86.3 51.0 13 59-71 368-380 (895)
23 PRK03918 chromosome segregatio 98.8 5.9E-05 1.3E-09 91.2 43.8 13 78-90 207-219 (880)
24 PF00261 Tropomyosin: Tropomyo 98.8 2.7E-06 5.8E-11 87.3 27.5 117 81-207 46-162 (237)
25 PRK04778 septation ring format 98.8 7.8E-05 1.7E-09 86.0 40.0 132 223-359 350-495 (569)
26 KOG0250 DNA repair protein RAD 98.7 6.2E-05 1.3E-09 89.0 37.2 184 136-335 276-466 (1074)
27 KOG0996 Structural maintenance 98.7 0.00014 2.9E-09 86.3 37.9 97 226-322 477-573 (1293)
28 PF10174 Cast: RIM-binding pro 98.7 0.00056 1.2E-08 80.5 43.2 131 164-301 286-423 (775)
29 PF07888 CALCOCO1: Calcium bin 98.6 0.0014 3E-08 73.9 42.4 43 195-237 306-348 (546)
30 PF00038 Filament: Intermediat 98.6 0.00035 7.6E-09 74.3 36.1 46 59-107 52-97 (312)
31 KOG0976 Rho/Rac1-interacting s 98.6 0.002 4.3E-08 73.8 40.9 47 281-327 327-373 (1265)
32 KOG0995 Centromere-associated 98.6 0.0018 4E-08 72.3 40.2 200 40-242 233-481 (581)
33 PF07888 CALCOCO1: Calcium bin 98.5 0.0016 3.4E-08 73.4 39.4 170 190-359 280-457 (546)
34 COG1340 Uncharacterized archae 98.5 0.001 2.2E-08 69.5 34.9 88 209-296 160-247 (294)
35 PF05701 WEMBL: Weak chloropla 98.5 0.0026 5.7E-08 72.6 40.3 14 26-39 93-106 (522)
36 PHA02562 46 endonuclease subun 98.5 0.0001 2.2E-09 84.6 28.8 71 223-293 332-402 (562)
37 COG1340 Uncharacterized archae 98.4 0.0027 5.9E-08 66.3 35.6 56 96-151 45-100 (294)
38 PRK04778 septation ring format 98.4 0.0067 1.4E-07 70.1 42.3 19 34-52 21-39 (569)
39 PF00038 Filament: Intermediat 98.4 0.0035 7.5E-08 66.7 36.9 59 235-293 195-253 (312)
40 COG0419 SbcC ATPase involved i 98.4 0.017 3.8E-07 70.4 47.8 57 478-537 817-886 (908)
41 KOG0933 Structural maintenance 98.4 0.0041 8.8E-08 73.2 38.3 37 562-598 1075-1113(1174)
42 KOG4674 Uncharacterized conser 98.4 0.012 2.5E-07 74.1 44.4 108 92-199 1229-1341(1822)
43 PF05701 WEMBL: Weak chloropla 98.4 0.011 2.5E-07 67.5 46.3 71 181-251 283-353 (522)
44 KOG0995 Centromere-associated 98.3 0.0046 9.9E-08 69.3 36.2 138 51-191 215-358 (581)
45 TIGR03185 DNA_S_dndD DNA sulfu 98.3 0.0048 1E-07 72.5 38.2 82 101-182 204-286 (650)
46 PHA02562 46 endonuclease subun 98.3 0.00052 1.1E-08 78.8 29.6 69 81-152 177-245 (562)
47 KOG0977 Nuclear envelope prote 98.3 0.0029 6.3E-08 71.3 33.3 150 26-181 29-192 (546)
48 KOG4674 Uncharacterized conser 98.3 0.027 5.8E-07 71.0 43.9 146 190-335 1164-1330(1822)
49 KOG0964 Structural maintenance 98.2 0.0079 1.7E-07 70.6 36.1 13 461-473 626-638 (1200)
50 KOG1029 Endocytic adaptor prot 98.2 0.0099 2.2E-07 68.2 35.9 25 34-58 316-340 (1118)
51 PRK04863 mukB cell division pr 98.1 0.019 4.2E-07 72.6 40.2 10 455-464 777-786 (1486)
52 KOG0971 Microtubule-associated 98.0 0.029 6.3E-07 65.5 35.2 148 184-335 323-478 (1243)
53 KOG0977 Nuclear envelope prote 98.0 0.0035 7.7E-08 70.7 27.5 96 37-135 94-191 (546)
54 PF05667 DUF812: Protein of un 98.0 0.015 3.1E-07 67.3 32.2 55 199-253 425-479 (594)
55 COG1579 Zn-ribbon protein, pos 98.0 0.0029 6.4E-08 64.6 23.3 26 284-309 149-174 (239)
56 PF12128 DUF3584: Protein of u 97.9 0.16 3.6E-06 63.8 54.0 25 311-335 770-794 (1201)
57 COG1579 Zn-ribbon protein, pos 97.9 0.0041 8.8E-08 63.6 23.2 27 101-127 33-59 (239)
58 PF15070 GOLGA2L5: Putative go 97.9 0.11 2.4E-06 60.3 37.2 77 190-266 164-240 (617)
59 PF09726 Macoilin: Transmembra 97.9 0.016 3.4E-07 68.2 30.3 33 226-258 543-575 (697)
60 PF01576 Myosin_tail_1: Myosin 97.8 3.3E-06 7.2E-11 101.2 0.0 213 59-274 185-423 (859)
61 KOG0963 Transcription factor/C 97.8 0.098 2.1E-06 59.5 34.5 202 43-249 53-270 (629)
62 PF05667 DUF812: Protein of un 97.8 0.053 1.2E-06 62.7 33.4 77 211-287 451-529 (594)
63 KOG0612 Rho-associated, coiled 97.8 0.18 3.9E-06 61.1 38.4 99 85-183 494-592 (1317)
64 PRK04863 mukB cell division pr 97.8 0.26 5.7E-06 62.7 42.0 39 226-264 440-478 (1486)
65 KOG1029 Endocytic adaptor prot 97.8 0.071 1.5E-06 61.5 32.4 32 299-330 550-581 (1118)
66 PF01576 Myosin_tail_1: Myosin 97.8 5.1E-06 1.1E-10 99.6 0.0 83 159-241 322-404 (859)
67 PF12128 DUF3584: Protein of u 97.7 0.32 6.9E-06 61.3 43.4 25 18-42 183-207 (1201)
68 KOG0018 Structural maintenance 97.7 0.051 1.1E-06 64.9 30.9 9 412-420 580-588 (1141)
69 KOG4643 Uncharacterized coiled 97.6 0.3 6.5E-06 58.1 41.8 111 231-345 477-587 (1195)
70 COG4942 Membrane-bound metallo 97.6 0.17 3.7E-06 55.7 30.8 7 471-477 320-326 (420)
71 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.21 4.6E-06 58.8 34.0 67 59-129 187-253 (650)
72 PF09726 Macoilin: Transmembra 97.6 0.082 1.8E-06 62.3 30.1 60 89-148 457-516 (697)
73 KOG0971 Microtubule-associated 97.5 0.34 7.3E-06 57.1 43.8 35 120-154 325-359 (1243)
74 PF06160 EzrA: Septation ring 97.5 0.34 7.5E-06 56.0 41.4 41 292-332 352-392 (560)
75 COG4942 Membrane-bound metallo 97.5 0.25 5.5E-06 54.4 31.7 45 99-143 59-103 (420)
76 KOG4673 Transcription factor T 97.4 0.37 8E-06 55.3 39.1 155 78-235 409-565 (961)
77 PF06160 EzrA: Septation ring 97.4 0.4 8.7E-06 55.5 42.2 141 31-174 61-235 (560)
78 KOG0994 Extracellular matrix g 97.4 0.57 1.2E-05 56.5 38.0 69 191-259 1582-1650(1758)
79 KOG0946 ER-Golgi vesicle-tethe 97.4 0.29 6.4E-06 57.1 30.9 188 75-262 640-840 (970)
80 KOG0612 Rho-associated, coiled 97.4 0.66 1.4E-05 56.5 36.0 32 82-113 498-529 (1317)
81 KOG4643 Uncharacterized coiled 97.4 0.59 1.3E-05 55.8 40.3 66 195-260 396-461 (1195)
82 KOG0979 Structural maintenance 97.4 0.44 9.6E-06 56.9 32.5 59 478-536 963-1040(1072)
83 PF12718 Tropomyosin_1: Tropom 97.4 0.04 8.7E-07 52.3 20.0 135 85-240 7-141 (143)
84 KOG0994 Extracellular matrix g 97.3 0.78 1.7E-05 55.4 37.6 112 206-317 1562-1673(1758)
85 PF05483 SCP-1: Synaptonemal c 97.2 0.65 1.4E-05 53.4 41.6 191 59-255 195-397 (786)
86 KOG0978 E3 ubiquitin ligase in 97.2 0.74 1.6E-05 53.8 39.5 52 54-108 284-337 (698)
87 KOG0963 Transcription factor/C 97.2 0.72 1.6E-05 52.7 31.8 145 34-187 58-218 (629)
88 KOG0979 Structural maintenance 97.1 0.54 1.2E-05 56.3 29.5 110 163-272 246-355 (1072)
89 KOG1003 Actin filament-coating 97.0 0.4 8.8E-06 47.3 26.8 39 165-203 88-126 (205)
90 KOG4673 Transcription factor T 97.0 1 2.3E-05 51.7 34.0 189 86-283 403-600 (961)
91 KOG0980 Actin-binding protein 97.0 1.3 2.9E-05 52.3 33.8 23 578-600 878-900 (980)
92 PRK09039 hypothetical protein; 97.0 0.19 4.1E-06 54.6 22.9 7 140-146 52-58 (343)
93 COG5185 HEC1 Protein involved 96.9 0.82 1.8E-05 50.5 26.7 44 112-155 322-365 (622)
94 KOG0976 Rho/Rac1-interacting s 96.9 1.4 3E-05 51.5 40.0 90 10-108 66-157 (1265)
95 TIGR02680 conserved hypothetic 96.9 1.9 4.2E-05 55.0 34.3 22 456-478 1117-1138(1353)
96 KOG0980 Actin-binding protein 96.8 1.7 3.6E-05 51.5 31.0 11 487-497 720-730 (980)
97 PRK09039 hypothetical protein; 96.8 0.22 4.8E-06 54.1 22.2 23 36-58 40-62 (343)
98 PF15619 Lebercilin: Ciliary p 96.8 0.54 1.2E-05 47.0 23.1 83 59-144 17-99 (194)
99 COG4372 Uncharacterized protei 96.8 1 2.3E-05 48.6 31.8 60 81-140 70-129 (499)
100 TIGR02680 conserved hypothetic 96.7 2.2 4.7E-05 54.6 33.1 23 36-58 736-758 (1353)
101 PF10473 CENP-F_leu_zip: Leuci 96.7 0.51 1.1E-05 44.6 20.7 77 167-250 12-88 (140)
102 PF15070 GOLGA2L5: Putative go 96.7 2 4.2E-05 50.3 34.5 170 106-275 87-256 (617)
103 PF10473 CENP-F_leu_zip: Leuci 96.6 0.64 1.4E-05 44.0 21.1 62 189-250 20-81 (140)
104 KOG1003 Actin filament-coating 96.6 0.87 1.9E-05 45.0 26.7 28 258-285 160-187 (205)
105 PF08317 Spc7: Spc7 kinetochor 96.5 0.36 7.9E-06 52.0 20.8 47 101-147 151-197 (325)
106 PF13851 GAS: Growth-arrest sp 96.4 1.1 2.4E-05 45.0 22.5 46 222-267 87-132 (201)
107 COG3883 Uncharacterized protei 96.4 1.6 3.4E-05 45.5 27.6 7 164-170 133-139 (265)
108 PRK11281 hypothetical protein; 96.4 4.3 9.4E-05 50.6 31.3 91 59-152 78-181 (1113)
109 PF05622 HOOK: HOOK protein; 96.3 0.001 2.2E-08 78.9 0.0 40 190-229 485-524 (713)
110 smart00787 Spc7 Spc7 kinetocho 96.3 1.7 3.7E-05 46.6 24.1 23 122-144 72-94 (312)
111 PF05483 SCP-1: Synaptonemal c 96.3 3.2 7E-05 48.0 43.6 119 184-309 448-566 (786)
112 COG4477 EzrA Negative regulato 96.2 3.1 6.8E-05 47.0 40.4 42 11-52 6-53 (570)
113 KOG0946 ER-Golgi vesicle-tethe 96.1 3 6.4E-05 49.2 26.2 49 75-123 668-716 (970)
114 PF09730 BicD: Microtubule-ass 96.1 4.5 9.7E-05 47.9 43.1 26 395-422 457-482 (717)
115 PF13870 DUF4201: Domain of un 96.1 1.6 3.5E-05 42.7 21.9 94 203-296 45-138 (177)
116 KOG0978 E3 ubiquitin ligase in 96.1 4.4 9.5E-05 47.6 40.9 18 314-331 575-592 (698)
117 PF05557 MAD: Mitotic checkpoi 95.9 0.0059 1.3E-07 72.6 4.1 31 370-402 546-576 (722)
118 PF05622 HOOK: HOOK protein; 95.9 0.0021 4.5E-08 76.3 0.0 80 75-154 243-328 (713)
119 PF05911 DUF869: Plant protein 95.9 5 0.00011 48.0 27.5 21 313-333 741-761 (769)
120 PF05557 MAD: Mitotic checkpoi 95.9 0.036 7.9E-07 65.9 10.2 130 163-295 390-535 (722)
121 PF14662 CCDC155: Coiled-coil 95.8 2.2 4.8E-05 42.2 27.1 109 185-300 66-174 (193)
122 TIGR00634 recN DNA repair prot 95.8 0.89 1.9E-05 52.7 21.0 40 109-148 164-203 (563)
123 PF08317 Spc7: Spc7 kinetochor 95.8 3.6 7.8E-05 44.4 29.2 10 336-345 276-285 (325)
124 KOG0962 DNA repair protein RAD 95.8 8.1 0.00018 48.3 39.6 21 163-183 883-903 (1294)
125 KOG0999 Microtubule-associated 95.7 4.9 0.00011 45.5 31.5 66 220-296 155-220 (772)
126 KOG0962 DNA repair protein RAD 95.7 8.4 0.00018 48.1 38.9 55 174-228 873-927 (1294)
127 TIGR01843 type_I_hlyD type I s 95.5 4.8 0.0001 44.2 25.0 18 313-330 254-271 (423)
128 PF13851 GAS: Growth-arrest sp 95.5 3.1 6.7E-05 41.8 24.1 52 101-152 29-80 (201)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.3 2.4 5.3E-05 39.5 18.3 19 317-335 103-121 (132)
130 PF05911 DUF869: Plant protein 95.2 9.6 0.00021 45.7 30.6 8 343-350 740-747 (769)
131 TIGR01843 type_I_hlyD type I s 95.1 6.4 0.00014 43.2 24.1 25 127-151 81-105 (423)
132 TIGR01005 eps_transp_fam exopo 95.1 2.9 6.3E-05 50.1 22.8 62 91-152 200-269 (754)
133 COG2433 Uncharacterized conser 95.0 0.73 1.6E-05 52.6 16.0 13 59-71 357-369 (652)
134 PF09789 DUF2353: Uncharacteri 95.0 6.3 0.00014 42.3 24.3 42 96-137 6-47 (319)
135 PRK10246 exonuclease subunit S 94.9 14 0.00031 46.2 41.3 13 378-390 889-901 (1047)
136 PF04156 IncA: IncA protein; 94.9 2 4.4E-05 42.3 17.5 19 223-241 132-150 (191)
137 PRK10869 recombination and rep 94.9 4.1 8.9E-05 47.2 22.3 31 478-508 432-462 (553)
138 PF04849 HAP1_N: HAP1 N-termin 94.8 6.7 0.00015 41.8 26.1 106 188-296 162-267 (306)
139 TIGR03007 pepcterm_ChnLen poly 94.7 6.3 0.00014 44.7 23.2 10 336-345 369-378 (498)
140 KOG4809 Rab6 GTPase-interactin 94.6 10 0.00022 43.0 29.3 27 394-420 611-637 (654)
141 PRK11281 hypothetical protein; 94.6 17 0.00037 45.5 31.0 24 75-98 84-107 (1113)
142 PLN03229 acetyl-coenzyme A car 94.5 7.8 0.00017 45.7 23.1 43 29-71 435-496 (762)
143 COG4372 Uncharacterized protei 94.5 8.7 0.00019 41.8 31.5 73 78-150 81-153 (499)
144 COG4026 Uncharacterized protei 94.5 0.81 1.8E-05 46.0 13.1 73 190-262 132-204 (290)
145 PF10481 CENP-F_N: Cenp-F N-te 94.5 4.5 9.8E-05 42.0 18.8 108 189-296 21-128 (307)
146 PF13514 AAA_27: AAA domain 94.5 19 0.0004 45.4 35.5 25 487-511 1040-1064(1111)
147 TIGR03007 pepcterm_ChnLen poly 94.4 11 0.00025 42.7 26.9 33 119-151 203-235 (498)
148 COG5185 HEC1 Protein involved 94.3 11 0.00024 42.0 36.8 89 88-182 326-417 (622)
149 TIGR01005 eps_transp_fam exopo 94.2 8.6 0.00019 46.2 23.7 16 12-27 72-87 (754)
150 PF08614 ATG16: Autophagy prot 94.1 0.77 1.7E-05 45.7 12.5 105 189-293 77-181 (194)
151 KOG1937 Uncharacterized conser 94.0 13 0.00027 41.4 28.7 145 190-336 349-512 (521)
152 PF13166 AAA_13: AAA domain 93.9 13 0.00027 44.3 24.4 56 206-261 416-471 (712)
153 TIGR01000 bacteriocin_acc bact 93.7 5.5 0.00012 44.9 19.8 33 34-66 89-123 (457)
154 PF14915 CCDC144C: CCDC144C pr 93.7 11 0.00024 39.9 33.6 151 188-345 86-244 (305)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 6.4 0.00014 36.7 20.1 69 167-235 12-80 (132)
156 PF09728 Taxilin: Myosin-like 93.5 13 0.00028 39.9 38.9 44 80-123 24-67 (309)
157 COG2433 Uncharacterized conser 93.4 1.3 2.8E-05 50.7 13.7 53 99-151 415-467 (652)
158 PF12777 MT: Microtubule-bindi 93.4 9.2 0.0002 41.6 20.1 38 289-326 275-312 (344)
159 PF09730 BicD: Microtubule-ass 93.2 23 0.00051 42.1 42.4 66 30-98 22-89 (717)
160 PF06818 Fez1: Fez1; InterPro 93.0 11 0.00023 37.9 19.4 28 100-127 11-38 (202)
161 TIGR03017 EpsF chain length de 93.0 18 0.00039 40.4 23.8 24 235-258 342-365 (444)
162 PF10168 Nup88: Nuclear pore c 93.0 7.1 0.00015 46.6 19.9 24 273-296 688-711 (717)
163 PF10481 CENP-F_N: Cenp-F N-te 93.0 3.2 7E-05 43.0 14.6 116 193-308 18-133 (307)
164 PF04111 APG6: Autophagy prote 92.9 2.5 5.4E-05 45.4 14.6 10 441-450 240-249 (314)
165 PF10146 zf-C4H2: Zinc finger- 92.8 5.6 0.00012 40.8 16.3 75 222-296 26-100 (230)
166 PF04111 APG6: Autophagy prote 92.8 2.5 5.4E-05 45.4 14.4 23 313-335 114-136 (314)
167 PF12325 TMF_TATA_bd: TATA ele 92.8 4.7 0.0001 37.2 14.2 14 169-182 72-85 (120)
168 PF10168 Nup88: Nuclear pore c 92.5 6.6 0.00014 46.9 18.7 65 87-151 560-624 (717)
169 PF10498 IFT57: Intra-flagella 92.5 4.1 8.9E-05 44.6 15.8 58 97-154 264-321 (359)
170 PRK12704 phosphodiesterase; Pr 92.5 24 0.00053 40.6 23.0 18 520-537 386-403 (520)
171 KOG0999 Microtubule-associated 92.3 24 0.00052 40.2 32.7 110 11-131 10-139 (772)
172 KOG2991 Splicing regulator [RN 92.3 15 0.00033 37.9 24.1 106 161-266 173-295 (330)
173 PF07111 HCR: Alpha helical co 92.2 29 0.00062 40.8 36.2 116 231-346 474-599 (739)
174 PF13166 AAA_13: AAA domain 92.0 32 0.00069 40.9 27.6 7 59-65 274-280 (712)
175 KOG0249 LAR-interacting protei 91.9 20 0.00043 42.0 20.4 97 89-186 95-191 (916)
176 PF13870 DUF4201: Domain of un 91.8 14 0.0003 36.2 24.5 84 167-250 44-127 (177)
177 PF09728 Taxilin: Myosin-like 91.7 21 0.00046 38.3 39.3 23 165-187 135-157 (309)
178 TIGR03017 EpsF chain length de 91.7 26 0.00056 39.1 22.9 18 328-345 348-365 (444)
179 PF06008 Laminin_I: Laminin Do 91.5 20 0.00043 37.4 29.4 56 224-279 181-236 (264)
180 PF12325 TMF_TATA_bd: TATA ele 91.4 9.9 0.00022 35.1 14.6 21 169-189 20-40 (120)
181 TIGR01000 bacteriocin_acc bact 91.3 29 0.00063 39.1 24.0 22 79-100 98-119 (457)
182 PRK10246 exonuclease subunit S 91.3 48 0.001 41.6 40.5 11 527-537 1010-1020(1047)
183 PRK12704 phosphodiesterase; Pr 91.2 32 0.00069 39.7 21.8 6 47-52 36-41 (520)
184 KOG1899 LAR transmembrane tyro 91.0 36 0.00077 39.5 21.3 13 613-625 721-733 (861)
185 PF10498 IFT57: Intra-flagella 91.0 11 0.00025 41.2 17.2 65 229-293 260-324 (359)
186 COG4026 Uncharacterized protei 90.9 1.6 3.5E-05 43.9 9.4 73 79-151 136-208 (290)
187 PF05010 TACC: Transforming ac 90.7 20 0.00044 36.2 29.5 18 195-212 120-137 (207)
188 PF05278 PEARLI-4: Arabidopsis 90.6 11 0.00023 39.5 15.6 105 33-148 144-249 (269)
189 PF06008 Laminin_I: Laminin Do 90.4 25 0.00054 36.6 32.1 19 233-251 183-201 (264)
190 KOG0249 LAR-interacting protei 90.4 34 0.00074 40.3 20.4 82 59-143 33-114 (916)
191 PRK10929 putative mechanosensi 90.3 59 0.0013 40.9 33.1 16 137-152 147-162 (1109)
192 PF06818 Fez1: Fez1; InterPro 90.1 23 0.00049 35.7 19.9 72 78-149 10-81 (202)
193 PF09304 Cortex-I_coil: Cortex 89.8 15 0.00032 33.1 16.0 63 188-250 18-80 (107)
194 PF09789 DUF2353: Uncharacteri 89.8 32 0.0007 37.0 25.8 18 433-450 271-288 (319)
195 PF04949 Transcrip_act: Transc 89.6 19 0.00041 34.2 17.3 63 218-280 81-143 (159)
196 PF09304 Cortex-I_coil: Cortex 89.4 16 0.00034 33.0 14.4 64 233-296 14-77 (107)
197 KOG0804 Cytoplasmic Zn-finger 89.4 26 0.00056 39.1 17.9 99 195-296 349-447 (493)
198 PF00769 ERM: Ezrin/radixin/mo 88.9 28 0.0006 36.1 17.3 23 220-242 25-47 (246)
199 TIGR03319 YmdA_YtgF conserved 88.8 50 0.0011 38.0 21.3 8 559-566 481-488 (514)
200 PF14992 TMCO5: TMCO5 family 88.7 35 0.00075 36.0 19.1 40 487-528 229-268 (280)
201 PF12795 MscS_porin: Mechanose 88.6 31 0.00068 35.4 22.5 26 121-146 39-64 (240)
202 PF04012 PspA_IM30: PspA/IM30 88.6 29 0.00064 34.9 18.9 112 37-151 11-129 (221)
203 PF12795 MscS_porin: Mechanose 88.0 34 0.00075 35.1 23.1 91 59-152 36-138 (240)
204 KOG0982 Centrosomal protein Nu 87.8 50 0.0011 36.7 23.9 13 78-90 222-234 (502)
205 PRK10869 recombination and rep 87.5 63 0.0014 37.6 25.8 12 410-421 452-463 (553)
206 KOG4302 Microtubule-associated 87.4 69 0.0015 37.9 31.8 30 612-641 620-649 (660)
207 KOG4360 Uncharacterized coiled 86.9 43 0.00093 38.0 17.8 8 420-427 430-437 (596)
208 PRK10929 putative mechanosensi 86.5 1E+02 0.0022 38.9 32.0 16 130-145 147-162 (1109)
209 PF09787 Golgin_A5: Golgin sub 86.2 70 0.0015 36.8 31.0 11 401-411 456-466 (511)
210 PF04912 Dynamitin: Dynamitin 86.1 59 0.0013 35.9 24.6 19 313-331 369-387 (388)
211 KOG0243 Kinesin-like protein [ 86.1 97 0.0021 38.4 29.8 115 78-195 397-513 (1041)
212 PF09755 DUF2046: Uncharacteri 85.8 54 0.0012 35.1 33.7 84 161-250 80-164 (310)
213 PF07889 DUF1664: Protein of u 85.5 13 0.00029 34.5 11.3 77 48-130 42-120 (126)
214 PF06120 Phage_HK97_TLTM: Tail 85.3 41 0.0009 35.9 16.3 51 141-196 55-105 (301)
215 COG0497 RecN ATPase involved i 85.2 81 0.0017 36.6 22.7 35 475-509 430-464 (557)
216 PF05384 DegS: Sensor protein 84.6 40 0.00088 32.7 21.4 9 173-181 28-36 (159)
217 PF06005 DUF904: Protein of un 84.5 23 0.0005 29.7 11.5 27 196-222 7-33 (72)
218 PF09738 DUF2051: Double stran 84.4 18 0.0004 38.6 13.3 15 462-476 278-292 (302)
219 KOG0804 Cytoplasmic Zn-finger 84.3 47 0.001 37.1 16.4 76 59-140 326-402 (493)
220 PF14915 CCDC144C: CCDC144C pr 83.7 64 0.0014 34.3 36.5 20 109-128 87-106 (305)
221 PF15066 CAGE1: Cancer-associa 83.6 83 0.0018 35.4 27.0 49 202-250 392-440 (527)
222 PF04582 Reo_sigmaC: Reovirus 83.4 1.5 3.3E-05 46.9 4.7 75 258-332 79-153 (326)
223 PF03962 Mnd1: Mnd1 family; I 82.6 40 0.00086 33.5 14.2 41 78-118 62-102 (188)
224 PF10234 Cluap1: Clusterin-ass 82.5 43 0.00094 35.2 14.8 64 82-145 187-257 (267)
225 PF14992 TMCO5: TMCO5 family 82.0 73 0.0016 33.7 16.5 7 444-450 260-266 (280)
226 PRK00106 hypothetical protein; 81.8 1.1E+02 0.0024 35.5 19.6 13 485-497 336-348 (535)
227 KOG4603 TBP-1 interacting prot 81.7 48 0.001 32.4 13.5 30 21-50 23-52 (201)
228 KOG2991 Splicing regulator [RN 81.5 71 0.0015 33.2 22.9 70 85-154 122-204 (330)
229 PF07106 TBPIP: Tat binding pr 81.5 25 0.00055 34.0 12.2 23 27-50 23-45 (169)
230 PF07851 TMPIT: TMPIT-like pro 81.3 16 0.00035 39.4 11.5 84 97-182 2-85 (330)
231 PF14197 Cep57_CLD_2: Centroso 80.8 28 0.00062 28.9 10.3 34 217-250 8-41 (69)
232 KOG4593 Mitotic checkpoint pro 79.7 1.4E+02 0.003 35.4 39.3 58 121-178 238-295 (716)
233 KOG0982 Centrosomal protein Nu 79.7 1.1E+02 0.0023 34.2 26.1 72 163-234 323-394 (502)
234 PF10234 Cluap1: Clusterin-ass 79.6 86 0.0019 33.0 16.7 33 235-267 225-257 (267)
235 PF02994 Transposase_22: L1 tr 79.5 5.8 0.00013 43.6 7.7 15 228-242 172-186 (370)
236 PF04012 PspA_IM30: PspA/IM30 79.5 73 0.0016 32.1 23.4 46 231-276 94-139 (221)
237 PF15397 DUF4618: Domain of un 79.4 85 0.0018 32.8 27.6 79 59-146 25-107 (258)
238 KOG0239 Kinesin (KAR3 subfamil 79.1 1.5E+02 0.0032 35.4 22.6 6 506-511 493-498 (670)
239 PF05384 DegS: Sensor protein 78.2 69 0.0015 31.1 22.3 48 193-240 27-74 (159)
240 KOG1962 B-cell receptor-associ 78.1 50 0.0011 33.6 13.1 12 11-22 6-17 (216)
241 PF03962 Mnd1: Mnd1 family; I 78.1 53 0.0011 32.7 13.3 30 188-217 137-166 (188)
242 PF08581 Tup_N: Tup N-terminal 77.9 43 0.00094 28.6 11.3 56 189-244 7-62 (79)
243 PF06785 UPF0242: Uncharacteri 77.7 1.1E+02 0.0024 33.1 20.4 9 442-450 284-292 (401)
244 PRK03947 prefoldin subunit alp 77.6 30 0.00064 32.4 10.9 28 44-71 8-37 (140)
245 KOG1962 B-cell receptor-associ 77.2 55 0.0012 33.3 13.1 53 229-281 152-204 (216)
246 PF12329 TMF_DNA_bd: TATA elem 77.1 27 0.00059 29.4 9.3 16 82-97 9-24 (74)
247 PF07889 DUF1664: Protein of u 77.0 55 0.0012 30.5 12.1 87 59-151 30-120 (126)
248 COG1730 GIM5 Predicted prefold 76.4 28 0.0006 33.3 10.2 40 101-140 8-47 (145)
249 PF05266 DUF724: Protein of un 76.2 33 0.00072 34.2 11.2 13 59-71 81-93 (190)
250 PF04582 Reo_sigmaC: Reovirus 76.2 5.4 0.00012 42.8 6.0 107 189-295 45-151 (326)
251 PF12072 DUF3552: Domain of un 76.2 89 0.0019 31.3 18.2 27 212-238 69-95 (201)
252 cd00632 Prefoldin_beta Prefold 76.0 57 0.0012 29.0 12.0 19 163-181 68-86 (105)
253 KOG1899 LAR transmembrane tyro 75.8 1.7E+02 0.0036 34.3 21.5 52 60-114 110-161 (861)
254 PF05377 FlaC_arch: Flagella a 75.2 10 0.00022 30.2 5.7 37 167-203 2-38 (55)
255 KOG0239 Kinesin (KAR3 subfamil 75.1 1.9E+02 0.0041 34.6 20.3 73 216-292 243-315 (670)
256 COG1842 PspA Phage shock prote 75.1 1E+02 0.0022 31.6 19.2 59 37-98 12-72 (225)
257 PF06705 SF-assemblin: SF-asse 75.0 1.1E+02 0.0023 31.6 33.2 10 336-345 204-213 (247)
258 PF02994 Transposase_22: L1 tr 74.9 9.8 0.00021 41.8 7.9 8 285-292 180-187 (370)
259 PF07106 TBPIP: Tat binding pr 74.5 41 0.0009 32.5 11.4 21 163-183 114-134 (169)
260 PF12777 MT: Microtubule-bindi 74.3 1.4E+02 0.0029 32.5 23.2 11 233-243 247-257 (344)
261 PF11932 DUF3450: Protein of u 73.7 1.2E+02 0.0025 31.4 17.8 7 375-381 196-202 (251)
262 COG4477 EzrA Negative regulato 73.4 1.8E+02 0.0039 33.5 40.4 6 33-38 66-71 (570)
263 PF02403 Seryl_tRNA_N: Seryl-t 73.3 20 0.00044 31.9 8.2 37 46-85 26-64 (108)
264 PLN02939 transferase, transfer 73.0 2.5E+02 0.0054 35.0 30.0 24 164-187 225-248 (977)
265 PF07111 HCR: Alpha helical co 72.9 2.1E+02 0.0045 34.0 37.6 68 78-145 162-229 (739)
266 COG3096 MukB Uncharacterized p 72.9 2.1E+02 0.0047 34.2 30.8 17 163-179 891-907 (1480)
267 PF10805 DUF2730: Protein of u 72.2 28 0.0006 31.3 8.8 53 92-144 42-96 (106)
268 PF13863 DUF4200: Domain of un 72.0 78 0.0017 28.7 17.0 34 263-296 74-107 (126)
269 KOG1853 LIS1-interacting prote 71.6 1.3E+02 0.0029 31.2 22.9 21 456-476 240-260 (333)
270 KOG1853 LIS1-interacting prote 71.4 1.3E+02 0.0029 31.2 23.3 8 373-380 198-205 (333)
271 COG1842 PspA Phage shock prote 71.2 1.3E+02 0.0028 30.9 20.0 39 188-226 33-71 (225)
272 PF04949 Transcrip_act: Transc 71.2 99 0.0021 29.6 17.9 26 121-146 53-78 (159)
273 PRK15422 septal ring assembly 70.6 67 0.0015 27.4 10.6 33 237-269 41-73 (79)
274 KOG4360 Uncharacterized coiled 70.2 2E+02 0.0044 32.8 23.5 36 484-519 438-475 (596)
275 PF06705 SF-assemblin: SF-asse 69.4 1.4E+02 0.0031 30.7 31.5 25 163-187 83-107 (247)
276 PF03148 Tektin: Tektin family 68.9 1.9E+02 0.0041 32.0 36.1 27 270-296 324-350 (384)
277 PF05276 SH3BP5: SH3 domain-bi 68.7 1.5E+02 0.0033 30.7 25.7 45 229-273 122-166 (239)
278 PF15254 CCDC14: Coiled-coil d 68.1 2.7E+02 0.0059 33.5 24.4 124 201-334 428-551 (861)
279 PF08647 BRE1: BRE1 E3 ubiquit 67.9 86 0.0019 27.6 13.5 46 205-250 8-53 (96)
280 KOG4603 TBP-1 interacting prot 67.6 1.3E+02 0.0028 29.5 14.5 68 188-255 81-150 (201)
281 PF09787 Golgin_A5: Golgin sub 67.3 2.4E+02 0.0052 32.5 34.2 29 237-265 276-304 (511)
282 COG4694 Uncharacterized protei 66.9 81 0.0017 36.4 12.5 26 59-90 297-322 (758)
283 KOG4302 Microtubule-associated 66.9 2.7E+02 0.006 33.0 23.4 39 440-478 407-446 (660)
284 PF11570 E2R135: Coiled-coil r 66.8 1.1E+02 0.0024 28.5 14.2 44 189-232 11-54 (136)
285 PF15254 CCDC14: Coiled-coil d 66.4 2.9E+02 0.0064 33.2 26.3 25 381-405 593-617 (861)
286 KOG4809 Rab6 GTPase-interactin 66.1 2.5E+02 0.0055 32.4 35.0 22 324-345 516-537 (654)
287 PF10267 Tmemb_cc2: Predicted 66.1 2E+02 0.0044 32.0 15.5 18 78-95 62-79 (395)
288 PRK00409 recombination and DNA 64.8 2.1E+02 0.0045 34.9 16.6 44 195-238 504-547 (782)
289 KOG1850 Myosin-like coiled-coi 64.3 2.1E+02 0.0046 30.8 34.6 180 93-277 110-306 (391)
290 PF08826 DMPK_coil: DMPK coile 64.1 68 0.0015 26.1 8.5 39 163-201 16-54 (61)
291 PF01920 Prefoldin_2: Prefoldi 63.4 99 0.0021 26.9 10.5 22 125-146 74-95 (106)
292 KOG3091 Nuclear pore complex, 63.1 2.7E+02 0.0059 31.7 16.5 51 191-241 353-403 (508)
293 COG3206 GumC Uncharacterized p 62.9 2.6E+02 0.0057 31.4 21.3 38 34-71 187-228 (458)
294 PRK10698 phage shock protein P 62.2 1.9E+02 0.0041 29.5 21.6 37 59-98 36-72 (222)
295 PRK09841 cryptic autophosphory 62.1 2.5E+02 0.0053 33.8 16.6 36 174-209 262-297 (726)
296 PF15233 SYCE1: Synaptonemal c 61.6 1.4E+02 0.0031 27.9 15.8 26 311-337 105-130 (134)
297 PF05266 DUF724: Protein of un 61.4 1.8E+02 0.0039 29.0 17.5 8 231-238 134-141 (190)
298 PRK09841 cryptic autophosphory 60.7 2.8E+02 0.006 33.4 16.8 18 481-498 544-561 (726)
299 PF07851 TMPIT: TMPIT-like pro 60.2 93 0.002 33.7 11.3 24 515-538 227-252 (330)
300 KOG0972 Huntingtin interacting 60.1 1.3E+02 0.0029 31.9 11.8 70 85-154 259-328 (384)
301 PF04871 Uso1_p115_C: Uso1 / p 59.6 1.6E+02 0.0034 27.8 14.9 19 314-332 93-111 (136)
302 COG3352 FlaC Putative archaeal 59.1 1.7E+02 0.0038 28.1 11.6 25 163-187 70-94 (157)
303 PRK14011 prefoldin subunit alp 59.0 1.2E+02 0.0027 28.9 10.7 11 174-184 90-100 (144)
304 PF10267 Tmemb_cc2: Predicted 58.7 2.5E+02 0.0053 31.4 14.5 15 220-234 304-318 (395)
305 KOG2264 Exostosin EXT1L [Signa 58.6 78 0.0017 36.4 10.6 9 406-414 366-374 (907)
306 PRK12705 hypothetical protein; 58.4 3.4E+02 0.0074 31.3 22.1 19 520-538 374-392 (508)
307 PF07798 DUF1640: Protein of u 58.3 1.9E+02 0.0041 28.3 16.9 11 188-198 140-150 (177)
308 PF15290 Syntaphilin: Golgi-lo 58.0 2.5E+02 0.0055 29.7 14.9 27 170-196 73-99 (305)
309 KOG4657 Uncharacterized conser 58.0 2.3E+02 0.0049 29.1 14.6 109 59-173 31-139 (246)
310 PRK13182 racA polar chromosome 57.8 71 0.0015 31.5 9.2 59 266-335 88-148 (175)
311 TIGR00414 serS seryl-tRNA synt 57.5 1.3E+02 0.0028 33.7 12.4 15 623-637 389-403 (418)
312 KOG4403 Cell surface glycoprot 56.7 3.2E+02 0.0069 30.7 14.5 18 8-25 25-42 (575)
313 TIGR03752 conj_TIGR03752 integ 55.8 1.4E+02 0.0031 33.8 12.1 47 193-239 59-105 (472)
314 TIGR01010 BexC_CtrB_KpsE polys 55.4 3E+02 0.0066 29.8 15.0 28 181-208 172-199 (362)
315 PF05529 Bap31: B-cell recepto 55.1 1.2E+02 0.0025 30.0 10.4 37 11-50 9-45 (192)
316 PF15294 Leu_zip: Leucine zipp 55.0 2.9E+02 0.0062 29.4 17.1 45 184-228 130-174 (278)
317 TIGR02231 conserved hypothetic 54.9 1.2E+02 0.0026 34.8 12.0 15 258-272 154-168 (525)
318 PF12761 End3: Actin cytoskele 54.8 1.5E+02 0.0033 29.7 10.9 13 136-148 141-153 (195)
319 COG3074 Uncharacterized protei 54.2 1.3E+02 0.0028 25.1 10.0 14 267-280 57-70 (79)
320 PLN03229 acetyl-coenzyme A car 54.2 4.7E+02 0.01 31.6 26.6 15 59-73 434-448 (762)
321 COG3074 Uncharacterized protei 53.8 1.3E+02 0.0028 25.1 10.5 15 236-250 40-54 (79)
322 KOG2264 Exostosin EXT1L [Signa 52.9 1.1E+02 0.0024 35.3 10.5 17 234-250 92-108 (907)
323 KOG4460 Nuclear pore complex, 52.3 4.3E+02 0.0094 30.6 17.8 61 88-148 584-644 (741)
324 PRK11519 tyrosine kinase; Prov 51.2 5.1E+02 0.011 31.1 17.5 18 481-498 539-556 (719)
325 TIGR02977 phageshock_pspA phag 50.6 2.8E+02 0.0061 28.0 22.0 34 237-270 101-134 (219)
326 PRK11519 tyrosine kinase; Prov 50.5 5.2E+02 0.011 31.0 17.6 30 179-208 267-296 (719)
327 PRK10698 phage shock protein P 49.2 3E+02 0.0066 28.0 23.3 93 201-296 93-185 (222)
328 KOG0244 Kinesin-like protein [ 49.0 6E+02 0.013 31.3 24.1 22 163-184 465-486 (913)
329 PRK10636 putative ABC transpor 48.7 94 0.002 36.7 10.0 19 217-235 608-626 (638)
330 KOG4572 Predicted DNA-binding 48.6 5.8E+02 0.013 31.1 24.6 39 457-495 1280-1323(1424)
331 PRK00106 hypothetical protein; 48.5 5E+02 0.011 30.2 24.9 12 485-496 377-388 (535)
332 KOG4460 Nuclear pore complex, 47.8 5.1E+02 0.011 30.1 19.2 23 6-28 472-499 (741)
333 PF09731 Mitofilin: Mitochondr 47.2 5.2E+02 0.011 30.0 31.2 34 550-587 547-580 (582)
334 PF02183 HALZ: Homeobox associ 47.0 73 0.0016 24.2 5.7 33 233-265 3-35 (45)
335 PF04871 Uso1_p115_C: Uso1 / p 46.4 2.6E+02 0.0056 26.3 14.7 8 328-335 93-100 (136)
336 PRK00295 hypothetical protein; 46.3 1.3E+02 0.0027 24.9 7.6 29 115-143 21-49 (68)
337 PF10458 Val_tRNA-synt_C: Valy 45.2 1.3E+02 0.0029 24.4 7.5 29 126-154 3-31 (66)
338 PF08172 CASP_C: CASP C termin 44.4 3.1E+02 0.0068 28.5 11.9 32 118-149 4-35 (248)
339 COG3352 FlaC Putative archaeal 44.2 2.3E+02 0.0051 27.2 9.8 8 196-203 54-61 (157)
340 PRK02793 phi X174 lysis protei 44.2 1.4E+02 0.0031 24.9 7.7 28 116-143 25-52 (72)
341 PF06810 Phage_GP20: Phage min 44.1 2.2E+02 0.0048 27.4 10.0 52 93-144 14-68 (155)
342 KOG1937 Uncharacterized conser 43.8 5.3E+02 0.012 29.2 34.3 48 280-329 472-519 (521)
343 COG2900 SlyX Uncharacterized p 42.7 1.9E+02 0.0041 24.4 7.9 44 195-238 10-53 (72)
344 PRK00846 hypothetical protein; 42.3 2.1E+02 0.0045 24.5 8.3 50 98-147 12-61 (77)
345 PF06476 DUF1090: Protein of u 42.3 2.7E+02 0.0058 25.5 9.8 19 192-210 42-60 (115)
346 PF15397 DUF4618: Domain of un 42.3 4.3E+02 0.0093 27.7 29.3 20 313-332 194-213 (258)
347 KOG3091 Nuclear pore complex, 42.2 5.8E+02 0.013 29.2 17.7 86 86-178 363-448 (508)
348 TIGR02977 phageshock_pspA phag 41.9 3.8E+02 0.0083 27.0 23.7 53 202-254 94-146 (219)
349 KOG2751 Beclin-like protein [S 40.5 5.8E+02 0.013 28.7 15.8 13 495-507 409-421 (447)
350 PF06785 UPF0242: Uncharacteri 39.9 5.3E+02 0.011 28.1 19.0 10 321-330 203-212 (401)
351 PRK12705 hypothetical protein; 39.7 6.5E+02 0.014 29.1 22.0 37 442-478 253-289 (508)
352 PRK00846 hypothetical protein; 39.4 1.9E+02 0.0041 24.7 7.7 42 93-134 14-55 (77)
353 PRK05431 seryl-tRNA synthetase 39.3 2.5E+02 0.0054 31.5 11.1 34 271-304 74-107 (425)
354 TIGR03545 conserved hypothetic 39.1 2.7E+02 0.0058 32.5 11.5 15 412-426 389-403 (555)
355 TIGR00414 serS seryl-tRNA synt 39.1 1.6E+02 0.0035 32.9 9.5 30 49-81 30-61 (418)
356 PF04100 Vps53_N: Vps53-like, 39.0 5.8E+02 0.013 28.3 16.8 204 220-453 17-233 (383)
357 cd00584 Prefoldin_alpha Prefol 38.7 3.1E+02 0.0067 25.0 10.6 11 59-69 18-28 (129)
358 KOG0288 WD40 repeat protein Ti 38.6 6.1E+02 0.013 28.4 17.6 9 412-420 167-175 (459)
359 cd07667 BAR_SNX30 The Bin/Amph 37.6 4.9E+02 0.011 27.0 22.9 27 161-187 103-129 (240)
360 PF07989 Microtub_assoc: Micro 37.6 2.5E+02 0.0055 23.7 8.8 67 83-149 5-72 (75)
361 KOG1760 Molecular chaperone Pr 37.3 3.5E+02 0.0075 25.2 9.9 26 61-89 23-48 (131)
362 PRK13729 conjugal transfer pil 36.3 1.5E+02 0.0033 33.7 8.6 21 406-426 235-255 (475)
363 PF15294 Leu_zip: Leucine zipp 36.3 5.5E+02 0.012 27.3 16.7 25 163-187 130-154 (278)
364 PF09755 DUF2046: Uncharacteri 36.1 5.8E+02 0.013 27.5 36.5 18 163-180 111-128 (310)
365 PLN02320 seryl-tRNA synthetase 35.9 3E+02 0.0066 31.7 11.0 18 520-537 368-385 (502)
366 KOG2005 26S proteasome regulat 35.8 6.6E+02 0.014 30.1 13.5 128 412-539 178-339 (878)
367 PLN02678 seryl-tRNA synthetase 35.4 2.8E+02 0.006 31.5 10.6 34 271-304 79-112 (448)
368 PRK13729 conjugal transfer pil 35.3 1.5E+02 0.0033 33.7 8.4 11 592-602 445-455 (475)
369 PF08581 Tup_N: Tup N-terminal 35.2 2.9E+02 0.0062 23.7 11.5 43 233-275 16-58 (79)
370 KOG3647 Predicted coiled-coil 35.0 5.7E+02 0.012 27.0 14.7 124 22-148 75-203 (338)
371 PF13747 DUF4164: Domain of un 35.0 3.1E+02 0.0066 23.9 12.6 18 233-250 37-54 (89)
372 PF05008 V-SNARE: Vesicle tran 34.8 1.9E+02 0.0042 23.9 7.2 19 163-181 59-77 (79)
373 PRK15178 Vi polysaccharide exp 34.7 7.2E+02 0.016 28.1 14.6 17 322-338 365-381 (434)
374 PF15188 CCDC-167: Coiled-coil 34.1 1.9E+02 0.0042 25.1 7.0 23 129-151 7-29 (85)
375 TIGR03545 conserved hypothetic 33.9 3.5E+02 0.0076 31.6 11.4 14 407-420 372-385 (555)
376 PRK10636 putative ABC transpor 33.6 2.2E+02 0.0049 33.6 10.0 11 16-26 495-505 (638)
377 KOG0240 Kinesin (SMY1 subfamil 33.5 8.4E+02 0.018 28.5 21.6 6 385-390 586-591 (607)
378 COG5283 Phage-related tail pro 33.2 1.1E+03 0.025 30.0 23.2 173 167-345 24-203 (1213)
379 PF08826 DMPK_coil: DMPK coile 33.0 2.7E+02 0.0058 22.7 10.0 18 233-250 30-47 (61)
380 KOG3478 Prefoldin subunit 6, K 32.9 3.9E+02 0.0084 24.4 13.7 37 163-199 74-110 (120)
381 KOG3564 GTPase-activating prot 32.6 4.5E+02 0.0098 30.0 11.2 73 214-293 28-100 (604)
382 TIGR00293 prefoldin, archaeal 32.5 2E+02 0.0043 26.1 7.6 93 44-144 1-124 (126)
383 PF07989 Microtub_assoc: Micro 32.4 3.1E+02 0.0067 23.2 9.4 25 214-238 7-31 (75)
384 PF06428 Sec2p: GDP/GTP exchan 32.4 3.4E+02 0.0073 24.3 8.6 8 288-295 55-62 (100)
385 PF06657 Cep57_MT_bd: Centroso 32.3 3.2E+02 0.0069 23.3 8.1 29 227-255 16-44 (79)
386 COG0497 RecN ATPase involved i 32.0 8.9E+02 0.019 28.3 27.6 10 411-420 454-463 (557)
387 PF09403 FadA: Adhesion protei 32.0 4.3E+02 0.0093 24.7 14.2 12 324-335 105-116 (126)
388 PLN02372 violaxanthin de-epoxi 31.4 5.9E+02 0.013 28.5 11.8 14 138-151 365-378 (455)
389 PF04645 DUF603: Protein of un 31.4 1.9E+02 0.0042 28.4 7.2 18 28-45 32-49 (181)
390 PF06248 Zw10: Centromere/kine 31.1 8.5E+02 0.018 28.4 14.2 38 34-71 6-46 (593)
391 PRK10803 tol-pal system protei 30.6 3.6E+02 0.0077 28.2 9.9 12 359-370 166-177 (263)
392 PF13758 Prefoldin_3: Prefoldi 30.4 1E+02 0.0023 27.5 4.9 27 161-187 71-97 (99)
393 PRK05431 seryl-tRNA synthetase 30.2 3.2E+02 0.0069 30.7 10.0 26 275-300 71-96 (425)
394 PF13747 DUF4164: Domain of un 30.1 3.7E+02 0.0081 23.4 12.0 12 170-181 13-24 (89)
395 TIGR02132 phaR_Bmeg polyhydrox 30.1 5.6E+02 0.012 25.4 10.3 22 189-210 75-96 (189)
396 PF08172 CASP_C: CASP C termin 30.0 6.5E+02 0.014 26.2 12.7 14 311-324 120-133 (248)
397 PF04859 DUF641: Plant protein 29.9 1.3E+02 0.0029 28.2 5.8 32 81-112 90-121 (131)
398 PF07035 Mic1: Colon cancer-as 29.5 34 0.00074 33.4 1.9 62 579-644 46-112 (167)
399 PF05531 NPV_P10: Nucleopolyhe 29.4 3.4E+02 0.0074 23.1 7.5 26 224-249 7-32 (75)
400 PF04912 Dynamitin: Dynamitin 29.4 8E+02 0.017 27.0 19.9 15 38-52 97-111 (388)
401 PLN02678 seryl-tRNA synthetase 29.3 3.4E+02 0.0075 30.8 10.0 13 521-533 313-325 (448)
402 TIGR02132 phaR_Bmeg polyhydrox 29.2 5.8E+02 0.013 25.3 10.6 8 268-275 126-133 (189)
403 KOG3564 GTPase-activating prot 28.9 4.5E+02 0.0097 30.0 10.4 29 7-35 8-36 (604)
404 COG1730 GIM5 Predicted prefold 28.9 5.2E+02 0.011 24.7 13.4 39 107-145 7-45 (145)
405 PF10212 TTKRSYEDQ: Predicted 28.5 9.7E+02 0.021 27.7 22.2 40 184-223 418-457 (518)
406 COG1382 GimC Prefoldin, chaper 28.4 4.8E+02 0.01 24.1 14.8 27 198-224 18-44 (119)
407 PRK10803 tol-pal system protei 28.4 4.2E+02 0.0091 27.7 10.0 29 258-286 70-98 (263)
408 KOG4677 Golgi integral membran 28.2 9.3E+02 0.02 27.4 22.0 40 105-144 308-347 (554)
409 PF08657 DASH_Spc34: DASH comp 28.1 2.7E+02 0.0058 29.2 8.4 10 172-181 246-255 (259)
410 PF11365 DUF3166: Protein of u 28.1 4.3E+02 0.0094 23.5 9.1 72 264-335 9-92 (96)
411 TIGR01554 major_cap_HK97 phage 27.9 2.4E+02 0.0053 30.8 8.5 8 383-390 209-216 (378)
412 KOG3088 Secretory carrier memb 27.8 93 0.002 32.9 4.8 8 482-489 195-202 (313)
413 PF05335 DUF745: Protein of un 27.3 6.3E+02 0.014 25.2 18.1 18 195-212 69-86 (188)
414 PF07544 Med9: RNA polymerase 27.1 1.4E+02 0.0029 25.6 5.0 13 59-71 26-38 (83)
415 KOG0288 WD40 repeat protein Ti 26.7 9.5E+02 0.021 27.0 16.6 6 559-564 386-391 (459)
416 KOG2391 Vacuolar sorting prote 26.7 5.9E+02 0.013 27.8 10.5 73 174-246 212-285 (365)
417 PF07028 DUF1319: Protein of u 26.6 5.4E+02 0.012 24.1 9.5 14 141-154 92-105 (126)
418 smart00509 TFS2N Domain in the 26.5 1.1E+02 0.0025 25.6 4.3 21 457-477 54-74 (75)
419 PF03961 DUF342: Protein of un 26.5 3.6E+02 0.0078 30.4 9.7 78 169-247 331-408 (451)
420 PF14726 RTTN_N: Rotatin, an a 26.4 98 0.0021 27.6 4.1 40 489-528 32-71 (98)
421 PF02050 FliJ: Flagellar FliJ 26.4 4.2E+02 0.0091 22.8 17.9 111 175-285 1-116 (123)
422 KOG3809 Microtubule-binding pr 26.4 5E+02 0.011 29.3 10.1 96 41-139 478-579 (583)
423 PF04799 Fzo_mitofusin: fzo-li 26.2 5E+02 0.011 25.6 9.2 91 33-129 69-167 (171)
424 PF07798 DUF1640: Protein of u 26.2 6.2E+02 0.013 24.6 19.7 132 76-216 21-154 (177)
425 COG2900 SlyX Uncharacterized p 25.8 4.1E+02 0.0088 22.4 7.5 52 89-140 5-56 (72)
426 PF12252 SidE: Dot/Icm substra 25.6 1.5E+03 0.032 28.8 22.6 222 159-397 1020-1290(1439)
427 PF03961 DUF342: Protein of un 25.5 4.5E+02 0.0097 29.6 10.3 72 225-296 331-408 (451)
428 PF14257 DUF4349: Domain of un 25.4 2E+02 0.0043 29.8 6.9 90 47-144 103-193 (262)
429 PF05008 V-SNARE: Vesicle tran 25.4 3.9E+02 0.0084 22.0 7.9 76 190-267 3-79 (79)
430 PF13874 Nup54: Nucleoporin co 25.2 5.7E+02 0.012 24.0 9.4 93 175-267 33-125 (141)
431 PF04728 LPP: Lipoprotein leuc 25.2 3.6E+02 0.0078 21.6 8.2 49 164-212 2-50 (56)
432 TIGR03495 phage_LysB phage lys 25.0 5.9E+02 0.013 24.0 10.2 77 62-141 20-96 (135)
433 cd00890 Prefoldin Prefoldin is 24.7 5.1E+02 0.011 23.2 11.8 96 108-205 1-127 (129)
434 PF15456 Uds1: Up-regulated Du 24.6 5.7E+02 0.012 23.7 12.1 79 172-251 22-111 (124)
435 PF14282 FlxA: FlxA-like prote 24.5 4.5E+02 0.0098 23.5 8.1 55 178-232 18-76 (106)
436 PF14712 Snapin_Pallidin: Snap 24.5 4.5E+02 0.0096 22.4 11.4 78 191-269 12-91 (92)
437 PRK01203 prefoldin subunit alp 24.4 4E+02 0.0086 25.1 7.9 95 102-198 3-120 (130)
438 PLN02320 seryl-tRNA synthetase 24.2 4.3E+02 0.0092 30.5 9.7 75 200-279 93-167 (502)
439 PF02183 HALZ: Homeobox associ 24.2 2.9E+02 0.0063 21.0 5.7 42 238-279 1-42 (45)
440 PF03999 MAP65_ASE1: Microtubu 24.1 26 0.00055 41.3 0.0 231 123-378 29-302 (619)
441 PF06476 DUF1090: Protein of u 24.0 5.6E+02 0.012 23.4 10.0 80 59-145 29-114 (115)
442 KOG4438 Centromere-associated 24.0 1.1E+03 0.023 26.7 33.8 277 48-334 127-422 (446)
443 PF07445 priB_priC: Primosomal 23.9 6.9E+02 0.015 24.4 12.7 141 5-148 26-173 (173)
444 PF13094 CENP-Q: CENP-Q, a CEN 23.5 6.4E+02 0.014 23.9 10.0 67 230-296 22-88 (160)
445 PF14073 Cep57_CLD: Centrosome 23.5 7.3E+02 0.016 24.6 22.2 167 101-287 6-172 (178)
446 PF04645 DUF603: Protein of un 23.4 7.2E+02 0.016 24.5 10.0 72 166-237 76-161 (181)
447 COG0172 SerS Seryl-tRNA synthe 23.1 9.2E+02 0.02 27.2 11.8 100 202-302 4-107 (429)
448 smart00806 AIP3 Actin interact 23.1 1.1E+03 0.024 26.5 18.2 135 198-332 83-270 (426)
449 PF09486 HrpB7: Bacterial type 23.0 7E+02 0.015 24.2 20.3 140 174-313 3-150 (158)
450 KOG3809 Microtubule-binding pr 22.8 1E+03 0.022 27.0 11.5 102 111-219 477-579 (583)
451 TIGR02449 conserved hypothetic 22.6 4.4E+02 0.0096 21.7 9.0 62 222-283 1-62 (65)
452 PF10212 TTKRSYEDQ: Predicted 22.4 1.2E+03 0.027 26.9 22.6 170 122-304 297-514 (518)
453 KOG3433 Protein involved in me 22.2 7.9E+02 0.017 24.5 9.8 71 77-147 73-143 (203)
454 KOG2010 Double stranded RNA bi 22.2 8.6E+02 0.019 26.4 10.6 96 213-308 110-206 (405)
455 PF04201 TPD52: Tumour protein 22.2 2.1E+02 0.0046 27.8 5.7 39 112-150 28-66 (162)
456 TIGR03752 conj_TIGR03752 integ 22.1 1.2E+03 0.025 26.8 12.3 80 216-295 61-141 (472)
457 KOG2010 Double stranded RNA bi 22.0 8.1E+02 0.018 26.6 10.4 97 234-330 110-207 (405)
458 PF02463 SMC_N: RecF/RecN/SMC 21.8 13 0.00029 37.0 -2.6 48 478-525 138-185 (220)
459 PF04859 DUF641: Plant protein 21.7 3.1E+02 0.0066 25.8 6.6 54 76-129 78-131 (131)
460 PF05335 DUF745: Protein of un 21.6 8.1E+02 0.018 24.4 17.9 108 174-281 69-176 (188)
461 PF03999 MAP65_ASE1: Microtubu 21.2 1.1E+02 0.0023 36.2 4.3 290 37-330 28-368 (619)
462 cd00890 Prefoldin Prefoldin is 20.9 6.1E+02 0.013 22.7 10.5 91 129-226 1-127 (129)
463 KOG3990 Uncharacterized conser 20.9 4.8E+02 0.01 27.3 8.2 69 201-270 226-295 (305)
464 PRK13182 racA polar chromosome 20.8 8.1E+02 0.018 24.1 9.8 64 177-242 83-146 (175)
465 PF06156 DUF972: Protein of un 20.8 5.5E+02 0.012 23.2 7.9 50 221-270 8-57 (107)
466 PRK10361 DNA recombination pro 20.8 1.3E+03 0.028 26.5 23.3 149 188-359 35-184 (475)
467 PF05531 NPV_P10: Nucleopolyhe 20.3 5E+02 0.011 22.1 6.9 54 170-223 9-65 (75)
468 PF05600 DUF773: Protein of un 20.3 1.3E+03 0.029 26.5 12.8 118 25-145 358-492 (507)
469 PHA01750 hypothetical protein 20.3 2.1E+02 0.0045 23.7 4.4 42 53-97 31-75 (75)
470 PF10211 Ax_dynein_light: Axon 20.2 8.5E+02 0.018 24.1 14.0 108 42-152 73-188 (189)
471 cd00183 TFIIS_I N-terminal dom 20.1 1.8E+02 0.0039 24.3 4.4 36 442-477 22-76 (76)
472 KOG4572 Predicted DNA-binding 20.0 1.7E+03 0.036 27.5 25.9 245 54-330 854-1110(1424)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=7.5e-58 Score=475.04 Aligned_cols=242 Identities=33% Similarity=0.508 Sum_probs=220.9
Q ss_pred CCCCCchhhhhCChhHHHHHHHHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHH
Q 039206 367 PKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILL 446 (645)
Q Consensus 367 p~~~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cill 446 (645)
|++.+..+|++|||+||++||++|+++..++|+|+|+||++|||||+||||+++|||+++.+. +++.++..+||+||+|
T Consensus 11 ~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilL 89 (290)
T PF07899_consen 11 PRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILL 89 (290)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999765 7788899999999999
Q ss_pred HHhhhhcCCCCChhhHHHHHHHHHHHHHhc-cccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHh
Q 039206 447 LEQLSSLAPEINSQVQGEALKVAVEWKKNM-EDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRR 525 (645)
Q Consensus 447 LE~L~~~~p~i~~~vke~A~~lA~~WK~~i-~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~ 525 (645)
||+|+.++|.++|+|+++|+++|.+||++| +.+++++++|+||||||++|||+++||.|||++||..+++|+|+|+||+
T Consensus 90 LE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~ 169 (290)
T PF07899_consen 90 LEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCR 169 (290)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHH
Confidence 999999999999999999999999999999 7778899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchhhhh------hhccc----------cccCChhhHHHHHHHHHHHHHhhhh---------hhhchhhH-HH
Q 039206 526 SLGFADEVPVMHHE------QLSDV----------ASEINPLVRDEAMKVAGEWKEKMRA---------AVENSLEV-LG 579 (645)
Q Consensus 526 ~lgl~~ki~~~v~~------~i~Av----------~f~~~pllk~~a~k~a~~wk~~~~~---------~~~~~lea-~~ 579 (645)
+|||++||||+|++ ||+|| .|.|+|+|++|++.....|+..... +.+.++.| ++
T Consensus 170 sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~~a~~ea~~kel~aL~~ 249 (290)
T PF07899_consen 170 SLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSSEAQNEANEKELAALKS 249 (290)
T ss_pred HcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999998 99999 3357899999998766666643321 11234555 59
Q ss_pred HHHHHHHhCCCCCCChhhHHHHHHHHHhcc
Q 039206 580 LLHLLGAFRLAPAFDGNELESLLAIVAEDR 609 (645)
Q Consensus 580 ~L~~I~~y~L~s~f~~d~L~k~v~~~a~~k 609 (645)
+++||++|+|+++||.+.|.+++.++.+.+
T Consensus 250 vikcIee~kLes~~~~~~l~kri~~Lek~~ 279 (290)
T PF07899_consen 250 VIKCIEEHKLESEFPLEPLQKRIEQLEKQK 279 (290)
T ss_pred HHHHHHHhccccccChHHHHHHHHHHHHHH
Confidence 999999999999999999999999998654
No 2
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=99.89 E-value=1.5e-23 Score=218.57 Aligned_cols=111 Identities=43% Similarity=0.681 Sum_probs=104.3
Q ss_pred hhhhhhhccccccCChhhHHHHHHHHHHHHHhh-hhhhhchhhHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhccchHH
Q 039206 535 VMHHEQLSDVASEINPLVRDEAMKVAGEWKEKM-RAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPK 613 (645)
Q Consensus 535 ~~v~~~i~Av~f~~~pllk~~a~k~a~~wk~~~-~~~~~~~lea~~~L~~I~~y~L~s~f~~d~L~k~v~~~a~~k~~~~ 613 (645)
.++.+++..+.+.++|.+++.|+++|.+||.++ +.++.++++|+|||+||++|||.++||.++|+++|..+++|+|||+
T Consensus 87 ilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~ 166 (290)
T PF07899_consen 87 ILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPE 166 (290)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHH
Confidence 345567777788999999999999999999999 6677899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccchhHHHHHHhccccchhcccC
Q 039206 614 LCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK 645 (645)
Q Consensus 614 l~~~lgl~~k~p~~i~~l~~~~~~~~av~~~~ 645 (645)
||++|||++||||+|++||++||||+||+||.
T Consensus 167 L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~ 198 (290)
T PF07899_consen 167 LCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY 198 (290)
T ss_pred HHHHcCchhhhHHHHHHHHHCCCccchHHHHH
Confidence 99999999999999999999999999999973
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.88 E-value=5.7e-19 Score=216.36 Aligned_cols=417 Identities=21% Similarity=0.255 Sum_probs=302.5
Q ss_pred HHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 39 TLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA 116 (645)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~ 116 (645)
.+..++..+..+...+..++ +..++..+...+. ++...++....+++.+...+.....+++.+...+..+..++.
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE---ELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888 8888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 117 CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE 196 (645)
Q Consensus 117 ~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE 196 (645)
.+..++..++.++......+..+++.+..++..+...... .+.++..+..+.+++.....++..++.++..+....+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK---RQALQEELEELEEELEEAERRLDALERELESLEQRRE 824 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887777777765521 1346677777777887777777777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206 197 ACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276 (645)
Q Consensus 197 ~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~ 276 (645)
.+..++..+..++..++..+......+..++..+.++..++..++.++..+...+...+.+...+.+++..+...+..+.
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777766666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHH-hHH-HHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHhhhhh
Q 039206 277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEK-ELI-SVGKSIRQFEERVREFELRE----REFDSLRKAVEDSSK 350 (645)
Q Consensus 277 ~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~-el~-~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~~~~~ 350 (645)
..+......+..+..........++.....+..... .+. .++.++..++.++..|+||| ++|+++..++ .
T Consensus 905 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~----~ 980 (1163)
T COG1196 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY----E 980 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHH----H
Confidence 666666555555544444443333333333332111 122 68999999999999999999 9999999999 5
Q ss_pred hHHHhHHhhH----HHHhhCCCCCCchhhhhCChhHHH------HHHHHhhhhhhhhhhhhHHHHhhCC-CchhhHhhhh
Q 039206 351 NLELRQKKLS----DILQLHPKRSAAPENLTSSGRNLQ------ILLNQHLRRHDVIFCNVFDTIRKAA-DPALLVLDAM 419 (645)
Q Consensus 351 el~~k~~~l~----~~i~~~p~~~l~~lc~~md~~~L~------~~i~~~~ke~~~lr~e~~~AL~~a~-dPa~LVLd~~ 419 (645)
.|..+...+. ...+.. ..||..... ..|+.||+.++ . ...+ +-|.|+|+-.
T Consensus 981 ~l~~~~~dl~~a~~~l~~~i---------~~~d~~~~~~f~~~f~~In~~F~~if---~------~L~~GG~a~L~l~~~ 1042 (1163)
T COG1196 981 ELKSQREDLEEAKEKLLEVI---------EELDKEKRERFKETFDKINENFSEIF---K------ELFGGGTAELELTEP 1042 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH---H------HhCCCCeeEEEeCCC
Confidence 6666655441 111222 334444433 45677776666 3 4456 4899999999
Q ss_pred cCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHh
Q 039206 420 SGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAA 495 (645)
Q Consensus 420 e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ 495 (645)
.+||.+|.. |.++. +.=|..| +||+++|.|++||+.|..
T Consensus 1043 dd~l~~Giei~a~ppgK~----------~~~l~~L---------------------------SGGEKsLtAlAllFAi~~ 1085 (1163)
T COG1196 1043 DDPLTAGIEISARPPGKK----------LQSLSLL---------------------------SGGEKSLTALALLFAIQK 1085 (1163)
T ss_pred CchhhcCcEEEEECCCCC----------ccchhhc---------------------------CCcHHHHHHHHHHHHHHh
Confidence 999887753 33333 1123444 899999999999999999
Q ss_pred hcCCCCCChHHHHHHHHhhhccccc
Q 039206 496 YKLASAFDGNELASLLDIVANHRQT 520 (645)
Q Consensus 496 ygi~~~f~~del~~l~~~v~~~~~~ 520 (645)
|.|+|+|-.||++..+|.+...+.+
T Consensus 1086 ~~PaPf~vLDEVDAaLD~~Nv~r~~ 1110 (1163)
T COG1196 1086 YRPAPFYVLDEVDAALDDANVERVA 1110 (1163)
T ss_pred hCCCCeeeeccchhhccHHHHHHHH
Confidence 9999999999999999987665544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=5.9e-15 Score=181.32 Aligned_cols=417 Identities=18% Similarity=0.231 Sum_probs=217.5
Q ss_pred HHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 39 TLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA 116 (645)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~ 116 (645)
.+...++.+..++..+...+ ++..+..+...+. .+...+......+......+..+..++..+...+..+...+.
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~---~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 754 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555 5555555555555 555555555555555555555555555555555555555666
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 117 CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE 196 (645)
Q Consensus 117 ~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE 196 (645)
....++..+...+.....++..++.++..++.++.... + ..+..++..++.++..+...+..++.++..+..++.
T Consensus 755 ~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~--~---~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 829 (1164)
T TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--I---PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665656666555555544332111 0 012333444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206 197 ACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276 (645)
Q Consensus 197 ~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~ 276 (645)
.++.++..+..++..+...+......+..+...+.++..++..++.++..+..++..+...+.....++..+..++..+.
T Consensus 830 ~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~ 909 (1164)
T TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443444444443333333333333333333333333333333333333333333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH------HHHhHHHHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHh
Q 039206 277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQV------KEKELISVGKSIRQFEERVREFELRE----REFDSLRKAVE 346 (645)
Q Consensus 277 ~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~------ke~el~~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~ 346 (645)
..+......+..+...+..+...+..+...... ...++..+..++..+..++..++|+| .+|+++..++
T Consensus 910 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~- 988 (1164)
T TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL- 988 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Confidence 444444444444444333333333332222110 11246788889999999999999999 9999998888
Q ss_pred hhhhhHHHhHHhh-------HHHHhhCCCCCCchhhhhCChhHHH--HHHHHhhhhhhhhhhhhHHHHhhCCCchhhHhh
Q 039206 347 DSSKNLELRQKKL-------SDILQLHPKRSAAPENLTSSGRNLQ--ILLNQHLRRHDVIFCNVFDTIRKAADPALLVLD 417 (645)
Q Consensus 347 ~~~~el~~k~~~l-------~~~i~~~p~~~l~~lc~~md~~~L~--~~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd 417 (645)
..+..+...+ .+.|... ...|...-.. .-|+.+|..++ . -|- .+-|.|+|+
T Consensus 989 ---~~l~~q~~dl~~~~~~l~~~i~~l--------~~~~~~~f~~~f~~~~~~f~~~~---~----~l~--~~~~~l~~~ 1048 (1164)
T TIGR02169 989 ---DELKEKRAKLEEERKAILERIEEY--------EKKKREVFMEAFEAINENFNEIF---A----ELS--GGTGELILE 1048 (1164)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH---H----HHh--CCeEEEEec
Confidence 3444443333 3333222 1112211111 34566665544 2 222 566888887
Q ss_pred hhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Q 039206 418 AMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLL 493 (645)
Q Consensus 418 ~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~l 493 (645)
...++|.+|.. |+++. ..-+..| ++|+.++.++||++.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~l---------------------------Sgge~~~~~la~~~~~ 1091 (1164)
T TIGR02169 1049 NPDDPFAGGLELSAKPKGKP----------VQRLEAM---------------------------SGGEKSLTALSFIFAI 1091 (1164)
T ss_pred CCCCcccCCeEEEEEcCCCC----------CCcchhc---------------------------CcchHHHHHHHHHHHH
Confidence 76666655431 11110 0001122 7899999999999999
Q ss_pred HhhcCCCCCChHHHHHHHHhhhccccch
Q 039206 494 AAYKLASAFDGNELASLLDIVANHRQTP 521 (645)
Q Consensus 494 a~ygi~~~f~~del~~l~~~v~~~~~~~ 521 (645)
..|.++|++=.||++..++.+.....+.
T Consensus 1092 ~~~~~~~~~~lDE~~~~ld~~~~~~~~~ 1119 (1164)
T TIGR02169 1092 QRYKPSPFYAFDEVDMFLDGVNVERVAK 1119 (1164)
T ss_pred HhcCCCCcEEecccccccCHHHHHHHHH
Confidence 9999999999999999998876555443
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.66 E-value=1.1e-12 Score=160.98 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=87.1
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCC---hhHHHH
Q 039206 313 ELISVGKSIRQFEERVREFELRE----REFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSS---GRNLQI 385 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md---~~~L~~ 385 (645)
.+..+...|..+..++.++++++ .+|+.+...+ .+|.....+|...|...-.. ..+.. ..+ ..
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~----~dL~~~~~~L~~~i~~i~~~-----~~~~f~~~~~~-F~ 1035 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERY----DFLTAQKEDLTEAKETLEEA-----IEEIDREARER-FK 1035 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HH
Confidence 45566677777777777777777 7777777777 56666666665555443000 01111 111 12
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhh
Q 039206 386 LLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQV 461 (645)
Q Consensus 386 ~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~v 461 (645)
-|+.||..++ ..++.-|-. -+-|.|.|+...+||..|.. +.++. -..+.+|
T Consensus 1036 ~v~~~f~~~F---~~lf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l----------- 1090 (1179)
T TIGR02168 1036 DTFDQVNENF---QRVFPKLFG-GGEAELRLTDPEDLLEAGIEIFAQPPGKK----------NQNLSLL----------- 1090 (1179)
T ss_pred HHHHHHHHHH---HHHHHHHhC-CCeEEEEeCCCCcccccCceEEEeCCCCc----------ccccccc-----------
Confidence 3566666655 444444431 13367777766777666542 11100 0011122
Q ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhcc
Q 039206 462 QGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANH 517 (645)
Q Consensus 462 ke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~ 517 (645)
++|....-++++.+.+..+++++.+=.||...-++.....
T Consensus 1091 ----------------S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~ 1130 (1179)
T TIGR02168 1091 ----------------SGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVE 1130 (1179)
T ss_pred ----------------CccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHH
Confidence 6677777788887777778888887777777666654443
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.5e-11 Score=139.08 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=95.6
Q ss_pred HHhhHHHHHHHHHHhhhhH---HhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCChhHHH------HHH
Q 039206 317 VGKSIRQFEERVREFELRE---REFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQ------ILL 387 (645)
Q Consensus 317 v~~~i~~le~~~~eLE~~n---~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md~~~L~------~~i 387 (645)
++.+|......+..+-|.- +.||+++ +..-..|.+-.++.-.-.-+.+ .+...+-.. .+|
T Consensus 934 L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F---------~~VK~~R~~~F~~~F~~v 1002 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAF---------NKVKKKRYERFMACFEHV 1002 (1141)
T ss_pred HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4444445555555554443 5666666 4444444444443322222233 333333333 344
Q ss_pred HHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHH
Q 039206 388 NQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQG 463 (645)
Q Consensus 388 ~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke 463 (645)
++|...+. .++. .+.+.|-|+||+.+.||..|.+ |..|-| -=|++|
T Consensus 1003 a~~Id~IY---K~Lt----nt~g~AyL~~en~~EPyl~GIky~~~pP~KRF----------r~m~~L------------- 1052 (1141)
T KOG0018|consen 1003 ADNIDRIY---KELT----NTEGQAYLGLENPEEPYLDGIKYHCMPPGKRF----------RPMDNL------------- 1052 (1141)
T ss_pred HHHHHHHH---HHhc----ccccceeecCCCCCcchhcCccccccCCcccc----------Cchhhc-------------
Confidence 55544433 4444 4558899999999999998864 212221 113445
Q ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHH
Q 039206 464 EALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLR 524 (645)
Q Consensus 464 ~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~ 524 (645)
+||++.+.|||+||.+-+|.|+|+|-.|||+.-++...-.+.+.=.|
T Consensus 1053 --------------SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1053 --------------SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred --------------CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence 89999999999999999999999999999999999876666665444
No 7
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2e-09 Score=125.72 Aligned_cols=420 Identities=16% Similarity=0.198 Sum_probs=241.1
Q ss_pred HHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 039206 38 ETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCN--- 112 (645)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~--- 112 (645)
+.+++.+......+..+..++ +++++-.+|.++. +++.++++......+....++-++..|...++...-..
T Consensus 781 ~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~---~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 781 EKLERALSKMSDKARQHQEQLHELEERVRKLRERIP---ELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence 445566666667777777776 8899999999998 88888999999888888888888888888777732222
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 113 FELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASI 191 (645)
Q Consensus 113 ~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel 191 (645)
+.+..+++.++.++.++++.+.+-.. +.++..+...|...+ +-++ + -+..++.+...|..++..|....-.|...
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q--~-qk~kv~~~~~~~~~l~~~i~k~~~~i~~s 933 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQ--A-QKDKVEKINEQLDKLEADIAKLTVAIKTS 933 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhH--H-hHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 23445556667777777776533333 667777777777666 2111 1 33444445445555555444443334444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 192 RAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKERE 271 (645)
Q Consensus 192 ~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E 271 (645)
...|..++..+.++...+...+.+++.+..++..+..+..+++.++.+..+-+.+.++++..+..+++...+....+..+
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555666666666666666666666666666666666666666666666666666666666666663
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchh-------------hhHHHH--hH--HHHHhhHHHHHHHHHHh-hh
Q 039206 272 FCRIQERIEESSQELLLKENQLKSVLACIEDCSKE-------------DQVKEK--EL--ISVGKSIRQFEERVREF-EL 333 (645)
Q Consensus 272 ~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e-------------~~~ke~--el--~~v~~~i~~le~~~~eL-E~ 333 (645)
.-.+...++....++.+.+..+..+.+.+..+..- ....+. ++ +.+.++|..++.++.++ ++
T Consensus 1014 rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~v 1093 (1293)
T KOG0996|consen 1014 RIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREV 1093 (1293)
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCC
Confidence 33355555555555555555555444332211110 000111 11 12566788899999999 44
Q ss_pred hH---HhhHHHHHHHhhhhhhHHH---hHHhhHHHHhhCCCCCCchhhhhCChhHHHHHHHHhhhhhhhhhhhhHHHHhh
Q 039206 334 RE---REFDSLRKAVEDSSKNLEL---RQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRK 407 (645)
Q Consensus 334 ~n---~e~~~~~~~~~~~~~el~~---k~~~l~~~i~~~p~~~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~~AL~~ 407 (645)
-. .+|.....-|.....+|+. ++....+..+.. --..|-+=|.|- .+|..++++.+.+= -
T Consensus 1094 d~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~L---rk~RldEFm~gf---~~Is~kLkemYQmI-------T- 1159 (1293)
T KOG0996|consen 1094 DLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEEL---RKRRLDEFMAGF---NIISMKLKEMYQMI-------T- 1159 (1293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHH-------h-
Confidence 33 5665544444333333322 111111000000 000111223332 45777777766221 1
Q ss_pred CCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhcc-ccCCchHHH
Q 039206 408 AADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNME-DTVKDSLVV 486 (645)
Q Consensus 408 a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~-~~~~~sl~a 486 (645)
--+-|.|=|=---+||..|.. |. ..+|. ..||.--. +||++.|.-
T Consensus 1160 ~GGdAeLElVDslDPFseGV~-----FS----------------VrPpK-------------KSWK~I~NLSGGEKTLSS 1205 (1293)
T KOG0996|consen 1160 LGGDAELELVDSLDPFSEGVM-----FS----------------VRPPK-------------KSWKNISNLSGGEKTLSS 1205 (1293)
T ss_pred cCCcceeEeeccCCCcccCce-----EE----------------eeCch-------------hhhhhcccCCcchhHHHH
Confidence 113344433333456666642 00 01111 34765433 688999999
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHH
Q 039206 487 LGFLHLLAAYKLASAFDGNELASLLD 512 (645)
Q Consensus 487 l~fL~~la~ygi~~~f~~del~~l~~ 512 (645)
|||.|+|--|.|.|.|--|||+.-++
T Consensus 1206 LALVFALH~YkPTPlYVMDEIDAALD 1231 (1293)
T KOG0996|consen 1206 LALVFALHHYKPTPLYVMDEIDAALD 1231 (1293)
T ss_pred HHHHHHHHccCCCCceehhhHHHhhc
Confidence 99999999999999999999996554
No 8
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.9e-09 Score=124.07 Aligned_cols=366 Identities=17% Similarity=0.201 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhch
Q 039206 81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLK 160 (645)
Q Consensus 81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k 160 (645)
+.....++++..+++..+.+|++.+..+..+...+..++..|..-. ..+.+++..++++|......++.....++
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~---~~re~rlkdl~keik~~k~~~e~~~~~~e-- 811 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK---ANRERRLKDLEKEIKTAKQRAEESSKELE-- 811 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344555666666677777777777777777777766666655433 34556666677777777777666653232
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
+ -....+-+..+.+.+++.+...+.++..+...++.+..++..+...+...+.......+++.....++..++.++..+
T Consensus 812 k-~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 812 K-RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 1 123346677777777777777777777778888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhh
Q 039206 241 EDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKS 320 (645)
Q Consensus 241 r~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~ 320 (645)
-...+....+......++..+..++..+.++.......++.+..+..=+..+-..+ -..-...+=...+..+...+
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~f----gk~gt~yDf~~~~p~~are~ 966 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLF----GKKGTDYDFESYDPHEAREE 966 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhh----cCCCCccccccCCHhHHHHH
Confidence 77777777776666666666666666666666665555555555444444322211 11111111111133334445
Q ss_pred HHHHHHHHHHhhhhH-----HhhHHHHHHHhhhhhhHHHhHHhh---HHHH-hhCCCCCCchhhhhCChhHH------HH
Q 039206 321 IRQFEERVREFELRE-----REFDSLRKAVEDSSKNLELRQKKL---SDIL-QLHPKRSAAPENLTSSGRNL------QI 385 (645)
Q Consensus 321 i~~le~~~~eLE~~n-----~e~~~~~~~~~~~~~el~~k~~~l---~~~i-~~~p~~~l~~lc~~md~~~L------~~ 385 (645)
+.++......|+..- .=++.++..+ .++..++.++ ...| ... ++||-..= |.
T Consensus 967 l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~----~~lk~k~~~Ie~Dk~kI~ktI---------~~lDe~k~~~L~kaw~ 1033 (1174)
T KOG0933|consen 967 LKKLQEKKEKLEKTVNPKNMDMLERAEEKE----AALKTKKEIIEKDKSKIKKTI---------EKLDEKKREELNKAWE 1033 (1174)
T ss_pred HHHhhHHHHHHHhhcCHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 555555555444322 2223333333 4444544443 0111 111 33443221 24
Q ss_pred HHHHhhhhhhhhhhhhHHHHhh-CCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHH
Q 039206 386 LLNQHLRRHDVIFCNVFDTIRK-AADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGE 464 (645)
Q Consensus 386 ~i~~~~ke~~~lr~e~~~AL~~-a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~ 464 (645)
-||..|-.++ ..=+|.|... .|-.++=|||-++--.
T Consensus 1034 ~VN~dFG~IF--s~LLPga~AkL~Ppeg~~~~dGLEvkV----------------------------------------- 1070 (1174)
T KOG0933|consen 1034 KVNKDFGSIF--STLLPGAMAKLEPPEGKTVLDGLEVKV----------------------------------------- 1070 (1174)
T ss_pred HHhhhHHHHH--HHhCCCccccccCCCCCccccceEEEE-----------------------------------------
Confidence 4555554444 1112222211 1111221221111000
Q ss_pred HHHHHHHHHHhcc--ccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhh
Q 039206 465 ALKVAVEWKKNME--DTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIV 514 (645)
Q Consensus 465 A~~lA~~WK~~i~--~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v 514 (645)
++..-||..+. +||.-||-||++++.+-.|.|+|.|=.||++.-+|..
T Consensus 1071 --~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLS 1120 (1174)
T KOG0933|consen 1071 --KFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLS 1120 (1174)
T ss_pred --EeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcch
Confidence 12234888876 5788999999999999999999999999999877754
No 9
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=3.2e-08 Score=113.73 Aligned_cols=412 Identities=17% Similarity=0.197 Sum_probs=220.8
Q ss_pred hhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 42 RSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKE 119 (645)
Q Consensus 42 ~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~ 119 (645)
++.-+++-..+..+.++ ++..++..|+.+. +...+|...-..+..............+.+..++..+..+...++
T Consensus 664 rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~---~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~ 740 (1200)
T KOG0964|consen 664 RSRLELLKNVNESRSELKELQESLDEVRNEIE---DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQ 740 (1200)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344555555666666 6666666777666 666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHH-HH--HHHHHHH
Q 039206 120 KELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQ-KA--SIRAMIE 196 (645)
Q Consensus 120 ~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~eke-ie--el~~eIE 196 (645)
..+.-....++...-.+..++...+..+.++..-- -.++.|+..++.+.+..+|+.+...+..+..+ ++ .....++
T Consensus 741 ~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel-~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le 819 (1200)
T KOG0964|consen 741 ESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL-FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALE 819 (1200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH-HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665554322 12344778888888888888887777643333 11 1111111
Q ss_pred -----HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Q 039206 197 -----ACTEKLEAIEESYDA-----VKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE-- 264 (645)
Q Consensus 197 -----~~e~ei~e~~e~ie~-----le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e-- 264 (645)
.+.-++.++..++.+ ...+++..+.++.....++...-.+++.+++..+....++..+++.++.+..-
T Consensus 820 ~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek 899 (1200)
T KOG0964|consen 820 ANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEK 899 (1200)
T ss_pred HHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222 23445556666666666666666777777777777777766666665554422
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhch---h-hhH-HHHhHHHHHhhHHHHHHHH
Q 039206 265 -----------LELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK---E-DQV-KEKELISVGKSIRQFEERV 328 (645)
Q Consensus 265 -----------le~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~---e-~~~-ke~el~~v~~~i~~le~~~ 328 (645)
++...+....|..+.+ + .-+.|.++.. + +.. .......+..++.++-.++
T Consensus 900 ~~~~~~~~dKe~Ek~~~rk~~Ll~Kre-----------E---~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neel 965 (1200)
T KOG0964|consen 900 EKKDNINFDKELEKLVRRKHMLLKKRE-----------E---CCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEEL 965 (1200)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHH-----------H---HHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 1222222222222111 1 1111111100 0 000 1114566777888888889
Q ss_pred HHhhhhH----H-------hhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCChhHHHHHHHHhhhhhhhh
Q 039206 329 REFELRE----R-------EFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVI 397 (645)
Q Consensus 329 ~eLE~~n----~-------e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md~~~L~~~i~~~~ke~~~l 397 (645)
..+..|| + +.+++..|. .+|.--++...+.|.-.... --+.||. -.+-|..||++++
T Consensus 966 k~ys~VNKkAldQf~nfseQre~L~~R~----eELd~s~~sI~eLi~vLdqr----K~eai~~--TFkqV~knFsevF-- 1033 (1200)
T KOG0964|consen 966 KGYSNVNKKALDQFVNFSEQRESLKKRQ----EELDRSKDSILELITVLDQR----KYEAIDL--TFKQVKKNFSEVF-- 1033 (1200)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHH----HHhccchhHHHHHHHHHHHh----hHHHHHH--HHHHHHHHHHHHH--
Confidence 9999998 2 334455444 33333333332222111000 0022221 2255788888877
Q ss_pred hhhhHHHHhhCC-CchhhHhhhhc---------CCCCCCCCCCcccc-----hhhH-----hHHHHHHHHHhhhhcCCCC
Q 039206 398 FCNVFDTIRKAA-DPALLVLDAMS---------GFYPPHSREGYVEF-----DVSI-----IRRTCILLLEQLSSLAPEI 457 (645)
Q Consensus 398 r~e~~~AL~~a~-dPa~LVLd~~e---------~~~~~~~~~~~~~~-----~~~~-----~r~~cillLE~L~~~~p~i 457 (645)
. ++.| +.|.+|...=. |-+.+.+.. ++++ +..+ ....=-+.|++|
T Consensus 1034 -~------~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~-~~~sv~~ytGIsI~VSFnskq~E~~~m~QL------- 1098 (1200)
T KOG0964|consen 1034 -S------RLVPGGTALIIMRKRDNANDHDEDDGDMDGESNE-GKDSVEMYTGISIKVSFNSKQGETLEMEQL------- 1098 (1200)
T ss_pred -H------HhCCCCceeehhhccccccccccccccccccccc-cccchhhccceeEEEEeecCccHHHHHHHh-------
Confidence 4 6666 45655553322 111111100 0000 0000 011124455566
Q ss_pred ChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccc
Q 039206 458 NSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQT 520 (645)
Q Consensus 458 ~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~ 520 (645)
+||.+++-|+++++.++.-.|||+|=.|||+.-++. +|+.+
T Consensus 1099 --------------------SGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDa--QyR~a 1139 (1200)
T KOG0964|consen 1099 --------------------SGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDA--QYRTA 1139 (1200)
T ss_pred --------------------cCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccH--HHHHH
Confidence 899999999999999999999999999999988875 44444
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.34 E-value=1.8e-08 Score=124.36 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=64.6
Q ss_pred HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
-+.+...+..+..+...+..++ ++..+..++..+. .+..++...+..++....++..+...+..++..+..+..+
T Consensus 683 l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~---~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~e 759 (1164)
T TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG---EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777666 6667766666666 5666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206 115 LACKEKELGFVRKRIGVCNSELQSKEDEL 143 (645)
Q Consensus 115 ~~~~~~el~~l~~~i~e~~~el~~le~eL 143 (645)
+.....++..+...+.....++..++..+
T Consensus 760 l~~l~~~i~~l~~~i~~l~~el~~l~~~~ 788 (1164)
T TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARL 788 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544433
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.33 E-value=2e-08 Score=123.75 Aligned_cols=275 Identities=21% Similarity=0.286 Sum_probs=114.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhh
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRL 157 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~l 157 (645)
.++......+..+...+..+..+++.++.++..+..++.....++..+...+......+..++..+..+..++......+
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 798 (1179)
T TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444443434444444444444443333333333333333333333322222111
Q ss_pred hchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 158 NLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL 237 (645)
Q Consensus 158 e~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El 237 (645)
. ++..++.+++.++..+..++.....++..+..++..+..++.....++..+...+......+..++..+.++..++
T Consensus 799 ~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (1179)
T TIGR02168 799 K---ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875 (1179)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 1333333444444444444433333333444444444444444444444433333333333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHH-H---Hh
Q 039206 238 RLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVK-E---KE 313 (645)
Q Consensus 238 ~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~k-e---~e 313 (645)
..+..++..+..++..+...+.....++.....++..+...+..+..++..+..++..+...+.+....+... . .+
T Consensus 876 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~ 955 (1179)
T TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 4444444444444434433344444444333333333333344444444444433333333333211111100 0 01
Q ss_pred HHH----HHhhHHHHHHHHHHhhhhHHhhHHHH----HHHhhhhhhHHHhHHhh
Q 039206 314 LIS----VGKSIRQFEERVREFELREREFDSLR----KAVEDSSKNLELRQKKL 359 (645)
Q Consensus 314 l~~----v~~~i~~le~~~~eLE~~n~e~~~~~----~~~~~~~~el~~k~~~l 359 (645)
... +...+..+...+..|++..++|+++. .++ ..+..+...|
T Consensus 956 ~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~----~~l~~q~~dL 1005 (1179)
T TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY----EELKERYDFL 1005 (1179)
T ss_pred HHhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHHHHHHHH
Confidence 111 35567788888888888778887777 666 4555544444
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.33 E-value=5e-08 Score=117.57 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206 109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146 (645)
Q Consensus 109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~l 146 (645)
+.+...+...+.+++.+...+......+...+..++..
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444333333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.30 E-value=3.6e-08 Score=118.84 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=9.7
Q ss_pred hHHHHHhhhcchHhhhhhHH
Q 039206 36 KKETLRRSFDLPHEQLGLFT 55 (645)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ 55 (645)
+++.+...+.+++..+....
T Consensus 315 ~~~~l~~k~~el~~~l~~~~ 334 (880)
T PRK02224 315 RREELEDRDEELRDRLEECR 334 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554333
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.12 E-value=2.5e-06 Score=105.75 Aligned_cols=234 Identities=23% Similarity=0.310 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHHHHHHHhHHHHHH
Q 039206 98 ESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQKRLESLDGEVRE 176 (645)
Q Consensus 98 ~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~~~ieei~~eI~~ 176 (645)
..++......++.+...+...+.+++.+...+.....++..++.++.++..++.... ..+. ++..+.++.+++..
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~le~~~~~ 306 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE----LKEEIEELEGEISL 306 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 356666666777777777777777777777777777777777777777777776664 2122 55567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 039206 177 SEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR----LYEDNLQSLQSTVR 252 (645)
Q Consensus 177 ~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~----~lr~e~e~l~eel~ 252 (645)
+..++.....++......+..++.++......+................+.....+.+.... ..........+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1163)
T COG1196 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777766666555555555555555555554444422222222222222222222222222 22223333333444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206 253 LRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE 332 (645)
Q Consensus 253 ~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE 332 (645)
.+..++.....+++.+..+++.+..++.++...++.+..++.+...++.+...++.....++..+...++.+...+.+++
T Consensus 387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (1163)
T COG1196 387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE 466 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhH
Q 039206 333 LRE 335 (645)
Q Consensus 333 ~~n 335 (645)
..-
T Consensus 467 ~~~ 469 (1163)
T COG1196 467 REL 469 (1163)
T ss_pred HHH
Confidence 444
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.2e-05 Score=98.71 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-------hhhhchHHHHHHHHHhHHHHHHHHHHH
Q 039206 109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-------KRLNLKKEKQKRLESLDGEVRESEKEL 181 (645)
Q Consensus 109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-------~~le~k~el~~~ieei~~eI~~~e~~i 181 (645)
++++.++..+..++..+...++....+...++.+|..+...+...+ ..+..++.+..+++++..++..+...|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444445555555555555533333222 334444567777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 182 VLMKEQKASIRAMIEACTEKLEAIEESYDAV 212 (645)
Q Consensus 182 e~~ekeieel~~eIE~~e~ei~e~~e~ie~l 212 (645)
..++.++..+...++.+..+..++.......
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1311)
T TIGR00606 905 KDAKEQDSPLETFLEKDQQEKEELISSKETS 935 (1311)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666665555544443
No 16
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.96 E-value=7.2e-05 Score=88.47 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=35.5
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhcc
Q 039206 478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANH 517 (645)
Q Consensus 478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~ 517 (645)
+||+.|....+||+.|-.--=.|+.-.||.+-|.|+|.+.
T Consensus 991 SGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRK 1030 (1074)
T KOG0250|consen 991 SGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRK 1030 (1074)
T ss_pred CcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHH
Confidence 6889999999999999888888999999999888888654
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=2.2e-05 Score=98.57 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhh
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV------RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLN 158 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l------~~~i~e~~~el~~le~eL~~le~ei~~~~~~le 158 (645)
..+..+...+..++.++..++..++++...+.....+++.+ -..|+....++..++..|..++.+....+...
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~- 822 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR- 822 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-
Confidence 33444444444444444444444444444444444444333 22345557777777777777777666444210
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206 159 LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE----------AIEESYDAVKAKLESEKRELELTQT 228 (645)
Q Consensus 159 ~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~----------e~~e~ie~le~eIee~e~ELeel~~ 228 (645)
.-.++..++..++.+++.+...++.+..+.+.++.+|..++.++. ........++..++++..++..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112455666666666666655555544444444444444422222 2222333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 229 FMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 229 ~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
.+.+++.++..+...+..+..++..+.
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.94 E-value=1.7e-05 Score=99.83 Aligned_cols=206 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
.+...++....+++....+-..++.+....+.++.++.+.+++++..+.++..+......++..+++++..++..+....
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444444444445555555555555555555555554444444444444444444433332
Q ss_pred hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 155 KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL 234 (645)
Q Consensus 155 ~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele 234 (645)
. .++++...+.++...+...+.....+.+....+...++.++..+........+++.....++.++...+..+.++.
T Consensus 985 k---ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~ 1061 (1930)
T KOG0161|consen 985 K---EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELK 1061 (1930)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1 1233444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS 283 (645)
Q Consensus 235 ~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~ 283 (645)
.....+..++.....++..+..+++.....+..++..+..+..++..+.
T Consensus 1062 ~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1062 KQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333333333333333333333333
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=98.91 E-value=3e-05 Score=94.03 Aligned_cols=33 Identities=6% Similarity=0.323 Sum_probs=20.7
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206 313 ELISVGKSIRQFEERVREFELREREFDSLRKAV 345 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~ 345 (645)
.+..+..++..+...+.+++....+|.++...+
T Consensus 523 ~~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~ 555 (895)
T PRK01156 523 KIESARADLEDIKIKINELKDKHDKYEEIKNRY 555 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666555
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.90 E-value=2.5e-05 Score=91.61 Aligned_cols=266 Identities=16% Similarity=0.210 Sum_probs=121.7
Q ss_pred HHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcC---CchHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 28 VELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQS---SSSIDVDMKIRLLDERAKEIENKESELV 102 (645)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~---~~~~~v~~~~~~~ee~~~~~e~~~~eie 102 (645)
..|+++..--+++..++..|++++ -...++ +..+++.......--. -+..++.++..+.+....+++.+.+.++
T Consensus 60 ~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE 138 (775)
T PF10174_consen 60 EQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE 138 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777777776 333333 3333333332222000 1223444444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------HhHHHHhhHHHHHHHHHHhhhhchhhh------------
Q 039206 103 LVEKKIKDCNFELACKEKELGFVRKRIG-------------VCNSELQSKEDELNLVKNSAEKWPKRL------------ 157 (645)
Q Consensus 103 ~~e~~lee~~~e~~~~~~el~~l~~~i~-------------e~~~el~~le~eL~~le~ei~~~~~~l------------ 157 (645)
..+..++.+...+....+++..+...+. ...+.+...+..+..++.-++.++.+.
T Consensus 139 ~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~ 218 (775)
T PF10174_consen 139 ELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQ 218 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Confidence 5555555555555555555555544431 122234444455555555555554222
Q ss_pred -hchH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206 158 -NLKK----EKQKRLESLDGEVRESEKELVLMKEQKASIR--------------AMIEACTEKLEAIEESYDAVKAKLES 218 (645)
Q Consensus 158 -e~k~----el~~~ieei~~eI~~~e~~ie~~ekeieel~--------------~eIE~~e~ei~e~~e~ie~le~eIee 218 (645)
.-.| -+..-|+.....|..+++.++.++.+|..++ .+++.....-...+.+++.+..++..
T Consensus 219 ~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 219 MERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1111 1334456666666666666666555554222 23333333333334344444444444
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 219 EKRELELTQTFMKDL-------LVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKEN 291 (645)
Q Consensus 219 ~e~ELeel~~~i~el-------e~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~ 291 (645)
+..++..++.++..+ ...|..++..+.....+...++.+++.++.++++....++.....+.....+......
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~ 378 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQG 378 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 3344444444444444444444444444444444444444444444333333333333
Q ss_pred hHH
Q 039206 292 QLK 294 (645)
Q Consensus 292 el~ 294 (645)
++.
T Consensus 379 Ei~ 381 (775)
T PF10174_consen 379 EIE 381 (775)
T ss_pred HHH
Confidence 333
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.89 E-value=5.4e-05 Score=95.44 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhhhhcCCCCChhh---HHHHHHHHHHHHHhccccC
Q 039206 439 IRRTCILLLEQLSSLAPEINSQV---QGEALKVAVEWKKNMEDTV 480 (645)
Q Consensus 439 ~r~~cillLE~L~~~~p~i~~~v---ke~A~~lA~~WK~~i~~~~ 480 (645)
.+.-|-.|-++|-.- ...-... --+|..-+..|+.++...+
T Consensus 1327 l~~e~~~l~e~leee-~e~~~~l~r~lsk~~~e~~~~~~k~e~~~ 1370 (1930)
T KOG0161|consen 1327 LEHELDLLREQLEEE-QEAKNELERKLSKANAELAQWKKKFEEEV 1370 (1930)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455676676666320 0011111 1234555778999987543
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.00023 Score=86.33 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhhh
Q 039206 59 IQELFDLTMKSLE 71 (645)
Q Consensus 59 ~e~~~~~~r~~~~ 71 (645)
+...+.++...+.
T Consensus 368 l~~~l~~~~~~~~ 380 (895)
T PRK01156 368 YLKSIESLKKKIE 380 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=98.85 E-value=5.9e-05 Score=91.16 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=4.8
Q ss_pred HhHHHHHHHHHHH
Q 039206 78 IDVDMKIRLLDER 90 (645)
Q Consensus 78 ~~v~~~~~~~ee~ 90 (645)
.++..++.+++.+
T Consensus 207 ~ei~~l~~e~~~l 219 (880)
T PRK03918 207 REINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.84 E-value=2.7e-06 Score=87.30 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhch
Q 039206 81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLK 160 (645)
Q Consensus 81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k 160 (645)
..++..++....++......+..+++..++.++.+..++........+|+.+...+..........+....
T Consensus 46 ~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~--------- 116 (237)
T PF00261_consen 46 QLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE--------- 116 (237)
T ss_dssp HHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 33333333333333333344444444444444444444444444444444433333333333333333222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEE 207 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e 207 (645)
++.+++..+.+.+.+++.+.+..+..+..+..++....+.+..+..
T Consensus 117 -E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 117 -EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 1333444444444444444444444444444444444444333333
No 25
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.79 E-value=7.8e-05 Score=85.96 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206 223 LELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIED 302 (645)
Q Consensus 223 Leel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~ 302 (645)
...+...+.++.+.+..+..........+..+...++...++++.+..+...+...+..+.....+.+..+..++..+.+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555666666666666666666666666666666666666666666665
Q ss_pred hchhhhH---------HHHhHHHHHhhHHHHHHHHHHhhhhH-----HhhHHHHHHHhhhhhhHHHhHHhh
Q 039206 303 CSKEDQV---------KEKELISVGKSIRQFEERVREFELRE-----REFDSLRKAVEDSSKNLELRQKKL 359 (645)
Q Consensus 303 ~~~e~~~---------ke~el~~v~~~i~~le~~~~eLE~~n-----~e~~~~~~~~~~~~~el~~k~~~l 359 (645)
....+.. .-..+..+...+..+...+.. +|+| .+|+++..++ ..|..+...+
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~----~~L~~q~~dL 495 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDV----ETLEEETEEL 495 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 5544333 112566788999999999999 9999 4888898888 5555554444
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.74 E-value=6.2e-05 Score=89.04 Aligned_cols=184 Identities=17% Similarity=0.300 Sum_probs=82.8
Q ss_pred HhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039206 136 LQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAK 215 (645)
Q Consensus 136 l~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~e 215 (645)
+.....++.+.+.+|...+. -.+.+++++++..+.++....++ .+.+..+..+..+......+++...+.
T Consensus 276 V~~~~~ql~~~~~~i~~~qe---k~~~l~~ki~~~~~k~~~~r~k~-------teiea~i~~~~~e~~~~d~Ei~~~r~~ 345 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQE---KVDTLQEKIEEKQGKIEEARQKL-------TEIEAKIGELKDEVDAQDEEIEEARKD 345 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33444555555555544331 01234444444444444444333 333344444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206 216 LESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKS 295 (645)
Q Consensus 216 Iee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~ 295 (645)
+...+.+...++..+.+....+..++..++.+.+.+..+.++. -+++..++......++.+..+++.++.++.+
T Consensus 346 ~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~ 419 (1074)
T KOG0250|consen 346 LDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINS 419 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555544443333 0333334444444444444444444444444
Q ss_pred HHHhhhhhchhhhHHHH-------hHHHHHhhHHHHHHHHHHhhhhH
Q 039206 296 VLACIEDCSKEDQVKEK-------ELISVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 296 ~~~~i~~~~~e~~~ke~-------el~~v~~~i~~le~~~~eLE~~n 335 (645)
+++++..+..++...+. .+..+...|......+++|...+
T Consensus 420 L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 420 LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444444333 44444444445544555554443
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=0.00014 Score=86.33 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 039206 226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305 (645)
Q Consensus 226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~ 305 (645)
....+..+++++..+-.++.....+++-++++++-+....+...+.++.+..++...+..+.+....+.+.+..|+.++-
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34445555555666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred hhhHHHHhHHHHHhhHH
Q 039206 306 EDQVKEKELISVGKSIR 322 (645)
Q Consensus 306 e~~~ke~el~~v~~~i~ 322 (645)
++...+.++........
T Consensus 557 e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 557 ELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 55555544444444333
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.69 E-value=0.00056 Score=80.53 Aligned_cols=131 Identities=23% Similarity=0.331 Sum_probs=67.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 164 QKRLESLDGEVRESEKELVLMK-------EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVK 236 (645)
Q Consensus 164 ~~~ieei~~eI~~~e~~ie~~e-------keieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~E 236 (645)
+.+++..+.++.+....|..+. .+-.+.+.-|+-+...+.....+.+-+..+++.++.+++.....+..-...
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444333 332244555555555555555555556556665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 039206 237 LRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIE 301 (645)
Q Consensus 237 l~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~ 301 (645)
+..+..+......+ +..+...+...++++..+..+++.+...+.+...++...+..+.
T Consensus 366 ~~~~qeE~~~~~~E-------i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 366 IEKLQEEKSRLQGE-------IEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555 44444444444444444444444444444555555555544444
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.63 E-value=0.0014 Score=73.86 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL 237 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El 237 (645)
...+..++.++....+-..+++...+-+.+.+..++.+...++
T Consensus 306 ~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 306 AELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444433
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.62 E-value=0.00035 Score=74.31 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKK 107 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~ 107 (645)
.+.++.++|..+. ++..+-...+.+++.+..+++.+...++...+.
T Consensus 52 ye~el~~lr~~id---~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~ 97 (312)
T PF00038_consen 52 YEEELRELRRQID---DLSKEKARLELEIDNLKEELEDLRRKYEEELAE 97 (312)
T ss_dssp HHHHHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhh---hHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555 444554444444444444444444444433333
No 31
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.56 E-value=0.002 Score=73.75 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHH
Q 039206 281 ESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEER 327 (645)
Q Consensus 281 ~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~ 327 (645)
.+..++..+.-.+.+.|-+.++++..+...+...+.+..+...+...
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~ 373 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEK 373 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455566666666666666666666665555555555444444433
No 32
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=0.0018 Score=72.31 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=102.2
Q ss_pred HHhhhcchHhhhhhHHHHH-----HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 40 LRRSFDLPHEQLGLFTAQW-----IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-----~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
...+++.+......|..++ ..+.+.++|.++. ++..++.+.+.-+......-....+.++.+..++++-+.+
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~---~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE 309 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKA---RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH---HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555 5667777777777 7777777766666555444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH----------HhHhHHHHhhHHHHHHHHHHhhhhchh-hhhchHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 115 LACKEKELGFVRKR----------IGVCNSELQSKEDELNLVKNSAEKWPK-RLNLKKEKQKRLESLDGEVRESEKELVL 183 (645)
Q Consensus 115 ~~~~~~el~~l~~~----------i~e~~~el~~le~eL~~le~ei~~~~~-~le~k~el~~~ieei~~eI~~~e~~ie~ 183 (645)
++.++.+.+.++.- ++..+.+...+..+|+.++.++..... --+++-++...++++......+..-+..
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 344455555555555555555554441 1111222333334433333222222221
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206 184 ---------------------------------MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM 230 (645)
Q Consensus 184 ---------------------------------~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i 230 (645)
+....+++++++-..++++..++..+.++...|.++...+..++.++
T Consensus 390 i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el 469 (581)
T KOG0995|consen 390 IKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELEL 469 (581)
T ss_pred HHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223355555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 039206 231 KDLLVKLRLYED 242 (645)
Q Consensus 231 ~ele~El~~lr~ 242 (645)
..+++.+...+.
T Consensus 470 ~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 470 KKAESKYELKKE 481 (581)
T ss_pred HHHHHHHHHHHH
Confidence 666555555544
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.53 E-value=0.0016 Score=73.42 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENEL----ECKEKEL 265 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~el----e~~~~el 265 (645)
....+.+.+.+.++....++...+.+..-+..+|......-...-.++...+-+-+.+...+......+ .....+.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666666655555555555555544444443333332222 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHH----HhHHHHHhhHHHHHHHHHHhhhhHHhhHHH
Q 039206 266 ELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKE----KELISVGKSIRQFEERVREFELREREFDSL 341 (645)
Q Consensus 266 e~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke----~el~~v~~~i~~le~~~~eLE~~n~e~~~~ 341 (645)
..++.......+++..++.++..++.-+.+-+.+-..+..+++... +.+.+....+..+...++=+....+++-.-
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E 439 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555555555555555444444444444444311 144455555555555554444444444333
Q ss_pred HHHHhhhhhhHHHhHHhh
Q 039206 342 RKAVEDSSKNLELRQKKL 359 (645)
Q Consensus 342 ~~~~~~~~~el~~k~~~l 359 (645)
++-+..+..-|+.+-+++
T Consensus 440 kQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 440 KQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333335555554444
No 34
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.52 E-value=0.001 Score=69.45 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 209 YDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLL 288 (645)
Q Consensus 209 ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e 288 (645)
+..+.++++..+.+..++..++.++..+..++.+++-...++.+.++++.+..-.++-......+.+...+.....++.+
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555544444433333333333333333333333333344444444444
Q ss_pred HHHhHHHH
Q 039206 289 KENQLKSV 296 (645)
Q Consensus 289 ~e~el~~~ 296 (645)
+...+..+
T Consensus 240 ~~k~ik~l 247 (294)
T COG1340 240 LEKKIKAL 247 (294)
T ss_pred HHHHHHHH
Confidence 44444333
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.48 E-value=0.0026 Score=72.63 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.0
Q ss_pred hhHHHhHHHHhHHH
Q 039206 26 VLVELRVAELKKET 39 (645)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (645)
.+..+++.++.+..
T Consensus 93 e~~k~r~~e~e~~~ 106 (522)
T PF05701_consen 93 ELAKFRAKELEQGI 106 (522)
T ss_pred HHhHHHHHHHhhhh
Confidence 34455555555443
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.46 E-value=0.0001 Score=84.58 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 223 LELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 223 Leel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el 293 (645)
+..+..++.++...+...+..+.+...+...++.+++.+.........++..+...+.....++.+...+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444
No 37
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.44 E-value=0.0027 Score=66.29 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 96 NKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 96 ~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
.+-.+..+....+.++...+..+-.++..++...++.+..+..+-.++..+...++
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455555555555555555555555555555555555555555555
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.42 E-value=0.0067 Score=70.13 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=13.6
Q ss_pred HHhHHHHHhhhcchHhhhh
Q 039206 34 ELKKETLRRSFDLPHEQLG 52 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (645)
=+-+.++.+.++.|+.+-.
T Consensus 21 ~~~rr~~~~~i~~Le~~k~ 39 (569)
T PRK04778 21 LILRKRNYKRIDELEERKQ 39 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777788888877765
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.41 E-value=0.0035 Score=66.73 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 235 ~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el 293 (645)
.++..++.........+...+.++...+..++.+..++..+......+...+.+++..+
T Consensus 195 ~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 195 SKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 34444444444444444444444555555555555555555555555555555554444
No 40
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.38 E-value=0.017 Score=70.36 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHHHHHHhhc-------------CCCCCChHHHHHHHHhhhccccchHHHhhhCCCCCcchhh
Q 039206 478 DTVKDSLVVLGFLHLLAAYK-------------LASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMH 537 (645)
Q Consensus 478 ~~~~~sl~al~fL~~la~yg-------------i~~~f~~del~~l~~~v~~~~~~~~L~~~lgl~~ki~~~v 537 (645)
+||+.-+.+++|=+.|+-|- |-+..|.+-+..+++++-..... .+.+|.+-+++.|.
T Consensus 817 SGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~ 886 (908)
T COG0419 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD---GRQIIIISHVEELK 886 (908)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 56665555555544444332 22344666666666554332222 33445555555444
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=0.0041 Score=73.22 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=29.3
Q ss_pred HHHHhhhh--hhhchhhHHHHHHHHHHhCCCCCCChhhH
Q 039206 562 EWKEKMRA--AVENSLEVLGLLHLLGAFRLAPAFDGNEL 598 (645)
Q Consensus 562 ~wk~~~~~--~~~~~lea~~~L~~I~~y~L~s~f~~d~L 598 (645)
.||.++.. +++.||-|++.|--+=.|+=.|-|-.|++
T Consensus 1075 iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEV 1113 (1174)
T KOG0933|consen 1075 IWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEV 1113 (1174)
T ss_pred cHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhh
Confidence 48888764 44678999988888888999888877775
No 42
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.37 E-value=0.012 Score=74.08 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhh---hch--HHHHHH
Q 039206 92 KEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRL---NLK--KEKQKR 166 (645)
Q Consensus 92 ~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~l---e~k--~el~~~ 166 (645)
..=.-+..+.+.....+.++.+.+..++.++.-++..+.....++.....++.-++.+-.+|.... ..+ .--...
T Consensus 1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~ 1308 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND 1308 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 333345566666666677777777777777777777777777777777777777776666666211 100 001234
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACT 199 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e 199 (645)
+..+..+|+++++.+..++..++++...+..++
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666655555554444444444
No 43
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.36 E-value=0.011 Score=67.46 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 181 LVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTV 251 (645)
Q Consensus 181 ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel 251 (645)
+.....++++.+..|+...+++..+....++++.+++.-+.++..++.+.......+..+..++...+.++
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555555554444444444444444444
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=0.0046 Score=69.26 Aligned_cols=138 Identities=12% Similarity=0.222 Sum_probs=75.8
Q ss_pred hhhHHHHH---HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 51 LGLFTAQW---IQELFDLTMKSLEKQSSSSIDVDMKIRLLDER---AKEIENKESELVLVEKKIKDCNFELACKEKELGF 124 (645)
Q Consensus 51 ~~~~~~~~---~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~---~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~ 124 (645)
-+.+..++ ++..+.++.+.++ ++.+.-+.+..++.++ .+.++.+++....++.++.-++.-..........
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie---~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIE---DLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 34555555 7777777888887 7777777666666654 4456666666666666666555555555555555
Q ss_pred HHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 125 VRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASI 191 (645)
Q Consensus 125 l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel 191 (645)
+.+.++....+++.++.+++.|..+..+...++++..--.++++.++.+...+.+.+..+..+++.+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554444443333222123444444444444444444444443333
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.31 E-value=0.0048 Score=72.46 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhh-chHHHHHHHHHhHHHHHHHHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLN-LKKEKQKRLESLDGEVRESEK 179 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le-~k~el~~~ieei~~eI~~~e~ 179 (645)
+....+.+++++.++.....+.+.+..++..+..++...+.++..++..+...|..+. .+..+..++..++.+.....+
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666666666666552211 122455555555555555555
Q ss_pred HHH
Q 039206 180 ELV 182 (645)
Q Consensus 180 ~ie 182 (645)
.+.
T Consensus 284 ~l~ 286 (650)
T TIGR03185 284 QLR 286 (650)
T ss_pred HHH
Confidence 544
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=0.00052 Score=78.78 Aligned_cols=69 Identities=7% Similarity=0.085 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
+..+.+++.+..++..+..++...+..++.++.... ..++.++.+++....+...++.+++.++.+|.+
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433221 234444444444444444444444444444443
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.27 E-value=0.0029 Score=71.29 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=102.3
Q ss_pred hhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH---------HHHHHHHHHhhhhhcC-----CchHhHHHHHHHHHHHH
Q 039206 26 VLVELRVAELKKETLRRSFDLPHEQLGLFTAQW---------IQELFDLTMKSLEKQS-----SSSIDVDMKIRLLDERA 91 (645)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~~~~~~r~~~~~~~-----~~~~~v~~~~~~~ee~~ 91 (645)
-.+-++-+.++- .+.+.+|.+++.....++ ++-.++.+|.....-. -.+.++.+..+.+++..
T Consensus 29 ~as~ir~sR~rE---K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~ 105 (546)
T KOG0977|consen 29 AASPIRDSRERE---KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETA 105 (546)
T ss_pred chhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHH
Confidence 445555554432 456777777777666555 6667777777655210 12467788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhH
Q 039206 92 KEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLD 171 (645)
Q Consensus 92 ~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~ 171 (645)
++...++.+|..++.+++++....+.........+.++......+..++.++.-+...+..+..++. + |+.+...+.
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~--~-Lk~en~rl~ 182 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK--R-LKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH--H-HHHHhhhhH
Confidence 8888888888888888888888888888888888888888888888888888887777776553222 2 444444444
Q ss_pred HHHHHHHHHH
Q 039206 172 GEVRESEKEL 181 (645)
Q Consensus 172 ~eI~~~e~~i 181 (645)
..|.++.+.+
T Consensus 183 ~~l~~~r~~l 192 (546)
T KOG0977|consen 183 EELARARKQL 192 (546)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 48
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.25 E-value=0.027 Score=71.03 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHhHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM---KDLL----------VKLRLYEDNLQSLQSTVRLREN 256 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i---~ele----------~El~~lr~e~e~l~eel~~~~~ 256 (645)
-+..+++-+.-+...+..+++.+...+++.+..|...+... .... ..+..+++.-.-+.++......
T Consensus 1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~ 1243 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLE 1243 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44445555555566666666666666666666555554433 1111 1111111222222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH--------HHHhHHHHHhhHHHHHHHH
Q 039206 257 ELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQV--------KEKELISVGKSIRQFEERV 328 (645)
Q Consensus 257 ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~--------ke~el~~v~~~i~~le~~~ 328 (645)
.+.++...++.++.++.-+...+..+..++....++++-++.....|+...+. .-.++.++..+|.+++..+
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444433332 1125666666777777766
Q ss_pred HHhhhhH
Q 039206 329 REFELRE 335 (645)
Q Consensus 329 ~eLE~~n 335 (645)
...+..+
T Consensus 1324 ~~ke~~~ 1330 (1822)
T KOG4674|consen 1324 EEKENLI 1330 (1822)
T ss_pred HHHHHHH
Confidence 6555555
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.0079 Score=70.63 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHH
Q 039206 461 VQGEALKVAVEWK 473 (645)
Q Consensus 461 vke~A~~lA~~WK 473 (645)
-.+.|.++|....
T Consensus 626 dl~qa~~~ak~~~ 638 (1200)
T KOG0964|consen 626 DLEQALRLAKKHE 638 (1200)
T ss_pred cHHHHHHHHHhcC
Confidence 3456666666544
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0099 Score=68.18 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.0
Q ss_pred HHhHHHHHhhhcchHhhhhhHHHHH
Q 039206 34 ELKKETLRRSFDLPHEQLGLFTAQW 58 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (645)
+=||+||.+=-.+|+-+|..|..+.
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqq 340 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQ 340 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHH
Confidence 5689999999999999888777766
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.14 E-value=0.019 Score=72.55 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=5.2
Q ss_pred CCCChhhHHH
Q 039206 455 PEINSQVQGE 464 (645)
Q Consensus 455 p~i~~~vke~ 464 (645)
|.++...++.
T Consensus 777 p~~gr~are~ 786 (1486)
T PRK04863 777 PLFGRAAREK 786 (1486)
T ss_pred ccccHHHHHH
Confidence 5555555543
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.03 E-value=0.029 Score=65.50 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKR--------ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~--------ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
++..-+.++.+++.+++++.++.-..+-++++++.+-. ++..++..-..+..-+..+++-...-+.....+.
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ 402 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQ 402 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 55556677888888888888887777777777765421 3444555555555556666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhH
Q 039206 256 NELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 256 ~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n 335 (645)
++++.+..+++++.+..+.|..+++..++.|.++.+++... ..-++-...+-.+ --.++.+++.+++.+.+||.-+
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdk---nlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMVEQLTDK---NLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666443 0111111111111 1125556666666655555444
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.02 E-value=0.0035 Score=70.66 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=66.5
Q ss_pred HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
..+.|+-+++.+..+..+..++ +..++++++.+.. +..+.+..-...+......+..+++++......+..++.+
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~---~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLE---KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3456667777777777777777 8888888888877 6666666666666666677777777766666666666666
Q ss_pred HHHHHHHHHHHHHHHhHhHHH
Q 039206 115 LACKEKELGFVRKRIGVCNSE 135 (645)
Q Consensus 115 ~~~~~~el~~l~~~i~e~~~e 135 (645)
...+..+...+...|....+.
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 666666666666666555543
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.97 E-value=0.015 Score=67.26 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 199 TEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRL 253 (645)
Q Consensus 199 e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~ 253 (645)
.++++.++........+...+-.++..++..+.++..++....+....+..++..
T Consensus 425 ~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 425 IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444555555555555555555555555444444333
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.96 E-value=0.0029 Score=64.58 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHhhhhhchhhhH
Q 039206 284 QELLLKENQLKSVLACIEDCSKEDQV 309 (645)
Q Consensus 284 ~ei~e~e~el~~~~~~i~~~~~e~~~ 309 (645)
.++..+..+..++......+..++++
T Consensus 149 ~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 149 EEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34444444444555555555555565
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.90 E-value=0.16 Score=63.79 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhH
Q 039206 311 EKELISVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 311 e~el~~v~~~i~~le~~~~eLE~~n 335 (645)
...+..++.+|++++..+..++...
T Consensus 770 ~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 770 PERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3356667778888888777777655
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.90 E-value=0.0041 Score=63.56 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRK 127 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~ 127 (645)
++.++.+++.+.+.+..++.+++.++.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~ 59 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLEN 59 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 58
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.86 E-value=0.11 Score=60.34 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele 266 (645)
+++..+.++++....+.....++...+..-+--..++..++.++..++..++..+....+++..+....+...+.++
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq 240 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ 240 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444444555555555555555555555555554444444444443333
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.86 E-value=0.016 Score=68.20 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENEL 258 (645)
Q Consensus 226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~el 258 (645)
++.+..+++.|+..++.++-...+++..++.++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444
No 60
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.85 E-value=3.3e-06 Score=101.20 Aligned_cols=213 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~ 138 (645)
++..+.+++.+.. +....+.........+..++..+...+++.+..+..+.+....+..+++.++..+++.......
T Consensus 185 lE~qL~El~~kle---e~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 185 LEAQLNELQAKLE---ESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 4555555555555 5555555555555555555555556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhhchhhhh----chHHHHHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 039206 139 KEDELNLVKNSAEKWPKRLN----LKKEKQKRLESLDGEVRESEKELVL---------------MKEQKASIRAMIEACT 199 (645)
Q Consensus 139 le~eL~~le~ei~~~~~~le----~k~el~~~ieei~~eI~~~e~~ie~---------------~ekeieel~~eIE~~e 199 (645)
+...+..++.++.....+++ .+.++.+.+.....++.....+++. +.+.+.++...++...
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655554443322 2234445555555555444444432 1112334444455444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 200 EKLEAIEESYDAVKAKLESEKRELE-------LTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF 272 (645)
Q Consensus 200 ~ei~e~~e~ie~le~eIee~e~ELe-------el~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~ 272 (645)
..+..+...+.-+..++++...+++ .+..+...++..+.+.+...+.+..++..+..+...+..++-.+...+
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l 421 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 4444444444444444444444333 334444555555555555555444444444444444444433333333
Q ss_pred HH
Q 039206 273 CR 274 (645)
Q Consensus 273 ~~ 274 (645)
+.
T Consensus 422 ee 423 (859)
T PF01576_consen 422 EE 423 (859)
T ss_dssp --
T ss_pred HH
Confidence 33
No 61
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.83 E-value=0.098 Score=59.46 Aligned_cols=202 Identities=16% Similarity=0.107 Sum_probs=96.9
Q ss_pred hhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 039206 43 SFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDE------------RAKEIENKESELVLVEKKI 108 (645)
Q Consensus 43 ~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee------------~~~~~e~~~~eie~~e~~l 108 (645)
+.+..++.++...--+ .+.+||.+..+-. .....-+..+++..+- ..+.......+.+++...+
T Consensus 53 kk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk--~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~l 130 (629)
T KOG0963|consen 53 KKNTPEDKLKMVNPLLKSYQSEIDNLTKRSK--FAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEEL 130 (629)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 3455556666555555 7888888776644 1223345555555442 3344444555666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch--hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039206 109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP--KRLNLKKEKQKRLESLDGEVRESEKELVLMKE 186 (645)
Q Consensus 109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~--~~le~k~el~~~ieei~~eI~~~e~~ie~~ek 186 (645)
++++.++..++..-..++...+...+........++..-....... ...+....|..+-......++.+++.|..+..
T Consensus 131 ee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 131 EEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666666666666555555555542222222111 11111123444444444445555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 187 QKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS 249 (645)
Q Consensus 187 eieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~e 249 (645)
-+.....++..+.... .++.....++|.-.=.+|+.-+.++..++.+...++.++.....
T Consensus 211 a~~~t~~el~~~~s~~---dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 211 AIEDTQNELFDLKSKY---DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHhhhhHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4333333333322220 01122222233333334444444455555555555555544433
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.83 E-value=0.053 Score=62.70 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 211 AVKAKLESEKRELELTQTFMKDLLVKLRLYE--DNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELL 287 (645)
Q Consensus 211 ~le~eIee~e~ELeel~~~i~ele~El~~lr--~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~ 287 (645)
.+...++....++..+.+...++..++..+- ..|...-..+-.+.+.+...+.++..+-.....+++.+..++..+.
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443331 1233334444444444444444444444444444444444444333
No 63
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.80 E-value=0.18 Score=61.14 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ 164 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~ 164 (645)
...-+........++++..+++.+..++++++..+...+......+.......+++........++++.+.--..-++..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~ 573 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELS 573 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhh
Confidence 33334444444444444445555555555555555555555444444444455555444555555555442111123455
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVL 183 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~ 183 (645)
.++..+..+-+..++++..
T Consensus 574 ~~iq~~~e~~~~~~d~l~~ 592 (1317)
T KOG0612|consen 574 KQIQQELEENRDLEDKLSL 592 (1317)
T ss_pred HHHHHHhhccccHHHHHHH
Confidence 5555555554455555544
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.80 E-value=0.26 Score=62.73 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206 226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE 264 (645)
Q Consensus 226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e 264 (645)
++..+.++...+.+++.++..++.++..+...+....+.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.071 Score=61.53 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=13.8
Q ss_pred hhhhhchhhhHHHHhHHHHHhhHHHHHHHHHH
Q 039206 299 CIEDCSKEDQVKEKELISVGKSIRQFEERVRE 330 (645)
Q Consensus 299 ~i~~~~~e~~~ke~el~~v~~~i~~le~~~~e 330 (645)
.+.++.++..++-.+++....+++.+...+..
T Consensus 550 qldelskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 550 QLDELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 66
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.78 E-value=5.1e-06 Score=99.64 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 159 LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR 238 (645)
Q Consensus 159 ~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~ 238 (645)
.|+.+..++.++...+......+..+++-...+..+++++...+.........+......+...+.++......+..+..
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d 401 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERD 401 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777776666666666555555555565555555555555555544444444444444444433333333
Q ss_pred HHH
Q 039206 239 LYE 241 (645)
Q Consensus 239 ~lr 241 (645)
.+.
T Consensus 402 ~~q 404 (859)
T PF01576_consen 402 AAQ 404 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 333
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.71 E-value=0.32 Score=61.28 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=13.8
Q ss_pred HHHhhcchhhHHHhHHHHhHHHHHh
Q 039206 18 IAILSSGLVLVELRVAELKKETLRR 42 (645)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (645)
|--+++|..=++++..-+|.....-
T Consensus 183 I~kli~~vln~~~~~d~iK~mIi~i 207 (1201)
T PF12128_consen 183 IEKLINAVLNKKLDFDFIKNMIIAI 207 (1201)
T ss_pred hHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444455555666666666654443
No 68
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.051 Score=64.85 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.6
Q ss_pred hhhHhhhhc
Q 039206 412 ALLVLDAMS 420 (645)
Q Consensus 412 a~LVLd~~e 420 (645)
++||.|++.
T Consensus 580 ~rlv~Dvi~ 588 (1141)
T KOG0018|consen 580 VRLVIDVIN 588 (1141)
T ss_pred eEEEEEecC
Confidence 677777776
No 69
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.61 E-value=0.3 Score=58.15 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHH
Q 039206 231 KDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVK 310 (645)
Q Consensus 231 ~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~k 310 (645)
.++..+..+++.+...+.+.++....++..+...++.+..++.............+..++..++.++++-..+.+.+...
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555566666666555544443333333332
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206 311 EKELISVGKSIRQFEERVREFELREREFDSLRKAV 345 (645)
Q Consensus 311 e~el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~ 345 (645)
. .-..++..++.-|.+++--+.+.+..-..+
T Consensus 557 k----~t~qn~~~LEq~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 557 K----TTSQNGALLEQNNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred H----HHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1 224466777777777776665554444444
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.17 Score=55.67 Aligned_cols=7 Identities=29% Similarity=0.639 Sum_probs=3.5
Q ss_pred HHHHhcc
Q 039206 471 EWKKNME 477 (645)
Q Consensus 471 ~WK~~i~ 477 (645)
.||..+-
T Consensus 320 ~wkG~vi 326 (420)
T COG4942 320 RWKGMVI 326 (420)
T ss_pred cccceEE
Confidence 4555543
No 71
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.56 E-value=0.21 Score=58.80 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRI 129 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i 129 (645)
+..|+..+.++.. . +........+++++..++..+..+++.+..++..++.+++..+.++..++..+
T Consensus 187 L~~dl~~~~~~~~---~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 187 LAGDLTNVLRRRK---K-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHH---h-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544432 1 11234444555555555555555555555555555555555555555555544
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.55 E-value=0.082 Score=62.32 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 89 ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 89 e~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.+..++..+..+-+.++..+.++...++.-+.-|..++.++.+..+....+|+.|.+-.+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777788888887777777777777776543
No 73
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.54 E-value=0.34 Score=57.09 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 120 KELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 120 ~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+..+.++.+++.....+.+++-+|+-|.+++++.|
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344555566666666666666666666666665
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.49 E-value=0.34 Score=56.02 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=17.4
Q ss_pred hHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206 292 QLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE 332 (645)
Q Consensus 292 el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE 332 (645)
++..+...+......+......+..+......+...+..++
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344445544444544444444
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.25 Score=54.36 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206 99 SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDEL 143 (645)
Q Consensus 99 ~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL 143 (645)
.+...+++.|.+++.++..++.++.....++.+.++.|..++..|
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.45 E-value=0.37 Score=55.25 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDC--NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK 155 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~--~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~ 155 (645)
..|.+.++.+.-..++...+..+++.+..++... ..++.+..+-+..+..+-+.+.++.-.-..-|..|.+.+....-
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~et 488 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAET 488 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4555555555555666666666655554444332 22444455555555555555555555444445555444443331
Q ss_pred hhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 156 RLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV 235 (645)
Q Consensus 156 ~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~ 235 (645)
|. ....+.|..+.++..++..-+..++.--..+.+.|..++.++...+.........++.++.....++....++..
T Consensus 489 -l~--~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 489 -LE--EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred -HH--HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 01 224455666666666666655543333224455666666666666666666656666665555555544444433
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.44 E-value=0.4 Score=55.48 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=73.8
Q ss_pred hHHHHhHH---HHHhhhcchHhhhhhHHHHH-------HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 31 RVAELKKE---TLRRSFDLPHEQLGLFTAQW-------IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESE 100 (645)
Q Consensus 31 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~e 100 (645)
+...|++. .....+.++++.+..+.... ....+..+...+. +...++..+...|+++.+..+.-..+
T Consensus 61 ~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~---~~e~~i~~i~~~l~~L~~~e~~nr~~ 137 (560)
T PF06160_consen 61 KFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLD---EIEEDIKEILDELDELLESEEKNREE 137 (560)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666663 34456666666665443333 4555555555555 55566666666666665555555555
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH------------hHhHHHHhhHHHHHHHHHHhhhhchhhh
Q 039206 101 LVLVEKKIKDCNFEL-----------ACKEKELGFVRKRI------------GVCNSELQSKEDELNLVKNSAEKWPKRL 157 (645)
Q Consensus 101 ie~~e~~lee~~~e~-----------~~~~~el~~l~~~i------------~e~~~el~~le~eL~~le~ei~~~~~~l 157 (645)
+..+.....++++.+ ..++..++.+...+ .+....+..++.++..++..++..+..+
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555555555555433 33344444444433 3444555666666666666666665222
Q ss_pred h-chHHHHHHHHHhHHHH
Q 039206 158 N-LKKEKQKRLESLDGEV 174 (645)
Q Consensus 158 e-~k~el~~~ieei~~eI 174 (645)
. ++..+-.++++++.-+
T Consensus 218 ~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 218 KELQKEFPDQLEELKEGY 235 (560)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 2 2233334444444443
No 78
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.41 E-value=0.57 Score=56.51 Aligned_cols=69 Identities=6% Similarity=0.107 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039206 191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELE 259 (645)
Q Consensus 191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele 259 (645)
.+.-|..+...+.-....+...+.+....+..+....+++.+++..+.+++.+......+-..+.+...
T Consensus 1582 a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~ 1650 (1758)
T KOG0994|consen 1582 AQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAG 1650 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444333333333
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.29 Score=57.08 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=114.8
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+....-..-++..+++..-.-..++.|.+....++++........-+.+++..++.........+++.+..++.++..-+
T Consensus 640 eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 640 EEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33333334455667777777778888888888888888888888888888888888888888888888888888876211
Q ss_pred -------hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHH
Q 039206 155 -------KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAV------KAKLESEKR 221 (645)
Q Consensus 155 -------~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~l------e~eIee~e~ 221 (645)
...+.-+-..+++.....++.++...-+.+.+++......++..+....+........ ++.+-+...
T Consensus 720 ~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~ 799 (970)
T KOG0946|consen 720 SKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLK 799 (970)
T ss_pred cchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHH
Confidence 1111111133556666677777776666666665544555554444443222211111 111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039206 222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE 262 (645)
Q Consensus 222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~ 262 (645)
.+.+...+..+...++..++++.+.+-.........++...
T Consensus 800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~ 840 (970)
T KOG0946|consen 800 NLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMG 840 (970)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh
Confidence 35555566666666666666666666666655555554443
No 80
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.37 E-value=0.66 Score=56.54 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 82 MKIRLLDERAKEIENKESELVLVEKKIKDCNF 113 (645)
Q Consensus 82 ~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~ 113 (645)
.....+.+..+....++..+.+++.+++...+
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 81
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.37 E-value=0.59 Score=55.85 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039206 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~ 260 (645)
.++.-.+.-.++..+..+..+++.++..+..+.....+++...+.+..+++.+.++......-.+.
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444555555555555566666666666666666666666666665554444433
No 82
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.36 E-value=0.44 Score=56.95 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=41.9
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCCChHHHH------------HHHHhhh---cccc----chHHHhhhCCCCCcchh
Q 039206 478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELA------------SLLDIVA---NHRQ----TPKLRRSLGFADEVPVM 536 (645)
Q Consensus 478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~------------~l~~~v~---~~~~----~~~L~~~lgl~~ki~~~ 536 (645)
+||+-|+...-||..|+.|.++||=-.|||- ..++..+ ...| +|.|...|.-..+|..+
T Consensus 963 SGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysenm~Il 1040 (1072)
T KOG0979|consen 963 SGGERSVSTILYLLALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSENMKIL 1040 (1072)
T ss_pred CCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhcceEE
Confidence 7899999999999999999999998888873 2222222 1111 57777766666666554
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.35 E-value=0.04 Score=52.29 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ 164 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~ 164 (645)
.+.+....+.+.++..++.++......+.+|.++...+..++.+++.....+......+.+.+...
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-------------- 72 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-------------- 72 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------
Confidence 344445555555555555555555555555555555555555555555444444444444332221
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
+....+.++|..++.+++.....+.....+++.....-+.+...+..++.+......++.++..++..+
T Consensus 73 -------~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 73 -------SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred -------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 112234444544555555555555555555555555555555555555666666666666665555543
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.28 E-value=0.78 Score=55.44 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=69.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 206 EESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQE 285 (645)
Q Consensus 206 ~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~e 285 (645)
+..-+.+...+++........+..+.+.+..+...++.+.+.+++....+.-....-+++.++...++.+.-.....+.+
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~ 1641 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE 1641 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33334444445555555555666666666666666777777777766666666666667777777777777666666666
Q ss_pred HHHHHHhHHHHHHhhhhhchhhhHHHHhHHHH
Q 039206 286 LLLKENQLKSVLACIEDCSKEDQVKEKELISV 317 (645)
Q Consensus 286 i~e~e~el~~~~~~i~~~~~e~~~ke~el~~v 317 (645)
-...+....+++..-.+.+..++.+...++.+
T Consensus 1642 A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1642 AKQAEKTAGSAKEQALSAEQGLEILQKYYELV 1673 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666665555555555444444443
No 85
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.23 E-value=0.65 Score=53.45 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhhhhcCCchHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVD-MKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ 137 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~-~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~ 137 (645)
+...|.++|-... ....+.+ ......+.+..--+....++..++....-+......++..|..+.-.+.+-...+.
T Consensus 195 Mi~aFEeLR~qAE---n~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~ 271 (786)
T PF05483_consen 195 MIAAFEELRVQAE---NDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCN 271 (786)
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 7788999998766 5555554 44555555666666667888888888888998999999999999888888888888
Q ss_pred hHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 039206 138 SKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA-----------SIRAMIEACTEKLEAIE 206 (645)
Q Consensus 138 ~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeie-----------el~~eIE~~e~ei~e~~ 206 (645)
.++..-..-..-+-.+...- .-+..+++.++..+.+++..-..++..++ +....++++......+.
T Consensus 272 qLeE~~~~q~E~Lkes~~~q---e~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s 348 (786)
T PF05483_consen 272 QLEEKTKEQHENLKESNEEQ---EHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS 348 (786)
T ss_pred HHHHHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88766665555444444211 23667777787777776666655554433 44455666666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 207 e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
....+++..|-.++.-|..-+.++...+.++..+..+++....++....
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt 397 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMT 397 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666777777777777777788888888888888888877777755443
No 86
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.74 Score=53.81 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 54 FTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKI 108 (645)
Q Consensus 54 ~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~l 108 (645)
...+| .+++...+|...+ ++...+.++....+.+...+......+....+.+
T Consensus 284 ~~~~~k~t~~~~~~lr~~~~---s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~ 337 (698)
T KOG0978|consen 284 YERELKDTESDNLKLRKQHS---SAADSLESKSRDLESLLDKIQDLISQEAELSKKL 337 (698)
T ss_pred HHHHHhcccchHHHHHHHHH---HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455 7888888888888 8888888888888888888887777777777533
No 87
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.17 E-value=0.72 Score=52.71 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=73.7
Q ss_pred HHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCc------hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 34 ELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSS------SIDVDMKIRLLDERAKEIENKESELVLVE 105 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~------~~~v~~~~~~~ee~~~~~e~~~~eie~~e 105 (645)
+.+...++-=+-..+.+...|+..- -+..|.++-.++. ++ -.....+-..++...++.+++..++++.+
T Consensus 58 e~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~---eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~ 134 (629)
T KOG0963|consen 58 EDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLI---EAPDPVPLLASAAELLNKQQKASEENEELKEELEEVN 134 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 4455566666667777777776665 7777777777765 32 11222222233334445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh----h----HHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHH
Q 039206 106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQ----S----KEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRES 177 (645)
Q Consensus 106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~----~----le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~ 177 (645)
.++......-..++...++++..-......+. . ++.+..+.++.+-+... .++++++.+...|+.+
T Consensus 135 ~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~------~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 135 NELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQ------NLQEQLEELEKKISSL 208 (629)
T ss_pred HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 55554444333333333332222211111111 1 22333333333333221 3667777888888888
Q ss_pred HHHHHHHHHH
Q 039206 178 EKELVLMKEQ 187 (645)
Q Consensus 178 e~~ie~~eke 187 (645)
...|.....+
T Consensus 209 q~a~~~t~~e 218 (629)
T KOG0963|consen 209 QSAIEDTQNE 218 (629)
T ss_pred HHHHHhhhhH
Confidence 7777765555
No 88
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.10 E-value=0.54 Score=56.29 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=61.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~ 242 (645)
-+.+..+++...+++...++.+.+++..+...++++++++.+...++..+...+.+.-.....+...+.+.+.++..+..
T Consensus 246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776666665555566666666666666666666555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 243 NLQSLQSTVRLRENELECKEKELELKEREF 272 (645)
Q Consensus 243 e~e~l~eel~~~~~ele~~~~ele~le~E~ 272 (645)
.++.++..-...+.++...++.+...+.++
T Consensus 326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555554444444444444444443333333
No 89
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.02 E-value=0.4 Score=47.27 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE 203 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~ 203 (645)
+.+-=+.+.+.+.+.+.+..+..+.++..++--..+.+.
T Consensus 88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk 126 (205)
T KOG1003|consen 88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLK 126 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 333444455555555554444444444444443333333
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.00 E-value=1 Score=51.74 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHH
Q 039206 86 LLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQ 164 (645)
Q Consensus 86 ~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~ 164 (645)
.-++...++..+++.+..+=++-+.++.++..++++++.-- ...++.++..-|+.+..+=+..+ .|+. -.
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l-----~~DeLaEkdE~I~~lm~EGEkLSK~ql~----qs 473 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL-----LKDELAEKDEIINQLMAEGEKLSKKQLA----QS 473 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHHHHH----HH
Confidence 34555666666666666555555556666665555554411 11355555555555555444333 2222 11
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEA-------CTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL 237 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~-------~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El 237 (645)
.-|..++..++..+.-.+-..+.|-.++.+... .++--..+.+.|.-+.+++......+...+..+..++...
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 223445555544443322222233333333332 2222233333444444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 238 RLYEDNLQSLQSTV-RLRENELECKEKELELKEREFCRIQERIEESS 283 (645)
Q Consensus 238 ~~lr~e~e~l~eel-~~~~~ele~~~~ele~le~E~~~l~~~le~~~ 283 (645)
...+.-+++....+ ...+-+.++.+.+-+.+-.++..|...+....
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444422 12222233444444444455555544444433
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.96 E-value=1.3 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCCCCChhhHHH
Q 039206 578 LGLLHLLGAFRLAPAFDGNELES 600 (645)
Q Consensus 578 ~~~L~~I~~y~L~s~f~~d~L~k 600 (645)
-+-.|++++-+...+++...+-.
T Consensus 878 AsTaQLVaASrVKA~k~S~~ld~ 900 (980)
T KOG0980|consen 878 ASTAQLVAASRVKADKDSKKLDA 900 (980)
T ss_pred HHHHHHHHHHHhhccccchhhHH
Confidence 36678899988888887665543
No 92
>PRK09039 hypothetical protein; Validated
Probab=96.95 E-value=0.19 Score=54.60 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039206 140 EDELNLV 146 (645)
Q Consensus 140 e~eL~~l 146 (645)
+++|..+
T Consensus 52 ~~eL~~L 58 (343)
T PRK09039 52 DSALDRL 58 (343)
T ss_pred HHHHHHH
Confidence 3333333
No 93
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.90 E-value=0.82 Score=50.50 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206 112 NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK 155 (645)
Q Consensus 112 ~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~ 155 (645)
...-.+.-+.|..+..+|+..+.+|..+...+.+|.+.+...++
T Consensus 322 k~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 322 KQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 33444444556666666666666666666666667666666664
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.90 E-value=1.4 Score=51.53 Aligned_cols=90 Identities=22% Similarity=0.123 Sum_probs=43.1
Q ss_pred hhHHHhHHHHHhhcchhhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHH
Q 039206 10 DFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLL 87 (645)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ 87 (645)
|=|.+-.-..|-+|.++.+++ -..+|+-.+.++++.--+..++ ++.....+....+ .+...++..+.++
T Consensus 66 dkaglneSviie~sk~vstqe------triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq---~lQ~ti~~~q~d~ 136 (1265)
T KOG0976|consen 66 DKAGLNESVIIEQSKKVSTQE------TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ---KLQDTIQGAQDDK 136 (1265)
T ss_pred HHhhccchhhhhhcchhhHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 333333334444555554432 2356666666666666555555 5554444444444 4444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039206 88 DERAKEIENKESELVLVEKKI 108 (645)
Q Consensus 88 ee~~~~~e~~~~eie~~e~~l 108 (645)
.+..-+++...++++.++.+|
T Consensus 137 ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 137 KENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444433333
No 95
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.88 E-value=1.9 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=11.4
Q ss_pred CCChhhHHHHHHHHHHHHHhccc
Q 039206 456 EINSQVQGEALKVAVEWKKNMED 478 (645)
Q Consensus 456 ~i~~~vke~A~~lA~~WK~~i~~ 478 (645)
.|...++.+= .-|..|=..|+.
T Consensus 1117 ~v~~~l~~ri-~~A~~~v~~mN~ 1138 (1353)
T TIGR02680 1117 EIARHLQSLI-LAAERQVAAMNT 1138 (1353)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444332 346777777653
No 96
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.84 E-value=1.7 Score=51.54 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=4.9
Q ss_pred HHHHHHHHhhc
Q 039206 487 LGFLHLLAAYK 497 (645)
Q Consensus 487 l~fL~~la~yg 497 (645)
.-.|+-+..||
T Consensus 720 ~~~lq~~~~~~ 730 (980)
T KOG0980|consen 720 RQYLQTLNQLG 730 (980)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 97
>PRK09039 hypothetical protein; Validated
Probab=96.83 E-value=0.22 Score=54.07 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=12.7
Q ss_pred hHHHHHhhhcchHhhhhhHHHHH
Q 039206 36 KKETLRRSFDLPHEQLGLFTAQW 58 (645)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (645)
-|--|..+++..+.++..+..++
T Consensus 40 ~q~fLs~~i~~~~~eL~~L~~qI 62 (343)
T PRK09039 40 AQFFLSREISGKDSALDRLNSQI 62 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35555666666555555555544
No 98
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.82 E-value=0.54 Score=46.96 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~ 138 (645)
+.+.+.++..++. ++..+...+...--.-.+.+...+..=.++-.-|.....++..++..+-............+..
T Consensus 17 L~n~l~elq~~l~---~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 17 LQNELAELQRKLQ---ELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 4444444444433333333333333333333333344444444444444433333333333333
Q ss_pred HHHHHH
Q 039206 139 KEDELN 144 (645)
Q Consensus 139 le~eL~ 144 (645)
.+.+|.
T Consensus 94 ~~~el~ 99 (194)
T PF15619_consen 94 KDEELL 99 (194)
T ss_pred HHHHHH
Confidence 333333
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.80 E-value=1 Score=48.60 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH
Q 039206 81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140 (645)
Q Consensus 81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le 140 (645)
+.-..+++.+...+..+..+++..+.+..+.+.+++....|+...+.+-+....++...+
T Consensus 70 r~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~ 129 (499)
T COG4372 70 RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAAR 129 (499)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666666666666666666666666666666655555444444444333
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.73 E-value=2.2 Score=54.56 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=10.7
Q ss_pred hHHHHHhhhcchHhhhhhHHHHH
Q 039206 36 KKETLRRSFDLPHEQLGLFTAQW 58 (645)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (645)
|...=+++|.+|+.++..+..++
T Consensus 736 R~~~R~~ri~el~~~IaeL~~~i 758 (1353)
T TIGR02680 736 RERARLRRIAELDARLAAVDDEL 758 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555554444444
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.71 E-value=0.51 Score=44.64 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~ 246 (645)
..+++.+-+.+++.|.+++++ ++..+.........-++.++.+...+.++..+......+..++..++.+...
T Consensus 12 LK~~~~e~dsle~~v~~LEre-------Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERE-------LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444 3333333333333333333334333444444433333333444333333333
Q ss_pred HHHH
Q 039206 247 LQST 250 (645)
Q Consensus 247 l~ee 250 (645)
+.+.
T Consensus 85 L~k~ 88 (140)
T PF10473_consen 85 LDKE 88 (140)
T ss_pred HHHH
Confidence 3333
No 102
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.69 E-value=2 Score=50.30 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206 106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK 185 (645)
Q Consensus 106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~e 185 (645)
.+++.+.++++.+.+++......-..+..-..+.+..|.+++..+.+...+......+-..+..-+..|+|....=..++
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK 166 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELK 166 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHH
Confidence 33334444444444444333333233333333344444444444444442221111244455555566666666555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039206 186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKEL 265 (645)
Q Consensus 186 keieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~el 265 (645)
.++.+++.-.-.+.++..++...+.+-.--..++...+..++..+..+...++....+...+......+...+.......
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~ 246 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY 246 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777766555555544444444444455555555555555544444444444444333333333333333
Q ss_pred HHHHHHHHHH
Q 039206 266 ELKEREFCRI 275 (645)
Q Consensus 266 e~le~E~~~l 275 (645)
+.+..+.+.|
T Consensus 247 q~l~~e~e~L 256 (617)
T PF15070_consen 247 QQLASEKEEL 256 (617)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.64 E-value=0.64 Score=43.97 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+.+...|..++.++.........+..+-+..+.++..++..+..+..++..+..+++.+..+
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555544444444444444444444444
No 104
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.59 E-value=0.87 Score=44.99 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 258 LECKEKELELKEREFCRIQERIEESSQE 285 (645)
Q Consensus 258 le~~~~ele~le~E~~~l~~~le~~~~e 285 (645)
-+...+.+..++.+++.++..+.....+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3333344444444444444444333333
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.48 E-value=0.36 Score=51.97 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVK 147 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le 147 (645)
...+...++.+..+...+.+.++.+..-+.........+..++..+.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444333
No 106
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.43 E-value=1.1 Score=45.01 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
.|.....++..++.++..++-+.+.+...+..+..+++.+...++.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555554433
No 107
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=1.6 Score=45.49 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 039206 164 QKRLESL 170 (645)
Q Consensus 164 ~~~ieei 170 (645)
..|+.-|
T Consensus 133 IsRvtAi 139 (265)
T COG3883 133 ISRVTAI 139 (265)
T ss_pred HHHHHHH
Confidence 3333333
No 108
>PRK11281 hypothetical protein; Provisional
Probab=96.35 E-value=4.3 Score=50.56 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKE-------------IENKESELVLVEKKIKDCNFELACKEKELGFV 125 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~-------------~e~~~~eie~~e~~lee~~~e~~~~~~el~~l 125 (645)
.....+.++.+++ ++..+++...+.+++..+. ...++..+.+.+..+.+.+..+.....++...
T Consensus 78 ~~~~~~~L~k~l~---~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~ 154 (1113)
T PRK11281 78 QKEETEQLKQQLA---QAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSL 154 (1113)
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666 6666666666666654431 12355566666666666666666666666666
Q ss_pred HHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 126 RKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 126 ~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
+...++....+.+-..++.++...+..
T Consensus 155 qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 155 QTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 776777777777777777777777765
No 109
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.31 E-value=0.001 Score=78.90 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTF 229 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~ 229 (645)
.++..++.+......+..........+...+.+++.++..
T Consensus 485 ~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~ 524 (713)
T PF05622_consen 485 ELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKS 524 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444434444444444444433
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.27 E-value=1.7 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=11.3
Q ss_pred HHHHHHHHhHhHHHHhhHHHHHH
Q 039206 122 LGFVRKRIGVCNSELQSKEDELN 144 (645)
Q Consensus 122 l~~l~~~i~e~~~el~~le~eL~ 144 (645)
-.++.+.|.+-+.-+..+++++.
T Consensus 72 C~EL~~~I~egr~~~~~~E~et~ 94 (312)
T smart00787 72 CKELKKYISEGRDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554444444444
No 111
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.27 E-value=3.2 Score=48.03 Aligned_cols=119 Identities=15% Similarity=0.146 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206 184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEK 263 (645)
Q Consensus 184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ 263 (645)
.++++.++...+......-.....+ +++.+.+++.-.-+-.++...+..+.-+...+..+.....-++.....
T Consensus 448 ~ekev~dLe~~l~~~~~~eq~yskQ-------VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe 520 (786)
T PF05483_consen 448 REKEVHDLEIQLTTIKESEQHYSKQ-------VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE 520 (786)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3334444444444443333333333 444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH
Q 039206 264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQV 309 (645)
Q Consensus 264 ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ 309 (645)
.+..-......+...++.+...-..++.++.+++..+.....++..
T Consensus 521 di~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 521 DINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555555555555544444443
No 112
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.18 E-value=3.1 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=26.3
Q ss_pred hHHHhHHHHHhhcchhhHH------HhHHHHhHHHHHhhhcchHhhhh
Q 039206 11 FAYLVTDIAILSSGLVLVE------LRVAELKKETLRRSFDLPHEQLG 52 (645)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 52 (645)
++.+|.=++...-|..+-+ .+|-+||...|.+-+++=-++..
T Consensus 6 v~llVilv~~~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~dEi~kVK 53 (570)
T COG4477 6 VALLVILVAAYAVGYLLRKKNYQRIDKLEERKNELLNLPVNDEISKVK 53 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCchhHHHHHh
Confidence 4555655666666665543 56778888888877765444443
No 113
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=3 Score=49.16 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=27.9
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELG 123 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~ 123 (645)
+..-++........++.-+.+.++.++...-.....+.+....++.++.
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334555555555555566666666666665555566666665555555
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.09 E-value=4.5 Score=47.94 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=13.7
Q ss_pred hhhhhhhHHHHhhCCCchhhHhhhhcCC
Q 039206 395 DVIFCNVFDTIRKAADPALLVLDAMSGF 422 (645)
Q Consensus 395 ~~lr~e~~~AL~~a~dPa~LVLd~~e~~ 422 (645)
+.+-+.|...=... |-+.|||...+.
T Consensus 457 AqLYHHVC~cNgeT--PnRVmLD~yr~~ 482 (717)
T PF09730_consen 457 AQLYHHVCMCNGET--PNRVMLDYYRQG 482 (717)
T ss_pred HHHHHHHHHccCCC--CccHHHHHHHhh
Confidence 33334333333444 555788887764
No 115
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.07 E-value=1.6 Score=42.69 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=51.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 203 EAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEES 282 (645)
Q Consensus 203 ~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~ 282 (645)
..+..+...+...|+++..+|..+.......---++-.+..+..+..++..+..++......+..+..++..........
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555666666666665555555666666666666655555555555555555555555555555555
Q ss_pred HHHHHHHHHhHHHH
Q 039206 283 SQELLLKENQLKSV 296 (645)
Q Consensus 283 ~~ei~e~e~el~~~ 296 (645)
......+..+-+.+
T Consensus 125 ~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 125 RKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHhcCCC
Confidence 55555555544443
No 116
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=4.4 Score=47.64 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 039206 314 LISVGKSIRQFEERVREF 331 (645)
Q Consensus 314 l~~v~~~i~~le~~~~eL 331 (645)
+++..+.+.++...+.++
T Consensus 575 ~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.95 E-value=0.0059 Score=72.57 Aligned_cols=31 Identities=3% Similarity=-0.084 Sum_probs=17.7
Q ss_pred CCchhhhhCChhHHHHHHHHhhhhhhhhhhhhH
Q 039206 370 SAAPENLTSSGRNLQILLNQHLRRHDVIFCNVF 402 (645)
Q Consensus 370 ~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~ 402 (645)
.-.-|+-++++.+-..++. ...+..++.|.-
T Consensus 546 ~trVL~lr~NP~~~~~~~k--~~~l~~L~~En~ 576 (722)
T PF05557_consen 546 KTRVLHLRDNPTSKAEQIK--KSTLEALQAENE 576 (722)
T ss_dssp TEEEEEESS-HHHHHHHHH--HHHHHHHHHHHH
T ss_pred CceeeeeCCCcHHHHHHHH--HHHHHHHHHHHH
Confidence 3455666777777666664 345666665433
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.91 E-value=0.0021 Score=76.29 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHhHH---HHhhHHHHHHHHHH
Q 039206 75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKE---KELGFVRKRIGVCNS---ELQSKEDELNLVKN 148 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~---~el~~l~~~i~e~~~---el~~le~eL~~le~ 148 (645)
++..+++.+..++.+........+.+++.++.++.+++.+..++. .+...++.+++..+. .+..++..++...+
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444444455555555554444433333 233334444443322 33444555555555
Q ss_pred hhhhch
Q 039206 149 SAEKWP 154 (645)
Q Consensus 149 ei~~~~ 154 (645)
.+.+..
T Consensus 323 KLed~~ 328 (713)
T PF05622_consen 323 KLEDLE 328 (713)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555544
No 119
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.87 E-value=5 Score=48.01 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=12.9
Q ss_pred hHHHHHhhHHHHHHHHHHhhh
Q 039206 313 ELISVGKSIRQFEERVREFEL 333 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eLE~ 333 (645)
.|-+.++-|..+..++..|-|
T Consensus 741 KLAECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 741 KLAECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 455555666666666666654
No 120
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.86 E-value=0.036 Score=65.92 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEES---------YDAVKAKLESEKRELELTQTFMKDL 233 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~---------ie~le~eIee~e~ELeel~~~i~el 233 (645)
++..+...+..+.++++..-..-++++-++..++.++.+....... ++++...++. -..+++..+..+
T Consensus 390 l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ele~~l~~l 466 (722)
T PF05557_consen 390 LEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDE---YKAELEAQLEEL 466 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3344445555566666666667777776676666655544333211 1222111211 122222344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206 234 LVKLRLYEDNLQSLQSTVRLRENELE-------CKEKELELKEREFCRIQERIEESSQELLLKENQLKS 295 (645)
Q Consensus 234 e~El~~lr~e~e~l~eel~~~~~ele-------~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~ 295 (645)
..++...+........++..+..... ....++..+..++..+...+..+..++..++.+++.
T Consensus 467 ~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 467 EEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ---------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333222222221 123344455555555555565666666666666654
No 121
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.82 E-value=2.2 Score=42.22 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206 185 KEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE 264 (645)
Q Consensus 185 ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e 264 (645)
+.++++++.....+++..+.+..+...++.+...+..++..++..-..+..+...++.+...+... ...+...
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~-------~~~Lq~Q 138 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATE-------KATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh-------hHHHHHH
Confidence 444555555555555555555555555555555555555555555555555554444444444433 5555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 039206 265 LELKEREFCRIQERIEESSQELLLKENQLKSVLACI 300 (645)
Q Consensus 265 le~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i 300 (645)
+-.++.-+..-...+......+.++...+.+|+.-.
T Consensus 139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~t 174 (193)
T PF14662_consen 139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSIT 174 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 554544444444455555556666666665553333
No 122
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.80 E-value=0.89 Score=52.67 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.....+......++..+.........++..++-.++++++
T Consensus 164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444444444444443
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.78 E-value=3.6 Score=44.36 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.3
Q ss_pred HhhHHHHHHH
Q 039206 336 REFDSLRKAV 345 (645)
Q Consensus 336 ~e~~~~~~~~ 345 (645)
.+...++.++
T Consensus 276 ~Ev~~Lk~~~ 285 (325)
T PF08317_consen 276 SEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 124
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.76 E-value=8.1 Score=48.25 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVL 183 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~ 183 (645)
+..++.++..++.....++..
T Consensus 883 le~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 883 LEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555544443
No 125
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=4.9 Score=45.49 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+.++.+..-+...+-.++.++.++--.+++.+..+ -.-+.+++++.-.+.++..+++-+..++++.
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKqVs~L-----------R~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQVSNL-----------RQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444442222 1224456666777777777777777777664
No 126
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.72 E-value=8.4 Score=48.13 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206 174 VRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQT 228 (645)
Q Consensus 174 I~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~ 228 (645)
+...-.++..++.++.++++.+.....++.+...++..+...+....++.+.+..
T Consensus 873 ~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~ 927 (1294)
T KOG0962|consen 873 IERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKN 927 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHH
Confidence 3333334444555555555555555555555555555554444444444444333
No 127
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.54 E-value=4.8 Score=44.16 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=7.7
Q ss_pred hHHHHHhhHHHHHHHHHH
Q 039206 313 ELISVGKSIRQFEERVRE 330 (645)
Q Consensus 313 el~~v~~~i~~le~~~~e 330 (645)
++..++.++..+...+..
T Consensus 254 ~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 254 RLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444444444444443
No 128
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.51 E-value=3.1 Score=41.79 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
|..+..+++++.......+..|..+..+......-+...+.+..++...+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555555555555555555555444443
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.32 E-value=2.4 Score=39.54 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=9.4
Q ss_pred HHhhHHHHHHHHHHhhhhH
Q 039206 317 VGKSIRQFEERVREFELRE 335 (645)
Q Consensus 317 v~~~i~~le~~~~eLE~~n 335 (645)
++..+..++.++.+|..-|
T Consensus 103 le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444
No 130
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.22 E-value=9.6 Score=45.69 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.4
Q ss_pred HHHhhhhh
Q 039206 343 KAVEDSSK 350 (645)
Q Consensus 343 ~~~~~~~~ 350 (645)
.++..|.+
T Consensus 740 ~KLAECQe 747 (769)
T PF05911_consen 740 EKLAECQE 747 (769)
T ss_pred HHHHHHHH
Confidence 34444443
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.11 E-value=6.4 Score=43.19 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=10.5
Q ss_pred HHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 127 KRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 127 ~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
.++......+..+...+..+...+.
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444333
No 132
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.11 E-value=2.9 Score=50.11 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 91 AKEIENKESELVLVEKKIKDCNFELAC--------KEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 91 ~~~~e~~~~eie~~e~~lee~~~e~~~--------~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
..++..++.++...+..+..+..+-.. ...+|..+...+...+.++...+..+..++..+..
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444432111 12556666666666666666666666666666553
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.73 Score=52.55 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhh
Q 039206 59 IQELFDLTMKSLE 71 (645)
Q Consensus 59 ~e~~~~~~r~~~~ 71 (645)
+...|..+..+++
T Consensus 357 yk~kl~~vEr~~~ 369 (652)
T COG2433 357 YKPKLEKVERKLP 369 (652)
T ss_pred HHHHHHHHHHhcc
Confidence 4455555555444
No 134
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.98 E-value=6.3 Score=42.29 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206 96 NKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ 137 (645)
Q Consensus 96 ~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~ 137 (645)
++..-|.-+.++|+.++.++..+.--.+.++.+-....+...
T Consensus 6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~ 47 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYR 47 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666665555544444433
No 135
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.95 E-value=14 Score=46.17 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=8.3
Q ss_pred CChhHHHHHHHHh
Q 039206 378 SSGRNLQILLNQH 390 (645)
Q Consensus 378 md~~~L~~~i~~~ 390 (645)
-+|..|..|+...
T Consensus 889 ~~g~kf~~~~~~~ 901 (1047)
T PRK10246 889 KEGDKFRKFAQGL 901 (1047)
T ss_pred ccCchHHHHHHHH
Confidence 4566777777543
No 136
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.91 E-value=2 Score=42.28 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039206 223 LELTQTFMKDLLVKLRLYE 241 (645)
Q Consensus 223 Leel~~~i~ele~El~~lr 241 (645)
+..+...+..+.+++..++
T Consensus 132 l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 137
>PRK10869 recombination and repair protein; Provisional
Probab=94.87 E-value=4.1 Score=47.17 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=15.4
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCCChHHHH
Q 039206 478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELA 508 (645)
Q Consensus 478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~ 508 (645)
++|+.+.-++|+...++.+..++.+=.||+.
T Consensus 432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd 462 (553)
T PRK10869 432 SGGELSRIALAIQVITARKMETPALIFDEVD 462 (553)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 4555555555555555444444444444433
No 138
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.80 E-value=6.7 Score=41.76 Aligned_cols=106 Identities=13% Similarity=0.201 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
++.++.++..++.+...++.+...+..+-...+.. -+.-+.++-++|.....++..+.+++.....+......++..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777766665544333322 111233444445555555555555544444446666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 268 KEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 268 le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+..++-.++.+......+-+++...+...
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666666666666666666665544
No 139
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.72 E-value=6.3 Score=44.73 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=5.3
Q ss_pred HhhHHHHHHH
Q 039206 336 REFDSLRKAV 345 (645)
Q Consensus 336 ~e~~~~~~~~ 345 (645)
..|+.+..++
T Consensus 369 ~~Y~~l~~r~ 378 (498)
T TIGR03007 369 SNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 140
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=10 Score=42.99 Aligned_cols=27 Identities=4% Similarity=-0.199 Sum_probs=16.2
Q ss_pred hhhhhhhhHHHHhhCCCchhhHhhhhc
Q 039206 394 HDVIFCNVFDTIRKAADPALLVLDAMS 420 (645)
Q Consensus 394 ~~~lr~e~~~AL~~a~dPa~LVLd~~e 420 (645)
.+-+-+-..+++..+|+|+.-|...+.
T Consensus 611 ~~ql~~~~~~~~~~~~ln~~d~~~~~~ 637 (654)
T KOG4809|consen 611 TFQLVSIGLAAVAMDVLNTGDVVWLLN 637 (654)
T ss_pred HHHHHHHHHHhcccCCCCCCccccccc
Confidence 333445666777777777766555444
No 141
>PRK11281 hypothetical protein; Provisional
Probab=94.60 E-value=17 Score=45.50 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=11.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHH
Q 039206 75 SSSIDVDMKIRLLDERAKEIENKE 98 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee~~~~~e~~~ 98 (645)
+..+.+...-.++.+..++++.+.
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444444444444444444444433
No 142
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.54 E-value=7.8 Score=45.73 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=24.6
Q ss_pred HHhHHHHhHHHHHh--------------hhcchHhhhh-hHHHHH----HHHHHHHHHhhhh
Q 039206 29 ELRVAELKKETLRR--------------SFDLPHEQLG-LFTAQW----IQELFDLTMKSLE 71 (645)
Q Consensus 29 ~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~----~e~~~~~~r~~~~ 71 (645)
+-+|.+||+|.... .|..|..+.+ .++... ++..++-+|...+
T Consensus 435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~s 496 (762)
T PLN03229 435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFS 496 (762)
T ss_pred HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34677888877655 3444444444 233322 6777777776666
No 143
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.53 E-value=8.7 Score=41.81 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhh
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSA 150 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei 150 (645)
.+++.+..++.-..++....+.|-+....++.....+.+.++.+++..+..+-....++..+.+.-.++..++
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl 153 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444455555555555555555555554444444444444444444333
No 144
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.52 E-value=0.81 Score=45.95 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE 262 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~ 262 (645)
++++..+++..++.+...+..++..+++.++.++++.+.+++.+..+.+.+...+..+-.++..+++.++++.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 5555666666666666666666666666666666666666666666666666666555555444444444333
No 145
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.51 E-value=4.5 Score=42.00 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l 268 (645)
.++...++.+..+.....-.++++++.++..+...++-......+..+...+-+..+.+...-..+..++-.+...++-+
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 33344444444444444445555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 269 EREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 269 e~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+.++......++.+..++...+.+++..
T Consensus 101 EgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 101 EGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554443
No 146
>PF13514 AAA_27: AAA domain
Probab=94.47 E-value=19 Score=45.41 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=10.9
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHH
Q 039206 487 LGFLHLLAAYKLASAFDGNELASLL 511 (645)
Q Consensus 487 l~fL~~la~ygi~~~f~~del~~l~ 511 (645)
+||+..++..|.+--|=.|+++..|
T Consensus 1040 LA~~e~~~~~~~~lP~IlDD~fvnf 1064 (1111)
T PF13514_consen 1040 LALAELLAEQGEPLPFILDDIFVNF 1064 (1111)
T ss_pred HHHHHHHHhCCCCCcEEeeCCcccc
Confidence 3555555444443333334444333
No 147
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.42 E-value=11 Score=42.68 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 119 ~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
..++..+...+...+.++...+..+..+...+.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555555555555555444
No 148
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.25 E-value=11 Score=41.97 Aligned_cols=89 Identities=24% Similarity=0.264 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206 88 DERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV---RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ 164 (645)
Q Consensus 88 ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l---~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~ 164 (645)
++.-+.++.+..+|+.++.+|..+...+.++...+..- -...+..+.+...+-++|+.+..++.... +.+.
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~------k~V~ 399 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT------KSVK 399 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHH
Confidence 34445555555555555555555555555555554441 12233444444444455544444433322 2233
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELV 182 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie 182 (645)
.+--++++-++.+++.+.
T Consensus 400 ~~~leaq~~~~slek~~~ 417 (622)
T COG5185 400 SRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.18 E-value=8.6 Score=46.17 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=9.9
Q ss_pred HHHhHHHHHhhcchhh
Q 039206 12 AYLVTDIAILSSGLVL 27 (645)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (645)
.++-|-+.|+.|-.++
T Consensus 72 ~~v~tqieiL~Sr~v~ 87 (754)
T TIGR01005 72 TGVATQVEILSSNEIL 87 (754)
T ss_pred HHHHHHHHHHccHHHH
Confidence 3566777777775443
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.13 E-value=0.77 Score=45.73 Aligned_cols=105 Identities=12% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l 268 (645)
..++.++.++.....+...++..+..++..++..+......+..+..++..++.++..+..++....+.++.+..++..+
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 269 EREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 269 e~E~~~l~~~le~~~~ei~e~e~el 293 (645)
+.+++.+++++..+..+=..+-...
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555544
No 151
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=13 Score=41.42 Aligned_cols=145 Identities=16% Similarity=0.192 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKR--ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~--ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
+++..+....++++....-...+..+++..-. .......++.++..-+...+.++.....+-..++++.......++.
T Consensus 349 eleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 349 ELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444333333333333332211 1233444555555555555555555555544444444444333221
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHH
Q 039206 268 -----------------KEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVRE 330 (645)
Q Consensus 268 -----------------le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~e 330 (645)
.-+..-.+..++....++|-+.-..=+.++..+-++...++..+ ....-++.+++...+.+
T Consensus 429 sfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~--~k~~l~slEkl~~Dyqa 506 (521)
T KOG1937|consen 429 SFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEE--QKQYLKSLEKLHQDYQA 506 (521)
T ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHH--HHHHHhhHHHHHHHHHH
Confidence 11122233344444444554444444444444444444434321 22334444555555555
Q ss_pred hhhhHH
Q 039206 331 FELRER 336 (645)
Q Consensus 331 LE~~n~ 336 (645)
+...|.
T Consensus 507 irqen~ 512 (521)
T KOG1937|consen 507 IRQEND 512 (521)
T ss_pred HHHHHH
Confidence 554443
No 152
>PF13166 AAA_13: AAA domain
Probab=93.93 E-value=13 Score=44.27 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039206 206 EESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECK 261 (645)
Q Consensus 206 ~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~ 261 (645)
..++..+...+......+......+..+..++..++.++.....-...+-..+...
T Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333444444444444444555555555555555555444444444444444444
No 153
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.72 E-value=5.5 Score=44.89 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHH
Q 039206 34 ELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLT 66 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~ 66 (645)
.|....+...++.++.++..+..++ ++...+++
T Consensus 89 ~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 89 VYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred EECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777666666 55555544
No 154
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.70 E-value=11 Score=39.87 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM----KDLLVKLRLYEDNLQSLQSTVRLRENELECKEK 263 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i----~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ 263 (645)
-+.+..+|+.+-.+++..-..++.....-.+.+-.+..-+..+ ..+..+++.+++.-+-+.+. +...+.
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQq-------Lskaes 158 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQ-------LSKAES 158 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHH-------HHHHHH
Confidence 3455555555555555555554444333223332232222222 22333344444444444444 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhH----HhhH
Q 039206 264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRE----REFD 339 (645)
Q Consensus 264 ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n----~e~~ 339 (645)
.+++++.++-...+.++..+--++.....+....-.+++...-....+..+.+.-.+-..+++++.-+.+.| .++|
T Consensus 159 K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 159 KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666665555555555555555566666667788888888888888 6666
Q ss_pred HHHHHH
Q 039206 340 SLRKAV 345 (645)
Q Consensus 340 ~~~~~~ 345 (645)
....+.
T Consensus 239 dA~~K~ 244 (305)
T PF14915_consen 239 DAHNKA 244 (305)
T ss_pred HHHHHH
Confidence 665555
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.55 E-value=6.4 Score=36.73 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV 235 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~ 235 (645)
+..+...+......+..+...+.........+++....--..++..-..|...+.++..++..+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444444444444444444444433333333
No 156
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.46 E-value=13 Score=39.94 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 80 VDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELG 123 (645)
Q Consensus 80 v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~ 123 (645)
|..+....-++..+.......+...++....+..+.+.+..++.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444433
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=1.3 Score=50.67 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 99 SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 99 ~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
.++....+++..++..++.++.+...++..+++..+++..++.+++.+..+..
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666655554
No 158
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.38 E-value=9.2 Score=41.56 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHH
Q 039206 289 KENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326 (645)
Q Consensus 289 ~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~ 326 (645)
....+.....=+.++..+-......+..+......+-+
T Consensus 275 ~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 275 TERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred HHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence 33333333333444444444444455556555555544
No 159
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.16 E-value=23 Score=42.10 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=37.2
Q ss_pred HhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH
Q 039206 30 LRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE 98 (645)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~ 98 (645)
|+=+.-|-..+..+|.+++.+...++..+ ...+.+.+....+ +..+.....+.+.-.+..++...+
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~---~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQ---ELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777666666 5555555555555 444444444444444444433333
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.04 E-value=11 Score=37.89 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 100 ELVLVEKKIKDCNFELACKEKELGFVRK 127 (645)
Q Consensus 100 eie~~e~~lee~~~e~~~~~~el~~l~~ 127 (645)
+|.-+...|.+...++..+..+|-.++.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ 38 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRA 38 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333333333333333333333
No 161
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.03 E-value=18 Score=40.37 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 235 VKLRLYEDNLQSLQSTVRLRENEL 258 (645)
Q Consensus 235 ~El~~lr~e~e~l~eel~~~~~el 258 (645)
.++..++.+.+-.+.-|+.+-..+
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443333
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.03 E-value=7.1 Score=46.59 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 273 CRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 273 ~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
..+.+-+.....+|.++..+++.+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555544444
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.99 E-value=3.2 Score=43.03 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 193 AMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF 272 (645)
Q Consensus 193 ~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~ 272 (645)
..|.+++..+..+..+.....-.|++.+..|..-..+..+-..+++-++.+...+.+..+.+.+....+.-++...+..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 35566666666666666666666677777776666667777777777777777777776666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhh
Q 039206 273 CRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQ 308 (645)
Q Consensus 273 ~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~ 308 (645)
.-++..+......++.++.+++-++.+++.......
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777776666666666666666666555554444433
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.87 E-value=2.5 Score=45.40 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 039206 441 RTCILLLEQL 450 (645)
Q Consensus 441 ~~cillLE~L 450 (645)
.+++.+|.|+
T Consensus 240 ~am~~~L~~~ 249 (314)
T PF04111_consen 240 KAMVAFLDCL 249 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.78 E-value=5.6 Score=40.82 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
.++.....+.++.++...|..++....++++.+..++..++..+.....+.+.....+.++-.++.-+..++.+.
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667777777777777777777777777777777777666666666666666665655555555544
No 166
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.78 E-value=2.5 Score=45.39 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=11.3
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhH
Q 039206 313 ELISVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eLE~~n 335 (645)
+.+.+..++......+..|...|
T Consensus 114 e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445555555555566655544
No 167
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.77 E-value=4.7 Score=37.18 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=5.5
Q ss_pred HhHHHHHHHHHHHH
Q 039206 169 SLDGEVRESEKELV 182 (645)
Q Consensus 169 ei~~eI~~~e~~ie 182 (645)
.++.++..++.+..
T Consensus 72 ~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 72 ELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 168
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.54 E-value=6.6 Score=46.89 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 87 LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 87 ~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
-+++..+...+....+.--.+|.++..++..++...+.+.+++++....=+.+.++++.+-....
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666677777777666666666776666666666666666555443
No 169
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.52 E-value=4.1 Score=44.57 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+-..++.+-.+......++...+++.....+.+.++..++..+..+|+.+..++++.|
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555555555666666666666666666667777777777777777776666
No 170
>PRK12704 phosphodiesterase; Provisional
Probab=92.49 E-value=24 Score=40.59 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=9.0
Q ss_pred chHHHhhhCCCCCcchhh
Q 039206 520 TPKLRRSLGFADEVPVMH 537 (645)
Q Consensus 520 ~~~L~~~lgl~~ki~~~v 537 (645)
+..+++..|+.+.+.++|
T Consensus 386 Ga~il~~~~~~~~v~~aI 403 (520)
T PRK12704 386 GAELAKKYKESPVVINAI 403 (520)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 455666655544333333
No 171
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=24 Score=40.19 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=63.5
Q ss_pred hHHHhHHHHHhhc---------------chhhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHH---HHHHhhh
Q 039206 11 FAYLVTDIAILSS---------------GLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELF---DLTMKSL 70 (645)
Q Consensus 11 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~---~~~r~~~ 70 (645)
.-.|-+||++||- |+.+-+= |..+..++++++....+++-++ ....| .+...+
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLee------K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk- 82 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEE------KEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK- 82 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4466788888874 3333221 3345556667777766666666 22222 222222
Q ss_pred hhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 71 EKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGV 131 (645)
Q Consensus 71 ~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e 131 (645)
.....+.+-+..|++-....+..-..|-+++++|..++.++..++++.+.+.+.-..
T Consensus 83 ----~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd 139 (772)
T KOG0999|consen 83 ----VARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSD 139 (772)
T ss_pred ----hhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445556677777666666666666777777777777777777666666555433
No 172
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.34 E-value=15 Score=37.89 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQKA------------SIRAMIEACTEKLEAI-----EESYDAVKAKLESEKREL 223 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~ekeie------------el~~eIE~~e~ei~e~-----~e~ie~le~eIee~e~EL 223 (645)
|-|+-....++++++...++|+.+..+|. .+...--.+..+..++ ..+|..++.++.-.++.-
T Consensus 173 PAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~s 252 (330)
T KOG2991|consen 173 PAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQS 252 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhH
Confidence 55666666666666666666665555443 1111112222222222 234555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206 224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266 (645)
Q Consensus 224 eel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele 266 (645)
+++.....++..-+.++.+.++.....+--++.++...+++++
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666664444444444444333
No 173
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.21 E-value=29 Score=40.78 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206 231 KDLLVKLRLYEDNLQSLQSTVRLRENEL--------ECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIED 302 (645)
Q Consensus 231 ~ele~El~~lr~e~e~l~eel~~~~~el--------e~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~ 302 (645)
.++..++..++++++.+-.++...-.-+ +.-..++..+......+...+......+.....++...+..+.+
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4677888888888888877765333222 33344455666666666666666667777777777777666666
Q ss_pred hchhhhHHHHhHHHHHhhHH-HHHHHHHHhhhhH-HhhHHHHHHHh
Q 039206 303 CSKEDQVKEKELISVGKSIR-QFEERVREFELRE-REFDSLRKAVE 346 (645)
Q Consensus 303 ~~~e~~~ke~el~~v~~~i~-~le~~~~eLE~~n-~e~~~~~~~~~ 346 (645)
+..+.-....++..-..... .+...+.++|+.- +.+-.++.+++
T Consensus 554 s~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLN 599 (739)
T PF07111_consen 554 STEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLN 599 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554444444444333222 5666777777776 66666777664
No 174
>PF13166 AAA_13: AAA domain
Probab=92.00 E-value=32 Score=40.86 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 039206 59 IQELFDL 65 (645)
Q Consensus 59 ~e~~~~~ 65 (645)
++.+|+.
T Consensus 274 l~~~f~~ 280 (712)
T PF13166_consen 274 LEKYFDE 280 (712)
T ss_pred HHHHHHH
Confidence 4444444
No 175
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.86 E-value=20 Score=42.04 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHH
Q 039206 89 ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLE 168 (645)
Q Consensus 89 e~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ie 168 (645)
++++.++.+.+.+-..+.....+.+.++-.+.++..--. .+..-.--+++..++.++.+--++++...+.-..+...++
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q 173 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE 173 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433211 1111111112223333333333333321111123555666
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 039206 169 SLDGEVRESEKELVLMKE 186 (645)
Q Consensus 169 ei~~eI~~~e~~ie~~ek 186 (645)
+...++.++..+.+.-+.
T Consensus 174 e~naeL~rarqreemnee 191 (916)
T KOG0249|consen 174 ELNAELQRARQREKMNEE 191 (916)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 677777777766665333
No 176
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.79 E-value=14 Score=36.16 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~ 246 (645)
.+.++-+...+..+|+....++..++..+......+.-.++....+..+....+.++......+..+..++...+.+++.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566655555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 039206 247 LQST 250 (645)
Q Consensus 247 l~ee 250 (645)
+...
T Consensus 124 ~~~~ 127 (177)
T PF13870_consen 124 LRKQ 127 (177)
T ss_pred HHHH
Confidence 5544
No 177
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.75 E-value=21 Score=38.28 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=10.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~~eke 187 (645)
.+-..+++.+..+-...+..+.+
T Consensus 135 ~eN~~L~eKlK~l~eQye~rE~~ 157 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYELREEH 157 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555443333
No 178
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.68 E-value=26 Score=39.10 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHhhhhHHhhHHHHHHH
Q 039206 328 VREFELREREFDSLRKAV 345 (645)
Q Consensus 328 ~~eLE~~n~e~~~~~~~~ 345 (645)
.++++....-|+.+-.++
T Consensus 348 ~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 348 QRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556666666666
No 179
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.45 E-value=20 Score=37.36 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 224 eel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
..+...+.++..++..+++-+.+..........-...-...+..+...+..+.+.-
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444433333333333333333333333333333
No 180
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.38 E-value=9.9 Score=35.09 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 039206 169 SLDGEVRESEKELVLMKEQKA 189 (645)
Q Consensus 169 ei~~eI~~~e~~ie~~ekeie 189 (645)
.+.+.|+++++.+..+..++.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333
No 181
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.35 E-value=29 Score=39.09 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 039206 79 DVDMKIRLLDERAKEIENKESE 100 (645)
Q Consensus 79 ~v~~~~~~~ee~~~~~e~~~~e 100 (645)
++...+.++..+..++.++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 182
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.32 E-value=48 Score=41.56 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.9
Q ss_pred hCCCCCcchhh
Q 039206 527 LGFADEVPVMH 537 (645)
Q Consensus 527 lgl~~ki~~~v 537 (645)
.|++.+++++.
T Consensus 1010 v~iisH~~~l~ 1020 (1047)
T PRK10246 1010 IGVISHVEAMK 1020 (1047)
T ss_pred EEEEecHHHHH
Confidence 34444444443
No 183
>PRK12704 phosphodiesterase; Provisional
Probab=91.23 E-value=32 Score=39.67 Aligned_cols=6 Identities=17% Similarity=0.208 Sum_probs=2.2
Q ss_pred hHhhhh
Q 039206 47 PHEQLG 52 (645)
Q Consensus 47 ~~~~~~ 52 (645)
.+.++.
T Consensus 36 Ae~eAe 41 (520)
T PRK12704 36 AEEEAK 41 (520)
T ss_pred HHHHHH
Confidence 333333
No 184
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.00 E-value=36 Score=39.47 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=6.7
Q ss_pred HHHHHcCCCCccc
Q 039206 613 KLCRSLGFADKVP 625 (645)
Q Consensus 613 ~l~~~lgl~~k~p 625 (645)
+..|++.|++-.|
T Consensus 721 eWLrsiDLAEytp 733 (861)
T KOG1899|consen 721 EWLRSIDLAEYTP 733 (861)
T ss_pred HHHHhccHHHhCc
Confidence 4445555554444
No 185
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.00 E-value=11 Score=41.15 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 229 FMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 229 ~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el 293 (645)
+.+-+...|..+-.+....+.++...+.........+.+...++..+.+.++....+++++.+.+
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333334443333333333333333333444444444444444444444444444444444443
No 186
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.90 E-value=1.6 Score=43.92 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 79 DVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 79 ~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
........+++..++-+.+-.++++++.++++.++.+..++.+...+...+..+-.+...+++...+++...+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 3333444566666666666667777777777777777777777777777777777777777777776665543
No 187
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.69 E-value=20 Score=36.17 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 039206 195 IEACTEKLEAIEESYDAV 212 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~l 212 (645)
++++..++.....++..+
T Consensus 120 ~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 120 IEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333433333
No 188
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=90.61 E-value=11 Score=39.47 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=56.2
Q ss_pred HHHhHHHHHhhhcchHhhhh-hHHHHHHHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 33 AELKKETLRRSFDLPHEQLG-LFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDC 111 (645)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~ 111 (645)
..|++..+..-++.+.+=-+ -+...|+.+.++.+..-+. ..+.- +.+..+.+.....++..+.+++..
T Consensus 144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e----~~~~~-------~~~e~eke~~~r~l~~~~~ELe~~ 212 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKE----IYDQH-------ETREEEKEEKDRKLELKKEELEEL 212 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777776554 6778887777777665433 01111 222333333444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 112 NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 112 ~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
..++...+.++..++..|.++.+.+..++.+-..+.+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444444444333
No 189
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.39 E-value=25 Score=36.63 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQSTV 251 (645)
Q Consensus 233 le~El~~lr~e~e~l~eel 251 (645)
+...|..+...+..+..-+
T Consensus 183 i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.39 E-value=34 Score=40.26 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~ 138 (645)
++.....++.... .......+++..+.+..+.-+..+-.|...+..+-....+-.+...--++++..+......+--
T Consensus 33 ~e~~~~~ar~~~~---~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq 109 (916)
T KOG0249|consen 33 LEHSLPEARKDLI---KAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ 109 (916)
T ss_pred HHhhhhhhHHHHH---HHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch
Confidence 4455555555555 4445556666666666666666666666666666555554444444444444444444444333
Q ss_pred HHHHH
Q 039206 139 KEDEL 143 (645)
Q Consensus 139 le~eL 143 (645)
.++..
T Consensus 110 ~eekn 114 (916)
T KOG0249|consen 110 NEEKN 114 (916)
T ss_pred hHHhh
Confidence 33333
No 191
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.31 E-value=59 Score=40.86 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHhhhh
Q 039206 137 QSKEDELNLVKNSAEK 152 (645)
Q Consensus 137 ~~le~eL~~le~ei~~ 152 (645)
.+....+.+++..+..
T Consensus 147 ~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 147 TEARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5555556666555443
No 192
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.07 E-value=23 Score=35.66 Aligned_cols=72 Identities=25% Similarity=0.351 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHh
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS 149 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~e 149 (645)
-+|+.+..+|-+...++..+..+|-.+...+.+........+..+..+........-++..-+.+|.....+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 456666677777777766666666666666666666666666666666665555555555555555444433
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.81 E-value=15 Score=33.14 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+..++..|+..+....++..+.+.+...+..++.+..+...++.++..++.++...++..+..
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666777777777777777888888888888888777776666
No 194
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.76 E-value=32 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.2
Q ss_pred cchhhHhHHHHHHHHHhh
Q 039206 433 EFDVSIIRRTCILLLEQL 450 (645)
Q Consensus 433 ~~~~~~~r~~cillLE~L 450 (645)
+...++.+.-|.-|||.+
T Consensus 271 ~~s~sdLksl~~aLle~i 288 (319)
T PF09789_consen 271 PQSISDLKSLATALLETI 288 (319)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 345677888999999988
No 195
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=89.65 E-value=19 Score=34.23 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 218 SEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIE 280 (645)
Q Consensus 218 e~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le 280 (645)
=.+.+++.++.+|..++.+|.-+.........+|..+.....++.++...+-..+..|....+
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888888888888888888888666666666666665555555555544443
No 196
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.45 E-value=16 Score=32.96 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 233 le~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+...++.+...++..+.....+.++.+.++..+..++.+......++..+..+|.++...+.+.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333444666666666666666666666665555665555555443
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.44 E-value=26 Score=39.07 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCR 274 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~ 274 (645)
+++..........+..+++.+....+++-...+.+..++..+++...+++...++.-..+.++.....+.+..++....
T Consensus 349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~- 427 (493)
T KOG0804|consen 349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK- 427 (493)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Confidence 3333333333333333444444444444444455555555555555555555554544444445555554444443333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 039206 275 IQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 275 l~~~le~~~~ei~e~e~el~~~ 296 (645)
........+|.++++|+.++
T Consensus 428 --~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 428 --EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred --HHHHHHHHHHHHHHHHHHhH
Confidence 23333344555555555444
No 198
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.90 E-value=28 Score=36.12 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~ 242 (645)
+.+|..-+.....+..+...++.
T Consensus 25 ~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 25 QEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 199
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.84 E-value=50 Score=38.00 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 039206 559 VAGEWKEK 566 (645)
Q Consensus 559 ~a~~wk~~ 566 (645)
+|.+.+.+
T Consensus 481 la~~i~~~ 488 (514)
T TIGR03319 481 LARDIAKK 488 (514)
T ss_pred HHHHHHHH
Confidence 33333333
No 200
>PF14992 TMCO5: TMCO5 family
Probab=88.74 E-value=35 Score=36.01 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHhhhC
Q 039206 487 LGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLG 528 (645)
Q Consensus 487 l~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~~lg 528 (645)
.++|-.+..| +.+++.|-+..++..+-.|+..-.|..-|+
T Consensus 229 ~~LL~y~~f~--~~fInpdll~~~LP~~L~R~tlw~LR~~l~ 268 (280)
T PF14992_consen 229 TRLLGYLLFY--IQFINPDLLEDVLPKMLSRRTLWRLREFLF 268 (280)
T ss_pred HHHHHHHHHH--HhhcCcHHHHHHhHHhcchhHHHHHHHHHh
Confidence 3444444555 677888999999998888888777766543
No 201
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.64 E-value=31 Score=35.37 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206 121 ELGFVRKRIGVCNSELQSKEDELNLV 146 (645)
Q Consensus 121 el~~l~~~i~e~~~el~~le~eL~~l 146 (645)
....++..|+.--.++..+.++|..+
T Consensus 39 ~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 39 RAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 33333333333344444444444433
No 202
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.56 E-value=29 Score=34.94 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=49.4
Q ss_pred HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-
Q 039206 37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLV----EKKIK- 109 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~----e~~le- 109 (645)
+-+++.-++.+++=...+...+ ++..+..++..+. ..-..-.+.++++++....+.......... +.++.
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a---~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr 87 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALA---RVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR 87 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444332333333 5555555555555 444455555555555555555554433322 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 110 DCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 110 e~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
..-......+..+..+...++.....+..++..|..++..|.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233334444444444444444444444444444444433
No 203
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=87.99 E-value=34 Score=35.06 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKE------------IENKESELVLVEKKIKDCNFELACKEKELGFVR 126 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~------------~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~ 126 (645)
...........+. ++-.++......|+..... .+.++..|......+......+......+..+.
T Consensus 36 ~~~~~~~~~~~i~---~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~ 112 (240)
T PF12795_consen 36 QKKRAAEYQKQID---QAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQ 112 (240)
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 4444555555555444332 445555666666666666666666666666666
Q ss_pred HHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 127 KRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 127 ~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
...+.....+.+....+.++...+..
T Consensus 113 ~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 113 TRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666666666654
No 204
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.79 E-value=50 Score=36.68 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHHH
Q 039206 78 IDVDMKIRLLDER 90 (645)
Q Consensus 78 ~~v~~~~~~~ee~ 90 (645)
..|+-+++...++
T Consensus 222 ~kv~flerkv~el 234 (502)
T KOG0982|consen 222 RKVRFLERKVQEL 234 (502)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 205
>PRK10869 recombination and repair protein; Provisional
Probab=87.52 E-value=63 Score=37.56 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=8.0
Q ss_pred CchhhHhhhhcC
Q 039206 410 DPALLVLDAMSG 421 (645)
Q Consensus 410 dPa~LVLd~~e~ 421 (645)
+|.-+|+|-+..
T Consensus 452 ~~~~li~DEpd~ 463 (553)
T PRK10869 452 ETPALIFDEVDV 463 (553)
T ss_pred CCCEEEEECCCC
Confidence 567777776554
No 206
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.38 E-value=69 Score=37.87 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCccchhHHHHHHhccccchh
Q 039206 612 PKLCRSLGFADKVPGKLSVIEIQMYWLQLV 641 (645)
Q Consensus 612 ~~l~~~lgl~~k~p~~i~~l~~~~~~~~av 641 (645)
+..-+.++.+.+-|+....+....-.+..|
T Consensus 620 ~~~~r~~~~~~~~~~~s~k~~~~~~~~~~s 649 (660)
T KOG4302|consen 620 SEKKRLLSKSSSSPDTSGKLNSPPNEPEFS 649 (660)
T ss_pred hhhhcccchhccCCchhhhhcCCCCCcccc
Confidence 456677888899999888888877666554
No 207
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.92 E-value=43 Score=37.97 Aligned_cols=8 Identities=25% Similarity=-0.110 Sum_probs=4.0
Q ss_pred cCCCCCCC
Q 039206 420 SGFYPPHS 427 (645)
Q Consensus 420 e~~~~~~~ 427 (645)
+.+|++++
T Consensus 430 ~~~~~p~S 437 (596)
T KOG4360|consen 430 GMPGQPGS 437 (596)
T ss_pred CCCCCCCC
Confidence 44555554
No 208
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.52 E-value=1e+02 Score=38.91 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=8.0
Q ss_pred hHhHHHHhhHHHHHHH
Q 039206 130 GVCNSELQSKEDELNL 145 (645)
Q Consensus 130 ~e~~~el~~le~eL~~ 145 (645)
.+....+.+++..+..
T Consensus 147 ~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 147 TEARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4445555555554444
No 209
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.23 E-value=70 Score=36.78 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=6.1
Q ss_pred hHHHHhhCCCc
Q 039206 401 VFDTIRKAADP 411 (645)
Q Consensus 401 ~~~AL~~a~dP 411 (645)
+|.++...|.+
T Consensus 456 ~~~~~~~~~~d 466 (511)
T PF09787_consen 456 VPLLMKDSPHD 466 (511)
T ss_pred hhhhccCCCcc
Confidence 66666655433
No 210
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=86.13 E-value=59 Score=35.89 Aligned_cols=19 Identities=21% Similarity=0.628 Sum_probs=10.5
Q ss_pred hHHHHHhhHHHHHHHHHHh
Q 039206 313 ELISVGKSIRQFEERVREF 331 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eL 331 (645)
.+..|+.+++.++.+|.+|
T Consensus 369 N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 369 NMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455555556665555544
No 211
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.13 E-value=97 Score=38.35 Aligned_cols=115 Identities=24% Similarity=0.221 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA--CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK 155 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~--~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~ 155 (645)
.+-=+|...+-++-.+|++++.++...+....=+-.+=. ..+.+.......|++...++..+++.|..+.......
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~-- 474 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ-- 474 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 344466677777777777777777666555443332222 2344555555566666666666666666655544322
Q ss_pred hhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 156 RLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMI 195 (645)
Q Consensus 156 ~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eI 195 (645)
++.+..++++.+.++..+......++..++++..++..+
T Consensus 475 -~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 475 -LEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344555555555555555555554444444444443
No 212
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.85 E-value=54 Score=35.12 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLES-EKRELELTQTFMKDLLVKLRL 239 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee-~e~ELeel~~~i~ele~El~~ 239 (645)
+-|-++|..++.+-+.+-..++.-+.- ....+..++..+..++..++..++. .+..+..+...+..+..+...
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~------ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEF------LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA 153 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655555554444333211111 1122233333333333344433333 223344455555554444444
Q ss_pred HHHHHHHHHHH
Q 039206 240 YEDNLQSLQST 250 (645)
Q Consensus 240 lr~e~e~l~ee 250 (645)
++..++.+..+
T Consensus 154 ~q~~le~Lr~E 164 (310)
T PF09755_consen 154 KQEELERLRRE 164 (310)
T ss_pred hHHHHHHHHHH
Confidence 44444444333
No 213
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.54 E-value=13 Score=34.53 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=39.0
Q ss_pred HhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 48 HEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125 (645)
Q Consensus 48 ~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l 125 (645)
.+-.+++..++ +-+.+.++++.++ .+|......+++...-...+..++..+..+++.+..++..+..-...|
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLs------qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLS------QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444555566 6666666666555 555555555555555544444444444444444444444444444444
Q ss_pred HHHHh
Q 039206 126 RKRIG 130 (645)
Q Consensus 126 ~~~i~ 130 (645)
+.+|.
T Consensus 116 e~ki~ 120 (126)
T PF07889_consen 116 EGKID 120 (126)
T ss_pred HHHHH
Confidence 44443
No 214
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=85.31 E-value=41 Score=35.93 Aligned_cols=51 Identities=10% Similarity=0.261 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 141 DELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE 196 (645)
Q Consensus 141 ~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE 196 (645)
+.|+++..++..++- +++...|...+..|....+.|+.++++|++++..|.
T Consensus 55 ~~ld~~~~kl~~Ms~-----~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 55 DSLDELKEKLKEMSS-----TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HhhHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666663 334444444444444444444444444444444443
No 215
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.21 E-value=81 Score=36.59 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=26.7
Q ss_pred hccccCCchHHHHHHHHHHHhhcCCCCCChHHHHH
Q 039206 475 NMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELAS 509 (645)
Q Consensus 475 ~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~ 509 (645)
++.+||+-|=-.||+=-.++.++-.|..=+|||+.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~ 464 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDT 464 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccC
Confidence 34578888888888888888887666666677764
No 216
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=84.64 E-value=40 Score=32.66 Aligned_cols=9 Identities=44% Similarity=0.460 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039206 173 EVRESEKEL 181 (645)
Q Consensus 173 eI~~~e~~i 181 (645)
+..++.+.+
T Consensus 28 E~~~l~~EL 36 (159)
T PF05384_consen 28 EYERLRKEL 36 (159)
T ss_pred HHHHHHHHH
Confidence 333333333
No 217
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.50 E-value=23 Score=29.71 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 196 EACTEKLEAIEESYDAVKAKLESEKRE 222 (645)
Q Consensus 196 E~~e~ei~e~~e~ie~le~eIee~e~E 222 (645)
+.++.+|...-..|..++.++++.+.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333
No 218
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.40 E-value=18 Score=38.60 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhc
Q 039206 462 QGEALKVAVEWKKNM 476 (645)
Q Consensus 462 ke~A~~lA~~WK~~i 476 (645)
...|.+.-.+.|=++
T Consensus 278 qrdanrqisd~KfKl 292 (302)
T PF09738_consen 278 QRDANRQISDYKFKL 292 (302)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444433
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.26 E-value=47 Score=37.12 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIR-LLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ 137 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~-~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~ 137 (645)
+.+++++-|+-.+ ..+..++. +++......+.+-.+...++.+...++......+..+..++..+.++.+++.
T Consensus 326 l~sqleSqr~y~e------~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 326 LTSQLESQRKYYE------QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred hhhhhhHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 33333333 5555555555555555555555555555555566666666555555555554
Q ss_pred hHH
Q 039206 138 SKE 140 (645)
Q Consensus 138 ~le 140 (645)
..+
T Consensus 400 ~~~ 402 (493)
T KOG0804|consen 400 EER 402 (493)
T ss_pred HHH
Confidence 444
No 220
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.74 E-value=64 Score=34.27 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039206 109 KDCNFELACKEKELGFVRKR 128 (645)
Q Consensus 109 ee~~~e~~~~~~el~~l~~~ 128 (645)
+.++.+++++...++..-.+
T Consensus 87 erLEtEiES~rsRLaaAi~d 106 (305)
T PF14915_consen 87 ERLETEIESYRSRLAAAIQD 106 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444443333
No 221
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=83.56 E-value=83 Score=35.40 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 202 LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 202 i~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+..+.+-.+..++.+.+.+.+-+.++-.++.+...+..|+++...-.++
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555555555555555544443333
No 222
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=83.40 E-value=1.5 Score=46.87 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206 258 LECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE 332 (645)
Q Consensus 258 le~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE 332 (645)
+..+...+..++..++.+...+..++.-+......|..++..+.....++.....++....-+|..++.++.+||
T Consensus 79 L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 79 LNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 333333333333333333333333333333333333333333333333333334444445555556666666655
No 223
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.64 E-value=40 Score=33.52 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACK 118 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~ 118 (645)
.....+...++.+..+++.+..++..++..|+.....+..-
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45555556666666666666666666665555554444433
No 224
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.47 E-value=43 Score=35.17 Aligned_cols=64 Identities=20% Similarity=0.072 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206 82 MKIRLLDERAKEIENKESELVLVEKKIKDCNF-------ELACKEKELGFVRKRIGVCNSELQSKEDELNL 145 (645)
Q Consensus 82 ~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~-------e~~~~~~el~~l~~~i~e~~~el~~le~eL~~ 145 (645)
....+--.+...|+.+..+++..++.|..+.. +.+.++.+|..+=...-.+-.-+..++..|+.
T Consensus 187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333344444444444444444444443 44444444444433333444444444444443
No 225
>PF14992 TMCO5: TMCO5 family
Probab=82.03 E-value=73 Score=33.67 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 039206 444 ILLLEQL 450 (645)
Q Consensus 444 illLE~L 450 (645)
++-|.++
T Consensus 260 lw~LR~~ 266 (280)
T PF14992_consen 260 LWRLREF 266 (280)
T ss_pred HHHHHHH
Confidence 3334433
No 226
>PRK00106 hypothetical protein; Provisional
Probab=81.78 E-value=1.1e+02 Score=35.50 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhc
Q 039206 485 VVLGFLHLLAAYK 497 (645)
Q Consensus 485 ~al~fL~~la~yg 497 (645)
-.+|=|.+-.+||
T Consensus 336 ~~lg~l~~r~sy~ 348 (535)
T PRK00106 336 KIMGRLQFRTSYG 348 (535)
T ss_pred HHHHHHhhhccCC
Confidence 3344444444443
No 227
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.73 E-value=48 Score=32.41 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=16.3
Q ss_pred hhcchhhHHHhHHHHhHHHHHhhhcchHhh
Q 039206 21 LSSGLVLVELRVAELKKETLRRSFDLPHEQ 50 (645)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (645)
+||-++.-.|+---|.+.-+-..++.|.++
T Consensus 23 ~ssq~v~~~lq~e~lgktavqk~Ld~La~~ 52 (201)
T KOG4603|consen 23 YSSQDVFGNLQREHLGKTAVQKTLDQLAQQ 52 (201)
T ss_pred CchHHHHHHHHHHhccchHHHHHHHHHHHc
Confidence 455555555555555555555555555443
No 228
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.50 E-value=71 Score=33.19 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGF-------------VRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~-------------l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
.+.++..++...+--.+..++.+..++...+..+.....= +.-.+.++.+++....+.|++...+|.
T Consensus 122 qQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 122 QQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666677778888888888888888888776532 334457888888888888888888888
Q ss_pred hch
Q 039206 152 KWP 154 (645)
Q Consensus 152 ~~~ 154 (645)
-+.
T Consensus 202 Awk 204 (330)
T KOG2991|consen 202 AWK 204 (330)
T ss_pred eee
Confidence 776
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.47 E-value=25 Score=33.98 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=14.1
Q ss_pred hHHHhHHHHhHHHHHhhhcchHhh
Q 039206 27 LVELRVAELKKETLRRSFDLPHEQ 50 (645)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~ 50 (645)
...|.. ++.|...-+-++.|.++
T Consensus 23 ~~nL~~-~~~K~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 23 FDNLHN-KVGKTAVQKALDSLVEE 45 (169)
T ss_pred HHHHHh-hccHHHHHHHHHHHHhC
Confidence 344444 56667777777666665
No 230
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=81.31 E-value=16 Score=39.39 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHH
Q 039206 97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRE 176 (645)
Q Consensus 97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~ 176 (645)
+..|.++++++..++++.-......++++.+.-+.+.+.+..-.+++..+...+...+.... ++-...+++++.+|.+
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~--~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLS--AEERELIEKLEEDIKE 79 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHH
Confidence 34566777777777777788888888888888888888888888888888887777653222 3444555555555555
Q ss_pred HHHHHH
Q 039206 177 SEKELV 182 (645)
Q Consensus 177 ~e~~ie 182 (645)
....+.
T Consensus 80 r~~~l~ 85 (330)
T PF07851_consen 80 RRCQLF 85 (330)
T ss_pred HHhhHH
Confidence 444443
No 231
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.80 E-value=28 Score=28.90 Aligned_cols=34 Identities=6% Similarity=-0.035 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 217 ee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
.+++..+..+..++...+.....+..+++.....
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~ 41 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ 41 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 232
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.74 E-value=1.4e+02 Score=35.39 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHH
Q 039206 121 ELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESE 178 (645)
Q Consensus 121 el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e 178 (645)
+++.+...+..+=.++.+++..+.....+...++.-..+=|-++.+.+-++.++.+++
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~ 295 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE 295 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445544444444444333211222334444444444444433
No 233
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.67 E-value=1.1e+02 Score=34.16 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL 234 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele 234 (645)
++..++++.++..+..+.++.+.-++-..+..-......+....+++.+...-|++...+++.++.....+.
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566666666666666666666655455555555556666666666666667777777777666655544
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.58 E-value=86 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 235 VKLRLYEDNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 235 ~El~~lr~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
.|+..++.++..+-+.|-..-..++=++.+++.
T Consensus 225 dEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555555555544444444444444433
No 235
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.46 E-value=5.8 Score=43.62 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 039206 228 TFMKDLLVKLRLYED 242 (645)
Q Consensus 228 ~~i~ele~El~~lr~ 242 (645)
.++..+...+..+.+
T Consensus 172 k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 172 KRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333444444433
No 236
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.45 E-value=73 Score=32.06 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206 231 KDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276 (645)
Q Consensus 231 ~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~ 276 (645)
..++..+..++..++.....+..+...+..++..+..+..+...+.
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.44 E-value=85 Score=32.84 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE----SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNS 134 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~----~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~ 134 (645)
+-..|-++-+. ....|+..-.+-+-..+-+..++ ..+.++..+|.++++..+ ..+..++..++..+.
T Consensus 25 L~~~IqdtE~s------t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e---~~l~~Lq~ql~~l~a 95 (258)
T PF15397_consen 25 LIKEIQDTEDS------TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEE---SKLSKLQQQLEQLDA 95 (258)
T ss_pred HHHHHHhHHhh------HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 44445444442 23555555555555555555554 456666666655554332 233444444444444
Q ss_pred HHhhHHHHHHHH
Q 039206 135 ELQSKEDELNLV 146 (645)
Q Consensus 135 el~~le~eL~~l 146 (645)
+|....+++.-|
T Consensus 96 kI~k~~~el~~L 107 (258)
T PF15397_consen 96 KIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 238
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.12 E-value=1.5e+02 Score=35.42 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039206 506 ELASLL 511 (645)
Q Consensus 506 el~~l~ 511 (645)
++..++
T Consensus 493 ~v~~ll 498 (670)
T KOG0239|consen 493 EVDILL 498 (670)
T ss_pred HHHHHH
Confidence 334333
No 239
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.22 E-value=69 Score=31.08 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 193 AMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 193 ~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
.+.+.+..++.+.+..+...-.+++.++..-...+.++.+++..|..+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y 74 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334444444444444444444445555555555555555555555443
No 240
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.12 E-value=50 Score=33.58 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.8
Q ss_pred hHHHhHHHHHhh
Q 039206 11 FAYLVTDIAILS 22 (645)
Q Consensus 11 ~~~~~~~~~~~~ 22 (645)
|..|+..||++.
T Consensus 6 f~iL~~Eial~~ 17 (216)
T KOG1962|consen 6 FTILYAEIALFL 17 (216)
T ss_pred HHHHHHHHHHHH
Confidence 445566666554
No 241
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.08 E-value=53 Score=32.66 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLE 217 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIe 217 (645)
|+.++.++..+....+.+--.|..+..-+.
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455555555556666666665555554443
No 242
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.94 E-value=43 Score=28.61 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNL 244 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~ 244 (645)
+.++.+++.+..+....+...++++..|...-.++..++..+.+++.....++...
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666677777777777777777666666665544
No 243
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=77.69 E-value=1.1e+02 Score=33.08 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=4.2
Q ss_pred HHHHHHHhh
Q 039206 442 TCILLLEQL 450 (645)
Q Consensus 442 ~cillLE~L 450 (645)
.|-.|...|
T Consensus 284 dcRrLfDsL 292 (401)
T PF06785_consen 284 DCRRLFDSL 292 (401)
T ss_pred HHHHHHhhh
Confidence 344444444
No 244
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.58 E-value=30 Score=32.38 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=11.6
Q ss_pred hcchHhhhhhHHHHH--HHHHHHHHHhhhh
Q 039206 44 FDLPHEQLGLFTAQW--IQELFDLTMKSLE 71 (645)
Q Consensus 44 ~~~~~~~~~~~~~~~--~e~~~~~~r~~~~ 71 (645)
+..+..+.+.+..++ +..++..+...+.
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 4444444444333
No 245
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.21 E-value=55 Score=33.27 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 229 FMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEE 281 (645)
Q Consensus 229 ~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~ 281 (645)
......+++..+++++++...+++.++++...+.++.+.+..+.+++.+.-..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33444444444555555555554444444555555555555555544444333
No 246
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.06 E-value=27 Score=29.36 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039206 82 MKIRLLDERAKEIENK 97 (645)
Q Consensus 82 ~~~~~~ee~~~~~e~~ 97 (645)
.+..+|..+-.+.+.+
T Consensus 9 EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKL 24 (74)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 247
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.01 E-value=55 Score=30.52 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE----SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNS 134 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~----~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~ 134 (645)
+-+-.+=+|+..+ +.+.....+|+..-..+...+ .+|..+...+++..+-....+.++..++..++....
T Consensus 30 ~sD~M~vTrr~m~------~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~ 103 (126)
T PF07889_consen 30 FSDLMFVTRRSMS------DAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGD 103 (126)
T ss_pred hhHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555444 444444455555444444333 344444445555555555555555555555555555
Q ss_pred HHhhHHHHHHHHHHhhh
Q 039206 135 ELQSKEDELNLVKNSAE 151 (645)
Q Consensus 135 el~~le~eL~~le~ei~ 151 (645)
++..+..-+..|+..|.
T Consensus 104 dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 104 DVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 248
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.36 E-value=28 Score=33.28 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le 140 (645)
++++...+.-+...++.++.+++.+...+.+++.-++.++
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555444444433
No 249
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.24 E-value=33 Score=34.21 Aligned_cols=13 Identities=8% Similarity=-0.389 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhh
Q 039206 59 IQELFDLTMKSLE 71 (645)
Q Consensus 59 ~e~~~~~~r~~~~ 71 (645)
+|.|-++.+-=++
T Consensus 81 LE~~GFnV~~l~~ 93 (190)
T PF05266_consen 81 LEEHGFNVKFLRS 93 (190)
T ss_pred HHHcCCccHHHHH
Confidence 6666555444333
No 250
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.16 E-value=5.4 Score=42.77 Aligned_cols=107 Identities=12% Similarity=0.200 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l 268 (645)
+.+...+..+...+..+..++..+...+.+...+|..+...+..+...+..+...+..+...+......+..+...++..
T Consensus 45 ~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~l 124 (326)
T PF04582_consen 45 ASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSAL 124 (326)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhh
Confidence 33333344444444444444444444444444444443333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206 269 EREFCRIQERIEESSQELLLKENQLKS 295 (645)
Q Consensus 269 e~E~~~l~~~le~~~~ei~e~e~el~~ 295 (645)
.-.+..++..+....-.|..++.++..
T Consensus 125 sTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 125 STDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 333333333333333444444444433
No 251
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=76.16 E-value=89 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 212 VKAKLESEKRELELTQTFMKDLLVKLR 238 (645)
Q Consensus 212 le~eIee~e~ELeel~~~i~ele~El~ 238 (645)
++.++...+.++...+.++..-+..+.
T Consensus 69 ~E~E~~~~~~el~~~E~rl~~rE~~L~ 95 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRLQQREEQLD 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333333
No 252
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.01 E-value=57 Score=29.00 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKEL 181 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~i 181 (645)
|..+++.+..+|+++++.+
T Consensus 68 Le~~~e~le~~i~~l~~~~ 86 (105)
T cd00632 68 LKERLETIELRIKRLERQE 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 253
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.84 E-value=1.7e+02 Score=34.30 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 60 QELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 60 e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
++++-.+-+.++ ++.-||+++..+++.-...|.+++.=|+.++..|...++-
T Consensus 110 QerLaRLe~dke---sL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEm 161 (861)
T KOG1899|consen 110 QERLARLEMDKE---SLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEM 161 (861)
T ss_pred HHHHHHHhcchh---hheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHH
Confidence 345555555566 6667777777777777777666666666666665555443
No 254
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.22 E-value=10 Score=30.17 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE 203 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~ 203 (645)
+.++..++.+++..|...++++++++..++.++..+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665666666655555543
No 255
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.13 E-value=1.9e+02 Score=34.56 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 216 LESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQ 292 (645)
Q Consensus 216 Iee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~e 292 (645)
|..++.++..+......+......+..+..+....+.....++......+.... ..+ .....+-.++.++..-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~---~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEK---EERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhhcC
Confidence 444444444444444444444444444444444444444444444444443333 111 2333444555555543
No 256
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.11 E-value=1e+02 Score=31.56 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH
Q 039206 37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE 98 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~ 98 (645)
.-+|+.-++..++-...+...+ .+..+..++..+. ..-..-+..++++++.....+..+
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A---~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALA---QAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444 6666666666665 444555566666666655555554
No 257
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=74.98 E-value=1.1e+02 Score=31.62 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.0
Q ss_pred HhhHHHHHHH
Q 039206 336 REFDSLRKAV 345 (645)
Q Consensus 336 ~e~~~~~~~~ 345 (645)
.++..++..+
T Consensus 204 ~Ei~~lk~~l 213 (247)
T PF06705_consen 204 EEIAALKNAL 213 (247)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 258
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=74.93 E-value=9.8 Score=41.85 Aligned_cols=8 Identities=38% Similarity=0.169 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 039206 285 ELLLKENQ 292 (645)
Q Consensus 285 ei~e~e~e 292 (645)
.+.+++..
T Consensus 180 kl~DlEnr 187 (370)
T PF02994_consen 180 KLDDLENR 187 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33444443
No 259
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.54 E-value=41 Score=32.50 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=8.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVL 183 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~ 183 (645)
+...|..++.++..++.++..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 260
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.26 E-value=1.4e+02 Score=32.52 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 039206 233 LLVKLRLYEDN 243 (645)
Q Consensus 233 le~El~~lr~e 243 (645)
++.++..++.+
T Consensus 247 l~~~l~~l~~~ 257 (344)
T PF12777_consen 247 LEEKLAALQKE 257 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.69 E-value=1.2e+02 Score=31.42 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.2
Q ss_pred hhhCChh
Q 039206 375 NLTSSGR 381 (645)
Q Consensus 375 c~~md~~ 381 (645)
+.+.||+
T Consensus 196 ~~t~Dg~ 202 (251)
T PF11932_consen 196 YQTLDGS 202 (251)
T ss_pred eECCCcc
Confidence 3444444
No 262
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.35 E-value=1.8e+02 Score=33.49 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.7
Q ss_pred HHHhHH
Q 039206 33 AELKKE 38 (645)
Q Consensus 33 ~~~~~~ 38 (645)
-+|||.
T Consensus 66 e~Wrq~ 71 (570)
T COG4477 66 EEWRQK 71 (570)
T ss_pred HHHHHH
Confidence 344443
No 263
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.30 E-value=20 Score=31.86 Aligned_cols=37 Identities=5% Similarity=-0.004 Sum_probs=22.0
Q ss_pred chHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHH
Q 039206 46 LPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIR 85 (645)
Q Consensus 46 ~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~ 85 (645)
..=++.-.+-.+| +...++.++.++. .++++|.....
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN---~~sk~I~~~~~ 64 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERN---ELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHhh
Confidence 3444444566666 7777777777766 55555554443
No 264
>PLN02939 transferase, transferring glycosyl groups
Probab=72.96 E-value=2.5e+02 Score=34.96 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 164 QKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 164 ~~~ieei~~eI~~~e~~ie~~eke 187 (645)
..+..-++.|--.+.+.|+.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444555544444555444433
No 265
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.89 E-value=2.1e+02 Score=34.03 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNL 145 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~ 145 (645)
..+..+....+++.+...+++......-++|.....+.+.+++++.....+++....-+..+.+-+-+
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGe 229 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGE 229 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444333334455555555555555555555555555555555554433
No 266
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.89 E-value=2.1e+02 Score=34.20 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEK 179 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~ 179 (645)
+..+++++++.+...+.
T Consensus 891 L~dRveE~~E~L~~a~e 907 (1480)
T COG3096 891 LADRVEEIRERLDEAQE 907 (1480)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666655543
No 267
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.17 E-value=28 Score=31.31 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHH
Q 039206 92 KEIENKESELVLVEKKIKDC--NFELACKEKELGFVRKRIGVCNSELQSKEDELN 144 (645)
Q Consensus 92 ~~~e~~~~eie~~e~~lee~--~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~ 144 (645)
.++...+.++..+|.+++.+ ..++..++.+|.++++++...+..+..+..-++
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555 556666666666666666655555555444333
No 268
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.98 E-value=78 Score=28.75 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 263 KELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 263 ~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+.......++..+...+..+..++..++..+..+
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444
No 269
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.62 E-value=1.3e+02 Score=31.22 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=11.2
Q ss_pred CCChhhHHHHHHHHHHHHHhc
Q 039206 456 EINSQVQGEALKVAVEWKKNM 476 (645)
Q Consensus 456 ~i~~~vke~A~~lA~~WK~~i 476 (645)
+..|+++-.|.-+-.+.-.+.
T Consensus 240 pltp~aRisalnivgDllRkv 260 (333)
T KOG1853|consen 240 PLTPDARISALNIVGDLLRKV 260 (333)
T ss_pred CCCchhhHHHHHHHHHHHHHh
Confidence 455666665555555444433
No 270
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.40 E-value=1.3e+02 Score=31.19 Aligned_cols=8 Identities=13% Similarity=-0.022 Sum_probs=5.7
Q ss_pred hhhhhCCh
Q 039206 373 PENLTSSG 380 (645)
Q Consensus 373 ~lc~~md~ 380 (645)
.-|++||.
T Consensus 198 ~~~er~dt 205 (333)
T KOG1853|consen 198 VEAERTDT 205 (333)
T ss_pred hhhhhcch
Confidence 56788875
No 271
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.21 E-value=1.3e+02 Score=30.90 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELT 226 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel 226 (645)
|.+.+.++..+...+.....+...++.++.......+.+
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 272
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=71.17 E-value=99 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206 121 ELGFVRKRIGVCNSELQSKEDELNLV 146 (645)
Q Consensus 121 el~~l~~~i~e~~~el~~le~eL~~l 146 (645)
.....-+.+++..+.++.+..+|+.+
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l 78 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVL 78 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 33444444555555555555555543
No 273
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.63 E-value=67 Score=27.42 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206 237 LRLYEDNLQSLQSTVRLRENELECKEKELELKE 269 (645)
Q Consensus 237 l~~lr~e~e~l~eel~~~~~ele~~~~ele~le 269 (645)
...++..++.+..+...++.+......++..+-
T Consensus 41 ~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 41 VQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 274
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=70.17 E-value=2e+02 Score=32.82 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred HHHHHHHHHHH--hhcCCCCCChHHHHHHHHhhhcccc
Q 039206 484 LVVLGFLHLLA--AYKLASAFDGNELASLLDIVANHRQ 519 (645)
Q Consensus 484 l~al~fL~~la--~ygi~~~f~~del~~l~~~v~~~~~ 519 (645)
.++-.-|+=|. -|+=-+.|...+....+-..+....
T Consensus 438 s~~~s~L~rL~re~yls~~~f~~~e~q~~~q~l~~q~~ 475 (596)
T KOG4360|consen 438 SDLGSALQRLSRENYLSEGSFFLEEMQRKVQTLAQQPE 475 (596)
T ss_pred chHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCC
Confidence 33334444444 4555556777777777766655444
No 275
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.38 E-value=1.4e+02 Score=30.69 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~eke 187 (645)
+....+.+...++.+.+++..++..
T Consensus 83 ~~~~~~~~~~~l~~L~~ri~~L~~~ 107 (247)
T PF06705_consen 83 ISEKQEQLQSRLDSLNDRIEALEEE 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 276
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=68.95 E-value=1.9e+02 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 270 REFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 270 ~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
.|+..+...+..+...+...+..+..+
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L 350 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKL 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 277
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=68.65 E-value=1.5e+02 Score=30.70 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039206 229 FMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFC 273 (645)
Q Consensus 229 ~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~ 273 (645)
-+......+-+...++.....+..............+..+++.+.
T Consensus 122 mLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lk 166 (239)
T PF05276_consen 122 MLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLK 166 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433333334444444444444333
No 278
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.09 E-value=2.7e+02 Score=33.47 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=54.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIE 280 (645)
Q Consensus 201 ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le 280 (645)
++..+..---.++..+.+..+.++.++.+..++-+-++..+++-..+.+. +.++..++-.....++ .+..
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~-------~~ekd~~l~~~kq~~d---~e~~ 497 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM-------FQEKDQELLENKQQFD---IETT 497 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHH---HHHH
Confidence 34444444444444444445555555555444444444443333333333 4444444333333333 2334
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhh
Q 039206 281 ESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELR 334 (645)
Q Consensus 281 ~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~ 334 (645)
++.-++++.-..++.++-+++..++|=....+.+.--..+|.++.+-.+.|...
T Consensus 498 rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555553333333333333333443333444333
No 279
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=67.87 E-value=86 Score=27.60 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 205 IEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 205 ~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+...+......+..+..++..++.++..+..+......+.......
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~ 53 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRS 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444444444444444433333
No 280
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.62 E-value=1.3e+02 Score=29.53 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKREL--ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~EL--eel~~~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
+..+..+|..+++++.++...+..++++|.++.+-| +++++.+.++.++.++.+..+.+.+.-.+...
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 456777888888888888888888888888887755 78888888888888888888888777655443
No 281
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=67.25 E-value=2.4e+02 Score=32.47 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039206 237 LRLYEDNLQSLQSTVRLRENELECKEKEL 265 (645)
Q Consensus 237 l~~lr~e~e~l~eel~~~~~ele~~~~el 265 (645)
+..++.+++-+++++..++..++.++.++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 282
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.87 E-value=81 Score=36.40 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDER 90 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~ 90 (645)
++++|+-.+..-. +.|.++-.-++..
T Consensus 297 lesyF~taFt~fq------~~v~t~~s~ve~~ 322 (758)
T COG4694 297 LESYFDTAFTSFQ------ESVATIKSGVEDY 322 (758)
T ss_pred HHHHHhHHHHHHH------HHHHHHHhhHHhh
Confidence 7888887776554 5555555555543
No 283
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.87 E-value=2.7e+02 Score=33.05 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=23.8
Q ss_pred HHHHHHHHHhh-hhcCCCCChhhHHHHHHHHHHHHHhccc
Q 039206 440 RRTCILLLEQL-SSLAPEINSQVQGEALKVAVEWKKNMED 478 (645)
Q Consensus 440 r~~cillLE~L-~~~~p~i~~~vke~A~~lA~~WK~~i~~ 478 (645)
|.+.++|.+.= ++....=-|.+.+.+..-...|-.....
T Consensus 407 Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~ 446 (660)
T KOG4302|consen 407 RGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGR 446 (660)
T ss_pred ccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCC
Confidence 56666666652 2221111666777788888888877654
No 284
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=66.82 E-value=1.1e+02 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKD 232 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~e 232 (645)
+..+.+|...+..|+....++.+....+-..+.++..-...+.+
T Consensus 11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544444
No 285
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.42 E-value=2.9e+02 Score=33.22 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHHH
Q 039206 381 RNLQILLNQHLRRHDVIFCNVFDTI 405 (645)
Q Consensus 381 ~~L~~~i~~~~ke~~~lr~e~~~AL 405 (645)
.+.|.|++.--.++...+.|.+.+.
T Consensus 593 tSIMsYLkkLE~~~~f~~se~~~~~ 617 (861)
T PF15254_consen 593 TSIMSYLKKLETNHSFTHSEPLFSI 617 (861)
T ss_pred chHHHHHHhhccccccccCCCcccC
Confidence 4578999877777666666665443
No 286
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.14 E-value=2.5e+02 Score=32.37 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhHHhhHHHHHHH
Q 039206 324 FEERVREFELREREFDSLRKAV 345 (645)
Q Consensus 324 le~~~~eLE~~n~e~~~~~~~~ 345 (645)
+++.|.+|+.+..+.++...++
T Consensus 516 ~eel~~alektkQel~~tkarl 537 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARL 537 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHH
Confidence 4555666666666666655554
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.07 E-value=2e+02 Score=31.99 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=7.4
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 039206 78 IDVDMKIRLLDERAKEIE 95 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e 95 (645)
..|..+++.|+-..++..
T Consensus 62 ~~i~~lqkkL~~y~~~l~ 79 (395)
T PF10267_consen 62 QTIAQLQKKLEQYHKRLK 79 (395)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.83 E-value=2.1e+02 Score=34.91 Aligned_cols=44 Identities=27% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR 238 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~ 238 (645)
|+.+..-+.+-..+.+.+-..++..+.+++.....+.....++.
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~ 547 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAE 547 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445544444444444443333333333333
No 289
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=64.31 E-value=2.1e+02 Score=30.81 Aligned_cols=180 Identities=15% Similarity=0.187 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhh-chH----HHHHHH
Q 039206 93 EIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLN-LKK----EKQKRL 167 (645)
Q Consensus 93 ~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le-~k~----el~~~i 167 (645)
..+....-+.+.++.+++-+..-..++..-..+...+.++.......++-|+.....++-+. ++- .|- -++...
T Consensus 110 a~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~-ql~~aKlq~~~~l~a~~ 188 (391)
T KOG1850|consen 110 AVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWE-QLGKAKLQEIKLLTAKL 188 (391)
T ss_pred HHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 34444455666666666666666555555555555555555555555555544444433221 110 000 011111
Q ss_pred HHhHHHHHHHHHHHHH-----HHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 168 ESLDGEVRESEKELVL-----MKEQKA-------SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV 235 (645)
Q Consensus 168 eei~~eI~~~e~~ie~-----~ekeie-------el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~ 235 (645)
++ +...++++-. +..-++ .++.++..+..+..+...-..--..-+..++.+++.+..++..+++
T Consensus 189 ee----~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEK 264 (391)
T KOG1850|consen 189 EE----ASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEK 264 (391)
T ss_pred HH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111221111 111111 2223333333333333333333333455555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 236 KLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQE 277 (645)
Q Consensus 236 El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~ 277 (645)
+--..+..-++....+-.+..+.....+.+..++..+..|++
T Consensus 265 E~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~Lek 306 (391)
T KOG1850|consen 265 ETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEK 306 (391)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444444444444444444444444333
No 290
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.10 E-value=68 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEK 201 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~e 201 (645)
|.+++..+++..-.++.++...+....++..+|+.+..+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444434444444443333
No 291
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.43 E-value=99 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=8.1
Q ss_pred HHHHHhHhHHHHhhHHHHHHHH
Q 039206 125 VRKRIGVCNSELQSKEDELNLV 146 (645)
Q Consensus 125 l~~~i~e~~~el~~le~eL~~l 146 (645)
+..+|+.+.+.+..+.+.+.++
T Consensus 74 ~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 74 LEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 292
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.10 E-value=2.7e+02 Score=31.71 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYE 241 (645)
Q Consensus 191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr 241 (645)
-+..|..+.+++.++.......-..|+..+..+.++..++..+--.+..++
T Consensus 353 ~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr 403 (508)
T KOG3091|consen 353 HRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILR 403 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444455555555555555544444444443
No 293
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=62.91 E-value=2.6e+02 Score=31.43 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=21.5
Q ss_pred HHhHHHHHhhhcchHhhhhhHHHHH----HHHHHHHHHhhhh
Q 039206 34 ELKKETLRRSFDLPHEQLGLFTAQW----IQELFDLTMKSLE 71 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~r~~~~ 71 (645)
+.+...|++..+-+..+...+...+ .....+.....+.
T Consensus 187 ~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~ 228 (458)
T COG3206 187 EAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLT 228 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4455666666666777766666666 3333444444444
No 294
>PRK10698 phage shock protein PspA; Provisional
Probab=62.17 E-value=1.9e+02 Score=29.51 Aligned_cols=37 Identities=3% Similarity=0.013 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE 98 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~ 98 (645)
+++.+..++.... ..-..-.+.+++++.....+...+
T Consensus 36 m~~~l~~~r~alA---~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 36 MEDTLVEVRSTSA---RALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655444 333444445555555555554444
No 295
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.07 E-value=2.5e+02 Score=33.83 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 174 VRESEKELVLMKEQKASIRAMIEACTEKLEAIEESY 209 (645)
Q Consensus 174 I~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~i 209 (645)
.....+.++.+++++..++.+++..+.++...+.+.
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444445555555555666666555555555543
No 296
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=61.58 E-value=1.4e+02 Score=27.91 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhHHh
Q 039206 311 EKELISVGKSIRQFEERVREFELRERE 337 (645)
Q Consensus 311 e~el~~v~~~i~~le~~~~eLE~~n~e 337 (645)
..++.+.-. -.++-..+.++++..++
T Consensus 105 HKdLwefh~-~erLa~EI~~l~~sKEQ 130 (134)
T PF15233_consen 105 HKDLWEFHM-PERLAREICALESSKEQ 130 (134)
T ss_pred HHHHHHhcc-HHHHHHHHHHHHhhHHH
Confidence 334555444 35666666666655433
No 297
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.45 E-value=1.8e+02 Score=29.04 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 039206 231 KDLLVKLR 238 (645)
Q Consensus 231 ~ele~El~ 238 (645)
.+++.++.
T Consensus 134 ~~Le~ki~ 141 (190)
T PF05266_consen 134 KELEMKIL 141 (190)
T ss_pred HHHHHHHH
Confidence 33333333
No 298
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.69 E-value=2.8e+02 Score=33.38 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHhhcC
Q 039206 481 KDSLVVLGFLHLLAAYKL 498 (645)
Q Consensus 481 ~~sl~al~fL~~la~ygi 498 (645)
|++..+..+-..++..|-
T Consensus 544 GKTtva~nLA~~la~~G~ 561 (726)
T PRK09841 544 GKTFVSSTLAAVIAQSDQ 561 (726)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 456667777777777664
No 299
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.24 E-value=93 Score=33.75 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=11.7
Q ss_pred hccccchHHH--hhhCCCCCcchhhh
Q 039206 515 ANHRQTPKLR--RSLGFADEVPVMHH 538 (645)
Q Consensus 515 ~~~~~~~~L~--~~lgl~~ki~~~v~ 538 (645)
..+-|.--|. ++||=.+.|-..|+
T Consensus 227 Q~~YQ~~~Ly~l~AlG~~~~mdvt~e 252 (330)
T PF07851_consen 227 QYRYQRGCLYRLRALGKRHNMDVTVE 252 (330)
T ss_pred HHHHHHhHHHHHHHhccCccceeeec
Confidence 3344444443 45666666544444
No 300
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=60.07 E-value=1.3e+02 Score=31.88 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+.||.+..+...+-.+++.+=....+....+...+..-.....-...+...+.+.-.+++.+..++++.|
T Consensus 259 ~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G 328 (384)
T KOG0972|consen 259 KALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQG 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444444444444444455555555555555555555555554
No 301
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=59.58 E-value=1.6e+02 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=8.4
Q ss_pred HHHHHhhHHHHHHHHHHhh
Q 039206 314 LISVGKSIRQFEERVREFE 332 (645)
Q Consensus 314 l~~v~~~i~~le~~~~eLE 332 (645)
+..+..++.++-.++++|+
T Consensus 93 l~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 93 LGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHhHHHHHHHHHHHHHHcC
Confidence 3334444444444444444
No 302
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.08 E-value=1.7e+02 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=13.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~eke 187 (645)
.++.+..++.++.+++.+|..+...
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~l 94 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSL 94 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666554444
No 303
>PRK14011 prefoldin subunit alpha; Provisional
Probab=59.05 E-value=1.2e+02 Score=28.85 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 039206 174 VRESEKELVLM 184 (645)
Q Consensus 174 I~~~e~~ie~~ 184 (645)
++-++++++.+
T Consensus 90 ~~~~~~ri~~l 100 (144)
T PRK14011 90 IEDFKKSVEEL 100 (144)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 304
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.70 E-value=2.5e+02 Score=31.37 Aligned_cols=15 Identities=27% Similarity=0.116 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039206 220 KRELELTQTFMKDLL 234 (645)
Q Consensus 220 e~ELeel~~~i~ele 234 (645)
.+-++.++.++..++
T Consensus 304 ~E~~Es~qtRisklE 318 (395)
T PF10267_consen 304 WEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 305
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=58.62 E-value=78 Score=36.42 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=5.1
Q ss_pred hhCCCchhh
Q 039206 406 RKAADPALL 414 (645)
Q Consensus 406 ~~a~dPa~L 414 (645)
..+.||++=
T Consensus 366 e~~adp~~~ 374 (907)
T KOG2264|consen 366 ELSADPSRR 374 (907)
T ss_pred HhccCCccc
Confidence 456677653
No 306
>PRK12705 hypothetical protein; Provisional
Probab=58.45 E-value=3.4e+02 Score=31.31 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=10.2
Q ss_pred chHHHhhhCCCCCcchhhh
Q 039206 520 TPKLRRSLGFADEVPVMHH 538 (645)
Q Consensus 520 ~~~L~~~lgl~~ki~~~v~ 538 (645)
+..+++..|+.+.+.+.|.
T Consensus 374 GaeLlkk~~~p~~Vv~aI~ 392 (508)
T PRK12705 374 GAELARKFNEPDEVINAIA 392 (508)
T ss_pred HHHHHHhcCCCHHHHHHHH
Confidence 4566666665544444443
No 307
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.34 E-value=1.9e+02 Score=28.28 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 039206 188 KASIRAMIEAC 198 (645)
Q Consensus 188 ieel~~eIE~~ 198 (645)
|..++.+|+..
T Consensus 140 i~~lr~~iE~~ 150 (177)
T PF07798_consen 140 IANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 308
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.05 E-value=2.5e+02 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 170 LDGEVRESEKELVLMKEQKASIRAMIE 196 (645)
Q Consensus 170 i~~eI~~~e~~ie~~ekeieel~~eIE 196 (645)
++..++..++++...+.+|++++.++.
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 309
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.99 E-value=2.3e+02 Score=29.10 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~ 138 (645)
+.+-+-+.|.+.- .-+...-+.+-....+.+.+.+-+.+.++++....+-+....+....++.+|.....+++.
T Consensus 31 ~D~f~q~~r~~~~------nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 31 IDSFIQSPRRRSM------NSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHH
Q 039206 139 KEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGE 173 (645)
Q Consensus 139 le~eL~~le~ei~~~~~~le~k~el~~~ieei~~e 173 (645)
+...+..++.+..++...|..|+++..+..+..++
T Consensus 105 l~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~k 139 (246)
T KOG4657|consen 105 LRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGK 139 (246)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
No 310
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=57.76 E-value=71 Score=31.47 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHH--hHHHHHhhHHHHHHHHHHhhhhH
Q 039206 266 ELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEK--ELISVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 266 e~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~--el~~v~~~i~~le~~~~eLE~~n 335 (645)
+-++...+.+..+++.+...++.+-..+.+| +-... +++++-..+.+++.++..+|+.+
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY-----------qll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVVSY-----------QLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555556666666667777777777 44444 88888888899999998888765
No 311
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.47 E-value=1.3e+02 Score=33.68 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=7.0
Q ss_pred ccchhHHHHHHhccc
Q 039206 623 KVPGKLSVIEIQMYW 637 (645)
Q Consensus 623 k~p~~i~~l~~~~~~ 637 (645)
-+|-+|-.++.+.|+
T Consensus 389 ai~R~i~Aile~~~~ 403 (418)
T TIGR00414 389 AIGRTIVAILENYQT 403 (418)
T ss_pred HHHHHHHHHHHHccC
Confidence 344555555544443
No 312
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.74 E-value=3.2e+02 Score=30.66 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=13.0
Q ss_pred hhhhHHHhHHHHHhhcch
Q 039206 8 VFDFAYLVTDIAILSSGL 25 (645)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (645)
..--+|++|.+|+...|-
T Consensus 25 ~~sas~~at~~aa~~agd 42 (575)
T KOG4403|consen 25 WISASELATNVAAVVAGD 42 (575)
T ss_pred hhHHHHhhcchhhhhcCC
Confidence 344578888888886665
No 313
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.81 E-value=1.4e+02 Score=33.83 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 193 AMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRL 239 (645)
Q Consensus 193 ~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~ 239 (645)
+.|..+..++++.+.++..+..+=+.+.++.+.++++...++..+..
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44555555556666666666555555666666666666555555543
No 314
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.39 E-value=3e+02 Score=29.79 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 181 LVLMKEQKASIRAMIEACTEKLEAIEES 208 (645)
Q Consensus 181 ie~~ekeieel~~eIE~~e~ei~e~~e~ 208 (645)
...+++++...+.++..++.++.+.+.+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555444443
No 315
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.09 E-value=1.2e+02 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=17.3
Q ss_pred hHHHhHHHHHhhcchhhHHHhHHHHhHHHHHhhhcchHhh
Q 039206 11 FAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQ 50 (645)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (645)
|+.|+.-|+++.- .|--+ -.-+|+.-|+-....+...
T Consensus 9 f~~L~~Ei~~~~l--L~lPl-p~~~R~~i~~~~~~~~~~~ 45 (192)
T PF05529_consen 9 FGLLYAEIAVLLL--LVLPL-PSPIRRKIFKFLDKSFFSG 45 (192)
T ss_pred HHHHHHHHHHHHH--HHHhC-CcHHHHHHHHHHHHHHHHH
Confidence 5566666665431 11101 1256666665554444433
No 316
>PF15294 Leu_zip: Leucine zipper
Probab=55.01 E-value=2.9e+02 Score=29.35 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206 184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQT 228 (645)
Q Consensus 184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~ 228 (645)
+.++|..++.+-+.+.+++.....+....-.+=...+..|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554444444444444443
No 317
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.87 E-value=1.2e+02 Score=34.85 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039206 258 LECKEKELELKEREF 272 (645)
Q Consensus 258 le~~~~ele~le~E~ 272 (645)
+..+.++++.++.++
T Consensus 154 ~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 154 IRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 318
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.82 E-value=1.5e+02 Score=29.68 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.8
Q ss_pred HhhHHHHHHHHHH
Q 039206 136 LQSKEDELNLVKN 148 (645)
Q Consensus 136 l~~le~eL~~le~ 148 (645)
+..++.++..++.
T Consensus 141 L~YK~~ql~~~~~ 153 (195)
T PF12761_consen 141 LDYKERQLRELEE 153 (195)
T ss_pred HHHHHHHHHhhhc
Confidence 5556666666654
No 319
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.19 E-value=1.3e+02 Score=25.12 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 039206 267 LKEREFCRIQERIE 280 (645)
Q Consensus 267 ~le~E~~~l~~~le 280 (645)
.+..+.....++++
T Consensus 57 qlk~e~~~WQerlr 70 (79)
T COG3074 57 QLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333344443
No 320
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=54.18 E-value=4.7e+02 Score=31.57 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhc
Q 039206 59 IQELFDLTMKSLEKQ 73 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~ 73 (645)
++.++..+|.+++|-
T Consensus 434 Le~elekLk~eilKA 448 (762)
T PLN03229 434 LEGEVEKLKEQILKA 448 (762)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999988854
No 321
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.84 E-value=1.3e+02 Score=25.09 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039206 236 KLRLYEDNLQSLQST 250 (645)
Q Consensus 236 El~~lr~e~e~l~ee 250 (645)
+...++..++.+..+
T Consensus 40 e~q~~q~~reaL~~e 54 (79)
T COG3074 40 EVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 322
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.90 E-value=1.1e+02 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039206 234 LVKLRLYEDNLQSLQST 250 (645)
Q Consensus 234 e~El~~lr~e~e~l~ee 250 (645)
..|+.+++..++++..+
T Consensus 92 s~EL~ele~krqel~se 108 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSE 108 (907)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33444444444444444
No 323
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=4.3e+02 Score=30.64 Aligned_cols=61 Identities=7% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 88 DERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 88 ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.++..-+..+...+++--.+|.+++++++.+++.-..+.+++++....-+.+...+..+..
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3444555555556666667788888888888888777877777766665555555555543
No 324
>PRK11519 tyrosine kinase; Provisional
Probab=51.18 E-value=5.1e+02 Score=31.13 Aligned_cols=18 Identities=6% Similarity=0.146 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHhhcC
Q 039206 481 KDSLVVLGFLHLLAAYKL 498 (645)
Q Consensus 481 ~~sl~al~fL~~la~ygi 498 (645)
|++..+..+-..++..|-
T Consensus 539 GKTt~a~nLA~~la~~g~ 556 (719)
T PRK11519 539 GKTFVCANLAAVISQTNK 556 (719)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 456666666666666554
No 325
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.61 E-value=2.8e+02 Score=28.00 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039206 237 LRLYEDNLQSLQSTVRLRENELECKEKELELKER 270 (645)
Q Consensus 237 l~~lr~e~e~l~eel~~~~~ele~~~~ele~le~ 270 (645)
...++.++......+..+...+..++..+.....
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 326
>PRK11519 tyrosine kinase; Provisional
Probab=50.46 E-value=5.2e+02 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 179 KELVLMKEQKASIRAMIEACTEKLEAIEES 208 (645)
Q Consensus 179 ~~ie~~ekeieel~~eIE~~e~ei~e~~e~ 208 (645)
+.++.+++++..++.+++..+.++...+.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 327
>PRK10698 phage shock protein PspA; Provisional
Probab=49.24 E-value=3e+02 Score=27.99 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIE 280 (645)
Q Consensus 201 ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le 280 (645)
+.......+..++.+++.....+..++..+..+..++..++.....+...+..+.....-. ..+... ....-....+
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~-~~~~~~--~~~~a~~~f~ 169 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVR-RQLDSG--KLDEAMARFE 169 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC--CcchHHHHHH
Confidence 3444555666666667777777777777777777777777777777766655554432211 111111 1122233444
Q ss_pred HHHHHHHHHHHhHHHH
Q 039206 281 ESSQELLLKENQLKSV 296 (645)
Q Consensus 281 ~~~~ei~e~e~el~~~ 296 (645)
+.+..+..++.+...+
T Consensus 170 rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 170 SFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHhHh
Confidence 4555555555555544
No 328
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.99 E-value=6e+02 Score=31.33 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLM 184 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ 184 (645)
...++.++.++++.++++++.+
T Consensus 465 ~~~~q~~ls~el~el~k~l~~K 486 (913)
T KOG0244|consen 465 HPQKQGSLSGELSELEKRLAEK 486 (913)
T ss_pred chHHHhhhhHHHHHHHhhhccc
Confidence 3344455555555555555443
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.70 E-value=94 Score=36.73 Aligned_cols=19 Identities=21% Similarity=0.045 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039206 217 ESEKRELELTQTFMKDLLV 235 (645)
Q Consensus 217 ee~e~ELeel~~~i~ele~ 235 (645)
+..+.+++.+..+|.++..
T Consensus 608 ~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 608 ASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 330
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=48.59 E-value=5.8e+02 Score=31.06 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHHHhccccC-----CchHHHHHHHHHHHh
Q 039206 457 INSQVQGEALKVAVEWKKNMEDTV-----KDSLVVLGFLHLLAA 495 (645)
Q Consensus 457 i~~~vke~A~~lA~~WK~~i~~~~-----~~sl~al~fL~~la~ 495 (645)
.++++...|..=...-|++...+. ....+++.++-.|.+
T Consensus 1280 daaSliaeaqekleeEkakflenle~qekRk~eeamNl~tSlia 1323 (1424)
T KOG4572|consen 1280 DAASLIAEAQEKLEEEKAKFLENLECQEKRKCEEAMNLLTSLIA 1323 (1424)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344444445444444444443321 134455555544443
No 331
>PRK00106 hypothetical protein; Provisional
Probab=48.51 E-value=5e+02 Score=30.23 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 039206 485 VVLGFLHLLAAY 496 (645)
Q Consensus 485 ~al~fL~~la~y 496 (645)
...|+||-++-+
T Consensus 377 ~~AGLLHDIGK~ 388 (535)
T PRK00106 377 RRAGFLHDMGKA 388 (535)
T ss_pred HHHHHHHhccCc
Confidence 334555544433
No 332
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=5.1e+02 Score=30.12 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=12.6
Q ss_pred cchhhhHHHh-----HHHHHhhcchhhH
Q 039206 6 SAVFDFAYLV-----TDIAILSSGLVLV 28 (645)
Q Consensus 6 ~~~~~~~~~~-----~~~~~~~~~~~~~ 28 (645)
+++|-|+.|- |=++||+||-..+
T Consensus 472 ~pi~Gf~~L~d~~G~~IV~vLsSGecI~ 499 (741)
T KOG4460|consen 472 APIRGFWILPDILGPTIVCILSSGECII 499 (741)
T ss_pred ccccceeeccccCCceEEEEecCCcEEE
Confidence 4555554332 2245788886555
No 333
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.16 E-value=5.2e+02 Score=30.04 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHh
Q 039206 550 PLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAF 587 (645)
Q Consensus 550 pllk~~a~k~a~~wk~~~~~~~~~~lea~~~L~~I~~y 587 (645)
..|+.-++++|.+|....+ .-+++...+..|.+|
T Consensus 547 ~~L~g~~~~~a~dW~~~ar----~~le~~q~~~~l~a~ 580 (582)
T PF09731_consen 547 NQLKGWARKLAADWLKEAR----RRLEVEQALEVLEAH 580 (582)
T ss_pred HhCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3577788899999985443 345666666666554
No 334
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.01 E-value=73 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKEL 265 (645)
Q Consensus 233 le~El~~lr~e~e~l~eel~~~~~ele~~~~el 265 (645)
++.++..++...+.+..++..+..+.+.+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444433333333333
No 335
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=46.42 E-value=2.6e+02 Score=26.33 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.0
Q ss_pred HHHhhhhH
Q 039206 328 VREFELRE 335 (645)
Q Consensus 328 ~~eLE~~n 335 (645)
|.+++.++
T Consensus 93 l~Dle~K~ 100 (136)
T PF04871_consen 93 LGDLEEKR 100 (136)
T ss_pred HHhHHHHH
Confidence 33333333
No 336
>PRK00295 hypothetical protein; Provisional
Probab=46.32 E-value=1.3e+02 Score=24.93 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206 115 LACKEKELGFVRKRIGVCNSELQSKEDEL 143 (645)
Q Consensus 115 ~~~~~~el~~l~~~i~e~~~el~~le~eL 143 (645)
++.+...+..-...|+.+...+..+...+
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 337
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.20 E-value=1.3e+02 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=15.9
Q ss_pred HHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 126 RKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 126 ~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
..++..+.+++..+++++..++..+...+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~ 31 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNEN 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 34445555555555555556665555544
No 338
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.36 E-value=3.1e+02 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHh
Q 039206 118 KEKELGFVRKRIGVCNSELQSKEDELNLVKNS 149 (645)
Q Consensus 118 ~~~el~~l~~~i~e~~~el~~le~eL~~le~e 149 (645)
+++++..+.+++.+...=++++|.+|..+...
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444445555555555555555543
No 339
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=44.19 E-value=2.3e+02 Score=27.23 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 039206 196 EACTEKLE 203 (645)
Q Consensus 196 E~~e~ei~ 203 (645)
+..++.+.
T Consensus 54 ~~ieNdlg 61 (157)
T COG3352 54 TDIENDLG 61 (157)
T ss_pred HHHHhhcc
Confidence 33333333
No 340
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.18 E-value=1.4e+02 Score=24.89 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206 116 ACKEKELGFVRKRIGVCNSELQSKEDEL 143 (645)
Q Consensus 116 ~~~~~el~~l~~~i~e~~~el~~le~eL 143 (645)
+.+..-+..-+..|+.....+..+...+
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 341
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.06 E-value=2.2e+02 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHhhHHHHHH
Q 039206 93 EIENKESELVLVEKKIKDCNFELACKEKELGFVRK---RIGVCNSELQSKEDELN 144 (645)
Q Consensus 93 ~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~---~i~e~~~el~~le~eL~ 144 (645)
.++...++...+..++..+...+....+.|..+.. ..+++..+|..++.+..
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444 34444444444444444
No 342
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.75 E-value=5.3e+02 Score=29.21 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHH
Q 039206 280 EESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVR 329 (645)
Q Consensus 280 e~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~ 329 (645)
-++..++.+++.+|..- .++....-++....++..+.....++-++++
T Consensus 472 g~~~revrdlE~qI~~E--~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 472 GALKREVRDLESQIYVE--EQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred chHHHHHHHHHHHHhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666542 2222223334444466666666666655554
No 343
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.70 E-value=1.9e+02 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR 238 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~ 238 (645)
|.+++.+++-...-|+++...+.+.+..++.++.++.-+.++|.
T Consensus 10 i~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 10 IIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333433333444444444444333333333
No 344
>PRK00846 hypothetical protein; Provisional
Probab=42.33 E-value=2.1e+02 Score=24.45 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHH
Q 039206 98 ESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVK 147 (645)
Q Consensus 98 ~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le 147 (645)
+.+|.++|..+.--+.-++.+...+......|+.....+..+...+.+++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444444444444444444443
No 345
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=42.30 E-value=2.7e+02 Score=25.55 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 039206 192 RAMIEACTEKLEAIEESYD 210 (645)
Q Consensus 192 ~~eIE~~e~ei~e~~e~ie 210 (645)
+..+.+++..+.+....+.
T Consensus 42 ~~rv~GLe~AL~~v~~~Ct 60 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCT 60 (115)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3445555555555444443
No 346
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.28 E-value=4.3e+02 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=8.7
Q ss_pred hHHHHHhhHHHHHHHHHHhh
Q 039206 313 ELISVGKSIRQFEERVREFE 332 (645)
Q Consensus 313 el~~v~~~i~~le~~~~eLE 332 (645)
++..-...|..++..+..|.
T Consensus 194 ei~~~re~i~el~e~I~~L~ 213 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLR 213 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 347
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.22 E-value=5.8e+02 Score=29.22 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHH
Q 039206 86 LLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQK 165 (645)
Q Consensus 86 ~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~ 165 (645)
.+.++.+.--+--.+|++.++...++...+-.+--.++-++..--.+...-+++...|..|-++++.= .++..
T Consensus 363 ~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P-------nq~k~ 435 (508)
T KOG3091|consen 363 RVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP-------NQLKA 435 (508)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh-------HHHHH
Confidence 33333333344446677777777777777777777777777776666666666777777777666641 25777
Q ss_pred HHHHhHHHHHHHH
Q 039206 166 RLESLDGEVRESE 178 (645)
Q Consensus 166 ~ieei~~eI~~~e 178 (645)
|+.++.+-++...
T Consensus 436 Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 436 RLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHhhc
Confidence 7777755555443
No 348
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.88 E-value=3.8e+02 Score=27.04 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 202 LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLR 254 (645)
Q Consensus 202 i~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~ 254 (645)
..........++..+...+..+..+...+..+..++..++.....+...+..+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555555555555444333
No 349
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=40.49 E-value=5.8e+02 Score=28.72 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=6.0
Q ss_pred hhcCCCCCChHHH
Q 039206 495 AYKLASAFDGNEL 507 (645)
Q Consensus 495 ~ygi~~~f~~del 507 (645)
.|.|.--|..|+.
T Consensus 409 ~y~i~~~fN~De~ 421 (447)
T KOG2751|consen 409 SYSIKVQFNSDEN 421 (447)
T ss_pred ceeEEeeecchHH
Confidence 3444444444443
No 350
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.86 E-value=5.3e+02 Score=28.08 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 039206 321 IRQFEERVRE 330 (645)
Q Consensus 321 i~~le~~~~e 330 (645)
|..++.++.|
T Consensus 203 I~~LEsKVqD 212 (401)
T PF06785_consen 203 IGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 351
>PRK12705 hypothetical protein; Provisional
Probab=39.75 E-value=6.5e+02 Score=29.09 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhccc
Q 039206 442 TCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMED 478 (645)
Q Consensus 442 ~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~~ 478 (645)
.-..-|+.|...++-.+..+-+-+.++-..+...+..
T Consensus 253 ia~~~l~~Li~dgri~p~rIeevv~~~~~~~~~~i~~ 289 (508)
T PRK12705 253 IARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIYE 289 (508)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3366677776666655566666666666666666554
No 352
>PRK00846 hypothetical protein; Provisional
Probab=39.41 E-value=1.9e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 039206 93 EIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNS 134 (645)
Q Consensus 93 ~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~ 134 (645)
++..++..+.--+.-|+++...+......++.++..+.....
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334443333333333333333333333
No 353
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.25 E-value=2.5e+02 Score=31.51 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 039206 271 EFCRIQERIEESSQELLLKENQLKSVLACIEDCS 304 (645)
Q Consensus 271 E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~ 304 (645)
+...+.+++..+..++..+++++...-..|++.-
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3334444444444444444444444444444443
No 354
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.11 E-value=2.7e+02 Score=32.54 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=7.7
Q ss_pred hhhHhhhhcCCCCCC
Q 039206 412 ALLVLDAMSGFYPPH 426 (645)
Q Consensus 412 a~LVLd~~e~~~~~~ 426 (645)
+.+.++-.-+++.++
T Consensus 389 ~~~~~~g~~~~~~~g 403 (555)
T TIGR03545 389 GKLTVKGVLDLRQPG 403 (555)
T ss_pred ceEEEeeEEecccCC
Confidence 555555555555444
No 355
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.08 E-value=1.6e+02 Score=32.92 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=16.4
Q ss_pred hhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHH
Q 039206 49 EQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVD 81 (645)
Q Consensus 49 ~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~ 81 (645)
+++-.+-.+| +..++++++.++. ..+++|.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN---~~sk~i~ 61 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRN---ELSKQIG 61 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3344455555 6666666666666 4445553
No 356
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=38.97 E-value=5.8e+02 Score=28.25 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVR----LRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKS 295 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~----~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~ 295 (645)
+.-|..+..-+..+..++..+..++........ .....++.....+..+-.++..+....+.-+.-+.++=..|+.
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhchhhhHHHH---hHHHHHhhHHHHHHHHHHhhhhH--HhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCC-C
Q 039206 296 VLACIEDCSKEDQVKEK---ELISVGKSIRQFEERVREFELRE--REFDSLRKAVEDSSKNLELRQKKLSDILQLHPK-R 369 (645)
Q Consensus 296 ~~~~i~~~~~e~~~ke~---el~~v~~~i~~le~~~~eLE~~n--~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~-~ 369 (645)
+ |.-.. .--++-+++.-+...+..|+.-- .+|.++-.-+..-. +|....+.|-. |
T Consensus 97 L-----------D~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~--------~L~~~F~~yksi~ 157 (383)
T PF04100_consen 97 L-----------DNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVK--------ELLEHFKPYKSIP 157 (383)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHHcccCcH
Q ss_pred CCchhhhhCCh--hHHHHHHHHhhhhhhhhhhhhHHHHhhCC-CchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHH
Q 039206 370 SAAPENLTSSG--RNLQILLNQHLRRHDVIFCNVFDTIRKAA-DPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILL 446 (645)
Q Consensus 370 ~l~~lc~~md~--~~L~~~i~~~~ke~~~lr~e~~~AL~~a~-dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cill 446 (645)
+...|..+++. ..|..-|..-|+..+.....-.++..... ..|-+|+|+++.-+.... +.|-|-..
T Consensus 158 ~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~l-----------i~wf~~~q 226 (383)
T PF04100_consen 158 QIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREEL-----------IDWFCNKQ 226 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHH-----------HHHHHHHH
Q ss_pred HHhhhhc
Q 039206 447 LEQLSSL 453 (645)
Q Consensus 447 LE~L~~~ 453 (645)
|..+..+
T Consensus 227 L~eY~~i 233 (383)
T PF04100_consen 227 LKEYRRI 233 (383)
T ss_pred HHHHHHH
No 357
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.72 E-value=3.1e+02 Score=25.01 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=4.0
Q ss_pred HHHHHHHHHhh
Q 039206 59 IQELFDLTMKS 69 (645)
Q Consensus 59 ~e~~~~~~r~~ 69 (645)
++.+++.++..
T Consensus 18 l~~~~~~l~~~ 28 (129)
T cd00584 18 LQQELARLNEA 28 (129)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 358
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.61 E-value=6.1e+02 Score=28.43 Aligned_cols=9 Identities=67% Similarity=0.807 Sum_probs=4.0
Q ss_pred hhhHhhhhc
Q 039206 412 ALLVLDAMS 420 (645)
Q Consensus 412 a~LVLd~~e 420 (645)
+..|||+-+
T Consensus 167 ~~~~ld~h~ 175 (459)
T KOG0288|consen 167 ALFVLDAHE 175 (459)
T ss_pred hhhhhhccc
Confidence 444444444
No 359
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.57 E-value=4.9e+02 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~eke 187 (645)
|+|..-+...-+.+..+...+..+-+.
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~ 129 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTED 129 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666677777777777777665443
No 360
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.57 E-value=2.5e+02 Score=23.68 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHh
Q 039206 83 KIRLLDERAKEIENKESELVLVEKKIKD-CNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS 149 (645)
Q Consensus 83 ~~~~~ee~~~~~e~~~~eie~~e~~lee-~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~e 149 (645)
.+..|+.+.++-..++=+|--++..+.. .....++.-.+-..+..++.....++..+.+-|...++.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555552 233444444444444444444444444444444444433
No 361
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.26 E-value=3.5e+02 Score=25.22 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhcCCchHhHHHHHHHHHH
Q 039206 61 ELFDLTMKSLEKQSSSSIDVDMKIRLLDE 89 (645)
Q Consensus 61 ~~~~~~r~~~~~~~~~~~~v~~~~~~~ee 89 (645)
+.|..+..++. +...+|..+..+++-
T Consensus 23 N~Fsrl~~R~~---~lk~dik~~k~~~en 48 (131)
T KOG1760|consen 23 NEFSRLNSRKD---DLKADIKEAKTEIEN 48 (131)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHH
Confidence 34444445554 444555444444443
No 362
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.31 E-value=1.5e+02 Score=33.66 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=13.3
Q ss_pred hhCCCchhhHhhhhcCCCCCC
Q 039206 406 RKAADPALLVLDAMSGFYPPH 426 (645)
Q Consensus 406 ~~a~dPa~LVLd~~e~~~~~~ 426 (645)
..-.||.-+||.....-..|+
T Consensus 235 ~aq~nP~Pv~lRi~~~aiLPN 255 (475)
T PRK13729 235 TGNESTVPMQLRITGLVEMPN 255 (475)
T ss_pred cccCCCccEEEEEcccccCCC
Confidence 344577777877777554443
No 363
>PF15294 Leu_zip: Leucine zipper
Probab=36.28 E-value=5.5e+02 Score=27.25 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~eke 187 (645)
++.+|..++.|...+..++-..+++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~ 154 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQ 154 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444433
No 364
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=36.08 E-value=5.8e+02 Score=27.48 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKE 180 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ 180 (645)
|.+++..++.+--.+++.
T Consensus 111 L~rkl~qLr~EK~~lE~~ 128 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQ 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 365
>PLN02320 seryl-tRNA synthetase
Probab=35.89 E-value=3e+02 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=11.2
Q ss_pred chHHHhhhCCCCCcchhh
Q 039206 520 TPKLRRSLGFADEVPVMH 537 (645)
Q Consensus 520 ~~~L~~~lgl~~ki~~~v 537 (645)
+-+++..|||-.++-++-
T Consensus 368 ~e~i~~~LgLpyrvv~l~ 385 (502)
T PLN02320 368 EEDLFTSLGLHFKTLDMA 385 (502)
T ss_pred HHHHHHHcCCCeEEEEec
Confidence 356677777766554443
No 366
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.81 E-value=6.6e+02 Score=30.05 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=80.3
Q ss_pred hhhHhhhhcCCCCCCCC---------CC-----cccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhcc
Q 039206 412 ALLVLDAMSGFYPPHSR---------EG-----YVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNME 477 (645)
Q Consensus 412 a~LVLd~~e~~~~~~~~---------~~-----~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~ 477 (645)
-.||.+++.-|+.-+.. -+ -...+.+...|.|..|.-|.+-++++-..-+-.-|.++-..+-..-.
T Consensus 178 ~~l~~~iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~ 257 (878)
T KOG2005|consen 178 LDLVQEIVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR 257 (878)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH
Confidence 46888888766543321 00 11123345889999999998777665555566666555444333211
Q ss_pred -------ccC-----------CchHHHHHHHHHHHhhcCCCCCCh-HHHHHHHHhhhccccchHHHhhhCCC-CCcchhh
Q 039206 478 -------DTV-----------KDSLVVLGFLHLLAAYKLASAFDG-NELASLLDIVANHRQTPKLRRSLGFA-DEVPVMH 537 (645)
Q Consensus 478 -------~~~-----------~~sl~al~fL~~la~ygi~~~f~~-del~~l~~~v~~~~~~~~L~~~lgl~-~ki~~~v 537 (645)
.+. ..++-=--|.++|++.|+.-+++. +++..++.+.--...--.|.|-|.+. .|+|+=|
T Consensus 258 al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Lse~f~~LarELeimepk~pedI 337 (878)
T KOG2005|consen 258 ALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLSEHFLYLARELEIMEPKVPEDI 337 (878)
T ss_pred HHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHHHHHHHHHHHhcccCCCChHHH
Confidence 111 123334478999999999999974 77777776665555567777777776 7788855
Q ss_pred hh
Q 039206 538 HE 539 (645)
Q Consensus 538 ~~ 539 (645)
-+
T Consensus 338 yK 339 (878)
T KOG2005|consen 338 YK 339 (878)
T ss_pred HH
Confidence 44
No 367
>PLN02678 seryl-tRNA synthetase
Probab=35.37 E-value=2.8e+02 Score=31.48 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 039206 271 EFCRIQERIEESSQELLLKENQLKSVLACIEDCS 304 (645)
Q Consensus 271 E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~ 304 (645)
+...+.+++..+..++..+++++.+.-..|++.-
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3334444444444555555555555544544443
No 368
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.32 E-value=1.5e+02 Score=33.65 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=5.6
Q ss_pred CCChhhHHHHH
Q 039206 592 AFDGNELESLL 602 (645)
Q Consensus 592 ~f~~d~L~k~v 602 (645)
-|..|++.+.+
T Consensus 445 ~~~~d~~~~~~ 455 (475)
T PRK13729 445 GFNTDQMLKQL 455 (475)
T ss_pred CCCHHHHHHHH
Confidence 35555555544
No 369
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.21 E-value=2.9e+02 Score=23.65 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRI 275 (645)
Q Consensus 233 le~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l 275 (645)
+..+...++...++....+..--.++...+..+.+++.....+
T Consensus 16 ~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 16 LSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444433
No 370
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.03 E-value=5.7e+02 Score=27.02 Aligned_cols=124 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred hcchhhHHHhHHHHhHHHHHhhhcchHhhhh---hHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHH
Q 039206 22 SSGLVLVELRVAELKKETLRRSFDLPHEQLG---LFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIEN 96 (645)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~ 96 (645)
+..++|-=|--..|-++..-+...-+-+=+. .+...+ +..++.++++... ....+...+...|+++..+.++
T Consensus 75 ~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Ln---nvasdea~L~~Kierrk~ElEr 151 (338)
T KOG3647|consen 75 RGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLN---NVASDEAALGSKIERRKAELER 151 (338)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
..++++.++.=-=..=.+.+.-++++.++=...-..-.-+..++..++..-+
T Consensus 152 ~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 152 TRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
No 371
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.97 E-value=3.1e+02 Score=23.91 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 233 le~El~~lr~e~e~l~ee 250 (645)
++.++..+...+..+.++
T Consensus 37 ~e~ei~~l~~dr~rLa~e 54 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQE 54 (89)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333344444444433
No 372
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.81 E-value=1.9e+02 Score=23.90 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKEL 181 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~i 181 (645)
+..++...+.++..+.+.+
T Consensus 59 ~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 59 YKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444433
No 373
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.71 E-value=7.2e+02 Score=28.13 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhHHhh
Q 039206 322 RQFEERVREFELREREF 338 (645)
Q Consensus 322 ~~le~~~~eLE~~n~e~ 338 (645)
+.+...+..||...-+-
T Consensus 365 ~~y~sAlaaLE~AR~EA 381 (434)
T PRK15178 365 ARWESALQTLQQGKLQA 381 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888766443
No 374
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.13 E-value=1.9e+02 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=9.2
Q ss_pred HhHhHHHHhhHHHHHHHHHHhhh
Q 039206 129 IGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 129 i~e~~~el~~le~eL~~le~ei~ 151 (645)
|+..+.++..-..+|+.++..+.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333444444444443
No 375
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.89 E-value=3.5e+02 Score=31.59 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.4
Q ss_pred hCCCchhhHhhhhc
Q 039206 407 KAADPALLVLDAMS 420 (645)
Q Consensus 407 ~a~dPa~LVLd~~e 420 (645)
.--.|..+-|++..
T Consensus 372 ~~g~P~~~~l~~~~ 385 (555)
T TIGR03545 372 LLGKPTTINLSAEA 385 (555)
T ss_pred hhCCCeEEEEecCC
Confidence 34455555555554
No 376
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.59 E-value=2.2e+02 Score=33.58 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=5.8
Q ss_pred HHHHHhhcchh
Q 039206 16 TDIAILSSGLV 26 (645)
Q Consensus 16 ~~~~~~~~~~~ 26 (645)
+.|.++..|.+
T Consensus 495 d~i~~l~~G~i 505 (638)
T PRK10636 495 DDLYLVHDGKV 505 (638)
T ss_pred CEEEEEECCEE
Confidence 44555555654
No 377
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=33.47 E-value=8.4e+02 Score=28.53 Aligned_cols=6 Identities=50% Similarity=1.065 Sum_probs=2.5
Q ss_pred HHHHHh
Q 039206 385 ILLNQH 390 (645)
Q Consensus 385 ~~i~~~ 390 (645)
.+++.|
T Consensus 586 ~~~s~h 591 (607)
T KOG0240|consen 586 LLISQH 591 (607)
T ss_pred HHHHHH
Confidence 344444
No 378
>COG5283 Phage-related tail protein [Function unknown]
Probab=33.18 E-value=1.1e+03 Score=29.97 Aligned_cols=173 Identities=12% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKA-------SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRL 239 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeie-------el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~ 239 (645)
|..+++.|....+.--.++++.. .-....+.+.+.......-++++..++.+...-....++...++..++..
T Consensus 24 in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tq 103 (1213)
T COG5283 24 INVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQ 103 (1213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHh
Q 039206 240 YEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGK 319 (645)
Q Consensus 240 lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~ 319 (645)
....+.++...+......+.-.+++++.++-++..+......+-...+.-...++..+..+.++..-....-..+.+--.
T Consensus 104 ae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~aln~q~~ 183 (1213)
T COG5283 104 AENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLE 183 (1213)
T ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206 320 SIRQFEERVREFELREREFDSLRKAV 345 (645)
Q Consensus 320 ~i~~le~~~~eLE~~n~e~~~~~~~~ 345 (645)
.-..+...+. .-.++-+.++
T Consensus 184 ~t~k~~~~~~------~~l~e~qq~~ 203 (1213)
T COG5283 184 RTKKVADALT------YVLDEAQQKL 203 (1213)
T ss_pred hhhhhhhhhh------hhhHHHHHHH
No 379
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.95 E-value=2.7e+02 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 233 le~El~~lr~e~e~l~ee 250 (645)
+..++.+...+...+..+
T Consensus 30 ~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 380
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=3.9e+02 Score=24.44 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACT 199 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e 199 (645)
+..+++-|..||.++++.|++.+++....++.+-.++
T Consensus 74 V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 74 VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777777665555555444
No 381
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=32.57 E-value=4.5e+02 Score=30.02 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 214 AKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 214 ~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el 293 (645)
.++..+.+..+.-.+++...+.++..+++.+.+...+ +..+.-.+...++.++...++.++.+.+.+.++.++
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk-------~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i 100 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETK-------RSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQI 100 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-------hhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444455555555556666666666666555544444 555554555555555555444444444444444444
No 382
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.48 E-value=2e+02 Score=26.13 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 039206 44 FDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESEL-------------------- 101 (645)
Q Consensus 44 ~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~ei-------------------- 101 (645)
+..+..+.+.+..++ +..++..+...+. ++.....-|+.+... ...+--+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~-------e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v 72 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIA-------ELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLV 72 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEE
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHH
Q 039206 102 ---------VLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELN 144 (645)
Q Consensus 102 ---------e~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~ 144 (645)
...+..++-+++.+..+.+.+..+...+......+..+...++
T Consensus 73 ~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 73 SIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 383
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.43 E-value=3.1e+02 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 214 AKLESEKRELELTQTFMKDLLVKLR 238 (645)
Q Consensus 214 ~eIee~e~ELeel~~~i~ele~El~ 238 (645)
..|..++.+-..+.-++.-++..+.
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344445555555555555444444
No 384
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=32.38 E-value=3.4e+02 Score=24.29 Aligned_cols=8 Identities=50% Similarity=0.451 Sum_probs=3.0
Q ss_pred HHHHhHHH
Q 039206 288 LKENQLKS 295 (645)
Q Consensus 288 e~e~el~~ 295 (645)
.++.++.+
T Consensus 55 ~le~~l~e 62 (100)
T PF06428_consen 55 QLEKQLKE 62 (100)
T ss_dssp HHHHCTTH
T ss_pred HHHHHHHH
Confidence 33333333
No 385
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=32.29 E-value=3.2e+02 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 227 QTFMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 227 ~~~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
..-+..+..+|..++-+...+..+++.+.
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~~d 44 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQMD 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445555555555555555555544443
No 386
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.98 E-value=8.9e+02 Score=28.35 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=6.0
Q ss_pred chhhHhhhhc
Q 039206 411 PALLVLDAMS 420 (645)
Q Consensus 411 Pa~LVLd~~e 420 (645)
.+.||+|=|.
T Consensus 454 ~ptlIFDEVD 463 (557)
T COG0497 454 TPTLIFDEVD 463 (557)
T ss_pred CCeEEEeccc
Confidence 3466766655
No 387
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.96 E-value=4.3e+02 Score=24.67 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=4.5
Q ss_pred HHHHHHHhhhhH
Q 039206 324 FEERVREFELRE 335 (645)
Q Consensus 324 le~~~~eLE~~n 335 (645)
++..|.+-+.+-
T Consensus 105 L~k~I~~~e~iI 116 (126)
T PF09403_consen 105 LDKEIAEQEQII 116 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 388
>PLN02372 violaxanthin de-epoxidase
Probab=31.40 E-value=5.9e+02 Score=28.53 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHhhh
Q 039206 138 SKEDELNLVKNSAE 151 (645)
Q Consensus 138 ~le~eL~~le~ei~ 151 (645)
++++.++..++.|.
T Consensus 365 ~l~~~~e~~e~~i~ 378 (455)
T PLN02372 365 RLEKDVEEGEKTIV 378 (455)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 389
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=31.38 E-value=1.9e+02 Score=28.35 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=11.0
Q ss_pred HHHhHHHHhHHHHHhhhc
Q 039206 28 VELRVAELKKETLRRSFD 45 (645)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (645)
++--|.+.|+.-|....+
T Consensus 32 s~~nV~kmR~Kwes~~~s 49 (181)
T PF04645_consen 32 SRVNVWKMRQKWESSEDS 49 (181)
T ss_pred hHHHHHHHHHHHHhcCCc
Confidence 344456777777766655
No 390
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.14 E-value=8.5e+02 Score=28.41 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHhHHHHHhhhcchHhhhhhHHHHH---HHHHHHHHHhhhh
Q 039206 34 ELKKETLRRSFDLPHEQLGLFTAQW---IQELFDLTMKSLE 71 (645)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~r~~~~ 71 (645)
.|.+++++..+..+..+...+..++ +.++-.+--...+
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888877777 6665554444443
No 391
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.58 E-value=3.6e+02 Score=28.19 Aligned_cols=12 Identities=8% Similarity=0.384 Sum_probs=7.1
Q ss_pred hHHHHhhCCCCC
Q 039206 359 LSDILQLHPKRS 370 (645)
Q Consensus 359 l~~~i~~~p~~~ 370 (645)
+..++..||.+.
T Consensus 166 f~~fl~~yP~s~ 177 (263)
T PRK10803 166 FQNFVKKYPDST 177 (263)
T ss_pred HHHHHHHCcCCc
Confidence 345667777653
No 392
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=30.39 E-value=1e+02 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~eke 187 (645)
.-|.++|+-++..|..++++|+.++..
T Consensus 71 ~~l~RRiDYV~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 71 DVLSRRIDYVQQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557788888888888888887766554
No 393
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.21 E-value=3.2e+02 Score=30.70 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhh
Q 039206 275 IQERIEESSQELLLKENQLKSVLACI 300 (645)
Q Consensus 275 l~~~le~~~~ei~e~e~el~~~~~~i 300 (645)
+..+...+..++..+++++..+..++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 394
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.07 E-value=3.7e+02 Score=23.38 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q 039206 170 LDGEVRESEKEL 181 (645)
Q Consensus 170 i~~eI~~~e~~i 181 (645)
+.+.|+.+++.+
T Consensus 13 L~~aid~LE~~v 24 (89)
T PF13747_consen 13 LEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 395
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.06 E-value=5.6e+02 Score=25.41 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYD 210 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie 210 (645)
.++...+-.+++++..+.+.++
T Consensus 75 arvA~lvinlE~kvD~lee~fd 96 (189)
T TIGR02132 75 ANVASLVINLEEKVDLIEEFFD 96 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 396
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.98 E-value=6.5e+02 Score=26.18 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=6.0
Q ss_pred HHhHHHHHhhHHHH
Q 039206 311 EKELISVGKSIRQF 324 (645)
Q Consensus 311 e~el~~v~~~i~~l 324 (645)
..|--++-+++.=+
T Consensus 120 ~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 120 RADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 397
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=29.88 E-value=1.3e+02 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 81 DMKIRLLDERAKEIENKESELVLVEKKIKDCN 112 (645)
Q Consensus 81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~ 112 (645)
.+++..+.++..++..+..+|..++..|+++.
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 398
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=29.54 E-value=34 Score=33.43 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHHh-----ccchHHHHHHcCCCCccchhHHHHHHhccccchhccc
Q 039206 579 GLLHLLGAFRLAPAFDGNELESLLAIVAE-----DRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFI 644 (645)
Q Consensus 579 ~~L~~I~~y~L~s~f~~d~L~k~v~~~a~-----~k~~~~l~~~lgl~~k~p~~i~~l~~~~~~~~av~~~ 644 (645)
..|+.+-.|++-+ |..++..++..+.. +.-+..+++.||..+. .+|+.|..+|++++|+||+
T Consensus 46 ~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~--~iievLL~~g~vl~ALr~a 112 (167)
T PF07035_consen 46 SQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYE--EIIEVLLSKGQVLEALRYA 112 (167)
T ss_pred HHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHH--HHHHHHHhCCCHHHHHHHH
Confidence 4455555555544 45566666655543 2223466666665442 4668899999999999997
No 399
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=29.41 E-value=3.4e+02 Score=23.05 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 224 ELTQTFMKDLLVKLRLYEDNLQSLQS 249 (645)
Q Consensus 224 eel~~~i~ele~El~~lr~e~e~l~e 249 (645)
..++..++.++.+...++.+.+.++.
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~ 32 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLES 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555554444443
No 400
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.40 E-value=8e+02 Score=27.02 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=7.6
Q ss_pred HHHHhhhcchHhhhh
Q 039206 38 ETLRRSFDLPHEQLG 52 (645)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (645)
+++++++.+|.++..
T Consensus 97 ~RL~~Ev~EL~eEl~ 111 (388)
T PF04912_consen 97 QRLRREVEELKEELE 111 (388)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 401
>PLN02678 seryl-tRNA synthetase
Probab=29.26 E-value=3.4e+02 Score=30.76 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=7.9
Q ss_pred hHHHhhhCCCCCc
Q 039206 521 PKLRRSLGFADEV 533 (645)
Q Consensus 521 ~~L~~~lgl~~ki 533 (645)
-.++..|||--++
T Consensus 313 ~~i~~~L~lpyrv 325 (448)
T PLN02678 313 EDFYQSLGIPYQV 325 (448)
T ss_pred HHHHHHcCCCeEE
Confidence 4566667766554
No 402
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.19 E-value=5.8e+02 Score=25.31 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 039206 268 KEREFCRI 275 (645)
Q Consensus 268 le~E~~~l 275 (645)
++..++.+
T Consensus 126 l~~K~D~~ 133 (189)
T TIGR02132 126 LDKKLDKI 133 (189)
T ss_pred HHHHHHHH
Confidence 33333333
No 403
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=28.94 E-value=4.5e+02 Score=30.05 Aligned_cols=29 Identities=31% Similarity=0.206 Sum_probs=20.9
Q ss_pred chhhhHHHhHHHHHhhcchhhHHHhHHHH
Q 039206 7 AVFDFAYLVTDIAILSSGLVLVELRVAEL 35 (645)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (645)
+.--|--++-||-||+-|++.-=+++.++
T Consensus 8 m~~~f~~l~r~~~~l~~g~e~ef~rl~k~ 36 (604)
T KOG3564|consen 8 MRNLFEQLVRDIEILGEGNEDEFIRLRKD 36 (604)
T ss_pred HHHhHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 34457789999999999996655554443
No 404
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=5.2e+02 Score=24.71 Aligned_cols=39 Identities=8% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206 107 KIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNL 145 (645)
Q Consensus 107 ~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~ 145 (645)
+++++...+.-++.+++.++..+..++..+.++..-++.
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~t 45 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIET 45 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444433333
No 405
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.48 E-value=9.7e+02 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206 184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKREL 223 (645)
Q Consensus 184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~EL 223 (645)
...+|+++..++..++.+......++..+...++..+.+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek 457 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEK 457 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554444444333333
No 406
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.42 E-value=4.8e+02 Score=24.15 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039206 198 CTEKLEAIEESYDAVKAKLESEKRELE 224 (645)
Q Consensus 198 ~e~ei~e~~e~ie~le~eIee~e~ELe 224 (645)
+.+.+...-.++..++..+.+...-++
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~ 44 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALE 44 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333333
No 407
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.35 E-value=4.2e+02 Score=27.65 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 258 LECKEKELELKEREFCRIQERIEESSQEL 286 (645)
Q Consensus 258 le~~~~ele~le~E~~~l~~~le~~~~ei 286 (645)
+..++..++....+++.+.++-+.+-.++
T Consensus 70 v~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 70 IDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333333333333
No 408
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=28.17 E-value=9.3e+02 Score=27.37 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHH
Q 039206 105 EKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELN 144 (645)
Q Consensus 105 e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~ 144 (645)
+.++++++-++.-..++++.++.-+--++.++..++..+.
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333333333
No 409
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.13 E-value=2.7e+02 Score=29.23 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 039206 172 GEVRESEKEL 181 (645)
Q Consensus 172 ~eI~~~e~~i 181 (645)
.+|+.+|.++
T Consensus 246 eEIreLE~k~ 255 (259)
T PF08657_consen 246 EEIRELERKK 255 (259)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 410
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=28.07 E-value=4.3e+02 Score=23.51 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhch--h----------hhHHHHhHHHHHhhHHHHHHHHHHh
Q 039206 264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK--E----------DQVKEKELISVGKSIRQFEERVREF 331 (645)
Q Consensus 264 ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~--e----------~~~ke~el~~v~~~i~~le~~~~eL 331 (645)
.++-.+.+..-+...+..+..+-+.+..++..|+..+..... . -...+.+|..++.+|..+...+.+|
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eL 88 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMEL 88 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333344444444444444444445555555544433331 1 0112335666666777777777776
Q ss_pred hhhH
Q 039206 332 ELRE 335 (645)
Q Consensus 332 E~~n 335 (645)
+..|
T Consensus 89 q~EN 92 (96)
T PF11365_consen 89 QYEN 92 (96)
T ss_pred hhcc
Confidence 6554
No 411
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=27.89 E-value=2.4e+02 Score=30.77 Aligned_cols=8 Identities=13% Similarity=0.190 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 039206 383 LQILLNQH 390 (645)
Q Consensus 383 L~~~i~~~ 390 (645)
|..||...
T Consensus 209 l~~~l~~~ 216 (378)
T TIGR01554 209 LLAWVAEE 216 (378)
T ss_pred HHHHHHHH
Confidence 34444433
No 412
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.78 E-value=93 Score=32.95 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=3.0
Q ss_pred chHHHHHH
Q 039206 482 DSLVVLGF 489 (645)
Q Consensus 482 ~sl~al~f 489 (645)
+|+....|
T Consensus 195 SSf~F~~F 202 (313)
T KOG3088|consen 195 SSFNFGAF 202 (313)
T ss_pred cchhhHHH
Confidence 33333333
No 413
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.32 E-value=6.3e+02 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 039206 195 IEACTEKLEAIEESYDAV 212 (645)
Q Consensus 195 IE~~e~ei~e~~e~ie~l 212 (645)
++.++.++.+...-+.+.
T Consensus 69 veqLe~ev~EAe~vV~ee 86 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEE 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 414
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.07 E-value=1.4e+02 Score=25.64 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhh
Q 039206 59 IQELFDLTMKSLE 71 (645)
Q Consensus 59 ~e~~~~~~r~~~~ 71 (645)
+.....++|-++.
T Consensus 26 ~~~~~~~lk~Klq 38 (83)
T PF07544_consen 26 LDTATGSLKHKLQ 38 (83)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 415
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.72 E-value=9.5e+02 Score=27.00 Aligned_cols=6 Identities=33% Similarity=1.099 Sum_probs=2.5
Q ss_pred HHHHHH
Q 039206 559 VAGEWK 564 (645)
Q Consensus 559 ~a~~wk 564 (645)
-|.+|-
T Consensus 386 ~asDwt 391 (459)
T KOG0288|consen 386 CASDWT 391 (459)
T ss_pred cccccc
Confidence 344444
No 416
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.65 E-value=5.9e+02 Score=27.80 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 174 VRESEKELVL-MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246 (645)
Q Consensus 174 I~~~e~~ie~-~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~ 246 (645)
|+.....++. .+++++.+..+++.+...-+++.+-+..++..++.++.++..++..+.=+.....+.......
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
No 417
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=26.55 E-value=5.4e+02 Score=24.07 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhch
Q 039206 141 DELNLVKNSAEKWP 154 (645)
Q Consensus 141 ~eL~~le~ei~~~~ 154 (645)
++++++--+|....
T Consensus 92 ~dVeeLV~~IseQP 105 (126)
T PF07028_consen 92 EDVEELVLRISEQP 105 (126)
T ss_pred HHHHHHHHHHHhCc
Confidence 34444444444444
No 418
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=26.51 E-value=1.1e+02 Score=25.57 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.8
Q ss_pred CChhhHHHHHHHHHHHHHhcc
Q 039206 457 INSQVQGEALKVAVEWKKNME 477 (645)
Q Consensus 457 i~~~vke~A~~lA~~WK~~i~ 477 (645)
-+|.+...|+.|-..||..+.
T Consensus 54 ~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 54 KNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999998764
No 419
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.45 E-value=3.6e+02 Score=30.39 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 169 SLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSL 247 (645)
Q Consensus 169 ei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l 247 (645)
+++..+..+...+..+..+++.++..+..+..... ...........+......+..+..++.++..++..+++++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 420
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=26.40 E-value=98 Score=27.55 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHhhhC
Q 039206 489 FLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLG 528 (645)
Q Consensus 489 fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~~lg 528 (645)
|.+++--||-.|....+++..++..+..++.+....+.+|
T Consensus 32 l~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG 71 (98)
T PF14726_consen 32 LKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIG 71 (98)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHcc
No 421
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.39 E-value=4.2e+02 Score=22.81 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 175 RESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVK-----AKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS 249 (645)
Q Consensus 175 ~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le-----~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~e 249 (645)
+.....+..+..++......+..+...+......+.... ..+.....-+..+...+......+..++.+++....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 250 TVRLRENELECKEKELELKEREFCRIQERIEESSQE 285 (645)
Q Consensus 250 el~~~~~ele~~~~ele~le~E~~~l~~~le~~~~e 285 (645)
.+.....+......=.+...........+.+.....
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=26.38 E-value=5e+02 Score=29.25 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 039206 41 RRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE----SELVLVEKKIKDCNFE 114 (645)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~----~eie~~e~~lee~~~e 114 (645)
|.+++.|.+-+..||... +-.-||=+...+. +...++.+|...-.....+.-.-. .-.+-+...|.+++..
T Consensus 478 ~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~d---aMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~ 554 (583)
T KOG3809|consen 478 REKMKQLREKLQDLTKSAYPLGKLFDFINEDID---AMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKE 554 (583)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHH---HHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhH
Q 039206 115 LACKEKELGFVRKRIGVCNSELQSK 139 (645)
Q Consensus 115 ~~~~~~el~~l~~~i~e~~~el~~l 139 (645)
|.+.++++...++.|=.-++.|...
T Consensus 555 I~d~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 555 INDTKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
No 423
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.24 E-value=5e+02 Score=25.59 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhhcchHhhhhhHHHHH--------HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 33 AELKKETLRRSFDLPHEQLGLFTAQW--------IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLV 104 (645)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~ 104 (645)
++-|-+.|.+++-+.=.+.=.+.... ++.+++.++.+.. .+|..-..+++.--++.+..-..++..
T Consensus 69 ~~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~------~~Vd~~~~eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 69 NKAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLC------QQVDQTKNELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp -----------------------------------------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 105 EKKIKDCNFELACKEKELGFVRKRI 129 (645)
Q Consensus 105 e~~lee~~~e~~~~~~el~~l~~~i 129 (645)
.....-++.....++.+|+......
T Consensus 143 ~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 143 QSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 424
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.17 E-value=6.2e+02 Score=24.64 Aligned_cols=132 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 76 SSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVR-KRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 76 ~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~-~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+..-++.....+..-......--.--.+.++..-.....+.+++.++..++ ..+.....+.+.++.+++.++.++.
T Consensus 21 Ae~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~--- 97 (177)
T PF07798_consen 21 AEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR--- 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039206 155 KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA-SIRAMIEACTEKLEAIEESYDAVKAKL 216 (645)
Q Consensus 155 ~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeie-el~~eIE~~e~ei~e~~e~ie~le~eI 216 (645)
.++..--.+++..+..-..++......++ .+++-=.....++..++.++++.+-++
T Consensus 98 ------~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 98 ------EEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.76 E-value=4.1e+02 Score=22.42 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH
Q 039206 89 ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140 (645)
Q Consensus 89 e~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le 140 (645)
+++.++..++-.+.--+.-|+++..-+.+.+..+++++..+..+..++...+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 426
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=25.64 E-value=1.5e+03 Score=28.82 Aligned_cols=222 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206 159 LKKEKQKRLESLDGEVRESEKELVL--------------MKEQKA----SIRAMIEACTEKLEAIEESYDAVKAKLESEK 220 (645)
Q Consensus 159 ~k~el~~~ieei~~eI~~~e~~ie~--------------~ekeie----el~~eIE~~e~ei~e~~e~ie~le~eIee~e 220 (645)
+|+.+.+++-=- .+..|++-++- .++++- +++++|.....++..+ ++.-.---+..-+
T Consensus 1020 IKqmIekKv~L~--~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesL--QRAV~TPVvtd~e 1095 (1439)
T PF12252_consen 1020 IKQMIEKKVVLQ--ALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESL--QRAVVTPVVTDAE 1095 (1439)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHH--HHhhcccccccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Q 039206 221 RELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRI--------QERIEESSQELLLKENQ 292 (645)
Q Consensus 221 ~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l--------~~~le~~~~ei~e~e~e 292 (645)
+.-...+..+..+.++++.+++---.....++..-..+..++.++.-+..+..++ =.-++.++..+..+...
T Consensus 1096 Kvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~k 1175 (1439)
T PF12252_consen 1096 KVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTK 1175 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHhhhhhchhhhHHHH----hHHHHHhhHHHHHHHHHHhhhhH----------------HhhHHHHHHHhhhhhhH
Q 039206 293 LKSVLACIEDCSKEDQVKEK----ELISVGKSIRQFEERVREFELRE----------------REFDSLRKAVEDSSKNL 352 (645)
Q Consensus 293 l~~~~~~i~~~~~e~~~ke~----el~~v~~~i~~le~~~~eLE~~n----------------~e~~~~~~~~~~~~~el 352 (645)
+-++ -+.+--+++...+. .+-.|...++++-+.+.++|-.. ..+|.++.++..-...|
T Consensus 1176 L~dA--yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~L 1253 (1439)
T PF12252_consen 1176 LYDA--YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNL 1253 (1439)
T ss_pred hHHH--HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHH
Q ss_pred HHhHHhhHHHHhhCCCCCCchhhhhCChhHHH---HHHHHhhhhhhhh
Q 039206 353 ELRQKKLSDILQLHPKRSAAPENLTSSGRNLQ---ILLNQHLRRHDVI 397 (645)
Q Consensus 353 ~~k~~~l~~~i~~~p~~~l~~lc~~md~~~L~---~~i~~~~ke~~~l 397 (645)
+...|... +..|.+|+.++|. +++-.|+.-++.+
T Consensus 1254 ------V~~LIn~i-----R~slnqme~~tf~~q~~eiq~n~~ll~~L 1290 (1439)
T PF12252_consen 1254 ------VKALINTI-----RVSLNQMEVKTFEEQEKEIQQNLQLLDKL 1290 (1439)
T ss_pred ------HHHHHHHH-----HHHHHHhhhhhhhhhhHHHHHHHHHHHHH
No 427
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.53 E-value=4.5e+02 Score=29.62 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 225 LTQTFMKDLLVKLRLYEDNLQSLQSTVRLREN------ELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 225 el~~~i~ele~El~~lr~e~e~l~eel~~~~~------ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
.+..++..+..++..++.++..++..+..+.+ -.......+..+......+...+..+..++..+.+++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 428
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.44 E-value=2e+02 Score=29.82 Aligned_cols=90 Identities=19% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHH-HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 47 PHEQLGLFTAQW-IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125 (645)
Q Consensus 47 ~~~~~~~~~~~~-~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l 125 (645)
+.+....+...+ =-+.+.+-+..-+ |.+.+....+..++......+++.+-++... .-+++-.++.+|..+
T Consensus 103 P~~~~~~~l~~l~~~g~v~~~~~~~~---DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v 174 (262)
T PF14257_consen 103 PADKFDSFLDELSELGKVTSRNISSE---DVTEQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRV 174 (262)
T ss_pred CHHHHHHHHHHHhccCceeeeecccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHH
Q ss_pred HHHHhHhHHHHhhHHHHHH
Q 039206 126 RKRIGVCNSELQSKEDELN 144 (645)
Q Consensus 126 ~~~i~e~~~el~~le~eL~ 144 (645)
+.+|+..+..+..+.+.+.
T Consensus 175 ~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 175 RSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHhhc
No 429
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.35 E-value=3.9e+02 Score=22.04 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYE-DNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr-~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
.+...|...-..+..... ++....|...+..+.+....+.+++-|+..+- ..+..+...+...+.++..+++++..
T Consensus 3 ~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 430
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.22 E-value=5.7e+02 Score=23.95 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 175 RESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLR 254 (645)
Q Consensus 175 ~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~ 254 (645)
..+..|+..=..++...+..+..+.+++..+..........|+..+.....+..++..+-..+..++..=-.+..+=+.+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L 112 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEEL 112 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 039206 255 ENELECKEKELEL 267 (645)
Q Consensus 255 ~~ele~~~~ele~ 267 (645)
...++.+..+++.
T Consensus 113 ~~~le~l~~~l~~ 125 (141)
T PF13874_consen 113 RKRLEALEAQLNA 125 (141)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHcC
No 431
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.19 E-value=3.6e+02 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 164 QKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAV 212 (645)
Q Consensus 164 ~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~l 212 (645)
+..++.+-..+..+..++.-+...+..++.++..++++-...-.+++..
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 432
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.97 E-value=5.9e+02 Score=24.05 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHH
Q 039206 62 LFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKED 141 (645)
Q Consensus 62 ~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~ 141 (645)
+..+++..+. .....++.....+....+-+..+.......+..-..++.........+..-+..|.++..|-+.+..
T Consensus 20 ~~~~l~~~~~---~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLE---RANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 433
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.73 E-value=5.1e+02 Score=23.20 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhh-----------------------hhch--------hh
Q 039206 108 IKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSA-----------------------EKWP--------KR 156 (645)
Q Consensus 108 lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei-----------------------~~~~--------~~ 156 (645)
+.++...+..++.++..+...+......+.+.+.-++.++.=- .... ..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred hhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 157 LNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAI 205 (645)
Q Consensus 157 le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~ 205 (645)
++ .-+.+-++-++..++.+.+.++.+++.+..++.++..+...+...
T Consensus 81 ve--~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VE--KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EE--ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 434
>PF15456 Uds1: Up-regulated During Septation
Probab=24.61 E-value=5.7e+02 Score=23.72 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 172 GEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAV-----------KAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 172 ~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~l-----------e~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
.+++.+.+.+..+...++.++..+. ++.+++..-..+..+ ...+...+.++.....++.++..++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 039206 241 EDNLQSLQSTV 251 (645)
Q Consensus 241 r~e~e~l~eel 251 (645)
.+.+......+
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 435
>PF14282 FlxA: FlxA-like protein
Probab=24.49 E-value=4.5e+02 Score=23.51 Aligned_cols=55 Identities=7% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 178 EKELVLMKEQKASIRAMIEACTE----KLEAIEESYDAVKAKLESEKRELELTQTFMKD 232 (645)
Q Consensus 178 e~~ie~~ekeieel~~eIE~~e~----ei~e~~e~ie~le~eIee~e~ELeel~~~i~e 232 (645)
...|..+.++|..+..+|..+.. --......+..+...|..++..+..++....+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 436
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.48 E-value=4.5e+02 Score=22.43 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQT--FMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268 (645)
Q Consensus 191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~--~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l 268 (645)
+.-.++.++..+.+....-..+...|+....+|..+.. ...+.-.... +...+...+.++..+...+...+++...+
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H
Q 039206 269 E 269 (645)
Q Consensus 269 e 269 (645)
+
T Consensus 91 ~ 91 (92)
T PF14712_consen 91 Q 91 (92)
T ss_pred c
No 437
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.43 E-value=4e+02 Score=25.06 Aligned_cols=95 Identities=8% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH---------------------HHHHHHHHhhhhch--hhhh
Q 039206 102 VLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE---------------------DELNLVKNSAEKWP--KRLN 158 (645)
Q Consensus 102 e~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le---------------------~eL~~le~ei~~~~--~~le 158 (645)
+++..++.-+..+++.+..+++.++..+.+...-+..++ ..+.+.++-|-+-| .+++
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 159 LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEAC 198 (645)
Q Consensus 159 ~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~ 198 (645)
+.+.+.++.++..+..+++-+..+...+..+.+.+..+
T Consensus 83 --K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 83 --EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred --ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 438
>PLN02320 seryl-tRNA synthetase
Probab=24.24 E-value=4.3e+02 Score=30.50 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 200 EKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 200 ~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
+++-++..+...+..+++..+.+.+.+.+.+.. .....+.+.+..+...+.+++..++.++..++.++..+.-.+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 439
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.23 E-value=2.9e+02 Score=20.99 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 238 RLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 238 ~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
+.++.+.+.++..++.+..+-+.+..+.+.+..++..+...+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 440
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.12 E-value=26 Score=41.29 Aligned_cols=231 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHHHHhhH-----------HHHHH------HHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206 123 GFVRKRIGVCNSELQSK-----------EDELN------LVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK 185 (645)
Q Consensus 123 ~~l~~~i~e~~~el~~l-----------e~eL~------~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~e 185 (645)
+.+...|+...+++..+ ...|. .....+.+....+- |...+..++..++.+.......-
T Consensus 29 ~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~----L~~~~~~L~~~le~l~~~~~eR~ 104 (619)
T PF03999_consen 29 ARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP----LKEQLPKLRPQLEELRKEKEERM 104 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc----chhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206 186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEK--RELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEK 263 (645)
Q Consensus 186 keieel~~eIE~~e~ei~e~~e~ie~le~eIee~e--~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ 263 (645)
.++.++...++.+-.++.............-...- ..+..++..+..+..+...-...+..+...+..+-.++..--.
T Consensus 105 ~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~ 184 (619)
T PF03999_consen 105 QEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPE 184 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHH--------Hh
Q 039206 264 ----------------ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISV--------GK 319 (645)
Q Consensus 264 ----------------ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v--------~~ 319 (645)
.+.--...++.|...+..+..+.......+.+++..+..+=..++.-+.+.+.. ..
T Consensus 185 ~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~ 264 (619)
T PF03999_consen 185 RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLD 264 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHH
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhC
Q 039206 320 SIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTS 378 (645)
Q Consensus 320 ~i~~le~~~~eLE~~n~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~m 378 (645)
.|..++.++..|+ +.|...+..+|... +.++..+|..+
T Consensus 265 ~i~~l~~El~RL~--------------------~lK~~~lk~~I~~~-R~ei~elWd~~ 302 (619)
T PF03999_consen 265 TIEALEEELERLE--------------------ELKKQNLKEFIEKK-RQEIEELWDKC 302 (619)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHH--------------------HHHHHhHHHHHHHH-HHHHHHHHHHh
No 441
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.04 E-value=5.6e+02 Score=23.43 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDER------AKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVC 132 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~------~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~ 132 (645)
|+.+|+-++.. .-..+|.-+++-|.+. .+-......+|.+++.++.+.+.++..-...=+. ..|...
T Consensus 29 Ie~qI~~Ak~~-----gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~ 101 (115)
T PF06476_consen 29 IEKQIEYAKAH-----GNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKR 101 (115)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHH
Q ss_pred HHHHhhHHHHHHH
Q 039206 133 NSELQSKEDELNL 145 (645)
Q Consensus 133 ~~el~~le~eL~~ 145 (645)
..+|.+-+.+|..
T Consensus 102 ~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 102 QKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHhh
No 442
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.03 E-value=1.1e+03 Score=26.67 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 48 HEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125 (645)
Q Consensus 48 ~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l 125 (645)
++.+.....-+ .++-+ .+|+.+. ..+....+++++..+.-..=..+++.++..++++...+-..-..-..+
T Consensus 127 e~k~~~~~~~~~q~esll-e~~~q~d------a~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESLL-ELRKQLD------AKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHhHHHHhh-HHHHHHHHHHhhhhchhhhh-chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 126 RKRIGVCNSELQS-KEDELNLVKNSAEKWPKRLN-LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE 203 (645)
Q Consensus 126 ~~~i~e~~~el~~-le~eL~~le~ei~~~~~~le-~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~ 203 (645)
..+.......-.. ..+.++.+.--+........ ++..+..--+.+++-|+.....|-.......++...-..+.+++.
T Consensus 200 ~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~ 279 (446)
T KOG4438|consen 200 LAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVT 279 (446)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q ss_pred HHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHH
Q 039206 204 AIEESYDAVKAKLESEKREL---------ELTQTFMKDLLVKLRLYEDNLQSLQ------STVRLRENELECKEKELELK 268 (645)
Q Consensus 204 e~~e~ie~le~eIee~e~EL---------eel~~~i~ele~El~~lr~e~e~l~------eel~~~~~ele~~~~ele~l 268 (645)
.+..-..++.+-+.-..... ......+.+++......+.++..++ +++.....+.....+.....
T Consensus 280 ~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r 359 (446)
T KOG4438|consen 280 NLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENR 359 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhh
Q 039206 269 EREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELR 334 (645)
Q Consensus 269 e~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~ 334 (645)
.. .......+...+.-.....+.+....++++.-.++...+.-+ ++......++..+.++...
T Consensus 360 ~~--E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l-~~~~~r~e~~~~i~aI~l~ 422 (446)
T KOG4438|consen 360 KT--ESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFL-EIARGREELESQIVAITLE 422 (446)
T ss_pred hH--HHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHH
No 443
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=23.93 E-value=6.9e+02 Score=24.42 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred ccchhhhHHHhHHHHHhhcchhhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchH----
Q 039206 5 HSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSI---- 78 (645)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~---- 78 (645)
|.+.||-..+-+.-.-|+.=..=.+=-++.|.+..=....+...=-..-+..++ |...+.....+.. +...
T Consensus 26 ~~~~Fd~~LF~~~~~~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~---~~~~~~~~ 102 (173)
T PF07445_consen 26 HQARFDRQLFSCRSQRLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKK---ESKPSSRK 102 (173)
T ss_pred chhhccHHHHhccCchHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccC---CccccccC
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 79 DVDMKIRLLDERAKEIENKESELVLVEKKIKDC-NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 79 ~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~-~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.+..+-..|.+...=..++..-|.+.+..++.. ..+-.....++..+.+++.+|...+..+|+.|.-.++
T Consensus 103 ~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~Er 173 (173)
T PF07445_consen 103 PIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQRRER 173 (173)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 444
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.48 E-value=6.4e+02 Score=23.93 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 230 MKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 230 i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
+..+...-..+..++....+.+..++.++......++.-...+..++..+.....+++.....+..+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 445
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=23.45 E-value=7.3e+02 Score=24.58 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKE 180 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ 180 (645)
++.++..|-.++-++..-+..+..+..+-..-..-+..-..+-+.-..+.......+. ..+...+.+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~-------------~qL~aAEtR 72 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLS-------------SQLSAAETR 72 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHH-------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039206 181 LVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260 (645)
Q Consensus 181 ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~ 260 (645)
...++++++-++..+..++.+-....++-..+..+-..-..++...-+++.-++.++..+.....-.... +..
T Consensus 73 CslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~K-------i~~ 145 (178)
T PF14073_consen 73 CSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETK-------IKE 145 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 261 KEKELELKEREFCRIQERIEESSQELL 287 (645)
Q Consensus 261 ~~~ele~le~E~~~l~~~le~~~~ei~ 287 (645)
++..+..-+.+..-+.++...+...++
T Consensus 146 LE~KL~eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 146 LEEKLQEEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
No 446
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.43 E-value=7.2e+02 Score=24.49 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 039206 166 RLESLDGEVRESEKELVL---------MKEQKASIRAMIEACTEKLEAIEESYDA-----VKAKLESEKRELELTQTFMK 231 (645)
Q Consensus 166 ~ieei~~eI~~~e~~ie~---------~ekeieel~~eIE~~e~ei~e~~e~ie~-----le~eIee~e~ELeel~~~i~ 231 (645)
+++.++++.+.....++. ..=++.....+|+.+..+|..+...+.. +..++++++.+|..+-..-.
T Consensus 76 ~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e 155 (181)
T PF04645_consen 76 EARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKERE 155 (181)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 039206 232 DLLVKL 237 (645)
Q Consensus 232 ele~El 237 (645)
..+-+|
T Consensus 156 ~~emeL 161 (181)
T PF04645_consen 156 IREMEL 161 (181)
T ss_pred HHHHHH
No 447
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=9.2e+02 Score=27.25 Aligned_cols=100 Identities=25% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHH
Q 039206 202 LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEK----ELELKEREFCRIQE 277 (645)
Q Consensus 202 i~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~----ele~le~E~~~l~~ 277 (645)
+.-+++..+.+...+..+. .-...-.++.+++.+-..+..+.+.++...+.+.+++-.... ....+..+...+.+
T Consensus 4 ~k~ir~n~d~v~~~l~~r~-~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~ 82 (429)
T COG0172 4 LKLIRENPDAVREKLKKRG-GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKE 82 (429)
T ss_pred HHHhhhCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206 278 RIEESSQELLLKENQLKSVLACIED 302 (645)
Q Consensus 278 ~le~~~~ei~e~e~el~~~~~~i~~ 302 (645)
.+..+..++.+++.++..+-..|++
T Consensus 83 ~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 83 KLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHhccHHHHHHHHHHHHHHHhCCC
No 448
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.09 E-value=1.1e+03 Score=26.55 Aligned_cols=135 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Q 039206 198 CTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL-----------------------------------VKLRLYED 242 (645)
Q Consensus 198 ~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele-----------------------------------~El~~lr~ 242 (645)
+...+..+...++.++..++....-+..+........ .++..++.
T Consensus 83 ~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrr 162 (426)
T smart00806 83 IDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQR 162 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHHHHHHhhhhhchh---
Q 039206 243 NLQSLQSTVRLRENELECKEKELELKEREFCRI-------------QERIEESSQELLLKENQLKSVLACIEDCSKE--- 306 (645)
Q Consensus 243 e~e~l~eel~~~~~ele~~~~ele~le~E~~~l-------------~~~le~~~~ei~e~e~el~~~~~~i~~~~~e--- 306 (645)
++..+++-+.....++...-+.+-+.-..+..+ ...-.+++.+-+.+-..+.+++.-++.+.++
T Consensus 163 dLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~ 242 (426)
T smart00806 163 ELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ 242 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206 307 --DQVKEKELISVGKSIRQFEERVREFE 332 (645)
Q Consensus 307 --~~~ke~el~~v~~~i~~le~~~~eLE 332 (645)
+.+....++.|.+.|...+..+..|+
T Consensus 243 RgVRp~~~qLe~v~kdi~~a~keL~~m~ 270 (426)
T smart00806 243 RGVRPSKKQLETVQKELETARKELKKME 270 (426)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 449
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=22.99 E-value=7e+02 Score=24.19 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 039206 174 VRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV--------KLRLYEDNLQ 245 (645)
Q Consensus 174 I~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~--------El~~lr~e~e 245 (645)
+.-...-+....+..+.++..+..+...+......++.....++.....+.....++..+.. ++-..+.-++
T Consensus 3 ~~a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~ 82 (158)
T PF09486_consen 3 ASAWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRD 82 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHh
Q 039206 246 SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKE 313 (645)
Q Consensus 246 ~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~e 313 (645)
.+..++..++..+..+...+.....++......+.+..+.++--.+.+..++-.++-...+....+.+
T Consensus 83 ~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~DEEae 150 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQDEEAE 150 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcchHHH
No 450
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=22.75 E-value=1e+03 Score=27.02 Aligned_cols=102 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039206 111 CNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA 189 (645)
Q Consensus 111 ~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeie 189 (645)
.++++..++..++.+-+.+.=+.+-+.-+.++++....++..|. . -+.-..+++.+-.-.-..-+-+..+|.
T Consensus 477 ~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse-------~rq~~~elq~eq~~t~~a~epL~~~la 549 (583)
T KOG3809|consen 477 EREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSE-------QRQNEQELQNEQAATFGASEPLYNILA 549 (583)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHH-------HHHhHHHHHhhhhcccccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039206 190 SIRAMIEACTEKLEAIEESYDAVKAKLESE 219 (645)
Q Consensus 190 el~~eIE~~e~ei~e~~e~ie~le~eIee~ 219 (645)
.++..|.+..+.|...+.+|=.+++.|..+
T Consensus 550 ~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 550 NLQKEINDTKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 451
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.58 E-value=4.4e+02 Score=21.74 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS 283 (645)
Q Consensus 222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~ 283 (645)
++..+..++..+-.....++.+-..+..+......+...+....+.....++.+..++..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
No 452
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.39 E-value=1.2e+03 Score=26.86 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------
Q 039206 122 LGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA------------ 189 (645)
Q Consensus 122 l~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeie------------ 189 (645)
+..-....+-+...+..-.++|..++.+-+++. +..++..+ .++.--.+++.+++++.
T Consensus 297 l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~--------LEaQL~kI--KLEKEnkRiadLekevak~~v~~s~~e~~ 366 (518)
T PF10212_consen 297 LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWM--------LEAQLAKI--KLEKENKRIADLEKEVAKGQVAESSQESS 366 (518)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHHHHHHHHHHhccccccchhhhh
Q ss_pred -----------------------------------HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 190 -----------------------------------SIRAMIEACTEK-LEAIEESYDAVKAKLESEKRELELTQTFMKDL 233 (645)
Q Consensus 190 -----------------------------------el~~eIE~~e~e-i~e~~e~ie~le~eIee~e~ELeel~~~i~el 233 (645)
....+.+..++. ..=...+++++-..+.............-..+
T Consensus 367 ~l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL 446 (518)
T PF10212_consen 367 VLSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRAL 446 (518)
T ss_pred hhcccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 039206 234 LVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCS 304 (645)
Q Consensus 234 e~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~ 304 (645)
...+.....++..+..++..+...+..+++++..-.+..+ ..+...+.-+..+..++..-+++|..++
T Consensus 447 ~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 447 QKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 453
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.23 E-value=7.9e+02 Score=24.52 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHH
Q 039206 77 SIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVK 147 (645)
Q Consensus 77 ~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le 147 (645)
++.++.+...+.++..........+..+...++.....++..++.-+++..++.-..+.+..+..++..++
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 454
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=22.17 E-value=8.6e+02 Score=26.42 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 213 KAKLESEKR-ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKEN 291 (645)
Q Consensus 213 e~eIee~e~-ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~ 291 (645)
++.+.+... .+.+++.++...=--.+.|.++...+.=++..++..++++..++..--++...+.+.+++..--+.-+..
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHhhhhhchhhh
Q 039206 292 QLKSVLACIEDCSKEDQ 308 (645)
Q Consensus 292 el~~~~~~i~~~~~e~~ 308 (645)
+..++++.|.-.+.-++
T Consensus 190 ~~~elKe~l~QRdelie 206 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIE 206 (405)
T ss_pred HHHHHHHHHHHHHHHHH
No 455
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.15 E-value=2.1e+02 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhh
Q 039206 112 NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSA 150 (645)
Q Consensus 112 ~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei 150 (645)
+.+.+.++.||.+++.+|.-+..-|..+++...+|.+.+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 456
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.15 E-value=1.2e+03 Score=26.78 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039206 216 LESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE-KELELKEREFCRIQERIEESSQELLLKENQLK 294 (645)
Q Consensus 216 Iee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~-~ele~le~E~~~l~~~le~~~~ei~e~e~el~ 294 (645)
|...-..+.+++.++..+..+-+.++.+-+.+++.-..+...+...- .+..++..+.+.+..........+..+..++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 039206 295 S 295 (645)
Q Consensus 295 ~ 295 (645)
.
T Consensus 141 ~ 141 (472)
T TIGR03752 141 G 141 (472)
T ss_pred h
No 457
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=21.98 E-value=8.1e+02 Score=26.60 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHH
Q 039206 234 LVKLRLYED-NLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEK 312 (645)
Q Consensus 234 e~El~~lr~-e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~ 312 (645)
+.-+.++++ ...++++.|....=--..+.++.+.+.=+++.|.+-+..+...+.+-..+-.+.-++++-.+.-.+....
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHhhHHHHHHHHHH
Q 039206 313 ELISVGKSIRQFEERVRE 330 (645)
Q Consensus 313 el~~v~~~i~~le~~~~e 330 (645)
....++..|++-+.-+.+
T Consensus 190 ~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
No 458
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=21.78 E-value=13 Score=37.01 Aligned_cols=48 Identities=27% Similarity=0.280 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHh
Q 039206 478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRR 525 (645)
Q Consensus 478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~ 525 (645)
++|+.++-+++|++.+..|++.|.+=.||+..-+|...+.+-+.-|..
T Consensus 138 SgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~ 185 (220)
T PF02463_consen 138 SGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKE 185 (220)
T ss_dssp -HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
No 459
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.72 E-value=3.1e+02 Score=25.82 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 76 SSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRI 129 (645)
Q Consensus 76 ~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i 129 (645)
...++......+...+.-...+++++..+..+|..++.++.+....-..+.++|
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 460
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=21.64 E-value=8.1e+02 Score=24.43 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 174 VRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRL 253 (645)
Q Consensus 174 I~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~ 253 (645)
++.++..+...+.-+.+....+...+........-.......+..+..-+...+..+..++.-..+.+.++.+...-+..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 254 RENELECKEKELELKEREFCRIQERIEE 281 (645)
Q Consensus 254 ~~~ele~~~~ele~le~E~~~l~~~le~ 281 (645)
.+++.+.+...+.....+++........
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=21.21 E-value=1.1e+02 Score=36.22 Aligned_cols=290 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHhhhcchHhhhhhH-------------------------------HHHH-HHHHHHHHHhhhhhcCCchHhHHHHH
Q 039206 37 KETLRRSFDLPHEQLGLF-------------------------------TAQW-IQELFDLTMKSLEKQSSSSIDVDMKI 84 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-------------------------------~~~~-~e~~~~~~r~~~~~~~~~~~~v~~~~ 84 (645)
++.+...|.....++..| .... +-..+..++..++ .+.++...-.
T Consensus 28 ~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le---~l~~~~~eR~ 104 (619)
T PF03999_consen 28 KARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLE---ELRKEKEERM 104 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHH
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKE--KELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKE 162 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~--~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~e 162 (645)
.++.++...++.+-.+|...-..+....-+-..+- .+|+.++..|..+..+....-..+..+...|...-..|...|.
T Consensus 105 ~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~ 184 (619)
T PF03999_consen 105 QEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPE 184 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q ss_pred HHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HH
Q 039206 163 KQKRLESLDG------EVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELT--------QT 228 (645)
Q Consensus 163 l~~~ieei~~------eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel--------~~ 228 (645)
.+.--..+.. ...-....|+.+..-++.+..+......++..+...+..+=..++.-..+.... ..
T Consensus 185 ~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~ 264 (619)
T PF03999_consen 185 RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLD 264 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHhhhhhch
Q 039206 229 FMKDLLVKLRLYEDNLQSLQSTV-RLRENELECKEKELELKEREFCRIQERIEESSQE--LLLKENQLKSVLACIEDCSK 305 (645)
Q Consensus 229 ~i~ele~El~~lr~e~e~l~eel-~~~~~ele~~~~ele~le~E~~~l~~~le~~~~e--i~e~e~el~~~~~~i~~~~~ 305 (645)
-+..+..|+..++.-.......+ ..++.++..+-....--..+.............+ +...+.+|..++..+...+.
T Consensus 265 ~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~ 344 (619)
T PF03999_consen 265 TIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKP 344 (619)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhHHHHHhhHHHHHHHHHH
Q 039206 306 EDQVKEKELISVGKSIRQFEERVRE 330 (645)
Q Consensus 306 e~~~ke~el~~v~~~i~~le~~~~e 330 (645)
=++..+ ....+-.....++..-.|
T Consensus 345 Il~~v~-k~~~l~~~~~~Le~~~~D 368 (619)
T PF03999_consen 345 ILELVE-KWESLWEEMEELEESSKD 368 (619)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhcC
No 462
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.88 E-value=6.1e+02 Score=22.68 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=0.0
Q ss_pred HhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHH-------------------------
Q 039206 129 IGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVL------------------------- 183 (645)
Q Consensus 129 i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~------------------------- 183 (645)
+......+..+..+++.+...+..... ...++......|..+.+....
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~-------~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v 73 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEA-------QLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLV 73 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEE
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 184 -----------MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELT 226 (645)
Q Consensus 184 -----------~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel 226 (645)
.+.-++-+...++.++..+..+...+..+...+...+..+..+
T Consensus 74 ~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 74 DLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 463
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=4.8e+02 Score=27.28 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH
Q 039206 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST-VRLRENELECKEKELELKER 270 (645)
Q Consensus 201 ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee-l~~~~~ele~~~~ele~le~ 270 (645)
.|..++++|..++..+..+-..+-+...++.++... .+.+.+++..-.+ +.++.++.++.-+.+..+..
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 464
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.81 E-value=8.1e+02 Score=24.08 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 177 SEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 177 ~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~ 242 (645)
+..+++.++.+.+.+...|+.++..++.+...+.+. ++=..+.|++++-.++..++..++.+..
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 465
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.80 E-value=5.5e+02 Score=23.17 Aligned_cols=50 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039206 221 RELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKER 270 (645)
Q Consensus 221 ~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~ 270 (645)
..+..++..+..+..++..++..+..+.++-..++-+-..++..+.....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 466
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.75 E-value=1.3e+03 Score=26.46 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL 267 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~ 267 (645)
+.........+...-..+. +......+.+....++...+.....+..++..++.+++............++..+.++..
T Consensus 35 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~ 113 (475)
T PRK10361 35 LAEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSE 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhH-HhhHHHHHHHh
Q 039206 268 KEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRE-REFDSLRKAVE 346 (645)
Q Consensus 268 le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n-~e~~~~~~~~~ 346 (645)
-=..+.. +-++..+..+.+... ...+.=+.-+.+++..+..++.+++... +++-.+...+
T Consensus 114 ~F~~LA~--~ile~k~~~f~~~~~----------------~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi- 174 (475)
T PRK10361 114 QFENLAN--RIFEHSNRRVDEQNR----------------QSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEI- 174 (475)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHH----------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhhHHHhHHhh
Q 039206 347 DSSKNLELRQKKL 359 (645)
Q Consensus 347 ~~~~el~~k~~~l 359 (645)
+.|..--.++
T Consensus 175 ---~~L~~~n~~i 184 (475)
T PRK10361 175 ---RNLQQLNAQM 184 (475)
T ss_pred ---HHHHHHHHHH
No 467
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.32 E-value=5e+02 Score=22.07 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206 170 LDGEVRESEKELVLMKEQKASIRAMIEA---CTEKLEAIEESYDAVKAKLESEKREL 223 (645)
Q Consensus 170 i~~eI~~~e~~ie~~ekeieel~~eIE~---~e~ei~e~~e~ie~le~eIee~e~EL 223 (645)
|+..|..+..+...+...++.++..+.. +..++..+..++..+...+.+...-|
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.32 E-value=1.3e+03 Score=26.54 Aligned_cols=118 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhhHHH------hHHHHhH--------HHHHhhhcchHhhhhhHHHHH---HHHHHHHHHhhhhhcCCchHhHHHHHHHH
Q 039206 25 LVLVEL------RVAELKK--------ETLRRSFDLPHEQLGLFTAQW---IQELFDLTMKSLEKQSSSSIDVDMKIRLL 87 (645)
Q Consensus 25 ~~~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ 87 (645)
+.|-|| |+.+++. .-|...-+.++..-..-...| ++.-+..+.+... --=-.|.+-.+-+
T Consensus 358 deL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~Lt~~~~---~~L~~Ik~SprYv 434 (507)
T PF05600_consen 358 DELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEIISQLTNPRT---QHLFMIKSSPRYV 434 (507)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHhcCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206 88 DERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNL 145 (645)
Q Consensus 88 ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~ 145 (645)
+++...+..+..-.......+..+...+.+...++..++-.++.+...-.++++.++.
T Consensus 435 drl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 435 DRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 469
>PHA01750 hypothetical protein
Probab=20.30 E-value=2.1e+02 Score=23.66 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHH---HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHH
Q 039206 53 LFTAQW---IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENK 97 (645)
Q Consensus 53 ~~~~~~---~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~ 97 (645)
++...+ +..++++++.+++ +....+..+++++.++.+....+
T Consensus 31 ~lkdAvkeIV~~ELdNL~~ei~---~~kikqDnl~~qv~eik~k~dk~ 75 (75)
T PHA01750 31 ALKDAVKEIVNSELDNLKTEIE---ELKIKQDELSRQVEEIKRKLDKK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHhhccC
No 470
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.23 E-value=8.5e+02 Score=24.11 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=0.0
Q ss_pred hhhcchHhhhhhHHHHH---HHHHHHHHHhhhhhcCCchHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 42 RSFDLPHEQLGLFTAQW---IQELFDLTMKSLEKQSSSSIDVDMKIRL----LDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 42 ~~~~~~~~~~~~~~~~~---~e~~~~~~r~~~~~~~~~~~~v~~~~~~----~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
|+++--=.+|+.|-..+ +..-|+....-.. ++-.-..++..+ ..++..++..++.++..++..+.++...
T Consensus 73 RQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~---s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 73 RQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYE---SSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 115 LACKEKELGF-VRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 115 ~~~~~~el~~-l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
.+..+...+. ..........++..++.....+...|+.
T Consensus 150 ~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 150 CEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 471
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=20.14 E-value=1.8e+02 Score=24.29 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcCC-------------------CCChhhHHHHHHHHHHHHHhcc
Q 039206 442 TCILLLEQLSSLAP-------------------EINSQVQGEALKVAVEWKKNME 477 (645)
Q Consensus 442 ~cillLE~L~~~~p-------------------~i~~~vke~A~~lA~~WK~~i~ 477 (645)
.|+-+|..|..+++ ..+|.++..|+.|-..||..+.
T Consensus 22 ~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk~~v~ 76 (76)
T cd00183 22 RLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD 76 (76)
T ss_pred HHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
No 472
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.01 E-value=1.7e+03 Score=27.45 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039206 54 FTAQW-IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVC 132 (645)
Q Consensus 54 ~~~~~-~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~ 132 (645)
.+.+. -+.++-++..... .-+......-++-...+-.++.++.-++--+..-..+..-...+-....-.|++.
T Consensus 854 it~ee~eqkElLele~E~e------gkldglieakeaeenkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeK 927 (1424)
T KOG4572|consen 854 ITKEEGEQKELLELELENE------GKLDGLIEAKEAEENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEK 927 (1424)
T ss_pred HHHHhhhhHHHHHHhhhcc------cccchHHHHHHHHhhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHhhHHHHHHHHHHhhhhch----hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 039206 133 NSELQSKEDELNLVKNSAEKWP----KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEA--IE 206 (645)
Q Consensus 133 ~~el~~le~eL~~le~ei~~~~----~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e--~~ 206 (645)
..+|.+++.-++.-+-.++.-. +-.+.++.|+.+|.+- ++++-.++.+-+..+-+.+.. .-
T Consensus 928 Dqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~dae-------------Le~~~ael~eleqk~le~~eDea~a 994 (1424)
T KOG4572|consen 928 DQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAE-------------LEKEFAELIELEQKALECKEDEAFA 994 (1424)
T ss_pred hHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQEL 286 (645)
Q Consensus 207 e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei 286 (645)
......+.++...+.+++++.+....+.+++.++..++ +...++++...+-..-..-+....+..++
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI-------------iQekE~el~e~efka~d~Sd~r~kie~ef 1061 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI-------------IQEKEGELIEDEFKALDESDPRAKIEDEF 1061 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH-------------HhcccchHHHHHhhhccccCcchhHHHHH
Q ss_pred HHHHHhHHHHHHhhhhhchhhhH-----HHHhHHHHHhhHHHHHHHHHH
Q 039206 287 LLKENQLKSVLACIEDCSKEDQV-----KEKELISVGKSIRQFEERVRE 330 (645)
Q Consensus 287 ~e~e~el~~~~~~i~~~~~e~~~-----ke~el~~v~~~i~~le~~~~e 330 (645)
.-++++..+.+....+-...... ++.+++.+..+|+++-..+.+
T Consensus 1062 Aa~eaemdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1062 AAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Done!