Query 039206
Match_columns 645
No_of_seqs 278 out of 362
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.4 1.6E-08 5.3E-13 101.3 41.8 71 78-148 13-83 (284)
2 1i84_S Smooth muscle myosin he 99.2 2.8E-11 9.4E-16 147.9 8.3 20 316-335 1148-1167(1184)
3 1i84_S Smooth muscle myosin he 99.1 8.9E-11 3E-15 143.5 9.2 14 43-56 858-871 (1184)
4 3na7_A HP0958; flagellar bioge 98.3 0.00012 3.9E-09 74.6 22.9 171 167-345 13-188 (256)
5 3na7_A HP0958; flagellar bioge 98.1 0.00048 1.6E-08 70.1 23.7 7 409-415 226-232 (256)
6 3vkg_A Dynein heavy chain, cyt 97.3 0.087 3E-06 69.7 31.8 62 91-152 1905-1966(3245)
7 2efr_A General control protein 97.3 0.11 3.6E-06 48.6 24.5 124 170-293 26-149 (155)
8 2efr_A General control protein 97.2 0.16 5.4E-06 47.5 23.9 79 162-240 74-152 (155)
9 3vkg_A Dynein heavy chain, cyt 97.0 0.24 8.3E-06 65.6 30.8 67 217-283 2031-2097(3245)
10 3o0z_A RHO-associated protein 96.8 0.31 1.1E-05 45.9 21.5 71 180-250 7-77 (168)
11 2v71_A Nuclear distribution pr 96.6 0.47 1.6E-05 45.7 21.8 11 105-115 30-40 (189)
12 2v71_A Nuclear distribution pr 96.6 0.57 2E-05 45.0 22.2 37 76-112 8-44 (189)
13 3o0z_A RHO-associated protein 96.4 0.68 2.3E-05 43.6 21.2 65 191-255 11-75 (168)
14 2dfs_A Myosin-5A; myosin-V, in 95.8 0.28 9.4E-06 59.4 19.6 57 164-220 990-1050(1080)
15 2dfs_A Myosin-5A; myosin-V, in 95.8 0.42 1.4E-05 57.8 21.1 28 227-254 1022-1049(1080)
16 3ol1_A Vimentin; structural ge 95.5 0.58 2E-05 41.7 15.8 67 184-250 18-84 (119)
17 3u1c_A Tropomyosin alpha-1 cha 95.4 0.71 2.4E-05 40.0 15.4 53 220-279 43-95 (101)
18 4gkw_A Spindle assembly abnorm 95.1 1.7 5.8E-05 38.9 21.8 58 278-345 99-156 (167)
19 3u59_A Tropomyosin beta chain; 94.9 0.93 3.2E-05 39.1 14.9 47 233-279 49-95 (101)
20 3u59_A Tropomyosin beta chain; 94.5 1.7 5.9E-05 37.4 15.5 55 220-274 43-97 (101)
21 4gkw_A Spindle assembly abnorm 94.1 3.1 0.0001 37.3 20.7 45 97-141 9-53 (167)
22 3swk_A Vimentin; cytoskeleton, 93.9 0.84 2.9E-05 38.3 11.9 63 188-250 2-64 (86)
23 2b9c_A Striated-muscle alpha t 93.8 1.3 4.3E-05 41.0 13.9 43 208-250 53-95 (147)
24 2ocy_A RAB guanine nucleotide 93.6 4.6 0.00016 37.5 18.7 45 108-152 46-90 (154)
25 2b9c_A Striated-muscle alpha t 92.8 2.3 8E-05 39.2 14.1 16 235-250 52-67 (147)
26 3tnu_B Keratin, type II cytosk 91.9 4.1 0.00014 36.6 14.3 25 188-212 38-62 (129)
27 3tnu_A Keratin, type I cytoske 91.5 3.3 0.00011 37.3 13.2 11 193-203 45-55 (131)
28 3hnw_A Uncharacterized protein 89.5 2.8 9.6E-05 38.3 10.9 9 59-67 66-74 (138)
29 1l8d_A DNA double-strand break 89.3 5.6 0.00019 34.4 12.5 35 114-148 11-45 (112)
30 2v4h_A NF-kappa-B essential mo 89.1 6.6 0.00023 34.2 12.1 35 188-222 26-60 (110)
31 2v4h_A NF-kappa-B essential mo 89.0 3.7 0.00013 35.8 10.6 79 63-144 26-107 (110)
32 3ol1_A Vimentin; structural ge 88.5 13 0.00043 32.9 16.6 84 165-248 20-103 (119)
33 2jee_A YIIU; FTSZ, septum, coi 88.0 9.7 0.00033 31.5 12.0 10 258-267 64-73 (81)
34 3swk_A Vimentin; cytoskeleton, 87.7 5.3 0.00018 33.4 10.6 77 163-246 5-81 (86)
35 3tnu_A Keratin, type I cytoske 86.9 7.8 0.00027 34.8 12.1 16 202-217 40-55 (131)
36 2eqb_B RAB guanine nucleotide 86.6 14 0.00047 31.6 12.5 54 101-154 7-60 (97)
37 3oja_A Leucine-rich immune mol 86.4 24 0.00083 38.1 18.2 14 138-151 385-398 (487)
38 2e7s_A RAB guanine nucleotide 86.4 3.3 0.00011 37.5 9.1 49 106-154 32-80 (135)
39 3ghg_A Fibrinogen alpha chain; 85.9 11 0.00037 41.3 14.3 16 377-392 204-219 (562)
40 2xzr_A Immunoglobulin-binding 84.9 17 0.00058 30.8 16.3 52 189-240 51-102 (114)
41 3oja_A Leucine-rich immune mol 84.1 23 0.0008 38.2 16.7 35 192-226 441-475 (487)
42 2ocy_A RAB guanine nucleotide 83.4 28 0.00097 32.2 20.0 14 319-332 129-142 (154)
43 2v66_B Nuclear distribution pr 82.7 24 0.00082 30.9 16.7 23 265-287 79-101 (111)
44 3jsv_C NF-kappa-B essential mo 82.0 10 0.00034 32.2 9.5 35 188-222 4-38 (94)
45 2xzr_A Immunoglobulin-binding 81.6 23 0.0008 29.9 17.3 76 201-276 28-103 (114)
46 2no2_A HIP-I, huntingtin-inter 79.5 30 0.001 30.0 14.7 81 61-148 2-82 (107)
47 3jsv_C NF-kappa-B essential mo 79.4 16 0.00056 30.9 10.0 31 169-199 6-36 (94)
48 2e7s_A RAB guanine nucleotide 76.8 4.6 0.00016 36.6 6.3 30 200-229 53-82 (135)
49 3qh9_A Liprin-beta-2; coiled-c 76.4 25 0.00086 28.9 9.9 61 90-150 17-77 (81)
50 1deq_A Fibrinogen (alpha chain 76.0 41 0.0014 35.4 14.0 19 310-328 139-157 (390)
51 3cvf_A Homer-3, homer protein 74.2 27 0.00091 28.7 9.7 24 227-250 26-49 (79)
52 3nmd_A CGMP dependent protein 73.8 11 0.00038 30.4 7.1 21 107-127 41-61 (72)
53 3qh9_A Liprin-beta-2; coiled-c 72.7 29 0.001 28.5 9.4 59 85-143 19-77 (81)
54 1m1j_B Fibrinogen beta chain; 72.6 1.1E+02 0.0038 33.2 17.1 7 370-376 240-246 (464)
55 2zqm_A Prefoldin beta subunit 70.0 49 0.0017 28.3 11.4 15 75-89 24-38 (117)
56 3a7p_A Autophagy protein 16; c 68.7 72 0.0025 29.3 14.5 56 216-271 70-125 (152)
57 2zqm_A Prefoldin beta subunit 67.8 58 0.002 27.9 12.7 27 161-187 73-99 (117)
58 3mq9_A Bone marrow stromal ant 66.5 1.4E+02 0.0048 31.8 16.6 13 229-241 405-417 (471)
59 1x8y_A Lamin A/C; structural p 65.8 40 0.0014 27.9 9.3 21 227-247 34-54 (86)
60 3mq9_A Bone marrow stromal ant 63.0 1.6E+02 0.0055 31.3 17.3 79 59-144 357-435 (471)
61 2lw1_A ABC transporter ATP-bin 62.7 35 0.0012 28.3 8.4 23 211-233 60-82 (89)
62 3htk_A Structural maintenance 62.0 49 0.0017 25.0 8.7 44 80-123 7-50 (60)
63 1fxk_A Prefoldin; archaeal pro 59.5 78 0.0027 26.6 12.1 28 161-188 68-95 (107)
64 1gk4_A Vimentin; intermediate 59.5 72 0.0025 26.1 12.0 16 229-244 34-49 (84)
65 2i1j_A Moesin; FERM, coiled-co 59.1 12 0.0004 42.1 6.3 13 59-71 285-297 (575)
66 1x8y_A Lamin A/C; structural p 58.7 77 0.0026 26.2 10.3 49 196-244 31-79 (86)
67 2lw1_A ABC transporter ATP-bin 53.5 54 0.0019 27.1 8.1 22 86-107 23-44 (89)
68 1m1j_A Fibrinogen alpha subuni 50.6 2.7E+02 0.0092 30.1 14.8 7 413-419 241-247 (491)
69 2i1j_A Moesin; FERM, coiled-co 50.2 1.1E+02 0.0036 34.2 12.3 6 361-366 567-572 (575)
70 1go4_E MAD1 (mitotic arrest de 49.7 77 0.0026 27.1 8.4 30 79-108 13-42 (100)
71 3s4r_A Vimentin; alpha-helix, 48.7 1.2E+02 0.0041 25.4 13.4 31 188-218 11-41 (93)
72 1wle_A Seryl-tRNA synthetase; 47.5 1.1E+02 0.0037 33.6 11.5 15 578-592 442-456 (501)
73 2b5u_A Colicin E3; high resolu 47.2 3.2E+02 0.011 29.9 20.5 138 162-299 295-452 (551)
74 3efg_A Protein SLYX homolog; x 46.2 54 0.0019 26.7 6.7 39 93-131 15-53 (78)
75 3mq7_A Bone marrow stromal ant 44.4 1.6E+02 0.0056 25.7 12.4 31 265-295 73-103 (121)
76 3qne_A Seryl-tRNA synthetase, 44.3 67 0.0023 35.2 9.1 30 49-81 33-64 (485)
77 2pms_C Pneumococcal surface pr 44.3 1.3E+02 0.0043 26.8 9.2 34 213-250 50-83 (125)
78 1gd2_E Transcription factor PA 43.9 41 0.0014 26.9 5.5 42 95-136 25-66 (70)
79 2dq0_A Seryl-tRNA synthetase; 43.9 1.2E+02 0.0041 32.8 11.1 38 267-304 73-110 (455)
80 1gk4_A Vimentin; intermediate 42.4 1.4E+02 0.0048 24.4 12.5 47 196-242 29-75 (84)
81 2a01_A Apolipoprotein A-I; fou 42.4 2.3E+02 0.0078 27.7 12.1 12 26-37 29-40 (243)
82 2pms_C Pneumococcal surface pr 42.1 1.3E+02 0.0044 26.7 8.9 19 226-244 66-84 (125)
83 2a01_A Apolipoprotein A-I; fou 41.1 2.6E+02 0.009 27.2 16.7 16 140-155 131-146 (243)
84 3lss_A Seryl-tRNA synthetase; 41.0 94 0.0032 34.0 9.7 44 37-83 23-70 (484)
85 3uux_B Mitochondrial division 39.9 2E+02 0.0069 28.3 10.8 75 80-154 151-225 (242)
86 2dq0_A Seryl-tRNA synthetase; 39.7 82 0.0028 34.1 9.0 30 49-81 31-62 (455)
87 1ses_A Seryl-tRNA synthetase; 39.4 78 0.0027 33.9 8.7 32 271-302 72-103 (421)
88 1m1j_C Fibrinogen gamma chain; 38.9 3.8E+02 0.013 28.5 14.5 9 409-417 241-249 (409)
89 2l5g_B Putative uncharacterize 36.3 70 0.0024 23.0 5.0 27 161-187 5-31 (42)
90 3he5_A Synzip1; heterodimeric 35.8 1.2E+02 0.004 21.6 6.9 39 113-151 10-48 (49)
91 2lem_A Apolipoprotein A-I; lip 35.5 2.5E+02 0.0085 26.9 10.9 35 24-58 26-63 (216)
92 3mov_A Lamin-B1; LMNB1, B-type 35.3 2E+02 0.0069 24.2 9.0 8 233-240 77-84 (95)
93 1wle_A Seryl-tRNA synthetase; 34.8 2.1E+02 0.0072 31.3 11.3 30 49-81 70-101 (501)
94 3qne_A Seryl-tRNA synthetase, 34.2 1.6E+02 0.0055 32.1 10.1 34 270-303 78-111 (485)
95 1fxk_C Protein (prefoldin); ar 34.1 2.4E+02 0.0081 24.6 12.4 26 107-132 9-34 (133)
96 2w83_C C-JUN-amino-terminal ki 33.9 1.9E+02 0.0065 23.4 9.4 39 258-296 18-56 (77)
97 1ses_A Seryl-tRNA synthetase; 33.6 90 0.0031 33.4 8.0 30 49-81 28-59 (421)
98 3r2p_A Apolipoprotein A-I; amp 33.5 3E+02 0.01 25.6 13.1 34 25-58 29-65 (185)
99 1d7m_A Cortexillin I; coiled-c 32.1 2.2E+02 0.0076 23.7 15.0 16 235-250 4-19 (101)
100 3uux_B Mitochondrial division 31.4 3.3E+02 0.011 26.8 10.8 68 79-146 157-224 (242)
101 3a7o_A Autophagy protein 16; c 31.4 2E+02 0.0068 22.9 8.6 40 240-279 30-69 (75)
102 4emc_A Monopolin complex subun 31.1 2.7E+02 0.0093 26.4 9.7 9 288-296 76-84 (190)
103 4etp_A Kinesin-like protein KA 30.6 1.3E+02 0.0043 32.1 8.4 16 503-518 244-259 (403)
104 3trt_A Vimentin; cytoskeleton, 30.1 2E+02 0.007 22.7 10.4 38 236-273 36-73 (77)
105 3l4q_C Phosphatidylinositol 3- 29.6 3.5E+02 0.012 25.2 17.8 45 224-268 13-57 (170)
106 1cii_A Colicin IA; bacteriocin 29.2 5.8E+02 0.02 27.6 22.2 50 223-272 358-407 (602)
107 4etp_A Kinesin-like protein KA 28.8 1.4E+02 0.0048 31.7 8.5 9 414-422 132-140 (403)
108 2k48_A Nucleoprotein; viral pr 27.9 2.9E+02 0.0099 23.7 9.7 70 162-240 32-101 (107)
109 2l5g_B Putative uncharacterize 26.8 1.1E+02 0.0037 22.0 4.6 18 127-144 16-33 (42)
110 4dnd_A Syntaxin-10, SYN10; str 26.3 3.4E+02 0.012 24.0 11.8 84 63-152 29-130 (130)
111 1m1j_A Fibrinogen alpha subuni 25.8 6.5E+02 0.022 27.1 16.4 20 274-293 136-155 (491)
112 3lss_A Seryl-tRNA synthetase; 25.6 3.1E+02 0.011 29.9 10.5 31 273-303 114-144 (484)
113 2xdj_A Uncharacterized protein 25.6 2.8E+02 0.0095 22.7 9.7 38 108-145 22-59 (83)
114 2nrj_A HBL B protein; enteroto 24.7 5.9E+02 0.02 26.2 13.5 195 37-244 118-334 (346)
115 1zxa_A CGMP-dependent protein 24.4 1E+02 0.0034 24.5 4.6 24 101-124 27-50 (67)
116 2c5k_T Syntaxin TLG1, T-snare 23.8 1.1E+02 0.0036 25.9 5.0 17 130-146 71-87 (95)
117 3c9i_A Tail needle protein GP2 23.2 5E+02 0.017 24.9 12.8 31 220-250 104-134 (242)
118 2zdi_C Prefoldin subunit alpha 21.3 3.9E+02 0.013 23.8 8.9 7 178-184 104-110 (151)
119 3u06_A Protein claret segregat 21.0 2.4E+02 0.0083 30.0 8.5 22 224-245 13-34 (412)
120 3vp9_A General transcriptional 20.6 1.4E+02 0.0048 25.1 5.1 32 211-242 40-71 (92)
121 3ghg_B Fibrinogen beta chain; 20.0 8.4E+02 0.029 26.3 14.2 6 370-375 235-240 (461)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.39 E-value=1.6e-08 Score=101.28 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.++..+...++++...+..+...+...+..+..+...+......+..+...+......+..+...+..++.
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.16 E-value=2.8e-11 Score=147.93 Aligned_cols=20 Identities=0% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHhhhhH
Q 039206 316 SVGKSIRQFEERVREFELRE 335 (645)
Q Consensus 316 ~v~~~i~~le~~~~eLE~~n 335 (645)
.+...+..+...+++++++|
T Consensus 1148 ~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S 1148 DLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 34444444444444444444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.10 E-value=8.9e-11 Score=143.46 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=5.2
Q ss_pred hhcchHhhhhhHHH
Q 039206 43 SFDLPHEQLGLFTA 56 (645)
Q Consensus 43 ~~~~~~~~~~~~~~ 56 (645)
++..+..++..+..
T Consensus 858 El~~L~~eL~el~~ 871 (1184)
T 1i84_S 858 EMQAKDEELQRTKE 871 (1184)
T ss_dssp HCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.28 E-value=0.00012 Score=74.65 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=99.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246 (645)
Q Consensus 167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~ 246 (645)
+..+..+|.++...+..++.+++.+..++..+...+......+..+..++...+.++...+.++......+...+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----- 87 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----- 87 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----
Confidence 455556666666666666666666666666666666666666666666666666666666666666666554432
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHH
Q 039206 247 LQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326 (645)
Q Consensus 247 l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~ 326 (645)
..+++..+.++++....++..++.++..+...++.....+......+...+..+.....+++. .+.++...+..+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~---~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN---EVKNIKETQQIIFK 164 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 233455555556666666666666666666666666666666666665555555444444443 23344444455555
Q ss_pred HHHHhhhhH-----HhhHHHHHHH
Q 039206 327 RVREFELRE-----REFDSLRKAV 345 (645)
Q Consensus 327 ~~~eLE~~n-----~e~~~~~~~~ 345 (645)
+...+.+.- ..|+.+..+.
T Consensus 165 ~r~~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 165 KKEDLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Confidence 554444332 6666665543
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.13 E-value=0.00048 Score=70.07 Aligned_cols=7 Identities=0% Similarity=-0.126 Sum_probs=2.6
Q ss_pred CCchhhH
Q 039206 409 ADPALLV 415 (645)
Q Consensus 409 ~dPa~LV 415 (645)
|+=++++
T Consensus 226 p~CgRIL 232 (256)
T 3na7_A 226 PYCGRIL 232 (256)
T ss_dssp TTTCCEE
T ss_pred CCCCeeE
Confidence 3333333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.34 E-value=0.087 Score=69.70 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 91 AKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 91 ~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
..-...+..++......+..--..+.+.....+.++.++...+.+++.+.++-+.+-.+|..
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555555555555555555555555555554444443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.33 E-value=0.11 Score=48.64 Aligned_cols=124 Identities=16% Similarity=0.259 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 170 LDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS 249 (645)
Q Consensus 170 i~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~e 249 (645)
+.+++.+.+.+.+..+..+.++..++....+.+..+...-......-+..+.++..+..++++.+............+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666555544444444555555555555555555555555555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 250 TVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL 293 (645)
Q Consensus 250 el~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el 293 (645)
++..+..++...+.....+..+++.....+..+...+-.++.++
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 54444444444444444444444444333333334444444433
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.17 E-value=0.16 Score=47.49 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 162 EKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 162 el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
....+|..+...+...+.+.+.+++.+..++..|+.++.++...+..+..+..+++.--.++..+......+.+++..+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3556666677777777777777777777777777777777777777666666666655555555555555555554443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.00 E-value=0.24 Score=65.64 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS 283 (645)
Q Consensus 217 ee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~ 283 (645)
...+.++.+++.++..+..+++.+..+.+.++.+++.++..++...+=++.+..|..+....+..+.
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444444444444444443333
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.77 E-value=0.31 Score=45.89 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 180 ELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 180 ~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+|..++++++++.+.+..-.+.-..+++...++...+...+..+.+++.+...+...-..++.++..++..
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555554444444444444444444444444444444444
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.59 E-value=0.47 Score=45.67 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 039206 105 EKKIKDCNFEL 115 (645)
Q Consensus 105 e~~lee~~~e~ 115 (645)
+.++.++...=
T Consensus 30 e~El~EFqesS 40 (189)
T 2v71_A 30 RDELVEFQEGS 40 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.56 E-value=0.57 Score=45.05 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=17.2
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 76 SSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCN 112 (645)
Q Consensus 76 ~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~ 112 (645)
...+|.-+.....+....+..++.++.+-...=.+++
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555455555555555544444443333333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.37 E-value=0.68 Score=43.57 Aligned_cols=65 Identities=8% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE 255 (645)
Q Consensus 191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~ 255 (645)
++..++++...+..-.+...-+++...+....+........++...+..++..+..+.+++..++
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444444444444444444444444444444444444444433333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.81 E-value=0.28 Score=59.36 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206 164 QKRLESLDGEVRESEKELVLMKEQKA----SIRAMIEACTEKLEAIEESYDAVKAKLESEK 220 (645)
Q Consensus 164 ~~~ieei~~eI~~~e~~ie~~ekeie----el~~eIE~~e~ei~e~~e~ie~le~eIee~e 220 (645)
+.++++++.++.++.+....++..++ ++++.+..++.++..++.+.++++..+...+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333322 3334444444444444444444444443333
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.80 E-value=0.42 Score=57.77 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206 227 QTFMKDLLVKLRLYEDNLQSLQSTVRLR 254 (645)
Q Consensus 227 ~~~i~ele~El~~lr~e~e~l~eel~~~ 254 (645)
+.++..+.++...++.+++++...+...
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555433333
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.51 E-value=0.58 Score=41.74 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
.+.+|.+++..|+.+..+...+..+++.+...+++.+...+.-...-..++++|..++..++..--.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 3455666777777777777777777777777777777776665555566666666666666554444
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.37 E-value=0.71 Score=39.95 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
+.++.+++.++..++.++..+...+...... ++...+.....+.++..+..++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k-------Lee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDS-------LLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333 4444444444444444443333
No 18
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.15 E-value=1.7 Score=38.90 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206 278 RIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAV 345 (645)
Q Consensus 278 ~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~ 345 (645)
.++.+.+.+.++.+=+.++-..|.-+.++++... =++.+-|..||.-.-+-+.+++++
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEk----------lK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEK----------LKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhHhHHHHH
Confidence 3444445555555555555444444444444322 234444666665444444444444
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.94 E-value=0.93 Score=39.13 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 233 le~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
+...+..++++++.....+..+...++...+.....+.++..|..++
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.49 E-value=1.7 Score=37.41 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCR 274 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~ 274 (645)
..++..++.++..++.++..+...+......+....+.......++..+.+.+.-
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444455555555555555543
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.12 E-value=3.1 Score=37.26 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHH
Q 039206 97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKED 141 (645)
Q Consensus 97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~ 141 (645)
++..|.+++.+++.+..+.++...+++-+-+-+.+-.+++..+.+
T Consensus 9 K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqK 53 (167)
T 4gkw_A 9 KEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQK 53 (167)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334455555555555555555555555555555555444444443
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=93.93 E-value=0.84 Score=38.34 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
|.+++.+|+.+......+..+++++...++..+..++.-...-..++++|..++..++..--.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~ 64 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA 64 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456777778888888888888888888888888887777777777788888887777766655
No 23
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.76 E-value=1.3 Score=41.02 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 208 SYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 208 ~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
++..++.++.+.+...+.-..++.++..++..+...++.....
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR 95 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444444444444444444444444444444443333
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.61 E-value=4.6 Score=37.51 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 108 IKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 108 lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
+..+..+...+..++..+...+.+-.......+.....++.++++
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554444444444444444444444
No 25
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.85 E-value=2.3 Score=39.24 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 039206 235 VKLRLYEDNLQSLQST 250 (645)
Q Consensus 235 ~El~~lr~e~e~l~ee 250 (645)
..+..+..++...+..
T Consensus 52 Er~~~lE~qLkeak~~ 67 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHI 67 (147)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.89 E-value=4.1 Score=36.59 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAV 212 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~l 212 (645)
|.+++..|..+..++..++....++
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333333333
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.48 E-value=3.3 Score=37.34 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 039206 193 AMIEACTEKLE 203 (645)
Q Consensus 193 ~eIE~~e~ei~ 203 (645)
..|..+..++.
T Consensus 45 r~iq~L~~el~ 55 (131)
T 3tnu_A 45 RTMQNLEIELQ 55 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.46 E-value=2.8 Score=38.28 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 039206 59 IQELFDLTM 67 (645)
Q Consensus 59 ~e~~~~~~r 67 (645)
+-+.++.++
T Consensus 66 iadEl~k~~ 74 (138)
T 3hnw_A 66 IADDYFKAK 74 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 29
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.32 E-value=5.6 Score=34.40 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206 114 ELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148 (645)
Q Consensus 114 e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ 148 (645)
.+..+..++..++..+.....++..+++.+..++.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444555555555555555555543
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.05 E-value=6.6 Score=34.21 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRE 222 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~E 222 (645)
++.+...+..+++.+......|+.++.++..++..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~ 60 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554443
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.04 E-value=3.7 Score=35.75 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhH
Q 039206 63 FDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKES---ELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSK 139 (645)
Q Consensus 63 ~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~---eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~l 139 (645)
++.+..+.. .+.+.+..+..+++++..++..... .|.-++...+-+..++..-+...+++.++++++...+..+
T Consensus 26 i~~L~~~L~---~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 26 LEDLRQQLQ---QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 444444444 4455555555566666555555555 4445555666666666666666666666665555555555
Q ss_pred HHHHH
Q 039206 140 EDELN 144 (645)
Q Consensus 140 e~eL~ 144 (645)
..++.
T Consensus 103 q~q~~ 107 (110)
T 2v4h_A 103 QREFN 107 (110)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44443
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.51 E-value=13 Score=32.94 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNL 244 (645)
Q Consensus 165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~ 244 (645)
..|..++..|..+...-..+.-+++.++..++++..+...-...+.+++.++...++.+....-.-.+++.++..+++++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333334444455555555555555555555555666666666666555555555555555555555
Q ss_pred HHHH
Q 039206 245 QSLQ 248 (645)
Q Consensus 245 e~l~ 248 (645)
.=++
T Consensus 100 ~FLK 103 (119)
T 3ol1_A 100 AFLK 103 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.02 E-value=9.7 Score=31.46 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 039206 258 LECKEKELEL 267 (645)
Q Consensus 258 le~~~~ele~ 267 (645)
......++..
T Consensus 64 ~~~wq~Rl~~ 73 (81)
T 2jee_A 64 QNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 34
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.74 E-value=5.3 Score=33.41 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=46.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~ 242 (645)
|.++|+.+..+-.++.-.+ +.++..++....+...-...+.+.+.++-..++.+....-.-.+++.++..+++
T Consensus 5 Lr~qi~~l~~e~~~l~~e~-------dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVER-------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444 444555666666666666666667777777777666666666666666666666
Q ss_pred HHHH
Q 039206 243 NLQS 246 (645)
Q Consensus 243 e~e~ 246 (645)
++.=
T Consensus 78 El~f 81 (86)
T 3swk_A 78 EIAF 81 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.93 E-value=7.8 Score=34.82 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHHHH
Q 039206 202 LEAIEESYDAVKAKLE 217 (645)
Q Consensus 202 i~e~~e~ie~le~eIe 217 (645)
+.+.+..+..+..+|+
T Consensus 40 i~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQ 55 (131)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.56 E-value=14 Score=31.60 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
++.++..|..++.+...++.++..+...+.+-.......+.....++.++++..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555556666655555555555555555555555555443
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.44 E-value=24 Score=38.09 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHhhh
Q 039206 138 SKEDELNLVKNSAE 151 (645)
Q Consensus 138 ~le~eL~~le~ei~ 151 (645)
+...++......++
T Consensus 385 ~~~~~~~~~~~~~e 398 (487)
T 3oja_A 385 ELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHTTSSC
T ss_pred hhhhhHHHhhchhh
Confidence 33333333333333
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.36 E-value=3.3 Score=37.54 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
..+..+...+..+..++..+...+.+-.......+.+...++.++++..
T Consensus 32 ~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 32 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666666555555555555555555555555433
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.92 E-value=11 Score=41.32 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=0.0
Q ss_pred hCChhHHHHHHHHhhh
Q 039206 377 TSSGRNLQILLNQHLR 392 (645)
Q Consensus 377 ~md~~~L~~~i~~~~k 392 (645)
.|..+.|-.+|-.+||
T Consensus 204 ~lKmrP~kD~Vp~~fK 219 (562)
T 3ghg_A 204 LIKMKPVPDLVPGNFK 219 (562)
T ss_dssp ----------------
T ss_pred hcccccccccCchhhh
Confidence 3444444444444444
No 40
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=84.88 E-value=17 Score=30.78 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
+.....+.....+++.+..+|.+.-.++.......+.+-.+..-++.+++.+
T Consensus 51 aanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 51 AANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444433
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.12 E-value=23 Score=38.23 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 192 RAMIEACTEKLEAIEESYDAVKAKLESEKRELELT 226 (645)
Q Consensus 192 ~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel 226 (645)
+.+++.+.++.+..+..+.++...|.+....+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33444444444444444444444444444444333
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.37 E-value=28 Score=32.18 Aligned_cols=14 Identities=0% Similarity=0.233 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHhh
Q 039206 319 KSIRQFEERVREFE 332 (645)
Q Consensus 319 ~~i~~le~~~~eLE 332 (645)
..+..++.++.+|.
T Consensus 129 ~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 129 TLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.71 E-value=24 Score=30.87 Aligned_cols=23 Identities=30% Similarity=0.122 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039206 265 LELKEREFCRIQERIEESSQELL 287 (645)
Q Consensus 265 le~le~E~~~l~~~le~~~~ei~ 287 (645)
+..++..++...++..=+..++.
T Consensus 79 LeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 79 LEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444443444443
No 44
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.99 E-value=10 Score=32.18 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRE 222 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~E 222 (645)
++.+...+..+++.+......|+.++..+...+..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~ 38 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666665555555533
No 45
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=81.56 E-value=23 Score=29.93 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276 (645)
Q Consensus 201 ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~ 276 (645)
.+.....++......|+.--..+......+.+-+..+...+.++.+.-++..++....+++-....-++.++.++.
T Consensus 28 aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 28 LIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333444444444444444444454555555555666666666666666655555555555555555555554443
No 46
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=79.47 E-value=30 Score=29.97 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH
Q 039206 61 ELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140 (645)
Q Consensus 61 ~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le 140 (645)
+|++-+|.- |+..+++..-...-++....+..++..+..+. .....+.......++.++.+|.....++..++
T Consensus 2 eHi~LLRK~----aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq 74 (107)
T 2no2_A 2 SHADLLRKN----AEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQ 74 (107)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777653 37788888877777777777777777777666 33444555566666667777777777776666
Q ss_pred HHHHHHHH
Q 039206 141 DELNLVKN 148 (645)
Q Consensus 141 ~eL~~le~ 148 (645)
..++....
T Consensus 75 ~~l~~~~~ 82 (107)
T 2no2_A 75 GSLETSAQ 82 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555444
No 47
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.39 E-value=16 Score=30.87 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 169 SLDGEVRESEKELVLMKEQKASIRAMIEACT 199 (645)
Q Consensus 169 ei~~eI~~~e~~ie~~ekeieel~~eIE~~e 199 (645)
.+...+..++.-+..+...|+.+++++....
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444445555445444555555444433
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.80 E-value=4.6 Score=36.59 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206 200 EKLEAIEESYDAVKAKLESEKRELELTQTF 229 (645)
Q Consensus 200 ~ei~e~~e~ie~le~eIee~e~ELeel~~~ 229 (645)
.++.+-...+...+......+.+++.+...
T Consensus 53 ~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 53 EDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444433
No 49
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=76.37 E-value=25 Score=28.87 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhh
Q 039206 90 RAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSA 150 (645)
Q Consensus 90 ~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei 150 (645)
....-+.+-.+|.+++-.+.+++.++-.++..+-....+|......+...+.++..+..++
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444445555555555555555555555555555545445555555555555544443
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.97 E-value=41 Score=35.41 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=8.0
Q ss_pred HHHhHHHHHhhHHHHHHHH
Q 039206 310 KEKELISVGKSIRQFEERV 328 (645)
Q Consensus 310 ke~el~~v~~~i~~le~~~ 328 (645)
.+..++.+..+|.+||..+
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.19 E-value=27 Score=28.73 Aligned_cols=24 Identities=4% Similarity=0.046 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 227 QTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 227 ~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+.++..++..+..-+.+.+.++.+
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.78 E-value=11 Score=30.38 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039206 107 KIKDCNFELACKEKELGFVRK 127 (645)
Q Consensus 107 ~lee~~~e~~~~~~el~~l~~ 127 (645)
.|++++.++..++.++..++.
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 53
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.74 E-value=29 Score=28.47 Aligned_cols=59 Identities=14% Similarity=0.306 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206 85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDEL 143 (645)
Q Consensus 85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL 143 (645)
...|.+-.++..+.-.+.+.+++--.++..+.+..+++..++..+.....++..+..++
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445556666666666666666666677777777777777777777777666666554
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=72.57 E-value=1.1e+02 Score=33.18 Aligned_cols=7 Identities=0% Similarity=-0.600 Sum_probs=3.7
Q ss_pred CCchhhh
Q 039206 370 SAAPENL 376 (645)
Q Consensus 370 ~l~~lc~ 376 (645)
+....|.
T Consensus 240 pf~VyCD 246 (464)
T 1m1j_B 240 PYRVYCD 246 (464)
T ss_dssp CEEEEEE
T ss_pred cEEEEee
Confidence 4555663
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.02 E-value=49 Score=28.34 Aligned_cols=15 Identities=13% Similarity=-0.181 Sum_probs=5.7
Q ss_pred CchHhHHHHHHHHHH
Q 039206 75 SSSIDVDMKIRLLDE 89 (645)
Q Consensus 75 ~~~~~v~~~~~~~ee 89 (645)
.+..++..++.++.+
T Consensus 24 ~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 24 LVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.69 E-value=72 Score=29.32 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 216 LESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKERE 271 (645)
Q Consensus 216 Iee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E 271 (645)
|...+.++..++.++.+++.++.+.....+.+..++..+.-+...+...+..++.+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333333333333333333
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.83 E-value=58 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~eke 187 (645)
+.|..+++.+...|..+++.+..+.++
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.51 E-value=1.4e+02 Score=31.81 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 039206 229 FMKDLLVKLRLYE 241 (645)
Q Consensus 229 ~i~ele~El~~lr 241 (645)
++.+..+.|..++
T Consensus 405 ~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 405 ELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHH
Confidence 3333333333333
No 59
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=65.80 E-value=40 Score=27.93 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039206 227 QTFMKDLLVKLRLYEDNLQSL 247 (645)
Q Consensus 227 ~~~i~ele~El~~lr~e~e~l 247 (645)
+..+..++.++..++.+....
T Consensus 34 q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.00 E-value=1.6e+02 Score=31.31 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206 59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138 (645)
Q Consensus 59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~ 138 (645)
+...+..+-.-.. +...-+......++.+..+. .++. +.++--..+++.+.+.++-+..+++.-.-++..+..
T Consensus 357 ~~~~~~~vl~G~~---t~eeal~~~~~~i~~~l~~~---~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (471)
T 3mq9_A 357 VRTAVINAASGRQ---TVDEALKDAQTRITAARDGL---RAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMA 429 (471)
T ss_dssp HHHHHHHHHHSSS---CHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhh---HHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHH
Confidence 4444555444333 55555665555555544332 2221 334445555666666666666666666666666666
Q ss_pred HHHHHH
Q 039206 139 KEDELN 144 (645)
Q Consensus 139 le~eL~ 144 (645)
+..-|+
T Consensus 430 ~~~~~~ 435 (471)
T 3mq9_A 430 LMASLD 435 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=62.71 E-value=35 Score=28.33 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039206 211 AVKAKLESEKRELELTQTFMKDL 233 (645)
Q Consensus 211 ~le~eIee~e~ELeel~~~i~el 233 (645)
.+..++...+.+|+.+..++.++
T Consensus 60 ~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 60 KVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444
No 62
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.99 E-value=49 Score=25.04 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 80 VDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELG 123 (645)
Q Consensus 80 v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~ 123 (645)
+..++..+++..+....+..++......+..+...+......+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333333
No 63
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.52 E-value=78 Score=26.55 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQK 188 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~ekei 188 (645)
+.|..+++.+...|..+++.+..+++++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444444443333
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=59.46 E-value=72 Score=26.14 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039206 229 FMKDLLVKLRLYEDNL 244 (645)
Q Consensus 229 ~i~ele~El~~lr~e~ 244 (645)
.+..++.++..++.+.
T Consensus 34 ~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 65
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.14 E-value=12 Score=42.11 Aligned_cols=13 Identities=0% Similarity=-0.248 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhh
Q 039206 59 IQELFDLTMKSLE 71 (645)
Q Consensus 59 ~e~~~~~~r~~~~ 71 (645)
++.|-+-.+.+..
T Consensus 285 ~~~H~ff~~~r~~ 297 (575)
T 2i1j_A 285 MGNHELYMRRRKP 297 (575)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHccCC
Confidence 5555554444433
No 66
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.66 E-value=77 Score=26.16 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 196 EACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNL 244 (645)
Q Consensus 196 E~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~ 244 (645)
+.++..+..++.++..++.++...-.+...+-.-=..++.+++-++.=+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333344444444444444444333333344455555554433
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=53.54 E-value=54 Score=27.13 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039206 86 LLDERAKEIENKESELVLVEKK 107 (645)
Q Consensus 86 ~~ee~~~~~e~~~~eie~~e~~ 107 (645)
+++.+...|+.++.+|..++..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.61 E-value=2.7e+02 Score=30.05 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=0.0
Q ss_pred hhHhhhh
Q 039206 413 LLVLDAM 419 (645)
Q Consensus 413 ~LVLd~~ 419 (645)
+|||+..
T Consensus 241 ~mvLE~~ 247 (491)
T 1m1j_A 241 QVVLERP 247 (491)
T ss_dssp -------
T ss_pred EEEEecC
Confidence 5666665
No 69
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.22 E-value=1.1e+02 Score=34.25 Aligned_cols=6 Identities=0% Similarity=-0.092 Sum_probs=2.2
Q ss_pred HHHhhC
Q 039206 361 DILQLH 366 (645)
Q Consensus 361 ~~i~~~ 366 (645)
.+|+.|
T Consensus 567 ~Rid~F 572 (575)
T 2i1j_A 567 RRVDQF 572 (575)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.71 E-value=77 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 79 DVDMKIRLLDERAKEIENKESELVLVEKKI 108 (645)
Q Consensus 79 ~v~~~~~~~ee~~~~~e~~~~eie~~e~~l 108 (645)
++......++.+..+..++..++..++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444334433333333333
No 71
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.67 E-value=1.2e+02 Score=25.42 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206 188 KASIRAMIEACTEKLEAIEESYDAVKAKLES 218 (645)
Q Consensus 188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee 218 (645)
+..+.+.+...-++++.++.+-..++.+|..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555655555555555444433
No 72
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.50 E-value=1.1e+02 Score=33.63 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=8.6
Q ss_pred HHHHHHHHHhCCCCC
Q 039206 578 LGLLHLLGAFRLAPA 592 (645)
Q Consensus 578 ~~~L~~I~~y~L~s~ 592 (645)
+.+.-+|+.|+-+..
T Consensus 442 R~l~alLEn~q~~dG 456 (501)
T 1wle_A 442 RLLIALLESYQQKDG 456 (501)
T ss_dssp HHHHHHHHHHBCTTS
T ss_pred HHHHHHHHhCCCCCC
Confidence 455566777754443
No 73
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=47.16 E-value=3.2e+02 Score=29.85 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 162 EKQKRLESLDGEVRESEKELVL--MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRL 239 (645)
Q Consensus 162 el~~~ieei~~eI~~~e~~ie~--~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~ 239 (645)
++++++++-+..-..-..+-.. ++++.+..+.+++..+..+++..+++.....-+.+.+.+|......+.........
T Consensus 295 elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~ 374 (551)
T 2b5u_A 295 QVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQ 374 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhh
Q ss_pred HH------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 039206 240 YE------------------DNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLAC 299 (645)
Q Consensus 240 lr------------------~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~ 299 (645)
+- -.....+..++.++...+...+++..-...+....+.....+.+-...+..+..++.+
T Consensus 375 f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~e~~k 452 (551)
T 2b5u_A 375 FNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK 452 (551)
T ss_dssp HGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhhhhhccchhhhC
No 74
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.20 E-value=54 Score=26.71 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206 93 EIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGV 131 (645)
Q Consensus 93 ~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e 131 (645)
++..++..+.-.+..|+++..-+.....+++.++..+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333333333
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.40 E-value=1.6e+02 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206 265 LELKEREFCRIQERIEESSQELLLKENQLKS 295 (645)
Q Consensus 265 le~le~E~~~l~~~le~~~~ei~e~e~el~~ 295 (645)
+++++.++..+...+...+.+++.++.+...
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 4444444444444444444444444444433
No 76
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.30 E-value=67 Score=35.17 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=18.4
Q ss_pred hhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHH
Q 039206 49 EQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVD 81 (645)
Q Consensus 49 ~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~ 81 (645)
++.-.+-.+| +..+++.++.++. ..+++|.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn---~~sk~i~ 64 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLN---SVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4455555566 6777777777766 5555554
No 77
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=44.27 E-value=1.3e+02 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 213 KAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 213 e~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
+.+++..+.+|+.+ .+++..+.+++.++..+..+
T Consensus 50 qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e 83 (125)
T 2pms_C 50 QSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQ 83 (125)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHH
Confidence 34445555554444 23444444444444444444
No 78
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.95 E-value=41 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 039206 95 ENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSEL 136 (645)
Q Consensus 95 e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el 136 (645)
++++..|++++..+.+++.....+..+...++..+..+..++
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555544444444444443
No 79
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.90 E-value=1.2e+02 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 039206 267 LKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCS 304 (645)
Q Consensus 267 ~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~ 304 (645)
.+..+...+.+.+..+..++..+++++...-..|++.-
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33444444444555555555555555555555555443
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.42 E-value=1.4e+02 Score=24.39 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 196 EACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 196 E~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~ 242 (645)
..++..+..++..+...+.++...-.+...+-.-=..++.+++-++.
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444444444444444333333444455554444
No 81
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=42.37 E-value=2.3e+02 Score=27.72 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.8
Q ss_pred hhHHHhHHHHhH
Q 039206 26 VLVELRVAELKK 37 (645)
Q Consensus 26 ~~~~~~~~~~~~ 37 (645)
.+..++.+++.+
T Consensus 29 ~~~~~~~s~l~~ 40 (243)
T 2a01_A 29 YVSQFEGSALGK 40 (243)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 444455555543
No 82
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.05 E-value=1.3e+02 Score=26.74 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039206 226 TQTFMKDLLVKLRLYEDNL 244 (645)
Q Consensus 226 l~~~i~ele~El~~lr~e~ 244 (645)
++..+.+++.+++.++.++
T Consensus 66 L~~ki~eL~~kvA~le~e~ 84 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQL 84 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 83
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=41.11 E-value=2.6e+02 Score=27.24 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhhchh
Q 039206 140 EDELNLVKNSAEKWPK 155 (645)
Q Consensus 140 e~eL~~le~ei~~~~~ 155 (645)
...++++...+.-...
T Consensus 131 ~~~~eel~~~L~p~~e 146 (243)
T 2a01_A 131 RQKLHELQEKLSPLGE 146 (243)
T ss_dssp HHHHHHHCCSCCSSTH
T ss_pred HhhHHHHHHHHHhHHH
Confidence 3444444444444433
No 84
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.02 E-value=94 Score=33.99 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=29.3
Q ss_pred HHHHHhhhcch--HhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHH
Q 039206 37 KETLRRSFDLP--HEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMK 83 (645)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~ 83 (645)
+++++++.... =++.-.+-.+| +..+++.++.++. .++++|-.+
T Consensus 23 ~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN---~~sk~i~~~ 70 (484)
T 3lss_A 23 RESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLIN---ICSKAVGAK 70 (484)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44555554432 35666777777 8888888888888 666777543
No 85
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=39.86 E-value=2e+02 Score=28.31 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206 80 VDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP 154 (645)
Q Consensus 80 v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~ 154 (645)
+..+.++.+.+...++-+.-+-.-...+|.++...++.+..-...+-.++..++..-..++.+|..++..|+...
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444444444444444444444444444444455555555555555555554433
No 86
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.73 E-value=82 Score=34.11 Aligned_cols=30 Identities=3% Similarity=0.222 Sum_probs=18.4
Q ss_pred hhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHH
Q 039206 49 EQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVD 81 (645)
Q Consensus 49 ~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~ 81 (645)
++.-.+-.+| +..+++.++.++. .++++|.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n---~~sk~i~ 62 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERN---KIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4444555556 7777777777766 5555554
No 87
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.38 E-value=78 Score=33.88 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206 271 EFCRIQERIEESSQELLLKENQLKSVLACIED 302 (645)
Q Consensus 271 E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~ 302 (645)
+...+.+.+..+..++..+++++...-..|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 72 RGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33333344444444444444444444333333
No 88
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.90 E-value=3.8e+02 Score=28.47 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=4.5
Q ss_pred CCchhhHhh
Q 039206 409 ADPALLVLD 417 (645)
Q Consensus 409 ~dPa~LVLd 417 (645)
..|..|.++
T Consensus 241 ~~~~eL~I~ 249 (409)
T 1m1j_C 241 TLPYALRIE 249 (409)
T ss_dssp SCCEEEEEE
T ss_pred CCCEEEEEE
Confidence 355555554
No 89
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.33 E-value=70 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206 161 KEKQKRLESLDGEVRESEKELVLMKEQ 187 (645)
Q Consensus 161 ~el~~~ieei~~eI~~~e~~ie~~eke 187 (645)
.+|...|+.+..+|...+..|..+.+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555444333
No 90
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.82 E-value=1.2e+02 Score=21.57 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206 113 FELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE 151 (645)
Q Consensus 113 ~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~ 151 (645)
.+..+++.+-+.+.+.---...-++.++++|.++.+.|+
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444443333334445555555555555443
No 91
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=35.46 E-value=2.5e+02 Score=26.89 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=25.9
Q ss_pred chhhHHHhHHHHhHHH---HHhhhcchHhhhhhHHHHH
Q 039206 24 GLVLVELRVAELKKET---LRRSFDLPHEQLGLFTAQW 58 (645)
Q Consensus 24 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 58 (645)
.-.+..|+-++|.||- +..+++.++...+.+..++
T Consensus 26 ~~~v~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l 63 (216)
T 2lem_A 26 RDYVSQFESSSLGQQLNLNLLENWDTLGSTVSQLQERL 63 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHH
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888763 7777887777777777777
No 92
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.32 E-value=2e+02 Score=24.17 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 039206 233 LLVKLRLY 240 (645)
Q Consensus 233 le~El~~l 240 (645)
++.+++-+
T Consensus 77 Le~EIatY 84 (95)
T 3mov_A 77 LDMEISAY 84 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.76 E-value=2.1e+02 Score=31.29 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=16.6
Q ss_pred hhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHH
Q 039206 49 EQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVD 81 (645)
Q Consensus 49 ~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~ 81 (645)
++.-.+-.+| +..+++.++.++. .++++|.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn---~~sk~i~ 101 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKE---AVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444455555 6666666666665 4445554
No 94
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.20 E-value=1.6e+02 Score=32.14 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 039206 270 REFCRIQERIEESSQELLLKENQLKSVLACIEDC 303 (645)
Q Consensus 270 ~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~ 303 (645)
.+...+.+.+..+..++..+++++...-..|++.
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344444444444444555555555444444443
No 95
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.10 E-value=2.4e+02 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039206 107 KIKDCNFELACKEKELGFVRKRIGVC 132 (645)
Q Consensus 107 ~lee~~~e~~~~~~el~~l~~~i~e~ 132 (645)
.+..+..++..+...+..+...+.+.
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~ 34 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444433333333
No 96
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.87 E-value=1.9e+02 Score=23.45 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206 258 LECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV 296 (645)
Q Consensus 258 le~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~ 296 (645)
=.++....+.+..-.+.|..+++.++.+-+.+..++.+.
T Consensus 18 N~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 18 NTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444455555555556666666666555555555444
No 97
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.63 E-value=90 Score=33.38 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=16.7
Q ss_pred hhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHH
Q 039206 49 EQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVD 81 (645)
Q Consensus 49 ~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~ 81 (645)
++.-.+-.+| +..+++.++.++. .++++|.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n---~~sk~i~ 59 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERN---QVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3333444555 6666666666666 4445544
No 98
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.55 E-value=3e+02 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=20.8
Q ss_pred hhhHHHhHHHHhHHH---HHhhhcchHhhhhhHHHHH
Q 039206 25 LVLVELRVAELKKET---LRRSFDLPHEQLGLFTAQW 58 (645)
Q Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 58 (645)
-.+..|+-++|.|+- +..+++.++...+.+..++
T Consensus 29 ~~ve~l~~seL~qqL~~~l~e~~~~l~~~~~~l~~~l 65 (185)
T 3r2p_A 29 DYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQL 65 (185)
T ss_dssp HHHHHHHHSHHHHHTTCCCCTTCSCSSCHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345557777777763 5556666666666666655
No 99
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=32.11 E-value=2.2e+02 Score=23.71 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039206 235 VKLRLYEDNLQSLQST 250 (645)
Q Consensus 235 ~El~~lr~e~e~l~ee 250 (645)
+.+++++..++.-+-.
T Consensus 4 n~La~le~sLe~EK~S 19 (101)
T 1d7m_A 4 NRLAGLENSLESEKVS 19 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcc
Confidence 3444555544444333
No 100
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=31.42 E-value=3.3e+02 Score=26.80 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206 79 DVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146 (645)
Q Consensus 79 ~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~l 146 (645)
+-..+...++=+.-+-.-...||.++...|+.+..-+..+-..++.++..=-.++.++..++.+++-+
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555555555555555555555555544444444444444444443
No 101
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.42 E-value=2e+02 Score=22.95 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 240 YEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI 279 (645)
Q Consensus 240 lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l 279 (645)
...++..+++.+.-.-++.+.+..++=++..+-+-+.+++
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444433
No 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.14 E-value=2.7e+02 Score=26.40 Aligned_cols=9 Identities=22% Similarity=-0.149 Sum_probs=4.1
Q ss_pred HHHHhHHHH
Q 039206 288 LKENQLKSV 296 (645)
Q Consensus 288 e~e~el~~~ 296 (645)
.+=+-+..+
T Consensus 76 DL~e~LTGl 84 (190)
T 4emc_A 76 DLYEYLCNV 84 (190)
T ss_dssp HHHHHHHSE
T ss_pred HHHHHccCc
Confidence 344444554
No 103
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.63 E-value=1.3e+02 Score=32.07 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.2
Q ss_pred ChHHHHHHHHhhhccc
Q 039206 503 DGNELASLLDIVANHR 518 (645)
Q Consensus 503 ~~del~~l~~~v~~~~ 518 (645)
+.+++..++.....++
T Consensus 244 s~~e~~~ll~~g~~~R 259 (403)
T 4etp_A 244 SEEMVEIILKKANKLR 259 (403)
T ss_dssp CHHHHHHHHHHHC--C
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5666666665544333
No 104
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.09 E-value=2e+02 Score=22.65 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039206 236 KLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFC 273 (645)
Q Consensus 236 El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~ 273 (645)
++.++..........+...+.++.+++..++.++.+++
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 105
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.56 E-value=3.5e+02 Score=25.22 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206 224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268 (645)
Q Consensus 224 eel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l 268 (645)
+.+..++.++..++...-.+.+.+.+++.....++.-++.-++.+
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF 57 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAF 57 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333
No 106
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=29.22 E-value=5.8e+02 Score=27.61 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206 223 LELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF 272 (645)
Q Consensus 223 Leel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~ 272 (645)
+...+..+..+.+.+..++.+++....+...+...+..+.++...++..+
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444444444444444433333
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.82 E-value=1.4e+02 Score=31.66 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=4.4
Q ss_pred hHhhhhcCC
Q 039206 414 LVLDAMSGF 422 (645)
Q Consensus 414 LVLd~~e~~ 422 (645)
+|-++++||
T Consensus 132 lv~~~l~G~ 140 (403)
T 4etp_A 132 LVQSSLDGY 140 (403)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCc
Confidence 444555554
No 108
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.88 E-value=2.9e+02 Score=23.71 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 162 EKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY 240 (645)
Q Consensus 162 el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l 240 (645)
.-.+.++++..+|...|..+..+...+.+.....+.--..+ .+..+..++.....++.++.++...++..
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDev---------NK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDV---------NKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665544333322222222111111 12334455555555555555555444443
No 109
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.82 E-value=1.1e+02 Score=22.00 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=6.5
Q ss_pred HHHhHhHHHHhhHHHHHH
Q 039206 127 KRIGVCNSELQSKEDELN 144 (645)
Q Consensus 127 ~~i~e~~~el~~le~eL~ 144 (645)
.+|...+..|..+++.+.
T Consensus 16 rEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 110
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.25 E-value=3.4e+02 Score=24.01 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcCCchHhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 039206 63 FDLTMKSLEKQSSSSIDVDMKIRLLDE---------------RAKEIENKESELVLVEKKIKDCNFELACKEKELGFV-- 125 (645)
Q Consensus 63 ~~~~r~~~~~~~~~~~~v~~~~~~~ee---------------~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l-- 125 (645)
|+..+..+. +.|.+.+..+.. +..-...+..-|..++.+|+++++-+.-.+..-..-
T Consensus 29 F~~Vk~EVq------~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l 102 (130)
T 4dnd_A 29 FFVVRGEVQ------KAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL 102 (130)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_pred cHHHHHHHH------HHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC
Q ss_pred -HHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206 126 -RKRIGVCNSELQSKEDELNLVKNSAEK 152 (645)
Q Consensus 126 -~~~i~e~~~el~~le~eL~~le~ei~~ 152 (645)
..+|..++.=+...+.+|..++.++..
T Consensus 103 ~~~Ei~~Rr~fV~~~r~~I~~mk~~l~~ 130 (130)
T 4dnd_A 103 PAGDLQERKVFVERMREAVQEMKDHMVS 130 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 111
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.78 E-value=6.5e+02 Score=27.11 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 039206 274 RIQERIEESSQELLLKENQL 293 (645)
Q Consensus 274 ~l~~~le~~~~ei~e~e~el 293 (645)
.|+..++.+..+|..+|..|
T Consensus 136 vLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 112
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.62 E-value=3.1e+02 Score=29.87 Aligned_cols=31 Identities=6% Similarity=0.148 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 039206 273 CRIQERIEESSQELLLKENQLKSVLACIEDC 303 (645)
Q Consensus 273 ~~l~~~le~~~~ei~e~e~el~~~~~~i~~~ 303 (645)
..+.+.+..+..++..+++++...-..|++.
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344444444444455555554444444443
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.59 E-value=2.8e+02 Score=22.74 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206 108 IKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNL 145 (645)
Q Consensus 108 lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~ 145 (645)
+-++...++..+.+++.+++.+++..-++..+.+...+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555444444433
No 114
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.73 E-value=5.9e+02 Score=26.20 Aligned_cols=195 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114 (645)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e 114 (645)
+..|...++.|....+...... +-.++..-+..+. ...+........+...+....+.|..++++|+.++.+
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~------~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIG------HDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh---------------HhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHH
Q 039206 115 LACKEKELGFVRKRIG---------------VCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEK 179 (645)
Q Consensus 115 ~~~~~~el~~l~~~i~---------------e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~ 179 (645)
+....+-+..--.-+. ...+++..+.+++..+...|....- +..-+..+...+..+..
T Consensus 192 I~~~~~~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~-------l~~~l~~~~~~~~~l~~ 264 (346)
T 2nrj_A 192 VNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVT-------LNRVVGVAYSNINEMHK 264 (346)
T ss_dssp GCGGGCCC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 180 ELVLMKEQKASIRAMIEACTEKLEAIEESYDA-----VKAKLESEKRELELTQTFMKDLLVKLRLYEDNL 244 (645)
Q Consensus 180 ~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~-----le~eIee~e~ELeel~~~i~ele~El~~lr~e~ 244 (645)
.|..+-.-++.+...=..+...+..+...++. -...+.-....|......+.++..-...+....
T Consensus 265 ~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~~a~~l~~~~ 334 (346)
T 2nrj_A 265 ALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGI 334 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
No 115
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.42 E-value=1e+02 Score=24.47 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 101 LVLVEKKIKDCNFELACKEKELGF 124 (645)
Q Consensus 101 ie~~e~~lee~~~e~~~~~~el~~ 124 (645)
|.+++..+..-..++..++.++++
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 116
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.78 E-value=1.1e+02 Score=25.89 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=6.4
Q ss_pred hHhHHHHhhHHHHHHHH
Q 039206 130 GVCNSELQSKEDELNLV 146 (645)
Q Consensus 130 ~e~~~el~~le~eL~~l 146 (645)
..+..-+..++.+|..+
T Consensus 71 ~~Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 71 SGREAQVKNIKQQLDAL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 117
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.23 E-value=5e+02 Score=24.91 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 220 KRELELTQTFMKDLLVKLRLYEDNLQSLQST 250 (645)
Q Consensus 220 e~ELeel~~~i~ele~El~~lr~e~e~l~ee 250 (645)
...+..++.++...+.++..++.+...+...
T Consensus 104 ~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~ 134 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGEIASLQTNVSALDGR 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeecccccchhhhhhhhhhccc
Confidence 3344444444555555555555554444444
No 118
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.34 E-value=3.9e+02 Score=23.82 Aligned_cols=7 Identities=43% Similarity=0.311 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 039206 178 EKELVLM 184 (645)
Q Consensus 178 e~~ie~~ 184 (645)
+++++.+
T Consensus 104 ~~ri~~l 110 (151)
T 2zdi_C 104 EKRLKEY 110 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 119
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.00 E-value=2.4e+02 Score=29.95 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039206 224 ELTQTFMKDLLVKLRLYEDNLQ 245 (645)
Q Consensus 224 eel~~~i~ele~El~~lr~e~e 245 (645)
.+++++..++..++..++.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 120
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.59 E-value=1.4e+02 Score=25.11 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206 211 AVKAKLESEKRELELTQTFMKDLLVKLRLYED 242 (645)
Q Consensus 211 ~le~eIee~e~ELeel~~~i~ele~El~~lr~ 242 (645)
+.+..|...-.++..++..+.+++.....++.
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq 71 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKD 71 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666665555544444
No 121
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.02 E-value=8.4e+02 Score=26.27 Aligned_cols=6 Identities=0% Similarity=-0.479 Sum_probs=3.5
Q ss_pred CCchhh
Q 039206 370 SAAPEN 375 (645)
Q Consensus 370 ~l~~lc 375 (645)
+..-.|
T Consensus 235 p~~VyC 240 (461)
T 3ghg_B 235 PYRVYC 240 (461)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 455666
Done!