BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039208
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 161/436 (36%), Gaps = 129/436 (29%)
Query: 14 PSPGSSHLLSMDELGKLILTHYPYFSVTIIIS-TFPTLRGQLALLNS------------- 59
PSPG HL+ + E K L H +VT +I+ P + Q +L+S
Sbjct: 13 PSPGMGHLIPLVEFAKR-LVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPV 71
Query: 60 --PNLHKTLIIQSKTSNLKT----------------------LIIDFFHKVALQVSCSLN 95
+L + I+S+ S T L++D F A V+ +
Sbjct: 72 DLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFH 131
Query: 96 IPTYLFYXXXXXXLAQVLYLPNTYGTTN----GLKDPQMVLDIPCVPY------------ 139
+P Y+FY L+ L+LP T + L +P M+ CVP
Sbjct: 132 VPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPG--CVPVAGKDFLDPAQDR 189
Query: 140 ----------------------------------------GEQMPPLYCTGAILAATTSD 159
G PP+Y G ++ +
Sbjct: 190 KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQE 249
Query: 160 NKNDDHT-CFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPL 206
K + + C WLD QP ++++ F E+A+ L S FLWV+ P
Sbjct: 250 AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSP-- 307
Query: 207 EDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDS---------- 256
+ + ++ FLP GF+ERT+ G + WAPQ VL+H S
Sbjct: 308 SGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGW 367
Query: 257 ---VVAVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAERRVIEGIRAPKEQA--VGA 311
+ +V +G+P++AWP +Q +N L E IR L R +G+ +E A V
Sbjct: 368 NSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR--PRAGDDGLVRREEVARVVKG 425
Query: 312 LSEGGRSLAVVAELAE 327
L EG V ++ E
Sbjct: 426 LMEGEEGKGVRNKMKE 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/471 (22%), Positives = 159/471 (33%), Gaps = 172/471 (36%)
Query: 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-------RGQLA------ 55
L F P+PG HL S E KL+ H +T+ FP + + LA
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 56 -------------LLNSPNLHKTLIIQSKTSNLKT------------LIIDFFHKVALQV 90
LL SP + ++S ++K L++DFF + V
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 91 SCSLNIPTYLFYXXXXXXLAQVLYLP------------------NTYGTTNGLKDPQMVL 132
IP+YLF L+ +L L N G +N + P VL
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSNVL 188
Query: 133 DIPCV---------------------------------------PYGEQMPPLYCTGAIL 153
C + E++PP+Y G +L
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLL 248
Query: 154 AATTSDNKNDDHT----CFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAA 196
N D WLD+QP +VFLCF E+A+ LK SG
Sbjct: 249 DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 197 FLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLP-VKSWAPQVDVLSHD 255
FLW + ++ + PEGF+E G + WAPQV+VL+H
Sbjct: 309 FLW-------------------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 256 SVVAVRT-------------GVPMVAWPSNGDQMVN-----------MAFLVEKIRDPLT 291
++ + GVP++ WP +Q +N + V+ +
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 292 VAERRVIEGIR--------------APKEQAVGALSEGGRSLAVVAELAES 328
VA + +G++ KE + A+ +GG SL V +L +
Sbjct: 410 VAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/471 (22%), Positives = 159/471 (33%), Gaps = 172/471 (36%)
Query: 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-------RGQLA------ 55
L F P+PG HL S E KL+ H +T+ FP + + LA
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 56 -------------LLNSPNLHKTLIIQSKTSNLKT------------LIIDFFHKVALQV 90
LL SP + ++S ++K L++DFF + V
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 91 SCSLNIPTYLFYXXXXXXLAQVLYLP------------------NTYGTTNGLKDPQMVL 132
IP+YLF L+ +L L N G +N + P VL
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSNVL 188
Query: 133 DIPCV---------------------------------------PYGEQMPPLYCTGAIL 153
C + E++PP+Y G +L
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLL 248
Query: 154 AATTSDNKNDDHT----CFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAA 196
N D WLD+QP +VFLCF E+A+ LK SG
Sbjct: 249 DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 197 FLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLP-VKSWAPQVDVLSHD 255
FLW + ++ + PEGF+E G + WAPQV+VL+H
Sbjct: 309 FLW-------------------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 256 SVVAVRT-------------GVPMVAWPSNGDQMVN-----------MAFLVEKIRDPLT 291
++ + GVP++ WP +Q +N + V+ +
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 292 VAERRVIEGIR--------------APKEQAVGALSEGGRSLAVVAELAES 328
VA + +G++ KE + A+ +GG SL V +L +
Sbjct: 410 VAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 48/194 (24%)
Query: 162 NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDE 209
+D+H C WLD+ + +V++ F +A L+ G F+W P E
Sbjct: 258 SDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEK- 316
Query: 210 FRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVVAVRT------- 262
LP+GF+ERT+ G + +WAPQV++L H SV T
Sbjct: 317 -----------------LPKGFLERTKTKG-KIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 263 ------GVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAERRVI--EGIRAPKEQAVGALSE 314
GVPM++ P GDQ +N L E + + + V+ E I+ E + + +
Sbjct: 359 LECIVGGVPMISRPFFGDQGLN-TILTESVLEIGVGVDNGVLTKESIKKALELTMSS-EK 416
Query: 315 GGRSLAVVAELAES 328
GG + +L ES
Sbjct: 417 GGIMRQKIVKLKES 430
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 50/159 (31%)
Query: 167 CFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTL 214
C WL ++ +V++ F ++ L+ S F+W L D+
Sbjct: 261 CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIW-----SLRDK----- 310
Query: 215 TVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVVA-------------VR 261
A + LPEGF+E+TR +G+ V WAPQ +VL+H++V A V
Sbjct: 311 --------ARVHLPEGFLEKTRGYGM-VVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVA 361
Query: 262 TGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAERRVIEG 300
GVP++ P GDQ +N + D L + R IEG
Sbjct: 362 GGVPLICRPFFGDQRLNG----RMVEDVLEIGVR--IEG 394
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 40/148 (27%)
Query: 163 DDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEF 210
+D C WL+ + +V++ F E A L +FLW++
Sbjct: 281 EDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWII--------- 331
Query: 211 RQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVVAVRT-------- 262
R L + + F D GL + SW PQ VL+H S+ T
Sbjct: 332 RPDLVIG-----GSVIFSSEFTNEIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTT 385
Query: 263 -----GVPMVAWPSNGDQMVNMAFLVEK 285
GVPM+ WP DQ + F+ +
Sbjct: 386 ESICAGVPMLCWPFFADQPTDCRFICNE 413
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 242 VKSWAPQVDVLSHDSVVAVRTG-----------VPMVAWPSNGDQMVNMAFLVE 284
V W PQ+D+L+ S G VPMVA P +Q +N +VE
Sbjct: 309 VHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 172 DKQPSHCIVFLCFEMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLP 228
DK P + L + MR KRSGA VLFP L+ F ++ + A++ LP
Sbjct: 597 DKTPQ--VYMLLSQNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYADIVLP 651
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 190 LKRSGAAFLWVVLFPPLE-DEFRQTLT 215
LKR G FLWVV FP LE DE + T
Sbjct: 413 LKREGFRFLWVVDFPLLEWDEEEEAWT 439
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 125 LKDPQMVLDIPC----VPYGEQMPPLYCTG--------AILAATTSDNKNDDHTCFSWLD 172
LKD Q+V+DIP + E+ P + G +IL + N N D T + W
Sbjct: 81 LKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIY-WGG 139
Query: 173 KQPSHCIVFLCFEMAMRLKRSGAAFLWVVLFP 204
++ H + LC A+ LK G + VV P
Sbjct: 140 REEQH-LYDLCELEALSLKHPGLQVVPVVEQP 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,358,491
Number of Sequences: 62578
Number of extensions: 354953
Number of successful extensions: 663
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 15
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)