Query 039208
Match_columns 331
No_of_seqs 198 out of 1394
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 4E-57 8.7E-62 436.3 30.9 316 1-331 1-450 (451)
2 PLN02992 coniferyl-alcohol glu 100.0 3.9E-56 8.5E-61 430.5 29.4 319 6-330 4-468 (481)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.5E-55 5.5E-60 426.5 30.4 313 4-331 6-471 (477)
4 PLN03015 UDP-glucosyl transfer 100.0 2.2E-55 4.7E-60 423.3 28.5 313 6-330 2-467 (470)
5 PLN02207 UDP-glycosyltransfera 100.0 5.5E-55 1.2E-59 421.6 30.0 310 6-331 2-465 (468)
6 PLN00164 glucosyltransferase; 100.0 1E-54 2.2E-59 423.3 30.2 318 6-331 2-473 (480)
7 PLN02173 UDP-glucosyl transfer 100.0 1.4E-54 3E-59 417.3 29.2 301 7-330 5-447 (449)
8 PLN02152 indole-3-acetate beta 100.0 6.6E-54 1.4E-58 413.2 29.2 315 7-330 3-455 (455)
9 PLN02210 UDP-glucosyl transfer 100.0 7.7E-54 1.7E-58 414.7 29.7 306 4-330 5-454 (456)
10 PLN02534 UDP-glycosyltransfera 100.0 6.9E-54 1.5E-58 416.2 29.4 312 6-331 7-486 (491)
11 PLN02555 limonoid glucosyltran 100.0 1.1E-53 2.3E-58 414.3 30.4 315 1-331 1-469 (480)
12 PLN02562 UDP-glycosyltransfera 100.0 1E-53 2.3E-58 413.2 29.4 305 4-330 3-448 (448)
13 PLN02554 UDP-glycosyltransfera 100.0 2.8E-53 6E-58 414.3 31.1 320 7-331 2-478 (481)
14 PLN03007 UDP-glucosyltransfera 100.0 2.5E-53 5.4E-58 415.0 30.7 310 7-331 5-480 (482)
15 PLN02208 glycosyltransferase f 100.0 3.1E-53 6.8E-58 408.3 29.2 304 6-331 3-439 (442)
16 PLN02764 glycosyltransferase f 100.0 4.5E-53 9.8E-58 406.0 29.2 309 5-331 3-445 (453)
17 PLN02167 UDP-glycosyltransfera 100.0 6E-53 1.3E-57 411.3 28.4 313 6-331 2-472 (475)
18 PLN03004 UDP-glycosyltransfera 100.0 5.8E-53 1.2E-57 406.3 26.8 307 6-321 2-451 (451)
19 PLN00414 glycosyltransferase f 100.0 2.3E-52 5E-57 402.7 29.4 307 5-331 2-440 (446)
20 PLN02670 transferase, transfer 100.0 5.6E-51 1.2E-55 394.2 27.0 308 5-331 4-465 (472)
21 PLN02448 UDP-glycosyltransfera 100.0 2.8E-50 6.1E-55 391.4 28.6 299 5-331 8-457 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.5E-31 5.4E-36 260.9 28.7 274 6-310 19-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.1E-35 4.5E-40 291.2 -2.1 268 9-310 2-425 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 1.9E-31 4.1E-36 262.7 19.7 264 7-294 5-405 (496)
25 cd03784 GT1_Gtf_like This fami 100.0 2E-27 4.4E-32 227.9 22.3 254 8-294 1-354 (401)
26 TIGR01426 MGT glycosyltransfer 99.9 5.7E-26 1.2E-30 217.5 20.6 248 13-294 1-341 (392)
27 COG1819 Glycosyl transferases, 99.9 2.1E-21 4.5E-26 186.0 16.0 278 7-328 1-397 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.3 4.1E-11 8.8E-16 111.3 15.9 239 8-294 1-302 (318)
29 PRK12446 undecaprenyldiphospho 99.3 8.3E-10 1.8E-14 104.4 24.2 247 9-294 3-307 (352)
30 TIGR00661 MJ1255 conserved hyp 99.2 1.6E-10 3.5E-15 107.8 13.7 238 9-295 1-300 (321)
31 PRK00726 murG undecaprenyldiph 98.9 6.2E-07 1.4E-11 84.6 24.2 283 7-331 1-357 (357)
32 COG0707 MurG UDP-N-acetylgluco 98.9 1.3E-06 2.8E-11 82.5 23.8 94 9-104 2-123 (357)
33 PF03033 Glyco_transf_28: Glyc 98.9 1.9E-09 4.1E-14 87.8 3.8 96 10-107 1-133 (139)
34 cd03785 GT1_MurG MurG is an N- 98.6 6.8E-06 1.5E-10 77.1 19.9 91 9-101 1-118 (350)
35 PRK13609 diacylglycerol glucos 98.5 1.9E-05 4.2E-10 75.2 21.6 89 238-328 256-368 (380)
36 TIGR01133 murG undecaprenyldip 98.3 0.00022 4.8E-09 66.7 21.7 91 8-101 1-119 (348)
37 TIGR03590 PseG pseudaminic aci 98.2 2.4E-05 5.2E-10 71.6 12.2 221 17-281 13-278 (279)
38 PRK13608 diacylglycerol glucos 98.1 0.00085 1.8E-08 64.4 21.2 88 239-328 257-368 (391)
39 cd03814 GT1_like_2 This family 98.0 0.0019 4.1E-08 59.8 20.7 84 18-104 14-116 (364)
40 PLN02605 monogalactosyldiacylg 97.9 0.0021 4.5E-08 61.4 20.8 53 240-293 267-332 (382)
41 cd03823 GT1_ExpE7_like This fa 97.5 0.078 1.7E-06 48.7 23.8 84 18-103 15-128 (359)
42 PLN02871 UDP-sulfoquinovose:DA 97.3 0.063 1.4E-06 52.7 21.8 96 5-102 56-175 (465)
43 cd03817 GT1_UGDG_like This fam 97.3 0.11 2.3E-06 47.9 22.0 88 16-105 12-118 (374)
44 cd03800 GT1_Sucrose_synthase T 97.2 0.11 2.5E-06 48.9 21.8 82 18-102 21-131 (398)
45 COG3980 spsG Spore coat polysa 96.9 0.045 9.8E-07 49.4 14.1 243 8-293 1-275 (318)
46 cd04962 GT1_like_5 This family 96.8 0.43 9.4E-06 44.5 22.5 38 8-47 1-39 (371)
47 cd03825 GT1_wcfI_like This fam 96.7 0.49 1.1E-05 43.8 22.0 76 8-101 1-82 (365)
48 cd03801 GT1_YqgM_like This fam 96.2 0.9 2E-05 41.2 21.8 85 18-104 14-117 (374)
49 PF04101 Glyco_tran_28_C: Glyc 96.0 0.0048 1E-07 51.6 2.5 56 238-294 55-126 (167)
50 TIGR00215 lpxB lipid-A-disacch 95.9 0.029 6.2E-07 53.8 8.0 90 8-101 6-119 (385)
51 PRK00025 lpxB lipid-A-disaccha 95.6 0.07 1.5E-06 50.6 9.1 92 8-102 2-116 (380)
52 PF13579 Glyco_trans_4_4: Glyc 94.0 0.12 2.5E-06 41.7 5.4 78 23-103 6-104 (160)
53 PF04007 DUF354: Protein of un 93.8 0.53 1.1E-05 44.2 9.9 85 18-106 10-114 (335)
54 cd03795 GT1_like_4 This family 93.3 6.5 0.00014 36.1 21.0 86 17-104 13-115 (357)
55 cd03802 GT1_AviGT4_like This f 93.2 0.97 2.1E-05 41.4 10.7 92 8-102 1-114 (335)
56 cd03818 GT1_ExpC_like This fam 92.8 1.2 2.7E-05 42.4 11.0 77 24-102 13-116 (396)
57 PF13844 Glyco_transf_41: Glyc 92.5 0.68 1.5E-05 45.3 8.8 102 175-293 282-414 (468)
58 cd03816 GT1_ALG1_like This fam 92.2 1.9 4.2E-05 41.6 11.6 38 7-46 3-40 (415)
59 PF13439 Glyco_transf_4: Glyco 91.3 1.6 3.4E-05 35.6 8.7 79 18-103 12-109 (177)
60 COG4671 Predicted glycosyl tra 91.2 1.2 2.7E-05 41.6 8.4 52 259-313 310-364 (400)
61 PF01975 SurE: Survival protei 90.4 2.4 5.3E-05 36.6 9.2 96 8-106 1-136 (196)
62 PF13477 Glyco_trans_4_2: Glyc 90.1 2.6 5.7E-05 33.4 8.8 89 9-103 1-107 (139)
63 KOG4626 O-linked N-acetylgluco 89.3 1.7 3.6E-05 43.7 8.0 31 175-205 756-798 (966)
64 cd01635 Glycosyltransferase_GT 88.5 3.5 7.6E-05 34.8 8.9 68 17-102 12-82 (229)
65 PRK10307 putative glycosyl tra 87.7 4.7 0.0001 38.6 10.2 87 239-330 285-406 (412)
66 cd03811 GT1_WabH_like This fam 87.6 4.8 0.0001 36.2 9.7 93 10-104 2-113 (353)
67 cd03796 GT1_PIG-A_like This fa 87.2 5.1 0.00011 38.2 10.0 81 19-101 15-119 (398)
68 TIGR03492 conserved hypothetic 87.1 1.4 3.1E-05 42.3 6.1 77 249-326 291-393 (396)
69 cd03808 GT1_cap1E_like This fa 87.0 5.4 0.00012 36.1 9.8 39 9-49 1-39 (359)
70 cd03794 GT1_wbuB_like This fam 87.0 5.9 0.00013 36.3 10.1 27 18-46 14-40 (394)
71 COG1817 Uncharacterized protei 86.9 8.4 0.00018 35.6 10.4 91 14-108 6-117 (346)
72 PF06722 DUF1205: Protein of u 86.2 1 2.2E-05 34.3 3.6 41 164-204 27-84 (97)
73 cd03805 GT1_ALG2_like This fam 85.4 12 0.00025 35.3 11.4 37 8-46 1-39 (392)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 84.6 5.7 0.00012 37.0 8.8 89 10-102 2-119 (363)
75 PRK05749 3-deoxy-D-manno-octul 84.5 3.2 6.9E-05 40.0 7.2 67 259-326 340-418 (425)
76 COG1703 ArgK Putative periplas 83.8 6.6 0.00014 36.1 8.2 41 4-46 48-88 (323)
77 cd04946 GT1_AmsK_like This fam 83.1 2.4 5.2E-05 40.8 5.6 84 238-326 289-406 (407)
78 PRK10422 lipopolysaccharide co 82.7 5.6 0.00012 37.4 7.8 93 7-100 5-113 (352)
79 PRK10916 ADP-heptose:LPS hepto 82.3 5.4 0.00012 37.4 7.6 92 8-100 1-106 (348)
80 PLN02846 digalactosyldiacylgly 82.0 13 0.00029 36.6 10.2 41 5-47 2-47 (462)
81 PF02310 B12-binding: B12 bind 81.6 12 0.00026 28.9 8.2 59 8-82 1-59 (121)
82 PF06925 MGDG_synth: Monogalac 81.6 9.7 0.00021 31.7 8.1 85 20-104 1-125 (169)
83 TIGR00236 wecB UDP-N-acetylglu 81.3 9.7 0.00021 35.8 9.0 91 9-101 2-116 (365)
84 COG2099 CobK Precorrin-6x redu 80.9 4.6 0.0001 36.1 6.0 76 24-102 14-100 (257)
85 TIGR02470 sucr_synth sucrose s 80.9 21 0.00045 37.6 11.6 31 259-294 663-693 (784)
86 cd03822 GT1_ecORF704_like This 80.8 8.8 0.00019 35.1 8.4 93 9-104 1-114 (366)
87 TIGR02472 sucr_P_syn_N sucrose 80.3 12 0.00026 36.3 9.5 63 259-326 360-435 (439)
88 cd03821 GT1_Bme6_like This fam 80.1 16 0.00034 33.3 9.8 29 17-47 13-41 (375)
89 TIGR03449 mycothiol_MshA UDP-N 79.8 17 0.00037 34.4 10.3 27 18-46 20-46 (405)
90 cd03812 GT1_CapH_like This fam 79.5 13 0.00029 34.1 9.2 83 16-101 10-109 (358)
91 COG1519 KdtA 3-deoxy-D-manno-o 79.1 64 0.0014 31.2 18.0 39 259-298 338-376 (419)
92 cd02067 B12-binding B12 bindin 79.0 13 0.00029 28.8 7.7 35 9-45 1-35 (119)
93 cd03798 GT1_wlbH_like This fam 78.9 20 0.00043 32.4 10.1 85 17-103 13-125 (377)
94 PRK09922 UDP-D-galactose:(gluc 78.6 20 0.00042 33.6 10.1 91 8-101 1-113 (359)
95 cd03819 GT1_WavL_like This fam 78.2 14 0.0003 33.9 8.8 83 18-103 10-109 (355)
96 TIGR00715 precor6x_red precorr 77.7 8.7 0.00019 34.7 7.0 76 24-102 12-99 (256)
97 PRK02261 methylaspartate mutas 77.5 13 0.00029 30.0 7.4 39 6-46 2-40 (137)
98 PRK09814 beta-1,6-galactofuran 77.3 7.9 0.00017 36.1 6.9 31 259-294 256-286 (333)
99 cd04955 GT1_like_6 This family 76.6 24 0.00053 32.3 10.0 82 19-102 16-115 (363)
100 PF12000 Glyco_trans_4_3: Gkyc 76.0 20 0.00043 30.2 8.3 31 72-102 64-95 (171)
101 COG3914 Spy Predicted O-linked 76.0 16 0.00035 36.6 8.6 69 259-329 527-607 (620)
102 PRK15427 colanic acid biosynth 75.9 8.3 0.00018 37.1 6.8 88 238-330 279-404 (406)
103 cd04951 GT1_WbdM_like This fam 74.7 26 0.00057 32.0 9.7 27 18-46 12-38 (360)
104 PRK05749 3-deoxy-D-manno-octul 74.6 9.3 0.0002 36.8 6.8 91 10-102 52-154 (425)
105 PRK10964 ADP-heptose:LPS hepto 74.5 9.1 0.0002 35.4 6.5 41 8-48 1-41 (322)
106 COG0496 SurE Predicted acid ph 74.4 18 0.00039 32.4 7.9 93 8-104 1-126 (252)
107 cd03804 GT1_wbaZ_like This fam 74.3 20 0.00044 33.1 8.9 89 178-294 197-310 (351)
108 PLN00142 sucrose synthase 74.2 15 0.00033 38.7 8.4 31 73-103 407-439 (815)
109 cd03820 GT1_amsD_like This fam 73.3 28 0.00061 31.1 9.4 82 18-102 13-112 (348)
110 TIGR02195 heptsyl_trn_II lipop 72.3 11 0.00025 34.9 6.6 90 9-99 1-104 (334)
111 cd02070 corrinoid_protein_B12- 71.4 15 0.00033 31.6 6.8 38 7-46 82-119 (201)
112 PRK08057 cobalt-precorrin-6x r 71.0 12 0.00027 33.5 6.2 87 8-102 3-99 (248)
113 PRK15484 lipopolysaccharide 1, 70.9 13 0.00028 35.3 6.8 67 259-330 297-376 (380)
114 cd05844 GT1_like_7 Glycosyltra 70.5 9.2 0.0002 35.4 5.6 30 259-293 290-319 (367)
115 TIGR02015 BchY chlorophyllide 70.4 41 0.00089 32.7 10.1 83 9-102 287-380 (422)
116 cd04955 GT1_like_6 This family 70.3 38 0.00082 31.0 9.7 87 238-329 248-362 (363)
117 cd01980 Chlide_reductase_Y Chl 68.9 41 0.00088 32.6 9.8 83 9-102 282-375 (416)
118 cd03789 GT1_LPS_heptosyltransf 68.8 23 0.00049 31.9 7.6 90 9-99 1-104 (279)
119 TIGR03568 NeuC_NnaA UDP-N-acet 68.7 46 0.00099 31.6 9.9 93 9-104 2-126 (365)
120 cd03818 GT1_ExpC_like This fam 68.5 9.2 0.0002 36.4 5.2 72 238-314 281-383 (396)
121 COG0859 RfaF ADP-heptose:LPS h 68.5 31 0.00068 32.2 8.7 96 7-103 1-110 (334)
122 PRK13933 stationary phase surv 68.4 48 0.001 29.9 9.3 92 8-104 1-130 (253)
123 PF03796 DnaB_C: DnaB-like hel 68.4 15 0.00033 32.8 6.3 38 10-49 22-60 (259)
124 COG1484 DnaC DNA replication p 67.6 15 0.00033 33.0 6.1 68 8-83 106-176 (254)
125 TIGR03087 stp1 sugar transfera 67.5 15 0.00033 34.9 6.5 86 13-101 8-131 (397)
126 cd03821 GT1_Bme6_like This fam 67.3 14 0.0003 33.6 6.0 50 238-293 262-329 (375)
127 cd03792 GT1_Trehalose_phosphor 66.6 39 0.00085 31.6 9.1 85 16-102 10-114 (372)
128 TIGR02193 heptsyl_trn_I lipopo 66.4 10 0.00022 34.9 4.9 92 9-101 1-112 (319)
129 PF04244 DPRP: Deoxyribodipyri 65.8 14 0.00031 32.6 5.4 73 20-102 47-124 (224)
130 PF02571 CbiJ: Precorrin-6x re 65.7 11 0.00025 33.8 4.8 86 8-102 1-100 (249)
131 TIGR03088 stp2 sugar transfera 65.4 11 0.00024 35.3 5.0 66 259-329 292-370 (374)
132 PF05728 UPF0227: Uncharacteri 65.2 70 0.0015 27.3 9.4 79 23-109 16-95 (187)
133 PRK05973 replicative DNA helic 65.1 26 0.00056 31.2 6.9 38 10-49 67-104 (237)
134 TIGR02201 heptsyl_trn_III lipo 65.0 21 0.00045 33.4 6.7 92 9-101 1-109 (344)
135 cd03806 GT1_ALG11_like This fa 64.2 31 0.00066 33.3 7.9 85 20-104 16-138 (419)
136 TIGR02370 pyl_corrinoid methyl 63.7 40 0.00087 29.0 7.7 41 6-48 83-123 (197)
137 cd03802 GT1_AviGT4_like This f 63.2 75 0.0016 28.7 10.1 31 259-294 264-294 (335)
138 PF13524 Glyco_trans_1_2: Glyc 62.4 20 0.00043 26.1 5.0 62 259-326 18-91 (92)
139 PRK10307 putative glycosyl tra 62.3 38 0.00083 32.2 8.2 37 8-46 1-41 (412)
140 PF02951 GSH-S_N: Prokaryotic 61.9 15 0.00032 29.0 4.3 38 8-47 1-41 (119)
141 PRK03359 putative electron tra 61.5 40 0.00086 30.4 7.5 40 65-104 103-148 (256)
142 COG4088 Predicted nucleotide k 61.5 87 0.0019 27.6 9.1 89 10-103 4-108 (261)
143 COG2894 MinD Septum formation 61.2 48 0.0011 29.4 7.6 37 8-46 2-40 (272)
144 PRK01021 lpxB lipid-A-disaccha 61.1 64 0.0014 32.9 9.5 93 8-102 227-343 (608)
145 PRK12342 hypothetical protein; 61.0 35 0.00076 30.8 7.1 84 19-104 31-145 (254)
146 PRK00654 glgA glycogen synthas 60.4 13 0.00029 36.4 4.7 38 8-47 1-44 (466)
147 PRK13932 stationary phase surv 58.7 1.4E+02 0.0029 27.0 10.4 94 6-104 4-134 (257)
148 cd03466 Nitrogenase_NifN_2 Nit 58.2 84 0.0018 30.6 9.8 76 21-102 309-397 (429)
149 TIGR02655 circ_KaiC circadian 57.7 51 0.0011 32.6 8.3 39 10-50 266-304 (484)
150 cd03798 GT1_wlbH_like This fam 57.7 27 0.00058 31.5 6.0 52 238-294 259-328 (377)
151 PRK13195 pyrrolidone-carboxyla 57.6 34 0.00073 30.2 6.2 62 8-81 2-68 (222)
152 smart00851 MGS MGS-like domain 57.3 30 0.00065 25.4 5.2 68 24-99 2-89 (90)
153 TIGR03449 mycothiol_MshA UDP-N 57.2 32 0.00069 32.5 6.7 51 238-293 283-351 (405)
154 cd05844 GT1_like_7 Glycosyltra 57.1 75 0.0016 29.2 9.1 32 71-102 79-112 (367)
155 cd03807 GT1_WbnK_like This fam 56.9 1.2E+02 0.0026 27.1 10.3 29 16-46 10-38 (365)
156 PRK13931 stationary phase surv 56.1 1.1E+02 0.0024 27.7 9.4 31 73-103 86-129 (261)
157 PLN02275 transferase, transfer 56.1 1.8E+02 0.0039 27.3 11.9 37 8-46 5-42 (371)
158 PRK13935 stationary phase surv 55.7 1.4E+02 0.003 26.9 9.9 92 8-104 1-129 (253)
159 TIGR02468 sucrsPsyn_pln sucros 54.7 1.1E+02 0.0023 33.6 10.4 28 19-46 196-223 (1050)
160 PF08660 Alg14: Oligosaccharid 54.4 96 0.0021 26.0 8.3 85 16-101 6-127 (170)
161 PF02441 Flavoprotein: Flavopr 54.1 20 0.00044 28.4 4.0 36 8-46 1-36 (129)
162 PF01470 Peptidase_C15: Pyrogl 54.0 49 0.0011 28.6 6.7 63 8-80 1-66 (202)
163 TIGR01285 nifN nitrogenase mol 54.0 76 0.0016 30.9 8.7 81 8-102 312-398 (432)
164 COG1797 CobB Cobyrinic acid a, 53.7 96 0.0021 30.3 8.9 93 14-110 8-126 (451)
165 PF02374 ArsA_ATPase: Anion-tr 53.6 41 0.0009 31.1 6.5 38 8-47 1-39 (305)
166 cd01121 Sms Sms (bacterial rad 53.2 49 0.0011 31.6 7.1 90 10-102 85-207 (372)
167 cd01974 Nitrogenase_MoFe_beta 53.0 1.1E+02 0.0023 29.9 9.5 84 8-102 304-402 (435)
168 TIGR01286 nifK nitrogenase mol 52.9 67 0.0014 32.2 8.2 77 20-102 371-462 (515)
169 cd03799 GT1_amsK_like This is 52.9 1.8E+02 0.0038 26.3 11.3 81 20-102 13-110 (355)
170 cd01965 Nitrogenase_MoFe_beta_ 52.9 91 0.002 30.2 9.1 82 8-102 300-396 (428)
171 COG4370 Uncharacterized protei 51.5 26 0.00055 32.5 4.5 53 241-293 298-362 (412)
172 cd02069 methionine_synthase_B1 51.5 50 0.0011 28.8 6.4 40 6-47 87-126 (213)
173 TIGR00215 lpxB lipid-A-disacch 50.9 19 0.0004 34.5 3.9 44 249-293 262-328 (385)
174 TIGR03087 stp1 sugar transfera 50.3 35 0.00075 32.4 5.7 65 259-329 318-394 (397)
175 PRK06849 hypothetical protein; 49.9 42 0.0009 32.0 6.1 35 6-46 3-37 (389)
176 TIGR02095 glgA glycogen/starch 49.0 28 0.00061 34.0 4.9 39 8-48 1-45 (473)
177 TIGR02149 glgA_Coryne glycogen 48.9 53 0.0012 30.6 6.7 30 259-293 300-329 (388)
178 COG1066 Sms Predicted ATP-depe 48.5 63 0.0014 31.3 6.8 88 10-101 96-216 (456)
179 PRK11823 DNA repair protein Ra 48.3 60 0.0013 31.8 7.0 90 10-102 83-205 (446)
180 TIGR01278 DPOR_BchB light-inde 48.3 83 0.0018 31.4 8.1 73 23-102 306-389 (511)
181 PRK06321 replicative DNA helic 48.3 93 0.002 30.8 8.3 37 10-48 229-266 (472)
182 PF04413 Glycos_transf_N: 3-De 47.5 56 0.0012 27.8 5.9 90 10-103 23-126 (186)
183 PRK13193 pyrrolidone-carboxyla 47.4 81 0.0018 27.5 6.9 62 8-81 1-67 (209)
184 cd00984 DnaB_C DnaB helicase C 47.0 1E+02 0.0022 26.9 7.8 38 10-49 16-54 (242)
185 COG1618 Predicted nucleotide k 46.8 1.4E+02 0.003 25.2 7.7 36 6-43 4-39 (179)
186 TIGR00236 wecB UDP-N-acetylglu 46.7 23 0.00051 33.2 3.8 30 259-293 289-318 (365)
187 PRK13196 pyrrolidone-carboxyla 46.6 69 0.0015 28.0 6.4 64 8-81 2-68 (211)
188 PRK13934 stationary phase surv 46.5 2.3E+02 0.0049 25.8 9.8 38 8-49 1-38 (266)
189 PHA02542 41 41 helicase; Provi 46.1 56 0.0012 32.3 6.4 38 10-49 193-230 (473)
190 PF00448 SRP54: SRP54-type pro 45.6 67 0.0014 27.6 6.1 39 10-50 4-42 (196)
191 PLN02316 synthase/transferase 45.3 24 0.00052 38.3 3.9 42 5-48 585-632 (1036)
192 PRK14569 D-alanyl-alanine synt 45.3 2E+02 0.0042 26.3 9.6 75 7-100 3-87 (296)
193 cd03822 GT1_ecORF704_like This 45.3 45 0.00098 30.3 5.5 61 259-326 289-362 (366)
194 cd01968 Nitrogenase_NifE_I Nit 44.9 97 0.0021 29.8 7.8 83 8-101 288-380 (410)
195 PF02844 GARS_N: Phosphoribosy 44.7 45 0.00098 25.4 4.3 85 8-99 1-90 (100)
196 TIGR03878 thermo_KaiC_2 KaiC d 44.7 2.3E+02 0.005 25.3 10.0 38 10-49 39-76 (259)
197 PRK11889 flhF flagellar biosyn 44.5 75 0.0016 30.9 6.7 40 8-49 242-281 (436)
198 cd03805 GT1_ALG2_like This fam 44.4 41 0.00089 31.5 5.1 51 238-293 280-348 (392)
199 PF02684 LpxB: Lipid-A-disacch 44.1 1.3E+02 0.0028 28.8 8.3 78 18-97 9-108 (373)
200 PRK05595 replicative DNA helic 44.1 96 0.0021 30.3 7.7 37 10-48 204-241 (444)
201 PRK13194 pyrrolidone-carboxyla 43.5 90 0.0019 27.2 6.6 64 8-81 1-67 (208)
202 PRK08334 translation initiatio 43.5 70 0.0015 30.3 6.3 18 87-104 264-281 (356)
203 PRK13789 phosphoribosylamine-- 43.0 58 0.0013 31.7 6.0 85 6-99 3-96 (426)
204 PRK08760 replicative DNA helic 42.7 1E+02 0.0022 30.6 7.6 37 10-48 232-269 (476)
205 PRK01077 cobyrinic acid a,c-di 42.4 2.2E+02 0.0047 27.9 9.9 92 9-105 5-124 (451)
206 PF03308 ArgK: ArgK protein; 42.4 1.2E+02 0.0026 27.5 7.3 39 6-46 28-66 (266)
207 PRK02910 light-independent pro 42.2 1.6E+02 0.0034 29.5 9.0 82 9-102 295-387 (519)
208 cd06318 PBP1_ABC_sugar_binding 42.2 2.3E+02 0.005 24.8 9.5 65 26-103 20-88 (282)
209 PF04127 DFP: DNA / pantothena 41.7 71 0.0015 27.2 5.6 21 25-47 33-53 (185)
210 KOG3062 RNA polymerase II elon 41.1 2E+02 0.0044 25.7 8.2 92 9-102 3-107 (281)
211 TIGR03088 stp2 sugar transfera 40.8 1.6E+02 0.0034 27.4 8.5 89 9-100 3-108 (374)
212 cd02071 MM_CoA_mut_B12_BD meth 40.8 1.7E+02 0.0037 22.7 9.9 36 9-46 1-36 (122)
213 PRK08506 replicative DNA helic 40.4 1.4E+02 0.0031 29.5 8.3 37 10-48 195-231 (472)
214 PRK00346 surE 5'(3')-nucleotid 40.2 2.8E+02 0.006 24.9 10.1 92 8-104 1-125 (250)
215 COG0381 WecB UDP-N-acetylgluco 39.7 2.8E+02 0.0061 26.6 9.6 95 7-103 3-124 (383)
216 cd01981 Pchlide_reductase_B Pc 39.4 1.3E+02 0.0027 29.2 7.7 73 23-102 312-395 (430)
217 TIGR03600 phage_DnaB phage rep 39.2 1.6E+02 0.0035 28.4 8.4 37 10-48 197-234 (421)
218 PRK11519 tyrosine kinase; Prov 39.1 1.6E+02 0.0036 30.7 8.9 38 7-46 525-564 (719)
219 cd03813 GT1_like_3 This family 38.5 52 0.0011 32.3 4.9 64 259-326 390-471 (475)
220 PRK06921 hypothetical protein; 38.3 74 0.0016 28.8 5.5 64 9-83 119-186 (266)
221 TIGR00416 sms DNA repair prote 37.6 1E+02 0.0022 30.4 6.7 90 10-102 97-219 (454)
222 PRK12726 flagellar biosynthesi 37.5 1.4E+02 0.0031 28.8 7.4 38 10-49 209-246 (407)
223 cd03799 GT1_amsK_like This is 37.4 57 0.0012 29.7 4.8 30 259-293 281-310 (355)
224 cd02037 MRP-like MRP (Multiple 37.3 2.1E+02 0.0045 23.4 7.8 71 12-85 5-78 (169)
225 TIGR00665 DnaB replicative DNA 37.3 1.7E+02 0.0037 28.3 8.3 38 10-49 198-236 (434)
226 cd03807 GT1_WbnK_like This fam 37.3 98 0.0021 27.7 6.4 64 259-327 288-362 (365)
227 PF01012 ETF: Electron transfe 37.3 1E+02 0.0022 25.3 5.8 42 62-103 78-122 (164)
228 PRK14478 nitrogenase molybdenu 37.0 99 0.0021 30.6 6.6 82 8-100 325-416 (475)
229 PRK04940 hypothetical protein; 36.9 1E+02 0.0022 26.3 5.7 49 59-107 43-94 (180)
230 PRK05636 replicative DNA helic 36.8 92 0.002 31.1 6.3 37 10-48 268-305 (505)
231 cd06297 PBP1_LacI_like_12 Liga 36.7 2.9E+02 0.0063 24.2 10.2 67 24-103 18-86 (269)
232 TIGR00087 surE 5'/3'-nucleotid 36.7 2.3E+02 0.0049 25.4 8.2 92 8-104 1-129 (244)
233 cd01714 ETF_beta The electron 36.5 1.3E+02 0.0029 25.8 6.6 41 62-102 96-142 (202)
234 COG0003 ArsA Predicted ATPase 36.1 2E+02 0.0043 27.0 8.0 37 8-46 2-39 (322)
235 PRK01372 ddl D-alanine--D-alan 36.1 1.9E+02 0.0042 26.2 8.1 75 7-100 4-87 (304)
236 PRK14098 glycogen synthase; Pr 36.0 66 0.0014 31.9 5.2 38 8-47 6-49 (489)
237 PF00070 Pyr_redox: Pyridine n 35.7 91 0.002 22.0 4.7 22 23-46 10-31 (80)
238 COG1058 CinA Predicted nucleot 35.6 88 0.0019 28.2 5.4 63 26-101 25-93 (255)
239 PRK13197 pyrrolidone-carboxyla 35.5 1.4E+02 0.003 26.1 6.6 64 8-81 2-68 (215)
240 cd03809 GT1_mtfB_like This fam 35.5 1.4E+02 0.0031 26.9 7.2 80 18-103 15-111 (365)
241 PRK06372 translation initiatio 35.4 32 0.00068 31.0 2.6 64 25-104 124-194 (253)
242 COG2086 FixA Electron transfer 35.4 1.7E+02 0.0036 26.5 7.2 83 19-103 33-146 (260)
243 cd01985 ETF The electron trans 35.3 1.1E+02 0.0025 25.4 6.0 42 63-104 80-124 (181)
244 PRK07206 hypothetical protein; 35.2 1.4E+02 0.003 28.6 7.3 81 9-97 4-95 (416)
245 cd03796 GT1_PIG-A_like This fa 35.0 96 0.0021 29.4 6.1 34 239-272 251-302 (398)
246 cd01540 PBP1_arabinose_binding 34.9 3.2E+02 0.0069 24.1 9.5 69 20-102 13-86 (289)
247 COG2874 FlaH Predicted ATPases 34.7 86 0.0019 27.7 5.0 30 17-48 38-67 (235)
248 COG4126 Hydantoin racemase [Am 34.5 2.9E+02 0.0064 24.3 8.2 91 10-104 4-100 (230)
249 PRK08939 primosomal protein Dn 34.4 1.5E+02 0.0033 27.4 7.1 64 9-83 158-226 (306)
250 PRK06371 translation initiatio 34.3 1.4E+02 0.0031 27.9 6.8 18 87-104 241-258 (329)
251 TIGR02472 sucr_P_syn_N sucrose 34.3 1.1E+02 0.0024 29.5 6.5 24 20-45 28-53 (439)
252 PF01656 CbiA: CobQ/CobB/MinD/ 34.0 2.6E+02 0.0056 23.0 8.0 33 12-46 4-36 (195)
253 cd03791 GT1_Glycogen_synthase_ 33.9 39 0.00085 32.9 3.2 25 22-48 20-44 (476)
254 PF08323 Glyco_transf_5: Starc 33.9 37 0.00081 30.2 2.8 23 22-46 20-42 (245)
255 cd01423 MGS_CPS_I_III Methylgl 33.6 32 0.0007 26.6 2.1 69 20-99 11-105 (116)
256 COG2185 Sbm Methylmalonyl-CoA 33.4 71 0.0015 26.1 4.0 38 5-44 10-47 (143)
257 PRK12377 putative replication 33.4 1.5E+02 0.0032 26.6 6.5 64 9-83 103-172 (248)
258 PF13419 HAD_2: Haloacid dehal 33.4 2.3E+02 0.0049 22.5 7.4 74 24-101 82-176 (176)
259 TIGR00379 cobB cobyrinic acid 33.3 4.7E+02 0.01 25.6 10.7 85 17-106 10-121 (449)
260 cd03792 GT1_Trehalose_phosphor 33.3 74 0.0016 29.7 4.9 66 259-329 293-369 (372)
261 PF08433 KTI12: Chromatin asso 33.3 2.4E+02 0.0051 25.6 7.9 92 10-105 4-107 (270)
262 cd01715 ETF_alpha The electron 33.2 2.1E+02 0.0047 23.5 7.2 44 61-104 70-116 (168)
263 cd06320 PBP1_allose_binding Pe 32.9 3.3E+02 0.0072 23.7 10.3 67 26-103 20-90 (275)
264 TIGR01425 SRP54_euk signal rec 32.8 1.3E+02 0.0028 29.4 6.5 39 9-49 102-140 (429)
265 PRK06036 translation initiatio 32.7 1.7E+02 0.0036 27.6 7.0 18 87-104 251-268 (339)
266 PRK15408 autoinducer 2-binding 32.7 4.1E+02 0.0089 24.7 11.0 86 7-104 23-114 (336)
267 PRK00994 F420-dependent methyl 32.6 3.2E+02 0.0069 24.5 8.1 88 9-106 4-98 (277)
268 PRK09165 replicative DNA helic 32.4 1.8E+02 0.004 28.9 7.7 38 10-49 220-272 (497)
269 PF07355 GRDB: Glycine/sarcosi 32.3 3.3E+02 0.0071 25.8 8.7 75 18-101 31-117 (349)
270 COG0052 RpsB Ribosomal protein 32.3 41 0.00089 30.1 2.7 32 75-106 157-190 (252)
271 cd01424 MGS_CPS_II Methylglyox 32.2 2.2E+02 0.0048 21.5 6.7 71 19-100 10-100 (110)
272 PRK14099 glycogen synthase; Pr 32.0 76 0.0017 31.4 4.9 40 6-47 2-47 (485)
273 PRK00311 panB 3-methyl-2-oxobu 32.0 2E+02 0.0044 26.1 7.2 47 246-294 58-115 (264)
274 PRK14089 ipid-A-disaccharide s 31.8 4.3E+02 0.0092 25.0 9.7 88 8-102 2-109 (347)
275 PRK10867 signal recognition pa 31.5 1.5E+02 0.0033 29.0 6.7 40 9-50 102-142 (433)
276 TIGR01283 nifE nitrogenase mol 31.4 1.4E+02 0.0031 29.2 6.7 72 25-102 339-420 (456)
277 cd03808 GT1_cap1E_like This fa 31.3 88 0.0019 27.9 5.0 30 259-293 283-312 (359)
278 PF09001 DUF1890: Domain of un 31.3 97 0.0021 25.1 4.4 76 22-101 14-100 (139)
279 COG1435 Tdk Thymidine kinase [ 31.3 3.5E+02 0.0076 23.4 9.0 93 8-102 4-117 (201)
280 cd03809 GT1_mtfB_like This fam 31.2 56 0.0012 29.6 3.7 34 238-271 253-304 (365)
281 PRK05772 translation initiatio 31.2 1.4E+02 0.0031 28.4 6.3 19 87-105 272-290 (363)
282 PRK07952 DNA replication prote 31.1 1.1E+02 0.0024 27.3 5.3 64 9-83 101-171 (244)
283 TIGR00460 fmt methionyl-tRNA f 31.0 85 0.0018 29.1 4.8 32 8-46 1-32 (313)
284 PRK08335 translation initiatio 30.9 44 0.00096 30.5 2.8 19 86-104 202-220 (275)
285 PRK07773 replicative DNA helic 30.9 2.1E+02 0.0046 30.8 8.3 37 10-48 220-257 (886)
286 COG2861 Uncharacterized protei 30.6 2.6E+02 0.0055 25.1 7.3 72 24-100 66-178 (250)
287 cd00501 Peptidase_C15 Pyroglut 30.5 2E+02 0.0044 24.4 6.8 64 8-81 1-67 (194)
288 cd01977 Nitrogenase_VFe_alpha 30.5 1.6E+02 0.0035 28.4 6.8 84 8-102 289-383 (415)
289 PRK06731 flhF flagellar biosyn 30.4 1.9E+02 0.004 26.3 6.8 39 8-48 76-114 (270)
290 PF00534 Glycos_transf_1: Glyc 30.2 86 0.0019 25.3 4.3 31 259-294 112-142 (172)
291 PRK14477 bifunctional nitrogen 30.2 1.9E+02 0.0042 31.3 7.8 84 8-102 321-414 (917)
292 PRK08535 translation initiatio 30.2 64 0.0014 29.9 3.8 19 86-104 213-231 (310)
293 PRK05748 replicative DNA helic 29.9 2.7E+02 0.0058 27.2 8.3 38 10-49 206-244 (448)
294 PRK08305 spoVFB dipicolinate s 29.8 68 0.0015 27.7 3.6 37 8-47 6-43 (196)
295 COG0299 PurN Folate-dependent 29.3 1.1E+02 0.0023 26.5 4.6 32 73-104 28-59 (200)
296 PF12038 DUF3524: Domain of un 29.1 3.4E+02 0.0073 22.8 7.4 86 8-102 1-90 (168)
297 PRK00771 signal recognition pa 28.9 2.1E+02 0.0046 28.0 7.3 40 8-49 96-135 (437)
298 PRK13982 bifunctional SbtC-lik 28.8 1E+02 0.0022 30.5 5.1 38 7-46 256-305 (475)
299 PRK05720 mtnA methylthioribose 28.7 1.9E+02 0.0042 27.3 6.8 19 86-104 250-268 (344)
300 PRK14974 cell division protein 28.6 2.2E+02 0.0048 26.7 7.1 38 9-48 142-179 (336)
301 PRK00025 lpxB lipid-A-disaccha 28.5 70 0.0015 29.9 3.9 13 259-271 276-288 (380)
302 TIGR03499 FlhF flagellar biosy 28.4 2.1E+02 0.0045 26.0 6.8 38 10-49 197-236 (282)
303 cd06323 PBP1_ribose_binding Pe 28.4 3.8E+02 0.0083 23.0 8.9 79 12-103 5-88 (268)
304 COG0771 MurD UDP-N-acetylmuram 28.4 2.5E+02 0.0055 27.6 7.6 87 6-99 6-97 (448)
305 PRK09435 membrane ATPase/prote 28.4 3.4E+02 0.0074 25.5 8.3 39 7-47 56-94 (332)
306 PRK09302 circadian clock prote 28.3 2.9E+02 0.0063 27.4 8.4 38 9-48 275-312 (509)
307 COG0541 Ffh Signal recognition 28.3 2.1E+02 0.0046 27.9 6.9 41 8-50 101-141 (451)
308 PF12146 Hydrolase_4: Putative 28.3 1.1E+02 0.0023 22.0 3.9 33 9-43 17-49 (79)
309 PF06506 PrpR_N: Propionate ca 28.0 86 0.0019 26.2 4.0 43 61-107 113-155 (176)
310 PF07015 VirC1: VirC1 protein; 27.8 2.5E+02 0.0055 24.9 6.9 34 14-49 9-42 (231)
311 cd04951 GT1_WbdM_like This fam 27.8 99 0.0021 28.1 4.7 30 259-293 282-311 (360)
312 PRK05989 cobN cobaltochelatase 27.6 3.5E+02 0.0077 30.4 9.4 86 8-104 202-296 (1244)
313 PRK10125 putative glycosyl tra 27.5 3.4E+02 0.0074 26.0 8.5 38 8-47 1-40 (405)
314 PLN02939 transferase, transfer 27.5 1.1E+02 0.0025 32.9 5.4 42 5-48 479-526 (977)
315 COG0182 Predicted translation 26.9 2E+02 0.0044 26.9 6.3 20 87-106 254-273 (346)
316 TIGR00959 ffh signal recogniti 26.9 1.8E+02 0.0039 28.4 6.3 38 10-49 102-140 (428)
317 cd00316 Oxidoreductase_nitroge 26.8 2.1E+02 0.0046 27.0 6.9 72 23-102 290-373 (399)
318 cd03794 GT1_wbuB_like This fam 26.8 90 0.002 28.2 4.2 30 259-293 319-348 (394)
319 TIGR00512 salvage_mtnA S-methy 26.7 2.4E+02 0.0052 26.5 6.9 20 86-105 250-269 (331)
320 cd02065 B12-binding_like B12 b 26.6 2.9E+02 0.0062 20.9 7.4 34 10-45 2-35 (125)
321 KOG4061 DMQ mono-oxygenase/Ubi 26.0 1.6E+02 0.0036 24.9 5.0 43 245-294 67-130 (217)
322 PRK07313 phosphopantothenoylcy 26.0 82 0.0018 26.7 3.5 36 8-46 2-37 (182)
323 cd06294 PBP1_ycjW_transcriptio 26.0 4.3E+02 0.0093 22.8 9.6 66 25-103 24-91 (270)
324 TIGR02852 spore_dpaB dipicolin 26.0 81 0.0017 27.0 3.4 36 9-46 2-37 (187)
325 cd06283 PBP1_RegR_EndR_KdgR_li 26.0 4.2E+02 0.0092 22.7 9.3 79 12-103 5-86 (267)
326 TIGR03492 conserved hypothetic 26.0 2.2E+02 0.0047 27.3 6.8 84 17-103 6-121 (396)
327 PRK10422 lipopolysaccharide co 25.7 2.1E+02 0.0045 26.7 6.5 88 9-103 185-289 (352)
328 TIGR01862 N2-ase-Ialpha nitrog 25.5 2.3E+02 0.005 27.7 6.9 71 26-102 331-412 (443)
329 cd01018 ZntC Metal binding pro 25.4 2.1E+02 0.0046 25.6 6.3 36 70-105 213-250 (266)
330 TIGR00524 eIF-2B_rel eIF-2B al 25.4 2.2E+02 0.0048 26.3 6.4 18 87-104 223-240 (303)
331 CHL00076 chlB photochlorophyll 25.4 88 0.0019 31.3 4.1 30 70-102 370-399 (513)
332 COG0151 PurD Phosphoribosylami 25.4 2.8E+02 0.0062 26.9 7.2 84 8-98 1-90 (428)
333 KOG1344 Predicted histone deac 25.3 3.1E+02 0.0066 24.5 6.8 76 19-105 204-301 (324)
334 PRK11199 tyrA bifunctional cho 25.1 4.1E+02 0.0088 25.3 8.4 32 7-45 98-130 (374)
335 cd00983 recA RecA is a bacter 25.0 2.2E+02 0.0048 26.7 6.4 74 10-85 58-144 (325)
336 PRK10916 ADP-heptose:LPS hepto 25.0 2.2E+02 0.0047 26.5 6.5 88 9-103 182-288 (348)
337 cd02032 Bchl_like This family 25.0 1.1E+02 0.0025 27.2 4.4 37 8-46 1-37 (267)
338 PF00551 Formyl_trans_N: Formy 25.0 4.1E+02 0.0089 22.2 10.8 92 8-104 1-110 (181)
339 cd01124 KaiC KaiC is a circadi 25.0 2.9E+02 0.0063 22.6 6.7 38 10-49 2-39 (187)
340 TIGR00511 ribulose_e2b2 ribose 24.9 56 0.0012 30.2 2.4 19 86-104 208-226 (301)
341 PLN02501 digalactosyldiacylgly 24.9 5.1E+02 0.011 27.4 9.2 38 7-46 322-364 (794)
342 PRK14476 nitrogenase molybdenu 24.5 1.9E+02 0.0042 28.4 6.2 78 8-101 312-395 (455)
343 cd06316 PBP1_ABC_sugar_binding 24.4 5E+02 0.011 23.0 10.2 79 13-103 6-89 (294)
344 TIGR01205 D_ala_D_alaTIGR D-al 24.3 2.6E+02 0.0056 25.4 6.8 72 21-100 17-94 (315)
345 PRK13558 bacterio-opsin activa 24.0 3.4E+02 0.0074 27.7 8.2 81 1-104 1-88 (665)
346 cd06305 PBP1_methylthioribose_ 24.0 4.7E+02 0.01 22.6 9.8 67 24-103 18-88 (273)
347 cd03820 GT1_amsD_like This fam 23.9 1.2E+02 0.0025 26.9 4.4 31 259-294 272-303 (348)
348 COG4671 Predicted glycosyl tra 23.9 77 0.0017 30.1 3.0 43 5-49 7-53 (400)
349 PF00391 PEP-utilizers: PEP-ut 23.8 1.3E+02 0.0028 21.6 3.7 29 74-102 30-60 (80)
350 TIGR00750 lao LAO/AO transport 23.8 5.2E+02 0.011 23.6 8.6 37 8-46 35-71 (300)
351 cd06271 PBP1_AglR_RafR_like Li 23.5 4.7E+02 0.01 22.4 8.3 66 24-102 22-89 (268)
352 TIGR00504 pyro_pdase pyrogluta 23.3 2.5E+02 0.0054 24.5 6.1 50 20-81 14-65 (212)
353 TIGR02237 recomb_radB DNA repa 23.2 4.1E+02 0.009 22.4 7.5 36 10-47 15-50 (209)
354 PF07894 DUF1669: Protein of u 23.1 1.3E+02 0.0028 27.6 4.3 43 59-101 132-180 (284)
355 TIGR02195 heptsyl_trn_II lipop 23.1 2.3E+02 0.0049 26.1 6.2 90 8-104 175-279 (334)
356 PLN02778 3,5-epimerase/4-reduc 23.1 2.5E+02 0.0054 25.5 6.4 37 1-43 1-39 (298)
357 PRK15490 Vi polysaccharide bio 22.8 1.6E+02 0.0036 29.8 5.3 66 259-329 492-573 (578)
358 PRK05632 phosphate acetyltrans 22.7 8.5E+02 0.018 25.3 10.8 95 9-105 4-116 (684)
359 COG0162 TyrS Tyrosyl-tRNA synt 22.6 88 0.0019 30.2 3.3 36 8-46 35-73 (401)
360 cd04950 GT1_like_1 Glycosyltra 22.6 2.6E+02 0.0056 26.2 6.6 28 19-48 17-44 (373)
361 COG0223 Fmt Methionyl-tRNA for 22.5 3.9E+02 0.0084 24.9 7.3 33 7-46 1-33 (307)
362 COG0552 FtsY Signal recognitio 22.3 3.4E+02 0.0075 25.5 6.9 85 8-105 140-231 (340)
363 PF02350 Epimerase_2: UDP-N-ac 22.3 1.3E+02 0.0029 28.2 4.4 32 73-104 66-100 (346)
364 TIGR03880 KaiC_arch_3 KaiC dom 22.1 3.7E+02 0.008 23.1 7.0 37 10-48 19-55 (224)
365 cd06295 PBP1_CelR Ligand bindi 22.1 5.3E+02 0.011 22.4 8.5 63 26-103 31-95 (275)
366 PF02603 Hpr_kinase_N: HPr Ser 22.0 1.7E+02 0.0038 23.0 4.5 40 64-103 72-113 (127)
367 cd01545 PBP1_SalR Ligand-bindi 21.7 5.2E+02 0.011 22.2 9.5 80 12-103 5-88 (270)
368 PF04321 RmlD_sub_bind: RmlD s 21.6 6E+02 0.013 22.9 9.9 82 8-105 1-103 (286)
369 TIGR01281 DPOR_bchL light-inde 21.3 1.5E+02 0.0033 26.3 4.5 36 8-45 1-36 (268)
370 PRK09219 xanthine phosphoribos 21.2 2.6E+02 0.0057 23.8 5.7 32 71-102 47-80 (189)
371 PRK12321 cobN cobaltochelatase 21.1 6.4E+02 0.014 28.0 9.7 76 18-104 212-291 (1100)
372 PRK10017 colanic acid biosynth 20.9 1.3E+02 0.0028 29.4 4.1 39 8-46 1-42 (426)
373 PF02514 CobN-Mg_chel: CobN/Ma 20.9 6E+02 0.013 28.2 9.5 89 6-104 70-168 (1098)
374 COG2039 Pcp Pyrrolidone-carbox 20.9 4.1E+02 0.0088 23.0 6.5 61 9-81 2-67 (207)
375 PRK09841 cryptic autophosphory 20.7 5.2E+02 0.011 27.1 8.8 38 7-46 530-569 (726)
376 PF06032 DUF917: Protein of un 20.7 1.8E+02 0.0038 27.6 4.9 85 14-100 17-121 (353)
377 cd06315 PBP1_ABC_sugar_binding 20.6 5.9E+02 0.013 22.4 9.0 65 26-103 21-89 (280)
378 PRK06526 transposase; Provisio 20.6 2.3E+02 0.005 25.4 5.4 66 8-84 99-169 (254)
379 PRK08181 transposase; Validate 20.6 3.6E+02 0.0079 24.4 6.7 65 8-83 107-176 (269)
380 COG1663 LpxK Tetraacyldisaccha 20.5 4.9E+02 0.011 24.5 7.6 34 13-48 55-88 (336)
381 PRK06249 2-dehydropantoate 2-r 20.4 1.2E+02 0.0026 27.9 3.7 34 6-46 4-37 (313)
382 smart00526 H15 Domain in histo 20.4 1.2E+02 0.0027 20.7 2.9 16 313-328 20-35 (66)
383 PF00148 Oxidored_nitro: Nitro 20.2 3E+02 0.0066 26.1 6.6 81 8-102 272-366 (398)
384 cd01542 PBP1_TreR_like Ligand- 20.2 5.5E+02 0.012 21.9 7.9 67 23-102 17-85 (259)
385 cd06306 PBP1_TorT-like TorT-li 20.0 5.9E+02 0.013 22.2 9.9 66 26-102 20-88 (268)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4e-57 Score=436.32 Aligned_cols=316 Identities=24% Similarity=0.346 Sum_probs=242.7
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-------c---------h-----------
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-------G---------Q----------- 53 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-------~---------p----------- 53 (331)
|++...+.|++++|+|++||++||++||++|+.|| +.|||++++.+... . |
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G--~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~ 78 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKG--FSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIE 78 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCC--CEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHH
Confidence 88888889999999999999999999999999999 99999998765311 1 1
Q ss_pred HH----HhhhHHHHHHHHHhhc--CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccccc--------
Q 039208 54 LA----LLNSPNLHKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTY-------- 119 (331)
Q Consensus 54 ~~----~~~~~~l~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~-------- 119 (331)
++ +.+.+.++++++++.. ..+++|||+|.|+.|+.++|+++|||++.|++++++..+.+++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 158 (451)
T PLN02410 79 FLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPL 158 (451)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCc
Confidence 11 1233445555555432 346799999999999999999999999999999998887665432110
Q ss_pred -C---CCC-CCC--------CCCcccc---------------------ccCCCC---C--------C-CCCCeEEeccCC
Q 039208 120 -G---TTN-GLK--------DPQMVLD---------------------IPCVPY---G--------E-QMPPLYCTGAIL 153 (331)
Q Consensus 120 -~---~~~-~~~--------~l~~~~~---------------------~p~~~~---~--------~-~~p~~~~vGp~~ 153 (331)
+ ... .+. +++.... +-+|++ + . ..+++++|||++
T Consensus 159 ~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~ 238 (451)
T PLN02410 159 KEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLH 238 (451)
T ss_pred cccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccc
Confidence 0 000 011 1221000 003433 1 1 236899999997
Q ss_pred CCCCCC-C-CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhch
Q 039208 154 AATTSD-N-KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADA 219 (331)
Q Consensus 154 ~~~~~~-~-~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~ 219 (331)
...... . ...+.+|.+|||+++++||||||| +++.||+.++++|||+++....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~------------ 306 (451)
T PLN02410 239 LVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR------------ 306 (451)
T ss_pred cccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc------------
Confidence 542111 1 122356999999999999999999 89999999999999999953110
Q ss_pred hhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhh
Q 039208 220 EASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKI 286 (331)
Q Consensus 220 ~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~l 286 (331)
+.+....+|++|+||++++|+++ +|+||.+||+|++++ |+++|||||+||+++||+.||+++++.|
T Consensus 307 ~~~~~~~lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 307 GSEWIESLPKEFSKIISGRGYIV-KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred ccchhhcCChhHHHhccCCeEEE-ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 00111248999999999999888 999999999999997 9999999999999999999999999989
Q ss_pred ccceeehh-----------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 287 RDPLTVAE-----------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 287 GvG~~l~~-----------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
|+|+++.. +++|+ ||+++++++++|+++||||++|+++||++++.
T Consensus 386 ~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 386 KIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999842 56662 99999999999999999999999999999863
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.9e-56 Score=430.48 Aligned_cols=319 Identities=28% Similarity=0.483 Sum_probs=235.5
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCCCCc----------c-----hH---------------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFPTLR----------G-----QL--------------- 54 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~~~~----------~-----p~--------------- 54 (331)
.++|++++|+|++||++||++||+.|+ ++| ++|||++++..... . |.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g--~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~~ 81 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHG--FHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVVT 81 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCC--cEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHHH
Confidence 457999999999999999999999998 799 99999998854210 0 10
Q ss_pred -----HHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC--------
Q 039208 55 -----ALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT-------- 121 (331)
Q Consensus 55 -----~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~-------- 121 (331)
+..+.+.++++++++ ..+++|||+|.|+.|+..+|+++|||++.|++++++.++.+.+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQ 159 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccC
Confidence 111223334444332 24789999999999999999999999999999999888776655422110
Q ss_pred --CCCCC--------CCCcccccc----------------------CCCC---C--------CC-------CCCeEEecc
Q 039208 122 --TNGLK--------DPQMVLDIP----------------------CVPY---G--------EQ-------MPPLYCTGA 151 (331)
Q Consensus 122 --~~~~~--------~l~~~~~~p----------------------~~~~---~--------~~-------~p~~~~vGp 151 (331)
...+. +++..+..+ +|++ + .. .+++|+|||
T Consensus 160 ~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGP 239 (481)
T PLN02992 160 RKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGP 239 (481)
T ss_pred CCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecC
Confidence 00011 222100000 3433 1 10 257999999
Q ss_pred CCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhch
Q 039208 152 ILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADA 219 (331)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~ 219 (331)
++.... ....+++|.+|||+++++||||||| +|+.||+.++++|||+++++...+....+++..++
T Consensus 240 l~~~~~--~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~ 317 (481)
T PLN02992 240 LCRPIQ--SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGG 317 (481)
T ss_pred ccCCcC--CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCccc
Confidence 975321 1123567999999999899999999 89999999999999999854110000000100000
Q ss_pred --hhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHh
Q 039208 220 --EASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVE 284 (331)
Q Consensus 220 --~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~ 284 (331)
..+....+|++|.||++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||+++++
T Consensus 318 ~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~ 397 (481)
T PLN02992 318 ETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSD 397 (481)
T ss_pred ccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHH
Confidence 001123589999999999999999999999999999997 99999999999999999999999975
Q ss_pred hhccceeehh--------------hHHHH---------hHHHHHHHHHHHHh--cCCChHHHHHHHHHHHh
Q 039208 285 KIRDPLTVAE--------------RRVIE---------GIRAPKEQAVGALS--EGGRSLAVVAELAESFR 330 (331)
Q Consensus 285 ~lGvG~~l~~--------------~~lm~---------~a~~l~~~~~~a~~--~ggss~~~l~~~v~~~~ 330 (331)
+||+|++++. +++|+ ||+++++++++|+. +||||++|+++||++++
T Consensus 398 ~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 398 ELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred HhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 5899999842 55662 99999999999994 69999999999999875
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-55 Score=426.51 Aligned_cols=313 Identities=24% Similarity=0.410 Sum_probs=237.0
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------c-------h-------------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR----------G-------Q------------- 53 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~----------~-------p------------- 53 (331)
..+++|++++|+|++||++||++||+.|+.+| +.|||++++.+... . |
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G--~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRG--LTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 56679999999999999999999999999999 99999998865310 0 0
Q ss_pred --------HHHhhhHHHHHHHHHhhc--CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccccc----
Q 039208 54 --------LALLNSPNLHKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTY---- 119 (331)
Q Consensus 54 --------~~~~~~~~l~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~---- 119 (331)
.+..+...+.+.+.++++ ..+++|||+|.|++|+.++|+++|||++.|++++++.++.+++++...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~ 163 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKI 163 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccc
Confidence 011111122222222332 246799999999999999999999999999999999998877643210
Q ss_pred ---CC--C-----C------CCCCCCcccc------------------------ccCCCC-----------CC-CC-CCe
Q 039208 120 ---GT--T-----N------GLKDPQMVLD------------------------IPCVPY-----------GE-QM-PPL 146 (331)
Q Consensus 120 ---~~--~-----~------~~~~l~~~~~------------------------~p~~~~-----------~~-~~-p~~ 146 (331)
+. . . ++.+++..+. +-+|++ .. .. +++
T Consensus 164 ~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v 243 (477)
T PLN02863 164 NPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRV 243 (477)
T ss_pred cccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCe
Confidence 00 0 0 0112221000 002333 11 12 679
Q ss_pred EEeccCCCCCCCC------CC---CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCC
Q 039208 147 YCTGAILAATTSD------NK---NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPP 205 (331)
Q Consensus 147 ~~vGp~~~~~~~~------~~---~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~ 205 (331)
|+|||++...... +. ..+++|.+|||+++++||||||| +++.||++++++|||+++.+.
T Consensus 244 ~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~ 323 (477)
T PLN02863 244 WAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPV 323 (477)
T ss_pred EEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCc
Confidence 9999997532100 01 12457999999999999999999 899999999999999998642
Q ss_pred CchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccc
Q 039208 206 LEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSN 272 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~ 272 (331)
.. ......+|++|.+|++++|+++.+|+||.+||+|++++ |+++|||||+||++
T Consensus 324 ~~-------------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 390 (477)
T PLN02863 324 NE-------------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA 390 (477)
T ss_pred cc-------------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 10 00123589999999999999998999999999999987 99999999999999
Q ss_pred cchhhhHHHHHhhhccceeehh---------------hHHHH-------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 273 GDQMVNMAFLVEKIRDPLTVAE---------------RRVIE-------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 273 ~DQ~~na~~v~~~lGvG~~l~~---------------~~lm~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+||+.||++++++||+|+++.. +++|. ||+++++++++|+++||||++|+++||++++
T Consensus 391 ~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 391 ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 9999999999887999998821 44552 9999999999999999999999999999986
Q ss_pred C
Q 039208 331 K 331 (331)
Q Consensus 331 ~ 331 (331)
+
T Consensus 471 ~ 471 (477)
T PLN02863 471 E 471 (477)
T ss_pred H
Confidence 4
No 4
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-55 Score=423.26 Aligned_cols=313 Identities=29% Similarity=0.511 Sum_probs=233.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCC---------------cc-----h------H----
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTL---------------RG-----Q------L---- 54 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~---------------~~-----p------~---- 54 (331)
.++|++++|+|++||++||++||+.|+++ | ..|||+++..... .. | +
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC
Confidence 35699999999999999999999999987 9 9999998663221 01 1 0
Q ss_pred ----------HHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCC-eEEEecccHHHHHHHhhcccccC---
Q 039208 55 ----------ALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIP-TYLFYASSASALAQVLYLPNTYG--- 120 (331)
Q Consensus 55 ----------~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP-~v~~~~~~~~~~~~~~~~~~~~~--- 120 (331)
++.+.+.++++++++ ..+++|||+|.|++|+.++|+++||| .+.|++++++....+++++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSM--KRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhc--CCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 111233334444333 23689999999999999999999999 58888888887766666542210
Q ss_pred C---C--CC--CC--------CCCccc-c---------------cc------CCCC---C--------CC-------CCC
Q 039208 121 T---T--NG--LK--------DPQMVL-D---------------IP------CVPY---G--------EQ-------MPP 145 (331)
Q Consensus 121 ~---~--~~--~~--------~l~~~~-~---------------~p------~~~~---~--------~~-------~p~ 145 (331)
. . .+ +. +++... . .. +|++ + .. .++
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~ 237 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVP 237 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCc
Confidence 0 0 00 11 111100 0 00 3433 1 11 257
Q ss_pred eEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhh
Q 039208 146 LYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQT 213 (331)
Q Consensus 146 ~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~ 213 (331)
+|+|||++.... ....+++|.+|||+++++||||||| ||+.||+.++++|||+++.+...
T Consensus 238 v~~VGPl~~~~~--~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~------ 309 (470)
T PLN03015 238 VYPIGPIVRTNV--HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASY------ 309 (470)
T ss_pred eEEecCCCCCcc--cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccc------
Confidence 999999974321 1122457999999999999999999 99999999999999999864210
Q ss_pred hh-hhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhH
Q 039208 214 LT-VADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNM 279 (331)
Q Consensus 214 ~~-~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na 279 (331)
.+ ...++.+....+|++|.+|++++|+++.+|+||.+||+|++|+ |+++|||||+||+++||+.||
T Consensus 310 ~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na 389 (470)
T PLN03015 310 LGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNA 389 (470)
T ss_pred cccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHH
Confidence 00 0000011123699999999999999988999999999999998 999999999999999999999
Q ss_pred HHHHhhhccceeeh-----h-----------hHHH----H-------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 280 AFLVEKIRDPLTVA-----E-----------RRVI----E-------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 280 ~~v~~~lGvG~~l~-----~-----------~~lm----~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+++++.||+|+++. . +++| + ||+++++++++|+++||||++|+++|+++++
T Consensus 390 ~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 390 TLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 99988899999994 1 7788 2 9999999999999999999999999998864
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-55 Score=421.64 Aligned_cols=310 Identities=24% Similarity=0.462 Sum_probs=235.2
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC-----------c----c-----h------------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-----------R----G-----Q------------ 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~-----------~----~-----p------------ 53 (331)
.+.|++++|+|++||++||++||+.|+.||+...|||++++.+.+ . . |
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 357999999999999999999999999987447899998875431 0 0 1
Q ss_pred ----H----HHhhhHHHHHHHHHhhc----C-CCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccC
Q 039208 54 ----L----ALLNSPNLHKTLIIQSK----T-SNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYG 120 (331)
Q Consensus 54 ----~----~~~~~~~l~~~l~~l~~----~-~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 120 (331)
+ ++.+.+.+++.++++++ + .+++|||+|.|++|+.++|+++|||++.|++++++..+.+++++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 0 11122222334444432 1 245999999999999999999999999999999988887766543211
Q ss_pred C----------CC-CCCCC---------Ccccc----c----------c------CCCC---C---------C-CCCCeE
Q 039208 121 T----------TN-GLKDP---------QMVLD----I----------P------CVPY---G---------E-QMPPLY 147 (331)
Q Consensus 121 ~----------~~-~~~~l---------~~~~~----~----------p------~~~~---~---------~-~~p~~~ 147 (331)
. .. .+.++ +.... . . +|++ + + ..|+++
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~ 241 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVY 241 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEE
Confidence 0 00 01111 11000 0 0 2333 1 1 246899
Q ss_pred EeccCCCCCCCCCC----CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhh
Q 039208 148 CTGAILAATTSDNK----NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFR 211 (331)
Q Consensus 148 ~vGp~~~~~~~~~~----~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~ 211 (331)
+|||++........ ..+++|.+|||+++++||||||| +++.||+.++++|||+++++..
T Consensus 242 ~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~----- 316 (468)
T PLN02207 242 AVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV----- 316 (468)
T ss_pred EecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc-----
Confidence 99999764311110 12357999999999899999999 8999999999999999996421
Q ss_pred hhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhh
Q 039208 212 QTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVN 278 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~n 278 (331)
+....+|++|++|++++|+++ +|+||.+||+|+++| |+++|||||+||+++||+.|
T Consensus 317 ----------~~~~~lp~~f~er~~~~g~i~-~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N 385 (468)
T PLN02207 317 ----------TNDDLLPEGFLDRVSGRGMIC-GWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLN 385 (468)
T ss_pred ----------cccccCCHHHHhhcCCCeEEE-EeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhh
Confidence 012359999999999999777 999999999999997 99999999999999999999
Q ss_pred HHHHHhhhccceeeh------------h-------hHHHH--------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 279 MAFLVEKIRDPLTVA------------E-------RRVIE--------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 279 a~~v~~~lGvG~~l~------------~-------~~lm~--------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
|+++++.||+|+++. . +++|+ ||+++++++++|+++||||++|+++||++++.
T Consensus 386 a~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 386 AFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999998899999651 1 67773 99999999999999999999999999999863
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1e-54 Score=423.32 Aligned_cols=318 Identities=31% Similarity=0.537 Sum_probs=237.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCC--ceEEEEEeCCCCCC------------------cc-----h-------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYP--YFSVTIIISTFPTL------------------RG-----Q------- 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~--~h~Vt~~~~~~~~~------------------~~-----p------- 53 (331)
.+.|++++|+|++||++||++||+.|+.||+ .+.|||++++.+.+ .. |
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 4679999999999999999999999999852 17899999764311 01 1
Q ss_pred ------HH----HhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCC-
Q 039208 54 ------LA----LLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTT- 122 (331)
Q Consensus 54 ------~~----~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~- 122 (331)
++ +.+.+.++++++++ ..+++|||+|.|+.|+.++|+++|||++.|++++++..+.+++++...+..
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l--~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 159 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGL--SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVA 159 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhc--CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccccc
Confidence 11 12333344444433 235799999999999999999999999999999999988887765322110
Q ss_pred -------C--CCC--------CCCcccc------c----------c------CCCC-----------CCC-------CCC
Q 039208 123 -------N--GLK--------DPQMVLD------I----------P------CVPY-----------GEQ-------MPP 145 (331)
Q Consensus 123 -------~--~~~--------~l~~~~~------~----------p------~~~~-----------~~~-------~p~ 145 (331)
. .+. +++.... . . +|++ ... .++
T Consensus 160 ~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~ 239 (480)
T PLN00164 160 VEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPT 239 (480)
T ss_pred CcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCc
Confidence 0 011 2221000 0 0 2333 011 257
Q ss_pred eEEeccCCCCCC-CCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhh
Q 039208 146 LYCTGAILAATT-SDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQ 212 (331)
Q Consensus 146 ~~~vGp~~~~~~-~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~ 212 (331)
+|+|||++.... ......+.+|.+|||+++++||||||| +++.||++++++|||+++.+...+.
T Consensus 240 v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~--- 316 (480)
T PLN00164 240 VYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGS--- 316 (480)
T ss_pred eEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCccccc---
Confidence 999999974221 111124567999999999999999999 8999999999999999996421000
Q ss_pred hhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhH
Q 039208 213 TLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNM 279 (331)
Q Consensus 213 ~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na 279 (331)
+ ...+.+....+|++|.+|++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||
T Consensus 317 -~--~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (480)
T PLN00164 317 -R--HPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNA 393 (480)
T ss_pred -c--cccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHH
Confidence 0 000001123589999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHhhhccceeeh----------h-------hHHHH-----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 280 AFLVEKIRDPLTVA----------E-------RRVIE-----------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 280 ~~v~~~lGvG~~l~----------~-------~~lm~-----------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
++++++||+|+++. . +++|. ||+++++++++|+++||||++||++||+++++
T Consensus 394 ~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 394 FELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 99987799999873 1 56661 99999999999999999999999999999864
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-54 Score=417.33 Aligned_cols=301 Identities=23% Similarity=0.383 Sum_probs=227.9
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--------c---------h------------HH--
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--------G---------Q------------LA-- 55 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--------~---------p------------~~-- 55 (331)
+.|++++|+|++||++||++||++|+.+| +.|||++++.+.+. . | ++
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G--~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKG--FKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCC--CEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 36999999999999999999999999999 99999998754211 0 1 11
Q ss_pred --HhhhHHHHHHHHHhhcC-CCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccC-CCC--------
Q 039208 56 --LLNSPNLHKTLIIQSKT-SNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYG-TTN-------- 123 (331)
Q Consensus 56 --~~~~~~l~~~l~~l~~~-~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~-~~~-------- 123 (331)
+.+.+.++++++++..+ .+++|||+|.|+.|+.++|+++|||++.|++++++....+++. .... ...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~~~~~~~~~pg~p~ 161 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YINNGSLTLPIKDLPL 161 (449)
T ss_pred HHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-HhccCCccCCCCCCCC
Confidence 12344555555544222 3359999999999999999999999999999988877655431 1110 000
Q ss_pred -CCCCCCcccc------------------------ccCCCC---C-------CCCCCeEEeccCCCCC-------CCCC-
Q 039208 124 -GLKDPQMVLD------------------------IPCVPY---G-------EQMPPLYCTGAILAAT-------TSDN- 160 (331)
Q Consensus 124 -~~~~l~~~~~------------------------~p~~~~---~-------~~~p~~~~vGp~~~~~-------~~~~- 160 (331)
...+++..+. +-+|++ + +..+++|+|||+++.. ....
T Consensus 162 l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~ 241 (449)
T PLN02173 162 LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDNDY 241 (449)
T ss_pred CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhccccccccccc
Confidence 0112221000 003433 1 1124799999997421 0000
Q ss_pred C------CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhh
Q 039208 161 K------NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEAS 222 (331)
Q Consensus 161 ~------~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~ 222 (331)
. ..+++|.+|||+++++||||||| +++.|| ++++|+|+++.+.
T Consensus 242 ~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~----------------- 302 (449)
T PLN02173 242 DLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE----------------- 302 (449)
T ss_pred cccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc-----------------
Confidence 0 12345999999999999999999 899998 7899999998641
Q ss_pred hhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccc
Q 039208 223 AELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDP 289 (331)
Q Consensus 223 ~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG 289 (331)
...+|++|++|++++|+++.+|+||.+||+|++|+ |+++|||||+||+++||+.||+++++.||+|
T Consensus 303 -~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~G 381 (449)
T PLN02173 303 -ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVG 381 (449)
T ss_pred -hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCce
Confidence 12489999999976766666999999999999988 9999999999999999999999999989999
Q ss_pred eeehh----------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 290 LTVAE----------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 290 ~~l~~----------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+++.. +++|+ ||+++++++++|+++||||++|+++||++++
T Consensus 382 v~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 382 VRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99831 66773 9999999999999999999999999999874
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.6e-54 Score=413.24 Aligned_cols=315 Identities=22% Similarity=0.304 Sum_probs=234.1
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCC-CC----------cc---------h------------
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFP-TL----------RG---------Q------------ 53 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~-~~----------~~---------p------------ 53 (331)
+.|++++|+|++||++||++||+.|++ +| +.|||++++.. .. .. |
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G--~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~ 80 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTG--TRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQN 80 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCC--cEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHH
Confidence 469999999999999999999999996 79 99999998742 11 00 1
Q ss_pred ----HHHhhhHHHHHHHHHhhc-CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC---CC--
Q 039208 54 ----LALLNSPNLHKTLIIQSK-TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT---TN-- 123 (331)
Q Consensus 54 ----~~~~~~~~l~~~l~~l~~-~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~---~~-- 123 (331)
..+.+.+.++++++++.. ..+++|||+|.+++|+.++|+++|||++.|++++++..+.+++++...+. ..
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPgl 160 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNL 160 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCC
Confidence 112334555666665532 24579999999999999999999999999999999998877665321110 00
Q ss_pred ---CCCCCCccc--------------------------cccCCCC---C-----CC-CCCeEEeccCCCCCC---CC-CC
Q 039208 124 ---GLKDPQMVL--------------------------DIPCVPY---G-----EQ-MPPLYCTGAILAATT---SD-NK 161 (331)
Q Consensus 124 ---~~~~l~~~~--------------------------~~p~~~~---~-----~~-~p~~~~vGp~~~~~~---~~-~~ 161 (331)
...+++..+ .+-+|++ + .. ..++|+|||+++... .. +.
T Consensus 161 p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~~~~~~~~ 240 (455)
T PLN02152 161 PSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIFTGSESGK 240 (455)
T ss_pred CCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCccccccccccCc
Confidence 111222110 0003333 1 11 136999999975320 00 11
Q ss_pred -----CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhh
Q 039208 162 -----NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAE 224 (331)
Q Consensus 162 -----~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (331)
..+.+|.+|||+++++||||||| +|+.||+.++++|||+++++...+. ..+.+.+..
T Consensus 241 ~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~------~~~~~~~~~ 314 (455)
T PLN02152 241 DLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREA------KIEGEEETE 314 (455)
T ss_pred cccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccc------ccccccccc
Confidence 12357999999999899999999 8999999999999999986411000 000000001
Q ss_pred ccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhcccee
Q 039208 225 LFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLT 291 (331)
Q Consensus 225 ~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~ 291 (331)
..+|++|.||++++|+++ +|+||.+||+|++|+ |+++|||||+||+++||+.||+++++.||+|+.
T Consensus 315 ~~~~~~f~e~~~~~g~v~-~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 393 (455)
T PLN02152 315 IEKIAGFRHELEEVGMIV-SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVR 393 (455)
T ss_pred cccchhHHHhccCCeEEE-eeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEE
Confidence 135899999999999777 999999999999997 999999999999999999999999998888888
Q ss_pred ehh---------------hHHHH--------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 292 VAE---------------RRVIE--------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 292 l~~---------------~~lm~--------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+.. +++|+ ||+++++.+++|+++||||++|+++||++++
T Consensus 394 ~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 394 VRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred eecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 731 66673 9999999999999999999999999999875
No 9
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.7e-54 Score=414.70 Aligned_cols=306 Identities=22% Similarity=0.295 Sum_probs=229.6
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHH--HHhcCCceEEEEEeCCCCCCcc-------------------h---------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKL--ILTHYPYFSVTIIISTFPTLRG-------------------Q--------- 53 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~--L~~~G~~h~Vt~~~~~~~~~~~-------------------p--------- 53 (331)
...+.||+++|+|++||++||++||++ |++|| ++|||++++.+.... |
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G--~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~ 82 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKN--LHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPET 82 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCC--cEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHH
Confidence 455679999999999999999999999 56999 999999998643210 1
Q ss_pred HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccc-------ccC--C-CC
Q 039208 54 LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPN-------TYG--T-TN 123 (331)
Q Consensus 54 ~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~-------~~~--~-~~ 123 (331)
++......+.+.++++++..++||||+|.++.|+..+|+++|||++.|++++++.+..+++++. ..+ . ..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVE 162 (456)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeee
Confidence 1111222223334444444579999999999999999999999999999999988877654421 000 0 00
Q ss_pred --CC-----CCCCccc-------------cc----c------CCCC---C-------CCCCCeEEeccCCCC----CCCC
Q 039208 124 --GL-----KDPQMVL-------------DI----P------CVPY---G-------EQMPPLYCTGAILAA----TTSD 159 (331)
Q Consensus 124 --~~-----~~l~~~~-------------~~----p------~~~~---~-------~~~p~~~~vGp~~~~----~~~~ 159 (331)
.+ .+++..+ .+ . +|++ + +..+++|+|||++.. ....
T Consensus 163 ~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~~~~~ 242 (456)
T PLN02210 163 LPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFLLGDDEE 242 (456)
T ss_pred CCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhhcCcccc
Confidence 11 1221100 00 0 2222 1 112579999999742 1000
Q ss_pred C---------CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhc
Q 039208 160 N---------KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVAD 218 (331)
Q Consensus 160 ~---------~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~ 218 (331)
. ...+.+|.+|||+++++||||||| +++.||+.++++|||+++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~------------ 310 (456)
T PLN02210 243 ETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK------------ 310 (456)
T ss_pred cccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc------------
Confidence 0 013457999999999899999999 8999999999999999986421
Q ss_pred hhhhhhccCchhHHhhh-cCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHh
Q 039208 219 AEASAELFLPEGFVERT-RDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVE 284 (331)
Q Consensus 219 ~~~~~~~~lp~~f~~~~-~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~ 284 (331)
...+.+|.+++ +++|+++ +|+||.+||+|++++ |+++|||||+||+++||+.||+++++
T Consensus 311 ------~~~~~~~~~~~~~~~g~v~-~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 311 ------AQNVQVLQEMVKEGQGVVL-EWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred ------ccchhhHHhhccCCCeEEE-ecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 11345677777 4888766 999999999999987 99999999999999999999999998
Q ss_pred hhccceeeh------h----------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 285 KIRDPLTVA------E----------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 285 ~lGvG~~l~------~----------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
.||+|+++. . +++|. ||++|++.+++|+++||||++||++||++++
T Consensus 384 ~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 384 VFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 789999983 1 56662 9999999999999999999999999999875
No 10
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.9e-54 Score=416.24 Aligned_cols=312 Identities=21% Similarity=0.382 Sum_probs=232.8
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--------------c-----h-------------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--------------G-----Q------------- 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--------------~-----p------------- 53 (331)
++.|++++|+|++||++||++||+.|++|| +.|||++++..... . |
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERG--VIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCC--CeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 347999999999999999999999999999 99999998754210 0 1
Q ss_pred ---------HHH---hhhHHHHHHHHHhhc--CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhc----
Q 039208 54 ---------LAL---LNSPNLHKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYL---- 115 (331)
Q Consensus 54 ---------~~~---~~~~~l~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~---- 115 (331)
++. .....+++.++++++ ..+++|||+|.|+.|+..+|+++|||++.|++++++....++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 000 011112233444443 24689999999999999999999999999999999887654321
Q ss_pred ccc--cCC-CC-CCC-----------CCCccc-c--------------------ccCCCC---C--------C-CCCCeE
Q 039208 116 PNT--YGT-TN-GLK-----------DPQMVL-D--------------------IPCVPY---G--------E-QMPPLY 147 (331)
Q Consensus 116 ~~~--~~~-~~-~~~-----------~l~~~~-~--------------------~p~~~~---~--------~-~~p~~~ 147 (331)
+.. ... .. .+. +++... . +-+|++ + . ..+++|
T Consensus 165 ~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~ 244 (491)
T PLN02534 165 AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVW 244 (491)
T ss_pred ccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEE
Confidence 110 000 00 011 122100 0 003333 1 1 236799
Q ss_pred EeccCCCCCCC--C----CC--C-CcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCC
Q 039208 148 CTGAILAATTS--D----NK--N-DDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPL 206 (331)
Q Consensus 148 ~vGp~~~~~~~--~----~~--~-~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~ 206 (331)
+|||++..... + .. . .+++|.+|||+++++||||||| +++.||+.++++|||+++.+..
T Consensus 245 ~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~ 324 (491)
T PLN02534 245 CVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEK 324 (491)
T ss_pred EECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCcc
Confidence 99999742210 0 00 1 2356999999999999999999 8999999999999999995311
Q ss_pred chhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeeccccc
Q 039208 207 EDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNG 273 (331)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~ 273 (331)
. .+.+ ...+|++|.++++++|+++.+|+||.+||+|++++ |+++|||||+||+++
T Consensus 325 ~-----------~~~~-~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 325 H-----------SELE-EWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred c-----------cchh-hhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 0 0001 11368999999999999998999999999999996 999999999999999
Q ss_pred chhhhHHHHHhhhccceeeh------------------h-------hHHH---H--------hHHHHHHHHHHHHhcCCC
Q 039208 274 DQMVNMAFLVEKIRDPLTVA------------------E-------RRVI---E--------GIRAPKEQAVGALSEGGR 317 (331)
Q Consensus 274 DQ~~na~~v~~~lGvG~~l~------------------~-------~~lm---~--------~a~~l~~~~~~a~~~ggs 317 (331)
||+.||+++++.||+|+++. . +++| + ||++|++++++|+.+|||
T Consensus 393 dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGS 472 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGS 472 (491)
T ss_pred cHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999762 1 6778 1 999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 039208 318 SLAVVAELAESFRK 331 (331)
Q Consensus 318 s~~~l~~~v~~~~~ 331 (331)
|++||++||+++++
T Consensus 473 S~~nl~~fv~~i~~ 486 (491)
T PLN02534 473 SHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999863
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.1e-53 Score=414.27 Aligned_cols=315 Identities=23% Similarity=0.407 Sum_probs=237.1
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC-------------c------c---------
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-------------R------G--------- 52 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~-------------~------~--------- 52 (331)
|.--..++||+++|+|++||++||++||+.|+.|| ..|||++++.... . .
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G--~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKG--LLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCC--CeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCC
Confidence 44444568999999999999999999999999999 9999999874210 0 0
Q ss_pred h-----------HHH----hhhHHHHHHHHHhhc-CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcc
Q 039208 53 Q-----------LAL----LNSPNLHKTLIIQSK-TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLP 116 (331)
Q Consensus 53 p-----------~~~----~~~~~l~~~l~~l~~-~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 116 (331)
| ++. .+.+.++++++++.. ..+++|||+|.|+.|+.++|+++|||++.|++++++....+++++
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 1 111 123334444444321 234599999999999999999999999999999999888776653
Q ss_pred cc----cCC----CC-CCC--------CCCcccc------------------cc------CCCC---C--------CCCC
Q 039208 117 NT----YGT----TN-GLK--------DPQMVLD------------------IP------CVPY---G--------EQMP 144 (331)
Q Consensus 117 ~~----~~~----~~-~~~--------~l~~~~~------------------~p------~~~~---~--------~~~p 144 (331)
.. .+. .. .++ +++..+. .. +|++ + +..
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~- 237 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC- 237 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC-
Confidence 21 000 00 011 2221110 00 3443 1 112
Q ss_pred CeEEeccCCCCCCC--C---C--CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCC
Q 039208 145 PLYCTGAILAATTS--D---N--KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPP 205 (331)
Q Consensus 145 ~~~~vGp~~~~~~~--~---~--~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~ 205 (331)
++|+|||++..... . . ...+++|.+|||+++++||||||| +++.||+.++++|||+++...
T Consensus 238 ~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~ 317 (480)
T PLN02555 238 PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPH 317 (480)
T ss_pred CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCc
Confidence 49999999753211 0 1 123467999999999899999999 899999999999999998531
Q ss_pred CchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccc
Q 039208 206 LEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSN 272 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~ 272 (331)
.. .+ .....+|++|.++++++|+++ +|+||.+||+|++++ |+++|||||+||++
T Consensus 318 ~~-----------~~-~~~~~lp~~~~~~~~~~g~v~-~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~ 384 (480)
T PLN02555 318 KD-----------SG-VEPHVLPEEFLEKAGDKGKIV-QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW 384 (480)
T ss_pred cc-----------cc-chhhcCChhhhhhcCCceEEE-ecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc
Confidence 00 00 001358999999999898777 999999999999998 99999999999999
Q ss_pred cchhhhHHHHHhhhccceeeh-----h------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHH
Q 039208 273 GDQMVNMAFLVEKIRDPLTVA-----E------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELA 326 (331)
Q Consensus 273 ~DQ~~na~~v~~~lGvG~~l~-----~------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v 326 (331)
+||+.||+++++.||+|+++. . +++|+ ||++|++++++|+++||||++|+++||
T Consensus 385 ~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v 464 (480)
T PLN02555 385 GDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFV 464 (480)
T ss_pred cccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999899999992 1 56672 999999999999999999999999999
Q ss_pred HHHhC
Q 039208 327 ESFRK 331 (331)
Q Consensus 327 ~~~~~ 331 (331)
+++++
T Consensus 465 ~~i~~ 469 (480)
T PLN02555 465 DKLVR 469 (480)
T ss_pred HHHHh
Confidence 99863
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1e-53 Score=413.23 Aligned_cols=305 Identities=24% Similarity=0.431 Sum_probs=233.1
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------c-----h----------H---H
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR----------G-----Q----------L---A 55 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~----------~-----p----------~---~ 55 (331)
...+.||+++|+|++||++||++||+.|+++| ++||++|++.+... . | + +
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~ 80 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRG--FEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIE 80 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCC--CEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHH
Confidence 45567999999999999999999999999999 99999998764310 1 1 1 1
Q ss_pred ---H-hhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC----------
Q 039208 56 ---L-LNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT---------- 121 (331)
Q Consensus 56 ---~-~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~---------- 121 (331)
. .+.+.++++++++....+++|||+|.++.|+.++|+++|||++.|++++++.+..+++++.+...
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPR 160 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccc
Confidence 1 23444555555442223568999999999999999999999999999999887766544321000
Q ss_pred ----C--C-CC-----CCCCccc--c------c----------------cCCCC---C-------------CCCCCeEEe
Q 039208 122 ----T--N-GL-----KDPQMVL--D------I----------------PCVPY---G-------------EQMPPLYCT 149 (331)
Q Consensus 122 ----~--~-~~-----~~l~~~~--~------~----------------p~~~~---~-------------~~~p~~~~v 149 (331)
. . .+ .+++... . . -+|++ + ...|++++|
T Consensus 161 ~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~i 240 (448)
T PLN02562 161 QLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQI 240 (448)
T ss_pred cccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEe
Confidence 0 0 00 1111100 0 0 03333 1 124689999
Q ss_pred ccCCCCCCCC---CC--CCcchhhhhhccCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeCCCCchhhh
Q 039208 150 GAILAATTSD---NK--NDDHTCFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLFPPLEDEFR 211 (331)
Q Consensus 150 Gp~~~~~~~~---~~--~~~~~~~~wLd~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~~~~~~~~~ 211 (331)
||++...... .. ..+.+|.+|||+++++||||||| +++.||+.++++|||+++...
T Consensus 241 Gpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~------ 314 (448)
T PLN02562 241 GPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW------ 314 (448)
T ss_pred cCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc------
Confidence 9997643110 11 22456889999999899999999 899999999999999998641
Q ss_pred hhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhh
Q 039208 212 QTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVN 278 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~n 278 (331)
...+|++|.+|++++++++ +|+||.+||+|++++ |+++|||||+||+++||+.|
T Consensus 315 ------------~~~l~~~~~~~~~~~~~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 381 (448)
T PLN02562 315 ------------REGLPPGYVERVSKQGKVV-SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVN 381 (448)
T ss_pred ------------hhhCCHHHHHHhccCEEEE-ecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHH
Confidence 1248999999998888777 999999999999997 99999999999999999999
Q ss_pred HHHHHhhhccceeehh----------hHHHH------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 279 MAFLVEKIRDPLTVAE----------RRVIE------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 279 a~~v~~~lGvG~~l~~----------~~lm~------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
|+++++.||+|+++.. +++|+ ||++++++++++ ++||||++|+++||+++|
T Consensus 382 a~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 382 CAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9999987899999843 56663 999999998887 778999999999999885
No 13
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.8e-53 Score=414.26 Aligned_cols=320 Identities=30% Similarity=0.519 Sum_probs=237.0
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC----------------c--c-----h----------
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL----------------R--G-----Q---------- 53 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~----------------~--~-----p---------- 53 (331)
|+|++++|+|++||++||++||++|+.||....|||++++.+.. . . |
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 68999999999999999999999999997226799998864411 0 1 1
Q ss_pred ----HHHhhhHHHHHHHHHhhcC------CCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC--
Q 039208 54 ----LALLNSPNLHKTLIIQSKT------SNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT-- 121 (331)
Q Consensus 54 ----~~~~~~~~l~~~l~~l~~~------~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~-- 121 (331)
++..+.+.+++.++++... .+++|||+|.|+.|+.++|+++|||++.|++++++.++.+++++...+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 2234455566666665421 2358999999999999999999999999999999999888776532111
Q ss_pred --------C-C--CCCC---------CCcccc----c----------c------CCCC---C---------C--CCCCeE
Q 039208 122 --------T-N--GLKD---------PQMVLD----I----------P------CVPY---G---------E--QMPPLY 147 (331)
Q Consensus 122 --------~-~--~~~~---------l~~~~~----~----------p------~~~~---~---------~--~~p~~~ 147 (331)
. . .+.+ ++.... . . +|++ + . ..|+++
T Consensus 162 ~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~ 241 (481)
T PLN02554 162 YDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVY 241 (481)
T ss_pred cCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEE
Confidence 0 0 0111 111000 0 0 2332 1 1 347899
Q ss_pred EeccCCC-CCCCCC--CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhh
Q 039208 148 CTGAILA-ATTSDN--KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQ 212 (331)
Q Consensus 148 ~vGp~~~-~~~~~~--~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~ 212 (331)
+|||++. ...... ...+.+|.+|||+++++||||||| +++.||++++++|||+++.+......
T Consensus 242 ~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~-- 319 (481)
T PLN02554 242 PVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMK-- 319 (481)
T ss_pred EeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccc--
Confidence 9999943 221111 234568999999999899999999 89999999999999999863210000
Q ss_pred hhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhH
Q 039208 213 TLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNM 279 (331)
Q Consensus 213 ~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na 279 (331)
+..++..+....+|++|++|++++|+++ +|+||.+||+|++++ |+++|||||+||+++||+.||
T Consensus 320 --~~~~~~~~~~~~lp~~~~~r~~~~g~v~-~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na 396 (481)
T PLN02554 320 --EPPGEFTNLEEILPEGFLDRTKDIGKVI-GWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNA 396 (481)
T ss_pred --cccccccchhhhCChHHHHHhccCceEE-eeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhH
Confidence 0000000111237999999999999887 999999999999997 999999999999999999999
Q ss_pred HHHHhhhccceeeh------------h-----------hHHHH-------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 039208 280 AFLVEKIRDPLTVA------------E-----------RRVIE-------GIRAPKEQAVGALSEGGRSLAVVAELAESF 329 (331)
Q Consensus 280 ~~v~~~lGvG~~l~------------~-----------~~lm~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~ 329 (331)
+++++.||+|+++. . +++|+ ||+++++++++|+++||||++|+++||+++
T Consensus 397 ~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~ 476 (481)
T PLN02554 397 FEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDV 476 (481)
T ss_pred HHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 77666589999873 1 66772 999999999999999999999999999998
Q ss_pred hC
Q 039208 330 RK 331 (331)
Q Consensus 330 ~~ 331 (331)
++
T Consensus 477 ~~ 478 (481)
T PLN02554 477 TK 478 (481)
T ss_pred Hh
Confidence 74
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.5e-53 Score=414.96 Aligned_cols=310 Identities=25% Similarity=0.436 Sum_probs=232.2
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------------------h----------
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------------------Q---------- 53 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------------------p---------- 53 (331)
+.||+++|+|++||++||++||++|++|| ++|||++++.+.... |
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG--~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRG--AKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCC--CEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 46999999999999999999999999999 999999987543100 1
Q ss_pred --H--------------H---HhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhh
Q 039208 54 --L--------------A---LLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLY 114 (331)
Q Consensus 54 --~--------------~---~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~ 114 (331)
. + ....+.+.+.+++++++.++||||+|.++.|+..+|+++|||++.|++++++....++.
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHH
Confidence 0 0 01112333444555555689999999999999999999999999999999877765442
Q ss_pred c----cccc-CC--CC-CCCCCCc-------------ccc------------------ccCCCC-----------CC-CC
Q 039208 115 L----PNTY-GT--TN-GLKDPQM-------------VLD------------------IPCVPY-----------GE-QM 143 (331)
Q Consensus 115 ~----~~~~-~~--~~-~~~~l~~-------------~~~------------------~p~~~~-----------~~-~~ 143 (331)
+ +... .. .. .+.+++. ... +-+|++ .. ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~ 242 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVA 242 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccC
Confidence 1 1100 00 00 0111110 000 002332 11 12
Q ss_pred CCeEEeccCCCCCCCC------CC---CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEe
Q 039208 144 PPLYCTGAILAATTSD------NK---NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVL 202 (331)
Q Consensus 144 p~~~~vGp~~~~~~~~------~~---~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~ 202 (331)
+++++|||+....... .+ ..+.+|.+|||+++++||||||| +++.||+.++++|||+++
T Consensus 243 ~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~ 322 (482)
T PLN03007 243 KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVR 322 (482)
T ss_pred CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4799999985432100 11 12467999999999899999999 899999999999999999
Q ss_pred CCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeec
Q 039208 203 FPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAW 269 (331)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~ 269 (331)
.+... .+....+|++|.+|+.++|+++.+|+||.+||+|++++ |+++|||||+|
T Consensus 323 ~~~~~-------------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 323 KNENQ-------------GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred cCCcc-------------cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 74210 01123589999999999999999999999999999996 99999999999
Q ss_pred ccccchhhhHHHHHhhhccceeeh--------h------------hHHHH---------hHHHHHHHHHHHHhcCCChHH
Q 039208 270 PSNGDQMVNMAFLVEKIRDPLTVA--------E------------RRVIE---------GIRAPKEQAVGALSEGGRSLA 320 (331)
Q Consensus 270 P~~~DQ~~na~~v~~~lGvG~~l~--------~------------~~lm~---------~a~~l~~~~~~a~~~ggss~~ 320 (331)
|+++||+.||+++++.||+|+.+. . +++|+ ||+++++++++|+++||||++
T Consensus 390 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 390 PVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred cchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999987677777641 1 56662 999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 039208 321 VVAELAESFRK 331 (331)
Q Consensus 321 ~l~~~v~~~~~ 331 (331)
|+++||+++++
T Consensus 470 ~l~~~v~~~~~ 480 (482)
T PLN03007 470 DLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 15
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.1e-53 Score=408.31 Aligned_cols=304 Identities=18% Similarity=0.237 Sum_probs=226.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------------------h---------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------------------Q--------- 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------------------p--------- 53 (331)
.++|++++|+|++||++||++||+.|++|| |+|||+|+..+.... |
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G--~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l 80 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKG--HRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDI 80 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCC--CEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccch
Confidence 468999999999999999999999999999 999999976543210 0
Q ss_pred ------HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCC--CCC
Q 039208 54 ------LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTT--NGL 125 (331)
Q Consensus 54 ------~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~ 125 (331)
++....+.+.+.+++++++.++||||+| ++.|+..+|+++|||++.|++++++... +++++...... ..+
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~~~~pgl 158 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLGVPPPGY 158 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccCCCCCCC
Confidence 0111122333445555555588999999 5899999999999999999999998765 44443211000 001
Q ss_pred ---------CCCCcc------c---------ccc------CCCC-----------CC-CCCCeEEeccCCCCCCCCCCCC
Q 039208 126 ---------KDPQMV------L---------DIP------CVPY-----------GE-QMPPLYCTGAILAATTSDNKND 163 (331)
Q Consensus 126 ---------~~l~~~------~---------~~p------~~~~-----------~~-~~p~~~~vGp~~~~~~~~~~~~ 163 (331)
.+++.. . .+. +|++ .+ ..|++++|||++.... ....+
T Consensus 159 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~~~~ 237 (442)
T PLN02208 159 PSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TSKPL 237 (442)
T ss_pred CCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CCCCC
Confidence 111100 0 000 2333 12 2478999999986431 11235
Q ss_pred cchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhH
Q 039208 164 DHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGF 231 (331)
Q Consensus 164 ~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f 231 (331)
+.+|.+|||+++++||||||| +++.+|+.++++|+|+++.+... + +....+|++|
T Consensus 238 ~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~------------~-~~~~~lp~~f 304 (442)
T PLN02208 238 EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS------------S-TVQEGLPEGF 304 (442)
T ss_pred HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc------------c-chhhhCCHHH
Confidence 678999999999899999999 78899999999999999964110 0 1123599999
Q ss_pred HhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh----
Q 039208 232 VERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE---- 294 (331)
Q Consensus 232 ~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~---- 294 (331)
++|++++|+++.+|+||.+||+|++|+ |+++|||||+||+++||+.||+++++.||+|++++.
T Consensus 305 ~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~ 384 (442)
T PLN02208 305 EERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTG 384 (442)
T ss_pred HHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCC
Confidence 999999999999999999999999997 999999999999999999999998888999999841
Q ss_pred -----------hHHHH-----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 295 -----------RRVIE-----------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 295 -----------~~lm~-----------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
+++|+ ||+++++++ .+||||++|+++||+++++
T Consensus 385 ~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~----~~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 385 WFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEIL----VSPGLLTGYVDKFVEELQE 439 (442)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHHHHHH
Confidence 56662 444444443 4589999999999999874
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.5e-53 Score=405.97 Aligned_cols=309 Identities=19% Similarity=0.280 Sum_probs=228.2
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC----------cc-------h--------------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL----------RG-------Q-------------- 53 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~----------~~-------p-------------- 53 (331)
+.++||+++|+|++||++||++||+.|+.|| +.|||++++.... .. |
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g--~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKG--HTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCC--CEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCccccccc
Confidence 3568999999999999999999999999999 9999999886421 00 1
Q ss_pred -------HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccc---------
Q 039208 54 -------LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPN--------- 117 (331)
Q Consensus 54 -------~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~--------- 117 (331)
.+......+++.++++++..+++|||+|+ +.|+.++|+++|||++.|++++++.++.+++ +.
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~~~~~pg 158 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGELGVPPPG 158 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccCCCCCCC
Confidence 01111112233344444444789999995 8899999999999999999999988887653 21
Q ss_pred ccCCC--CCCCCCCcc-----------c---------ccc------CCCC---C--------CC-CCCeEEeccCCCCCC
Q 039208 118 TYGTT--NGLKDPQMV-----------L---------DIP------CVPY---G--------EQ-MPPLYCTGAILAATT 157 (331)
Q Consensus 118 ~~~~~--~~~~~l~~~-----------~---------~~p------~~~~---~--------~~-~p~~~~vGp~~~~~~ 157 (331)
+.... .+..+++.. . .+. +|++ + .. .+++|+|||++...
T Consensus 159 lp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~- 237 (453)
T PLN02764 159 YPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEP- 237 (453)
T ss_pred CCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCc-
Confidence 10000 000111100 0 000 2433 1 11 25799999997532
Q ss_pred CCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhc
Q 039208 158 SDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAEL 225 (331)
Q Consensus 158 ~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (331)
......+.+|.+|||+|+++||||||| +++.||+.++++|+|+++..... + +...
T Consensus 238 ~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~------------~-~~~~ 304 (453)
T PLN02764 238 DKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGS------------S-TIQE 304 (453)
T ss_pred cccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC------------c-chhh
Confidence 111123467999999999999999999 89999999999999999964210 0 1124
Q ss_pred cCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccceee
Q 039208 226 FLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTV 292 (331)
Q Consensus 226 ~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l 292 (331)
.+|++|++|++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||+++++.||+|+.+
T Consensus 305 ~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~ 384 (453)
T PLN02764 305 ALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEV 384 (453)
T ss_pred hCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEe
Confidence 599999999999999999999999999999997 9999999999999999999999998779999986
Q ss_pred h--------h-------hHHHH-------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 293 A--------E-------RRVIE-------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 293 ~--------~-------~~lm~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
. . +++|+ +.++-+++++++..+||||++|+++||+++++
T Consensus 385 ~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 385 AREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQD 445 (453)
T ss_pred ccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2 1 66673 23344444445557899999999999999864
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6e-53 Score=411.28 Aligned_cols=313 Identities=29% Similarity=0.534 Sum_probs=231.0
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCc-eEEEEEeCCCCCC---------------cc-----h-----------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPY-FSVTIIISTFPTL---------------RG-----Q----------- 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~-h~Vt~~~~~~~~~---------------~~-----p----------- 53 (331)
++.|++++|+|++||++||++||++|+.||.. +.||++++..+.. .. |
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 45799999999999999999999999999821 1356655322110 01 1
Q ss_pred ----------HHHhhhHHHHHHHHHhhcC-----C-CccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccc
Q 039208 54 ----------LALLNSPNLHKTLIIQSKT-----S-NLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPN 117 (331)
Q Consensus 54 ----------~~~~~~~~l~~~l~~l~~~-----~-~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~ 117 (331)
+++.+.+.+++.++++... . +++|||+|.|+.|+.++|+++|||++.|++++++.++.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 1122333445555554321 2 46999999999999999999999999999999988887765542
Q ss_pred cc---C-C----C--C--CCCC---------CCccc---c-----------------ccCCCC---C--------C---C
Q 039208 118 TY---G-T----T--N--GLKD---------PQMVL---D-----------------IPCVPY---G--------E---Q 142 (331)
Q Consensus 118 ~~---~-~----~--~--~~~~---------l~~~~---~-----------------~p~~~~---~--------~---~ 142 (331)
.. . . . . .+.+ ++... . +-+|++ + . .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~ 241 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPEN 241 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhccc
Confidence 11 0 0 0 0 0111 11100 0 003433 1 1 1
Q ss_pred CCCeEEeccCCCCCCC--CC--CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCC
Q 039208 143 MPPLYCTGAILAATTS--DN--KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPL 206 (331)
Q Consensus 143 ~p~~~~vGp~~~~~~~--~~--~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~ 206 (331)
.|++|+|||++..... .. ...+.+|.+|||+++++||||||| +|+.||+.++++|||+++.+..
T Consensus 242 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~ 321 (475)
T PLN02167 242 YPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPA 321 (475)
T ss_pred CCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcc
Confidence 3689999999763211 01 112357999999999899999999 8999999999999999986421
Q ss_pred chhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeeccccc
Q 039208 207 EDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNG 273 (331)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~ 273 (331)
. +.+....+|++|.||++++|+++ +|+||.+||+|++++ |+++|||||+||+++
T Consensus 322 ~------------~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 388 (475)
T PLN02167 322 E------------YASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYA 388 (475)
T ss_pred c------------ccchhhhCChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 0 00112358999999999999877 999999999999997 999999999999999
Q ss_pred chhhhHHHHHhhhccceeeh--------h-----------hHHHH-------hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 274 DQMVNMAFLVEKIRDPLTVA--------E-----------RRVIE-------GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 274 DQ~~na~~v~~~lGvG~~l~--------~-----------~~lm~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
||+.||+++++.||+|+++. . +++|+ ||+++++++++|+++||||++|+++||+
T Consensus 389 DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 389 EQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred cchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999988666699999772 1 56663 9999999999999999999999999999
Q ss_pred HHhC
Q 039208 328 SFRK 331 (331)
Q Consensus 328 ~~~~ 331 (331)
+++.
T Consensus 469 ~i~~ 472 (475)
T PLN02167 469 DLLG 472 (475)
T ss_pred HHHh
Confidence 9863
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.8e-53 Score=406.29 Aligned_cols=307 Identities=36% Similarity=0.622 Sum_probs=225.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCc--eEEEEEeCCCCC--------C------cc-----h-----------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPY--FSVTIIISTFPT--------L------RG-----Q----------- 53 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~--h~Vt~~~~~~~~--------~------~~-----p----------- 53 (331)
.+-|++++|+|++||++||++||++|+++|+. ..||++++..+. . .. |
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 34699999999999999999999999999732 344445443311 0 01 1
Q ss_pred ----------HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC--
Q 039208 54 ----------LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT-- 121 (331)
Q Consensus 54 ----------~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~-- 121 (331)
..+.+.+.++++++++....+++|||+|.|+.|+..+|+++|||++.|++++++.++.+++++...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 01234445555665543234569999999999999999999999999999999998888765432110
Q ss_pred ------CC--CCC--------CCCcccc------c----------------cCCCC---C--------C-C-CCCeEEec
Q 039208 122 ------TN--GLK--------DPQMVLD------I----------------PCVPY---G--------E-Q-MPPLYCTG 150 (331)
Q Consensus 122 ------~~--~~~--------~l~~~~~------~----------------p~~~~---~--------~-~-~p~~~~vG 150 (331)
.. .+. +++.... . -+|++ + . . .+++|+||
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vG 241 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIG 241 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEe
Confidence 00 111 1221110 0 03433 1 1 1 25799999
Q ss_pred cCCCCCCCC--CCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhh
Q 039208 151 AILAATTSD--NKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTV 216 (331)
Q Consensus 151 p~~~~~~~~--~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~ 216 (331)
|++...... ....+.+|.+|||+++++||||||| +|+.||+.++++|||+++.+...
T Consensus 242 Pl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~--------- 312 (451)
T PLN03004 242 PLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL--------- 312 (451)
T ss_pred eeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc---------
Confidence 997432111 1112356999999999999999999 89999999999999999964110
Q ss_pred hchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHH
Q 039208 217 ADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLV 283 (331)
Q Consensus 217 ~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~ 283 (331)
.....+....+|++|+||++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||++++
T Consensus 313 ~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~ 392 (451)
T PLN03004 313 EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV 392 (451)
T ss_pred cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 000001112489999999999999998999999999999996 9999999999999999999999999
Q ss_pred hhhccceeeh-----h----------hHHHH------hHHHHHHHHHHHHhcCCChHHH
Q 039208 284 EKIRDPLTVA-----E----------RRVIE------GIRAPKEQAVGALSEGGRSLAV 321 (331)
Q Consensus 284 ~~lGvG~~l~-----~----------~~lm~------~a~~l~~~~~~a~~~ggss~~~ 321 (331)
++||+|++++ . +++|+ ||+++++++++|+++||||+++
T Consensus 393 ~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~~ 451 (451)
T PLN03004 393 DEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHTA 451 (451)
T ss_pred HHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 8799999984 1 56663 9999999999999999999863
No 19
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-52 Score=402.70 Aligned_cols=307 Identities=21% Similarity=0.283 Sum_probs=224.5
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------c-------h--------------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR----------G-------Q-------------- 53 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~----------~-------p-------------- 53 (331)
++++|++++|+|++||++||++||+.|+++| ++|||++++.+... . |
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKG--HRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCccccccc
Confidence 4678999999999999999999999999999 99999998754211 0 1
Q ss_pred H-------HHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC---CC
Q 039208 54 L-------ALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT---TN 123 (331)
Q Consensus 54 ~-------~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~---~~ 123 (331)
+ +..+.+.+.+.+++++++.++||||+|. +.|+..+|+++|||++.|++++++..+.+++.....+. ..
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~ 158 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDY 158 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCC
Confidence 0 1122233444555555555789999995 88999999999999999999999888776541110000 00
Q ss_pred C-----CC--C--CCcccc------------------ccCCCC---C--------C-CCCCeEEeccCCCCCCCC-CCCC
Q 039208 124 G-----LK--D--PQMVLD------------------IPCVPY---G--------E-QMPPLYCTGAILAATTSD-NKND 163 (331)
Q Consensus 124 ~-----~~--~--l~~~~~------------------~p~~~~---~--------~-~~p~~~~vGp~~~~~~~~-~~~~ 163 (331)
+ ++ + ++.... +-+|++ + . ..+++|+|||++...... ....
T Consensus 159 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~ 238 (446)
T PLN00414 159 PLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPL 238 (446)
T ss_pred CCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCccc
Confidence 0 10 0 000000 003433 1 1 135799999997532111 1122
Q ss_pred cchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhH
Q 039208 164 DHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGF 231 (331)
Q Consensus 164 ~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f 231 (331)
+++|.+|||+|+++||||||| |++.||+.++++|+|+++.+... . +....+|++|
T Consensus 239 ~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~-----------~--~~~~~lp~~f 305 (446)
T PLN00414 239 EDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS-----------S--TVQEALPEGF 305 (446)
T ss_pred HHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc-----------c--cchhhCChhH
Confidence 356999999999999999999 89999999999999999975211 0 1123599999
Q ss_pred HhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccceeeh-----
Q 039208 232 VERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA----- 293 (331)
Q Consensus 232 ~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~----- 293 (331)
++|++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||++++++||+|+++.
T Consensus 306 ~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~ 385 (446)
T PLN00414 306 EERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSG 385 (446)
T ss_pred HHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCC
Confidence 999999999999999999999999997 99999999999999999999999987799999983
Q ss_pred -h---------hHHHH-----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 294 -E---------RRVIE-----------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 294 -~---------~~lm~-----------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
. +++|+ ||+++++. +.++|||| .++++||+++++
T Consensus 386 ~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~---~~~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 386 WFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKET---LVSPGLLS-GYADKFVEALEN 440 (446)
T ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH---HHcCCCcH-HHHHHHHHHHHH
Confidence 1 66673 44444443 24566633 449999999864
No 20
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.6e-51 Score=394.18 Aligned_cols=308 Identities=21% Similarity=0.275 Sum_probs=226.2
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-----------c-----h---------------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-----------G-----Q--------------- 53 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-----------~-----p--------------- 53 (331)
..+.||+++|+|++||++||++||+.|++|| +.|||++++.+... . |
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKG--HKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCC--CEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccc
Confidence 3457999999999999999999999999999 99999998865310 0 1
Q ss_pred --------HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccccc------
Q 039208 54 --------LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTY------ 119 (331)
Q Consensus 54 --------~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~------ 119 (331)
++..+...+++.++++++..+++|||+|.|+.|+..+|+++|||++.|++++++..+.+++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 011122233444555555557899999999999999999999999999999998887764332110
Q ss_pred ---CCC--C----CC--------CCCCcccc----c--------------------cCCCC---C--------C-CCCCe
Q 039208 120 ---GTT--N----GL--------KDPQMVLD----I--------------------PCVPY---G--------E-QMPPL 146 (331)
Q Consensus 120 ---~~~--~----~~--------~~l~~~~~----~--------------------p~~~~---~--------~-~~p~~ 146 (331)
+.. . +. .+++..+. . -+|++ + . ..+++
T Consensus 162 ~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v 241 (472)
T PLN02670 162 STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPI 241 (472)
T ss_pred CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCe
Confidence 000 0 00 01111000 0 02333 1 1 12579
Q ss_pred EEeccCCCC-CC-CCCC----CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCch
Q 039208 147 YCTGAILAA-TT-SDNK----NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLED 208 (331)
Q Consensus 147 ~~vGp~~~~-~~-~~~~----~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~ 208 (331)
|+|||++.. .. .... ..+++|.+|||+++++||||||| +++.||+.++++|||+++++...
T Consensus 242 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~- 320 (472)
T PLN02670 242 IPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGT- 320 (472)
T ss_pred EEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc-
Confidence 999999753 10 0011 11257999999999899999999 89999999999999999964210
Q ss_pred hhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccch
Q 039208 209 EFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQ 275 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ 275 (331)
+.+....+|++|.+|++++|+++.+|+||.+||+|++++ |+++|||||+||+++||
T Consensus 321 -----------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 389 (472)
T PLN02670 321 -----------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ 389 (472)
T ss_pred -----------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc
Confidence 001123599999999999999998999999999999997 99999999999999999
Q ss_pred hhhHHHHHhhhccceeehh----------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 276 MVNMAFLVEKIRDPLTVAE----------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 276 ~~na~~v~~~lGvG~~l~~----------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+.||+++++ +|+|+++.. +++|+ ||+++++.++ +.+.-.+.+++|+++++
T Consensus 390 ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 390 GLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLR 464 (472)
T ss_pred HHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHH
Confidence 999999987 799999841 56662 5555554444 45888889999998876
Q ss_pred C
Q 039208 331 K 331 (331)
Q Consensus 331 ~ 331 (331)
+
T Consensus 465 ~ 465 (472)
T PLN02670 465 E 465 (472)
T ss_pred H
Confidence 4
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.8e-50 Score=391.45 Aligned_cols=299 Identities=23% Similarity=0.323 Sum_probs=224.1
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCc---------c-----h---------------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPTLR---------G-----Q--------------- 53 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~---------~-----p--------------- 53 (331)
+.+.||+++|+|++||++||++||++|++| | |+|||++++.+... . |
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G--~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~ 85 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPD--ILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPG 85 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCC--cEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHH
Confidence 456899999999999999999999999999 9 99999999865311 1 1
Q ss_pred HHH----hhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC--------
Q 039208 54 LAL----LNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT-------- 121 (331)
Q Consensus 54 ~~~----~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~-------- 121 (331)
++. .+.+.++++++++ ..++||||+|.++.|+..+|+++|||++.|+++++...+.+.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~--~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRL--EPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELS 163 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhc--CCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccc
Confidence 111 2233333444433 14689999999999999999999999999999999777766555321110
Q ss_pred ----C-C-CCC--------CCCccc----------------------cccCCCC---C--------C-CCCCeEEeccCC
Q 039208 122 ----T-N-GLK--------DPQMVL----------------------DIPCVPY---G--------E-QMPPLYCTGAIL 153 (331)
Q Consensus 122 ----~-~-~~~--------~l~~~~----------------------~~p~~~~---~--------~-~~p~~~~vGp~~ 153 (331)
. . .+. +++... .+-+|++ + . ..+++++|||+.
T Consensus 164 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~ 243 (459)
T PLN02448 164 ESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSI 243 (459)
T ss_pred cccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcc
Confidence 0 0 011 111100 0002332 1 1 235799999997
Q ss_pred CCCCCC--C----C-CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhh
Q 039208 154 AATTSD--N----K-NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTL 214 (331)
Q Consensus 154 ~~~~~~--~----~-~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~ 214 (331)
...... . . ..+.+|.+||++++++||||||| +++.||++++++|||+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~--------- 314 (459)
T PLN02448 244 PYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA--------- 314 (459)
T ss_pred cccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---------
Confidence 532110 0 0 12247999999999899999999 899999999999999987531
Q ss_pred hhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHH
Q 039208 215 TVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAF 281 (331)
Q Consensus 215 ~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~ 281 (331)
.+|.++..++++++ +|+||.+||+|++++ |+++|||||+||+++||+.||++
T Consensus 315 --------------~~~~~~~~~~~~v~-~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~ 379 (459)
T PLN02448 315 --------------SRLKEICGDMGLVV-PWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKL 379 (459)
T ss_pred --------------hhHhHhccCCEEEe-ccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHH
Confidence 12334444566666 999999999999996 99999999999999999999999
Q ss_pred HHhhhccceeeh-------h----------hHHHH-----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 282 LVEKIRDPLTVA-------E----------RRVIE-----------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 282 v~~~lGvG~~l~-------~----------~~lm~-----------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
+++.||+|+.+. . +++|+ ||+++++++++|+.+||||++||++||+++++
T Consensus 380 v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 380 IVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 999889999883 1 66661 99999999999999999999999999999874
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.5e-31 Score=260.90 Aligned_cols=274 Identities=20% Similarity=0.239 Sum_probs=186.6
Q ss_pred cccEEEEE-cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC--CCc--c--------h----H----HH--------
Q 039208 6 IIIRLFFN-PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP--TLR--G--------Q----L----AL-------- 56 (331)
Q Consensus 6 ~~~~i~~~-p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~--~~~--~--------p----~----~~-------- 56 (331)
+..||+.+ |.++.||++.+..++++|++|| |+||++++... ... . + . ++
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rG--H~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERG--HNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKR 96 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcC--CeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhh
Confidence 34567755 8899999999999999999999 99999987421 100 0 1 0 00
Q ss_pred -------------------hhhHHH-HHHHHHhhc--CCCccEEEEcCcchhHHHHHHHc-CCCeEEEecccHHHHHH--
Q 039208 57 -------------------LNSPNL-HKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSL-NIPTYLFYASSASALAQ-- 111 (331)
Q Consensus 57 -------------------~~~~~l-~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~-giP~v~~~~~~~~~~~~-- 111 (331)
.|...+ ...+.++++ +.+||+||+|.+..|+..+|+.+ |+|.|.++++.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~ 176 (507)
T PHA03392 97 GVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFET 176 (507)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHh
Confidence 000011 011223344 56799999999999999999999 99988887754432211
Q ss_pred Hh-------hcccccC----CCC---CCCC--------------CC-------cccc--cc-------------CCC---
Q 039208 112 VL-------YLPNTYG----TTN---GLKD--------------PQ-------MVLD--IP-------------CVP--- 138 (331)
Q Consensus 112 ~~-------~~~~~~~----~~~---~~~~--------------l~-------~~~~--~p-------------~~~--- 138 (331)
.. |+|.... ..+ .+.+ .+ ..+. .| .|.
T Consensus 177 ~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~ 256 (507)
T PHA03392 177 MGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPV 256 (507)
T ss_pred hccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCcc
Confidence 11 1222111 110 0000 00 0000 11 111
Q ss_pred --CC-CCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH---------------HHHHHHHhcCCcEEEE
Q 039208 139 --YG-EQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF---------------EMAMRLKRSGAAFLWV 200 (331)
Q Consensus 139 --~~-~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf---------------~l~~al~~~~~~flw~ 200 (331)
++ +..|++..|||++... .+..+++.++.+||++++ +++||+|| .+++++++.+++|||+
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~-~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~ 334 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHK-KPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWK 334 (507)
T ss_pred ccCCCCCCCCeeeecccccCC-CCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 12 3568899999997643 112457888999999874 58999999 7889999999999999
Q ss_pred EeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEe
Q 039208 201 VLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMV 267 (331)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l 267 (331)
++.... ...+| .|+.+.+|+||.+||+||.+. |+++|||||
T Consensus 335 ~~~~~~-----------------~~~~p---------~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v 388 (507)
T PHA03392 335 YDGEVE-----------------AINLP---------ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMV 388 (507)
T ss_pred ECCCcC-----------------cccCC---------CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEE
Confidence 986421 01244 577777999999999999886 999999999
Q ss_pred ecccccchhhhHHHHHhhhccceeehh------------hHHHH------hHHHHHHHHHH
Q 039208 268 AWPSNGDQMVNMAFLVEKIRDPLTVAE------------RRVIE------GIRAPKEQAVG 310 (331)
Q Consensus 268 ~~P~~~DQ~~na~~v~~~lGvG~~l~~------------~~lm~------~a~~l~~~~~~ 310 (331)
++|+++||+.||+++++ +|+|+.++. +++++ ||+++++..++
T Consensus 389 ~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 389 GLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRH 448 (507)
T ss_pred ECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999 599999975 34443 77777766655
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.1e-35 Score=291.22 Aligned_cols=268 Identities=21% Similarity=0.297 Sum_probs=160.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC--CC----cc------h------------------HHH-h
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP--TL----RG------Q------------------LAL-L 57 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~--~~----~~------p------------------~~~-~ 57 (331)
||+++|. ++||+++|..|+++|++|| |+||++++... .. .. + .+. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rG--H~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERG--HNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSES 78 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH---TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcC--CceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhc
Confidence 6888885 8899999999999999999 99999987531 11 00 0 000 0
Q ss_pred hh-HHHHHHH--------------HHh---------hcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHH--
Q 039208 58 NS-PNLHKTL--------------IIQ---------SKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQ-- 111 (331)
Q Consensus 58 ~~-~~l~~~l--------------~~l---------~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~-- 111 (331)
.. ..+...+ +.+ ++..++|++|+|.+..|+..+|+.+|+|.+.+.++.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~ 158 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSF 158 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhh
Confidence 00 0111000 001 123479999999999999999999999987754332211100
Q ss_pred -------HhhcccccCCCC---CCC----CC---------------C--cc----cccc--------------CCCC---
Q 039208 112 -------VLYLPNTYGTTN---GLK----DP---------------Q--MV----LDIP--------------CVPY--- 139 (331)
Q Consensus 112 -------~~~~~~~~~~~~---~~~----~l---------------~--~~----~~~p--------------~~~~--- 139 (331)
..+.|....... .+. +. + .. ...+ +|+.
T Consensus 159 ~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~l 238 (500)
T PF00201_consen 159 SGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSHPSL 238 (500)
T ss_dssp TSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE-
T ss_pred ccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhccccC
Confidence 001121110000 110 00 0 00 0000 1111
Q ss_pred --C-CCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeC
Q 039208 140 --G-EQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLF 203 (331)
Q Consensus 140 --~-~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~ 203 (331)
+ ...|++.+||+++... ..+++.++++|+++..+++|||||| +++++|++++++|||++++
T Consensus 239 d~prp~~p~v~~vGgl~~~~---~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~ 315 (500)
T PF00201_consen 239 DFPRPLLPNVVEVGGLHIKP---AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEG 315 (500)
T ss_dssp ---HHHHCTSTTGCGC-S-------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETC
T ss_pred cCCcchhhcccccCcccccc---ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccc
Confidence 1 1347899999998754 2467888999999855689999999 7999999999999999987
Q ss_pred CCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecc
Q 039208 204 PPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWP 270 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P 270 (331)
.. ...+| +|+++.+|+||.+||+||+++ |+++|||||++|
T Consensus 316 ~~------------------~~~l~---------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 316 EP------------------PENLP---------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp SH------------------GCHHH---------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G
T ss_pred cc------------------ccccc---------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC
Confidence 41 11244 466777999999999999997 999999999999
Q ss_pred cccchhhhHHHHHhhhccceeehh------------hHHHH------hHHHHHHHHHH
Q 039208 271 SNGDQMVNMAFLVEKIRDPLTVAE------------RRVIE------GIRAPKEQAVG 310 (331)
Q Consensus 271 ~~~DQ~~na~~v~~~lGvG~~l~~------------~~lm~------~a~~l~~~~~~ 310 (331)
+|+||+.||+++++. |+|+.++. +++|+ ||+++++..+.
T Consensus 369 ~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 369 LFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRD 425 (500)
T ss_dssp CSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT-
T ss_pred CcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 999999999999995 99999985 44443 66666655543
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.98 E-value=1.9e-31 Score=262.70 Aligned_cols=264 Identities=27% Similarity=0.387 Sum_probs=178.7
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc----c-------------hH---------------
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR----G-------------QL--------------- 54 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~----~-------------p~--------------- 54 (331)
..|++++++|++||++|+..||++|+++| |+||++++...... . ++
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~g--h~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERG--HNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcC--CceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 57899999999999999999999999999 99999988743211 0 00
Q ss_pred ----------HHhhhHHHHHHHHHhh--cCCCccEEEEcCcchhHHHHHHHcC-CCeEEEecccHHHHHHHhhc-----c
Q 039208 55 ----------ALLNSPNLHKTLIIQS--KTSNLKTLIIDFFHKVALQVSCSLN-IPTYLFYASSASALAQVLYL-----P 116 (331)
Q Consensus 55 ----------~~~~~~~l~~~l~~l~--~~~~~d~vI~D~~~~~~~~vA~~~g-iP~v~~~~~~~~~~~~~~~~-----~ 116 (331)
...+...+++....+. ...++|++|+|.+..|...+|.+.+ ++...+++.++.......+. |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p 162 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVP 162 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccC
Confidence 0011112222222221 1234999999999889999998875 99999888877665543322 2
Q ss_pred cccC-----CCC---CCCCC-----C---------------------cc-c------ccc-------CCC-----C-CC-
Q 039208 117 NTYG-----TTN---GLKDP-----Q---------------------MV-L------DIP-------CVP-----Y-GE- 141 (331)
Q Consensus 117 ~~~~-----~~~---~~~~l-----~---------------------~~-~------~~p-------~~~-----~-~~- 141 (331)
.... ... ...++ + .. . .+. .++ + .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~ 242 (496)
T KOG1192|consen 163 SPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRP 242 (496)
T ss_pred cccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCC
Confidence 1110 000 00000 0 00 0 000 111 1 12
Q ss_pred CCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCC--eEEEeeH---------------HHHHHHHhc-CCcEEEEEeC
Q 039208 142 QMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSH--CIVFLCF---------------EMAMRLKRS-GAAFLWVVLF 203 (331)
Q Consensus 142 ~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~--~vVyvsf---------------~l~~al~~~-~~~flw~~~~ 203 (331)
..+++++|||++.... ......+.+|++.++.. +|||||| +++.||+.+ +++|+|+++.
T Consensus 243 ~~~~v~~IG~l~~~~~---~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~ 319 (496)
T KOG1192|consen 243 LLPKVIPIGPLHVKDS---KQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRP 319 (496)
T ss_pred CCCCceEECcEEecCc---cccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecC
Confidence 2578999999987641 11122588899988776 9999999 899999999 8899999997
Q ss_pred CCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHh-hcCcccc-------------chhcCCcEeec
Q 039208 204 PPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDV-LSHDSVV-------------AVRTGVPMVAW 269 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~v-L~H~~v~-------------al~~GVP~l~~ 269 (331)
... ..+++++.++ ...+++..+|+||.++ |+|++++ |+++|||||+|
T Consensus 320 ~~~------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~ 380 (496)
T KOG1192|consen 320 DDS------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCV 380 (496)
T ss_pred Ccc------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecC
Confidence 521 0134444333 1234555589999999 5999998 99999999999
Q ss_pred ccccchhhhHHHHHhhhccceeehh
Q 039208 270 PSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 270 P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|+|+||+.||+++++++++++....
T Consensus 381 Plf~DQ~~Na~~i~~~g~~~v~~~~ 405 (496)
T KOG1192|consen 381 PLFGDQPLNARLLVRHGGGGVLDKR 405 (496)
T ss_pred CccccchhHHHHHHhCCCEEEEehh
Confidence 9999999999999998666666543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.96 E-value=2e-27 Score=227.91 Aligned_cols=254 Identities=15% Similarity=0.088 Sum_probs=166.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h------H-------------------
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q------L------------------- 54 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p------~------------------- 54 (331)
|||+|+++|+.||++|+++||++|++|| |+|+|++++.+.... + .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG--h~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG--HEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLL 78 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC--CeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHH
Confidence 6899999999999999999999999999 999999987543221 0 0
Q ss_pred ---HHhhhHHHHHHHHHh---hcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHH------------h---
Q 039208 55 ---ALLNSPNLHKTLIIQ---SKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQV------------L--- 113 (331)
Q Consensus 55 ---~~~~~~~l~~~l~~l---~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~------------~--- 113 (331)
.........+.++.+ ++..++|+||+|.+..++..+|+++|||++.+++++....... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (401)
T cd03784 79 LGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYALLE 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHHHHH
Confidence 000111111222222 2357999999999999999999999999999987764321100 0
Q ss_pred ------hc-ccc---cCCCCCCCCC--------Ccccccc-C-CCCC-CCCCCeEEec-cCCCCCCCCCCCCcchhhhhh
Q 039208 114 ------YL-PNT---YGTTNGLKDP--------QMVLDIP-C-VPYG-EQMPPLYCTG-AILAATTSDNKNDDHTCFSWL 171 (331)
Q Consensus 114 ------~~-~~~---~~~~~~~~~l--------~~~~~~p-~-~~~~-~~~p~~~~vG-p~~~~~~~~~~~~~~~~~~wL 171 (331)
.. ..+ .... .+... +....++ . .+.. ...++...+| ++..... ....+.+++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~ 235 (401)
T cd03784 159 AELWQDLLGAWLRARRRRL-GLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPY--NGPPPPELWLFL 235 (401)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCC--CCCCCHHHHHHH
Confidence 00 000 0000 01000 0000000 0 0111 1223344453 3332221 123456788898
Q ss_pred ccCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCC
Q 039208 172 DKQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDW 238 (331)
Q Consensus 172 d~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~ 238 (331)
++. +++||||| .+.++++..+.+++|..+..... ...+| .
T Consensus 236 ~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----------------~~~~~---------~ 288 (401)
T cd03784 236 AAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----------------AEDLP---------D 288 (401)
T ss_pred hCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----------------ccCCC---------C
Confidence 763 57999999 57788888899999999865210 01122 5
Q ss_pred CcccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 239 GLPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 239 ~~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|+.+.+|+||.++|.|.++. |+++|||+|++|++.||+.||+++++ +|+|+.+..
T Consensus 289 ~v~~~~~~p~~~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~ 354 (401)
T cd03784 289 NVRVVDFVPHDWLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDP 354 (401)
T ss_pred ceEEeCCCCHHHHhhhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCc
Confidence 67777999999999998776 99999999999999999999999999 699998864
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.94 E-value=5.7e-26 Score=217.46 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=161.6
Q ss_pred EcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h----H---------------HHhhhHHHH
Q 039208 13 NPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q----L---------------ALLNSPNLH 63 (331)
Q Consensus 13 ~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p----~---------------~~~~~~~l~ 63 (331)
+.+|++||++|++.||++|+++| |+||+++++.+.+.. | . .+.......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~G--h~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARG--HRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAE 78 (392)
T ss_pred CCCCccccccccHHHHHHHHhCC--CeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHH
Confidence 36799999999999999999999 999999997654321 1 0 000011111
Q ss_pred HH---HHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHh-hcccc------cCC-----------C
Q 039208 64 KT---LIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVL-YLPNT------YGT-----------T 122 (331)
Q Consensus 64 ~~---l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~-~~~~~------~~~-----------~ 122 (331)
.. +.++.+..++|+||+|.++.|+..+|+++|||++.+++.......... ..+.. ... .
T Consensus 79 ~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (392)
T TIGR01426 79 DVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVARL 158 (392)
T ss_pred HHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHHHH
Confidence 11 222234568999999999899999999999999988654321100000 00000 000 0
Q ss_pred CCC---CCCC--c--cc-------cc---c--CCCC-CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEe
Q 039208 123 NGL---KDPQ--M--VL-------DI---P--CVPY-GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFL 182 (331)
Q Consensus 123 ~~~---~~l~--~--~~-------~~---p--~~~~-~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyv 182 (331)
+.+ .+++ . .. .+ | +.+. +...+++.++||+..... +...|.+..+.+++||+
T Consensus 159 ~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~--------~~~~~~~~~~~~~~v~v 230 (392)
T TIGR01426 159 SALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRK--------EDGSWERPGDGRPVVLI 230 (392)
T ss_pred HHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCcc--------ccCCCCCCCCCCCEEEE
Confidence 000 0010 0 00 00 0 0110 123567999999765331 12347776667899999
Q ss_pred eH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHH
Q 039208 183 CF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVD 250 (331)
Q Consensus 183 sf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~ 250 (331)
|| ++++++.+.+.+++|..+.... .+....+| .++.+.+|+||.+
T Consensus 231 s~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~--------------~~~~~~~~---------~~v~~~~~~p~~~ 287 (392)
T TIGR01426 231 SLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD--------------PADLGELP---------PNVEVRQWVPQLE 287 (392)
T ss_pred ecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC--------------hhHhccCC---------CCeEEeCCCCHHH
Confidence 98 5788888899999998865411 00011133 4666779999999
Q ss_pred hhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 251 VLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 251 vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
+|+|+++. |+++|||+|++|...||+.||+++++ +|+|..+..
T Consensus 288 ll~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~ 341 (392)
T TIGR01426 288 ILKKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP 341 (392)
T ss_pred HHhhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc
Confidence 99988876 99999999999999999999999999 699998863
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-21 Score=186.02 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=165.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h------------------HHHhh
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q------------------LALLN 58 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p------------------~~~~~ 58 (331)
+|||+++..|++||++|++.|+++|.++| |+|+|+++..+.+.. + +.. .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~g--heV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~ 77 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRG--HEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRR-L 77 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcC--CeEEEEeCHHHHHHHHHhCcceeeccccCChhhhhhhhhhccchhHH-H
Confidence 47999999999999999999999999999 999999987654321 0 110 1
Q ss_pred hHHHHHHHHH---hhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHh-hcccc-cC-CCC-CCCCCCc-
Q 039208 59 SPNLHKTLII---QSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVL-YLPNT-YG-TTN-GLKDPQM- 130 (331)
Q Consensus 59 ~~~l~~~l~~---l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~-~~~~~-~~-~~~-~~~~l~~- 130 (331)
...+...+.+ ++.+..+|.++.|.-...+ .+++..++|++.............. ..+.. .. ... .+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (406)
T COG1819 78 LQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPR 156 (406)
T ss_pred hhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccccccccccccChh
Confidence 1222111212 2234578888877654433 6666677877664322211111000 00000 00 000 0000000
Q ss_pred ---------------------cccc-----c---CC----C--C-CC-------CCCCeEEeccCCCCCCCCCCCCcchh
Q 039208 131 ---------------------VLDI-----P---CV----P--Y-GE-------QMPPLYCTGAILAATTSDNKNDDHTC 167 (331)
Q Consensus 131 ---------------------~~~~-----p---~~----~--~-~~-------~~p~~~~vGp~~~~~~~~~~~~~~~~ 167 (331)
.+.+ + .. . + +. .+.....+||+.... ..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~ 229 (406)
T COG1819 157 LVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEA-------ANEL 229 (406)
T ss_pred hccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccc-------cccC
Confidence 0000 0 00 0 0 00 011222334433222 2334
Q ss_pred hhhhccCCCCeEEEeeH-----------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhc
Q 039208 168 FSWLDKQPSHCIVFLCF-----------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTR 236 (331)
Q Consensus 168 ~~wLd~~~~~~vVyvsf-----------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~ 236 (331)
..|+.. ++++||+|| .+.+++.+++.+||........ ....+|
T Consensus 230 ~~~~~~--d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~----------------~~~~~p-------- 283 (406)
T COG1819 230 PYWIPA--DRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARD----------------TLVNVP-------- 283 (406)
T ss_pred cchhcC--CCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEecccccc----------------ccccCC--------
Confidence 445332 468999999 5788999999999998876210 022355
Q ss_pred CCCcccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh-----------
Q 039208 237 DWGLPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------- 294 (331)
Q Consensus 237 ~~~~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------- 294 (331)
.|+.+..|+||.++|.|.++. ||++|||+|++|...||+.||.++++ +|+|..+..
T Consensus 284 -~n~~v~~~~p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~l~~~~l~~a 361 (406)
T COG1819 284 -DNVIVADYVPQLELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEELTEERLRAA 361 (406)
T ss_pred -CceEEecCCCHHHHhhhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcccCCHHHHHHH
Confidence 566777999999999988887 99999999999999999999999999 699998873
Q ss_pred -hHHHH------hHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039208 295 -RRVIE------GIRAPKEQAVGALSEGGRSLAVVAELAES 328 (331)
Q Consensus 295 -~~lm~------~a~~l~~~~~~a~~~ggss~~~l~~~v~~ 328 (331)
+++|+ +++++++.+++. +| .+...+.+++
T Consensus 362 v~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~ 397 (406)
T COG1819 362 VNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEE 397 (406)
T ss_pred HHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHH
Confidence 34443 555555544442 33 5555666555
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.33 E-value=4.1e-11 Score=111.33 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=133.6
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------h------------H---HHhh----
Q 039208 8 IRLFFNPSP-GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---------Q------------L---ALLN---- 58 (331)
Q Consensus 8 ~~i~~~p~p-~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p------------~---~~~~---- 58 (331)
|||++.... |.||+.-.+.|+++| +| |+|++++........ | . +...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RG--HEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--cc--CceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 678877765 789999999999999 69 999999876432110 1 0 0001
Q ss_pred ---hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccccc------CCCC-CC--C
Q 039208 59 ---SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTY------GTTN-GL--K 126 (331)
Q Consensus 59 ---~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~------~~~~-~~--~ 126 (331)
...+++++ ++++..+||+||+|. .+.+...|+..|||++.+.......... ..++... .... .. .
T Consensus 77 ~~~~~~~~~~~-~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (318)
T PF13528_consen 77 ARLARRIRREI-RWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN-FWLPWDQDFGRLIERYIDRYHFP 153 (318)
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc-CCcchhhhHHHHHHHhhhhccCC
Confidence 11112222 233556899999995 4456788888999999876554321100 0000000 0000 00 0
Q ss_pred CCCccccccCCCCCCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------HHHHHHHhcC-CcEEE
Q 039208 127 DPQMVLDIPCVPYGEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------EMAMRLKRSG-AAFLW 199 (331)
Q Consensus 127 ~l~~~~~~p~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------~l~~al~~~~-~~flw 199 (331)
.....+..+.........+...+||+..... .+.-. .+...|+|+| ++.++++..+ ..|+.
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~----------~~~~~--~~~~~iLv~~gg~~~~~~~~~l~~~~~~~~~v 221 (318)
T PF13528_consen 154 PADRRLALSFYPPLPPFFRVPFVGPIIRPEI----------RELPP--EDEPKILVYFGGGGPGDLIEALKALPDYQFIV 221 (318)
T ss_pred cccceecCCccccccccccccccCchhcccc----------cccCC--CCCCEEEEEeCCCcHHHHHHHHHhCCCCeEEE
Confidence 0000000000000011123445666654321 11111 1235677777 7888888876 56655
Q ss_pred EEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCccccccc--CHHHhhcCcccc-----------chhcCCcE
Q 039208 200 VVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWA--PQVDVLSHDSVV-----------AVRTGVPM 266 (331)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~--PQ~~vL~H~~v~-----------al~~GVP~ 266 (331)
. +....+ . ...|+.+.++. .-.+.|+.+++. +++.|+|+
T Consensus 222 ~-g~~~~~------------------~---------~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~ 273 (318)
T PF13528_consen 222 F-GPNAAD------------------P---------RPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPA 273 (318)
T ss_pred E-cCCccc------------------c---------cCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCE
Confidence 5 443100 0 01344444543 223455555554 99999999
Q ss_pred eeccc--ccchhhhHHHHHhhhccceeehh
Q 039208 267 VAWPS--NGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 267 l~~P~--~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|++|. +.||..||+.+++ +|+|..+..
T Consensus 274 l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~ 302 (318)
T PF13528_consen 274 LVIPRPGQDEQEYNARKLEE-LGLGIVLSQ 302 (318)
T ss_pred EEEeCCCCchHHHHHHHHHH-CCCeEEccc
Confidence 99999 8899999999999 699999863
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.32 E-value=8.3e-10 Score=104.37 Aligned_cols=247 Identities=13% Similarity=0.072 Sum_probs=134.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------h--------H-----H---HhhhHHHHHH
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------Q--------L-----A---LLNSPNLHKT 65 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------p--------~-----~---~~~~~~l~~~ 65 (331)
+|++..-++-||+.|-+.+|++|.++| |+|+|+++....+.. + + + +.....+...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDN--WDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCC--CEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 577777777899999999999999999 999999876543211 1 0 0 0111111222
Q ss_pred HH--HhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCCCCCccccccCCCCCC
Q 039208 66 LI--IQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLKDPQMVLDIPCVPYGE 141 (331)
Q Consensus 66 l~--~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 141 (331)
++ ++++..+||+||....+. .+..+|.-+|+|++.+-.............+. .+. -+..++. .. ..
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~-a~~--v~~~f~~-----~~--~~ 150 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIALRF-ASK--IFVTFEE-----AA--KH 150 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHh-hCE--EEEEccc-----hh--hh
Confidence 11 223567999999876443 24556666799998875543222221111000 000 0000000 00 01
Q ss_pred C-CCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH---------H-HHHHHHhc--CCcEEEEEeCCCCch
Q 039208 142 Q-MPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF---------E-MAMRLKRS--GAAFLWVVLFPPLED 208 (331)
Q Consensus 142 ~-~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf---------~-l~~al~~~--~~~flw~~~~~~~~~ 208 (331)
. ..++..+|+-+..... ........+-+.-.+++.+|+|.- + +.+++... +.+++|..+....
T Consensus 151 ~~~~k~~~tG~Pvr~~~~--~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~~~~vv~~~G~~~~-- 226 (352)
T PRK12446 151 LPKEKVIYTGSPVREEVL--KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLLKYQIVHLCGKGNL-- 226 (352)
T ss_pred CCCCCeEEECCcCCcccc--cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhccCcEEEEEeCCchH--
Confidence 1 1357778865433210 011111111222223456788865 2 22333332 4678888876411
Q ss_pred hhhhhhhhhchhhhhhccCchhHHhhhcCCCccccccc-C-HHHhhcCcccc-----------chhcCCcEeecccc---
Q 039208 209 EFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWA-P-QVDVLSHDSVV-----------AVRTGVPMVAWPSN--- 272 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~-P-Q~~vL~H~~v~-----------al~~GVP~l~~P~~--- 272 (331)
+.. +. +. .+..+.+|. + -.++++++++. ++++|+|+|.+|+.
T Consensus 227 -----------~~~----~~-----~~--~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~ 284 (352)
T PRK12446 227 -----------DDS----LQ-----NK--EGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFA 284 (352)
T ss_pred -----------HHH----Hh-----hc--CCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCC
Confidence 000 00 00 121222444 2 23566666655 99999999999985
Q ss_pred --cchhhhHHHHHhhhccceeehh
Q 039208 273 --GDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 273 --~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.||..||+.+++ .|+|..+..
T Consensus 285 ~~~~Q~~Na~~l~~-~g~~~~l~~ 307 (352)
T PRK12446 285 SRGDQILNAESFER-QGYASVLYE 307 (352)
T ss_pred CCchHHHHHHHHHH-CCCEEEcch
Confidence 489999999999 599998853
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.22 E-value=1.6e-10 Score=107.84 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=125.9
Q ss_pred EEEE-EcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------h------------HHHhh------
Q 039208 9 RLFF-NPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------Q------------LALLN------ 58 (331)
Q Consensus 9 ~i~~-~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------p------------~~~~~------ 58 (331)
||++ +...|.||+.|.+.++++|.+ | |+|+++++....... | ..+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g--~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-D--YEVSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-C--CeEEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccc
Confidence 3555 445577999999999999999 9 999998765422110 1 00000
Q ss_pred -hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCC--------CCCCCC
Q 039208 59 -SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTN--------GLKDPQ 129 (331)
Q Consensus 59 -~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~ 129 (331)
...+.+.. ++++..+||+||+| +.+.+..+|+.+|||++.+.-+... ..+....... .+....
T Consensus 78 ~~~~~~~~~-~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00661 78 PKKAIRREI-NIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYPLKTDLIVYPTMAALRIFNERC 149 (321)
T ss_pred cHHHHHHHH-HHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCCcccchhHHHHHHHHHHhcccc
Confidence 01111111 23356789999999 5566788999999999977653221 0111000000 000000
Q ss_pred ccccccCCCC-CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------HHHHHHHhcCC-cEEEEE
Q 039208 130 MVLDIPCVPY-GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------EMAMRLKRSGA-AFLWVV 201 (331)
Q Consensus 130 ~~~~~p~~~~-~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------~l~~al~~~~~-~flw~~ 201 (331)
+.+..+..+. ....|+.. +.+ ..+ ....+..+|... +...|+|.+ .+.++|.+.+. .|++
T Consensus 150 ~~~~~~~~~~~~~~~p~~~--~~~-~~~-----~~~~~~~~~~~~--~~~~iLv~~g~~~~~~l~~~l~~~~~~~~i~-- 217 (321)
T TIGR00661 150 ERFIVPDYPFPYTICPKII--KNM-EGP-----LIRYDVDDVDNY--GEDYILVYIGFEYRYKILELLGKIANVKFVC-- 217 (321)
T ss_pred ceEeeecCCCCCCCCcccc--ccC-CCc-----ccchhhhccccC--CCCcEEEECCcCCHHHHHHHHHhCCCeEEEE--
Confidence 0000000000 00011110 000 000 001122233222 234455555 67788877654 4442
Q ss_pred eCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccC--HHHhhcCcccc-----------chhcCCcEee
Q 039208 202 LFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAP--QVDVLSHDSVV-----------AVRTGVPMVA 268 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~P--Q~~vL~H~~v~-----------al~~GVP~l~ 268 (331)
...... ...++ .++.+.+|.| ..+.|+.+++. ++++|+|++.
T Consensus 218 ~~~~~~----------------~~~~~---------~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ 272 (321)
T TIGR00661 218 YSYEVA----------------KNSYN---------ENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIV 272 (321)
T ss_pred eCCCCC----------------ccccC---------CCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEE
Confidence 222100 01122 3455558887 23444544444 9999999999
Q ss_pred ccccc--chhhhHHHHHhhhccceeehhh
Q 039208 269 WPSNG--DQMVNMAFLVEKIRDPLTVAER 295 (331)
Q Consensus 269 ~P~~~--DQ~~na~~v~~~lGvG~~l~~~ 295 (331)
+|..+ ||..||+.+++ .|+|+.++..
T Consensus 273 ip~~~~~eQ~~na~~l~~-~g~~~~l~~~ 300 (321)
T TIGR00661 273 IPDLGQFEQGNNAVKLED-LGCGIALEYK 300 (321)
T ss_pred EcCCCcccHHHHHHHHHH-CCCEEEcChh
Confidence 99965 89999999999 5999998753
No 31
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.92 E-value=6.2e-07 Score=84.64 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=145.5
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC-C-c----c------hH--------HH---hhhHHHH
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT-L-R----G------QL--------AL---LNSPNLH 63 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~-~-~----~------p~--------~~---~~~~~l~ 63 (331)
+|||+++.-+..||...++.|++.|.++| |+|++++..... . . . +. .. .....+.
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRG--WEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLK 78 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCC--CEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHH
Confidence 37899998877899999999999999999 999999875421 0 0 0 10 00 0001111
Q ss_pred H--HHHHhhcCCCccEEEEcCcc-hhH-HHHHHHcCCCeEEEecccHHHH---HHHhhcccccCCCCCCCCCCccccccC
Q 039208 64 K--TLIIQSKTSNLKTLIIDFFH-KVA-LQVSCSLNIPTYLFYASSASAL---AQVLYLPNTYGTTNGLKDPQMVLDIPC 136 (331)
Q Consensus 64 ~--~l~~l~~~~~~d~vI~D~~~-~~~-~~vA~~~giP~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~p~ 136 (331)
. -+.++++..+||+|++.... .+. ..+++..++|.+.......... ..+... +... ...+.. .
T Consensus 79 ~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~----d~ii--~~~~~~----~ 148 (357)
T PRK00726 79 GVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFA----KKVA--TAFPGA----F 148 (357)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHh----chhe--ECchhh----h
Confidence 1 12233456689999999632 333 3445557999986532211000 001000 0000 000000 0
Q ss_pred CCCCCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH---------H-HHHHHHhcCC--cEEEEEeCC
Q 039208 137 VPYGEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF---------E-MAMRLKRSGA--AFLWVVLFP 204 (331)
Q Consensus 137 ~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf---------~-l~~al~~~~~--~flw~~~~~ 204 (331)
. .....++..+|.-...... . . ...-.+ ++..+...+|++.- . +.+++.+... .++|.++..
T Consensus 149 ~--~~~~~~i~vi~n~v~~~~~-~-~-~~~~~~-~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g 222 (357)
T PRK00726 149 P--EFFKPKAVVTGNPVREEIL-A-L-AAPPAR-LAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKG 222 (357)
T ss_pred h--ccCCCCEEEECCCCChHhh-c-c-cchhhh-ccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCC
Confidence 0 0112356666644332100 0 0 000011 11112234444421 2 3366665543 345555553
Q ss_pred CCchhhhhhhhhhchhhhhhccCchhHHhhhc-CCCcccccccC-HHHhhcCcccc-----------chhcCCcEeeccc
Q 039208 205 PLEDEFRQTLTVADAEASAELFLPEGFVERTR-DWGLPVKSWAP-QVDVLSHDSVV-----------AVRTGVPMVAWPS 271 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~-~~~~vv~~W~P-Q~~vL~H~~v~-----------al~~GVP~l~~P~ 271 (331)
.. +.+.+... +-++.+.+|.. -.++++..++. |+++|+|+|+.|.
T Consensus 223 ~~----------------------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 223 DL----------------------EEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPL 280 (357)
T ss_pred cH----------------------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecC
Confidence 10 01111111 11244446663 23445444443 9999999999997
Q ss_pred ----ccchhhhHHHHHhhhccceeehh------------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 272 ----NGDQMVNMAFLVEKIRDPLTVAE------------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 272 ----~~DQ~~na~~v~~~lGvG~~l~~------------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
.+||..|+..+.+. |.|..+.. +++++ ..+++++.+++- .+..++.+-.+.+.+.+++
T Consensus 281 ~~~~~~~~~~~~~~i~~~-~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 281 PHAADDHQTANARALVDA-GAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL-GKPDAAERLADLIEELARK 357 (357)
T ss_pred CCCCcCcHHHHHHHHHHC-CCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHhhC
Confidence 47899999999995 99998852 22232 445555555443 4566677777777666654
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=1.3e-06 Score=82.51 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=58.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCce-EEEEEeCCCCCCcc------------h--------HHHhhhH---HHHH
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYF-SVTIIISTFPTLRG------------Q--------LALLNSP---NLHK 64 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h-~Vt~~~~~~~~~~~------------p--------~~~~~~~---~l~~ 64 (331)
+|++.-.++-||+.|-+.|+++|.++| . +|.++.+....+.. + .+..... .+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g--~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG--WEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKG 79 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC--ccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHH
Confidence 577888888899999999999999999 7 57776554333221 0 1111111 1111
Q ss_pred H--HHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEecc
Q 039208 65 T--LIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 65 ~--l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~ 104 (331)
. ..++++..+||+||.-..+. .....|..+|||.+..-+.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn 123 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN 123 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC
Confidence 1 11223456999999965554 3445556679999987544
No 33
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.85 E-value=1.9e-09 Score=87.84 Aligned_cols=96 Identities=15% Similarity=0.013 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h------H-------------HHh--hhH
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q------L-------------ALL--NSP 60 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p------~-------------~~~--~~~ 60 (331)
|+|++.++.||++|++.|+++|.+|| |+|++.+++.+.... | + .+. ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG--h~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG--HEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLE 78 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC--CeEEEeecccceecccccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhh
Confidence 68999999999999999999999999 999999987654321 0 0 000 111
Q ss_pred HHHHHHHHhh--------cCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHH
Q 039208 61 NLHKTLIIQS--------KTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSAS 107 (331)
Q Consensus 61 ~l~~~l~~l~--------~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~ 107 (331)
.+.+.+.+.. .....|+++.+.....+..+|+++|||++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 79 EAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1112222211 0135778888888888999999999999998776543
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.60 E-value=6.8e-06 Score=77.08 Aligned_cols=91 Identities=10% Similarity=-0.097 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-------c-----hH--------HH---hhhHHHHH-
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-------G-----QL--------AL---LNSPNLHK- 64 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-------~-----p~--------~~---~~~~~l~~- 64 (331)
||++.....-||+.....|++.|.++| |+|++++....... . |+ ++ .....+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG--AEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGV 78 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC--CEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 477888888899999999999999999 99999986432110 0 11 00 00001111
Q ss_pred -HHHHhhcCCCccEEEEcCc--chhHHHHHHHcCCCeEEE
Q 039208 65 -TLIIQSKTSNLKTLIIDFF--HKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 65 -~l~~l~~~~~~d~vI~D~~--~~~~~~vA~~~giP~v~~ 101 (331)
.+.++++..+||+|++... ..++..+|...|+|.+..
T Consensus 79 ~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 79 LQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 1223345668999998753 224455677779999864
No 35
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.54 E-value=1.9e-05 Score=75.19 Aligned_cols=89 Identities=16% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCcccccccCHH-HhhcCcccc-----------chhcCCcEeec-ccccchhhhHHHHHhhhccceeehh--------hH
Q 039208 238 WGLPVKSWAPQV-DVLSHDSVV-----------AVRTGVPMVAW-PSNGDQMVNMAFLVEKIRDPLTVAE--------RR 296 (331)
Q Consensus 238 ~~~vv~~W~PQ~-~vL~H~~v~-----------al~~GVP~l~~-P~~~DQ~~na~~v~~~lGvG~~l~~--------~~ 296 (331)
.++.+.+|.++. ++++++++. |+++|+|+|+. |..+.|..|+..+.+. |.|+.... ++
T Consensus 256 ~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~~~~~l~~~i~~ 334 (380)
T PRK13609 256 DALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIRDDEEVFAKTEA 334 (380)
T ss_pred CcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEECCHHHHHHHHHH
Confidence 356666888764 677877774 99999999994 7777788999998884 99887643 33
Q ss_pred HHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039208 297 VIE---GIRAPKEQAVGALSEGGRSLAVVAELAES 328 (331)
Q Consensus 297 lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~~ 328 (331)
+++ ..+++++.+++. .+..++.+-.+.+.+.
T Consensus 335 ll~~~~~~~~m~~~~~~~-~~~~s~~~i~~~i~~~ 368 (380)
T PRK13609 335 LLQDDMKLLQMKEAMKSL-YLPEPADHIVDDILAE 368 (380)
T ss_pred HHCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHh
Confidence 332 334444444432 3344555555554443
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.29 E-value=0.00022 Score=66.72 Aligned_cols=91 Identities=9% Similarity=-0.083 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC-----c--c-----hH-----------HHh---hhHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-----R--G-----QL-----------ALL---NSPN 61 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~-----~--~-----p~-----------~~~---~~~~ 61 (331)
|||+|+.-...||+.....|+++|.++| |+|++++.+.... . . +. +.. ....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g--~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 78 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRG--VEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKA 78 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCC--CEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 3799999888999997789999999999 9999998633211 0 0 10 000 0011
Q ss_pred HHHHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEE
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLF 101 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~ 101 (331)
+. .+.++++..+||+|++..... ++..+++..|+|.+.+
T Consensus 79 ~~-~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 79 VF-QARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HH-HHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 11 123334567899999875332 3444566679999753
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.18 E-value=2.4e-05 Score=71.62 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=114.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH--HHh---hhHHHHHHHHHhhcCCCccEEEEcCc
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL--ALL---NSPNLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~--~~~---~~~~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
|.||+.=.+.||++|.++| |+|+|++........ +. +.. ......+++ ++++..++|+||.|.+
T Consensus 13 G~GHv~Rcl~LA~~l~~~g--~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~-~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQG--AEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELI-NLLEEEKFDILIVDHY 89 (279)
T ss_pred cccHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHH-HHHHhcCCCEEEEcCC
Confidence 6799999999999999999 999999876433210 10 000 001122222 2234458999999986
Q ss_pred ch--hHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCCCCCccccccCCCCCCCCCCeEEecc---CCCCCCC
Q 039208 84 HK--VALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLKDPQMVLDIPCVPYGEQMPPLYCTGA---ILAATTS 158 (331)
Q Consensus 84 ~~--~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~p~~~~vGp---~~~~~~~ 158 (331)
.. .-....++.+.+.+.+--...... +...+... .. . .+. ..+..+ ......+..|| ++..
T Consensus 90 ~~~~~~~~~~k~~~~~l~~iDD~~~~~~----~~D~vin~--~~-~-~~~--~~y~~~-~~~~~~~l~G~~Y~~lr~--- 155 (279)
T TIGR03590 90 GLDADWEKLIKEFGRKILVIDDLADRPH----DCDLLLDQ--NL-G-ADA--SDYQGL-VPANCRLLLGPSYALLRE--- 155 (279)
T ss_pred CCCHHHHHHHHHhCCeEEEEecCCCCCc----CCCEEEeC--CC-C-cCH--hHhccc-CcCCCeEEecchHHhhhH---
Confidence 43 112233344555555431110000 00000000 00 0 000 000000 00113456676 2211
Q ss_pred CCCCCcchhhhhh---ccCCCCeEEEeeH----------HHHHHHHhc--CCcEEEEEeCCCCchhhhhhhhhhchhhhh
Q 039208 159 DNKNDDHTCFSWL---DKQPSHCIVFLCF----------EMAMRLKRS--GAAFLWVVLFPPLEDEFRQTLTVADAEASA 223 (331)
Q Consensus 159 ~~~~~~~~~~~wL---d~~~~~~vVyvsf----------~l~~al~~~--~~~flw~~~~~~~~~~~~~~~~~~~~~~~~ 223 (331)
+..+.- ..+++...|+++| .+.++|.+. +.++.+++++...
T Consensus 156 -------eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~----------------- 211 (279)
T TIGR03590 156 -------EFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNP----------------- 211 (279)
T ss_pred -------HHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCc-----------------
Confidence 111100 0111124688998 677777764 3456777766421
Q ss_pred hccCchhHHhhhc-CCCcccccccCHH-HhhcCcccc----------chhcCCcEeecccccchhhhHHH
Q 039208 224 ELFLPEGFVERTR-DWGLPVKSWAPQV-DVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAF 281 (331)
Q Consensus 224 ~~~lp~~f~~~~~-~~~~vv~~W~PQ~-~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~ 281 (331)
..+.+.+..+ ..++.+.++.++. ++++..++. +++.|+|+|++|+..+|..||+.
T Consensus 212 ---~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 212 ---NLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAGSTSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred ---CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCchHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 1111111111 2355566888875 777777775 99999999999999999999975
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.08 E-value=0.00085 Score=64.39 Aligned_cols=88 Identities=9% Similarity=0.182 Sum_probs=56.9
Q ss_pred CcccccccCHH-HhhcCcccc-----------chhcCCcEeec-ccccchhhhHHHHHhhhccceeehh--------hHH
Q 039208 239 GLPVKSWAPQV-DVLSHDSVV-----------AVRTGVPMVAW-PSNGDQMVNMAFLVEKIRDPLTVAE--------RRV 297 (331)
Q Consensus 239 ~~vv~~W~PQ~-~vL~H~~v~-----------al~~GVP~l~~-P~~~DQ~~na~~v~~~lGvG~~l~~--------~~l 297 (331)
++.+.+|..+. ++++..++. |+++|+|+|+. |.-+.|..|+..+.+. |+|+.... +++
T Consensus 257 ~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~~~~~l~~~i~~l 335 (391)
T PRK13608 257 NVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIADTPEEAIKIVASL 335 (391)
T ss_pred CeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeCCHHHHHHHHHHH
Confidence 45555777543 455555554 99999999998 7777778999999995 99987754 233
Q ss_pred HH---hHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039208 298 IE---GIRAPKEQAVGALSEGGRSLAVVAELAES 328 (331)
Q Consensus 298 m~---~a~~l~~~~~~a~~~ggss~~~l~~~v~~ 328 (331)
++ +.+++++.+++. .+.-+..+-.+++.+.
T Consensus 336 l~~~~~~~~m~~~~~~~-~~~~s~~~i~~~l~~l 368 (391)
T PRK13608 336 TNGNEQLTNMISTMEQD-KIKYATQTICRDLLDL 368 (391)
T ss_pred hcCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 32 344555555543 3345555555555443
No 39
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.96 E-value=0.0019 Score=59.80 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-----------c--hH---HHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-----------G--QL---ALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-----------~--p~---~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
-|+.+.+..|+++|.++| |+|+++++...... . +. ......... .+.+..+..+||+|+..
T Consensus 14 ~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdii~~~ 90 (364)
T cd03814 14 NGVVRTLQRLVEHLRARG--HEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRR-RVRRLLDAFAPDVVHIA 90 (364)
T ss_pred cceehHHHHHHHHHHHCC--CEEEEEeCCchhhccCCCCceeecccccCcccceEecccchh-hHHHHHHhcCCCEEEEe
Confidence 589999999999999999 99999987643210 0 10 000011111 12222244589999876
Q ss_pred Ccch---hHHHHHHHcCCCeEEEecc
Q 039208 82 FFHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 82 ~~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
.... .+..+++..++|.+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (364)
T cd03814 91 TPGPLGLAALRAARRLGIPVVTSYHT 116 (364)
T ss_pred ccchhhHHHHHHHHHcCCCEEEEEec
Confidence 4332 3456677789998876543
No 40
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.93 E-value=0.0021 Score=61.43 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=38.4
Q ss_pred cccccccCHH-HhhcCcccc-----------chhcCCcEeecccccchh-hhHHHHHhhhccceeeh
Q 039208 240 LPVKSWAPQV-DVLSHDSVV-----------AVRTGVPMVAWPSNGDQM-VNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 240 ~vv~~W~PQ~-~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~-~na~~v~~~lGvG~~l~ 293 (331)
+.+.+|.++. ++++..++. |+++|+|+|+.+....|. .|+..+++. |.|+.+.
T Consensus 267 v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~~ 332 (382)
T PLN02605 267 VKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFSE 332 (382)
T ss_pred eEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-CceeecC
Confidence 4444776643 344444443 999999999998776775 799999985 9998764
No 41
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.50 E-value=0.078 Score=48.70 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--h-------------------------HHHhhhHHHHHHHHHhh
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--Q-------------------------LALLNSPNLHKTLIIQS 70 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p-------------------------~~~~~~~~l~~~l~~l~ 70 (331)
-|+-.-...|+++|.++| |+|+++++....... . ........+...+.+++
T Consensus 15 gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (359)
T cd03823 15 GGAEVVAHDLAEALAKRG--HEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLL 92 (359)
T ss_pred cchHHHHHHHHHHHHhcC--CceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHH
Confidence 478889999999999999 999999875432210 0 00111122223334444
Q ss_pred cCCCccEEEEcCcchhH---HHHHHHcCCCeEEEec
Q 039208 71 KTSNLKTLIIDFFHKVA---LQVSCSLNIPTYLFYA 103 (331)
Q Consensus 71 ~~~~~d~vI~D~~~~~~---~~vA~~~giP~v~~~~ 103 (331)
+..++|+|++.....+. ...+++.++|.+....
T Consensus 93 ~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h 128 (359)
T cd03823 93 EDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLH 128 (359)
T ss_pred HHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEe
Confidence 45689999887654332 3456778999887543
No 42
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.32 E-value=0.063 Score=52.70 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=54.9
Q ss_pred CcccEEEEEcCCC-----CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc----c----------hHHHhhh--HHHH
Q 039208 5 WIIIRLFFNPSPG-----SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR----G----------QLALLNS--PNLH 63 (331)
Q Consensus 5 ~~~~~i~~~p~p~-----~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~----~----------p~~~~~~--~~l~ 63 (331)
..+|||+++.-+. -|=-+=+..|++.|.++| |+|+++++...... . |+..... ..+.
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G--~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG--DEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC--CeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC
Confidence 5578999885332 233456789999999999 99999987532210 0 1110000 0000
Q ss_pred HHHHHhhcCCCccEEEEcCcc--hh-HHHHHHHcCCCeEEEe
Q 039208 64 KTLIIQSKTSNLKTLIIDFFH--KV-ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~~~--~~-~~~vA~~~giP~v~~~ 102 (331)
.-+.++++..+||+|.+.... .+ +..+|+..|+|.+...
T Consensus 134 ~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 134 PRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 012223344689998654322 22 3446777899998743
No 43
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.28 E-value=0.11 Score=47.94 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------hH-------HH--hhhHHHHHHHHHhhcCCCccEEE
Q 039208 16 PGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------QL-------AL--LNSPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 16 p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------p~-------~~--~~~~~l~~~l~~l~~~~~~d~vI 79 (331)
...|+-.-...+++.|.++| |+|+++++....... .. .. .........+....+..++|+|+
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~ 89 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRG--HEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILKELGPDIVH 89 (374)
T ss_pred CCCCeehHHHHHHHHHHHcC--CeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHHhhcCCCEEE
Confidence 35689999999999999999 999999875433211 00 00 00011112222333456899998
Q ss_pred EcCcch---hHHHHHHHcCCCeEEEeccc
Q 039208 80 IDFFHK---VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 80 ~D~~~~---~~~~vA~~~giP~v~~~~~~ 105 (331)
...... .+..++++.++|.+......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (374)
T cd03817 90 THTPFSLGLLGLRVARKLGIPVVATYHTM 118 (374)
T ss_pred ECCchhhhhHHHHHHHHcCCCEEEEecCC
Confidence 765433 24456778899988765443
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.21 E-value=0.11 Score=48.93 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------------hH-----H--HhhhHH----HHHHHHHhhcC
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------------QL-----A--LLNSPN----LHKTLIIQSKT 72 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------------p~-----~--~~~~~~----l~~~l~~l~~~ 72 (331)
-|+-..+..|++.|+++| |+|++++........ +. . ...... ...++. ..+.
T Consensus 21 GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 97 (398)
T cd03800 21 GGQNVYVLELARALARLG--HEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLR-FLRR 97 (398)
T ss_pred CceeehHHHHHHHHhccC--ceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHH-HHHh
Confidence 368889999999999999 999999864332110 10 0 000111 112222 2233
Q ss_pred C--CccEEEEcCcch--hHHHHHHHcCCCeEEEe
Q 039208 73 S--NLKTLIIDFFHK--VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 73 ~--~~d~vI~D~~~~--~~~~vA~~~giP~v~~~ 102 (331)
. ++|+|++..... .+..+++.+|+|++...
T Consensus 98 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (398)
T cd03800 98 EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTF 131 (398)
T ss_pred cCCCccEEEEecCccchHHHHHHhhcCCceEEEe
Confidence 3 899998875332 45567788899987643
No 45
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.86 E-value=0.045 Score=49.37 Aligned_cols=243 Identities=10% Similarity=0.056 Sum_probs=128.9
Q ss_pred cEEEEEcCC----CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHH---HHhhcCCCccEEEE
Q 039208 8 IRLFFNPSP----GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTL---IIQSKTSNLKTLII 80 (331)
Q Consensus 8 ~~i~~~p~p----~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l---~~l~~~~~~d~vI~ 80 (331)
|||+|++-. |.||+.=++.||++|.++| ..++|++.....+ ++......+.... ...+++.++|++|.
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~--~~~~fl~k~~~e~---~~~~~~~~f~~~~~~~~n~ik~~k~d~lI~ 75 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRG--FACLFLTKQDIEA---IIHKVYEGFKVLEGRGNNLIKEEKFDLLIF 75 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcC--ceEEEecccchhh---hhhhhhhhccceeeecccccccccCCEEEE
Confidence 578888755 4699999999999999999 9999998764332 1111111111110 11234679999999
Q ss_pred cCcch---hHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCCCCCccccccCCCCCCCCCCeEEeccCCCCCC
Q 039208 81 DFFHK---VALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLKDPQMVLDIPCVPYGEQMPPLYCTGAILAATT 157 (331)
Q Consensus 81 D~~~~---~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~p~~~~vGp~~~~~~ 157 (331)
|.... ....+..+.|.+.+.|-.-....+-...-. ... .+.+..... . .....-++.||-...-.
T Consensus 76 Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~i--vN~---~~~a~~~y~---~----v~~k~~~~lGp~y~~lr 143 (318)
T COG3980 76 DSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLI--VNA---ILNANDYYG---L----VPNKTRYYLGPGYAPLR 143 (318)
T ss_pred eccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhh--hhh---hhcchhhcc---c----cCcceEEEecCCceecc
Confidence 98765 445677789999998754332211100000 000 000000000 0 01122466666433210
Q ss_pred CCCCCCcchhhhhhccCCCCeEEEeeH----------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccC
Q 039208 158 SDNKNDDHTCFSWLDKQPSHCIVFLCF----------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFL 227 (331)
Q Consensus 158 ~~~~~~~~~~~~wLd~~~~~~vVyvsf----------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~l 227 (331)
+.-..+. .+-+.. + .--|+|+| +++..|.+....+-.+++.... -
T Consensus 144 ~eF~~~r---~~~~~r-~-~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p--------------------~ 198 (318)
T COG3980 144 PEFYALR---EENTER-P-KRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNP--------------------T 198 (318)
T ss_pred HHHHHhH---HHHhhc-c-hheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCc--------------------c
Confidence 0000000 111211 1 22378888 6777777766555556653210 1
Q ss_pred chhHHhhhc-CCCcccccccC-HHHhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 228 PEGFVERTR-DWGLPVKSWAP-QVDVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 228 p~~f~~~~~-~~~~vv~~W~P-Q~~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
++....+.. ..++....-.. -.+++..++.. ++.-|+|-+++|+.-.|-.-|+..+. +|+-..+.
T Consensus 199 l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~ 275 (318)
T COG3980 199 LKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAGSTLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLG 275 (318)
T ss_pred hhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccchHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhcc
Confidence 112222221 11111101111 12233333322 99999999999999999999999998 58877774
No 46
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.82 E-value=0.43 Score=44.54 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=30.3
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNPSPG-SSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p~p~-~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+++..|. -|.-.-...|++.|.++| |+|++++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G--~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRG--HEVHFITSSR 39 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcC--CceEEEecCC
Confidence 4667666654 367788999999999999 9999998753
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=96.72 E-value=0.49 Score=43.83 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred cEEEEEcCC-C-CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc-
Q 039208 8 IRLFFNPSP-G-SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH- 84 (331)
Q Consensus 8 ~~i~~~p~p-~-~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~- 84 (331)
|||+++... + -|+-.-...++++|.++| |+|++++.... .+.+..+..++|+|......
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G--~~v~v~~~~~~----------------~~~~~~~~~~~diih~~~~~~ 62 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG--VDSTMLVQEKK----------------ALISKIEIINADIVHLHWIHG 62 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC--CceeEEEeecc----------------hhhhChhcccCCEEEEEcccc
Confidence 577777643 3 588999999999999999 99999986421 11122234589998764422
Q ss_pred -hhHHHHHHHc--CCCeEEE
Q 039208 85 -KVALQVSCSL--NIPTYLF 101 (331)
Q Consensus 85 -~~~~~vA~~~--giP~v~~ 101 (331)
.+....+.++ ++|.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~v~~ 82 (365)
T cd03825 63 GFLSIEDLSKLLDRKPVVWT 82 (365)
T ss_pred CccCHHHHHHHHcCCCEEEE
Confidence 1333444455 9998875
No 48
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.23 E-value=0.9 Score=41.21 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------hH----------HHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------QL----------ALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------p~----------~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
.|+..-+..+++.|.+.| |+|++++........ .. ...........+....+..++|+|+.
T Consensus 14 ~G~~~~~~~l~~~L~~~g--~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~ 91 (374)
T cd03801 14 GGAERHVLELARALAARG--HEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRRERFDVVHA 91 (374)
T ss_pred CcHhHHHHHHHHHHHhcC--ceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhhcCCcEEEE
Confidence 688999999999999999 999999876433211 00 00011111122223334568999998
Q ss_pred cCcchhHH--HHHHHcCCCeEEEecc
Q 039208 81 DFFHKVAL--QVSCSLNIPTYLFYAS 104 (331)
Q Consensus 81 D~~~~~~~--~vA~~~giP~v~~~~~ 104 (331)
.....+.. ..+...++|.+...-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 92 HDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred echhHHHHHHHHHHhcCCcEEEEecc
Confidence 87665443 4677789998876543
No 49
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=95.95 E-value=0.0048 Score=51.64 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=40.0
Q ss_pred CCcccccccC-HHHh-------hcCcccc----chhcCCcEeeccccc----chhhhHHHHHhhhccceeehh
Q 039208 238 WGLPVKSWAP-QVDV-------LSHDSVV----AVRTGVPMVAWPSNG----DQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 238 ~~~vv~~W~P-Q~~v-------L~H~~v~----al~~GVP~l~~P~~~----DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.++.+.+|.+ -.++ ..|++.+ ++++|+|+|.+|.-. +|..||..+++. |.|..+..
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~ 126 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE 126 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc
Confidence 3555668888 4444 4555554 999999999999988 999999999995 99998864
No 50
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=95.94 E-value=0.029 Score=53.82 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC--Ccc-----h--------HHH------hhhHHHHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT--LRG-----Q--------LAL------LNSPNLHKTL 66 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~--~~~-----p--------~~~------~~~~~l~~~l 66 (331)
++|++..-...||++|- .|+++|.++| ++|+++...... ... + +.+ .....+.+ +
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~--~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~-~ 81 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHY--PNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKE-V 81 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcC--CCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHH-H
Confidence 57888888888999999 9999999999 899888765311 100 1 111 01111111 2
Q ss_pred HHhhcCCCccEEEE-cCcch--hHHHHHHHcCCCeEEE
Q 039208 67 IIQSKTSNLKTLII-DFFHK--VALQVSCSLNIPTYLF 101 (331)
Q Consensus 67 ~~l~~~~~~d~vI~-D~~~~--~~~~vA~~~giP~v~~ 101 (331)
.++++..+||+||. |.-.+ ..+..|+.+|||.+.+
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 22335679999986 53221 1233667789999876
No 51
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.57 E-value=0.07 Score=50.58 Aligned_cols=92 Identities=15% Similarity=0.037 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC--CCCcc-----h--------HHHhhh---HHHH--HHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTF--PTLRG-----Q--------LALLNS---PNLH--KTLI 67 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~--~~~~~-----p--------~~~~~~---~~l~--~~l~ 67 (331)
++|+++.-..-||+.|-. ++++|.+++ +++.++.... ..... + +.+... ..+. ..+.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARA--PNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLK 78 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcC--CCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 589999888899999998 999999988 5555554221 11110 1 111000 0011 1122
Q ss_pred HhhcCCCccEEEE-cCcchhH--HHHHHHcCCCeEEEe
Q 039208 68 IQSKTSNLKTLII-DFFHKVA--LQVSCSLNIPTYLFY 102 (331)
Q Consensus 68 ~l~~~~~~d~vI~-D~~~~~~--~~vA~~~giP~v~~~ 102 (331)
++++..+||+|+. +.-..|. +..|++.|||.+.+.
T Consensus 79 ~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 79 RRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 3345668999875 3212233 345677899988764
No 52
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.01 E-value=0.12 Score=41.70 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCCcc------------hHHH-----hhhHHHHHHHHHhh--cCCCccEEEEcCc
Q 039208 23 SMDELGKLILTHYPYFSVTIIISTFPTLRG------------QLAL-----LNSPNLHKTLIIQS--KTSNLKTLIIDFF 83 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~------------p~~~-----~~~~~l~~~l~~l~--~~~~~d~vI~D~~ 83 (331)
-+..|+++|+++| |+|++++........ |+.. .....+ ..+.+++ +..++|+|.....
T Consensus 6 ~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Dvv~~~~~ 82 (160)
T PF13579_consen 6 YVRELARALAARG--HEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFL-RRLRRLLAARRERPDVVHAHSP 82 (160)
T ss_dssp HHHHHHHHHHHTT---EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHH-HHHHHHCHHCT---SEEEEEHH
T ss_pred HHHHHHHHHHHCC--CEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHH-HHHHHHHhhhccCCeEEEeccc
Confidence 4678999999999 999999875433211 1000 011111 2223333 5678999987664
Q ss_pred ch-hHHHHHH-HcCCCeEEEec
Q 039208 84 HK-VALQVSC-SLNIPTYLFYA 103 (331)
Q Consensus 84 ~~-~~~~vA~-~~giP~v~~~~ 103 (331)
.. +...+++ ..++|.+...-
T Consensus 83 ~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 83 TAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHHHHHHHT--EEEE-S
T ss_pred chhHHHHHHHHccCCcEEEEEC
Confidence 32 4445556 67999987653
No 53
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=93.83 E-value=0.53 Score=44.23 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h----------HHHhhhHHHHHH--HHHhhcCCCccE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q----------LALLNSPNLHKT--LIIQSKTSNLKT 77 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p----------~~~~~~~~l~~~--l~~l~~~~~~d~ 77 (331)
.-|++.|.++.++|.++| |+|.+.+-+ ..... + ........+... +-++.+..+||+
T Consensus 10 p~hvhfFk~~I~eL~~~G--heV~it~R~-~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv 86 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRG--HEVLITARD-KDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDV 86 (335)
T ss_pred chHHHHHHHHHHHHHhCC--CEEEEEEec-cchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 349999999999999999 999876543 32211 1 111111111111 112234568999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEecccH
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~~~~~ 106 (331)
+|+- ....+..+|.-+|+|++.|.-+..
T Consensus 87 ~is~-~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 87 AISF-GSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred EEec-CcHHHHHHHHHhCCCeEEEecCch
Confidence 9964 335677899999999999986543
No 54
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.30 E-value=6.5 Score=36.08 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------------h-HHHh-hhHHHHHHHHHh-hcCCCccEEEEc
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG------------Q-LALL-NSPNLHKTLIIQ-SKTSNLKTLIID 81 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~------------p-~~~~-~~~~l~~~l~~l-~~~~~~d~vI~D 81 (331)
.-|.-.-...+++.|.++| |+|++++........ + .... ...........+ ....++|+|++.
T Consensus 13 ~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~ 90 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARG--IEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLH 90 (357)
T ss_pred CCcHHHHHHHHHHHHHhCC--CceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEe
Confidence 4478888899999999999 999999876432211 0 0000 000001111111 235689999876
Q ss_pred CcchhHH--HHHHHcCCCeEEEecc
Q 039208 82 FFHKVAL--QVSCSLNIPTYLFYAS 104 (331)
Q Consensus 82 ~~~~~~~--~vA~~~giP~v~~~~~ 104 (331)
....... ......++|.+..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~~~h~ 115 (357)
T cd03795 91 FPNPLADLALLLLPRKKPVVVHWHS 115 (357)
T ss_pred cCcchHHHHHHHhccCceEEEEEcC
Confidence 5443222 2222358898876643
No 55
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.21 E-value=0.97 Score=41.37 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=55.4
Q ss_pred cEEEEEcCC-------CC-CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------h--H------HHhhhHHHHHH
Q 039208 8 IRLFFNPSP-------GS-SHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG------Q--L------ALLNSPNLHKT 65 (331)
Q Consensus 8 ~~i~~~p~p-------~~-gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~------p--~------~~~~~~~l~~~ 65 (331)
|||++++.. .. |--.-...|++.|.++| |+|+++++....... + . ...........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG--HEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALAL 78 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC--ceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHH
Confidence 577776532 22 45577899999999999 999999876442211 0 0 00011111222
Q ss_pred HHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 66 LIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+.++.+..++|+|.+-....... .+...++|.+...
T Consensus 79 ~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~~ 114 (335)
T cd03802 79 AERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTTL 114 (335)
T ss_pred HHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEEe
Confidence 33344556899887765544333 6777899987654
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=92.78 E-value=1.2 Score=42.39 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcc-------------------hHHHh---hh---HHHHHHHHHh-hcCCCccE
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRG-------------------QLALL---NS---PNLHKTLIIQ-SKTSNLKT 77 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------------------p~~~~---~~---~~l~~~l~~l-~~~~~~d~ 77 (331)
+.+||++|+++| |+|++++........ ++... +. ..+...+..+ .++.+||+
T Consensus 13 ~~~la~~L~~~G--~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdv 90 (396)
T cd03818 13 FRHLAPALAAQG--HEVVFLTEPNAAPPPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDV 90 (396)
T ss_pred HHHHHHHHHHCC--CEEEEEecCCCCCCCCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 788999999999 999999876542210 01110 11 1111122222 23568999
Q ss_pred EEEcCcchhHHHHHHHc-CCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSL-NIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~-giP~v~~~ 102 (331)
|++...+.++..+.+.+ ++|.+.++
T Consensus 91 i~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 91 IVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred EEECCccchhhhHHHhCCCCCEEEEE
Confidence 99998777777777775 59988764
No 57
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=92.50 E-value=0.68 Score=45.33 Aligned_cols=102 Identities=27% Similarity=0.386 Sum_probs=48.0
Q ss_pred CCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhh-hcCCCcc
Q 039208 175 PSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVER-TRDWGLP 241 (331)
Q Consensus 175 ~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~-~~~~~~v 241 (331)
|+..|+|.|| .-++-|++.+...||..+.+... +.. +-.-+.+. +...-++
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~------------~~~----l~~~~~~~Gv~~~Ri~ 345 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG------------EAR----LRRRFAAHGVDPDRII 345 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH------------HHH----HHHHHHHTTS-GGGEE
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH------------HHH----HHHHHHHcCCChhhEE
Confidence 4568999999 35556667788899998765311 000 10001110 1112234
Q ss_pred cccccCHHHhh---cCcccc--------------chhcCCcEeecccc-cchhhhHHHHHhhhccceeeh
Q 039208 242 VKSWAPQVDVL---SHDSVV--------------AVRTGVPMVAWPSN-GDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 242 v~~W~PQ~~vL---~H~~v~--------------al~~GVP~l~~P~~-~DQ~~na~~v~~~lGvG~~l~ 293 (331)
..++.|+.+-| .+.++. ||+.|||+|++|-- .=...-+..+.. +|+.--+.
T Consensus 346 f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA 414 (468)
T PF13844_consen 346 FSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA 414 (468)
T ss_dssp EEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-
T ss_pred EcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC
Confidence 45777766544 345554 99999999999932 122333344544 57766554
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=92.16 E-value=1.9 Score=41.56 Aligned_cols=38 Identities=11% Similarity=-0.055 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+.|+++++..-.|+-.=+..+|+.|+++| |+|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G--~~V~ii~~~ 40 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHG--WKVDLVGYL 40 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcC--ceEEEEEec
Confidence 45778887777777666788999999999 999999864
No 59
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.27 E-value=1.6 Score=35.60 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h--------HHHhhhHHHHHHHHHhhcCCCccEEE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q--------LALLNSPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p--------~~~~~~~~l~~~l~~l~~~~~~d~vI 79 (331)
-|=-.-+..|+++|+++| |+|+++++....... + ........+...+ +..++|+|-
T Consensus 12 GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~DiVh 85 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRG--HEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLI----KKEKPDIVH 85 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHH----HHHT-SEEE
T ss_pred ChHHHHHHHHHHHHHHCC--CEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHH----HHcCCCeEE
Confidence 356678899999999999 999999876433211 0 0001122223333 334899884
Q ss_pred EcC-cchhHHHHHHHcCCCeEEEec
Q 039208 80 IDF-FHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 80 ~D~-~~~~~~~vA~~~giP~v~~~~ 103 (331)
... ...+....+.. ++|.+...-
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~v~~~H 109 (177)
T PF13439_consen 86 IHGPPAFWIALLACR-KVPIVYTIH 109 (177)
T ss_dssp CCTTHCCCHHHHHHH-CSCEEEEE-
T ss_pred ecccchhHHHHHhcc-CCCEEEEeC
Confidence 333 23344444444 999887653
No 60
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=91.25 E-value=1.2 Score=41.63 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=42.0
Q ss_pred chhcCCcEeecccc---cchhhhHHHHHhhhccceeehhhHHHHhHHHHHHHHHHHHh
Q 039208 259 AVRTGVPMVAWPSN---GDQMVNMAFLVEKIRDPLTVAERRVIEGIRAPKEQAVGALS 313 (331)
Q Consensus 259 al~~GVP~l~~P~~---~DQ~~na~~v~~~lGvG~~l~~~~lm~~a~~l~~~~~~a~~ 313 (331)
=|++|+|-|.+|.. -+|-.-|.|+++ ||.--.+.++.+ .++.+++..+.+..
T Consensus 310 ILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~l--t~~~La~al~~~l~ 364 (400)
T COG4671 310 ILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPENL--TPQNLADALKAALA 364 (400)
T ss_pred HHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCcccC--ChHHHHHHHHhccc
Confidence 78999999999985 489999999999 799877766555 57777777776665
No 61
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.45 E-value=2.4 Score=36.59 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h-----HH-----------H-hhhH--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q-----LA-----------L-LNSP-- 60 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p-----~~-----------~-~~~~-- 60 (331)
||||+..==+. +-.-+..|.++|.+.| |+|+++.+....+-. | .. . ...|
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaD 77 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALG--HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPAD 77 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTS--SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcC--CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHH
Confidence 56666665444 4455788999998899 999999987655421 1 00 0 0111
Q ss_pred HHHHHHHHhhcCCCccEEEEcC----------cch---hHHHHHHHcCCCeEEEecccH
Q 039208 61 NLHKTLIIQSKTSNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 61 ~l~~~l~~l~~~~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~~~~ 106 (331)
-..-.+..++...+||+||+-. ++. .++.-|...|||.+.++....
T Consensus 78 cv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 78 CVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp HHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred HHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 1111234444444699999764 222 234455567999999986543
No 62
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=90.12 E-value=2.6 Score=33.38 Aligned_cols=89 Identities=11% Similarity=-0.039 Sum_probs=50.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------h-HHHhhhHH--HHHHHHHhhcCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------Q-LALLNSPN--LHKTLIIQSKTSN 74 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------p-~~~~~~~~--l~~~l~~l~~~~~ 74 (331)
+|+++..-...| ...+++.|.++| ++|++++........ + -.+.-... +. .+.++++..+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g--~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~-~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRG--YDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYF-RLRKIIKKEK 74 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCC--CEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHH-HHHHHhccCC
Confidence 356665544344 568899999999 999999985442211 1 00000111 11 2233445668
Q ss_pred ccEEEEcCcch-h--HHHHHHHcC-CCeEEEec
Q 039208 75 LKTLIIDFFHK-V--ALQVSCSLN-IPTYLFYA 103 (331)
Q Consensus 75 ~d~vI~D~~~~-~--~~~vA~~~g-iP~v~~~~ 103 (331)
||+|.+-.... + +..+++..| +|.+....
T Consensus 75 ~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 75 PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred CCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 99997666543 2 223445567 88876443
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.26 E-value=1.7 Score=43.70 Aligned_cols=31 Identities=39% Similarity=0.703 Sum_probs=24.4
Q ss_pred CCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCC
Q 039208 175 PSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPP 205 (331)
Q Consensus 175 ~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~ 205 (331)
|+.-|||.+| .-++-|++.+...+|.++.+.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa 798 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 798 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc
Confidence 4567999999 345566777889999999875
No 64
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.46 E-value=3.5 Score=34.84 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHH---HHHHH
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVAL---QVSCS 93 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~---~vA~~ 93 (331)
.-|+-.....|++.|.++| |+|+++.. +. ..+...+ +..++|+|+......... ..+..
T Consensus 12 ~~G~~~~~~~l~~~L~~~g--~~v~v~~~--------~~----~~~~~~~----~~~~~D~i~~~~~~~~~~~~~~~~~~ 73 (229)
T cd01635 12 GGGVELVLLDLAKALARRG--HEVEVVAL--------LL----LLLLRIL----RGFKPDVVHAHGYYPAPLALLLAARL 73 (229)
T ss_pred CCCchhHHHHHHHHHHHcC--CeEEEEEe--------ch----HHHHHHH----hhcCCCEEEEcCCCcHHHHHHHHHhh
Confidence 5699999999999999999 99999871 11 1122222 235899998776655333 35666
Q ss_pred cCCCeEEEe
Q 039208 94 LNIPTYLFY 102 (331)
Q Consensus 94 ~giP~v~~~ 102 (331)
.++|.+...
T Consensus 74 ~~~~~i~~~ 82 (229)
T cd01635 74 LGIPLVLTV 82 (229)
T ss_pred CCCCEEEEE
Confidence 789977654
No 65
>PRK10307 putative glycosyl transferase; Provisional
Probab=87.73 E-value=4.7 Score=38.56 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=51.2
Q ss_pred CcccccccCHHH---hhcCcccc-------------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh--
Q 039208 239 GLPVKSWAPQVD---VLSHDSVV-------------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE-- 294 (331)
Q Consensus 239 ~~vv~~W~PQ~~---vL~H~~v~-------------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~-- 294 (331)
++...+|.|+.+ +++..++. ++++|+|+|+....+.. ....+ + +.|+.++.
T Consensus 285 ~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~~d 359 (412)
T PRK10307 285 NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEPES 359 (412)
T ss_pred ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCCCC
Confidence 466668888754 45555542 79999999998754321 11222 2 45665543
Q ss_pred --------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 295 --------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 295 --------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+++++ ...++++.+++.+++-=|..+..+++++.++
T Consensus 360 ~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 360 VEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIR 406 (412)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 33333 4456666666666555566666666665543
No 66
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=87.63 E-value=4.8 Score=36.23 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=54.9
Q ss_pred EEEEcCC--CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hH------------HHhhhHHHHHHHHHhhcC
Q 039208 10 LFFNPSP--GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QL------------ALLNSPNLHKTLIIQSKT 72 (331)
Q Consensus 10 i~~~p~p--~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~------------~~~~~~~l~~~l~~l~~~ 72 (331)
|+++... .-|+-.-+..+++.|.+.| |+|++++........ .. ...........+.++++.
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRG--YDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRK 79 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcC--ceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHh
Confidence 4444433 5688899999999999999 999999875432211 00 000011111123333345
Q ss_pred CCccEEEEcCc-ch-hHHHHHHHcCCCeEEEecc
Q 039208 73 SNLKTLIIDFF-HK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 73 ~~~d~vI~D~~-~~-~~~~vA~~~giP~v~~~~~ 104 (331)
.++|+|++... .. ....++...++|.+...-.
T Consensus 80 ~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 113 (353)
T cd03811 80 EKPDVVISHLTTTPNVLALLAARLGTKLIVWEHN 113 (353)
T ss_pred cCCCEEEEcCccchhHHHHHHhhcCCceEEEEcC
Confidence 58999998876 33 3334444457898876543
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=87.18 E-value=5.1 Score=38.20 Aligned_cols=81 Identities=9% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--------c-----hHH---H-hh---hHHHHHHHHHhhcCCCccEE
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--------G-----QLA---L-LN---SPNLHKTLIIQSKTSNLKTL 78 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--------~-----p~~---~-~~---~~~l~~~l~~l~~~~~~d~v 78 (331)
|--.-...|++.|+++| |+|+++++...... . |+. + .. .......+.+.++..+||+|
T Consensus 15 G~e~~~~~la~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiI 92 (398)
T cd03796 15 GVETHIYQLSQCLIKRG--HKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIV 92 (398)
T ss_pred cHHHHHHHHHHHHHHcC--CeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEE
Confidence 45677899999999999 99999987432110 0 210 0 00 00011223333334589999
Q ss_pred EEcCcc-hh---HHHHHHHcCCCeEEE
Q 039208 79 IIDFFH-KV---ALQVSCSLNIPTYLF 101 (331)
Q Consensus 79 I~D~~~-~~---~~~vA~~~giP~v~~ 101 (331)
-.-... .+ +..+++..|+|.+..
T Consensus 93 h~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 93 HGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred EECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 765432 22 445677789998764
No 68
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=87.10 E-value=1.4 Score=42.33 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=46.1
Q ss_pred HHhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhh---hccceeehh----------hHHHH---hHH
Q 039208 249 VDVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEK---IRDPLTVAE----------RRVIE---GIR 302 (331)
Q Consensus 249 ~~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~---lGvG~~l~~----------~~lm~---~a~ 302 (331)
.++++.+++. +++.|+|+|.+|.-.-|. |+...++. .|.++.+.. .++++ +-+
T Consensus 291 ~~~l~~ADlvI~rSGt~T~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~ 369 (396)
T TIGR03492 291 AEILHWADLGIAMAGTATEQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLE 369 (396)
T ss_pred HHHHHhCCEEEECcCHHHHHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHH
Confidence 4677777776 888999999999766676 98776652 155555532 23333 222
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Q 039208 303 APKEQAVGALSEGGRSLAVVAELA 326 (331)
Q Consensus 303 ~l~~~~~~a~~~ggss~~~l~~~v 326 (331)
++++..+..+.+++++.+-.+.+.
T Consensus 370 ~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 370 RCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 333334444455666665554443
No 69
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=87.05 E-value=5.4 Score=36.06 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+|+++.....|+...+..+++.|.++| |+|++++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAG--YEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcC--CeeEEEecCCCc
Confidence 366666667788999999999999999 999999876443
No 70
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=86.96 E-value=5.9 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.|+-.-...+++.|+++| |+|++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g--~~v~~~~~~ 40 (394)
T cd03794 14 GGGAFRTTELAEELVKRG--HEVTVITGS 40 (394)
T ss_pred CCcceeHHHHHHHHHhCC--ceEEEEecC
Confidence 489999999999999999 999999865
No 71
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.90 E-value=8.4 Score=35.65 Aligned_cols=91 Identities=13% Similarity=-0.010 Sum_probs=61.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h-----------HHHhhhHHHHH--HHHHhhcC
Q 039208 14 PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q-----------LALLNSPNLHK--TLIIQSKT 72 (331)
Q Consensus 14 p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p-----------~~~~~~~~l~~--~l~~l~~~ 72 (331)
-..-.-|+..|-.+-+.|..+| |+|.+ |...+.... | +-......... .|.++..+
T Consensus 6 DI~n~~hvhfFk~lI~elekkG--~ev~i-T~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~ 82 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKKG--HEVLI-TCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAE 82 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhCC--eEEEE-EEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 3344569999999999999999 99975 444443321 1 11111122211 23444557
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA 108 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~ 108 (331)
.+||+.+. -..+.+..+|--+|+|.+.|.-+..+.
T Consensus 83 ~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 83 FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 79999999 667788999999999999998665443
No 72
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=86.18 E-value=1 Score=34.30 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=36.1
Q ss_pred cchhhhhhccCCCCeEEEeeH-----------------HHHHHHHhcCCcEEEEEeCC
Q 039208 164 DHTCFSWLDKQPSHCIVFLCF-----------------EMAMRLKRSGAAFLWVVLFP 204 (331)
Q Consensus 164 ~~~~~~wLd~~~~~~vVyvsf-----------------~l~~al~~~~~~flw~~~~~ 204 (331)
+..+.+||...+.++.|++|+ ++.+++++++..+|-++...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 456788999988999999998 78999999999999999765
No 73
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=85.39 E-value=12 Score=35.26 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=26.9
Q ss_pred cEEEEEc-CCCC-CCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNP-SPGS-SHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p-~p~~-gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||+++. ..+. |=-.-+..||++|+++| |+|+++++.
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G--~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG--HEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC--CeEEEEcCC
Confidence 4666664 3222 33456689999999999 999999864
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=84.62 E-value=5.7 Score=37.04 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=51.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCCcc-------------h--H----------HHhhhHHHH
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTLRG-------------Q--L----------ALLNSPNLH 63 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~-------------p--~----------~~~~~~~l~ 63 (331)
|+++. +++..+.=+.+|.++|.++ | +++.++.+....+.. + . .......+.
T Consensus 2 i~~~~-gtr~~~~~~~pl~~~l~~~~~--~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (363)
T cd03786 2 ILVVT-GTRPEYIKLAPLIRALKKDPG--FELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLI 78 (363)
T ss_pred EEEEE-ecCHHHHHHHHHHHHHhcCCC--CCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHH
Confidence 44443 6778888888899999987 7 999977664222110 0 0 000111111
Q ss_pred HHHHHhhcCCCccEEEEcC--cch-hHHHHHHHcCCCeEEEe
Q 039208 64 KTLIIQSKTSNLKTLIIDF--FHK-VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~--~~~-~~~~vA~~~giP~v~~~ 102 (331)
. +.+.++..+||+|++-. ... ++..+|+..|+|++.+.
T Consensus 79 ~-l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 79 G-LEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred H-HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 2 22223445899998753 222 35567777899988653
No 75
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=84.55 E-value=3.2 Score=40.05 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=46.9
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh--------hHHHH---hHHHHHHHHHHHHhc-CCChHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE--------RRVIE---GIRAPKEQAVGALSE-GGRSLAVVAELA 326 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~--------~~lm~---~a~~l~~~~~~a~~~-ggss~~~l~~~v 326 (331)
|+++|+|+|+-|..+++......+.+. |.++.... .++++ ..+++++.+++.+.+ .|..++.++.+.
T Consensus 340 Ama~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~ 418 (425)
T PRK05749 340 PAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLE 418 (425)
T ss_pred HHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 999999999999988888888877774 88777643 33343 566777777776654 355555554443
No 76
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=83.81 E-value=6.6 Score=36.15 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+.+..+|.+.-.|+.|-=.-.-.|.+.|.++| |+|.++..+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVD 88 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERG--HRVAVLAVD 88 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCC--cEEEEEEEC
Confidence 34445688999999999999999999999999 999999765
No 77
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=83.13 E-value=2.4 Score=40.82 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=56.4
Q ss_pred CCcccccccCHHHhh---cC--cccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh---
Q 039208 238 WGLPVKSWAPQVDVL---SH--DSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE--- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~vL---~H--~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~--- 294 (331)
..+...+|+++.++. .. .++. |+++|+|+|+.... .....+.+. +.|.-+..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCCCCC
Confidence 345566999976543 22 2232 99999999996543 456666663 47876642
Q ss_pred --------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHH
Q 039208 295 --------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELA 326 (331)
Q Consensus 295 --------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v 326 (331)
+++++ ..+++++.+++.+++.=+..++.++|+
T Consensus 364 ~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 33333 567778888888888888888887775
No 78
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=82.65 E-value=5.6 Score=37.42 Aligned_cols=93 Identities=8% Similarity=-0.003 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHh----------h---hHHHHHHHHHhh
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALL----------N---SPNLHKTLIIQS 70 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~----------~---~~~l~~~l~~l~ 70 (331)
+++|+++-.-+.|++.-..++.+.|.++-|+.+|++++........ |.++. . ...+..++.++
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~l- 83 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKVL- 83 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHHH-
Confidence 3579999999999999999999999999777999999876443211 31111 0 11122233333
Q ss_pred cCCCccEEEEcCcchhHHHHHHHcCCCeEE
Q 039208 71 KTSNLKTLIIDFFHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 71 ~~~~~d~vI~D~~~~~~~~vA~~~giP~v~ 100 (331)
+..++|++|.=........++.-.|.+...
T Consensus 84 r~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 84 RANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred hhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 456899988543333344556666877644
No 79
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.32 E-value=5.4 Score=37.42 Aligned_cols=92 Identities=7% Similarity=-0.026 Sum_probs=60.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHhh-----------hHHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALLN-----------SPNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~~-----------~~~l~~~l~~l~~~~ 73 (331)
|||+++-..+.|++.-..++.+.|.++-|+.+|++++.+...... |+++.. .....+++.++ +..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~l-r~~ 79 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSL-REK 79 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHH-Hhc
Confidence 479999999999999999999999998777999999875433211 322110 11122334333 456
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEE
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~ 100 (331)
++|++|.=....-...++.-.|+|.-.
T Consensus 80 ~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 80 RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 899887543333455566666777544
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=81.97 E-value=13 Score=36.55 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=31.1
Q ss_pred CcccEEEEEcCCC----CCCHHHHHHHHHHHHhcCCce-EEEEEeCCC
Q 039208 5 WIIIRLFFNPSPG----SSHLLSMDELGKLILTHYPYF-SVTIIISTF 47 (331)
Q Consensus 5 ~~~~~i~~~p~p~----~gH~~p~~~la~~L~~~G~~h-~Vt~~~~~~ 47 (331)
.++|||++++--. -|=..-.+.++..|+++| | +|+++.+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G--~heV~vvaP~~ 47 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDG--DREVTLVIPWL 47 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcC--CcEEEEEecCC
Confidence 3568999998543 365466677778999999 6 999998743
No 81
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.60 E-value=12 Score=28.93 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
.|+++...+..-|-.-+.-++..|.++| |+|.++-.. . .. .++.+.+ +..+||+|....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G--~~v~~~d~~--------~--~~---~~l~~~~-~~~~pd~V~iS~ 59 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAG--HEVDILDAN--------V--PP---EELVEAL-RAERPDVVGISV 59 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTT--BEEEEEESS--------B---H---HHHHHHH-HHTTCSEEEEEE
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCC--CeEEEECCC--------C--CH---HHHHHHH-hcCCCcEEEEEc
Confidence 3789999999999999999999999999 999987542 1 01 2222222 234889887765
No 82
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=81.60 E-value=9.7 Score=31.72 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHh-cCCceEEEEEeCCCCCCcc----------------h-----------------HHHhhhHHHHHH
Q 039208 20 HLLSMDELGKLILT-HYPYFSVTIIISTFPTLRG----------------Q-----------------LALLNSPNLHKT 65 (331)
Q Consensus 20 H~~p~~~la~~L~~-~G~~h~Vt~~~~~~~~~~~----------------p-----------------~~~~~~~~l~~~ 65 (331)
|...-..|+++|.+ +|+..+|.++-.-...... + ........+.+-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y~~~~~~~~ly~~~y~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAYLFMVRHAPLYGWLYRWTDKRRPRSKFLSALSRLFARR 80 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 77778899999988 5644676654322211110 0 001112222233
Q ss_pred HHHhhcCCCccEEEEcCcchhHH--H-HHHH--c-CCCeEEEecc
Q 039208 66 LIIQSKTSNLKTLIIDFFHKVAL--Q-VSCS--L-NIPTYLFYAS 104 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D~~~~~~~--~-vA~~--~-giP~v~~~~~ 104 (331)
+.+++++.+||+||+...+.... . +-++ + ++|.+.+.|-
T Consensus 81 l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 81 LIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 44445677999999998764333 1 2122 3 5787766654
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=81.32 E-value=9.7 Score=35.79 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=52.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h---H-HH----hhhHHHHHH---HH
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q---L-AL----LNSPNLHKT---LI 67 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p---~-~~----~~~~~l~~~---l~ 67 (331)
||+++. +++.|+.-+.++.++|.++.. .++.++.+....... | + +. .....+... +.
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~-~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPE-IDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLE 79 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCC-CCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHH
Confidence 666655 688999999999999998721 444444432111110 1 0 00 001111111 22
Q ss_pred HhhcCCCccEEEEc--Ccch-hHHHHHHHcCCCeEEE
Q 039208 68 IQSKTSNLKTLIID--FFHK-VALQVSCSLNIPTYLF 101 (331)
Q Consensus 68 ~l~~~~~~d~vI~D--~~~~-~~~~vA~~~giP~v~~ 101 (331)
++++..+||+|++- .... ++..+|..+|||.+.+
T Consensus 80 ~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 80 ELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 33345689999875 3433 5677888899998865
No 84
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=80.94 E-value=4.6 Score=36.12 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcc--h--HHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhH-------HHHHH
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRG--Q--LALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVA-------LQVSC 92 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p--~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~-------~~vA~ 92 (331)
-..|++.|...+ +.+++.+........ + ....+...=.+-+.++++..+.|+|| |...+++ ..+|+
T Consensus 14 ar~la~~L~~~~--~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llI-DATHPyAa~iS~Na~~aak 90 (257)
T COG2099 14 ARALAKKLAAAP--VDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLI-DATHPYAARISQNAARAAK 90 (257)
T ss_pred HHHHHHHhhccC--ccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEE-ECCChHHHHHHHHHHHHHH
Confidence 468999999998 888777665443321 1 01111111123333444455788665 6666654 46788
Q ss_pred HcCCCeEEEe
Q 039208 93 SLNIPTYLFY 102 (331)
Q Consensus 93 ~~giP~v~~~ 102 (331)
+.|||++.|-
T Consensus 91 e~gipy~r~e 100 (257)
T COG2099 91 ETGIPYLRLE 100 (257)
T ss_pred HhCCcEEEEE
Confidence 8999999874
No 85
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=80.91 E-value=21 Score=37.61 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=23.4
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|+++|+|+|+.-.. .....|.+. ..|.-+++
T Consensus 663 AMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 663 AMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred HHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC
Confidence 99999999997554 466667664 67888764
No 86
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=80.77 E-value=8.8 Score=35.11 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=51.4
Q ss_pred EEEEEc-CC--CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcch----------HHHhhhHHHHHHHHHhhcCCCc
Q 039208 9 RLFFNP-SP--GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQ----------LALLNSPNLHKTLIIQSKTSNL 75 (331)
Q Consensus 9 ~i~~~p-~p--~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p----------~~~~~~~~l~~~l~~l~~~~~~ 75 (331)
||+|+. ++ .-|--.-...|+++|+++| |+|++++......... .......... .+.+.++..++
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARG--PDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYR-RAARAIRLSGP 77 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcC--CeEEEEEeecccCcccCCCcccceeeeecCCchhHH-HHHHHHhhcCC
Confidence 355554 22 2467788999999999999 9999987653322110 0000011111 12222345589
Q ss_pred cEEEEcC----cchh----HHHHHHHcCCCeEEEecc
Q 039208 76 KTLIIDF----FHKV----ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 76 d~vI~D~----~~~~----~~~vA~~~giP~v~~~~~ 104 (331)
|+|+... +... ....++..++|.+...-.
T Consensus 78 dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 114 (366)
T cd03822 78 DVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHT 114 (366)
T ss_pred CEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEec
Confidence 9998754 1111 222334489999876544
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=80.28 E-value=12 Score=36.29 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=36.8
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.-.. .+...+.+. ..|+.++. +++++ ..+++.+.+++.+.+.=|-.+-.+++
T Consensus 360 Ama~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~ 434 (439)
T TIGR02472 360 AAACGLPIVATDDG----GPRDIIANC-RNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKY 434 (439)
T ss_pred HHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998653 455556553 56776643 23333 44556666665544444444444443
Q ss_pred H
Q 039208 326 A 326 (331)
Q Consensus 326 v 326 (331)
.
T Consensus 435 ~ 435 (439)
T TIGR02472 435 L 435 (439)
T ss_pred H
Confidence 3
No 88
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=80.07 E-value=16 Score=33.25 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
.-|+..-...|++.|.++| |+|++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~ 41 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLG--HEVTVATTDA 41 (375)
T ss_pred cCCeehHHHHHHHHHHhcC--CcEEEEecCC
Confidence 3589999999999999999 9999998754
No 89
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=79.80 E-value=17 Score=34.41 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
-|--.-...|+++|.++| |+|+++++.
T Consensus 20 GG~e~~v~~la~~L~~~G--~~V~v~~~~ 46 (405)
T TIGR03449 20 GGMNVYILETATELARRG--IEVDIFTRA 46 (405)
T ss_pred CCceehHHHHHHHHhhCC--CEEEEEecc
Confidence 466788899999999999 999999864
No 90
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=79.54 E-value=13 Score=34.06 Aligned_cols=83 Identities=5% Similarity=-0.090 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------hHH------HhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 16 PGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---------QLA------LLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 16 p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p~~------~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
..-|.-.-...++++|.++| |+|++++........ +++ ......+.. +.++++..++|+|.+
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dvv~~ 86 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSK--IQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKK-LYKLIKKNKYDIVHV 86 (358)
T ss_pred CCccHHHHHHHHHHhcCccc--eEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHH-HHHHHhcCCCCEEEE
Confidence 34578888999999999999 999999875433111 000 000111111 222334568999987
Q ss_pred cCcc-h-hHHHHHHHcCCCeEEE
Q 039208 81 DFFH-K-VALQVSCSLNIPTYLF 101 (331)
Q Consensus 81 D~~~-~-~~~~vA~~~giP~v~~ 101 (331)
.... . ....+++.+++|.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~ 109 (358)
T cd03812 87 HGSSASGFILLAAKKAGVKVRIA 109 (358)
T ss_pred eCcchhHHHHHHHhhCCCCeEEE
Confidence 6543 2 3344566678887654
No 91
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=79.12 E-value=64 Score=31.21 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=35.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehhhHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAERRVI 298 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~~~lm 298 (331)
++++|+|++.=|....|..-++++.+. |.|+.++.++++
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~~~~l 376 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVEDADLL 376 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEECCHHHH
Confidence 999999999999999999999999996 999999873333
No 92
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.98 E-value=13 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|+++.+.++-.|.....-++..|..+| ++|+++..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G--~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAG--FEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCC--CEEEECCC
Confidence 578999999999999999999999999 99987654
No 93
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=78.86 E-value=20 Score=32.38 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------------------hHHHhhhHHHHHHHHHhhc--
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------------------QLALLNSPNLHKTLIIQSK-- 71 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------------------p~~~~~~~~l~~~l~~l~~-- 71 (331)
..|+-.-+..+++.|.+.| |+|++++........ .........+...+..+++
T Consensus 13 ~~g~~~~~~~~~~~l~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (377)
T cd03798 13 NGGGGIFVKELARALAKRG--VEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLK 90 (377)
T ss_pred CchHHHHHHHHHHHHHHCC--CceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcc
Confidence 4688899999999999999 999999875432110 0000001111122233334
Q ss_pred CCCccEEEEcCcch---hHHHHHHHcCCCeEEEec
Q 039208 72 TSNLKTLIIDFFHK---VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 72 ~~~~d~vI~D~~~~---~~~~vA~~~giP~v~~~~ 103 (331)
..++|+|++..... ....+++..|+|.+...-
T Consensus 91 ~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h 125 (377)
T cd03798 91 RFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLH 125 (377)
T ss_pred cCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEee
Confidence 56899998885443 334566677899887543
No 94
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=78.57 E-value=20 Score=33.62 Aligned_cols=91 Identities=8% Similarity=-0.030 Sum_probs=51.7
Q ss_pred cEEEEEcC--CCC-CCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCcc-----hH------HHh----hhHHHHHHHH
Q 039208 8 IRLFFNPS--PGS-SHLLSMDELGKLILTH--YPYFSVTIIISTFPTLRG-----QL------ALL----NSPNLHKTLI 67 (331)
Q Consensus 8 ~~i~~~p~--p~~-gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~~-----p~------~~~----~~~~l~~~l~ 67 (331)
|||+++.. +.. |=-.-+..+++.|.++ | |+|++++........ .+ ... ....+. .+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 77 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKIN--CEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVY-NFS 77 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcc--eeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHH-HHH
Confidence 56776653 222 3447779999999999 8 999998875432110 00 000 011111 223
Q ss_pred HhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEE
Q 039208 68 IQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLF 101 (331)
Q Consensus 68 ~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~ 101 (331)
++++..++|+|++-.... ++..+++..|+|...+
T Consensus 78 ~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T PRK09922 78 KWLKETQPDIVICIDVISCLYANKARKKSGKQFKIF 113 (359)
T ss_pred HHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEE
Confidence 344567899998765322 3444555568886544
No 95
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=78.16 E-value=14 Score=33.95 Aligned_cols=83 Identities=5% Similarity=-0.138 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------hHHH----hhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----------QLAL----LNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----------p~~~----~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
-|--.-...|+++|+++| |+|++++........ +... .....+..+ ..+++..++|+|++..
T Consensus 10 gG~e~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~dii~~~~ 86 (355)
T cd03819 10 GGVERGTLELARALVERG--HRSLVASAGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARL-RRLIREEKVDIVHARS 86 (355)
T ss_pred CcHHHHHHHHHHHHHHcC--CEEEEEcCCCchHHHHHhcCCeEEEccccccchhhhHHHHHHH-HHHHHHcCCCEEEECC
Confidence 355677889999999999 999998764321110 1000 011111222 2223456899998875
Q ss_pred cc-hhHHH-HHHHcCCCeEEEec
Q 039208 83 FH-KVALQ-VSCSLNIPTYLFYA 103 (331)
Q Consensus 83 ~~-~~~~~-vA~~~giP~v~~~~ 103 (331)
.. .|... +++..++|.+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 87 RAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred CchhHHHHHHHHhcCCCEEEEeC
Confidence 33 34443 45567999887554
No 96
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=77.72 E-value=8.7 Score=34.67 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcc--h--HHHhhhHHH-HHHHHHhhcCCCccEEEEcCcchhH-------HHHH
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRG--Q--LALLNSPNL-HKTLIIQSKTSNLKTLIIDFFHKVA-------LQVS 91 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p--~~~~~~~~l-~~~l~~l~~~~~~d~vI~D~~~~~~-------~~vA 91 (331)
-..|++.|.++| |+|+..+........ . ........+ .+-+.++++..++|+|| |...+++ ..++
T Consensus 12 gr~la~~L~~~g--~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI-DAtHPfA~~is~~a~~a~ 88 (256)
T TIGR00715 12 SRAIAKGLIAQG--IEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILV-DATHPFAAQITTNATAVC 88 (256)
T ss_pred HHHHHHHHHhCC--CeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEE-EcCCHHHHHHHHHHHHHH
Confidence 678999999999 999887765433211 0 000000001 11243444556899766 5444443 4677
Q ss_pred HHcCCCeEEEe
Q 039208 92 CSLNIPTYLFY 102 (331)
Q Consensus 92 ~~~giP~v~~~ 102 (331)
+++|||++.|-
T Consensus 89 ~~~~ipylR~e 99 (256)
T TIGR00715 89 KELGIPYVRFE 99 (256)
T ss_pred HHhCCcEEEEE
Confidence 88999988873
No 97
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=77.54 E-value=13 Score=29.98 Aligned_cols=39 Identities=10% Similarity=0.023 Sum_probs=35.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++.++++...++-+|-.-..-++..|.++| .+|+++...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G--~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAG--FEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCC--CEEEECCCC
Confidence 467899999999999999999999999999 999998764
No 98
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=77.31 E-value=7.9 Score=36.10 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=25.5
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.|++|+|+|+++ +...+..|++. ++|+.++.
T Consensus 256 ymA~G~PVI~~~----~~~~~~~V~~~-~~G~~v~~ 286 (333)
T PRK09814 256 YLAAGLPVIVWS----KAAIADFIVEN-GLGFVVDS 286 (333)
T ss_pred HHHCCCCEEECC----CccHHHHHHhC-CceEEeCC
Confidence 599999999975 45677888885 99999864
No 99
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.55 E-value=24 Score=32.33 Aligned_cols=82 Identities=7% Similarity=-0.145 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--c----------hH-----HHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--G----------QL-----ALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--~----------p~-----~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
|=-.-...|+++|.++| |+|++++....... . |. .......+..++.......++|++.+.
T Consensus 16 G~~~~~~~la~~L~~~g--~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (363)
T cd04955 16 GFETFVEELAPRLVARG--HEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILHALFVKRDIDHVHAL 93 (363)
T ss_pred cHHHHHHHHHHHHHhcC--CCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHHHHHHHHHHhccCCeEEEEec
Confidence 44567789999999999 99999987543221 0 10 111111122222221123456666544
Q ss_pred Ccc-hhHHHHHHHcCCCeEEEe
Q 039208 82 FFH-KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 82 ~~~-~~~~~vA~~~giP~v~~~ 102 (331)
... .....+++..|+|.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~ 115 (363)
T cd04955 94 GPAIAPFLPLLRLKGKKVVVNM 115 (363)
T ss_pred CccHHHHHHHHHhcCCCEEEEc
Confidence 332 234456667799988754
No 100
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=76.03 E-value=20 Score=30.23 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=26.8
Q ss_pred CCCccEEEEcCcchhHHHHHHHc-CCCeEEEe
Q 039208 72 TSNLKTLIIDFFHKVALQVSCSL-NIPTYLFY 102 (331)
Q Consensus 72 ~~~~d~vI~D~~~~~~~~vA~~~-giP~v~~~ 102 (331)
+..||+||....+..++.+-+.+ ++|.+.++
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 56899999999888888888888 89988864
No 101
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.97 E-value=16 Score=36.58 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred chhcCCcEeecccccchhh--hHHHHHhhhccceeehh--hHHHH------hHHHHHHHHHHHHhcCCCh--HHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMV--NMAFLVEKIRDPLTVAE--RRVIE------GIRAPKEQAVGALSEGGRS--LAVVAELA 326 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~--na~~v~~~lGvG~~l~~--~~lm~------~a~~l~~~~~~a~~~ggss--~~~l~~~v 326 (331)
+|+.|||||+++ ++||. |+.-+...+|+---+.. .+..+ +-+.++++.+.+++.+-.+ -.+...|.
T Consensus 527 aLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~fa 604 (620)
T COG3914 527 ALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFA 604 (620)
T ss_pred HHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHH
Confidence 999999999985 77774 33334443455444422 22222 4444555566655544332 44444444
Q ss_pred HHH
Q 039208 327 ESF 329 (331)
Q Consensus 327 ~~~ 329 (331)
+++
T Consensus 605 r~l 607 (620)
T COG3914 605 RKL 607 (620)
T ss_pred HHH
Confidence 443
No 102
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=75.88 E-value=8.3 Score=37.11 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCcccccccCHHHh---------hcCccc----------c-----chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 238 WGLPVKSWAPQVDV---------LSHDSV----------V-----AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 238 ~~~vv~~W~PQ~~v---------L~H~~v----------~-----al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++...+|.||.++ +-+|+. + |+++|+|+|+.... .....+.+. ..|+-++
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~ 353 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVP 353 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeC
Confidence 44666689998653 233432 1 99999999997553 344556553 5677665
Q ss_pred h----------hHHHH----hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 294 E----------RRVIE----GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 294 ~----------~~lm~----~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
. +++++ ..+++++.+++.+++-=+..+..+++.+.+.
T Consensus 354 ~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 354 ENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3 33333 3556677777766666667777777766554
No 103
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=74.67 E-value=26 Score=32.00 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
-|+......|++.|.++| |+|++++..
T Consensus 12 gG~~~~~~~l~~~L~~~g--~~v~v~~~~ 38 (360)
T cd04951 12 GGAEKQVVDLADQFVAKG--HQVAIISLT 38 (360)
T ss_pred CCHHHHHHHHHHhcccCC--ceEEEEEEe
Confidence 578999999999999999 999998753
No 104
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=74.62 E-value=9.3 Score=36.79 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=52.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh---------hhH-HHHHHHHHhhcCCCccEEE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL---------NSP-NLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~---------~~~-~l~~~l~~l~~~~~~d~vI 79 (331)
++-+=..+.|.++-..+|+++|.+++|.++|.+.+...... +..+. ..+ .+...+.++++..+||+++
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~--~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~ 129 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGS--ERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVI 129 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHH--HHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEE
Confidence 44455568899999999999999988545554333211110 11100 000 1112334444556999988
Q ss_pred EcCcchh--HHHHHHHcCCCeEEEe
Q 039208 80 IDFFHKV--ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 80 ~D~~~~~--~~~vA~~~giP~v~~~ 102 (331)
......| ....+++.|+|.+.+.
T Consensus 130 ~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 130 IMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEecchhHHHHHHHHHCCCCEEEEe
Confidence 5433333 4456677899998764
No 105
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.48 E-value=9.1 Score=35.43 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
|||+++-..+.|++.-..++.+.|.++-|+.+||+++....
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~ 41 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGF 41 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHH
Confidence 48999999999999999999999999866699999997643
No 106
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=74.41 E-value=18 Score=32.45 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH---------HHh-hhH--HHHHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL---------ALL-NSP--NLHKTLI 67 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~---------~~~-~~~--~l~~~l~ 67 (331)
|||++..==| =|--=+..|+++|. .+ ++|+++.+....+-. |+ +.. ..| -..-.+.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~--~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaDCV~lal~ 76 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EG--ADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPADCVILGLN 76 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hC--CCEEEEccCCCCcccccccccccCceeeEeccceEEecCChHHHHHHHHH
Confidence 3455544222 13344667888888 88 899999987554421 31 000 111 1111234
Q ss_pred HhhcCCCccEEEEcCcc----------h---hHHHHHHHcCCCeEEEecc
Q 039208 68 IQSKTSNLKTLIIDFFH----------K---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 68 ~l~~~~~~d~vI~D~~~----------~---~~~~vA~~~giP~v~~~~~ 104 (331)
.+.++..||+||+-.-. . .++.-|.-+|||.+.++..
T Consensus 77 ~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 77 ELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 44445569999976422 2 3455566689999998765
No 107
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=74.28 E-value=20 Score=33.10 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=54.4
Q ss_pred eEEEeeH--------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHH
Q 039208 178 CIVFLCF--------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQV 249 (331)
Q Consensus 178 ~vVyvsf--------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~ 249 (331)
-++|+.- .++++++..+.++++.-..+. ... +.+ ....++...+|+|+.
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~~~~~l~ivG~g~~--------------~~~--------l~~-~~~~~V~~~g~~~~~ 253 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNKLGKRLVVIGDGPE--------------LDR--------LRA-KAGPNVTFLGRVSDE 253 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHHCCCcEEEEECChh--------------HHH--------HHh-hcCCCEEEecCCCHH
Confidence 4666654 688888888877665443321 001 111 123566777999985
Q ss_pred H---hhcCcccc--------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 250 D---VLSHDSVV--------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 250 ~---vL~H~~v~--------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
+ +++..++. |+++|+|+|+....+ ....+.+. +.|.-++.
T Consensus 254 ~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~ 310 (351)
T cd03804 254 ELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE 310 (351)
T ss_pred HHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC
Confidence 4 45555543 999999999986543 44455563 67777653
No 108
>PLN00142 sucrose synthase
Probab=74.19 E-value=15 Score=38.70 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.4
Q ss_pred CCccEEEEcCcch--hHHHHHHHcCCCeEEEec
Q 039208 73 SNLKTLIIDFFHK--VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 73 ~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~ 103 (331)
.+||+|.+.+... .+..+|+++|||.+...-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 4699999987665 566788999999987653
No 109
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=73.27 E-value=28 Score=31.06 Aligned_cols=82 Identities=15% Similarity=-0.030 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC-Ccc---h-----HHH--------hhhHHHHHHHHHhhcCCCccEEEE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPT-LRG---Q-----LAL--------LNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~-~~~---p-----~~~--------~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
-|...-+..+++.|.++| |+|++++..... ... + .+. ...... ..+.++++..++|+|+.
T Consensus 13 gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~i~~ 89 (348)
T cd03820 13 GGAERVLSNLANALAEKG--HEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKL-RRLRKLLKNNKPDVVIS 89 (348)
T ss_pred CChHHHHHHHHHHHHhCC--CeEEEEecCCCCCCccccCCccceeecccccccchhccccch-HHHHHhhcccCCCEEEE
Confidence 466778889999999999 999999876443 110 0 000 011111 12233344568999998
Q ss_pred cCcchhHHHHHHHcCC-CeEEEe
Q 039208 81 DFFHKVALQVSCSLNI-PTYLFY 102 (331)
Q Consensus 81 D~~~~~~~~vA~~~gi-P~v~~~ 102 (331)
..........+...+. |.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~ 112 (348)
T cd03820 90 FLTSLLTFLASLGLKIVKLIVSE 112 (348)
T ss_pred cCchHHHHHHHHhhccccEEEec
Confidence 8755323333334454 766543
No 110
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=72.30 E-value=11 Score=34.89 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHhh--------h---HHHHHHHHHhhcCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALLN--------S---PNLHKTLIIQSKTSN 74 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~~--------~---~~l~~~l~~l~~~~~ 74 (331)
||+++-..+.|++.-..++.+.|.++-|+.+|++++........ |+++.. . ....+++.++ +..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l-r~~~ 79 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGHGALELTERRRLGRSL-REER 79 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcccchhhhHHHHHHHHH-hhcC
Confidence 58889989999999999999999998666999999975432211 322111 0 1112233333 4568
Q ss_pred ccEEEEcCcchhHHHHHHHcCCCeE
Q 039208 75 LKTLIIDFFHKVALQVSCSLNIPTY 99 (331)
Q Consensus 75 ~d~vI~D~~~~~~~~vA~~~giP~v 99 (331)
+|++|.-........++.-.|+|.-
T Consensus 80 yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 80 YDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred CCEEEECCCCHHHHHHHHHcCCCce
Confidence 9998876554455556666677754
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=71.41 E-value=15 Score=31.59 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+.++++.+.++-.|-....-++..|..+| ++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANG--FEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCC--CEEEECCCC
Confidence 56899999999999999999999999999 999887653
No 112
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=71.02 E-value=12 Score=33.48 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHhhhHHH--HHHHHHhhcCCCccEEEEcCcc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLALLNSPNL--HKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~~~~~l--~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
++|+++.--+-| ..|++.|.++| ..|++.+........ +........+ .+-+.++++..++++|| |...
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g--~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VI-DATH 74 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAG--VDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVI-DATH 74 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCC--CeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEE-ECCC
Confidence 456665533333 47899999999 887766554433211 1111111111 22333344456888766 6655
Q ss_pred hhH-------HHHHHHcCCCeEEEe
Q 039208 85 KVA-------LQVSCSLNIPTYLFY 102 (331)
Q Consensus 85 ~~~-------~~vA~~~giP~v~~~ 102 (331)
+++ ..+++++|||++.|-
T Consensus 75 PfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 75 PYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 544 467788999999875
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=70.92 E-value=13 Score=35.30 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceee-hh----------hHHHH--hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTV-AE----------RRVIE--GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l-~~----------~~lm~--~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.... .+...+.+. ..|..+ ++ .++++ ..+++++.+++...+-=|..+..+++
T Consensus 297 Ama~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~ 371 (380)
T PRK15484 297 AMAAGKPVLASTKG----GITEFVLEG-ITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRF 371 (380)
T ss_pred HHHcCCCEEEeCCC----CcHhhcccC-CceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998663 355556663 567644 21 22332 22455555555444445555555555
Q ss_pred HHHHh
Q 039208 326 AESFR 330 (331)
Q Consensus 326 v~~~~ 330 (331)
.+.+.
T Consensus 372 ~~~l~ 376 (380)
T PRK15484 372 EEQIH 376 (380)
T ss_pred HHHHH
Confidence 55443
No 114
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=70.48 E-value=9.2 Score=35.42 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=23.2
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+-+.. .+...+.+. +.|.-++
T Consensus 290 A~a~G~PvI~s~~~----~~~e~i~~~-~~g~~~~ 319 (367)
T cd05844 290 AQASGVPVVATRHG----GIPEAVEDG-ETGLLVP 319 (367)
T ss_pred HHHcCCCEEEeCCC----CchhheecC-CeeEEEC
Confidence 99999999987764 466667664 7788775
No 115
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=70.42 E-value=41 Score=32.69 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-ch----HHHhh------hHHHHHHHHHhhcCCCccE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-GQ----LALLN------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-~p----~~~~~------~~~l~~~l~~l~~~~~~d~ 77 (331)
|+.++..|.. ...+++.|.+-| .+|+.+.+...... .+ .+... ...+.+.++.+ +..+||+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elG--mevv~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~dl~~~~~~l-~~~~pDl 358 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESG--ADVPYVGTAIPRTAWGAEDKRWLEMLGVEVKYRASLEDDMEAV-LEFEPDL 358 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCC--CEEEEEecCCCCccccHHHHHHHHhcCCCceeccCHHHHHHHH-hhCCCCE
Confidence 6777776665 788999999999 99998866532111 01 11100 01232233333 4569999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+|.... +..+|+++|||.+.+.
T Consensus 359 lig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 359 AIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred EEcCCc---chHHHHHcCCCEEEec
Confidence 998854 5678999999998854
No 116
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.29 E-value=38 Score=31.04 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred CCcccccccCHHHhh---cCcccc----------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh----
Q 039208 238 WGLPVKSWAPQVDVL---SHDSVV----------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE---- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~vL---~H~~v~----------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~---- 294 (331)
.++...+|+|+.++. .-.++. |+++|+|+|+....+ +...+.+. |.......
T Consensus 248 ~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~~~~~~~l~~ 322 (363)
T cd04955 248 PRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIYFKVGDDLAS 322 (363)
T ss_pred CcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeEecCchHHHH
Confidence 456666888886533 222222 999999999976542 22222221 33333221
Q ss_pred --hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 039208 295 --RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAESF 329 (331)
Q Consensus 295 --~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~~~ 329 (331)
.++++ ...++++.+++...+.=|.....+++++.+
T Consensus 323 ~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 323 LLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 23333 344566666665555556666666666543
No 117
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=68.88 E-value=41 Score=32.59 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--chH---HHhh------hHHHHHHHHHhhcCCCccE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--GQL---ALLN------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--~p~---~~~~------~~~l~~~l~~l~~~~~~d~ 77 (331)
|++++..+. . ...+++.|.+-| .+|+.+.+...... .+. +... ...+.+.+.. ++..+||+
T Consensus 282 kv~v~g~~~--~---~~~la~~L~elG--mevv~~~t~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~-~~~~~pDl 353 (416)
T cd01980 282 RVLVSGYEG--N---ELLVARLLIESG--AEVPYVSTSIPKTSLSAPDYEWLSALGVEVRYRKSLEDDIAA-VEEYRPDL 353 (416)
T ss_pred eEEEECCCc--h---hHHHHHHHHHcC--CEEEEEecCCCChhhhHHHHHHHHhcCCccccCCCHHHHHHH-HhhcCCCE
Confidence 555554444 3 555999999999 99998877532110 011 1100 0222222222 24568999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+|.... +..+|+++|||.+.+.
T Consensus 354 ~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 354 AIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred EEeCCh---hhHHHHHhCCCEEEec
Confidence 998844 6789999999998754
No 118
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.84 E-value=23 Score=31.92 Aligned_cols=90 Identities=8% Similarity=-0.061 Sum_probs=57.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHh-----------hhHHHHHHHHHhhcCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALL-----------NSPNLHKTLIIQSKTSN 74 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~-----------~~~~l~~~l~~l~~~~~ 74 (331)
||+++-..+.|++.-+.++.++|.++.|+-+|++++........ |+++. ....+.+++..+ +..+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l-~~~~ 79 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKHGKLGLGARRRLARAL-RRRR 79 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcccccchHHHHHHHHHH-hhcC
Confidence 57888888999999999999999999888999999986433211 21110 112223334333 4457
Q ss_pred ccEEEEcCcchhHHHHHHHcCCCeE
Q 039208 75 LKTLIIDFFHKVALQVSCSLNIPTY 99 (331)
Q Consensus 75 ~d~vI~D~~~~~~~~vA~~~giP~v 99 (331)
+|.+|.=........++...+++..
T Consensus 80 ~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 80 YDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred CCEEEECCCccHHHHHHHHhCCCeE
Confidence 9988755444444445555566654
No 119
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=68.66 E-value=46 Score=31.57 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCC-c----c-----------h---H-HH-----hhhHHH
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTL-R----G-----------Q---L-AL-----LNSPNL 62 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~-~----~-----------p---~-~~-----~~~~~l 62 (331)
||+++. +++..+.=|.++.++|.++ + .++.++.+....+ . . + + +. .+...+
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~--~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPD--LELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCC--CcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 455554 6888899999999999875 6 7777666542211 1 0 1 0 10 001111
Q ss_pred HHH---HHHhhcCCCccEEEEc--Ccch-hHHHHHHHcCCCeEEEecc
Q 039208 63 HKT---LIIQSKTSNLKTLIID--FFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~---l~~l~~~~~~d~vI~D--~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
... +.++++..+||+||+- .+.. .++.+|..+|||.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 111 2223345689988754 4444 5677888899999976544
No 120
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=68.53 E-value=9.2 Score=36.37 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=44.2
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh-----
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----- 294 (331)
.++...+++|+.+ .++..++. |+++|+|+|+... ..+...+.+. ..|+-++.
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~d~~~ 355 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFFDPDA 355 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCCCHHH
Confidence 4566668998765 34444443 9999999998643 4566666653 56776643
Q ss_pred -----hHHHH---hHHHHHHHHHHHHhc
Q 039208 295 -----RRVIE---GIRAPKEQAVGALSE 314 (331)
Q Consensus 295 -----~~lm~---~a~~l~~~~~~a~~~ 314 (331)
.++++ ..+++++.+++.+.+
T Consensus 356 la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 356 LAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 23333 345566666655544
No 121
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.51 E-value=31 Score=32.20 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHhh-----------hHHHHHHHHHhhcC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALLN-----------SPNLHKTLIIQSKT 72 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~~-----------~~~l~~~l~~l~~~ 72 (331)
+++|+++-.-+.|++.-..++-+.|.++.|+.++++++........ |.++.. ......+...+ +.
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~~~~~~~~~~~l~~~l-r~ 79 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTL-RK 79 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccccccchHHHHHHHHHh-hc
Confidence 4689999988999999999999999999999999999986554321 322211 11222233333 55
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.++|+||.=....-...++...++|.-.-+-
T Consensus 80 ~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 80 ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 6899888655555566677677887655443
No 122
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=68.44 E-value=48 Score=29.87 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH----H--H--h-------hhHHH--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL----A--L--L-------NSPNL-- 62 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~----~--~--~-------~~~~l-- 62 (331)
|||++..==|. |---+..|+++|.+ + |+|+++.+...++-. |+ . . . ..|.-
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV 76 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-Y--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCV 76 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-C--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHH
Confidence 46676663332 11227788888864 7 899998886544321 21 0 0 0 00100
Q ss_pred HHHHHHhhcCCCccEEEEcC----------cch---hHHHHHHHcCCCeEEEecc
Q 039208 63 HKTLIIQSKTSNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~l~~l~~~~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
.-.+..+. ..+||+||+-. ++. .++.-|.-.|||.+.++..
T Consensus 77 ~lal~~l~-~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 77 RVALDKLV-PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred HHHHHHhc-CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 11123332 35799999754 333 3444555679999999863
No 123
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=68.42 E-value=15 Score=32.81 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~ 49 (331)
+++...|+.|-...++++|..++.+ | +.|.|++.+-..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~ 60 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSE 60 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-H
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCH
Confidence 5566688999999999999999887 7 999999987543
No 124
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.59 E-value=15 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=46.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHH--HHHHhhc-CCCccEEEEcCc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHK--TLIIQSK-TSNLKTLIIDFF 83 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~--~l~~l~~-~~~~d~vI~D~~ 83 (331)
.-++|+-.||.|=..-..+++.+|..+| +.|+|++... ++........+ .-.++.+ =.++|++|.|-+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~e------l~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDl 176 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAPD------LLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDI 176 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHHH------HHHHHHHHHhcCchHHHHHHHhhcCCEEEEecc
Confidence 3588898999998888999999999889 9999998742 33333332221 1111211 137999999954
No 125
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=67.49 E-value=15 Score=34.88 Aligned_cols=86 Identities=8% Similarity=-0.040 Sum_probs=51.2
Q ss_pred EcCCC-CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC-cc---------------h------HH--------------
Q 039208 13 NPSPG-SSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-RG---------------Q------LA-------------- 55 (331)
Q Consensus 13 ~p~p~-~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~-~~---------------p------~~-------------- 55 (331)
+|+|- .|.-+=+-.+.++|++ . |+||+++-..... .. | .+
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~-~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 84 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAA-R--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSL 84 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHh-c--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcc
Confidence 35554 5888999999999966 4 7999988653211 10 0 00
Q ss_pred -HhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEE
Q 039208 56 -LLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 56 -~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
....+.+...+.++++..++|+|+...............|+|.+.-
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p~i~~ 131 (397)
T TIGR03087 85 PYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTPHVRGVPRIVD 131 (397)
T ss_pred hhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccccccCCCeEee
Confidence 0112334455556656678999998764332221113458898863
No 126
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=67.28 E-value=14 Score=33.58 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=31.7
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++...+|+++.+ ++...++. |+++|+|+|+.+.. .....+.+ +.|....
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~ 329 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVD 329 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeC
Confidence 4566668998654 34554444 99999999997643 33444433 6666554
No 127
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=66.63 E-value=39 Score=31.62 Aligned_cols=85 Identities=8% Similarity=-0.188 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---h---H-H--------HhhhHHHHHHHHH----hhcCCCcc
Q 039208 16 PGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---Q---L-A--------LLNSPNLHKTLII----QSKTSNLK 76 (331)
Q Consensus 16 p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p---~-~--------~~~~~~l~~~l~~----l~~~~~~d 76 (331)
.+-|=..-...+++.|.+.| |+|+++++....... . . + ......+...... .....++|
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 87 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLG--VDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEWNEENAERPLLDLDAD 87 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CCceEEecCCChhHHHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 34466777889999999999 999998864321100 0 0 0 0000111111111 11245899
Q ss_pred EEEEcCcchhHHHHHHHc-CCCeEEEe
Q 039208 77 TLIIDFFHKVALQVSCSL-NIPTYLFY 102 (331)
Q Consensus 77 ~vI~D~~~~~~~~vA~~~-giP~v~~~ 102 (331)
+|.......++...+.+. ++|++..+
T Consensus 88 vv~~h~~~~~~~~~~~~~~~~~~i~~~ 114 (372)
T cd03792 88 VVVIHDPQPLALPLFKKKRGRPWIWRC 114 (372)
T ss_pred EEEECCCCchhHHHhhhcCCCeEEEEe
Confidence 997665545555555555 89977544
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=66.40 E-value=10 Score=34.95 Aligned_cols=92 Identities=8% Similarity=-0.090 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHhh-----------------hHHHHHHHHH
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALLN-----------------SPNLHKTLII 68 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~~-----------------~~~l~~~l~~ 68 (331)
||+++-..+.|++.-+.++.+.|.++-|+.+||+++........ |+++.. ...+..+.+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRAL 80 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHH
Confidence 57888888999999999999999999666999999886443221 311100 0111222222
Q ss_pred hhcCCCccEEEEcCcchhHHHHHHHcCCCeEEE
Q 039208 69 QSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 69 l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
++..++|++|.-........++...+.+.+.+
T Consensus 81 -lr~~~yD~vi~~~~~~~s~~l~~~~~~~r~g~ 112 (319)
T TIGR02193 81 -LRAERYDAVIDAQGLIKSALVARMARGPRHGF 112 (319)
T ss_pred -HhhccchhhhhhhhhHHHHHHHHhhCCceecC
Confidence 35568999874333333445666666444444
No 129
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=65.81 E-value=14 Score=32.60 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCc-cEEEEcCcchhHH----HHHHHc
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNL-KTLIIDFFHKVAL----QVSCSL 94 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~-d~vI~D~~~~~~~----~vA~~~ 94 (331)
|+-.|...|.+|.++| ++|.++......+ ...+.+.|.+.++..++ .++++++...+.. ..+.++
T Consensus 47 ~~saMRhfa~~L~~~G--~~V~Y~~~~~~~~--------~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l~~~~~~~ 116 (224)
T PF04244_consen 47 FFSAMRHFADELRAKG--FRVHYIELDDPEN--------TQSFEDALARALKQHGIDRLHVMEPGDYRLEQRLESLAQQL 116 (224)
T ss_dssp HHHHHHHHHHHHHHTT----EEEE-TT-TT----------SSHHHHHHHHHHHH----EEEE--S-HHHHHHHHH----S
T ss_pred HHHHHHHHHHHHHhCC--CEEEEEeCCCccc--------cccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHhhhccc
Confidence 5678999999999999 9999998754332 11233333333322244 3556676655443 345567
Q ss_pred CCCeEEEe
Q 039208 95 NIPTYLFY 102 (331)
Q Consensus 95 giP~v~~~ 102 (331)
|||..++-
T Consensus 117 ~i~~~~~~ 124 (224)
T PF04244_consen 117 GIPLEVLE 124 (224)
T ss_dssp SS-EEEE-
T ss_pred CCceEEeC
Confidence 99987753
No 130
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=65.66 E-value=11 Score=33.75 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-c-h---HHHhhhHHH--HHHHHHhhcCCCccEEEE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-G-Q---LALLNSPNL--HKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-~-p---~~~~~~~~l--~~~l~~l~~~~~~d~vI~ 80 (331)
|||+++.--+-| ..|+..|.++| + |++-+..+.... . | ........+ .+-+.++++..++++||
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g--~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vI- 71 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAG--Y-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVI- 71 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcC--C-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEE-
Confidence 355555433333 47899999999 6 544333222211 0 1 011101111 22334444556888776
Q ss_pred cCcchhH-------HHHHHHcCCCeEEEe
Q 039208 81 DFFHKVA-------LQVSCSLNIPTYLFY 102 (331)
Q Consensus 81 D~~~~~~-------~~vA~~~giP~v~~~ 102 (331)
|...+++ ..+++++|||++.|-
T Consensus 72 DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 6655554 457778999988774
No 131
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=65.39 E-value=11 Score=35.26 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=41.2
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.... .+...+.+. ..|.-++. .++++ ..+++++.+++.+.+.=|.....+++
T Consensus 292 Ama~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 366 (374)
T TIGR03088 292 AMASGLPVIATAVG----GNPELVQHG-VTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAY 366 (374)
T ss_pred HHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999997653 455566563 56776643 22332 34456666666665556666666666
Q ss_pred HHHH
Q 039208 326 AESF 329 (331)
Q Consensus 326 v~~~ 329 (331)
.+.+
T Consensus 367 ~~~y 370 (374)
T TIGR03088 367 AGLY 370 (374)
T ss_pred HHHH
Confidence 5544
No 132
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=65.21 E-value=70 Score=27.29 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-hHHHHHHHcCCCeEEE
Q 039208 23 SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-VALQVSCSLNIPTYLF 101 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-~~~~vA~~~giP~v~~ 101 (331)
=...|.+.+.++| .++.+.++..+. .-..+...+.+++++.. .+..+||-.++-. ++..+|+++|+|.+.+
T Consensus 16 Ka~~l~~~~~~~~--~~~~~~~p~l~~----~p~~a~~~l~~~i~~~~--~~~~~liGSSlGG~~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 16 KAQALKQYFAEHG--PDIQYPCPDLPP----FPEEAIAQLEQLIEELK--PENVVLIGSSLGGFYATYLAERYGLPAVLI 87 (187)
T ss_pred HHHHHHHHHHHhC--CCceEECCCCCc----CHHHHHHHHHHHHHhCC--CCCeEEEEEChHHHHHHHHHHHhCCCEEEE
Confidence 3456777888888 777777664332 23334455555665541 1124666665544 7788999999999998
Q ss_pred ecccHHHH
Q 039208 102 YASSASAL 109 (331)
Q Consensus 102 ~~~~~~~~ 109 (331)
.++-....
T Consensus 88 NPav~p~~ 95 (187)
T PF05728_consen 88 NPAVRPYE 95 (187)
T ss_pred cCCCCHHH
Confidence 87654433
No 133
>PRK05973 replicative DNA helicase; Provisional
Probab=65.06 E-value=26 Score=31.23 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+++.-.||.|=..-.++++...+.+| ..|.|++.+...
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~G--e~vlyfSlEes~ 104 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSG--RTGVFFTLEYTE 104 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEEeCCH
Confidence 56677889999999999999998999 999999877553
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=65.01 E-value=21 Score=33.36 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHh-----------hhHHH---HHHHHHhhc
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALL-----------NSPNL---HKTLIIQSK 71 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~-----------~~~~l---~~~l~~l~~ 71 (331)
||+++-..+.|++.-..++.+.|.++-|+.+|++++........ |.++. ....+ .+++..+ +
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~l-r 79 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKAGERKLANQFHLIKVL-R 79 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcchHHHHHHHHHHHHHH-H
Confidence 58888888999999999999999998777999999876443211 31110 00111 2233333 4
Q ss_pred CCCccEEEEcCcchhHHHHHHHcCCCeEEE
Q 039208 72 TSNLKTLIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 72 ~~~~d~vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
..++|++|.=....-...++.-.|.+.-.-
T Consensus 80 ~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 80 ANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred hCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 568999885444445666777778886543
No 135
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=64.25 E-value=31 Score=33.34 Aligned_cols=85 Identities=11% Similarity=-0.058 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------------------h-----------------HHHhhhHHHHH
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRG------------------Q-----------------LALLNSPNLHK 64 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~------------------p-----------------~~~~~~~~l~~ 64 (331)
==.-+...+.+|.+++++|+|+++|+....... . .+......+..
T Consensus 16 ~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (419)
T cd03806 16 GERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGS 95 (419)
T ss_pred chHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHHHHH
Confidence 345677888888888444999999886444220 0 00011122222
Q ss_pred HHHHh--hcCCCccEEEEcCcchhHHHHHHHc-CCCeEEEecc
Q 039208 65 TLIIQ--SKTSNLKTLIIDFFHKVALQVSCSL-NIPTYLFYAS 104 (331)
Q Consensus 65 ~l~~l--~~~~~~d~vI~D~~~~~~~~vA~~~-giP~v~~~~~ 104 (331)
++..+ ....+||++|.+..++++..+++.+ ++|.+.+.-.
T Consensus 96 ~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~ 138 (419)
T cd03806 96 MILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHY 138 (419)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecC
Confidence 22211 1134799999888777777777764 7888776543
No 136
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.69 E-value=40 Score=28.97 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=36.3
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
.+.++++.+.++--|-....-++..|..+| .+|+++....+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G--~~vi~LG~~vp 123 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANG--FDVIDLGRDVP 123 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCC--cEEEECCCCCC
Confidence 456899999999999999999999999999 99999876533
No 137
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=63.15 E-value=75 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=21.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|+++|+|+|+.... .+...+.+. ..|.-++.
T Consensus 264 Ama~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~ 294 (335)
T cd03802 264 AMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS 294 (335)
T ss_pred HHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC
Confidence 99999999988653 444455442 46777653
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=62.39 E-value=20 Score=26.11 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=40.6
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhc-cceeehh--------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIR-DPLTVAE--------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELA 326 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lG-vG~~l~~--------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v 326 (331)
++++|+|+|+... ......+.+ | -++..+. +.+++ ..+++++.+++-+.+.-+...-+++|+
T Consensus 18 ~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 18 AMACGTPVISDDS----PGLREIFED--GEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHCCCeEEECCh----HHHHHHcCC--CCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999999865 333333333 3 3444432 33333 777788888887887888877777765
No 139
>PRK10307 putative glycosyl transferase; Provisional
Probab=62.33 E-value=38 Score=32.25 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=26.0
Q ss_pred cEEEEEcC---CCCC-CHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPS---PGSS-HLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~---p~~g-H~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||++++. |-.| =-.-+..|++.|.++| |+|+++++.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G--~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG--HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC--CeEEEEecC
Confidence 56777763 3111 1123579999999999 999999965
No 140
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=61.94 E-value=15 Score=29.05 Aligned_cols=38 Identities=13% Similarity=-0.139 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCC---CHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNPSPGSS---HLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p~p~~g---H~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+|+--|-.+ .-.-...|+.+.++|| |+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RG--hev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRG--HEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT---EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCC--CEEEEEEcCc
Confidence 467777666543 3456788999999999 9999988753
No 141
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=61.47 E-value=40 Score=30.44 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHhhcCCCccEEEEcCcc-----h-hHHHHHHHcCCCeEEEecc
Q 039208 65 TLIIQSKTSNLKTLIIDFFH-----K-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 65 ~l~~l~~~~~~d~vI~D~~~-----~-~~~~vA~~~giP~v~~~~~ 104 (331)
.|...++...||+|++-... . -+..+|+.+|+|++.+...
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34444444469999975432 2 5778999999999987654
No 142
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=61.46 E-value=87 Score=27.60 Aligned_cols=89 Identities=12% Similarity=0.027 Sum_probs=56.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-----chHHH-----hhhHHHHHHHHHhhcCCCccEEE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-----GQLAL-----LNSPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-----~p~~~-----~~~~~l~~~l~~l~~~~~~d~vI 79 (331)
|.+.-+|+.|-....-+|+++|.+++ |+|..++..+...- .|..+ ........++... .+--+||
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i--~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSa---lkn~~VI 78 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI--WRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSA---LKNYLVI 78 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh--hhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHH---hcceEEE
Confidence 55666999999999999999999999 99987766322211 13221 1111222232222 2455889
Q ss_pred EcCcchh------HHHHHHHcCCCeEEEec
Q 039208 80 IDFFHKV------ALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 80 ~D~~~~~------~~~vA~~~giP~v~~~~ 103 (331)
+|...+. ....|.++..++.++..
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl 108 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYL 108 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 9975542 34577788899877654
No 143
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=61.20 E-value=48 Score=29.37 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=30.0
Q ss_pred cEEEEEcCC--CCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSP--GSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p--~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.++.+++++ +.|-..-...|+.+|+.+| +.|.++-..
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~G--kKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLG--KKVVLIDFD 40 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcC--CeEEEEecC
Confidence 356666654 6789999999999999999 999887554
No 144
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=61.13 E-value=64 Score=32.91 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=51.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----h--------HH------HhhhHHHHHHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----Q--------LA------LLNSPNLHKTLII 68 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p--------~~------~~~~~~l~~~l~~ 68 (331)
.||.++.-=..|+++- ..|.++|.++.|+.++.=+..+...... + +. ......++++.+.
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~ 305 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKT 305 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777667788664 5678889888754444333332222111 1 11 1111122222232
Q ss_pred hhcCCCccEEEE-cC--cchhHHHHHHHcCC--CeEEEe
Q 039208 69 QSKTSNLKTLII-DF--FHKVALQVSCSLNI--PTYLFY 102 (331)
Q Consensus 69 l~~~~~~d~vI~-D~--~~~~~~~vA~~~gi--P~v~~~ 102 (331)
+ +..+||++|. |+ |....+..+++.|+ |.+.+.
T Consensus 306 i-~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYV 343 (608)
T PRK01021 306 I-LKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYV 343 (608)
T ss_pred H-HhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 2 3568998875 76 33356667778896 977654
No 145
>PRK12342 hypothetical protein; Provisional
Probab=60.99 E-value=35 Score=30.76 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=47.8
Q ss_pred CCHHHHHH----HHHHHHhcCCceEEEEEeCCCCC--Cc-c-----h-------HH-Hh---hhHHH--HHHHHHhhcCC
Q 039208 19 SHLLSMDE----LGKLILTHYPYFSVTIIISTFPT--LR-G-----Q-------LA-LL---NSPNL--HKTLIIQSKTS 73 (331)
Q Consensus 19 gH~~p~~~----la~~L~~~G~~h~Vt~~~~~~~~--~~-~-----p-------~~-~~---~~~~l--~~~l~~l~~~~ 73 (331)
.-+||+-. .|-+|.+.| -+||+++..... .. . - .+ +. ..+.+ ...|...++..
T Consensus 31 ~~iNp~D~~AlE~AlrLk~~g--~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~ 108 (254)
T PRK12342 31 AKISQFDLNAIEAASQLATDG--DEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKI 108 (254)
T ss_pred ccCChhhHHHHHHHHHHhhcC--CEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHh
Confidence 34677644 455566668 899988865432 11 0 0 00 00 01111 22333333334
Q ss_pred CccEEEEcCcch------hHHHHHHHcCCCeEEEecc
Q 039208 74 NLKTLIIDFFHK------VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 74 ~~d~vI~D~~~~------~~~~vA~~~giP~v~~~~~ 104 (331)
.||+|++-.... -+..+|+.+|+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 699999754332 4789999999999987644
No 146
>PRK00654 glgA glycogen synthase; Provisional
Probab=60.42 E-value=13 Score=36.36 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=28.6
Q ss_pred cEEEEEcCC------CCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNPSP------GSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p~p------~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+++++- .-|--.-...|+++|+++| |+|+++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G--~~V~v~~p~y 44 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG--HDVRVLLPGY 44 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 467776632 1245566689999999999 9999999864
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=58.70 E-value=1.4e+02 Score=27.05 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=53.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH----H--H-----h---hhHH--
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL----A--L-----L---NSPN-- 61 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~----~--~-----~---~~~~-- 61 (331)
.+|||++..==|.- ---+..|+++|.+.| +|+++.+...++-. |+ . . . ..|.
T Consensus 4 ~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g---~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC 79 (257)
T PRK13932 4 KKPHILVCNDDGIE-GEGIHVLAASMKKIG---RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC 79 (257)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHhCC---CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence 45789988744431 234677888888878 58888876544321 20 0 0 0 0111
Q ss_pred HHHHHHHhhcCCCccEEEEcC----------cch---hHHHHHHHcCCCeEEEecc
Q 039208 62 LHKTLIIQSKTSNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
..-.+..++ ..+||+||+-. ++. .++.-|...|||.+.++..
T Consensus 80 V~lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 80 IKVALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HHHHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 011122332 34799999764 222 3445555679999999863
No 148
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.16 E-value=84 Score=30.57 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHH----Hhh--------hHHHHHHHHHhhcCCCccEEEEcCcchhH
Q 039208 21 LLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLA----LLN--------SPNLHKTLIIQSKTSNLKTLIIDFFHKVA 87 (331)
Q Consensus 21 ~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~----~~~--------~~~l~~~l~~l~~~~~~d~vI~D~~~~~~ 87 (331)
-.-...+++.|.+-| .++..+.+....... ..+ ... ..... .++++++..++|++|.+.. .
T Consensus 309 ~~~~~~l~~~L~elG--~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~-e~~~~l~~~~~dliiG~s~---~ 382 (429)
T cd03466 309 PDFVVAITRFVLENG--MVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFF-DIESYAKELKIDVLIGNSY---G 382 (429)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHH-HHHHHHHhcCCCEEEECch---h
Confidence 345567778888889 898666553322110 001 000 00111 2233334568999999975 6
Q ss_pred HHHHHHcCCCeEEEe
Q 039208 88 LQVSCSLNIPTYLFY 102 (331)
Q Consensus 88 ~~vA~~~giP~v~~~ 102 (331)
..+|+++|||++.+.
T Consensus 383 ~~~a~~~~ip~~~~~ 397 (429)
T cd03466 383 RRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHcCCCEEEec
Confidence 799999999998653
No 149
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=57.73 E-value=51 Score=32.62 Aligned_cols=39 Identities=5% Similarity=0.005 Sum_probs=33.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL 50 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~ 50 (331)
+++.--|+.|=-.-.++++...+++| .+|.|++.+....
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~ 304 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRA 304 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHH
Confidence 66777889999999999999999999 9999998776543
No 150
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=57.67 E-value=27 Score=31.51 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=34.2
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.++.+.+|+++.+ ++...++. |+++|+|+|+-+.. .....+.+ .+.|..++.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~ 328 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPP 328 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECC
Confidence 4666668888753 34444443 99999999987654 44556666 366776653
No 151
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=57.63 E-value=34 Score=30.18 Aligned_cols=62 Identities=5% Similarity=-0.103 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCC--CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSS--HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~g--H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
++|++.-|.-+| -+||...++++|... | ++|....-+ . .++.+.+.+.+++++. +||+||+=
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~--~~v~~~~lP--v----~f~~~~~~l~~~i~~~----~Pd~Vi~~ 68 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAG--ATVISRIVP--N----TFFESIAAAQQAIAEI----EPALVIML 68 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhccccccCC--eEEEEEEeC--e----EehHHHHHHHHHHHHH----CCCEEEEe
Confidence 567766654444 399999999999864 4 666543221 1 2344455566666544 89999854
No 152
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=57.28 E-value=30 Score=25.38 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhh-------hH----HHHHHHHHhhcCCCccEEEEcCc---------
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLN-------SP----NLHKTLIIQSKTSNLKTLIIDFF--------- 83 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~-------~~----~l~~~l~~l~~~~~~d~vI~D~~--------- 83 (331)
++++++.|.+.| +++ +.|.. ... +++.. .. ....++ ++++..++|+||.-..
T Consensus 2 ~~~~~~~l~~lG--~~i-~AT~g-Ta~---~L~~~Gi~~~~~~~ki~~~~~~i~-~~i~~g~id~VIn~~~~~~~~~~~d 73 (90)
T smart00851 2 LVELAKRLAELG--FEL-VATGG-TAK---FLREAGLPVKTLHPKVHGGILAIL-DLIKNGEIDLVINTLYPLGAQPHED 73 (90)
T ss_pred HHHHHHHHHHCC--CEE-EEccH-HHH---HHHHCCCcceeccCCCCCCCHHHH-HHhcCCCeEEEEECCCcCcceeccC
Confidence 467888999999 887 34432 111 22110 00 001222 3335678999987532
Q ss_pred chhHHHHHHHcCCCeE
Q 039208 84 HKVALQVSCSLNIPTY 99 (331)
Q Consensus 84 ~~~~~~vA~~~giP~v 99 (331)
..+....|.+.|||++
T Consensus 74 ~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 74 GKALRRAAENIDIPGA 89 (90)
T ss_pred cHHHHHHHHHcCCCee
Confidence 2256678889999975
No 153
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=57.16 E-value=32 Score=32.55 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=33.7
Q ss_pred CCcccccccCHH---HhhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 238 WGLPVKSWAPQV---DVLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++...+++|.. ++++..++. |+++|+|+|+.... .....+.+. +.|.-++
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~ 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVD 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECC
Confidence 345566888764 356666653 99999999986543 445556563 6677664
No 154
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=57.13 E-value=75 Score=29.19 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.8
Q ss_pred cCCCccEEEEcCcc--hhHHHHHHHcCCCeEEEe
Q 039208 71 KTSNLKTLIIDFFH--KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 71 ~~~~~d~vI~D~~~--~~~~~vA~~~giP~v~~~ 102 (331)
+..++|+|...... ..+..+++++|+|.+...
T Consensus 79 ~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 79 RRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 44589988764322 245567888999988743
No 155
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=56.89 E-value=1.2e+02 Score=27.09 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 16 PGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 16 p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..-|+-.....|++.|.+.| |+|.+++..
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~--~~v~~~~~~ 38 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDR--FEHVVISLT 38 (365)
T ss_pred cCccHHHHHHHHHHHhhhcc--ceEEEEecC
Confidence 34689999999999999999 999988764
No 156
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=56.14 E-value=1.1e+02 Score=27.67 Aligned_cols=31 Identities=3% Similarity=0.007 Sum_probs=21.3
Q ss_pred CCccEEEEcC----------cch---hHHHHHHHcCCCeEEEec
Q 039208 73 SNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 73 ~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~ 103 (331)
.+||+||+-. ++. .++.-|.-.|||.+.++.
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 5799999754 333 334445557999999985
No 157
>PLN02275 transferase, transferring glycosyl groups
Probab=56.11 E-value=1.8e+02 Score=27.34 Aligned_cols=37 Identities=8% Similarity=-0.147 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCce-EEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYF-SVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h-~Vt~~~~~ 46 (331)
-++.++..+-.|.---+..++..|+++| | +|++++..
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~--~~~v~vi~~~ 42 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQA--SFQVDVVAYG 42 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcC--CceEEEEEec
Confidence 3455555677777788889999999988 6 79998754
No 158
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=55.69 E-value=1.4e+02 Score=26.91 Aligned_cols=92 Identities=8% Similarity=0.117 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH----HH---h-------hhHH--HH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL----AL---L-------NSPN--LH 63 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~----~~---~-------~~~~--l~ 63 (331)
||||+..==|. |---+..|+++|. .+ |+|+++.+...++-. |+ .. . ..|. ..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~ 76 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVK 76 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHH
Confidence 45666664333 2233667888886 46 799998886554321 20 00 0 0010 01
Q ss_pred HHHHHhhcCCCccEEEEcC----------cch---hHHHHHHHcCCCeEEEecc
Q 039208 64 KTLIIQSKTSNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
-.+..+. ..+||+||+-. ++. .++.-|...|||.+.++..
T Consensus 77 lal~~~~-~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 129 (253)
T PRK13935 77 LGYDVIM-DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSA 129 (253)
T ss_pred HHHHhhc-cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcc
Confidence 1122332 34799999754 333 3344555579999999863
No 159
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=54.74 E-value=1.1e+02 Score=33.55 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|+..=..+||++|+++|..|+|.++|-.
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~ 223 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQ 223 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 5677789999999998655699998743
No 160
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=54.44 E-value=96 Score=25.98 Aligned_cols=85 Identities=13% Similarity=-0.037 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCceEEEEEeCCCCCCcc------------------h--------HHHhhhHHHHHHHHH
Q 039208 16 PGSSHLLSMDELGKLI-LTHYPYFSVTIIISTFPTLRG------------------Q--------LALLNSPNLHKTLII 68 (331)
Q Consensus 16 p~~gH~~p~~~la~~L-~~~G~~h~Vt~~~~~~~~~~~------------------p--------~~~~~~~~l~~~l~~ 68 (331)
.+-||..=|+.|.+.+ .++. .++..+++..+..+.. | +.......+..++..
T Consensus 6 gsGGHt~eml~L~~~~~~~~~-~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~~~ 84 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRY-QPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFLQS 84 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcC-CCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHHHH
Confidence 4559999999999999 3333 1454455544332210 1 122222222222222
Q ss_pred h--hcCCCccEEEEcCcch--hHHHHHHHc------CCCeEEE
Q 039208 69 Q--SKTSNLKTLIIDFFHK--VALQVSCSL------NIPTYLF 101 (331)
Q Consensus 69 l--~~~~~~d~vI~D~~~~--~~~~vA~~~------giP~v~~ 101 (331)
+ +...+||+||+.--.. ....+|.-+ |.+.|.+
T Consensus 85 ~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 85 LRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 2 1245899999886443 344455556 7777764
No 161
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=54.08 E-value=20 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+||++.-.++.+=+. ...+.++|.++| ++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g--~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAG--WEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTT--SEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCC--CEEEEEECC
Confidence 478888877765555 999999999999 999998875
No 162
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=54.03 E-value=49 Score=28.58 Aligned_cols=63 Identities=13% Similarity=-0.113 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCC--HHHHHHHHHHHHhc-CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 8 IRLFFNPSPGSSH--LLSMDELGKLILTH-YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 8 ~~i~~~p~p~~gH--~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|||++.-|.-+|+ .||...+++.|..+ ...++|....-+ . .++.+...+.+++++. +||+||+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lP--V----~~~~~~~~l~~~l~~~----~PdlVIh 66 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELP--V----SYEKAFEALEELLEEH----QPDLVIH 66 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE---S----SHHHHHHHHHHHHHHH------SEEEE
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEec--C----chHhHHHHHHHHHHhc----CCcEEEE
Confidence 5677776655443 89999999999843 111666544321 1 2455566666666554 7998884
No 163
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=53.97 E-value=76 Score=30.94 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh------hhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL------NSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~------~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
.|+++..- -.....+++.|.+.| .+|..+.+..... ..+. ....+.+ ++++++..++|+||..
T Consensus 312 krvai~~~-----~~~~~~l~~~l~elG--m~v~~~~~~~~~~---~~~~~~~~~~~~~D~~~-l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 312 KKVAIAAE-----PDLLAAWATFFTSMG--AQIVAAVTTTGSP---LLQKLPVETVVIGDLED-LEDLACAAGADLLITN 380 (432)
T ss_pred CEEEEEcC-----HHHHHHHHHHHHHCC--CEEEEEEeCCCCH---HHHhCCcCcEEeCCHHH-HHHHHhhcCCCEEEEC
Confidence 45665542 246688888899999 9998776643321 1111 1112222 2333445689999988
Q ss_pred CcchhHHHHHHHcCCCeEEEe
Q 039208 82 FFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 82 ~~~~~~~~vA~~~giP~v~~~ 102 (331)
.. ...+|+++|||++.+.
T Consensus 381 s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 381 SH---GRALAQRLALPLVRAG 398 (432)
T ss_pred cc---hHHHHHHcCCCEEEec
Confidence 64 6789999999998653
No 164
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=53.67 E-value=96 Score=30.26 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=55.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceEEEEE-eCCCCCCcc--------h-----HHHhhhHHHHHHHHHhhcCCCccEEE
Q 039208 14 PSPGSSHLLSMDELGKLILTHYPYFSVTII-ISTFPTLRG--------Q-----LALLNSPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 14 p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~-~~~~~~~~~--------p-----~~~~~~~~l~~~l~~l~~~~~~d~vI 79 (331)
|.-+.|-..-.+.|.++|.+|| ++|--. +.+++.+.. | .+....+.++.++.+- ....|+.|
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg--~~VqpfKvGPDYIDP~~H~~atG~~srNLD~~mm~~~~v~~~f~~~--~~~adi~v 83 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRG--LKVQPFKVGPDYIDPGYHTAATGRPSRNLDSWMMGEEGVRALFARA--AADADIAV 83 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC--CcccccccCCCccCchhhhHhhCCccCCCchhhcCHHHHHHHHHHh--cCCCCEEE
Confidence 3445788999999999999999 887532 222222210 1 1111223444444433 23444444
Q ss_pred E-------cC-----cchhHHHHHHHcCCCeEEEecccHHHHH
Q 039208 80 I-------DF-----FHKVALQVSCSLNIPTYLFYASSASALA 110 (331)
Q Consensus 80 ~-------D~-----~~~~~~~vA~~~giP~v~~~~~~~~~~~ 110 (331)
. |- -...++.+|+.+|+|.+.+.-....+.+
T Consensus 84 IEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S 126 (451)
T COG1797 84 IEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRS 126 (451)
T ss_pred EeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHH
Confidence 3 33 1346899999999999998765544333
No 165
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.61 E-value=41 Score=31.10 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=29.2
Q ss_pred cEEEEEc-CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNP-SPGSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p-~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
||++|+. -+|.|=..--..+|..++++| ++|-+++++.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDP 39 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESST
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCC
Confidence 3555444 677899999999999999999 9988887753
No 166
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=53.23 E-value=49 Score=31.58 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------h---HHHhhhHHHHHHHHHhhcCCCccE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---------Q---LALLNSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p---~~~~~~~~l~~~l~~l~~~~~~d~ 77 (331)
+++.--|+.|=-.-+++++..++.+| ..|.|++.+...... . +.-.....+..+++.+ +..++++
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i-~~~~~~l 161 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI-EELKPDL 161 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH-HhcCCcE
Confidence 45566788999999999999999998 899998876433211 0 0000111223333332 3458999
Q ss_pred EEEcCcchh---------------------HHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKV---------------------ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~---------------------~~~vA~~~giP~v~~~ 102 (331)
||.|.+... ...+|++.|++.+.+.
T Consensus 162 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 162 VIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred EEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 999985321 2356788899987763
No 167
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.99 E-value=1.1e+02 Score=29.91 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-h----HHHhh----------hHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-Q----LALLN----------SPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p----~~~~~----------~~~l~~~l~~l~~~ 72 (331)
.+++++.- -.-.+.+++.|.+-| .+|..+.+....... . +++.. ...+.++.+. ++.
T Consensus 304 krv~i~g~-----~~~~~~la~~L~elG--m~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~-i~~ 375 (435)
T cd01974 304 KKFALYGD-----PDFLIGLTSFLLELG--MEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSL-LFT 375 (435)
T ss_pred CEEEEEcC-----hHHHHHHHHHHHHCC--CEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHH-Hhh
Confidence 45665542 233778888899999 999776653322110 0 11110 0222222222 244
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 58999998864 6889999999997654
No 168
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=52.93 E-value=67 Score=32.17 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----hHHHh------h----hHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----QLALL------N----SPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p~~~~------~----~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
+-.-.+.+++-|.+-| .+++.+.+......- .++.. + ...+.+ ++.++...++|++|....
T Consensus 371 dpd~~~~l~~fL~ElG--mepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~-l~~~l~~~~~DlliG~s~- 446 (515)
T TIGR01286 371 DPDFVMGLVRFVLELG--CEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWH-LRSLVFTEPVDFLIGNSY- 446 (515)
T ss_pred CHHHHHHHHHHHHHCC--CEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHH-HHHHHhhcCCCEEEECch-
Confidence 3345666777777889 997766553222110 01100 0 011111 222334458999998864
Q ss_pred hhHHHHHHHcCCCeEEEe
Q 039208 85 KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 85 ~~~~~vA~~~giP~v~~~ 102 (331)
+..+|+++|||.+.+.
T Consensus 447 --~k~~a~~~giPlir~g 462 (515)
T TIGR01286 447 --GKYIQRDTLVPLIRIG 462 (515)
T ss_pred --HHHHHHHcCCCEEEec
Confidence 6789999999987653
No 169
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.86 E-value=1.8e+02 Score=26.33 Aligned_cols=81 Identities=10% Similarity=-0.100 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h----HHHhhhHHHH--HHHHHhhcCCCccEEEEcCcc-
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q----LALLNSPNLH--KTLIIQSKTSNLKTLIIDFFH- 84 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p----~~~~~~~~l~--~~l~~l~~~~~~d~vI~D~~~- 84 (331)
.-..+..+++.|.++| |+|++++........ + +.......+. ..+...++..++|+|.+....
T Consensus 13 ~~~~~~~~~~~L~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~ 90 (355)
T cd03799 13 SETFILREILALEAAG--HEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLGIDHIHAHFGTT 90 (355)
T ss_pred chHHHHHHHHHHHhCC--CeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 4567899999999999 999999865432210 0 1111111111 111222234589999876532
Q ss_pred -hhHHHHHHH-cCCCeEEEe
Q 039208 85 -KVALQVSCS-LNIPTYLFY 102 (331)
Q Consensus 85 -~~~~~vA~~-~giP~v~~~ 102 (331)
.....++.+ .|+|++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~ 110 (355)
T cd03799 91 PATVAMLASRLGGIPYSFTA 110 (355)
T ss_pred hHHHHHHHHHhcCCCEEEEE
Confidence 233344444 478877643
No 170
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=52.85 E-value=91 Score=30.22 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh---------------hhHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL---------------NSPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~---------------~~~~l~~~l~~l~~~ 72 (331)
.+++++.-+ .-...+++.|.+.| .+|..+.+...... ..+. ....+.++. ++++.
T Consensus 300 k~v~i~~~~-----~~~~~l~~~L~e~G--~~v~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~el~-~~i~~ 369 (428)
T cd01965 300 KRVAIAGDP-----DLLLGLSRFLLEMG--AEPVAAVTGTDNPP--FEKRMELLASLEGIPAEVVFVGDLWDLE-SLAKE 369 (428)
T ss_pred CEEEEEcCh-----HHHHHHHHHHHHcC--CcceEEEEcCCCch--hHHHHHHhhhhcCCCceEEECCCHHHHH-HHhhc
Confidence 456666322 23568889999999 89877665432211 0000 111223333 23355
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
.+||+||.+.. ...+|+++|+|++.+.
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 68999999975 5789999999998653
No 171
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.50 E-value=26 Score=32.51 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=39.9
Q ss_pred ccccccCHHHhhcCcccc----------chhcCCcEeecccccchhh--hHHHHHhhhccceeeh
Q 039208 241 PVKSWAPQVDVLSHDSVV----------AVRTGVPMVAWPSNGDQMV--NMAFLVEKIRDPLTVA 293 (331)
Q Consensus 241 vv~~W~PQ~~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~--na~~v~~~lGvG~~l~ 293 (331)
++..|..=.++|+|.++. ++--|||+|.+|=.+-|+. -|++-.+.+|..+.+-
T Consensus 298 l~lsqqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv 362 (412)
T COG4370 298 LWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV 362 (412)
T ss_pred EEEeHHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec
Confidence 333555556899998876 8899999999999999865 4556566678888774
No 172
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.48 E-value=50 Score=28.81 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=35.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
.+.++++.+.++-.|-+...=++..|..+| .+|+++....
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G--~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNG--YEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCC--CEEEECCCCC
Confidence 457899999999999999999999999999 9999987643
No 173
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=50.90 E-value=19 Score=34.46 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHhhcCcccc----------chhcCCcEeec----cccc---------chhhhHHHHHhhhccceeeh
Q 039208 249 VDVLSHDSVV----------AVRTGVPMVAW----PSNG---------DQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 249 ~~vL~H~~v~----------al~~GVP~l~~----P~~~---------DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++++..++. ++++|+|+|.. |+.+ +|..|+..+.++ ++..++.
T Consensus 262 ~~~l~aADl~V~~SGt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~ 328 (385)
T TIGR00215 262 RKAMFAADAALLASGTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELL 328 (385)
T ss_pred HHHHHhCCEEeecCCHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhc
Confidence 4567766665 99999999999 8743 278899999986 8888764
No 174
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=50.31 E-value=35 Score=32.41 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=38.9
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh---------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE---------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELA 326 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~---------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v 326 (331)
|+++|+|+|+.+...+.- .+. -|.|+.+.. .++++ ..+++++.+++.+.+.=|-.+..+++.
T Consensus 318 Ama~G~PVV~t~~~~~~i-----~~~-~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~ 391 (397)
T TIGR03087 318 AMAMAKPVVASPEAAEGI-----DAL-PGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLD 391 (397)
T ss_pred HHHcCCCEEecCcccccc-----ccc-CCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998643321 122 255665532 23333 456677777766665666666666665
Q ss_pred HHH
Q 039208 327 ESF 329 (331)
Q Consensus 327 ~~~ 329 (331)
+.+
T Consensus 392 ~~l 394 (397)
T TIGR03087 392 ALL 394 (397)
T ss_pred HHh
Confidence 543
No 175
>PRK06849 hypothetical protein; Provisional
Probab=49.93 E-value=42 Score=31.99 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=26.2
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++++|+++-. -..-.+++++.|.++| |+|+++.+.
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~G--~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNAG--HTVILADSL 37 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 4567777742 2235789999999999 999988664
No 176
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=48.97 E-value=28 Score=34.04 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=28.2
Q ss_pred cEEEEEcCCC------CCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 8 IRLFFNPSPG------SSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 8 ~~i~~~p~p~------~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
|||+++++=. -|=-.-...|+++|+++| |+|.++++.+.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~ 45 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG--HDVRVLLPAYG 45 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC--CeEEEEecCCc
Confidence 5677776331 133345689999999999 99999998653
No 177
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=48.87 E-value=53 Score=30.64 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=21.3
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+.... .+...+.+. +.|..++
T Consensus 300 A~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~ 329 (388)
T TIGR02149 300 AMACGTPVVASATG----GIPEVVVDG-ETGFLVP 329 (388)
T ss_pred HHHcCCCEEEeCCC----CHHHHhhCC-CceEEcC
Confidence 99999999997543 455666663 5677664
No 178
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.52 E-value=63 Score=31.33 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=57.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------h---HHHhhhHHHHHHHHHhhcCCCccE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---------Q---LALLNSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p---~~~~~~~~l~~~l~~l~~~~~~d~ 77 (331)
+++---|+.|--.-+++++..|+++| .|.|++.+...... + +.-...-.++++++.+ +..+||+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l-~~~~p~l 171 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL-EQEKPDL 171 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH-HhcCCCE
Confidence 55566789999999999999999999 88888887654321 1 0001122334444433 3468999
Q ss_pred EEEcCcch-h--------------------HHHHHHHcCCCeEEE
Q 039208 78 LIIDFFHK-V--------------------ALQVSCSLNIPTYLF 101 (331)
Q Consensus 78 vI~D~~~~-~--------------------~~~vA~~~giP~v~~ 101 (331)
+|.|+... | ...+|++.||+.+.+
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99997442 1 235677778876654
No 179
>PRK11823 DNA repair protein RadA; Provisional
Probab=48.32 E-value=60 Score=31.82 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=59.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcch-HHHh-----------hhHHHHHHHHHhhcCCCccE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQ-LALL-----------NSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p-~~~~-----------~~~~l~~~l~~l~~~~~~d~ 77 (331)
+++.--|+.|=-.-+++++..++++| .+|.|++.+......- ..+. ....+.++++.+ +..++++
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g--~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i-~~~~~~l 159 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAG--GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI-EEEKPDL 159 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH-HhhCCCE
Confidence 55666788999999999999999889 9999998765432110 0000 011233343333 4458999
Q ss_pred EEEcCcchh---------------------HHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKV---------------------ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~---------------------~~~vA~~~giP~v~~~ 102 (331)
||.|..... ...+|++.|++.+.+.
T Consensus 160 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 160 VVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred EEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999985421 2446788999988873
No 180
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=48.30 E-value=83 Score=31.43 Aligned_cols=73 Identities=5% Similarity=-0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHHH-hcCCceEEEEEeCCCCCCcchHHHhh----------hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHH
Q 039208 23 SMDELGKLIL-THYPYFSVTIIISTFPTLRGQLALLN----------SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVS 91 (331)
Q Consensus 23 p~~~la~~L~-~~G~~h~Vt~~~~~~~~~~~p~~~~~----------~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA 91 (331)
-...+++.|. +-| .+|..+.+..... ...++.. ...+.+ +++.++..+||+||.+. +...+|
T Consensus 306 ~a~~l~~~L~~ElG--~~vv~~gt~~~~~-~~~~~~~~~~~~~~~~i~dD~~e-i~~~i~~~~pdliiG~~---~er~~a 378 (511)
T TIGR01278 306 HAVGMTKILARELG--IHIVGAGTYCKYD-ADWVREQVAGYVDEVLITDDFQE-VADAIAALEPELVLGTQ---MERHSA 378 (511)
T ss_pred HHHHHHHHHHHhCC--CEEEecCCchhhh-HHHHHHHHHhcCCCeEEeCCHHH-HHHHHHhcCCCEEEECh---HHHHHH
Confidence 3456777787 789 9987665432110 0111110 011122 22333455899999987 467889
Q ss_pred HHcCCCeEEEe
Q 039208 92 CSLNIPTYLFY 102 (331)
Q Consensus 92 ~~~giP~v~~~ 102 (331)
+++|||++.+.
T Consensus 379 ~~lgip~~~i~ 389 (511)
T TIGR01278 379 KRLDIPCGVIS 389 (511)
T ss_pred HHcCCCEEEec
Confidence 99999998764
No 181
>PRK06321 replicative DNA helicase; Provisional
Probab=48.28 E-value=93 Score=30.77 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=....+.+|...+ ..| ..|.|++.+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCC
Confidence 45667899999999999999887 458 89988887643
No 182
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=47.54 E-value=56 Score=27.82 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=42.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-c----h-HHHh------hhHHHHHHHHHhhcCCCccE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-G----Q-LALL------NSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-~----p-~~~~------~~~~l~~~l~~l~~~~~~d~ 77 (331)
++-+=..|.|-++-..+|+++|.++.|+++|.+.++...... . | -... .....+..++.+ +||+
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~----~P~~ 98 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHW----RPDL 98 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH------SE
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHh----CCCE
Confidence 344445678999999999999999854488876655321110 0 0 0000 112234445444 7887
Q ss_pred EEEcCcch--hHHHHHHHcCCCeEEEec
Q 039208 78 LIIDFFHK--VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 78 vI~D~~~~--~~~~vA~~~giP~v~~~~ 103 (331)
+|.--... -....|++.|||.+.+..
T Consensus 99 ~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 99 LIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEEES----HHHHHH-----S-EEEEEE
T ss_pred EEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 76544334 455677788999998754
No 183
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=47.39 E-value=81 Score=27.50 Aligned_cols=62 Identities=5% Similarity=-0.217 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCC--CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSS--HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~g--H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
|+|++.-|.-+| -.||...++++|... | ++|....- +. -+..+...+.+++++. +||+||+=
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~~~--~~v~~~~L--Pv----~~~~~~~~l~~~~~~~----~Pd~vl~~ 67 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTILK--EEVKGVIL--PV----EYEKIEDLIVTKIREM----KPILTLGI 67 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhccccCC--ceEEEEEe--CC----cHHHHHHHHHHHHHHH----CCCEEEEe
Confidence 456666655443 389999999999763 4 66644322 11 2445555555555544 78988853
No 184
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=46.96 E-value=1e+02 Score=26.86 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~ 49 (331)
+++.-.|+.|=..-.++++..++.+ | +.|.|++.+...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~~~ 54 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEMSK 54 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCCCH
Confidence 4556677889999999999888877 9 999999876543
No 185
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=46.75 E-value=1.4e+02 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=31.8
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEE
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTII 43 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~ 43 (331)
..++|++.-.|+.|-..-...++..|.+.| .+|-=+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf 39 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGF 39 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeE
Confidence 457899999999999999999999999999 887533
No 186
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=46.66 E-value=23 Score=33.15 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=21.0
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+.+-.++++. +.+. |.+..+.
T Consensus 289 A~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~ 318 (365)
T TIGR00236 289 APSLGKPVLVLRDTTERPE----TVEA-GTNKLVG 318 (365)
T ss_pred HHHcCCCEEECCCCCCChH----HHhc-CceEEeC
Confidence 9999999999876665542 3343 7776553
No 187
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=46.56 E-value=69 Score=27.97 Aligned_cols=64 Identities=8% Similarity=0.003 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCC--CHHHHHHHHHHHHhcCC-ceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSS--HLLSMDELGKLILTHYP-YFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~g--H~~p~~~la~~L~~~G~-~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
++|++.-|.-+| ..||...++++|..... .++|....- +. -+..+.+.+.+++++. +||+||+=
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~L--PV----~~~~~~~~l~~~~~~~----~Pd~vi~~ 68 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNGEQAGALRVHSALL--PV----EPRAAMAALSRLLDEL----QPSAVLLT 68 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhcccccCCCcEEEEEEe--CC----ChhHHHHHHHHHHHHh----CCCEEEEe
Confidence 677776655444 49999999999976410 155433321 11 2344555566666544 78998853
No 188
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=46.52 E-value=2.3e+02 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
|||++..==|. |-.-+..|+++|...| +|+++.+...+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g---~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG---EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC---cEEEEccCCCC
Confidence 35666553332 2345778889998877 58888876544
No 189
>PHA02542 41 41 helicase; Provisional
Probab=46.15 E-value=56 Score=32.34 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+++...|+.|=....+.+|...++.| +.|.|++-+-..
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g--~~Vl~fSLEM~~ 230 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQG--YNVLYISMEMAE 230 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEEeccCCH
Confidence 55667889999999999999998889 999988766433
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=45.60 E-value=67 Score=27.57 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL 50 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~ 50 (331)
++|+-..|.|=..-...||..+..+| .+|.+++.+.++.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~ 42 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRI 42 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSST
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCc
Confidence 56777778999999999999999999 9999999876653
No 191
>PLN02316 synthase/transferase
Probab=45.34 E-value=24 Score=38.28 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=30.5
Q ss_pred CcccEEEEEcC---CC--CCCH-HHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 5 WIIIRLFFNPS---PG--SSHL-LSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 5 ~~~~~i~~~p~---p~--~gH~-~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
..+|||+++++ |. .|-+ .-...|+++|+++| |+|.++++.+.
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G--h~V~VitP~Y~ 632 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN--HNVDIILPKYD 632 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC--CEEEEEecCCc
Confidence 34589998873 21 2333 33578999999999 99999998654
No 192
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=45.32 E-value=2e+02 Score=26.28 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=47.8
Q ss_pred ccEEEEEcCCCCCC-----HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 7 IIRLFFNPSPGSSH-----LLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 7 ~~~i~~~p~p~~gH-----~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
++||+++.- |.|+ +.-...++++|.+.| |+|.++.... . .++.++ ...++|+++.-
T Consensus 3 ~~~i~vl~g-g~s~e~~vsl~s~~~v~~aL~~~g--~~~~~~~~~~-~--------------~~~~~l-~~~~~d~vf~~ 63 (296)
T PRK14569 3 NEKIVVLYG-GDSPEREVSLKSGKAVLDSLISQG--YDAVGVDASG-K--------------ELVAKL-LELKPDKCFVA 63 (296)
T ss_pred CcEEEEEeC-CCCCchHhHHHHHHHHHHHHHHcC--CEEEEEcCCc-h--------------hHHHHh-hccCCCEEEEe
Confidence 678887764 4443 566778899999999 9998774320 0 012222 22378877652
Q ss_pred C-----cchhHHHHHHHcCCCeEE
Q 039208 82 F-----FHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 82 ~-----~~~~~~~vA~~~giP~v~ 100 (331)
. -..+...+.+.+|||++.
T Consensus 64 lhG~~ge~~~i~~~le~~gip~~G 87 (296)
T PRK14569 64 LHGEDGENGRVSALLEMLEIKHTS 87 (296)
T ss_pred CCCCCCCChHHHHHHHHcCCCeeC
Confidence 2 224567788899999665
No 193
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=45.27 E-value=45 Score=30.28 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=34.3
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.+..+ ...+.+. +.|..+.. +++++ .-.++++.+++..++ =|..+-.+++
T Consensus 289 a~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~ 361 (366)
T cd03822 289 AIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERY 361 (366)
T ss_pred HHHcCCCEEecCCCC-----hheeeeC-CCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHH
Confidence 999999999987654 2334443 66666543 23333 344455555555444 3444444443
Q ss_pred H
Q 039208 326 A 326 (331)
Q Consensus 326 v 326 (331)
.
T Consensus 362 ~ 362 (366)
T cd03822 362 L 362 (366)
T ss_pred H
Confidence 3
No 194
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.91 E-value=97 Score=29.83 Aligned_cols=83 Identities=13% Similarity=-0.034 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--hHHHhh--------hHHHHHHHHHhhcCCCccE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--QLALLN--------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p~~~~~--------~~~l~~~l~~l~~~~~~d~ 77 (331)
.+++++.-+ .+. ..+++.|.+.| .+|..+.+....... ...+.. .....+ +.+.++..+||+
T Consensus 288 krv~i~~~~--~~~---~~la~~l~elG--m~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e-~~~~i~~~~pDl 359 (410)
T cd01968 288 KKAALYTGG--VKS---WSLVSALQDLG--MEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRE-LKKLLKEKKADL 359 (410)
T ss_pred CEEEEEcCC--chH---HHHHHHHHHCC--CEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCHHH-HHHHHhhcCCCE
Confidence 356654432 333 66788889999 999888654322100 000000 011111 222234458999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEE
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
+|.... ...+|+++|+|.+..
T Consensus 360 ~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 360 LVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred EEECCc---chhhHHhcCCCEEEc
Confidence 999854 568899999998754
No 195
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=44.74 E-value=45 Score=25.44 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-c-hHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-G-QLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-~-p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
|||+++-.+++-| .||+.|.+.-. .+-.|+.+...... . ........... .+.++.++.++|++|..+=.+
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~-v~~v~~aPGN~G~~~~~~~~~~~~~d~~-~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPS-VEEVYVAPGNPGTAELGKNVPIDITDPE-ELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTT-EEEEEEEE--TTGGGTSEEE-S-TT-HH-HHHHHHHHTTESEEEESSHHH
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCC-CCEEEEeCCCHHHHhhceecCCCCCCHH-HHHHHHHHcCCCEEEECChHH
Confidence 6899999999988 57889976531 33334444321110 0 00000111222 233444567999999988555
Q ss_pred hH---HHHHHHcCCCeE
Q 039208 86 VA---LQVSCSLNIPTY 99 (331)
Q Consensus 86 ~~---~~vA~~~giP~v 99 (331)
-. .+..++.|||++
T Consensus 74 L~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 74 LVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHHHCCCcEE
Confidence 33 455555688864
No 196
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.69 E-value=2.3e+02 Score=25.31 Aligned_cols=38 Identities=8% Similarity=0.088 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+++.-.|+.|=..-.++++...+.+| ..|.|++.+.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~G--e~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRG--NPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCc
Confidence 55666889999999999999888889 999999987543
No 197
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.52 E-value=75 Score=30.88 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
..|+|+-..|.|=..-...||..|..+| ..|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcc
Confidence 3578888889999999999999999999 999999886543
No 198
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=44.44 E-value=41 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++...++.|+.+ +|...++. |+++|+|+|+.-.. .....+.+. +.|.-+.
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~ 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC
Confidence 4566668988764 45544443 99999999997443 344556553 5676554
No 199
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=44.10 E-value=1.3e+02 Score=28.79 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----h--------HH------HhhhHHHHHHHHHhhcCCCccEE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----Q--------LA------LLNSPNLHKTLIIQSKTSNLKTL 78 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p--------~~------~~~~~~l~~~l~~l~~~~~~d~v 78 (331)
.|+++ -..|.++|.++.|+.++.=+..+...... + +. ......++++.+. +...+||++
T Consensus 9 SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~-~~~~~pd~v 86 (373)
T PF02684_consen 9 SGDLH-GARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVER-IKEEKPDVV 86 (373)
T ss_pred cHHHH-HHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHH-HHHcCCCEE
Confidence 34433 35688899988865555555443322211 1 11 1111122222222 235689987
Q ss_pred E-EcC--cchhHHHHHHHcCCC
Q 039208 79 I-IDF--FHKVALQVSCSLNIP 97 (331)
Q Consensus 79 I-~D~--~~~~~~~vA~~~giP 97 (331)
| .|+ |....+..+++.|++
T Consensus 87 IlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 87 ILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred EEeCCCCccHHHHHHHHHhCCC
Confidence 6 675 333455566678888
No 200
>PRK05595 replicative DNA helicase; Provisional
Probab=44.07 E-value=96 Score=30.29 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=..-.+.+|..++ ++| +.|.|++.+-.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms 241 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMS 241 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCC
Confidence 45566889999999999998876 569 99999887643
No 201
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.55 E-value=90 Score=27.19 Aligned_cols=64 Identities=11% Similarity=-0.115 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCC--CHHHHHHHHHHHHhcCC-ceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSS--HLLSMDELGKLILTHYP-YFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~g--H~~p~~~la~~L~~~G~-~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
|+|++.-|.-+| -.||...++++|....- .++|....- +. -+..+...+.+++++. +||+||+=
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~L--PV----~~~~~~~~l~~~l~~~----~Pd~vlhl 67 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKKIGDAKVFGRVL--PV----SFKRAREELEKVLDEI----KPDITINL 67 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccccccCCcEEEEEEe--CC----chHhHHHHHHHHHHHh----CCCEEEEe
Confidence 456666554443 49999999999976520 145443221 11 2444555566655543 78988853
No 202
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=43.53 E-value=70 Score=30.33 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCeEEEecc
Q 039208 87 ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~ 104 (331)
.+.+|+++|+|.++..+.
T Consensus 264 lA~~Ak~~~vPfyV~Ap~ 281 (356)
T PRK08334 264 LAVLAKEHGIPFFTVAPL 281 (356)
T ss_pred HHHHHHHhCCCEEEEccc
Confidence 357888899999987643
No 203
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.96 E-value=58 Score=31.65 Aligned_cols=85 Identities=7% Similarity=0.040 Sum_probs=48.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceE-EEEEeCCCCCCcchH--H---HhhhHHHHHHHHHhhcCCCccEEE
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFS-VTIIISTFPTLRGQL--A---LLNSPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~-Vt~~~~~~~~~~~p~--~---~~~~~~l~~~l~~l~~~~~~d~vI 79 (331)
.+|+||++-.+++-| +|++.|.+.+ +. .+++.+. +....-. . ........++ .++++..++|+||
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~--~~~~~~~~pg-n~g~~~~~~~~~~~~~~~d~~~l-~~~a~~~~iD~Vv 73 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSN--LLSELKVFPG-NGGFPDDELLPADSFSILDKSSV-QSFLKSNPFDLIV 73 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCC--CCCEEEEECC-chHHhccccccccCcCcCCHHHH-HHHHHHcCCCEEE
Confidence 458999999999888 6889998887 44 3344432 2110000 0 0001122222 2344556899999
Q ss_pred EcCcchh---HHHHHHHcCCCeE
Q 039208 80 IDFFHKV---ALQVSCSLNIPTY 99 (331)
Q Consensus 80 ~D~~~~~---~~~vA~~~giP~v 99 (331)
.+.-... ...+++++|+|++
T Consensus 74 ~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 74 VGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ECCchHHHHHHHHHHHHcCCCcC
Confidence 8765443 3355667899854
No 204
>PRK08760 replicative DNA helicase; Provisional
Probab=42.65 E-value=1e+02 Score=30.56 Aligned_cols=37 Identities=5% Similarity=0.071 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=....+.+|...+. .| +.|.|++.+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs 269 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMS 269 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCC
Confidence 556678999999999999998875 58 89988877643
No 205
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=42.43 E-value=2.2e+02 Score=27.91 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=57.6
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchH---------------HHhhhHHHHHHHHHhhcC
Q 039208 9 RLFFNPS-PGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQL---------------ALLNSPNLHKTLIIQSKT 72 (331)
Q Consensus 9 ~i~~~p~-p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~---------------~~~~~~~l~~~l~~l~~~ 72 (331)
++++... .+.|=..-...|++.|+++| ++|..+=+. +....|. +......+++.+.++ .
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G--~~V~~fK~G-pd~~d~~~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~--~ 79 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRG--LRVQPFKVG-PDYIDPAYHTAATGRPSRNLDSWMMGEELVRALFARA--A 79 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCC--CCcceeecC-CCcccHHHHHHHhCCCcccCCceeCCHHHHHHHHHHh--c
Confidence 4665543 34688899999999999999 998877542 1111110 001112334444443 3
Q ss_pred CCccEEEEcCc------------chhHHHHHHHcCCCeEEEeccc
Q 039208 73 SNLKTLIIDFF------------HKVALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 73 ~~~d~vI~D~~------------~~~~~~vA~~~giP~v~~~~~~ 105 (331)
.+.|.+|.+-. ....+.+|+.++.|.+.+....
T Consensus 80 ~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 80 QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 46788886432 1246799999999999987644
No 206
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=42.37 E-value=1.2e+02 Score=27.52 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+..+|.+.-.|+.|-=.-.-.|++.|.++| ++|.++..+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g--~~VaVlAVD 66 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERG--KRVAVLAVD 66 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT----EEEEEE-
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcC--CceEEEEEC
Confidence 345688999999999999999999999999 999998764
No 207
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=42.23 E-value=1.6e+02 Score=29.53 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=47.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCCCCcchHHHhh----------hHHHHHHHHHhhcCCCccE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFPTLRGQLALLN----------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~~~~~p~~~~~----------~~~l~~~l~~l~~~~~~d~ 77 (331)
+++++. ...| ...+++.|. +-| .+|..+.+...... ..++.. ...+.+ +++.++..+||+
T Consensus 295 rv~I~g--d~~~---a~~l~~~L~~ElG--m~vv~~gt~~~~~~-~~~~~~~~~~~~~~~i~~D~~e-l~~~i~~~~Pdl 365 (519)
T PRK02910 295 RVFVFG--DATH---AVAAARILSDELG--FEVVGAGTYLREDA-RWVRAAAKEYGDEALITDDYLE-VEDAIAEAAPEL 365 (519)
T ss_pred EEEEEc--CcHH---HHHHHHHHHHhcC--CeEEEEecCCcchh-HHHHHHHHhcCCCeEEecCHHH-HHHHHHhcCCCE
Confidence 555553 2334 466777887 689 99987665322110 011100 011222 222334558999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
||.+.. ...+|+++|||++.+.
T Consensus 366 iiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 366 VLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred EEEcch---HHHHHHHcCCCEEEec
Confidence 998874 6779999999998764
No 208
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.22 E-value=2.3e+02 Score=24.81 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch----hHHHHHHHcCCCeEEE
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK----VALQVSCSLNIPTYLF 101 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~----~~~~vA~~~giP~v~~ 101 (331)
.+.+++.++| .+|++..+.. . .... .+.++.+ ...++|.||...... .....+.+.|+|.+.+
T Consensus 20 ~i~~~~~~~g--~~v~~~~~~~-~-----~~~~----~~~i~~~-~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 20 AAKAHAKALG--YELISTDAQG-D-----LTKQ----IADVEDL-LTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHcC--CEEEEEcCCC-C-----HHHH----HHHHHHH-HHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 6667888899 9988764421 1 1111 2233333 235799888754332 2235566789999988
Q ss_pred ec
Q 039208 102 YA 103 (331)
Q Consensus 102 ~~ 103 (331)
..
T Consensus 87 ~~ 88 (282)
T cd06318 87 DS 88 (282)
T ss_pred cC
Confidence 64
No 209
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=41.68 E-value=71 Score=27.21 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCceEEEEEeCCC
Q 039208 25 DELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
..||+++..+| ++||+++.+.
T Consensus 33 ~~lA~~~~~~G--a~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRG--AEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT---EEEEEE-TT
T ss_pred HHHHHHHHHCC--CEEEEEecCc
Confidence 57899999999 9999998863
No 210
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=41.12 E-value=2e+02 Score=25.67 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=51.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceE-EEEEeCCCCCCc-ch--HHH-hhhHHHHHHHHHhh-c-CCCccEEEEc
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFS-VTIIISTFPTLR-GQ--LAL-LNSPNLHKTLIIQS-K-TSNLKTLIID 81 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~-Vt~~~~~~~~~~-~p--~~~-~~~~~l~~~l~~l~-~-~~~~d~vI~D 81 (331)
=|+|.-.|..|--.-..+|..+|.++| +. +..+..+..... .+ +.+ .....++..+..-. + -.+-|+||.|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~--~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D 80 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERG--TKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD 80 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhc--ccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence 477888999999999999999999999 65 333333222110 01 111 11223333332221 1 1467999999
Q ss_pred Ccch------hHHHHHHHcCCCeEEEe
Q 039208 82 FFHK------VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 82 ~~~~------~~~~vA~~~giP~v~~~ 102 (331)
...+ -....|+..+.-..+++
T Consensus 81 slNyIKGfRYeLyC~ak~~~tt~Cvv~ 107 (281)
T KOG3062|consen 81 SLNYIKGFRYELYCEAKAARTTYCVVH 107 (281)
T ss_pred cccccccceeeeeeehhccceeEEEEE
Confidence 8543 12235555554433333
No 211
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=40.84 E-value=1.6e+02 Score=27.39 Aligned_cols=89 Identities=6% Similarity=-0.098 Sum_probs=48.5
Q ss_pred EEE-EEcCCCC-CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------------hHH-HhhhHHHHHHHHHhhcC
Q 039208 9 RLF-FNPSPGS-SHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------------QLA-LLNSPNLHKTLIIQSKT 72 (331)
Q Consensus 9 ~i~-~~p~p~~-gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------------p~~-~~~~~~l~~~l~~l~~~ 72 (331)
+|+ +++.... |--.-+..|++.|.++| |++++++........ +.. ......+.. +.++++.
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-l~~~l~~ 79 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADR--YRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQ-LYRLLRQ 79 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccc--cceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHH-HHHHHHH
Confidence 444 4444444 55689999999999999 998888643221110 000 000011112 2223344
Q ss_pred CCccEEEEcCcch-hHHHHHHHcCCCeEE
Q 039208 73 SNLKTLIIDFFHK-VALQVSCSLNIPTYL 100 (331)
Q Consensus 73 ~~~d~vI~D~~~~-~~~~vA~~~giP~v~ 100 (331)
.+||+|-+..... ++..++...++|...
T Consensus 80 ~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 80 LRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred hCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 5899887654333 344556667888643
No 212
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.75 E-value=1.7e+02 Score=22.70 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|+++.+.++-.|-.-..-++..|..+| .+|+++...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G--~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAG--FEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCC--CEEEECCCC
Confidence 588999999999999999999999999 999988764
No 213
>PRK08506 replicative DNA helicase; Provisional
Probab=40.42 E-value=1.4e+02 Score=29.45 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=....+.+|...+.+| +.|.|++.+-.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g--~~V~~fSlEMs 231 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQD--KGVAFFSLEMP 231 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcC--CcEEEEeCcCC
Confidence 55666889999999999999998899 99999887644
No 214
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=40.20 E-value=2.8e+02 Score=24.93 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH-HH---------hhhHH--HHHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL-AL---------LNSPN--LHKTLI 67 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~-~~---------~~~~~--l~~~l~ 67 (331)
||||+..==|. |-.=+..|+++|.+.| +|+++.+...++-. |+ ++ ...|. ..-.+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~~---~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~v~GTPaDcV~~gl~ 76 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALRELA---DVTVVAPDRERSGASHSLTLTRPLRVEKVDNGFYAVDGTPTDCVHLALN 76 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhCC---CEEEEeCCCCCcCCcccccCCCCeEEEEecCCeEEECCcHHHHHHHHHH
Confidence 45666653332 2233677888888764 79988876544321 20 00 00110 011123
Q ss_pred HhhcCCCccEEEEcC----------cchh---HHHHHHHcCCCeEEEecc
Q 039208 68 IQSKTSNLKTLIIDF----------FHKV---ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 68 ~l~~~~~~d~vI~D~----------~~~~---~~~vA~~~giP~v~~~~~ 104 (331)
.+. ..+||+||+-. ++.. ++.-|...|||.+.++..
T Consensus 77 ~l~-~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 77 GLL-DPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred hhc-cCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 332 24799999754 3333 344555579999999863
No 215
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.65 E-value=2.8e+02 Score=26.63 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC-c-c-----------h--HHHhh------hHHHHHH
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL-R-G-----------Q--LALLN------SPNLHKT 65 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~-~-~-----------p--~~~~~------~~~l~~~ 65 (331)
++||+++ ++.+=-++=|.+|.+++.+.++ .+..++.+....+ . . | .+..+ ...+...
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~~~~-~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~ 80 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEKDPD-FELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNI 80 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHhCCC-CceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHH
Confidence 4455544 5788889999999999999864 4444443332221 1 0 2 11111 1111111
Q ss_pred ---HHHhhcCCCccEEEE--cCcch-hHHHHHHHcCCCeEEEec
Q 039208 66 ---LIIQSKTSNLKTLII--DFFHK-VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 66 ---l~~l~~~~~~d~vI~--D~~~~-~~~~vA~~~giP~v~~~~ 103 (331)
+++++.+.+||+|+. |.... +++.+|...+||...+-.
T Consensus 81 i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEA 124 (383)
T COG0381 81 IEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEA 124 (383)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEec
Confidence 223334558998875 44444 456777778999887643
No 216
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.36 E-value=1.3e+02 Score=29.23 Aligned_cols=73 Identities=7% Similarity=-0.018 Sum_probs=44.6
Q ss_pred HHHHHHHHHH-hcCCceEEEEEeCCCCCCcchHHHhh----------hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHH
Q 039208 23 SMDELGKLIL-THYPYFSVTIIISTFPTLRGQLALLN----------SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVS 91 (331)
Q Consensus 23 p~~~la~~L~-~~G~~h~Vt~~~~~~~~~~~p~~~~~----------~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA 91 (331)
-...+++.|. +-| .+|..+++..... ..+++.. ...+.+ ++++++..+||++|.+.+ ...+|
T Consensus 312 ~~~~l~~~L~~elG--~~vv~~~~~~~~~-~~~~~~~~~~~~~~~~i~~D~~e-~~~~i~~~~pdliig~~~---~~~~a 384 (430)
T cd01981 312 HVAAATRILAREMG--FRVVGAGTYCKED-AKWFREQATGYCDEALITDDHTE-VGDMIARTEPELIFGTQM---ERHIG 384 (430)
T ss_pred HHHHHHHHHHHHcC--CEEEeccCCCccH-HHHHHHHHHhcCCceEEecCHHH-HHHHHHhhCCCEEEecch---hhHHH
Confidence 5577788887 789 9988866542221 0111110 011111 233334558999999974 56679
Q ss_pred HHcCCCeEEEe
Q 039208 92 CSLNIPTYLFY 102 (331)
Q Consensus 92 ~~~giP~v~~~ 102 (331)
+++|+|.+.+.
T Consensus 385 ~~~gip~~~~~ 395 (430)
T cd01981 385 KRLDIPCAVIS 395 (430)
T ss_pred HHcCCCEEEEe
Confidence 99999998774
No 217
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=39.24 E-value=1.6e+02 Score=28.35 Aligned_cols=37 Identities=5% Similarity=0.023 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=....+.+|..++ ++| +.|.|++.+..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~ 234 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMS 234 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCC
Confidence 55666889999999999998887 679 99999987643
No 218
>PRK11519 tyrosine kinase; Provisional
Probab=39.12 E-value=1.6e+02 Score=30.71 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.1
Q ss_pred ccEEEEEc--CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNP--SPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p--~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+.++++++ .|+.|=-.-...||..|+..| ++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g--~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTN--KRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC
Confidence 44655555 467888889999999999999 999888554
No 219
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.49 E-value=52 Score=32.31 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=34.4
Q ss_pred chhcCCcEeecccccchhhhHHHHHhh----h-ccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEK----I-RDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLA 320 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~----l-GvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~ 320 (331)
|+++|+|+|+- |.......+.+. + ..|..++. .++++ ..+++++.+++.+++-=+..+
T Consensus 390 Ama~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~ 465 (475)
T cd03813 390 AMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLER 465 (475)
T ss_pred HHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999995 444455555541 0 25666643 22332 344555555555444444344
Q ss_pred HHHHHH
Q 039208 321 VVAELA 326 (331)
Q Consensus 321 ~l~~~v 326 (331)
..+++.
T Consensus 466 ~~~~y~ 471 (475)
T cd03813 466 MIDSYR 471 (475)
T ss_pred HHHHHH
Confidence 444443
No 220
>PRK06921 hypothetical protein; Provisional
Probab=38.30 E-value=74 Score=28.78 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCCcchHHHhhhH---HHHHHHHHhhcCCCccEEEEcCc
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTLRGQLALLNSP---NLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~p~~~~~~~---~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
-++|.-.+|.|=..-...++++|.++ | +.|.+++... ++..... .+.+.++.+ ...|+||.|-+
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~------l~~~l~~~~~~~~~~~~~~---~~~dlLiIDDl 186 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVE------GFGDLKDDFDLLEAKLNRM---KKVEVLFIDDL 186 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHH------HHHHHHHHHHHHHHHHHHh---cCCCEEEEecc
Confidence 48888888999888889999999988 9 9999887531 2222222 222233333 36899999976
No 221
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=37.56 E-value=1e+02 Score=30.38 Aligned_cols=90 Identities=10% Similarity=0.125 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------h--HHH-hhhHHHHHHHHHhhcCCCccE
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---------Q--LAL-LNSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p--~~~-~~~~~l~~~l~~l~~~~~~d~ 77 (331)
+++.--|+.|=-.-+++++..++.+| ..|.|++.+...... . .+. .....+..+++. ++..++++
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~-i~~~~~~~ 173 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICAN-IEEENPQA 173 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHH-HHhcCCcE
Confidence 55666789999999999999999999 899999876443211 0 000 001122333322 24458999
Q ss_pred EEEcCcchh---------------------HHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKV---------------------ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~---------------------~~~vA~~~giP~v~~~ 102 (331)
||.|..... ...+|++.|+..+.+.
T Consensus 174 vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 174 CVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred EEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 999975421 2345788899988763
No 222
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.47 E-value=1.4e+02 Score=28.77 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=31.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
++++-..|.|=..-...||..+..+| ++|.+++.+.+.
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR 246 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFR 246 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccC
Confidence 45555567888999999999999999 999999987554
No 223
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=37.39 E-value=57 Score=29.66 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+.+.. .....+.+. ..|..+.
T Consensus 281 a~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~~ 310 (355)
T cd03799 281 AMAMGLPVISTDVS----GIPELVEDG-ETGLLVP 310 (355)
T ss_pred HHHcCCCEEecCCC----CcchhhhCC-CceEEeC
Confidence 99999999997653 233445442 4777664
No 224
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.33 E-value=2.1e+02 Score=23.41 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=44.5
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcch-HHH--hhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 12 FNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQ-LAL--LNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 12 ~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p-~~~--~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
..+-+|.|=-.-...||..|++.| ++|.++=.+....... ++. .....++..++.+ ...++|+||.|.-..
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g--~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~-~~~~yD~VIiD~pp~ 78 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLG--YKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDV-DWGELDYLVIDMPPG 78 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcC--CcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHh-hcCCCCEEEEeCCCC
Confidence 344678888899999999999999 9999885542221111 111 1122334444433 224799999997544
No 225
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=37.32 E-value=1.7e+02 Score=28.30 Aligned_cols=38 Identities=5% Similarity=0.012 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~~ 49 (331)
+++...|+.|=....++++..++. .| ..|.|++.+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~ 236 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSA 236 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCH
Confidence 556668899999999999998875 68 899999877543
No 226
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=37.32 E-value=98 Score=27.74 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=34.2
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh--------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE--------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~--------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
|+++|+|+|+... ..+...+.+ -|..+..+. .++++ ..+++++.+++.+.+-=|-.+..+++.+
T Consensus 288 a~a~g~PvI~~~~----~~~~e~~~~-~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 288 AMACGLPVVATDV----GDNAELVGD-TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred HHhcCCCEEEcCC----CChHHHhhc-CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998543 445555555 244333221 22332 3444555555544444455555555444
No 227
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=37.26 E-value=1e+02 Score=25.30 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCccEEEEcCcch---hHHHHHHHcCCCeEEEec
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFHK---VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~~---~~~~vA~~~giP~v~~~~ 103 (331)
+.+.+.++++..+||+|+.-.... .+..+|.++|.|++.-.+
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 444555555555899888765433 567899999999887654
No 228
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=36.99 E-value=99 Score=30.56 Aligned_cols=82 Identities=9% Similarity=-0.066 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHh-h--------hHHHHHHHHHhhcCCCccE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLALL-N--------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~-~--------~~~l~~~l~~l~~~~~~d~ 77 (331)
.+++++.-+ . -..++++.|.+.| .+|..+.+....... ..++. . .....++. +.++..+||+
T Consensus 325 k~vaI~~~~--~---~~~~la~~l~ElG--m~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d~~~~e~~-~~i~~~~pDl 396 (475)
T PRK14478 325 KRVLLYTGG--V---KSWSVVKALQELG--MEVVGTSVKKSTDEDKERIKELMGPDAHMIDDANPRELY-KMLKEAKADI 396 (475)
T ss_pred CEEEEEcCC--c---hHHHHHHHHHHCC--CEEEEEEEECCCHHHHHHHHHHcCCCcEEEeCCCHHHHH-HHHhhcCCCE
Confidence 356664333 2 2347778889999 999887664322100 00100 0 01112222 2224458999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEE
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~ 100 (331)
+|.. .+...+|+++|||++-
T Consensus 397 iig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 397 MLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred EEec---CchhhhhhhcCCCEEE
Confidence 9997 4577999999999874
No 229
>PRK04940 hypothetical protein; Provisional
Probab=36.86 E-value=1e+02 Score=26.26 Aligned_cols=49 Identities=10% Similarity=-0.051 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhc-CC-CccEEEEcCcch-hHHHHHHHcCCCeEEEecccHH
Q 039208 59 SPNLHKTLIIQSK-TS-NLKTLIIDFFHK-VALQVSCSLNIPTYLFYASSAS 107 (331)
Q Consensus 59 ~~~l~~~l~~l~~-~~-~~d~vI~D~~~~-~~~~vA~~~giP~v~~~~~~~~ 107 (331)
...+.++++++.. +. ++.+||-.+.-. |+..+|+++|+|+|.+.+.--.
T Consensus 43 ~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 43 MQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred HHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 3455555554432 21 456777666543 8999999999999999876433
No 230
>PRK05636 replicative DNA helicase; Provisional
Probab=36.85 E-value=92 Score=31.11 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~ 48 (331)
+++...|+.|=....+.+|...+ ++| ..|.|++.+-.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs 305 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMS 305 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCC
Confidence 46677889999999999998876 468 88888876643
No 231
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=36.71 E-value=2.9e+02 Score=24.15 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc--hhHHHHHHHcCCCeEEE
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH--KVALQVSCSLNIPTYLF 101 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~--~~~~~vA~~~giP~v~~ 101 (331)
+..+.+++.++| .++.+..+.... ...+.+...+...++|.||..... .-......+.|+|++.+
T Consensus 18 ~~~i~~~~~~~g--y~~~~~~~~~~~-----------~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 18 LEGIEGALLEQR--YDLALFPLLSLA-----------RLKRYLESTTLAYLTDGLLLASYDLTERLAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHCC--CEEEEEeCCCcH-----------HHHHHHHHHHHhcCCCEEEEecCccChHHHHHHhhcCCCEEEE
Confidence 457778888999 999987653111 112333322234589988876532 22233445679999988
Q ss_pred ec
Q 039208 102 YA 103 (331)
Q Consensus 102 ~~ 103 (331)
..
T Consensus 85 ~~ 86 (269)
T cd06297 85 DA 86 (269)
T ss_pred cc
Confidence 64
No 232
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=36.65 E-value=2.3e+02 Score=25.37 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH----HH---h-------hhHHH--H
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL----AL---L-------NSPNL--H 63 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~----~~---~-------~~~~l--~ 63 (331)
||||+..==|. |--=+..|+++|.+.| +|+++.+....+-. |+ .+ . ..|.- .
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g---~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~ 76 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG---EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVI 76 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC---CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHH
Confidence 35555553221 2234667888898887 68888876544321 20 00 0 01110 1
Q ss_pred HHHHHhhcCCCccEEEEcCc----------ch---hHHHHHHHcCCCeEEEecc
Q 039208 64 KTLIIQSKTSNLKTLIIDFF----------HK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~~----------~~---~~~~vA~~~giP~v~~~~~ 104 (331)
-.+..+. ..+||+||+-.- +. .++.-|.-.|||.+.++..
T Consensus 77 ~gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 77 LGINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred HHHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 1123332 357999997642 22 3445555679999999863
No 233
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=36.45 E-value=1.3e+02 Score=25.82 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCccEEEEcCcc------hhHHHHHHHcCCCeEEEe
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFH------KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~------~~~~~vA~~~giP~v~~~ 102 (331)
+.+.+.++++...+|+|+.-... ..+..+|.++|.|.+.-.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 33344444343468888766444 478889999999977643
No 234
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.12 E-value=2e+02 Score=26.95 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.9
Q ss_pred cEEEEEc-CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNP-SPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p-~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+|++||. -+|-|=..---++|-.|++.| .+|.+++++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStD 39 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTD 39 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeC
Confidence 5766666 567888888888999999999 886666654
No 235
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=36.05 E-value=1.9e+02 Score=26.18 Aligned_cols=75 Identities=8% Similarity=-0.104 Sum_probs=45.7
Q ss_pred ccEEEEEcCC-CCCCHH---HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 7 IIRLFFNPSP-GSSHLL---SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 7 ~~~i~~~p~p-~~gH~~---p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
+++|+++.-. +.=|-. -...+.++|.++| |+|.++.... +.++.+ +..++|+|+.=.
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g--~~v~~i~~~~----------------~~~~~~-~~~~~D~v~~~~ 64 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAG--YDAHPIDPGE----------------DIAAQL-KELGFDRVFNAL 64 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCC--CEEEEEecCc----------------chHHHh-ccCCCCEEEEec
Confidence 3577766622 222544 6688999999999 9998875421 011111 234789888431
Q ss_pred -----cchhHHHHHHHcCCCeEE
Q 039208 83 -----FHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 83 -----~~~~~~~vA~~~giP~v~ 100 (331)
.......+.+++|+|++.
T Consensus 65 ~g~~~~~~~~~~~le~~gi~~~g 87 (304)
T PRK01372 65 HGRGGEDGTIQGLLELLGIPYTG 87 (304)
T ss_pred CCCCCCccHHHHHHHHcCCCccC
Confidence 122345677888999764
No 236
>PRK14098 glycogen synthase; Provisional
Probab=35.97 E-value=66 Score=31.88 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.2
Q ss_pred cEEEEEcCCC------CCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNPSPG------SSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p~p~------~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+++++=. -|=-.-+..|.++|+++| |+|.++++.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g--~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEG--FEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 8899887421 133456788999999999 9999998854
No 237
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.74 E-value=91 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCC
Q 039208 23 SMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.-+++|..|++.| .+||++...
T Consensus 10 ig~E~A~~l~~~g--~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELG--KEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESS
T ss_pred HHHHHHHHHHHhC--cEEEEEecc
Confidence 4578999999999 999999865
No 238
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.55 E-value=88 Score=28.21 Aligned_cols=63 Identities=17% Similarity=-0.014 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh------HHHHHHHcCCCeE
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV------ALQVSCSLNIPTY 99 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~------~~~vA~~~giP~v 99 (331)
-||+.|.++| ++|-..++- .-....+.+.++.+. .++|+||+.--... ...+|+.+|.|++
T Consensus 25 ~la~~L~~~G--~~v~~~~~V---------gD~~~~I~~~l~~a~--~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv 91 (255)
T COG1058 25 FLADELTELG--VDLARITTV---------GDNPDRIVEALREAS--ERADVVITTGGLGPTHDDLTAEAVAKALGRPLV 91 (255)
T ss_pred HHHHHHHhcC--ceEEEEEec---------CCCHHHHHHHHHHHH--hCCCEEEECCCcCCCccHhHHHHHHHHhCCCcc
Confidence 4899999999 998887652 112233344444332 25999998875542 3468888999988
Q ss_pred EE
Q 039208 100 LF 101 (331)
Q Consensus 100 ~~ 101 (331)
.-
T Consensus 92 ~~ 93 (255)
T COG1058 92 LD 93 (255)
T ss_pred cC
Confidence 75
No 239
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.51 E-value=1.4e+02 Score=26.10 Aligned_cols=64 Identities=9% Similarity=-0.077 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCC--CHHHHHHHHHHHHhcCC-ceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSS--HLLSMDELGKLILTHYP-YFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~g--H~~p~~~la~~L~~~G~-~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
++|++.-|.-++ ..||...++++|....- .++|....- +. -+..+...+.+++++ .+||+||+=
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~i~~~~l--PV----~y~~~~~~l~~~l~~----~~Pd~vih~ 68 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPGKEIGGAEIIKRQL--PT----VFGKSAEVLKEAIEE----VQPDAVICI 68 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHccccccCCcEEEEEEE--CC----ChHHHHHHHHHHHHH----hCCCEEEEe
Confidence 467776665554 49999999999976421 144433221 11 133445555555544 378988854
No 240
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=35.51 E-value=1.4e+02 Score=26.85 Aligned_cols=80 Identities=11% Similarity=-0.164 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------hH-----------HHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG------QL-----------ALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~------p~-----------~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
-|--.-+..|+++|.++| |+|++++........ .. ............. .....++|+|++
T Consensus 15 gG~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dii~~ 91 (365)
T cd03809 15 TGIGRYARELLRALLKLD--PEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRL-LLLLLGLDLLHS 91 (365)
T ss_pred CcHHHHHHHHHHHHHhcC--CceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHH-HhhhcCCCeeee
Confidence 355566899999999999 999998875432211 00 0000000111111 112358999998
Q ss_pred cCcchhHHHHHHHcCCCeEEEec
Q 039208 81 DFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 81 D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.....+.. ...++|.+...-
T Consensus 92 ~~~~~~~~---~~~~~~~i~~~h 111 (365)
T cd03809 92 PHNTAPLL---RLRGVPVVVTIH 111 (365)
T ss_pred cccccCcc---cCCCCCEEEEec
Confidence 77655433 567899887653
No 241
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=35.43 E-value=32 Score=31.01 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc-CCCccEEEEcC------cchhHHHHHHHcCCC
Q 039208 25 DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK-TSNLKTLIIDF------FHKVALQVSCSLNIP 97 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~-~~~~d~vI~D~------~~~~~~~vA~~~giP 97 (331)
..++++|+++| .+||+++-. .... .+.+.-. =-..|.|..+. .....+.+|+++|+|
T Consensus 124 ~~~a~~L~~~G--I~vtli~Ds-------a~~~-------~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vP 187 (253)
T PRK06372 124 IDMAKLLVKSG--IDVVLLTDA-------SMCE-------AVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKP 187 (253)
T ss_pred HHHHHHHHHCC--CCEEEEehh-------HHHH-------HHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCC
Confidence 36888888888 888876531 1111 1111100 01234444443 233456788999999
Q ss_pred eEEEecc
Q 039208 98 TYLFYAS 104 (331)
Q Consensus 98 ~v~~~~~ 104 (331)
.++...+
T Consensus 188 v~V~~~s 194 (253)
T PRK06372 188 FYSLTIS 194 (253)
T ss_pred EEEEeec
Confidence 9986433
No 242
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=35.40 E-value=1.7e+02 Score=26.50 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=47.2
Q ss_pred CCHHHHHHH----HHHHHh--cCCceEEEEEeCCCCCCcc---------h----HHH----hhhH--HHHHHHHHhhcCC
Q 039208 19 SHLLSMDEL----GKLILT--HYPYFSVTIIISTFPTLRG---------Q----LAL----LNSP--NLHKTLIIQSKTS 73 (331)
Q Consensus 19 gH~~p~~~l----a~~L~~--~G~~h~Vt~~~~~~~~~~~---------p----~~~----~~~~--~l~~~l~~l~~~~ 73 (331)
.-+||+-.. |-+|.+ .| -+||++|...+.... . .+. .... .....+.+..+..
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~--~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~ 110 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYG--GEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKI 110 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCC--ceEEEEEecchhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhc
Confidence 456666544 455666 45 779988865333211 0 000 0111 1233445544566
Q ss_pred CccEEEEc-----Ccch-hHHHHHHHcCCCeEEEec
Q 039208 74 NLKTLIID-----FFHK-VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 74 ~~d~vI~D-----~~~~-~~~~vA~~~giP~v~~~~ 103 (331)
++|+|+.- .-.. -+..+|+.+|.|.+.+..
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 89988853 2222 578899999999988653
No 243
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.26 E-value=1.1e+02 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCccEEEEcCcch---hHHHHHHHcCCCeEEEecc
Q 039208 63 HKTLIIQSKTSNLKTLIIDFFHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~l~~l~~~~~~d~vI~D~~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
.+.+.++++..+||+|+.-.... .+..+|.++|.|.+.-.+.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 34444444444789988765433 6788999999998875443
No 244
>PRK07206 hypothetical protein; Provisional
Probab=35.23 E-value=1.4e+02 Score=28.59 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=45.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc---ch-----HHHhh-hHHHHHHHHHhhcCCCccEEE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR---GQ-----LALLN-SPNLHKTLIIQSKTSNLKTLI 79 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~---~p-----~~~~~-~~~l~~~l~~l~~~~~~d~vI 79 (331)
+++++-..+. -..+++++.++| +++.+++....... .. +.... .....++++ +++..++|.||
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G--~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~d~vi 75 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRG--IEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVE-FLRKLGPEAII 75 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcC--CeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHH-HHHHcCCCEEE
Confidence 5666664322 346889999999 99888875422110 00 00000 011222222 23456899998
Q ss_pred E--cCcchhHHHHHHHcCCC
Q 039208 80 I--DFFHKVALQVSCSLNIP 97 (331)
Q Consensus 80 ~--D~~~~~~~~vA~~~giP 97 (331)
. |.....+..+++++|+|
T Consensus 76 ~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 76 AGAESGVELADRLAEILTPQ 95 (416)
T ss_pred ECCCccHHHHHHHHHhcCCC
Confidence 4 44445666788888888
No 245
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=35.05 E-value=96 Score=29.36 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=23.4
Q ss_pred CcccccccCHHH---hhcCcccc---------------chhcCCcEeecccc
Q 039208 239 GLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSN 272 (331)
Q Consensus 239 ~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~ 272 (331)
.+...+|+|+.+ +++..++. |+++|+|+|+.+..
T Consensus 251 ~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 251 RVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred eEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 355558887653 34444443 99999999998775
No 246
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=34.86 E-value=3.2e+02 Score=24.05 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=40.4
Q ss_pred CHHHHH-HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc----hhHHHHHHHc
Q 039208 20 HLLSMD-ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH----KVALQVSCSL 94 (331)
Q Consensus 20 H~~p~~-~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~----~~~~~vA~~~ 94 (331)
++..+. .+-+++.+.| +++.++.+. + -. ...+.++.+. ..++|.||.-... .-....+.+.
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~~~~~~---~----~~----~~~~~i~~~~-~~~~dgiii~~~~~~~~~~~~~~~~~~ 78 (289)
T cd01540 13 WFQTEWKFAKKAAKEKG--FTVVKIDVP---D----GE----KVLSAIDNLG-AQGAKGFVICVPDVKLGPAIVAKAKAY 78 (289)
T ss_pred HHHHHHHHHHHHHHHcC--CEEEEccCC---C----HH----HHHHHHHHHH-HcCCCEEEEccCchhhhHHHHHHHHhC
Confidence 444443 4667888899 998877542 1 01 1122333332 3579988765432 2234567788
Q ss_pred CCCeEEEe
Q 039208 95 NIPTYLFY 102 (331)
Q Consensus 95 giP~v~~~ 102 (331)
|||.|.+.
T Consensus 79 ~iPvV~~~ 86 (289)
T cd01540 79 NMKVVAVD 86 (289)
T ss_pred CCeEEEec
Confidence 99999885
No 247
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.68 E-value=86 Score=27.65 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
+.|--.-..+++..+...| ++||+++++..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g--~~v~yvsTe~T 67 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNG--YRVTYVSTELT 67 (235)
T ss_pred CccHHHHHHHHHHHHHhCC--ceEEEEEechh
Confidence 4567777889999999999 99999998754
No 248
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.54 E-value=2.9e+02 Score=24.35 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhh---hHHHHHHHHHhhc--CCCccEEEEcCcc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLN---SPNLHKTLIIQSK--TSNLKTLIIDFFH 84 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~---~~~l~~~l~~l~~--~~~~d~vI~D~~~ 84 (331)
+++.|--+.+-.--|..-++...... -++.++|+..... +-++.. ......++..+.+ ..++|.+|.-.|.
T Consensus 4 lvINPNsT~smTe~~~~~a~~v~~~~--~~l~~~t~~~~~p--~~Ieg~~de~~a~~~~l~ei~~~~~~GvdaiiIaCf~ 79 (230)
T COG4126 4 LVINPNSTASMTESMGETARKVASAD--TELISVTSPRDGP--ASIEGQEDEALAAPGLLREIADGEEQGVDAIIIACFS 79 (230)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCCC--ceEEEEccCCCCC--ccccCcchHHHhhhHHHHHhhcccccCCcEEEEEecC
Confidence 44556666677777788888888888 8888888742221 112211 1112233333332 3469999999888
Q ss_pred hhHHHHHHHc-CCCeEEEecc
Q 039208 85 KVALQVSCSL-NIPTYLFYAS 104 (331)
Q Consensus 85 ~~~~~vA~~~-giP~v~~~~~ 104 (331)
-.+...+++. ++|++.+.-+
T Consensus 80 DPgl~~~Re~~~~PviGi~eA 100 (230)
T COG4126 80 DPGLAAARERAAIPVIGICEA 100 (230)
T ss_pred ChHHHHHHHHhCCCceehhHH
Confidence 8888888884 9998876543
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.43 E-value=1.5e+02 Score=27.36 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhH-----HHHHHHHHhhcCCCccEEEEcCc
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSP-----NLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~-----~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
.+++.-.+|.|=..-+..+|++|.++| ..|+|++.+. ++..... .+.+.++.+ .++|++|.|-+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~~~------l~~~lk~~~~~~~~~~~l~~l---~~~dlLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHFPE------FIRELKNSISDGSVKEKIDAV---KEAPVLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEHHH------HHHHHHHHHhcCcHHHHHHHh---cCCCEEEEecC
Confidence 488888889998888999999999999 9999987632 3332222 233444444 37899998864
No 250
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.29 E-value=1.4e+02 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCeEEEecc
Q 039208 87 ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~ 104 (331)
.+.+|+++|||.++..++
T Consensus 241 lAl~Ak~~~VPfyV~a~~ 258 (329)
T PRK06371 241 KAVLAKVNGIPFYVAAPG 258 (329)
T ss_pred HHHHHHHcCCCEEEeccc
Confidence 456788899999988764
No 251
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=34.25 E-value=1.1e+02 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCCce--EEEEEeC
Q 039208 20 HLLSMDELGKLILTHYPYF--SVTIIIS 45 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h--~Vt~~~~ 45 (331)
=-.-+..|+++|+++| | +|+++|.
T Consensus 28 ~~~~v~~La~~L~~~G--~~~~V~v~t~ 53 (439)
T TIGR02472 28 QTKYVLELARALARRS--EVEQVDLVTR 53 (439)
T ss_pred cchHHHHHHHHHHhCC--CCcEEEEEec
Confidence 3346789999999999 9 9999985
No 252
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=34.04 E-value=2.6e+02 Score=23.00 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=26.9
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 12 FNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 12 ~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
...-+|.|=..-...||..|+++| ++|.++-..
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g--~~VlliD~D 36 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKG--KKVLLIDLD 36 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTT--S-EEEEEES
T ss_pred EcCCCCccHHHHHHHHHhcccccc--ccccccccC
Confidence 344677888899999999999999 999998764
No 253
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=33.87 E-value=39 Score=32.91 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 22 LSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 22 ~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
.-...|+++|+++| |+|+++++.+.
T Consensus 20 ~~~~~L~~aL~~~G--~~V~Vi~p~y~ 44 (476)
T cd03791 20 DVVGALPKALAKLG--HDVRVIMPKYG 44 (476)
T ss_pred HHHHHHHHHHHHCC--CeEEEEecCCc
Confidence 34567999999999 99999997543
No 254
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=33.85 E-value=37 Score=30.17 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 22 LSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 22 ~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.-.-.|+++|+++| |+|+++++.
T Consensus 20 dv~~~L~kaL~~~G--~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQG--HDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT---EEEEEEE-
T ss_pred HHHHHHHHHHHhcC--CeEEEEEcc
Confidence 44678999999999 999999975
No 255
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=33.61 E-value=32 Score=26.56 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh--------------h---hHHHHHHHHHhhcCCCccEEEEcC
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL--------------N---SPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~--------------~---~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
+-.=+.++++.|.+.| .++. .|.. ... ++.. . .+.+.+++ ++.++|+||.-+
T Consensus 11 dk~~~~~~a~~l~~~G--~~i~-aT~g-Ta~---~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i----~~~~idlVIn~~ 79 (116)
T cd01423 11 SKPELLPTAQKLSKLG--YKLY-ATEG-TAD---FLLENGIPVTPVAWPSEEPQNDKPSLRELL----AEGKIDLVINLP 79 (116)
T ss_pred cchhHHHHHHHHHHCC--CEEE-EccH-HHH---HHHHcCCCceEeeeccCCCCCCchhHHHHH----HcCCceEEEECC
Confidence 4456789999999999 8873 4432 111 1110 0 02333333 456899999843
Q ss_pred c---------chhHHHHHHHcCCCeE
Q 039208 83 F---------HKVALQVSCSLNIPTY 99 (331)
Q Consensus 83 ~---------~~~~~~vA~~~giP~v 99 (331)
. .++....|-++|||++
T Consensus 80 ~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 80 SNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred CCCCCccccCcEeeehhhHhhCCccc
Confidence 2 2456678999999986
No 256
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.41 E-value=71 Score=26.10 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=33.8
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEe
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIII 44 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~ 44 (331)
..++||++.+.+.-||=.=.--++++|++.| .+|....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~G--feVi~~g 47 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAG--FEVINLG 47 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCC--ceEEecC
Confidence 3688999999999999999999999999999 9997653
No 257
>PRK12377 putative replication protein; Provisional
Probab=33.38 E-value=1.5e+02 Score=26.61 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=45.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhH------HHHHHHHHhhcCCCccEEEEcC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSP------NLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~------~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
.++|.-.+|.|=..-...+++.|.+.| +.|.+++... ++..... ...++++.+ ..+|+||.|-
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~------l~~~l~~~~~~~~~~~~~l~~l---~~~dLLiIDD 171 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPD------VMSRLHESYDNGQSGEKFLQEL---CKVDLLVLDE 171 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHH------HHHHHHHHHhccchHHHHHHHh---cCCCEEEEcC
Confidence 478888889998888999999999999 9998876532 2221111 122344444 4799999997
Q ss_pred c
Q 039208 83 F 83 (331)
Q Consensus 83 ~ 83 (331)
+
T Consensus 172 l 172 (248)
T PRK12377 172 I 172 (248)
T ss_pred C
Confidence 6
No 258
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=33.38 E-value=2.3e+02 Score=22.46 Aligned_cols=74 Identities=9% Similarity=0.000 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcc---------hH------------HHhhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRG---------QL------------ALLNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------p~------------~~~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
..++-+.|.++| ..+.++|........ .+ .+-....++.+++++ .-.+-+++..|-
T Consensus 82 ~~~~L~~l~~~~--~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~-~~~p~~~~~vgD 158 (176)
T PF13419_consen 82 VRELLERLKAKG--IPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKL-GIPPEEILFVGD 158 (176)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHH-TSSGGGEEEEES
T ss_pred hhhhhhhccccc--ceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHc-CCCcceEEEEeC
Confidence 345667788889 999888764211100 00 011122344445444 222345665555
Q ss_pred cchhHHHHHHHcCCCeEEE
Q 039208 83 FHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 83 ~~~~~~~vA~~~giP~v~~ 101 (331)
.. .....|++.|++++.+
T Consensus 159 ~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 159 SP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SH-HHHHHHHHTTSEEEEE
T ss_pred CH-HHHHHHHHcCCeEEeC
Confidence 44 7888899999988764
No 259
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=33.34 E-value=4.7e+02 Score=25.57 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchH-HH--------------hhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 17 GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQL-AL--------------LNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~-~~--------------~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+.|=..-...|++.|.++| ++|..+=+. +....|. .. .....+.+.+.++ ..+.|++|.+
T Consensus 10 ~vGKT~vt~~L~~~L~~~G--~~V~~fK~g-~d~~D~~~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~--~~~~D~viVE 84 (449)
T TIGR00379 10 GVGKTTISTGIMKALSRRK--LRVQPFKVG-PDYIDPMFHTQATGRPSRNLDSFFMSEAQIQECFHRH--SKGTDYSIIE 84 (449)
T ss_pred CCcHHHHHHHHHHHHHHCC--CceeEEccC-CCCCCHHHHHHHhCCchhhCCcccCCHHHHHHHHHHh--cccCCEEEEe
Confidence 4677888999999999999 999877442 1100121 00 0112233333333 3467999976
Q ss_pred Ccc------------hhHHHHHHHcCCCeEEEecccH
Q 039208 82 FFH------------KVALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 82 ~~~------------~~~~~vA~~~giP~v~~~~~~~ 106 (331)
-.. ...+++|+.+|.|.+.+.....
T Consensus 85 GagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 85 GVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred cCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 531 2367999999999999886553
No 260
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=33.29 E-value=74 Score=29.73 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=38.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh--------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE--------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~--------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
|+++|+|+|+.... .....+.+. ..|..++. .+++. ..+++++.+++.+.+.=+.....+++++
T Consensus 293 A~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 293 ALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHcCCCEEEcCCC----CchhhcccC-CceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999987643 334445553 56665543 22332 2345555555555555555666666655
Q ss_pred HH
Q 039208 328 SF 329 (331)
Q Consensus 328 ~~ 329 (331)
.+
T Consensus 368 ~~ 369 (372)
T cd03792 368 LI 369 (372)
T ss_pred HH
Confidence 44
No 261
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=33.26 E-value=2.4e+02 Score=25.62 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=52.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC-CcchH-----HHhhhHHHHHHHHHhhcCCCccEEEEcCc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT-LRGQL-----ALLNSPNLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~-~~~p~-----~~~~~~~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
|+++-.|+.|=..-...|.+.|.+.| .+|.++..+... ....| .+.....++..+++.+. +-++||.|..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~--~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls--~~~iVI~Dd~ 79 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKG--KEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS--KDTIVILDDN 79 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT--T-SEEEE-S-
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcC--CEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc--cCeEEEEeCC
Confidence 67788999999999999999999999 999888643211 00011 22233334444444433 2388999975
Q ss_pred ch------hHHHHHHHcCCCeEEEeccc
Q 039208 84 HK------VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 84 ~~------~~~~vA~~~giP~v~~~~~~ 105 (331)
.+ -...+|++.+.++.+++...
T Consensus 80 nYiKg~RYelyclAr~~~~~~c~i~~~~ 107 (270)
T PF08433_consen 80 NYIKGMRYELYCLARAYGTTFCVIYCDC 107 (270)
T ss_dssp --SHHHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred chHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 53 34579999999988776543
No 262
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.17 E-value=2.1e+02 Score=23.49 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCccEEEEcCcch---hHHHHHHHcCCCeEEEecc
Q 039208 61 NLHKTLIIQSKTSNLKTLIIDFFHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 61 ~l~~~l~~l~~~~~~d~vI~D~~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
.+.+.+.++.+..+||+|+.-.... .+..+|.++|.|.+.-.+.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 3344455554445789998665332 7889999999999886654
No 263
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.92 E-value=3.3e+02 Score=23.70 Aligned_cols=67 Identities=12% Similarity=-0.066 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch----hHHHHHHHcCCCeEEE
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK----VALQVSCSLNIPTYLF 101 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~----~~~~vA~~~giP~v~~ 101 (331)
.+-+++.++| .++.+.......+ .. .-.+.++.+. ..++|.||...... -....+.+.|||.+.+
T Consensus 20 gi~~~~~~~g--~~~~~~~~~~~~~----~~----~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 20 GYENEAKKLG--VSVDIQAAPSEGD----QQ----GQLSIAENMI-NKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHhC--CeEEEEccCCCCC----HH----HHHHHHHHHH-HhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 4667778889 8888764321111 01 1122333332 24799988765321 2345566789999987
Q ss_pred ec
Q 039208 102 YA 103 (331)
Q Consensus 102 ~~ 103 (331)
..
T Consensus 89 ~~ 90 (275)
T cd06320 89 ND 90 (275)
T ss_pred CC
Confidence 54
No 264
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=32.81 E-value=1.3e+02 Score=29.40 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
-|+++-.+|.|=..-...||..|..+| ++|.+++.+.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccc
Confidence 477788889999999999999999999 999999886554
No 265
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=32.72 E-value=1.7e+02 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHHHHHHcCCCeEEEecc
Q 039208 87 ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~ 104 (331)
.+.+|+++|+|.++..+.
T Consensus 251 lA~~Ak~~~vPfyV~ap~ 268 (339)
T PRK06036 251 HSVLAKEHEIPFYVAAPL 268 (339)
T ss_pred HHHHHHHhCCCEEEEeec
Confidence 356788899999987654
No 266
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.68 E-value=4.1e+02 Score=24.68 Aligned_cols=86 Identities=12% Similarity=-0.040 Sum_probs=47.8
Q ss_pred ccEEEEEcCCC-CCCHHHHH-HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 7 IIRLFFNPSPG-SSHLLSMD-ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 7 ~~~i~~~p~p~-~gH~~p~~-~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
..+|.+++.-. ...+..+. .+-++..++| .+|++..+.. .+ ..... ..++.+. ..++|.||.....
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G--~~v~~~~~~~-~d----~~~q~----~~i~~li-~~~vdgIiv~~~d 90 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKELG--VDVTYDGPTE-PS----VSGQV----QLINNFV-NQGYNAIIVSAVS 90 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHhC--CEEEEECCCC-CC----HHHHH----HHHHHHH-HcCCCEEEEecCC
Confidence 45788888433 23344444 3445566788 8887633211 11 11112 2333332 3489999886544
Q ss_pred h----hHHHHHHHcCCCeEEEecc
Q 039208 85 K----VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 85 ~----~~~~vA~~~giP~v~~~~~ 104 (331)
. -...-|.+.|||.+.+-..
T Consensus 91 ~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 91 PDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHHHHCCCeEEEeCCC
Confidence 2 2344577789999997543
No 267
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.59 E-value=3.2e+02 Score=24.47 Aligned_cols=88 Identities=7% Similarity=-0.050 Sum_probs=48.1
Q ss_pred EEEEEcCCCCCCHHHHHHHH-HHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 9 RLFFNPSPGSSHLLSMDELG-KLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la-~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
+|.|+=.+-.|- -+++.|. .+.++|.+ .+|-++++..-. ......+.....++.++||++|+-.-..
T Consensus 4 KiGiiKlGNig~-s~~idl~lDErAdRed-I~vrv~gsGaKm--------~pe~~~~~~~~~~~~~~pDf~i~isPN~a~ 73 (277)
T PRK00994 4 KIGIIKLGNIGM-SPVIDLLLDERADRED-IDVRVVGSGAKM--------GPEEVEEVVKKMLEEWKPDFVIVISPNPAA 73 (277)
T ss_pred EEEEEEecccch-HHHHHHHHHhhhcccC-ceEEEeccCCCC--------CHHHHHHHHHHHHHhhCCCEEEEECCCCCC
Confidence 556665554443 3445544 56677742 888777764211 1122233333333456899887665332
Q ss_pred hH----HHHHHHcCCCeEEEecccH
Q 039208 86 VA----LQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 86 ~~----~~vA~~~giP~v~~~~~~~ 106 (331)
.+ ..+-.+.|+|+++++-.+.
T Consensus 74 PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 74 PGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred CCchHHHHHHHhcCCCEEEEcCCCc
Confidence 23 3344445999999875543
No 268
>PRK09165 replicative DNA helicase; Provisional
Probab=32.37 E-value=1.8e+02 Score=28.88 Aligned_cols=38 Identities=5% Similarity=-0.051 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc---------------CCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH---------------YPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~---------------G~~h~Vt~~~~~~~~ 49 (331)
+++...|+.|=....+.+|...+.+ | ..|.|++.+-..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlEMs~ 272 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLEMSA 272 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCcCCH
Confidence 5566788999999999999888753 7 889888876443
No 269
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=32.30 E-value=3.3e+02 Score=25.80 Aligned_cols=75 Identities=19% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHhcCCceEE--EEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh---------
Q 039208 18 SSHLLSMDELGKLILTHYPYFSV--TIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV--------- 86 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~V--t~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~--------- 86 (331)
.|-+-|-+.|...|.+.+ +| |++..+. |+....+...+-+.++++..+||++|.-+.+.+
T Consensus 31 ~g~vGp~~~l~~~l~~~~---eIv~TiiCGDn------yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~ 101 (349)
T PF07355_consen 31 EGPVGPGLMLEKALKDDA---EIVATIICGDN------YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGE 101 (349)
T ss_pred cCCCChHHHHHHHhcCCC---EEEEEEEECcc------hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHH
Confidence 477889999999997744 44 4444332 343333333222333335569999999986532
Q ss_pred -HHHHHHHcCCCeEEE
Q 039208 87 -ALQVSCSLNIPTYLF 101 (331)
Q Consensus 87 -~~~vA~~~giP~v~~ 101 (331)
+..+.+++|||.++-
T Consensus 102 v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 102 VAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHhhCCCEEEE
Confidence 123566899998863
No 270
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.30 E-value=41 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=24.0
Q ss_pred ccEE-EEcCcch-hHHHHHHHcCCCeEEEecccH
Q 039208 75 LKTL-IIDFFHK-VALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 75 ~d~v-I~D~~~~-~~~~vA~~~giP~v~~~~~~~ 106 (331)
||+| |.|+-.- =+..-|+++|||.|.+.-+.+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 8876 5777543 567789999999999875543
No 271
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=32.22 E-value=2.2e+02 Score=21.47 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh-------------hhHHHHHHHHHhhcCCCccEEEEcCc--
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL-------------NSPNLHKTLIIQSKTSNLKTLIIDFF-- 83 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~-------------~~~~l~~~l~~l~~~~~~d~vI~D~~-- 83 (331)
++-.=+.++++.|.+.| .++ +.|.. ... +++. ..+.+.+ +++..++|+||.-.-
T Consensus 10 ~~k~~~~~~~~~l~~~G--~~l-~aT~g-T~~---~l~~~gi~~~~v~~~~~~~~~i~~----~i~~~~id~vIn~~~~~ 78 (110)
T cd01424 10 RDKPEAVEIAKRLAELG--FKL-VATEG-TAK---YLQEAGIPVEVVNKVSEGRPNIVD----LIKNGEIQLVINTPSGK 78 (110)
T ss_pred CcHhHHHHHHHHHHHCC--CEE-EEchH-HHH---HHHHcCCeEEEEeecCCCchhHHH----HHHcCCeEEEEECCCCC
Confidence 45566889999999999 887 34432 111 1111 1122233 334568999998431
Q ss_pred -----chhHHHHHHHcCCCeEE
Q 039208 84 -----HKVALQVSCSLNIPTYL 100 (331)
Q Consensus 84 -----~~~~~~vA~~~giP~v~ 100 (331)
..+....|-++|||++.
T Consensus 79 ~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 79 RAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ccCccHHHHHHHHHHhCCCEEe
Confidence 35677899999999884
No 272
>PRK14099 glycogen synthase; Provisional
Probab=32.05 E-value=76 Score=31.39 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.4
Q ss_pred cccEEEEEcCCC------CCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 6 IIIRLFFNPSPG------SSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 6 ~~~~i~~~p~p~------~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
++|||+++++=. -|=-.-...|.++|+++| |+|.++++.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g--~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHG--VEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 458899887421 134456788999999999 9999999854
No 273
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=31.98 E-value=2e+02 Score=26.06 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=27.9
Q ss_pred cCHHHhhcCccccchhcCC--c-Eee-cccc-c----ch-hhhHHHHHhhhcc-ceeehh
Q 039208 246 APQVDVLSHDSVVAVRTGV--P-MVA-WPSN-G----DQ-MVNMAFLVEKIRD-PLTVAE 294 (331)
Q Consensus 246 ~PQ~~vL~H~~v~al~~GV--P-~l~-~P~~-~----DQ-~~na~~v~~~lGv-G~~l~~ 294 (331)
++-.+.+.|.. +++.|+ | +++ .|+. + +| -.|+.++.++.|+ |+++..
T Consensus 58 vtl~em~~h~~--~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEd 115 (264)
T PRK00311 58 VTLDDMIYHTK--AVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEG 115 (264)
T ss_pred cCHHHHHHHHH--HHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 35566667766 555555 4 444 5754 3 44 5677777774475 777754
No 274
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=31.83 E-value=4.3e+02 Score=24.96 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-h--------H------HHhhhHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-Q--------L------ALLNSPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p--------~------~~~~~~~l~~~l~~l~~~ 72 (331)
++|+++.-=..|+++- ..|.++|.+ + .++.=+..+...+.. + + +......++++.+. .
T Consensus 2 ~~i~i~aGE~SGD~~g-a~l~~~l~~-~--~~~~G~GG~~m~~~~~~~~~lsv~G~~evl~~~~~~~~~~~~~~~~---~ 74 (347)
T PRK14089 2 MKILVSALEPSANLHL-KELLKNLPK-D--YELIGIFDKSLGNPLYDSREFSIMGFVDVLPKLFFAKKAIKEMVEL---A 74 (347)
T ss_pred cEEEEEeccccHHHHH-HHHHHHHhc-C--CEEEEEechHHHHhcCChHHhhhhhHHHHHHHHHHHHHHHHHHHHH---h
Confidence 5788777767787664 467777766 4 555544433221110 1 1 11111222223332 2
Q ss_pred CCccEEE-EcC--cchhHHHHHHHc--CCCeEEEe
Q 039208 73 SNLKTLI-IDF--FHKVALQVSCSL--NIPTYLFY 102 (331)
Q Consensus 73 ~~~d~vI-~D~--~~~~~~~vA~~~--giP~v~~~ 102 (331)
.+||++| .|+ |....+.-+++. |||.+.+.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi 109 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYI 109 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899886 476 333566667777 69987764
No 275
>PRK10867 signal recognition particle protein; Provisional
Probab=31.47 E-value=1.5e+02 Score=28.99 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTL 50 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~ 50 (331)
-|+++-.+|.|=..-...||..|..+ | ..|.+++.+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccch
Confidence 36677788999999999999999999 9 9999998875553
No 276
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.45 E-value=1.4e+02 Score=29.17 Aligned_cols=72 Identities=14% Similarity=-0.110 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHhh---------hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHc
Q 039208 25 DELGKLILTHYPYFSVTIIISTFPTLRG-QLALLN---------SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSL 94 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~~---------~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~ 94 (331)
..+++.|.+.| .+|..+.+....... ..++.. .....++. +.++..+||++|... ....+|+++
T Consensus 339 ~~l~~~l~elG--mevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~-~~i~~~~pDl~ig~~---~~~~~a~k~ 412 (456)
T TIGR01283 339 WSLVSALQDLG--MEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELL-KLLLEYKADLLIAGG---KERYTALKL 412 (456)
T ss_pred HHHHHHHHHCC--CEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHH-HHHhhcCCCEEEEcc---chHHHHHhc
Confidence 57788899999 999887654222100 011100 01222222 222445899999863 457889999
Q ss_pred CCCeEEEe
Q 039208 95 NIPTYLFY 102 (331)
Q Consensus 95 giP~v~~~ 102 (331)
|||.+.+.
T Consensus 413 giP~i~~~ 420 (456)
T TIGR01283 413 GIPFCDIN 420 (456)
T ss_pred CCCEEEcc
Confidence 99988753
No 277
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=31.30 E-value=88 Score=27.91 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+-+.. .+...+.+. +.|..++
T Consensus 283 a~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~ 312 (359)
T cd03808 283 AMAMGRPVIATDVP----GCREAVIDG-VNGFLVP 312 (359)
T ss_pred HHHcCCCEEEecCC----CchhhhhcC-cceEEEC
Confidence 99999999996544 345556553 6777664
No 278
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.29 E-value=97 Score=25.09 Aligned_cols=76 Identities=13% Similarity=-0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----h---HHHhhhHHHHHHHHHhhcCCCccEEEE----cCcchhHHHH
Q 039208 22 LSMDELGKLILTHYPYFSVTIIISTFPTLRG----Q---LALLNSPNLHKTLIIQSKTSNLKTLII----DFFHKVALQV 90 (331)
Q Consensus 22 ~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----p---~~~~~~~~l~~~l~~l~~~~~~d~vI~----D~~~~~~~~v 90 (331)
--.+=|+..|.++| |+|++..++...... | |++.. ..+.+.++++.+. .+|.++. |....++...
T Consensus 14 p~alYl~~~Lk~~G--~~v~Va~npAA~kLl~vaDPe~~Y~~~~-~diD~~l~~i~e~-~~d~~~~FvHNDagvsY~~T~ 89 (139)
T PF09001_consen 14 PSALYLSYKLKKKG--FEVVVAGNPAALKLLEVADPEKHYLKEV-VDIDKCLAEIEEG-DFDLIFGFVHNDAGVSYAATY 89 (139)
T ss_dssp HHHHHHHHHHHCTT--EEEEEEE-HHHHHHHHHHSTT-SS-SEE-EEHHHHHHH--TT-S-SEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CeEEEecCHHHHhHhhhcCCccchhcce-eeHHHHHHHhhhC-CCCEEEEEEecchhHHHHHHH
Confidence 34567889999999 999998874111100 1 23222 3455566665433 7787763 4444456666
Q ss_pred HHHcCCCeEEE
Q 039208 91 SCSLNIPTYLF 101 (331)
Q Consensus 91 A~~~giP~v~~ 101 (331)
+...+...+.+
T Consensus 90 ~~i~~~~~~ai 100 (139)
T PF09001_consen 90 KAISNAKTIAI 100 (139)
T ss_dssp HHHH-SEEEEE
T ss_pred HHHcCCCeEEE
Confidence 66777776553
No 279
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=31.27 E-value=3.5e+02 Score=23.45 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=56.3
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----h-----HHHhhhHHHHHHHHHhhc---CC
Q 039208 8 IRLFFNPSP-GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----Q-----LALLNSPNLHKTLIIQSK---TS 73 (331)
Q Consensus 8 ~~i~~~p~p-~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p-----~~~~~~~~l~~~l~~l~~---~~ 73 (331)
.++-|+..| ..|-..-++.-++....+| -.|.+.++....... . .-....+.-.++++.+.. ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g--~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~ 81 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAG--MKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP 81 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcC--CeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCC
Confidence 344444444 5688899999999999999 999998875322110 0 000011122233333322 22
Q ss_pred CccEEEEcCcch-------hHHHHHHHcCCCeEEEe
Q 039208 74 NLKTLIIDFFHK-------VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 74 ~~d~vI~D~~~~-------~~~~vA~~~giP~v~~~ 102 (331)
..|||+.|-..+ -...+|.++|||.+...
T Consensus 82 ~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 82 PVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred CcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 378999996433 24578999999998753
No 280
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=31.25 E-value=56 Score=29.63 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeeccc
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPS 271 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~ 271 (331)
.++...+|+|+.+ +++..++. |+++|+|+|+-..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 253 DRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred CeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 5666668888763 45555553 9999999999654
No 281
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=31.25 E-value=1.4e+02 Score=28.43 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=14.6
Q ss_pred HHHHHHHcCCCeEEEeccc
Q 039208 87 ALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~~ 105 (331)
.+.+|+++|+|.++..++.
T Consensus 272 lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 272 EAVIAHELGIPFYALAPTS 290 (363)
T ss_pred HHHHHHHhCCCEEEEcccc
Confidence 3567888999998877554
No 282
>PRK07952 DNA replication protein DnaC; Validated
Probab=31.12 E-value=1.1e+02 Score=27.33 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=44.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhH-------HHHHHHHHhhcCCCccEEEEc
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSP-------NLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~-------~l~~~l~~l~~~~~~d~vI~D 81 (331)
.+++.-.+|.|=..-...++..|..+| +.|.+++... ++..... ...++++.+ ..+|+||.|
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~~~------l~~~l~~~~~~~~~~~~~~l~~l---~~~dlLvID 169 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITVAD------IMSAMKDTFSNSETSEEQLLNDL---SNVDLLVID 169 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEHHH------HHHHHHHHHhhccccHHHHHHHh---ccCCEEEEe
Confidence 477777889998888999999999999 9998886532 2221111 223444444 269999998
Q ss_pred Cc
Q 039208 82 FF 83 (331)
Q Consensus 82 ~~ 83 (331)
-+
T Consensus 170 Di 171 (244)
T PRK07952 170 EI 171 (244)
T ss_pred CC
Confidence 65
No 283
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=30.97 E-value=85 Score=29.12 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||+|+-.+.. ..+.-++|.++| |+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~--~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDN--FEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCC--CcEEEEEcC
Confidence 57888865543 356667888899 998766543
No 284
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=30.86 E-value=44 Score=30.47 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=14.4
Q ss_pred hHHHHHHHcCCCeEEEecc
Q 039208 86 VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~ 104 (331)
-.+.+|+++|+|.++...+
T Consensus 202 ~lA~~Ak~~~vPfyV~a~~ 220 (275)
T PRK08335 202 LLALACHDNGVPFYVAAET 220 (275)
T ss_pred HHHHHHHHcCCCEEEECcc
Confidence 3456788899999987654
No 285
>PRK07773 replicative DNA helicase; Validated
Probab=30.85 E-value=2.1e+02 Score=30.77 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~ 48 (331)
+++..-|+.|=....+.+|...+.+ | ..|.|++-+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlEms 257 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLEMS 257 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 5667788999999999999988754 7 88988887644
No 286
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.58 E-value=2.6e+02 Score=25.07 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcc---------------------------h----H-------HHhhhHHHHHH
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRG---------------------------Q----L-------ALLNSPNLHKT 65 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---------------------------p----~-------~~~~~~~l~~~ 65 (331)
....++.+.++| |+|.+=.+=.+.+.. | + +......++.+
T Consensus 66 ~~~~~~~A~~~G--~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~ 143 (250)
T COG2861 66 AREWAQKARNAG--HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKL 143 (250)
T ss_pred hHHHHHHHHhcC--CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHH
Confidence 456778888999 999876654433321 1 0 11123344455
Q ss_pred HHHhhcCCCccEEEEcCcch---hHHHHHHHcCCCeEE
Q 039208 66 LIIQSKTSNLKTLIIDFFHK---VALQVSCSLNIPTYL 100 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D~~~~---~~~~vA~~~giP~v~ 100 (331)
++++ .+-++.+.|.-.. -+..+|.+.|||++.
T Consensus 144 m~~L---k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 144 MEAL---KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHH---HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 5555 2567888887654 456789999999876
No 287
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=30.55 E-value=2e+02 Score=24.42 Aligned_cols=64 Identities=9% Similarity=-0.152 Sum_probs=35.3
Q ss_pred cEEEEEcCCCC-C-CHHHHHHHHHHHHhcCC-ceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGS-S-HLLSMDELGKLILTHYP-YFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~-g-H~~p~~~la~~L~~~G~-~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
++|++.-|.-+ | -.||...++++|..... .++|....- +. .+......+.+++++ .+||+||+=
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~~~~~i~~~~l--pv----~y~~~~~~~~~~~~~----~~pd~vlhl 67 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLILGGAEVVGLEL--PV----VFQKAVEVLPELIEE----HKPDLVIHV 67 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccccccCCcEEEEEEc--Cc----cHHHHHHHHHHHHHH----hCCCEEEEe
Confidence 35666655443 3 38999999999976520 155443321 11 133334444444443 378888753
No 288
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=30.52 E-value=1.6e+02 Score=28.39 Aligned_cols=84 Identities=10% Similarity=0.019 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCCCCcc--hHHHhh------hHHHH--HHHHHhhcCCCcc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFPTLRG--QLALLN------SPNLH--KTLIIQSKTSNLK 76 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~~~~~--p~~~~~------~~~l~--~~l~~l~~~~~~d 76 (331)
.+++++.-+ .| ...+++.|. +.| .+|+.+++.+..... ..+... ..... +..+. ++..+||
T Consensus 289 k~vai~~~~--~~---~~~la~~l~~elG--~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~-~~~~~pd 360 (415)
T cd01977 289 KKVCIWTGG--PK---LWHWTKVIEDELG--MQVVAMSSKFGHQEDFEKVIARGGEGTIYIDDPNELEFFEI-LEMLKPD 360 (415)
T ss_pred CEEEEECCC--ch---HHHHHHHHHHhcC--CEEEEEEEEeccHHHHHHHHHhcCCceEEEeCCCHHHHHHH-HHhcCCC
Confidence 356664333 33 478888997 799 999887653211100 001100 00001 11111 2345899
Q ss_pred EEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 77 TLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 77 ~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+||.... ...+|+++|||++.+.
T Consensus 361 liig~s~---~~~~a~~lgip~~~~~ 383 (415)
T cd01977 361 IILTGPR---VGELVKKLHVPYVNIH 383 (415)
T ss_pred EEEecCc---cchhhhhcCCCEEecc
Confidence 9998875 3479999999998763
No 289
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.42 E-value=1.9e+02 Score=26.34 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
.+++++-..+.|=..-+..|+..+..+| +.|.+++....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ 114 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHS 114 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCC
Confidence 4688888888998888999999999889 99999887533
No 290
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=30.21 E-value=86 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=22.6
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
|+++|+|+|+.- -..+...+.+. +.|..++.
T Consensus 112 a~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~ 142 (172)
T PF00534_consen 112 AMACGCPVIASD----IGGNNEIINDG-VNGFLFDP 142 (172)
T ss_dssp HHHTT-EEEEES----STHHHHHSGTT-TSEEEEST
T ss_pred ccccccceeecc----ccCCceeeccc-cceEEeCC
Confidence 999999999864 45666777774 67888864
No 291
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=30.18 E-value=1.9e+02 Score=31.26 Aligned_cols=84 Identities=7% Similarity=-0.112 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHh---------hhHHHHHHHHHhhcCCCccE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLALL---------NSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~---------~~~~l~~~l~~l~~~~~~d~ 77 (331)
.|++++.-+. + ...+++.|.+-| .+|..+.+....... ..+.. ....+.++. ++++..+||+
T Consensus 321 Krv~i~~g~~--~---~~~la~~l~elG--mevv~~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el~-~~i~~~~pDL 392 (917)
T PRK14477 321 KRVVLFTGGV--K---TWSMVNALRELG--VEVLAAGTQNSTLEDFARMKALMHKDAHIIEDTSTAGLL-RVMREKMPDL 392 (917)
T ss_pred CEEEEECCCc--h---HHHHHHHHHHCC--CEEEEEcCCCCCHHHHHHHHHhcCCCCEEEECCCHHHHH-HHHHhcCCCE
Confidence 4677775442 2 456788888999 999775543222100 00000 011223322 2234559999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+|.... ...+|+++|||++-..
T Consensus 393 lig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 393 IVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred EEecCc---hhhHHHHcCCCeEEcc
Confidence 998765 5678999999999644
No 292
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=30.17 E-value=64 Score=29.93 Aligned_cols=19 Identities=5% Similarity=0.023 Sum_probs=14.4
Q ss_pred hHHHHHHHcCCCeEEEecc
Q 039208 86 VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~ 104 (331)
-.+.+|+++++|.++...+
T Consensus 213 ~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 213 QIALAAHEARVPFMVAAET 231 (310)
T ss_pred HHHHHHHHhCCCEEEeccc
Confidence 3456788899999887655
No 293
>PRK05748 replicative DNA helicase; Provisional
Probab=29.94 E-value=2.7e+02 Score=27.17 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~~ 49 (331)
+++...|+.|=....+.++...+ ++| ..|.|++.+...
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~ 244 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGA 244 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCH
Confidence 56677889999999999999887 469 999998876443
No 294
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=29.76 E-value=68 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCCCHHH-HHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNPSPGSSHLLS-MDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p-~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
.||++--.+| +...- ...|.++|.++| |+|.++.++.
T Consensus 6 k~IllgVTGs-iaa~k~a~~lir~L~k~G--~~V~vv~T~a 43 (196)
T PRK08305 6 KRIGFGLTGS-HCTYDEVMPEIEKLVDEG--AEVTPIVSYT 43 (196)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHhCc--CEEEEEECHh
Confidence 4677766665 44455 699999999999 9999988753
No 295
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.29 E-value=1.1e+02 Score=26.54 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEecc
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~ 104 (331)
..+.+||+|--...+..-|++.|||++.+..-
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 36889999998888999999999999887543
No 296
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=29.12 E-value=3.4e+02 Score=22.85 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=48.4
Q ss_pred cEEE-EEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh
Q 039208 8 IRLF-FNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV 86 (331)
Q Consensus 8 ~~i~-~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~ 86 (331)
|+|+ +-|+-+-||-.....|++.+ - |+++++|-+. ....--++...-.+. +.......+|+|++..+..-
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~---~--~~~~lltLP~-r~w~WRmRg~AL~~a---~~~~~~~~~dll~aTsmldL 71 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS---E--HEWTLLTLPA-RKWHWRMRGAALYFA---QQIPLSHSYDLLFATSMLDL 71 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc---c--CCEEEEEcCC-CccccccCCCHHHHh---hccccccCCCEEEeeccccH
Confidence 4655 45677889999888888888 3 7888887531 110000111111122 23333457899998877653
Q ss_pred HHH--HHHHc-CCCeEEEe
Q 039208 87 ALQ--VSCSL-NIPTYLFY 102 (331)
Q Consensus 87 ~~~--vA~~~-giP~v~~~ 102 (331)
+.. +...+ ++|.+.++
T Consensus 72 a~l~gL~p~l~~~p~ilYF 90 (168)
T PF12038_consen 72 ATLRGLRPDLANVPKILYF 90 (168)
T ss_pred HHHHhhccCCCCCCEEEEE
Confidence 333 33233 57777654
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.86 E-value=2.1e+02 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
.-++++-.+|.|=..-...||..|.++| ++|.+++.+.+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCC
Confidence 3477888899999999999999999999 999999876554
No 298
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.83 E-value=1e+02 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCCCHHHH------------HHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPGSSHLLSM------------DELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~------------~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..||++..-|.+=.+.|. ..||+++..+| ++||+++.+
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G--A~VtlI~Gp 305 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG--AEVTLISGP 305 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC--CcEEEEeCC
Confidence 347777777776666665 47899999999 999999864
No 299
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=28.73 E-value=1.9e+02 Score=27.26 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=14.3
Q ss_pred hHHHHHHHcCCCeEEEecc
Q 039208 86 VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~ 104 (331)
-.+.+|+++|+|.++...+
T Consensus 250 ~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 250 QLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred HHHHHHHHhCCCEEEeccc
Confidence 3456788899999887655
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=28.61 E-value=2.2e+02 Score=26.74 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
-++|+-.+|.|=..-...||..|.++| ++|.+++...+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g--~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNG--FSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcC
Confidence 477888999999999999999999999 99999876533
No 301
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.53 E-value=70 Score=29.94 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=11.5
Q ss_pred chhcCCcEeeccc
Q 039208 259 AVRTGVPMVAWPS 271 (331)
Q Consensus 259 al~~GVP~l~~P~ 271 (331)
++++|+|+|+.|-
T Consensus 276 a~a~G~PvI~~~~ 288 (380)
T PRK00025 276 LALLKVPMVVGYK 288 (380)
T ss_pred HHHhCCCEEEEEc
Confidence 9999999998853
No 302
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.42 E-value=2.1e+02 Score=26.01 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~ 49 (331)
++|+-..|.|=..-...||..+..+ | +.|.+++.+.+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~--~~V~li~~D~~r 236 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGN--KKVALITTDTYR 236 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCC--CeEEEEECCccc
Confidence 5566667889999999999999876 6 899999987543
No 303
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.36 E-value=3.8e+02 Score=23.00 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=43.3
Q ss_pred EEcCCCCCCHHHH-HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh----
Q 039208 12 FNPSPGSSHLLSM-DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV---- 86 (331)
Q Consensus 12 ~~p~p~~gH~~p~-~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~---- 86 (331)
++|......+..+ ..+.+++.++| .++++..+.. . .... .+.++.+. ..++|.||.-.....
T Consensus 5 v~~~~~~~~~~~~~~~i~~~~~~~g--~~v~~~~~~~-~-----~~~~----~~~~~~~~-~~~~dgii~~~~~~~~~~~ 71 (268)
T cd06323 5 SVSTLNNPFFVTLKDGAQKEAKELG--YELTVLDAQN-D-----AAKQ----LNDIEDLI-TRGVDAIIINPTDSDAVVP 71 (268)
T ss_pred ecccccCHHHHHHHHHHHHHHHHcC--ceEEecCCCC-C-----HHHH----HHHHHHHH-HcCCCEEEEcCCChHHHHH
Confidence 4444333334444 36677888899 9988765421 1 1111 23333332 247898776433221
Q ss_pred HHHHHHHcCCCeEEEec
Q 039208 87 ALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~ 103 (331)
....+++.|+|.+.+..
T Consensus 72 ~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 72 AVKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHCCCcEEEEcc
Confidence 23445677999998854
No 304
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.36 E-value=2.5e+02 Score=27.59 Aligned_cols=87 Identities=8% Similarity=-0.101 Sum_probs=48.5
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHh--hcCCCccEEEEcCc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQ--SKTSNLKTLIIDFF 83 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l--~~~~~~d~vI~D~~ 83 (331)
..++|+++-.+..| +..++.|.++| ++|++.=.................++-..... .....+|+||..+.
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG 78 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLG--AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG 78 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCC--CeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence 37789999998888 89999999999 99998643211110000000011110000000 01235788888875
Q ss_pred chh---HHHHHHHcCCCeE
Q 039208 84 HKV---ALQVSCSLNIPTY 99 (331)
Q Consensus 84 ~~~---~~~vA~~~giP~v 99 (331)
.++ ....|+++|+|.+
T Consensus 79 i~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEII 97 (448)
T ss_pred CCCCCHHHHHHHHcCCcEE
Confidence 543 3455666666655
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=28.36 E-value=3.4e+02 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=34.0
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
...|.+.-.||.|=-.-...|+..|.++| ++|.+++.+.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g--~~v~vi~~Dp 94 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQG--HKVAVLAVDP 94 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 34588888999999999999999999999 9999998753
No 306
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=28.32 E-value=2.9e+02 Score=27.40 Aligned_cols=38 Identities=5% Similarity=0.016 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
-+++.-.|+.|-..-..+++...+.+| .+|.|++.+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~ 312 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEES 312 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCC
Confidence 356677788999999999999999999 99999987644
No 307
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.30 E-value=2.1e+02 Score=27.94 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL 50 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~ 50 (331)
.-|+++-.=+.|-..-...||+.|..+| +.|-++..+.++.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~Rp 141 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRP 141 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCCh
Confidence 3477777778899999999999999999 9999998876664
No 308
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.26 E-value=1.1e+02 Score=22.00 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTII 43 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~ 43 (331)
-++++.-+...|..-+.++|+.|+++| ..|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G--~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQG--YAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCC--CEEEEE
Confidence 377777777889999999999999999 887644
No 309
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.05 E-value=86 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHH
Q 039208 61 NLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSAS 107 (331)
Q Consensus 61 ~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~ 107 (331)
.++..+.++ +...+|+||.+.. ....|+++|+|++.+.++.-+
T Consensus 113 e~~~~i~~~-~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 113 EIEAAIKQA-KAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHH-HHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHH-HHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 445555554 3457999999965 578999999999888765443
No 310
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.82 E-value=2.5e+02 Score=24.90 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=28.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 14 PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 14 p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+-+|.|=..-.+.||.+|+++| -.|+++=.+...
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~ 42 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARG--ARVALIDADPNQ 42 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 3568899999999999999999 999998765433
No 311
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=27.78 E-value=99 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=21.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+. |...+...+.+ .|..+...
T Consensus 282 a~a~G~PvI~~----~~~~~~e~i~~-~g~~~~~~ 311 (360)
T cd04951 282 AMACELPVVAT----DAGGVREVVGD-SGLIVPIS 311 (360)
T ss_pred HHHcCCCEEEe----cCCChhhEecC-CceEeCCC
Confidence 99999999974 55566666666 46665543
No 312
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=27.62 E-value=3.5e+02 Score=30.40 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=53.0
Q ss_pred cEEEEEcCCC---CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhh-cCCCccEEEEcCc
Q 039208 8 IRLFFNPSPG---SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQS-KTSNLKTLIIDFF 83 (331)
Q Consensus 8 ~~i~~~p~p~---~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~-~~~~~d~vI~D~~ 83 (331)
+.|.++-+-+ .|+..+.-.|.++|-++| .+|.-+....... +...+.++++. ...++|+||.-..
T Consensus 202 p~vgilfyr~~~~~~~~~~idali~~Le~~G--~nvipvf~~~~k~---------~~~~~~~~~~~~~~~~vd~ii~~~~ 270 (1244)
T PRK05989 202 PTVAILFYRAHLQAGNTAPIDALIAALEARG--LNPLPVFVSSLKD---------AESPEVLEDLFNADALVDAVLNATG 270 (1244)
T ss_pred CeEEEEEecchhccCCcHHHHHHHHHHHHCC--CeEEEEEecCccc---------cchHHHHHHHhcCCCCccEEEEcCC
Confidence 4444444433 378999999999999999 9887443221110 11233333333 4567999997654
Q ss_pred ch-----hHHHHHHHcCCCeEEEecc
Q 039208 84 HK-----VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 84 ~~-----~~~~vA~~~giP~v~~~~~ 104 (331)
+. .+..+-+++|||++...++
T Consensus 271 f~l~~~~~~~~~l~~lnvPVlq~i~~ 296 (1244)
T PRK05989 271 FALAAAAWDVEVLAALDVPVLQVICS 296 (1244)
T ss_pred ccccCcchhhHHHHHCCCCEEEEeeC
Confidence 43 1344568899999886544
No 313
>PRK10125 putative glycosyl transferase; Provisional
Probab=27.52 E-value=3.4e+02 Score=26.01 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=28.4
Q ss_pred cEEEEEc--CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNP--SPGSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p--~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+.+. ....|-=.-++.|++.|.++| |+|.++....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G--~~~~i~~~~~ 40 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQG--LASHFVYGYG 40 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcC--CeEEEEEecC
Confidence 4666554 334566777899999999999 9999887643
No 314
>PLN02939 transferase, transferring glycosyl groups
Probab=27.48 E-value=1.1e+02 Score=32.94 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=31.2
Q ss_pred CcccEEEEEcCC-----CCC-CHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 5 WIIIRLFFNPSP-----GSS-HLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 5 ~~~~~i~~~p~p-----~~g-H~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
..+|||+++++= -.| =-.-...|.++|++.| |+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G--hdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG--HLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC--CeEEEEeCCCc
Confidence 456899988632 123 3455678999999999 99999998653
No 315
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.88 E-value=2e+02 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCeEEEecccH
Q 039208 87 ALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~~~ 106 (331)
.+.+|+++|||.++..+.+.
T Consensus 254 lAvlAk~~gIPFyVaAP~sT 273 (346)
T COG0182 254 LAVLAKHHGIPFYVAAPLST 273 (346)
T ss_pred HHHHHHHcCCCeEEEcccCc
Confidence 45688899999988776643
No 316
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.85 E-value=1.8e+02 Score=28.43 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLIL-THYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~-~~G~~h~Vt~~~~~~~~ 49 (331)
++++..+|.|=..-...||..|. ++| .+|.++..+.+.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R 140 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYR 140 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccc
Confidence 66777889999999999999987 589 999999887554
No 317
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=26.79 E-value=2.1e+02 Score=27.03 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHH------------hhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHH
Q 039208 23 SMDELGKLILTHYPYFSVTIIISTFPTLRGQLAL------------LNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQV 90 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~------------~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~v 90 (331)
-...+++.|.+.| .+|..+.+...... ... .......++.+. ++..+||++|.+.. ....
T Consensus 290 ~~~~~~~~l~e~G--~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~pdl~ig~~~---~~~~ 361 (399)
T cd00316 290 LLLALARFLLELG--MEVVAAGTTFGHKA--DYERREELLGEGTEVVDDGDLEELEEL-IRELKPDLIIGGSK---GRYI 361 (399)
T ss_pred HHHHHHHHHHHCC--CEEEEEEeCCCCHH--HHHHHHHhcCCCCEEEeCCCHHHHHHH-HhhcCCCEEEECCc---HHHH
Confidence 3445568888899 99887776433221 000 001122233222 24458999999864 5788
Q ss_pred HHHcCCCeEEEe
Q 039208 91 SCSLNIPTYLFY 102 (331)
Q Consensus 91 A~~~giP~v~~~ 102 (331)
|+++|+|++.+.
T Consensus 362 ~~~~~ip~~~~~ 373 (399)
T cd00316 362 AKKLGIPLVRIG 373 (399)
T ss_pred HHHhCCCEEEcC
Confidence 889999987654
No 318
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=26.76 E-value=90 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.5
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+.+..+.+. .+.+. +.|..++
T Consensus 319 a~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~ 348 (394)
T cd03794 319 YMAAGKPVLASVDGESAE----LVEEA-GAGLVVP 348 (394)
T ss_pred HHHCCCcEEEecCCCchh----hhccC-CcceEeC
Confidence 899999999998765443 33332 5566554
No 319
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=26.72 E-value=2.4e+02 Score=26.53 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=14.7
Q ss_pred hHHHHHHHcCCCeEEEeccc
Q 039208 86 VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~~ 105 (331)
-.+.+|+++|+|.++...+.
T Consensus 250 ~lA~~Ak~~~vPfyV~a~~~ 269 (331)
T TIGR00512 250 QLAVLAKHHGVPFYVAAPTS 269 (331)
T ss_pred HHHHHHHHhCCCEEEecccc
Confidence 34567888999998876553
No 320
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.59 E-value=2.9e+02 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
++....++-.|-....-++..|.++| ++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G--~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNG--FEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCC--CEEEEcCC
Confidence 46666778899999999999999999 99998754
No 321
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=26.01 E-value=1.6e+02 Score=24.94 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=29.5
Q ss_pred ccCHHHhhcCcccc--------------------chhcC-CcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 245 WAPQVDVLSHDSVV--------------------AVRTG-VPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 245 W~PQ~~vL~H~~v~--------------------al~~G-VP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
++-|..||+|.+++ .+-+- .|.+..|++ ..|... +|+|..|-.
T Consensus 67 YaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w----~vagfa---lGaGTALlg 130 (217)
T KOG4061|consen 67 YAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTPLW----NVAGFA---LGAGTALLG 130 (217)
T ss_pred hhchhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhhhhHH----HHHHHH---hccchhhhC
Confidence 47899999999998 44444 467777776 233333 788887743
No 322
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.00 E-value=82 Score=26.73 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.||++.-.+|.|=+ -...+.+.|.++| ++|.++.++
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g--~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRG--YQVTVLMTK 37 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCC--CEEEEEECh
Confidence 46777777665544 4799999999999 999988875
No 323
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.99 E-value=4.3e+02 Score=22.77 Aligned_cols=66 Identities=3% Similarity=-0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc-h-hHHHHHHHcCCCeEEEe
Q 039208 25 DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH-K-VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~-~-~~~~vA~~~giP~v~~~ 102 (331)
..+.+.+.++| .++.+...... .... +.+..++.+.++|.||..... . -....+.+.|||.|.+-
T Consensus 24 ~~~~~~~~~~g--~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 24 RGISAVANENG--YDISLATGKNE-------EELL----EEVKKMIQQKRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHHHHHCC--CEEEEecCCCc-------HHHH----HHHHHHHHHcCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 45667788899 89877544210 1111 222222234479988775422 1 22345667899999885
Q ss_pred c
Q 039208 103 A 103 (331)
Q Consensus 103 ~ 103 (331)
.
T Consensus 91 ~ 91 (270)
T cd06294 91 K 91 (270)
T ss_pred C
Confidence 4
No 324
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=25.97 E-value=81 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
||++--.+|.|=+.-...+.++|.+.| ++|+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g--~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEG--AEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCc--CEEEEEEch
Confidence 566666666665555569999999999 999998875
No 325
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.95 E-value=4.2e+02 Score=22.70 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=43.9
Q ss_pred EEcCCCCCCHHHH-HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--hHH
Q 039208 12 FNPSPGSSHLLSM-DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--VAL 88 (331)
Q Consensus 12 ~~p~p~~gH~~p~-~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~~~ 88 (331)
++|......+..+ ..+-+++.++| .++++..+.. . .......++.+. ..++|.||...... ...
T Consensus 5 i~~~~~~~~~~~~~~~i~~~a~~~g--~~~~~~~~~~-~---------~~~~~~~~~~l~-~~~~dgiii~~~~~~~~~l 71 (267)
T cd06283 5 IVADITNPFSSLVLKGIEDVCRAHG--YQVLVCNSDN-D---------PEKEKEYLESLL-AYQVDGLIVNPTGNNKELY 71 (267)
T ss_pred EecCCccccHHHHHHHHHHHHHHcC--CEEEEEcCCC-C---------HHHHHHHHHHHH-HcCcCEEEEeCCCCChHHH
Confidence 3343333344444 46677788899 8887765431 1 111123333332 34789888754332 223
Q ss_pred HHHHHcCCCeEEEec
Q 039208 89 QVSCSLNIPTYLFYA 103 (331)
Q Consensus 89 ~vA~~~giP~v~~~~ 103 (331)
..+.+.|+|.|.+..
T Consensus 72 ~~~~~~~ipvV~~~~ 86 (267)
T cd06283 72 QRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHhcCCCCEEEEcC
Confidence 445667999999854
No 326
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=25.95 E-value=2.2e+02 Score=27.33 Aligned_cols=84 Identities=11% Similarity=-0.098 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHh--cCCceEEE---EEeCCCCCCcc-----------h-----------HHHhhhH-HHHHHHHH
Q 039208 17 GSSHLLSMDELGKLILT--HYPYFSVT---IIISTFPTLRG-----------Q-----------LALLNSP-NLHKTLII 68 (331)
Q Consensus 17 ~~gH~~p~~~la~~L~~--~G~~h~Vt---~~~~~~~~~~~-----------p-----------~~~~~~~-~l~~~l~~ 68 (331)
|+|-=.--+.++++|.+ .| ++|. ++.+....+.. | .++.... .+...++.
T Consensus 6 ghged~~a~ai~~~l~~~~~~--~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~ 83 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPD--LNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQ 83 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCC--CCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHH
Confidence 44444556789999998 58 9999 88765332211 1 1111111 11111111
Q ss_pred h--hcCC--CccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 69 Q--SKTS--NLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 69 l--~~~~--~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
+ ++.. ++|+||.---+. ...+|.-.|+|++.+.|
T Consensus 84 ~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 84 WRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 1 1233 889887654443 56667677999998544
No 327
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.69 E-value=2.1e+02 Score=26.71 Aligned_cols=88 Identities=7% Similarity=0.047 Sum_probs=49.7
Q ss_pred EEEEEcCCCCC--C--HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHh---------h-hHHHHHHHHHhhc
Q 039208 9 RLFFNPSPGSS--H--LLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALL---------N-SPNLHKTLIIQSK 71 (331)
Q Consensus 9 ~i~~~p~p~~g--H--~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~---------~-~~~l~~~l~~l~~ 71 (331)
-|++.|..+.. . .-=+.+|++.|.++| .+|.++..+.-.+.. .+... + .-.+.++..-+
T Consensus 185 ~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~--~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali-- 260 (352)
T PRK10422 185 YVVIQPTARQIFKCWDNDKFSAVIDALQARG--YEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI-- 260 (352)
T ss_pred eEEEecCCCccccCCCHHHHHHHHHHHHHCC--CeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH--
Confidence 36666654321 1 224788999998889 998877543211110 01100 0 01233333222
Q ss_pred CCCccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 72 TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 72 ~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.+.|++|+-- +....+|..+|+|.+.++.
T Consensus 261 -~~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 261 -DHAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred -HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 2577888642 3467899999999998874
No 328
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.52 E-value=2.3e+02 Score=27.68 Aligned_cols=71 Identities=10% Similarity=-0.090 Sum_probs=41.9
Q ss_pred HHHH-HHHhcCCceEEEEEeCCCCCCcc--hHHHhhh--------HHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHc
Q 039208 26 ELGK-LILTHYPYFSVTIIISTFPTLRG--QLALLNS--------PNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSL 94 (331)
Q Consensus 26 ~la~-~L~~~G~~h~Vt~~~~~~~~~~~--p~~~~~~--------~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~ 94 (331)
.+++ .|.+.| .+|..+.+....... +.++... ....++. +.++..++|++|.... +..+|+++
T Consensus 331 ~~~~~ll~elG--m~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~-~~i~~~~pdllig~s~---~~~~A~~l 404 (443)
T TIGR01862 331 HWIGSAEEDLG--MEVVAVGYEFAHEDDYEKTMKRMGEGTLLIDDPNELEFE-EILEKLKPDIIFSGIK---EKFVAQKL 404 (443)
T ss_pred HHHHHHHHHCC--CEEEEeccccccHHHHHHHHHhCCCceEEecCCCHHHHH-HHHHhcCCCEEEEcCc---chhhhhhc
Confidence 5777 677899 999888654322110 1111110 0111222 2223458999998764 67899999
Q ss_pred CCCeEEEe
Q 039208 95 NIPTYLFY 102 (331)
Q Consensus 95 giP~v~~~ 102 (331)
|||++.+.
T Consensus 405 gip~~~~~ 412 (443)
T TIGR01862 405 GVPYRQMH 412 (443)
T ss_pred CCCeEecC
Confidence 99998753
No 329
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.40 E-value=2.1e+02 Score=25.61 Aligned_cols=36 Identities=6% Similarity=0.068 Sum_probs=28.4
Q ss_pred hcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEeccc
Q 039208 70 SKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 70 ~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~~ 105 (331)
++..++.||+++.... .+-.+|++.|++.+.+.+.+
T Consensus 213 ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 213 AKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 3567899999998665 56689999999988876554
No 330
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=25.38 E-value=2.2e+02 Score=26.32 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCeEEEecc
Q 039208 87 ALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 87 ~~~vA~~~giP~v~~~~~ 104 (331)
.+.+|+++|+|.++...+
T Consensus 223 lA~~Ak~~~vPv~V~a~s 240 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPL 240 (303)
T ss_pred HHHHHHHhCCCEEEeccc
Confidence 456788899999987655
No 331
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=25.37 E-value=88 Score=31.28 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=23.9
Q ss_pred hcCCCccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 70 SKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 70 ~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
++..+||+||.+. +...+|+++|||++.++
T Consensus 370 I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 370 IARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3445899999987 46677999999997765
No 332
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=25.36 E-value=2.8e+02 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHH-Hhhh-HHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLA-LLNS-PNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~-~~~~-~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
|+|+++-++++-| .||+.|++.+....| ++.+....... ..+ .... ... +-+.++++...+|++|.-+=.
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~-~~apgN~G~a~~~~~~~~~~~~~~-~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYV-YVAPGNPGTALEAYLVNIEIDTDH-EALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEE-EEeCCCCccchhhhhccCccccCH-HHHHHHHHHcCCCEEEECCcH
Confidence 6899999999999 578999887622232 33332221110 011 0001 111 223344456688888877654
Q ss_pred hhHHHHHH---HcCCCe
Q 039208 85 KVALQVSC---SLNIPT 98 (331)
Q Consensus 85 ~~~~~vA~---~~giP~ 98 (331)
+-...++. +.|||+
T Consensus 74 pL~~GvvD~l~~~Gi~v 90 (428)
T COG0151 74 PLVAGVVDALRAAGIPV 90 (428)
T ss_pred HHhhhhHHHHHHCCCce
Confidence 43343333 335553
No 333
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=25.32 E-value=3.1e+02 Score=24.51 Aligned_cols=76 Identities=9% Similarity=0.050 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-------------
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK------------- 85 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~------------- 85 (331)
-|+.|--..|++..++- .++-.-|... -+++.....+...++ +.+||+|||..-.-
T Consensus 204 r~iyp~D~~Ak~~Ir~k--VEl~~gTedd-----eYLrkl~r~l~~sl~----ef~Pd~VvYNAGTDiLeGDpLG~L~IS 272 (324)
T KOG1344|consen 204 RFIYPRDHVAKESIRCK--VELRNGTEDD-----EYLRKLKRCLMQSLA----EFRPDMVVYNAGTDILEGDPLGNLAIS 272 (324)
T ss_pred hhccchhHHHHHHhhhe--eeeecCCCch-----HHHHHHHHHHHHHHH----hhCCcEEEEeCCCccccCCCCCCeeec
Confidence 46777777788777776 6665544321 144444444444333 45899999864220
Q ss_pred ---------hHHHHHHHcCCCeEEEeccc
Q 039208 86 ---------VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ---------~~~~vA~~~giP~v~~~~~~ 105 (331)
-....++.+|||.+.+.+.+
T Consensus 273 p~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 273 PEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred ccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 12456788899988876554
No 334
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.12 E-value=4.1e+02 Score=25.26 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=25.0
Q ss_pred ccEEEEEc-CCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 7 IIRLFFNP-SPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 7 ~~~i~~~p-~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
..+|+++- .+..|. .+|+.|.++| |+|+++..
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G--~~V~~~d~ 130 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSG--YQVRILEQ 130 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCC--CeEEEeCC
Confidence 35788876 666664 6899999999 99998864
No 335
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=25.05 E-value=2.2e+02 Score=26.65 Aligned_cols=74 Identities=7% Similarity=-0.113 Sum_probs=48.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------h---HHH---hhhHHHHHHHHHhhcCCCcc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------Q---LAL---LNSPNLHKTLIIQSKTSNLK 76 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------p---~~~---~~~~~l~~~l~~l~~~~~~d 76 (331)
+.++-.|+.|=..-.++++...+.+| ..+.|+.++...+.. . ++- .....+...++.+.++..++
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g--~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLG--GTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 44666788899999999999999999 899998876533210 0 000 01112233344455566899
Q ss_pred EEEEcCcch
Q 039208 77 TLIIDFFHK 85 (331)
Q Consensus 77 ~vI~D~~~~ 85 (331)
+||.|+...
T Consensus 136 lIVIDSvaa 144 (325)
T cd00983 136 LIVVDSVAA 144 (325)
T ss_pred EEEEcchHh
Confidence 999998643
No 336
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.99 E-value=2.2e+02 Score=26.51 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=50.0
Q ss_pred EEEEEcCCCCC---CHH--HHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHh------------h-hHHHHHHHHHh
Q 039208 9 RLFFNPSPGSS---HLL--SMDELGKLILTHYPYFSVTIIISTFPTLRG-QLALL------------N-SPNLHKTLIIQ 69 (331)
Q Consensus 9 ~i~~~p~p~~g---H~~--p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~------------~-~~~l~~~l~~l 69 (331)
-|++.|..+.| ++. =+.+|++.|.++| ++|.++..+.-.... ..... . .-.|.++..-+
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~--~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEG--YQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCC--CeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 46677744222 222 3789999998888 998877653211100 01100 0 01233333222
Q ss_pred hcCCCccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 70 SKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 70 ~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.+.|++|+-- +....+|..+|+|.+.++.
T Consensus 260 ---~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 260 ---AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ---HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 2567887542 3467899999999998874
No 337
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.99 E-value=1.1e+02 Score=27.19 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|.|.++.-+|.|-..-...||..|+++| ++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G--~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRG--KKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCC--CcEEEEecC
Confidence 4577788889999999999999999999 999877543
No 338
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=24.98 E-value=4.1e+02 Score=22.17 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceE--EEEEeCCCCCCcc---------h--HHHh--h--hHHHHHHHHHhh
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFS--VTIIISTFPTLRG---------Q--LALL--N--SPNLHKTLIIQS 70 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~--Vt~~~~~~~~~~~---------p--~~~~--~--~~~l~~~l~~l~ 70 (331)
|||+|+-+++. ..+..+-.+|.+++ ++ +..+.+....... + .+.. . .....+.+.+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~--~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARG--HNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELL 75 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTS--SEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCC--CCceEEEEeccccccccccccccCCCCEEeccccCCCchHhhhhHHHHHH
Confidence 68888866443 55667778899999 76 5555544333221 1 1111 0 111122222333
Q ss_pred cCCCccEEEEcCcch-hHHHHHHHcCCCeEEEecc
Q 039208 71 KTSNLKTLIIDFFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 71 ~~~~~d~vI~D~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
++..+|++|+-.+.. -...+-+.....++-++++
T Consensus 76 ~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 76 ESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred HhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 456899998765532 3344556666677777766
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.96 E-value=2.9e+02 Score=22.61 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+++.-.||.|=..-..+++...+..| ..|.|++.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCH
Confidence 45666788899999999999999999 999999876443
No 340
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=24.90 E-value=56 Score=30.23 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=14.5
Q ss_pred hHHHHHHHcCCCeEEEecc
Q 039208 86 VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~ 104 (331)
-.+.+|+++++|.++...+
T Consensus 208 ~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 208 QLALAAREARVPFMVAAET 226 (301)
T ss_pred HHHHHHHHhCCCEEEEccc
Confidence 4456788899999987655
No 341
>PLN02501 digalactosyldiacylglycerol synthase
Probab=24.86 E-value=5.1e+02 Score=27.38 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=27.8
Q ss_pred ccEEEEEcCCC----CC-CHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPG----SS-HLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~----~g-H~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+-||.+++..+ .| -+||+..-| -|++.|. ++||++.+=
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAa-yLa~~~~-~~VtlviPW 364 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAA-YLAKSAK-QNVTLLVPW 364 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHH-HhcccCC-ceEEEEEec
Confidence 35788888765 24 599999977 4566632 999999863
No 342
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=24.49 E-value=1.9e+02 Score=28.37 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh------hhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL------NSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~------~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
.++++..- -.-...|++.|.+.| .+|..+.+.... +.++. ....+.+ +++.++ ++|++|.+
T Consensus 312 krvai~~~-----~~~~~~la~~L~elG--~~v~~~~~~~~~---~~~~~~~~~~i~~~D~~~-le~~~~--~~dliig~ 378 (455)
T PRK14476 312 KRVAIAAE-----PDLLLALGSFLAEMG--AEIVAAVTTTKS---PALEDLPAEEVLIGDLED-LEELAE--GADLLITN 378 (455)
T ss_pred CEEEEEeC-----HHHHHHHHHHHHHCC--CEEEEEEeCCCc---HHHHhCCcCcEEeCCHHH-HHHhcc--CCCEEEEC
Confidence 45655532 235667889999999 999887764321 21111 1112232 233333 79999998
Q ss_pred CcchhHHHHHHHcCCCeEEE
Q 039208 82 FFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 82 ~~~~~~~~vA~~~giP~v~~ 101 (331)
.. ...+|+++|||++.+
T Consensus 379 s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 379 SH---GRQAAERLGIPLLRV 395 (455)
T ss_pred ch---hHHHHHHcCCCEEEe
Confidence 74 678999999999865
No 343
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.42 E-value=5e+02 Score=22.98 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=41.0
Q ss_pred EcCCCCCCHHHHH-HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc----hhH
Q 039208 13 NPSPGSSHLLSMD-ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH----KVA 87 (331)
Q Consensus 13 ~p~p~~gH~~p~~-~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~----~~~ 87 (331)
+|.....++..+. .+.+++.++| .+++++...... .......++.++ ..++|.||.-... .-.
T Consensus 6 ~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~-----~~~~~~~l~~~~-----~~~~dgiii~~~~~~~~~~~ 73 (294)
T cd06316 6 MHTSGSDWSNAQVRGAKDEFAKLG--IEVVATTDAQFD-----PAKQVADIETTI-----SQKPDIIISIPVDPVSTAAA 73 (294)
T ss_pred ecCCCChHHHHHHHHHHHHHHHcC--CEEEEecCCCCC-----HHHHHHHHHHHH-----HhCCCEEEEcCCCchhhhHH
Confidence 3333333444444 4667788899 888754321111 111122223322 2378988764422 122
Q ss_pred HHHHHHcCCCeEEEec
Q 039208 88 LQVSCSLNIPTYLFYA 103 (331)
Q Consensus 88 ~~vA~~~giP~v~~~~ 103 (331)
...+.+.|||.|.+..
T Consensus 74 i~~~~~~~iPvV~~~~ 89 (294)
T cd06316 74 YKKVAEAGIKLVFMDN 89 (294)
T ss_pred HHHHHHcCCcEEEecC
Confidence 3456678999998753
No 344
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=24.31 E-value=2.6e+02 Score=25.42 Aligned_cols=72 Identities=10% Similarity=-0.055 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhh-cCCCccEEEE--cC---cchhHHHHHHHc
Q 039208 21 LLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQS-KTSNLKTLII--DF---FHKVALQVSCSL 94 (331)
Q Consensus 21 ~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~-~~~~~d~vI~--D~---~~~~~~~vA~~~ 94 (331)
+.-...+.++|.++| |+|.++....... . ....+.+.+.... ...++|+|+. +. .......+.+.+
T Consensus 17 ~~s~~~i~~al~~~g--~~v~~i~~~~~~~---~---~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~ 88 (315)
T TIGR01205 17 LVSAAAVLKALRDLG--YDVYPVDIDKMGS---W---TYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM 88 (315)
T ss_pred HHHHHHHHHHHhhcC--CEEEEEeecCCcc---c---cccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc
Confidence 557788899999999 9999886542110 1 0011122221111 1247899886 21 123556788889
Q ss_pred CCCeEE
Q 039208 95 NIPTYL 100 (331)
Q Consensus 95 giP~v~ 100 (331)
|+|++.
T Consensus 89 gip~~g 94 (315)
T TIGR01205 89 GIPYTG 94 (315)
T ss_pred CCCccC
Confidence 999765
No 345
>PRK13558 bacterio-opsin activator; Provisional
Probab=24.04 E-value=3.4e+02 Score=27.71 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=46.7
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+.+...++|+++-- |-.-...+.+.|...| ++|..+.. . .+.+..+ ...++|+||.
T Consensus 1 ~~~~~~~~~ILivdd----~~~~~~~l~~~l~~~~--~~v~~~~~---------~-------~~al~~~-~~~~~Dlvl~ 57 (665)
T PRK13558 1 EAAVAPTRGVLFVGD----DPEAGPVDCDLDEDGR--LDVTQIRD---------F-------VAARDRV-EAGEIDCVVA 57 (665)
T ss_pred CCCCCcceeEEEEcc----CcchHHHHHHHhhccC--cceEeeCC---------H-------HHHHHHh-hccCCCEEEE
Confidence 677777788888763 2222334566677788 87765432 1 2222222 2346899999
Q ss_pred cCcch--hHHHHHHHc-----CCCeEEEecc
Q 039208 81 DFFHK--VALQVSCSL-----NIPTYLFYAS 104 (331)
Q Consensus 81 D~~~~--~~~~vA~~~-----giP~v~~~~~ 104 (331)
|...+ -+..+.+++ ++|++.+...
T Consensus 58 d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~ 88 (665)
T PRK13558 58 DHEPDGFDGLALLEAVRQTTAVPPVVVVPTA 88 (665)
T ss_pred eccCCCCcHHHHHHHHHhcCCCCCEEEEECC
Confidence 97554 233333332 4888777644
No 346
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.97 E-value=4.7e+02 Score=22.57 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc----hhHHHHHHHcCCCeE
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH----KVALQVSCSLNIPTY 99 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~----~~~~~vA~~~giP~v 99 (331)
...+.+++.++| .++.+..+.. . ..... +.++.+.. .++|.||..... .-....+.+.|||.+
T Consensus 18 ~~gi~~~~~~~g--~~~~~~~~~~-~-----~~~~~----~~l~~~~~-~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV 84 (273)
T cd06305 18 LAGTKAEAEALG--GDLRVYDAGG-D-----DAKQA----DQIDQAIA-QKVDAIIIQHGRAEVLKPWVKRALDAGIPVV 84 (273)
T ss_pred HHHHHHHHHHcC--CEEEEECCCC-C-----HHHHH----HHHHHHHH-cCCCEEEEecCChhhhHHHHHHHHHcCCCEE
Confidence 346778888999 9988764421 1 11122 23333322 379988875422 122345677899998
Q ss_pred EEec
Q 039208 100 LFYA 103 (331)
Q Consensus 100 ~~~~ 103 (331)
.+-.
T Consensus 85 ~~~~ 88 (273)
T cd06305 85 AFDV 88 (273)
T ss_pred EecC
Confidence 8754
No 347
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=23.93 E-value=1.2e+02 Score=26.91 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=20.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhc-cceeehh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIR-DPLTVAE 294 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lG-vG~~l~~ 294 (331)
|+++|+|+|+.+..+.+ ..+.+. + .|..++.
T Consensus 272 a~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~ 303 (348)
T cd03820 272 AMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN 303 (348)
T ss_pred HHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC
Confidence 99999999997654433 333343 4 6766643
No 348
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=23.86 E-value=77 Score=30.07 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.2
Q ss_pred CcccEEEEEc--CCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCC
Q 039208 5 WIIIRLFFNP--SPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPT 49 (331)
Q Consensus 5 ~~~~~i~~~p--~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~ 49 (331)
+..+||+|.+ ..|.||+-=...+|+.|++. | .+|++++.....
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~--~~Il~IsG~~~~ 53 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLG--FDILIISGGPPA 53 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccC--ceEEEEeCCCcc
Confidence 3456999998 56789999999999999998 9 999999876443
No 349
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=23.80 E-value=1.3e+02 Score=21.57 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=21.0
Q ss_pred CccEEEEcCcc--hhHHHHHHHcCCCeEEEe
Q 039208 74 NLKTLIIDFFH--KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 74 ~~d~vI~D~~~--~~~~~vA~~~giP~v~~~ 102 (331)
+...||++.-- .-++-+|+++|||++.-.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 56778877533 467889999999988744
No 350
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=23.78 E-value=5.2e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..+.+.-.++.|=..-+..|+..|..+| +.|.++..+
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~--~~v~~i~~D 71 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRG--LKVAVIAVD 71 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 3466777889999999999999999999 999888765
No 351
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=23.49 E-value=4.7e+02 Score=22.40 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEE
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLF 101 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~ 101 (331)
...+.+++.++| .++.+...... .. ..+.+.+++...++|.||...... -....+.+.|+|.|.+
T Consensus 22 ~~~i~~~~~~~g--~~~~~~~~~~~-------~~----~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~ 88 (268)
T cd06271 22 LSGLSEALAEHG--YDLVLLPVDPD-------ED----PLEVYRRLVESGLVDGVIISRTRPDDPRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHHHHCC--ceEEEecCCCc-------HH----HHHHHHHHHHcCCCCEEEEecCCCCChHHHHHHhcCCCEEEE
Confidence 346677788889 88877654311 11 112233333345799888754321 2234456789999987
Q ss_pred e
Q 039208 102 Y 102 (331)
Q Consensus 102 ~ 102 (331)
.
T Consensus 89 ~ 89 (268)
T cd06271 89 G 89 (268)
T ss_pred C
Confidence 4
No 352
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=23.27 E-value=2.5e+02 Score=24.46 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 20 HLLSMDELGKLILTH--YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 20 H~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
-.||...+++.|... | ++|....- +. -+..+.+.+.+++++ .+||+||+=
T Consensus 14 ~~NPS~~~v~~L~~~~~g--~~i~~~~l--PV----~~~~~~~~l~~~l~~----~~Pd~vi~~ 65 (212)
T TIGR00504 14 PVNPSWEAAEELDGRTIG--ATVVAEIL--PN----TFFEAIEALQQAIDE----IEPDIVIML 65 (212)
T ss_pred CCCcHHHHHHhcccCcCC--cEEEEEEe--CC----ChHHHHHHHHHHHHH----HCCCEEEEe
Confidence 489999999999775 5 66543322 11 233444555555544 378998853
No 353
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=23.20 E-value=4.1e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=-0.091 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
+.+.-.|+.|=..-.++++..++.+| ..|.|++++.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g--~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQG--KKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCC
Confidence 45666788999999999999999999 9999999875
No 354
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.15 E-value=1.3e+02 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.396 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhc-CCCccEEEEcCcc-----hhHHHHHHHcCCCeEEE
Q 039208 59 SPNLHKTLIIQSK-TSNLKTLIIDFFH-----KVALQVSCSLNIPTYLF 101 (331)
Q Consensus 59 ~~~l~~~l~~l~~-~~~~d~vI~D~~~-----~~~~~vA~~~giP~v~~ 101 (331)
.++++++++++++ ..++-+||.|.|. .=...+|.+.+||.+.+
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiL 180 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYIL 180 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEE
No 355
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.12 E-value=2.3e+02 Score=26.09 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCC---C--HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHH--------h-hhHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSS---H--LLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLAL--------L-NSPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~g---H--~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~--------~-~~~~l~~~l~~l~~~ 72 (331)
.-|++.|..+.| + .-=+.+|++.|.++| .+|.++.++.-.... .+.. . ....+.++..-+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~--~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali--- 249 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQG--YQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLI--- 249 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCC--CEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHH---
Confidence 346666654332 1 235789999998888 898877654221110 0000 0 011233332222
Q ss_pred CCccEEEEcCcchhHHHHHHHcCCCeEEEecc
Q 039208 73 SNLKTLIIDFFHKVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~ 104 (331)
.+.|++|+-- +....+|..+|+|.+.++..
T Consensus 250 ~~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 250 ALAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 2578888542 34688999999999987653
No 356
>PLN02778 3,5-epimerase/4-reductase
Probab=23.09 E-value=2.5e+02 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=23.7
Q ss_pred CCCCCc--ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEE
Q 039208 1 MSESWI--IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTII 43 (331)
Q Consensus 1 ~~~~~~--~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~ 43 (331)
|+.+.+ +++|+++ ++.|.+- ..|++.|.++| |+|++.
T Consensus 1 ~~~~~~~~~~kiLVt--G~tGfiG--~~l~~~L~~~g--~~V~~~ 39 (298)
T PLN02778 1 SNGTAGSATLKFLIY--GKTGWIG--GLLGKLCQEQG--IDFHYG 39 (298)
T ss_pred CCCCCCCCCCeEEEE--CCCCHHH--HHHHHHHHhCC--CEEEEe
Confidence 444443 3566655 4455443 46788999999 999864
No 357
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.82 E-value=1.6e+02 Score=29.83 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=38.3
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh------hHHH-------H---hHHHHHHHHHHHHhcCCChHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE------RRVI-------E---GIRAPKEQAVGALSEGGRSLAVV 322 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~------~~lm-------~---~a~~l~~~~~~a~~~ggss~~~l 322 (331)
|+++|+|+|+.... .+...+.+. ..|.-++. .+.+ + ...++.+.+++.+++-=|..+-+
T Consensus 492 AMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv 566 (578)
T PRK15490 492 AQMVGVPVISTPAG----GSAECFIEG-VSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMV 566 (578)
T ss_pred HHHhCCCEEEeCCC----CcHHHcccC-CcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 99999999988653 456666664 67776653 1111 1 22234455555555555555555
Q ss_pred HHHHHHH
Q 039208 323 AELAESF 329 (331)
Q Consensus 323 ~~~v~~~ 329 (331)
+++.+-+
T Consensus 567 ~~y~ki~ 573 (578)
T PRK15490 567 GTFVKTI 573 (578)
T ss_pred HHHHHHH
Confidence 5555443
No 358
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=22.69 E-value=8.5e+02 Score=25.32 Aligned_cols=95 Identities=7% Similarity=0.037 Sum_probs=59.2
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcch-HHHh------hhHHHHHHHHHhhc-CCCccEEE
Q 039208 9 RLFFNPSP-GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQ-LALL------NSPNLHKTLIIQSK-TSNLKTLI 79 (331)
Q Consensus 9 ~i~~~p~p-~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p-~~~~------~~~~l~~~l~~l~~-~~~~d~vI 79 (331)
.|++.+.. ..|=..-.+.|++.|.++| .+|.++=+.......+ .... ....++.+++.+.+ ..+.|+||
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G--~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VL 81 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKG--VKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVL 81 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEE
Confidence 36666443 4688899999999999999 9999875432211101 1100 01122333333322 35789999
Q ss_pred EcCcch---------hHHHHHHHcCCCeEEEeccc
Q 039208 80 IDFFHK---------VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 80 ~D~~~~---------~~~~vA~~~giP~v~~~~~~ 105 (331)
.|...+ ...++|+.+|.|.+.+....
T Consensus 82 IEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 82 VEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred EeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 776432 24788999999999988654
No 359
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=88 Score=30.24 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=28.4
Q ss_pred cEEEEEcCC-C--CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSP-G--SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p-~--~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..+.|=|++ + .||+.|+.-|. .|++.| |+|+++...
T Consensus 35 ~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aG--h~~ivLigd 73 (401)
T COG0162 35 VYIGFDPTAPSLHLGHLVPLMKLR-RFQDAG--HKPIVLIGD 73 (401)
T ss_pred EEEeeCCCCCccchhhHHHHHHHH-HHHHCC--CeEEEEecc
Confidence 346666665 3 49999999886 799999 999998865
No 360
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=22.57 E-value=2.6e+02 Score=26.25 Aligned_cols=28 Identities=7% Similarity=-0.197 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 19 SHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 19 gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
.+..=-.+|+.+|+++| |+|.|+.+...
T Consensus 17 ~~~~~~qhl~~~~a~~~--~~vl~v~~~~~ 44 (373)
T cd04950 17 FLWQRPQHLAARLAERG--NRVLYVEPPGL 44 (373)
T ss_pred CCCCCHHHHHHHHHhCC--CeEEEEeCCCc
Confidence 45666788999999999 99999987643
No 361
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.47 E-value=3.9e+02 Score=24.86 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++||+|+-.|-.+ ...-++|.++| |+|.-+.+.
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~--~eivaV~Tq 33 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAG--HEIVAVVTQ 33 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCC--CceEEEEeC
Confidence 4788998877543 33446778899 998766554
No 362
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.33 E-value=3.4e+02 Score=25.54 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHh----h---cCCCccEEEE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQ----S---KTSNLKTLII 80 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l----~---~~~~~d~vI~ 80 (331)
.-++|+-.-|.|-..-...||+.|.+.| +.|.++..+.++. .+...|+.--+++ . .+..|..|++
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRA------aAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRA------AAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHH------HHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 3478888999999999999999999999 9999988764331 2233333322222 0 0112222333
Q ss_pred cCcchhHHHHHHHcCCCeEEEeccc
Q 039208 81 DFFHKVALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 81 D~~~~~~~~vA~~~giP~v~~~~~~ 105 (331)
| +..-|...|+-.+..-|.+
T Consensus 212 D-----Ai~~Akar~~DvvliDTAG 231 (340)
T COG0552 212 D-----AIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred H-----HHHHHHHcCCCEEEEeCcc
Confidence 3 4456667777777776654
No 363
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.32 E-value=1.3e+02 Score=28.24 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=20.2
Q ss_pred CCccEEE--EcCcch-hHHHHHHHcCCCeEEEecc
Q 039208 73 SNLKTLI--IDFFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 73 ~~~d~vI--~D~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
.+||+|| -|-+.. .++.+|..++||.+.+...
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 4888876 466655 5677888899997776543
No 364
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=22.13 E-value=3.7e+02 Score=23.06 Aligned_cols=37 Identities=8% Similarity=-0.208 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
+++.--|+.|=..-..+++...+++| ..|.|++.+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g--~~~~y~s~e~~ 55 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNG--EKAMYISLEER 55 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 45556678898888889988888889 99999988654
No 365
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.07 E-value=5.3e+02 Score=22.39 Aligned_cols=63 Identities=5% Similarity=-0.032 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc--hhHHHHHHHcCCCeEEEec
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH--KVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~--~~~~~vA~~~giP~v~~~~ 103 (331)
.+.+.+.+.| .++.+..+.. -+ . ..+. +.+...++|.||..... .-....+.+.|||.|.+..
T Consensus 31 gi~~~~~~~g--~~~~v~~~~~-------~~--~---~~~~-~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 31 GIADALAERG--YDLLLSFVSS-------PD--R---DWLA-RYLASGRADGVILIGQHDQDPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHcC--CEEEEEeCCc-------hh--H---HHHH-HHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECC
Confidence 3667777889 8988765431 10 1 1122 22234589988754322 2234556678999998754
No 366
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=22.01 E-value=1.7e+02 Score=23.04 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEec
Q 039208 64 KTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~ 103 (331)
+.++++.+...|-+||++.+.. +...+|++.|+|.....-
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 4566666666788888888764 788999999999877543
No 367
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=21.67 E-value=5.2e+02 Score=22.21 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=44.4
Q ss_pred EEcCCCCCCHHHHH-HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch---hH
Q 039208 12 FNPSPGSSHLLSMD-ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK---VA 87 (331)
Q Consensus 12 ~~p~p~~gH~~p~~-~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~---~~ 87 (331)
++|......+..+. .+..++.++| .++.+....... . .....+++.+ ...++|.||...... -.
T Consensus 5 i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~------~---~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~ 72 (270)
T cd01545 5 LYDNPSPGYVSEIQLGALDACRDTG--YQLVIEPCDSGS------P---DLAERVRALL-QRSRVDGVILTPPLSDNPEL 72 (270)
T ss_pred EEcCCCcccHHHHHHHHHHHHHhCC--CeEEEEeCCCCc------h---HHHHHHHHHH-HHCCCCEEEEeCCCCCccHH
Confidence 44443333444443 5667778889 888876543111 0 1112222222 335899888765421 22
Q ss_pred HHHHHHcCCCeEEEec
Q 039208 88 LQVSCSLNIPTYLFYA 103 (331)
Q Consensus 88 ~~vA~~~giP~v~~~~ 103 (331)
...+.+.|+|.+.+..
T Consensus 73 ~~~~~~~~ipvv~i~~ 88 (270)
T cd01545 73 LDLLDEAGVPYVRIAP 88 (270)
T ss_pred HHHHHhcCCCEEEEec
Confidence 3456678999998864
No 368
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=21.59 E-value=6e+02 Score=22.87 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
|||+++-. .|- --..|.+.|.++| ++|.-++.. ..+ + .....+.+++++. +||+||.-....
T Consensus 1 MriLI~Ga--sG~--lG~~l~~~l~~~~--~~v~~~~r~-~~d----l-~d~~~~~~~~~~~----~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 1 MRILITGA--SGF--LGSALARALKERG--YEVIATSRS-DLD----L-TDPEAVAKLLEAF----KPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEEETT--TSH--HHHHHHHHHTTTS--EEEEEESTT-CS-----T-TSHHHHHHHHHHH------SEEEE------H
T ss_pred CEEEEECC--CCH--HHHHHHHHHhhCC--CEEEEeCch-hcC----C-CCHHHHHHHHHHh----CCCeEeccceeecH
Confidence 56676643 332 2245778888999 998765322 111 1 1234455555554 788888664221
Q ss_pred -------------------hHHHHHHHcCCCeEEEeccc
Q 039208 86 -------------------VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 -------------------~~~~vA~~~giP~v~~~~~~ 105 (331)
..+..+.+.|++.+.+++..
T Consensus 65 ~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~ 103 (286)
T PF04321_consen 65 DACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDY 103 (286)
T ss_dssp HHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred HhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence 22345567899988888764
No 369
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=21.30 E-value=1.5e+02 Score=26.33 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|.|.++.-+|-|=..-...||..|+++| ++|.++=.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g--~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLG--KRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 4577777788899999999999999999 99987743
No 370
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=21.17 E-value=2.6e+02 Score=23.83 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=24.1
Q ss_pred cCCCccEEEEcC--cchhHHHHHHHcCCCeEEEe
Q 039208 71 KTSNLKTLIIDF--FHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 71 ~~~~~d~vI~D~--~~~~~~~vA~~~giP~v~~~ 102 (331)
+..++|+|+.=. -.+.+..+|.++|+|.+...
T Consensus 47 ~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 47 KDEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred ccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 345789998532 33578889999999998765
No 371
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.13 E-value=6.4e+02 Score=28.01 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh----HHHHHHH
Q 039208 18 SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV----ALQVSCS 93 (331)
Q Consensus 18 ~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~----~~~vA~~ 93 (331)
.|+..+.-.|.++|.++| .+|.-+......+ +...+.+.+.....++|+||.-..+.. +..+-++
T Consensus 212 ~~~~~~idali~~Le~~G--~~~ipvf~~~l~~---------~~~~~~~~~~~~~~~~d~iin~t~F~~~~~~~~~~l~~ 280 (1100)
T PRK12321 212 AADTAPVDALAAALRARG--FAAVGLFVPSLKD---------PEAAAWLRAALAALRPAAIVNATAFSARGDDGASPLDA 280 (1100)
T ss_pred cCCcHHHHHHHHHHHHCC--CEEEEEEeccccc---------hhHHHHHHHhccCCCCCEEEecCcccCCCcchhhHHHH
Confidence 478899999999999999 8886443211110 111233333334568999997633321 2345688
Q ss_pred cCCCeEEEecc
Q 039208 94 LNIPTYLFYAS 104 (331)
Q Consensus 94 ~giP~v~~~~~ 104 (331)
+|||++....+
T Consensus 281 l~vPVlq~i~~ 291 (1100)
T PRK12321 281 ADCPVFQVALA 291 (1100)
T ss_pred CCCCEEEEecC
Confidence 99999885543
No 372
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.92 E-value=1.3e+02 Score=29.38 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=29.8
Q ss_pred cEEEEEcCCC---CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPG---SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~---~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|+|+++-+=+ .|+=--+..+...|.++.|+.++|+++-.
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~ 42 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRY 42 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 4566665443 47777888999999999888999998753
No 373
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=20.85 E-value=6e+02 Score=28.22 Aligned_cols=89 Identities=10% Similarity=-0.018 Sum_probs=57.4
Q ss_pred cccEEEEEcCCC---CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 6 IIIRLFFNPSPG---SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 6 ~~~~i~~~p~p~---~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
.++.|.++-+-+ .|..-..-.|.++|-++| .+|.-+..... ......+++.+..- ...++|+||+-.
T Consensus 70 ~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G--~nvipvf~~~~-------~~~~~~i~~~f~~~-g~~~vDaIIn~~ 139 (1098)
T PF02514_consen 70 NRPTVGILFYRSYWLSGNTAVVDALIRALEERG--LNVIPVFCSSG-------PDSQEAIEDYFMDD-GKPRVDAIINLT 139 (1098)
T ss_pred CCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCC--CeEEEEEecCc-------cchHHHHHHHHhhc-CCCCceEEEEcC
Confidence 456777666544 377888999999999999 99866543210 01122233333321 246899999886
Q ss_pred cch-------hHHHHHHHcCCCeEEEecc
Q 039208 83 FHK-------VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 83 ~~~-------~~~~vA~~~giP~v~~~~~ 104 (331)
.+. .+..+-+++|||++.-.+.
T Consensus 140 ~f~l~~~~~~~~~~~L~~LnVPVlq~i~~ 168 (1098)
T PF02514_consen 140 GFSLGGGPAGGAIELLKELNVPVLQAITL 168 (1098)
T ss_pred ccccCCCCcchhHHHHHHCCCCEEEeecc
Confidence 553 2466888999999875543
No 374
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=4.1e+02 Score=22.99 Aligned_cols=61 Identities=8% Similarity=-0.134 Sum_probs=38.1
Q ss_pred EEEEEcCC-CCC-CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 9 RLFFNPSP-GSS-HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 9 ~i~~~p~p-~~g-H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+|++.-|- .-| -.||....+++|-.+ | ++|.-..-+ . .++.....+...+++ .+||+|+.=
T Consensus 2 kvLvTGFePF~~~~~NPs~e~vk~L~~~~i~g--~~V~~~~lP--~----~f~~s~~~l~~~i~~----~qPd~vl~i 67 (207)
T COG2039 2 KVLVTGFEPFGGEPINPSWEAVKELNGRIIGG--AEVKGRILP--V----VFKKSIDALVQAIAE----VQPDLVLAI 67 (207)
T ss_pred eEEEEeccCCCCCCCChHHHHHHhcCcccccC--ceEEEEEcC--c----cHHHHHHHHHHHHHh----hCCCeEEEe
Confidence 45555432 233 489999999999876 5 777654331 1 345555555555544 489998854
No 375
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.74 E-value=5.2e+02 Score=27.07 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.2
Q ss_pred ccEEEEEcC--CCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPS--PGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~--p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..+++++++ |+.|=-.-...||..|+..| .+|.++=.+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G--~rVLlID~D 569 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSD--QKVLFIDAD 569 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 346555554 46777888999999999999 999887553
No 376
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=20.72 E-value=1.8e+02 Score=27.65 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-HHHhh---hHHHHHHHHHhh--cCCCccE
Q 039208 14 PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-LALLN---SPNLHKTLIIQS--KTSNLKT 77 (331)
Q Consensus 14 p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-~~~~~---~~~l~~~l~~l~--~~~~~d~ 77 (331)
-.++-|...-...+++...++| +.|.++..+...+.. | ..... ...+...++.+. ...+++.
T Consensus 17 G~GGGG~p~~~~~~~~~~l~~~--~~v~lv~~del~dd~~v~~v~~~GsP~v~~E~lp~g~e~~~a~~~le~~~g~~~~a 94 (353)
T PF06032_consen 17 GSGGGGDPYIGRLMAEQALREG--GPVRLVDPDELPDDDLVVPVGMMGSPTVSVEKLPSGDEALRAVEALEKYLGRKIDA 94 (353)
T ss_dssp TTT-SS-HHHHHHHHTT-SBTT--S-EEEE-GGG--SSE-EEEEEEEE-HHHTT-SS-HHHHHHHHHHHHHHHTT--EEE
T ss_pred EEcCCccHHHHHHHHHHHHhCC--CCeEEEEHhHcCCCCcEeEEEEeCCChHHhccCCCchHHHHHHHHHHHhhCCCccE
Confidence 3456677777888888888899 999999887654432 3 11111 112222222222 1467999
Q ss_pred EEEcCcc----hhHHHHHHHcCCCeEE
Q 039208 78 LIIDFFH----KVALQVSCSLNIPTYL 100 (331)
Q Consensus 78 vI~D~~~----~~~~~vA~~~giP~v~ 100 (331)
|+.--.- .-...+|.++|+|.+=
T Consensus 95 v~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 95 VIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp EE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred EeehhcCccchhHHHHHHHHhCCCEEc
Confidence 9975422 2455688899999763
No 377
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.62 E-value=5.9e+02 Score=22.38 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc----hhHHHHHHHcCCCeEEE
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH----KVALQVSCSLNIPTYLF 101 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~----~~~~~vA~~~giP~v~~ 101 (331)
.+-+++.++| .++++..+... ... ..+.++.+ ...++|.||.-... .-....+++.|+|.+.+
T Consensus 21 gi~~~a~~~g--y~~~~~~~~~~------~~~----~~~~i~~l-~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 21 GVREAAKAIG--WNLRILDGRGS------EAG----QAAALNQA-IALKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHcC--cEEEEECCCCC------HHH----HHHHHHHH-HHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 4457777889 99887654311 111 12333333 23589988875432 11234566789999988
Q ss_pred ec
Q 039208 102 YA 103 (331)
Q Consensus 102 ~~ 103 (331)
..
T Consensus 88 d~ 89 (280)
T cd06315 88 HA 89 (280)
T ss_pred cC
Confidence 54
No 378
>PRK06526 transposase; Provisional
Probab=20.61 E-value=2.3e+02 Score=25.37 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=44.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhh-----HHHHHHHHHhhcCCCccEEEEcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNS-----PNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~-----~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
..++++-.+|.|=..-...|+.++.++| +.|.|.+... ++.... ..+.+.+..+ .++|+||.|-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~t~~~------l~~~l~~~~~~~~~~~~l~~l---~~~dlLIIDD 167 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG--HRVLFATAAQ------WVARLAAAHHAGRLQAELVKL---GRYPLLIVDE 167 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC--CchhhhhHHH------HHHHHHHHHhcCcHHHHHHHh---ccCCEEEEcc
Confidence 4688888889998888899999999999 9987765421 222111 1223333333 3689999997
Q ss_pred cc
Q 039208 83 FH 84 (331)
Q Consensus 83 ~~ 84 (331)
+.
T Consensus 168 ~g 169 (254)
T PRK06526 168 VG 169 (254)
T ss_pred cc
Confidence 54
No 379
>PRK08181 transposase; Validated
Probab=20.57 E-value=3.6e+02 Score=24.40 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhh-----hHHHHHHHHHhhcCCCccEEEEcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLN-----SPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~-----~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
-.++++-.+|.|=..-...+++++.++| +.|.|++... ++... ...+.+.++.+ .++|++|.|-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~~~~~------L~~~l~~a~~~~~~~~~l~~l---~~~dLLIIDD 175 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENG--WRVLFTRTTD------LVQKLQVARRELQLESAIAKL---DKFDLLILDD 175 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC--CceeeeeHHH------HHHHHHHHHhCCcHHHHHHHH---hcCCEEEEec
Confidence 3588888888888888889999999999 9998876531 22211 11223344444 3789999996
Q ss_pred c
Q 039208 83 F 83 (331)
Q Consensus 83 ~ 83 (331)
+
T Consensus 176 l 176 (269)
T PRK08181 176 L 176 (269)
T ss_pred c
Confidence 5
No 380
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=20.52 E-value=4.9e+02 Score=24.52 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=29.1
Q ss_pred EcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 13 NPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 13 ~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
++.+|.|-.--.+.|+++|.+|| ..+-+++=.+-
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG--~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARG--VRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcC--CeeEEEecCcC
Confidence 56788999999999999999999 99998875443
No 381
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=20.45 E-value=1.2e+02 Score=27.94 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.3
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++++|+++-.++.| .-+|..|++.| |+|+++.-.
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g--~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAG--FDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCC--CeEEEEEeC
Confidence 34789998766655 45778899999 999998753
No 382
>smart00526 H15 Domain in histone families 1 and 5.
Probab=20.37 E-value=1.2e+02 Score=20.70 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.6
Q ss_pred hcCCChHHHHHHHHHH
Q 039208 313 SEGGRSLAVVAELAES 328 (331)
Q Consensus 313 ~~ggss~~~l~~~v~~ 328 (331)
+.+|||...+.++|..
T Consensus 20 er~GsS~~aI~kyi~~ 35 (66)
T smart00526 20 ERKGSSLQAIKKYIEA 35 (66)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 5689999999999864
No 383
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.24 E-value=3e+02 Score=26.07 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----hHHH---------hhhHHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----QLAL---------LNSPNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p~~~---------~~~~~l~~~l~~l~~~~ 73 (331)
.++++.. +-.-...|++.|.+.| .+|..+......... ..+. .....+++.++ ..
T Consensus 272 ~~v~i~~-----~~~~~~~l~~~L~elG--~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~ 340 (398)
T PF00148_consen 272 KRVAIYG-----DPDRALGLARFLEELG--MEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEELLE----EL 340 (398)
T ss_dssp -EEEEES-----SHHHHHHHHHHHHHTT---EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHHHHH----HH
T ss_pred ceEEEEc-----CchhHHHHHHHHHHcC--CeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHHHHH----hc
Confidence 3566533 3355568999999999 999888765332110 0000 01122333333 34
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
++|+++.+.. ...+|+++|+|.+.+.
T Consensus 341 ~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 341 KPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp T-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred CCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 8999999865 6788999977766643
No 384
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=20.21 E-value=5.5e+02 Score=21.92 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEE
Q 039208 23 SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYL 100 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~ 100 (331)
-...+.+++.++| .++.+..+... -. ...+.++++. ..++|.||...... -....+.+.|+|.+.
T Consensus 17 ~~~gi~~~~~~~g--~~~~~~~~~~~------~~----~~~~~i~~l~-~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~ 83 (259)
T cd01542 17 TVKGILAALYENG--YQMLLMNTNFS------IE----KEIEALELLA-RQKVDGIILLATTITDEHREAIKKLNVPVVV 83 (259)
T ss_pred HHHHHHHHHHHCC--CEEEEEeCCCC------HH----HHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhcCCCCEEE
Confidence 3445567788899 99987654311 11 1123333432 35899988754332 233455667999998
Q ss_pred Ee
Q 039208 101 FY 102 (331)
Q Consensus 101 ~~ 102 (331)
+-
T Consensus 84 ~~ 85 (259)
T cd01542 84 VG 85 (259)
T ss_pred Ee
Confidence 74
No 385
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.01 E-value=5.9e+02 Score=22.16 Aligned_cols=66 Identities=6% Similarity=-0.080 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-hH--HHHHHHcCCCeEEEe
Q 039208 26 ELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-VA--LQVSCSLNIPTYLFY 102 (331)
Q Consensus 26 ~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-~~--~~vA~~~giP~v~~~ 102 (331)
.+-+++.++| .++.+..+....+ .... .+.++.+. +.++|.||...... .. ..-+.+.|||.+.+.
T Consensus 20 gi~~~a~~~g--~~~~~~~~~~~~~----~~~~----~~~i~~~~-~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~ 88 (268)
T cd06306 20 GMVEEAKRLG--VSLKLLEAGGYPN----LAKQ----IAQLEDCA-AWGADAILLGAVSPDGLNEILQQVAASIPVIALV 88 (268)
T ss_pred HHHHHHHHcC--CEEEEecCCCCCC----HHHH----HHHHHHHH-HcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEec
Confidence 4446677889 8988765421111 1111 22333332 34899998765332 21 445667899999874
Done!