Query 039208
Match_columns 331
No_of_seqs 198 out of 1394
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 4.4E-55 1.5E-59 422.9 22.2 308 5-331 11-454 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 2E-50 6.9E-55 394.5 26.1 325 1-330 1-468 (480)
3 2c1x_A UDP-glucose flavonoid 3 100.0 7.1E-48 2.4E-52 374.3 23.9 312 1-331 1-452 (456)
4 2acv_A Triterpene UDP-glucosyl 100.0 8.4E-48 2.9E-52 374.5 24.1 307 1-330 3-462 (463)
5 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.9E-47 6.6E-52 373.8 19.6 309 6-331 7-479 (482)
6 4amg_A Snogd; transferase, pol 100.0 3E-34 1E-38 272.3 18.1 272 4-310 19-384 (400)
7 2iya_A OLEI, oleandomycin glyc 100.0 1.2E-29 4E-34 243.2 22.1 256 4-293 9-370 (424)
8 1iir_A Glycosyltransferase GTF 100.0 1.3E-27 4.3E-32 228.8 18.5 251 8-293 1-350 (415)
9 1rrv_A Glycosyltransferase GTF 99.9 1.9E-26 6.3E-31 220.6 17.6 252 8-293 1-351 (416)
10 3rsc_A CALG2; TDP, enediyne, s 99.9 1.2E-25 4E-30 214.4 21.5 258 3-294 16-363 (415)
11 3ia7_A CALG4; glycosysltransfe 99.9 9.2E-25 3.2E-29 206.7 21.8 289 6-329 3-397 (402)
12 3h4t_A Glycosyltransferase GTF 99.9 3.5E-25 1.2E-29 211.3 17.5 252 8-293 1-333 (404)
13 2iyf_A OLED, oleandomycin glyc 99.9 5.1E-25 1.8E-29 211.0 17.3 259 1-293 1-348 (430)
14 2yjn_A ERYCIII, glycosyltransf 99.9 1E-22 3.5E-27 196.1 21.1 254 5-293 18-384 (441)
15 2p6p_A Glycosyl transferase; X 99.9 1.3E-22 4.3E-27 191.5 18.9 249 8-293 1-328 (384)
16 3oti_A CALG3; calicheamicin, T 99.9 2.2E-22 7.7E-27 190.9 20.3 284 5-327 18-394 (398)
17 4fzr_A SSFS6; structural genom 99.9 1E-21 3.4E-26 186.4 18.4 256 4-293 12-349 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 99.8 4.7E-20 1.6E-24 174.2 19.2 251 7-293 1-335 (391)
19 3otg_A CALG1; calicheamicin, T 99.8 3.5E-18 1.2E-22 162.2 20.6 258 4-294 17-358 (412)
20 3s2u_A UDP-N-acetylglucosamine 99.6 1.4E-13 4.9E-18 129.3 22.1 246 8-294 3-306 (365)
21 2o6l_A UDP-glucuronosyltransfe 99.5 2.4E-14 8.3E-19 119.6 9.0 105 162-294 6-136 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.2 1.6E-09 5.6E-14 100.3 18.6 281 8-330 7-355 (364)
23 3hbm_A UDP-sugar hydrolase; PS 97.9 0.00022 7.4E-09 64.1 13.3 235 8-293 1-273 (282)
24 2jzc_A UDP-N-acetylglucosamine 97.6 7.3E-05 2.5E-09 64.9 5.9 53 241-294 117-186 (224)
25 2x6q_A Trehalose-synthase TRET 96.6 0.26 8.7E-06 45.6 19.7 41 4-46 37-79 (416)
26 3c48_A Predicted glycosyltrans 95.5 0.054 1.8E-06 50.6 9.5 99 4-104 17-154 (438)
27 2r60_A Glycosyl transferase, g 95.4 0.048 1.7E-06 52.1 9.2 44 1-46 1-59 (499)
28 3fro_A GLGA glycogen synthase; 95.4 0.14 5E-06 47.3 12.1 86 238-330 311-428 (439)
29 2gek_A Phosphatidylinositol ma 95.1 0.11 3.8E-06 47.7 10.2 99 4-104 17-139 (406)
30 2iuy_A Avigt4, glycosyltransfe 94.2 0.032 1.1E-06 50.4 3.8 87 7-101 3-109 (342)
31 1v4v_A UDP-N-acetylglucosamine 94.1 0.18 6.1E-06 46.0 8.9 96 1-102 1-122 (376)
32 3dzc_A UDP-N-acetylglucosamine 92.0 0.61 2.1E-05 43.3 9.3 95 4-102 22-142 (396)
33 3okp_A GDP-mannose-dependent a 91.9 0.14 4.9E-06 46.6 4.7 94 5-102 2-116 (394)
34 2jjm_A Glycosyl transferase, g 90.7 1.4 4.9E-05 40.1 10.3 39 7-47 15-54 (394)
35 3ot5_A UDP-N-acetylglucosamine 90.4 1.4 4.8E-05 41.0 9.9 90 6-102 26-145 (403)
36 2wqk_A 5'-nucleotidase SURE; S 90.0 2.9 9.9E-05 36.3 10.9 94 7-104 1-128 (251)
37 1vgv_A UDP-N-acetylglucosamine 89.6 1 3.6E-05 40.7 8.3 93 8-103 1-118 (384)
38 2f9f_A First mannosyl transfer 88.7 3 0.0001 33.4 9.7 50 238-292 78-145 (177)
39 3eod_A Protein HNR; response r 88.3 4.4 0.00015 30.0 9.8 82 1-105 1-89 (130)
40 3beo_A UDP-N-acetylglucosamine 88.2 1.7 5.8E-05 39.1 8.6 95 6-102 7-126 (375)
41 4gyw_A UDP-N-acetylglucosamine 87.7 2.1 7.2E-05 43.2 9.7 100 175-293 520-652 (723)
42 2rjn_A Response regulator rece 85.5 6.3 0.00021 30.2 9.6 83 1-106 1-90 (154)
43 3gt7_A Sensor protein; structu 85.2 6.8 0.00023 30.2 9.7 82 1-105 1-91 (154)
44 2iw1_A Lipopolysaccharide core 85.2 1.6 5.5E-05 39.1 6.7 37 8-46 1-40 (374)
45 2gek_A Phosphatidylinositol ma 85.0 2.8 9.6E-05 38.0 8.3 84 238-327 263-378 (406)
46 3rhz_A GTF3, nucleotide sugar 84.0 1.7 5.9E-05 39.5 6.2 66 259-329 260-337 (339)
47 3vue_A GBSS-I, granule-bound s 81.8 1.6 5.6E-05 42.2 5.5 46 1-48 1-54 (536)
48 1psw_A ADP-heptose LPS heptosy 80.4 3.9 0.00013 36.5 7.3 93 8-102 1-108 (348)
49 3s28_A Sucrose synthase 1; gly 80.0 4.3 0.00015 41.5 8.0 65 259-328 684-765 (816)
50 3c48_A Predicted glycosyltrans 79.3 2.1 7.2E-05 39.4 5.2 72 238-314 306-408 (438)
51 2phj_A 5'-nucleotidase SURE; S 79.0 21 0.00072 30.8 11.0 93 8-104 2-128 (251)
52 1ys7_A Transcriptional regulat 77.5 12 0.00042 30.8 9.1 81 1-104 1-88 (233)
53 2x0d_A WSAF; GT4 family, trans 75.9 1.7 5.9E-05 40.5 3.5 41 5-47 44-89 (413)
54 3fro_A GLGA glycogen synthase; 74.6 7.8 0.00027 35.3 7.6 39 7-47 2-45 (439)
55 3tov_A Glycosyl transferase fa 74.5 6 0.0002 35.8 6.7 94 6-100 7-115 (349)
56 3hdv_A Response regulator; PSI 73.9 11 0.00037 28.0 7.1 83 1-105 1-91 (136)
57 3hv2_A Response regulator/HD d 72.0 23 0.0008 26.8 8.9 79 4-105 11-96 (153)
58 3kto_A Response regulator rece 71.3 16 0.00056 27.1 7.7 78 6-106 5-91 (136)
59 3grc_A Sensor protein, kinase; 70.2 29 0.00099 25.6 8.9 76 6-104 5-89 (140)
60 3cg4_A Response regulator rece 69.7 19 0.00066 26.7 7.8 62 1-85 1-62 (142)
61 3vot_A L-amino acid ligase, BL 69.1 22 0.00077 32.7 9.5 83 8-98 6-101 (425)
62 1rzu_A Glycogen synthase 1; gl 67.8 4.6 0.00016 37.8 4.4 37 8-46 1-43 (485)
63 3gl9_A Response regulator; bet 67.2 30 0.001 25.0 8.3 74 9-105 4-86 (122)
64 3m6m_D Sensory/regulatory prot 66.6 26 0.00089 26.3 8.0 76 7-105 14-100 (143)
65 2vsy_A XCC0866; transferase, g 66.1 14 0.00048 35.2 7.6 40 5-46 203-246 (568)
66 3pdi_B Nitrogenase MOFE cofact 65.9 21 0.00071 33.7 8.5 83 8-101 314-399 (458)
67 3lte_A Response regulator; str 65.6 36 0.0012 24.7 9.1 76 6-104 5-88 (132)
68 2r60_A Glycosyl transferase, g 65.5 8 0.00027 36.3 5.6 85 238-327 335-454 (499)
69 3cg0_A Response regulator rece 65.4 38 0.0013 24.8 10.3 83 2-106 4-93 (140)
70 2qzs_A Glycogen synthase; glyc 65.3 5.6 0.00019 37.2 4.5 37 8-46 1-43 (485)
71 3t6k_A Response regulator rece 64.7 40 0.0014 24.9 9.2 76 7-105 4-88 (136)
72 2yxb_A Coenzyme B12-dependent 64.5 21 0.00072 28.4 7.2 39 5-45 16-54 (161)
73 3hdg_A Uncharacterized protein 64.2 14 0.00048 27.4 5.9 81 1-104 1-88 (137)
74 3qvl_A Putative hydantoin race 64.0 30 0.001 29.6 8.5 91 8-101 2-97 (245)
75 1v4v_A UDP-N-acetylglucosamine 63.8 4.9 0.00017 36.2 3.6 49 239-292 256-317 (376)
76 3q3e_A HMW1C-like glycosyltran 63.7 5.4 0.00018 39.4 4.0 31 241-271 502-549 (631)
77 3rqi_A Response regulator prot 62.5 40 0.0014 26.6 8.7 78 5-105 5-89 (184)
78 2gt1_A Lipopolysaccharide hept 62.3 14 0.00046 32.7 6.3 42 8-49 1-42 (326)
79 3i42_A Response regulator rece 61.1 43 0.0015 24.1 8.9 75 7-104 3-86 (127)
80 2qvg_A Two component response 60.8 41 0.0014 24.8 8.1 83 1-105 1-99 (143)
81 3ot5_A UDP-N-acetylglucosamine 60.4 9.5 0.00033 35.2 5.0 86 239-329 283-392 (403)
82 3oy2_A Glycosyltransferase B73 60.0 14 0.00046 33.6 6.0 37 8-47 1-40 (413)
83 2qr3_A Two-component system re 58.9 50 0.0017 24.1 8.3 76 7-105 3-90 (140)
84 2iuy_A Avigt4, glycosyltransfe 58.5 16 0.00054 32.1 6.0 51 238-293 212-292 (342)
85 4dim_A Phosphoribosylglycinami 58.0 24 0.00081 32.2 7.3 83 5-97 5-97 (403)
86 2i2x_B MTAC, methyltransferase 57.4 39 0.0013 29.0 8.2 40 5-46 121-160 (258)
87 4a1f_A DNAB helicase, replicat 57.3 17 0.00058 32.9 5.9 37 10-48 49-85 (338)
88 4hwg_A UDP-N-acetylglucosamine 57.3 16 0.00056 33.5 6.0 87 8-102 10-124 (385)
89 3h5i_A Response regulator/sens 57.1 56 0.0019 24.1 10.2 77 6-104 4-87 (140)
90 2qxy_A Response regulator; reg 57.0 55 0.0019 24.0 9.6 75 7-105 4-85 (142)
91 3beo_A UDP-N-acetylglucosamine 56.8 6.2 0.00021 35.3 3.0 51 238-293 263-326 (375)
92 1vgv_A UDP-N-acetylglucosamine 56.5 5.6 0.00019 35.7 2.6 50 239-293 264-326 (384)
93 2iw1_A Lipopolysaccharide core 56.3 16 0.00055 32.3 5.7 64 259-327 290-369 (374)
94 1y80_A Predicted cobalamin bin 56.1 35 0.0012 28.1 7.4 38 6-45 87-124 (210)
95 3jte_A Response regulator rece 54.9 60 0.0021 23.8 9.2 77 7-105 3-87 (143)
96 1qkk_A DCTD, C4-dicarboxylate 54.2 66 0.0023 24.1 9.2 76 7-105 3-85 (155)
97 2b8t_A Thymidine kinase; deoxy 53.9 54 0.0018 27.5 8.3 94 7-103 11-124 (223)
98 2jjm_A Glycosyl transferase, g 53.6 13 0.00043 33.6 4.5 66 259-329 304-382 (394)
99 3okp_A GDP-mannose-dependent a 52.0 16 0.00055 32.5 5.0 66 259-330 299-377 (394)
100 3f6p_A Transcriptional regulat 51.6 63 0.0021 23.0 8.2 74 9-105 4-83 (120)
101 3pdi_A Nitrogenase MOFE cofact 51.0 30 0.001 32.8 6.8 84 8-102 333-426 (483)
102 2rdm_A Response regulator rece 50.8 66 0.0023 23.1 10.2 78 5-105 3-89 (132)
103 3r0j_A Possible two component 49.6 77 0.0026 26.3 8.8 77 6-105 22-105 (250)
104 3u7q_B Nitrogenase molybdenum- 49.0 41 0.0014 32.3 7.4 83 8-101 365-469 (523)
105 2xci_A KDO-transferase, 3-deox 47.9 20 0.00067 32.6 4.9 34 259-293 298-331 (374)
106 1ccw_A Protein (glutamate muta 47.4 26 0.0009 26.9 4.9 37 7-45 3-39 (137)
107 3hcw_A Maltose operon transcri 46.5 93 0.0032 26.4 9.0 90 1-103 1-99 (295)
108 2r8r_A Sensor protein; KDPD, P 46.3 27 0.00093 29.6 5.1 41 4-46 3-43 (228)
109 1yio_A Response regulatory pro 46.3 1.1E+02 0.0037 24.3 9.3 74 7-103 4-84 (208)
110 1xp8_A RECA protein, recombina 44.3 95 0.0033 28.1 8.9 73 10-85 77-163 (366)
111 2bfw_A GLGA glycogen synthase; 43.4 35 0.0012 27.1 5.3 49 239-293 96-163 (200)
112 4e7p_A Response regulator; DNA 43.4 99 0.0034 22.9 9.8 79 6-105 19-104 (150)
113 3zqu_A Probable aromatic acid 43.0 37 0.0013 28.4 5.4 36 8-46 5-40 (209)
114 3hzh_A Chemotaxis response reg 43.0 1E+02 0.0036 23.1 8.6 79 6-105 35-121 (157)
115 4dzz_A Plasmid partitioning pr 42.9 29 0.001 27.8 4.8 67 14-84 9-85 (206)
116 1o97_C Electron transferring f 42.7 56 0.0019 28.3 6.7 42 63-104 101-148 (264)
117 3la6_A Tyrosine-protein kinase 42.6 69 0.0024 27.8 7.4 37 8-46 92-130 (286)
118 3bgw_A DNAB-like replicative h 42.3 1.1E+02 0.0039 28.3 9.3 39 10-50 200-238 (444)
119 3to5_A CHEY homolog; alpha(5)b 42.3 84 0.0029 23.8 7.1 79 6-106 11-98 (134)
120 3h75_A Periplasmic sugar-bindi 41.6 1.2E+02 0.004 26.5 9.0 86 7-104 3-95 (350)
121 3cnb_A DNA-binding response re 41.4 99 0.0034 22.4 8.1 82 1-105 1-94 (143)
122 3c3m_A Response regulator rece 41.3 1E+02 0.0035 22.5 9.1 75 8-105 4-87 (138)
123 3u7q_A Nitrogenase molybdenum- 41.3 51 0.0017 31.4 6.7 81 8-102 349-442 (492)
124 1qgu_B Protein (nitrogenase mo 41.2 70 0.0024 30.6 7.8 83 8-101 361-465 (519)
125 2gkg_A Response regulator homo 41.0 92 0.0031 21.9 7.9 71 8-101 6-86 (127)
126 2b4a_A BH3024; flavodoxin-like 40.3 1E+02 0.0036 22.3 8.9 75 5-102 13-95 (138)
127 3q9s_A DNA-binding response re 39.8 1.6E+02 0.0055 24.4 9.4 75 8-105 38-118 (249)
128 1g5t_A COB(I)alamin adenosyltr 39.4 1.4E+02 0.005 24.4 8.4 38 6-45 27-64 (196)
129 3ih5_A Electron transfer flavo 39.3 35 0.0012 28.6 4.7 93 10-104 6-124 (217)
130 3dm5_A SRP54, signal recogniti 39.1 65 0.0022 30.2 7.0 40 8-49 101-140 (443)
131 3ezx_A MMCP 1, monomethylamine 38.6 45 0.0015 27.8 5.3 39 5-45 90-128 (215)
132 3l49_A ABC sugar (ribose) tran 38.2 1.7E+02 0.006 24.3 10.0 83 8-104 6-95 (291)
133 3fgn_A Dethiobiotin synthetase 38.1 1.8E+02 0.0061 24.7 9.2 97 6-106 24-168 (251)
134 3rfo_A Methionyl-tRNA formyltr 38.0 1.1E+02 0.0037 27.2 8.1 36 4-46 1-36 (317)
135 3jy6_A Transcriptional regulat 38.0 1.7E+02 0.0059 24.2 10.5 89 1-103 1-93 (276)
136 1i3c_A Response regulator RCP1 38.0 1.2E+02 0.0041 22.4 10.1 83 1-105 1-101 (149)
137 2g1u_A Hypothetical protein TM 38.0 27 0.00093 27.0 3.7 38 1-45 13-50 (155)
138 1mio_B Nitrogenase molybdenum 37.8 51 0.0017 30.9 6.1 83 8-101 313-409 (458)
139 3eag_A UDP-N-acetylmuramate:L- 37.8 27 0.00091 31.1 4.0 83 4-100 1-95 (326)
140 1sbz_A Probable aromatic acid 37.6 42 0.0014 27.7 4.9 36 8-46 1-37 (197)
141 3bh0_A DNAB-like replicative h 37.3 1.8E+02 0.0063 25.3 9.5 37 10-48 71-107 (315)
142 1x10_A Pyrrolidone-carboxylate 37.0 82 0.0028 26.2 6.6 61 8-80 1-66 (208)
143 1q57_A DNA primase/helicase; d 36.5 57 0.002 30.8 6.3 37 10-48 245-282 (503)
144 3auf_A Glycinamide ribonucleot 36.4 1.9E+02 0.0065 24.2 9.8 96 4-104 19-132 (229)
145 3hr8_A Protein RECA; alpha and 36.1 86 0.0029 28.4 7.1 74 10-85 64-150 (356)
146 2llh_A Nucleophosmin; nucleola 42.2 7.6 0.00026 26.7 0.0 32 300-331 23-54 (74)
147 3giu_A Pyrrolidone-carboxylate 35.9 26 0.00089 29.5 3.3 66 6-81 2-69 (215)
148 2ayx_A Sensor kinase protein R 35.6 1.6E+02 0.0055 24.5 8.6 76 7-105 129-211 (254)
149 2lpm_A Two-component response 35.5 19 0.00066 27.2 2.3 75 6-102 7-86 (123)
150 1dbw_A Transcriptional regulat 35.3 1.2E+02 0.0041 21.5 9.8 75 8-105 4-85 (126)
151 3kht_A Response regulator; PSI 35.2 1.3E+02 0.0044 21.9 9.6 79 6-105 4-91 (144)
152 2q5c_A NTRC family transcripti 35.2 42 0.0014 27.6 4.5 45 60-108 129-173 (196)
153 1t9k_A Probable methylthioribo 35.1 95 0.0032 28.0 7.2 20 86-105 252-271 (347)
154 4dad_A Putative pilus assembly 34.8 1.3E+02 0.0045 22.0 9.0 79 6-105 19-105 (146)
155 3h1g_A Chemotaxis protein CHEY 34.7 1.3E+02 0.0043 21.6 8.8 77 7-105 5-91 (129)
156 3crn_A Response regulator rece 34.6 1.3E+02 0.0043 21.7 8.9 76 7-105 3-85 (132)
157 3lua_A Response regulator rece 34.4 1.3E+02 0.0045 21.8 9.9 77 6-105 3-91 (140)
158 3ehd_A Uncharacterized conserv 34.2 59 0.002 25.9 5.1 95 5-104 2-106 (162)
159 3heb_A Response regulator rece 34.1 1.4E+02 0.0048 22.0 9.2 78 7-106 4-100 (152)
160 1p3y_1 MRSD protein; flavoprot 33.4 44 0.0015 27.5 4.3 39 5-46 6-44 (194)
161 3oy2_A Glycosyltransferase B73 33.3 56 0.0019 29.3 5.5 32 240-271 256-305 (413)
162 3qjg_A Epidermin biosynthesis 32.7 51 0.0017 26.7 4.5 36 8-46 6-41 (175)
163 2qs7_A Uncharacterized protein 32.7 46 0.0016 25.7 4.2 43 1-45 2-44 (144)
164 2yvk_A Methylthioribose-1-phos 32.4 93 0.0032 28.4 6.7 20 86-105 277-296 (374)
165 3lqk_A Dipicolinate synthase s 32.3 61 0.0021 26.8 5.0 40 7-49 7-47 (201)
166 3nhm_A Response regulator; pro 32.3 1.4E+02 0.0047 21.3 8.8 74 7-104 4-86 (133)
167 2yvq_A Carbamoyl-phosphate syn 31.9 64 0.0022 24.9 4.9 78 11-100 27-130 (143)
168 3n0r_A Response regulator; sig 31.9 97 0.0033 26.7 6.6 32 73-104 204-242 (286)
169 2zay_A Response regulator rece 31.8 1.5E+02 0.0051 21.6 9.1 78 5-105 6-92 (147)
170 1t5o_A EIF2BD, translation ini 31.7 88 0.003 28.3 6.4 20 86-105 249-268 (351)
171 3kcn_A Adenylate cyclase homol 31.7 1.6E+02 0.0053 21.8 8.9 76 7-105 4-86 (151)
172 1mvl_A PPC decarboxylase athal 30.8 63 0.0021 26.9 4.9 39 4-46 16-54 (209)
173 2ejb_A Probable aromatic acid 30.6 86 0.003 25.6 5.6 36 8-46 2-37 (189)
174 2qzj_A Two-component response 30.4 1.6E+02 0.0053 21.4 8.9 76 7-105 4-85 (136)
175 2hy5_B Intracellular sulfur ox 30.2 73 0.0025 24.4 4.9 42 1-45 1-44 (136)
176 3e61_A Putative transcriptiona 29.5 1.3E+02 0.0043 25.1 6.9 68 24-104 27-95 (277)
177 3eq2_A Probable two-component 29.5 2.1E+02 0.0071 25.6 8.7 76 7-105 5-87 (394)
178 2q6t_A DNAB replication FORK h 29.4 92 0.0032 28.8 6.4 37 10-48 203-240 (444)
179 3ilh_A Two component response 29.3 1.6E+02 0.0055 21.2 9.3 84 3-105 5-102 (146)
180 3q0i_A Methionyl-tRNA formyltr 29.2 84 0.0029 28.0 5.7 35 5-46 5-39 (318)
181 4hps_A Pyrrolidone-carboxylate 29.1 98 0.0033 26.1 5.8 64 6-81 22-90 (228)
182 2a0u_A Initiation factor 2B; S 29.0 94 0.0032 28.5 6.1 20 86-105 281-300 (383)
183 3bfv_A CAPA1, CAPB2, membrane 29.0 1.6E+02 0.0054 25.1 7.5 38 7-46 81-120 (271)
184 1qzu_A Hypothetical protein MD 29.0 63 0.0021 26.8 4.6 39 6-47 18-57 (206)
185 1kgs_A DRRD, DNA binding respo 29.0 2.2E+02 0.0075 22.6 10.1 76 8-106 3-85 (225)
186 1a2z_A Pyrrolidone carboxyl pe 28.9 1.5E+02 0.0052 24.7 7.0 61 9-81 3-68 (220)
187 3s40_A Diacylglycerol kinase; 28.6 2.2E+02 0.0075 24.7 8.4 37 8-46 11-48 (304)
188 3dzc_A UDP-N-acetylglucosamine 28.5 58 0.002 29.6 4.7 30 259-293 322-351 (396)
189 3ro0_A Pyrrolidone-carboxylate 28.1 99 0.0034 26.0 5.7 63 7-81 2-69 (223)
190 3g1w_A Sugar ABC transporter; 28.0 2.7E+02 0.0091 23.3 12.0 84 8-103 5-94 (305)
191 1u94_A RECA protein, recombina 27.6 2.1E+02 0.0073 25.6 8.3 73 10-85 66-152 (356)
192 1lss_A TRK system potassium up 27.3 79 0.0027 23.2 4.6 32 7-45 4-35 (140)
193 2qsj_A DNA-binding response re 27.2 1.9E+02 0.0064 21.3 7.5 75 7-104 3-87 (154)
194 2gwr_A DNA-binding response re 27.2 2.5E+02 0.0085 22.7 10.7 74 8-104 6-85 (238)
195 3mc3_A DSRE/DSRF-like family p 27.1 82 0.0028 23.8 4.7 37 8-46 16-55 (134)
196 3qhp_A Type 1 capsular polysac 27.1 53 0.0018 25.0 3.7 30 239-269 57-105 (166)
197 2r6a_A DNAB helicase, replicat 27.0 2.3E+02 0.0078 26.1 8.7 36 10-47 206-242 (454)
198 3bul_A Methionine synthase; tr 26.8 2E+02 0.0067 28.0 8.2 39 6-46 97-135 (579)
199 3rot_A ABC sugar transporter, 26.7 2.8E+02 0.0097 23.2 10.6 86 7-103 3-94 (297)
200 1w2w_B 5-methylthioribose-1-ph 26.7 57 0.002 26.8 3.8 61 27-105 22-95 (191)
201 4b4o_A Epimerase family protei 26.6 80 0.0028 27.0 5.1 32 8-45 1-32 (298)
202 4ds3_A Phosphoribosylglycinami 26.5 71 0.0024 26.6 4.4 30 74-103 36-65 (209)
203 3g0o_A 3-hydroxyisobutyrate de 25.8 31 0.0011 30.1 2.2 38 1-45 1-38 (303)
204 3iwt_A 178AA long hypothetical 25.8 89 0.003 24.8 4.9 67 5-84 13-91 (178)
205 1srr_A SPO0F, sporulation resp 25.4 1.8E+02 0.006 20.4 6.7 75 8-105 4-85 (124)
206 3tqr_A Phosphoribosylglycinami 25.4 2.3E+02 0.008 23.5 7.5 94 6-104 4-114 (215)
207 3cio_A ETK, tyrosine-protein k 25.3 2E+02 0.0069 24.9 7.5 37 8-46 104-142 (299)
208 3cz5_A Two-component response 25.2 2.1E+02 0.007 21.1 9.7 78 6-105 4-89 (153)
209 3mcu_A Dipicolinate synthase, 25.0 67 0.0023 26.7 4.0 39 7-48 5-44 (207)
210 1p6q_A CHEY2; chemotaxis, sign 24.8 1.8E+02 0.0063 20.4 7.2 76 6-104 5-90 (129)
211 1k68_A Phytochrome response re 24.8 1.9E+02 0.0065 20.5 10.0 76 8-105 3-95 (140)
212 3kjh_A CO dehydrogenase/acetyl 24.7 40 0.0014 27.9 2.6 37 8-46 1-37 (254)
213 2hy7_A Glucuronosyltransferase 24.5 59 0.002 29.6 4.0 35 7-45 14-51 (406)
214 2xdq_B Light-independent proto 24.5 65 0.0022 30.7 4.4 80 8-102 304-397 (511)
215 1id1_A Putative potassium chan 24.4 41 0.0014 25.8 2.5 32 7-45 3-34 (153)
216 2a9o_A Response regulator; ess 24.3 1.8E+02 0.0061 20.1 7.2 68 20-106 10-83 (120)
217 3ty2_A 5'-nucleotidase SURE; s 24.2 1E+02 0.0034 26.7 5.1 95 5-104 9-136 (261)
218 3s28_A Sucrose synthase 1; gly 24.2 1.2E+02 0.0043 30.7 6.6 31 72-102 405-437 (816)
219 2vyc_A Biodegradative arginine 24.0 2E+02 0.0067 28.8 8.0 64 23-104 20-94 (755)
220 2dzd_A Pyruvate carboxylase; b 23.9 1.7E+02 0.0057 27.0 7.1 38 1-46 1-38 (461)
221 3o74_A Fructose transport syst 23.9 3E+02 0.01 22.5 8.3 66 25-103 22-90 (272)
222 2pn1_A Carbamoylphosphate synt 23.5 88 0.003 27.2 4.9 33 6-45 3-36 (331)
223 1k66_A Phytochrome response re 23.4 2.1E+02 0.0072 20.6 9.3 78 6-105 5-102 (149)
224 2vsy_A XCC0866; transferase, g 23.4 1.2E+02 0.0042 28.5 6.2 88 238-328 434-555 (568)
225 3egc_A Putative ribose operon 23.4 3.2E+02 0.011 22.7 8.6 85 6-104 7-96 (291)
226 3aek_B Light-independent proto 23.1 1.1E+02 0.0039 29.1 5.8 81 9-101 282-373 (525)
227 2zts_A Putative uncharacterize 22.9 2E+02 0.0068 23.4 6.8 37 10-48 33-70 (251)
228 3io5_A Recombination and repai 22.9 2.1E+02 0.0073 25.6 7.1 74 9-84 30-121 (333)
229 3ksm_A ABC-type sugar transpor 22.6 3.1E+02 0.011 22.3 11.4 69 24-103 19-92 (276)
230 1efv_B Electron transfer flavo 22.2 84 0.0029 27.0 4.2 42 63-104 105-152 (255)
231 3uug_A Multiple sugar-binding 22.2 3.6E+02 0.012 22.8 11.5 84 7-103 3-92 (330)
232 3zxs_A Cryptochrome B, rscryb; 22.2 1.6E+02 0.0054 28.2 6.5 75 20-104 65-140 (522)
233 3a10_A Response regulator; pho 22.2 2E+02 0.0067 19.8 7.9 66 20-104 10-82 (116)
234 3mm4_A Histidine kinase homolo 22.0 3E+02 0.01 21.8 9.9 84 7-105 61-161 (206)
235 3tov_A Glycosyl transferase fa 21.8 1.8E+02 0.0061 25.8 6.6 89 8-104 186-289 (349)
236 3p9x_A Phosphoribosylglycinami 21.7 99 0.0034 25.8 4.4 43 62-104 16-61 (211)
237 1xhf_A DYE resistance, aerobic 21.6 2.1E+02 0.0072 19.9 9.0 75 8-105 4-84 (123)
238 3lac_A Pyrrolidone-carboxylate 21.5 1.2E+02 0.0041 25.3 5.0 62 8-81 2-68 (215)
239 2rjo_A Twin-arginine transloca 21.3 3.3E+02 0.011 23.2 8.3 66 25-103 25-96 (332)
240 3tqq_A Methionyl-tRNA formyltr 21.2 91 0.0031 27.7 4.4 33 7-46 2-34 (314)
241 2pju_A Propionate catabolism o 20.8 67 0.0023 27.0 3.2 39 61-103 142-180 (225)
242 3kcq_A Phosphoribosylglycinami 20.8 88 0.003 26.1 4.0 30 74-103 37-66 (215)
243 1efp_B ETF, protein (electron 20.7 82 0.0028 27.0 3.9 42 63-104 102-149 (252)
244 1uss_A Histone H1; DNA binding 20.6 88 0.003 22.1 3.3 16 313-328 23-38 (88)
245 2r6j_A Eugenol synthase 1; phe 20.6 89 0.0031 26.9 4.2 32 9-46 13-44 (318)
246 2ywr_A Phosphoribosylglycinami 20.4 3.6E+02 0.012 22.1 9.4 92 8-104 2-111 (216)
247 2oqr_A Sensory transduction pr 20.2 3.3E+02 0.011 21.6 7.9 76 8-106 5-86 (230)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=4.4e-55 Score=422.94 Aligned_cols=308 Identities=23% Similarity=0.343 Sum_probs=243.2
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC-----C------cc---------h-----------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT-----L------RG---------Q----------- 53 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~-----~------~~---------p----------- 53 (331)
..++||+++|+|++||++||++||+.|++||+.+.|||++++... . .. |
T Consensus 11 ~~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~ 90 (454)
T 3hbf_A 11 NNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGNPRE 90 (454)
T ss_dssp -CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCCCTTCCCCSCTTH
T ss_pred CCCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecCCCCCCCccccCChHH
Confidence 346899999999999999999999999999988999999985210 0 00 1
Q ss_pred ----HHHhhhHHHHHHHHHhhc--CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCC------
Q 039208 54 ----LALLNSPNLHKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGT------ 121 (331)
Q Consensus 54 ----~~~~~~~~l~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~------ 121 (331)
+++.+.+.+++.++++.+ ..++||||+|.|+.|+..+|+++|||++.|++++++.++.+++++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~~~~ 170 (454)
T 3hbf_A 91 PIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEV 170 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCCCcc
Confidence 234445567777776543 35899999999999999999999999999999999998877765432211
Q ss_pred ---CC-C-C--------CCCCcccc-----------------cc------CCCC---C--------CCCCCeEEeccCCC
Q 039208 122 ---TN-G-L--------KDPQMVLD-----------------IP------CVPY---G--------EQMPPLYCTGAILA 154 (331)
Q Consensus 122 ---~~-~-~--------~~l~~~~~-----------------~p------~~~~---~--------~~~p~~~~vGp~~~ 154 (331)
.. . + .+++..+. +. +|++ + ...|++++|||++.
T Consensus 171 ~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~vGPl~~ 250 (454)
T 3hbf_A 171 HDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNL 250 (454)
T ss_dssp TTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEECCCHHH
T ss_pred ccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEECCccc
Confidence 00 0 1 12221110 00 3333 1 23478999999975
Q ss_pred CCCCCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhh
Q 039208 155 ATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEAS 222 (331)
Q Consensus 155 ~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~ 222 (331)
.........+.+|.+|||.+++++|||||| +++.+|++++++|||+++...
T Consensus 251 ~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~----------------- 313 (454)
T 3hbf_A 251 TTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP----------------- 313 (454)
T ss_dssp HSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH-----------------
T ss_pred ccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc-----------------
Confidence 431111223567999999998899999999 899999999999999998751
Q ss_pred hhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccc
Q 039208 223 AELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDP 289 (331)
Q Consensus 223 ~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG 289 (331)
...+|++|.++++++++++ +|+||.+||+|++++ |+++|||||+||+++||+.||+++++.||+|
T Consensus 314 -~~~lp~~~~~~~~~~~~vv-~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~G 391 (454)
T 3hbf_A 314 -KEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391 (454)
T ss_dssp -HHHSCTTHHHHTTTTEEEE-SSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSE
T ss_pred -hhcCCHhHHhhcCCceEEE-eeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCee
Confidence 1348999999998888888 999999999999976 9999999999999999999999999978999
Q ss_pred eeehh------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 290 LTVAE------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 290 ~~l~~------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
+.++. +++|+ ||+++++++++|+++||||++|+++||+++++
T Consensus 392 v~l~~~~~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~~ 454 (454)
T 3hbf_A 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454 (454)
T ss_dssp EECGGGSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHTC
T ss_pred EEecCCCCCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhC
Confidence 99864 45552 99999999999999999999999999999864
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=2e-50 Score=394.53 Aligned_cols=325 Identities=29% Similarity=0.519 Sum_probs=232.6
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCC--CC----------c-c-----h--------
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFP--TL----------R-G-----Q-------- 53 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~--~~----------~-~-----p-------- 53 (331)
|+. .+++||+++|+|++||++||++||++|++| | |+|||++++.. .. . . |
T Consensus 1 M~~-~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~G--h~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 77 (480)
T 2vch_A 1 MEE-SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHG--LTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLS 77 (480)
T ss_dssp ------CCEEEEECCSCHHHHHHHHHHHHHHHHHHC--CEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCCCTTSC
T ss_pred CCC-CCCcEEEEecCcchhHHHHHHHHHHHHHhCCC--CEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCCCCCCC
Confidence 644 344799999999999999999999999998 9 99999988752 11 0 0 1
Q ss_pred ----H-------HHhhhHHHHHHHHHhhcCCCc-cEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccC-
Q 039208 54 ----L-------ALLNSPNLHKTLIIQSKTSNL-KTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYG- 120 (331)
Q Consensus 54 ----~-------~~~~~~~l~~~l~~l~~~~~~-d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~- 120 (331)
+ ...+.+.++++++++.+..++ ||||+|.++.|+..+|+++|||++.+++++++....+++++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (480)
T 2vch_A 78 SSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET 157 (480)
T ss_dssp TTCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhc
Confidence 0 112234445555544223578 999999999999999999999999999999887666554332110
Q ss_pred --------CCC----CC-----CCCCccc----------------------cccCCCC---C-----------CCCCCeE
Q 039208 121 --------TTN----GL-----KDPQMVL----------------------DIPCVPY---G-----------EQMPPLY 147 (331)
Q Consensus 121 --------~~~----~~-----~~l~~~~----------------------~~p~~~~---~-----------~~~p~~~ 147 (331)
... .+ .+++..+ .+.+|++ + +..++++
T Consensus 158 ~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~v~ 237 (480)
T 2vch_A 158 VSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVY 237 (480)
T ss_dssp CCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCEE
T ss_pred CCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCcEE
Confidence 000 00 1111100 0012222 1 0136899
Q ss_pred EeccCCCCCCCCC-CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhh
Q 039208 148 CTGAILAATTSDN-KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTL 214 (331)
Q Consensus 148 ~vGp~~~~~~~~~-~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~ 214 (331)
+|||++....... ...+.+|.+|||++++++|||||| ++++||++++++|||+++.....+ ...++
T Consensus 238 ~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~-~~~~~ 316 (480)
T 2vch_A 238 PVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIA-NSSYF 316 (480)
T ss_dssp ECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSST-TTTTT
T ss_pred EEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccc-ccccc
Confidence 9999986531100 234678999999998899999999 899999999999999998752100 00000
Q ss_pred hhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHH
Q 039208 215 TVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAF 281 (331)
Q Consensus 215 ~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~ 281 (331)
... .+.+....+|++|.+|++++|+++.+|+||.+||+|++++ |+++|||||+||+++||+.||++
T Consensus 317 ~~~-~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~ 395 (480)
T 2vch_A 317 DSH-SQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVL 395 (480)
T ss_dssp CC---CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHH
T ss_pred ccc-cccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchHHHHH
Confidence 000 0001113589999999999999996799999999999986 99999999999999999999999
Q ss_pred HHhhhccceeehh---------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 282 LVEKIRDPLTVAE---------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 282 v~~~lGvG~~l~~---------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
+++++|+|+.+.. +++|+ ||+++++++++|+++||||++++++||++++
T Consensus 396 l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~~~ 468 (480)
T 2vch_A 396 LSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWK 468 (480)
T ss_dssp HHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHhCeEEEeecccCCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8644899998841 55662 9999999999999999999999999999886
No 3
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=7.1e-48 Score=374.26 Aligned_cols=312 Identities=21% Similarity=0.380 Sum_probs=226.1
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC--------C----Ccc---------h------
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP--------T----LRG---------Q------ 53 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~--------~----~~~---------p------ 53 (331)
|+++.+++||+++|+|++||++||++||++|++||.++.||+++++.. . ... |
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~~glp~~~~~~ 80 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFA 80 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECCCCCCTTCCCC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCCCCCCCccccc
Confidence 888888899999999999999999999999999972255687876310 0 000 1
Q ss_pred ---------HHHhhhHHHHHHHHHhhc--CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcccc----
Q 039208 54 ---------LALLNSPNLHKTLIIQSK--TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNT---- 118 (331)
Q Consensus 54 ---------~~~~~~~~l~~~l~~l~~--~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~---- 118 (331)
+.+.+.+.++++++++.+ ..++||||+|.++.|+..+|+++|||++.+++++++....+.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c1x_A 81 GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKI 160 (456)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHH
T ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhcc
Confidence 122233455566665542 36899999999999999999999999999999988766554322110
Q ss_pred c-----C---C----CCC-----CCCCCccc------------------ccc------CCCC---C--------CCCCCe
Q 039208 119 Y-----G---T----TNG-----LKDPQMVL------------------DIP------CVPY---G--------EQMPPL 146 (331)
Q Consensus 119 ~-----~---~----~~~-----~~~l~~~~------------------~~p------~~~~---~--------~~~p~~ 146 (331)
. . . ... +.+++..+ .++ +|++ + ...|++
T Consensus 161 ~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~~ 240 (456)
T 2c1x_A 161 GVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240 (456)
T ss_dssp CSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCE
T ss_pred CCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCCE
Confidence 0 0 0 000 01111100 000 2333 1 113689
Q ss_pred EEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhh
Q 039208 147 YCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTL 214 (331)
Q Consensus 147 ~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~ 214 (331)
++|||++..........+.+|.+|||.+++++|||||| +++++|++++++|||+++...
T Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~--------- 311 (456)
T 2c1x_A 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA--------- 311 (456)
T ss_dssp EECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG---------
T ss_pred EEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc---------
Confidence 99999975431100112356999999988899999999 789999999999999998641
Q ss_pred hhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHH
Q 039208 215 TVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAF 281 (331)
Q Consensus 215 ~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~ 281 (331)
...+|++|.+++++++.++ +|+||.++|+|++++ |+++|||||+||+++||+.||++
T Consensus 312 ---------~~~l~~~~~~~~~~~~~v~-~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~ 381 (456)
T 2c1x_A 312 ---------RVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRM 381 (456)
T ss_dssp ---------GGGSCTTHHHHHTTTEEEE-SCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHH
T ss_pred ---------hhhCCHHHHhhcCCceEEe-cCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHH
Confidence 1248889988887777777 999999999999876 99999999999999999999999
Q ss_pred HHhhhccceeehh------------hHHHH---------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 282 LVEKIRDPLTVAE------------RRVIE---------GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 282 v~~~lGvG~~l~~------------~~lm~---------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
+++.||+|+.+.. +++|+ ||+++++.+++|+++||||++|+++||+++++
T Consensus 382 l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 382 VEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452 (456)
T ss_dssp HHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTS
T ss_pred HHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 9997799999963 44552 99999999999999999999999999998864
No 4
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=8.4e-48 Score=374.49 Aligned_cols=307 Identities=31% Similarity=0.543 Sum_probs=233.0
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCc-------------c-------h-----
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPTLR-------------G-------Q----- 53 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~-------------~-------p----- 53 (331)
|++..+++||+++|+|++||++||++||++|++| | |+|||++++..... . |
T Consensus 3 ~~~~~~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG--~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~ 80 (463)
T 2acv_A 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKN--LYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPP 80 (463)
T ss_dssp CHHHHHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTT--EEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCC
T ss_pred cccCCCCCEEEEEcCcccchHHHHHHHHHHHHhcCCC--cEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCCCCC
Confidence 5666677899999999999999999999999999 9 99999998764210 0 1
Q ss_pred -H-------------HHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhccccc
Q 039208 54 -L-------------ALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLPNTY 119 (331)
Q Consensus 54 -~-------------~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~ 119 (331)
. +..+.+.++++++++ +..++||||+|.++.|+..+|+++|||++.+++++++....+++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 159 (463)
T 2acv_A 81 PQELLKSPEFYILTFLESLIPHVKATIKTI-LSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159 (463)
T ss_dssp CGGGGGSHHHHHHHHHHHTHHHHHHHHHHH-CCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSC
T ss_pred cccccCCccHHHHHHHHhhhHHHHHHHHhc-cCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhc
Confidence 0 111223344444443 2368999999999999999999999999999999998877766655321
Q ss_pred C-------CC---C----CC-C-----CCCccc---------------------cccCCCCC-----------C-C--CC
Q 039208 120 G-------TT---N----GL-K-----DPQMVL---------------------DIPCVPYG-----------E-Q--MP 144 (331)
Q Consensus 120 ~-------~~---~----~~-~-----~l~~~~---------------------~~p~~~~~-----------~-~--~p 144 (331)
. .. . .+ . +++..+ .+.+|++. . . .+
T Consensus 160 ~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~ 239 (463)
T 2acv_A 160 IEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239 (463)
T ss_dssp TTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSC
T ss_pred ccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCC
Confidence 0 00 0 11 0 111000 00123321 0 1 56
Q ss_pred CeEEeccCCCCCCCCC-C---CCcchhhhhhccCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeCCCCc
Q 039208 145 PLYCTGAILAATTSDN-K---NDDHTCFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLFPPLE 207 (331)
Q Consensus 145 ~~~~vGp~~~~~~~~~-~---~~~~~~~~wLd~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~~~~~ 207 (331)
++++|||++....... . ..+.+|.+|||.+++++|||||| +++++|++++++|||+++..
T Consensus 240 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--- 316 (463)
T 2acv_A 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--- 316 (463)
T ss_dssp CEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC---
T ss_pred cEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC---
Confidence 8999999986431010 1 13467999999998899999998 78999999999999999863
Q ss_pred hhhhhhhhhhchhhhhhccCchhHHhhh--cCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccc
Q 039208 208 DEFRQTLTVADAEASAELFLPEGFVERT--RDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSN 272 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~lp~~f~~~~--~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~ 272 (331)
...+|++|.+++ +++++++ +|+||.+||+|++++ |+++|||||+||++
T Consensus 317 ----------------~~~l~~~~~~~~~~~~~~~v~-~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~ 379 (463)
T 2acv_A 317 ----------------KKVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIY 379 (463)
T ss_dssp ----------------GGGSCTTHHHHHHHHCSEEEE-SSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCS
T ss_pred ----------------cccCChhHHHhhccCCCEEEE-ccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccch
Confidence 013788888887 7778777 799999999999986 99999999999999
Q ss_pred cchhhhHHHHHhhhccceee-h-------h----------hHHHH-------hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 273 GDQMVNMAFLVEKIRDPLTV-A-------E----------RRVIE-------GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 273 ~DQ~~na~~v~~~lGvG~~l-~-------~----------~~lm~-------~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
+||+.||+++++++|+|+.+ + . +++|+ ||+++++.+++|+++||||++|+++||+
T Consensus 380 ~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~ 459 (463)
T 2acv_A 380 AEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459 (463)
T ss_dssp TTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999964448999988 2 2 44553 9999999999999999999999999999
Q ss_pred HHh
Q 039208 328 SFR 330 (331)
Q Consensus 328 ~~~ 330 (331)
+++
T Consensus 460 ~~~ 462 (463)
T 2acv_A 460 DIT 462 (463)
T ss_dssp HHH
T ss_pred Hhc
Confidence 885
No 5
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.9e-47 Score=373.81 Aligned_cols=309 Identities=21% Similarity=0.361 Sum_probs=226.5
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC----C-----------cc---------hH-------
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT----L-----------RG---------QL------- 54 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~----~-----------~~---------p~------- 54 (331)
+++||+++|+|++||++||++||++|++|| |+|||++++.+. . .. |-
T Consensus 7 ~~~~vl~~p~p~~GHi~P~l~La~~L~~rG--~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~~~~~~~ 84 (482)
T 2pq6_A 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRG--FHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDV 84 (482)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEEEEHHHHHHHC------------CEEEEEECCCCC--------
T ss_pred CCCEEEEecCccchhHHHHHHHHHHHHhCC--CeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCcccccCc
Confidence 457999999999999999999999999999 999999876321 0 00 10
Q ss_pred -------H----HhhhHHHHHHHHHhhc---CCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhcc----
Q 039208 55 -------A----LLNSPNLHKTLIIQSK---TSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYLP---- 116 (331)
Q Consensus 55 -------~----~~~~~~l~~~l~~l~~---~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~---- 116 (331)
+ +.+.+.++++++.+.+ ..++||||+|.++.|+..+|+++|||++.+++++++....+.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (482)
T 2pq6_A 85 SQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVE 164 (482)
T ss_dssp -CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHh
Confidence 1 1233444555555432 258999999999999999999999999999999987765543221
Q ss_pred -----ccc---------CCCC-CC--------CCCCcccc------------------cc------CCCC---C------
Q 039208 117 -----NTY---------GTTN-GL--------KDPQMVLD------------------IP------CVPY---G------ 140 (331)
Q Consensus 117 -----~~~---------~~~~-~~--------~~l~~~~~------------------~p------~~~~---~------ 140 (331)
... +... .+ .+++.... .. +|++ +
T Consensus 165 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~~ 244 (482)
T 2pq6_A 165 RGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244 (482)
T ss_dssp TTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHH
T ss_pred cCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHHH
Confidence 110 0000 00 01111100 00 2222 1
Q ss_pred --CCCCCeEEeccCCCC-CCC-------C--CC--CCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcC
Q 039208 141 --EQMPPLYCTGAILAA-TTS-------D--NK--NDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSG 194 (331)
Q Consensus 141 --~~~p~~~~vGp~~~~-~~~-------~--~~--~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~ 194 (331)
...+++++|||++.. ... . .. +.+.+|.+|||++++++|||||| +++.+|++++
T Consensus 245 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~ 324 (482)
T 2pq6_A 245 LSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCK 324 (482)
T ss_dssp HHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHHhcC
Confidence 123789999999753 111 0 00 12456899999998899999999 7999999999
Q ss_pred CcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-------------chh
Q 039208 195 AAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVR 261 (331)
Q Consensus 195 ~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~ 261 (331)
++|||+++..... .....+|++|.+++++++.++ +|+||.+||+|++++ |++
T Consensus 325 ~~~l~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~v~-~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~ 389 (482)
T 2pq6_A 325 KSFLWIIRPDLVI--------------GGSVIFSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESIC 389 (482)
T ss_dssp CEEEEECCGGGST--------------TTGGGSCHHHHHHHTTTEEEE-SCCCHHHHHTSTTEEEEEECCCHHHHHHHHH
T ss_pred CcEEEEEcCCccc--------------cccccCcHhHHHhcCCCEEEE-eecCHHHHhcCCCCCEEEecCCcchHHHHHH
Confidence 9999999864210 001238899999887777766 899999999999985 999
Q ss_pred cCCcEeecccccchhhhHHHHHhhhccceeehh-----------hHHHH---------hHHHHHHHHHHHHhcCCChHHH
Q 039208 262 TGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE-----------RRVIE---------GIRAPKEQAVGALSEGGRSLAV 321 (331)
Q Consensus 262 ~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~-----------~~lm~---------~a~~l~~~~~~a~~~ggss~~~ 321 (331)
+|||||+||+++||+.||+++++++|+|+.++. +++|+ ||+++++.+++|+++||||++|
T Consensus 390 ~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~ 469 (482)
T 2pq6_A 390 AGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMN 469 (482)
T ss_dssp HTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred cCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999854899999862 44442 9999999999999999999999
Q ss_pred HHHHHHHHhC
Q 039208 322 VAELAESFRK 331 (331)
Q Consensus 322 l~~~v~~~~~ 331 (331)
+++||+++++
T Consensus 470 l~~~v~~~~~ 479 (482)
T 2pq6_A 470 LNKVIKDVLL 479 (482)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 6
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=3e-34 Score=272.26 Aligned_cols=272 Identities=15% Similarity=0.157 Sum_probs=177.7
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------------------h----------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------------------Q---------- 53 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------------------p---------- 53 (331)
+.+.|||+|+++|++||++|+++||++|++|| |+|||++++...... +
T Consensus 19 ~~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rG--h~Vt~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (400)
T 4amg_A 19 YFQSMRALFITSPGLSHILPTVPLAQALRALG--HEVRYATGGDIRAVAEAGLCAVDVSPGVNYAKLFVPDDTDVTDPMH 96 (400)
T ss_dssp --CCCEEEEECCSSHHHHGGGHHHHHHHHHTT--CEEEEEECSSTHHHHTTTCEEEESSTTCCSHHHHSCCC--------
T ss_pred CCCCCeEEEECCCchhHHHHHHHHHHHHHHCC--CEEEEEeCcchhhHHhcCCeeEecCCchhHhhhccccccccccccc
Confidence 45678999999999999999999999999999 999999976432110 0
Q ss_pred -------HHH-----hhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHh-----hcc
Q 039208 54 -------LAL-----LNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVL-----YLP 116 (331)
Q Consensus 54 -------~~~-----~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~-----~~~ 116 (331)
.+. .....+.+++ ++++..+||+||+|.+..|+..+|+++|||++.+..+......... .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~ 175 (400)
T 4amg_A 97 SEGLGEGFFAEMFARVSAVAVDGAL-RTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIRRAMS 175 (400)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHHHHTH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHHHHHHH
Confidence 000 0111111221 2234558999999999999999999999999998765433221111 000
Q ss_pred cccCCC-CCCCCCCccc--ccc-----CCCCCCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH----
Q 039208 117 NTYGTT-NGLKDPQMVL--DIP-----CVPYGEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF---- 184 (331)
Q Consensus 117 ~~~~~~-~~~~~l~~~~--~~p-----~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf---- 184 (331)
...... .......... ..+ ..+.....+..+++.+.... ....+.+|++.++++++|||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~v~vs~Gs~~ 248 (400)
T 4amg_A 176 KDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN-------GGAVLPDWLPPAAGRRRIAVTLGSID 248 (400)
T ss_dssp HHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC-------CCEECCTTCSCCTTCCEEEECCCSCC
T ss_pred HHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCccccccc-------ccccCcccccccCCCcEEEEeCCccc
Confidence 000000 0000000000 000 00001112334444433222 1234567999988899999998
Q ss_pred ----------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcC
Q 039208 185 ----------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSH 254 (331)
Q Consensus 185 ----------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H 254 (331)
++++++++++.+++|..+.... +....+| .|+.+.+|+||.++|+|
T Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~---------------~~~~~~~---------~~v~~~~~~p~~~lL~~ 304 (400)
T 4amg_A 249 ALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL---------------ALLGELP---------ANVRVVEWIPLGALLET 304 (400)
T ss_dssp --CCSSSTTHHHHHHGGGSSSEEEEECCTTCC---------------CCCCCCC---------TTEEEECCCCHHHHHTT
T ss_pred ccCccHHHHHHHHHHhhccCceEEEEecCccc---------------cccccCC---------CCEEEEeecCHHHHhhh
Confidence 7889999999999999876521 1122344 46677799999999999
Q ss_pred cccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh--------hHHHH------hHHHHHHHHH
Q 039208 255 DSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE--------RRVIE------GIRAPKEQAV 309 (331)
Q Consensus 255 ~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~--------~~lm~------~a~~l~~~~~ 309 (331)
+++. |+++|||||++|+++||+.||+++++ +|+|+.++. +++|+ ||++++++++
T Consensus 305 ~~~~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~-~G~g~~l~~~~~~~~al~~lL~d~~~r~~a~~l~~~~~ 383 (400)
T 4amg_A 305 CDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG-LGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS 383 (400)
T ss_dssp CSEEEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHH-HTSEEECCTTTCSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhheeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHH-CCCEEEcCCCCchHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 9987 99999999999999999999999999 599999975 56665 7777776665
Q ss_pred H
Q 039208 310 G 310 (331)
Q Consensus 310 ~ 310 (331)
+
T Consensus 384 ~ 384 (400)
T 4amg_A 384 E 384 (400)
T ss_dssp T
T ss_pred c
Confidence 4
No 7
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.97 E-value=1.2e-29 Score=243.21 Aligned_cols=256 Identities=15% Similarity=0.086 Sum_probs=171.0
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h--H-----------------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q--L----------------- 54 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p--~----------------- 54 (331)
++.++||+++++|++||++|+++||++|+++| |+||+++++...... | +
T Consensus 9 ~m~~~~Il~~~~~~~GHv~p~l~la~~L~~~G--h~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
T 2iya_A 9 SVTPRHISFFNIPGHGHVNPSLGIVQELVARG--HRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESA 86 (424)
T ss_dssp --CCCEEEEECCSCHHHHHHHHHHHHHHHHTT--CEEEEEECGGGHHHHHHHTCEEEECCCCSCCTTCTTCCCCSSHHHH
T ss_pred CcccceEEEEeCCCCcccchHHHHHHHHHHCC--CeEEEEeCHHHHHHHHhCCCEEEecCccccccccchhhcchhHHHH
Confidence 34567999999999999999999999999999 999999987542210 0 0
Q ss_pred HHhhhH---HHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHHHHhhc----ccccC-------
Q 039208 55 ALLNSP---NLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALAQVLYL----PNTYG------- 120 (331)
Q Consensus 55 ~~~~~~---~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~----~~~~~------- 120 (331)
+..... ...+.+.++++..+|||||+|.+..|+..+|+++|||++.+++++.......... +.+.+
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
T 2iya_A 87 MGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAA 166 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccccccccccccc
Confidence 000001 1112233344567899999999988999999999999999987653111000000 00000
Q ss_pred ----------------------CCCC-C--CCCC----------ccccccCCC-C----CCCCCCeEEeccCCCCCCCCC
Q 039208 121 ----------------------TTNG-L--KDPQ----------MVLDIPCVP-Y----GEQMPPLYCTGAILAATTSDN 160 (331)
Q Consensus 121 ----------------------~~~~-~--~~l~----------~~~~~p~~~-~----~~~~p~~~~vGp~~~~~~~~~ 160 (331)
.... + .+++ +..-..+.+ + ....+++++|||+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~~~~~---- 242 (424)
T 2iya_A 167 PAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDR---- 242 (424)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCCCCCC----
T ss_pred ccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCCCCCc----
Confidence 0000 0 0000 000000111 1 11345799999975422
Q ss_pred CCCcchhhhhhccCCCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCc
Q 039208 161 KNDDHTCFSWLDKQPSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLP 228 (331)
Q Consensus 161 ~~~~~~~~~wLd~~~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 228 (331)
.+..+|++.++++++|||+| ++++++++++.+|+|.++.... .+....+|
T Consensus 243 ----~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~--------------~~~~~~~~ 304 (424)
T 2iya_A 243 ----SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVD--------------PADLGEVP 304 (424)
T ss_dssp ----GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSC--------------GGGGCSCC
T ss_pred ----ccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCC--------------hHHhccCC
Confidence 12347888766789999998 6788888888999998876421 01111233
Q ss_pred hhHHhhhcCCCcccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 229 EGFVERTRDWGLPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 229 ~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.|+.+.+|+||.++|+|+++. |+++|||+|++|.+.||+.||+++++ +|+|+.+.
T Consensus 305 ---------~~v~~~~~~~~~~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~ 370 (424)
T 2iya_A 305 ---------PNVEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRHIP 370 (424)
T ss_dssp ---------TTEEEESSCCHHHHHTTCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH-TTSEEECC
T ss_pred ---------CCeEEecCCCHHHHHhhCCEEEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHH-CCCEEEcC
Confidence 466677999999999999986 99999999999999999999999998 69999886
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.95 E-value=1.3e-27 Score=228.79 Aligned_cols=251 Identities=13% Similarity=0.061 Sum_probs=169.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-----HHH------------hhhH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-----LAL------------LNSP 60 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-----~~~------------~~~~ 60 (331)
|||+|++.++.||++|+++||++|+++| |+|||+++....... | .+. .+..
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~G--h~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLG--ADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTE 78 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTT--CEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHcCCeeeeCCCCHHHHhhcccccchHHHHHHHHH
Confidence 5899999999999999999999999999 999999987532211 1 110 0111
Q ss_pred HHHHHHHHhhc-CCCccEEEEcC-cchh--HHHHHHHcCCCeEEEecccHHHH------------------H---HH---
Q 039208 61 NLHKTLIIQSK-TSNLKTLIIDF-FHKV--ALQVSCSLNIPTYLFYASSASAL------------------A---QV--- 112 (331)
Q Consensus 61 ~l~~~l~~l~~-~~~~d~vI~D~-~~~~--~~~vA~~~giP~v~~~~~~~~~~------------------~---~~--- 112 (331)
.+.+.++++.+ ..+||+||+|. +..| +..+|+++|||++.++++++... . ..
T Consensus 79 ~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~ 158 (415)
T 1iir_A 79 AIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERN 158 (415)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccchHHHHHHHHHHH
Confidence 12333444432 56899999998 6778 89999999999999987762200 0 00
Q ss_pred h------hcc---cccCCCCCCCCCCcc-------ccccCCC---CC---CCCCCeEEeccCCCCCCCCCCCCcchhhhh
Q 039208 113 L------YLP---NTYGTTNGLKDPQMV-------LDIPCVP---YG---EQMPPLYCTGAILAATTSDNKNDDHTCFSW 170 (331)
Q Consensus 113 ~------~~~---~~~~~~~~~~~l~~~-------~~~p~~~---~~---~~~p~~~~vGp~~~~~~~~~~~~~~~~~~w 170 (331)
. ..+ ...... .+...+.. ..+ ++. ++ ....++++|||++.... ...+.++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~vG~~~~~~~---~~~~~~~~~~ 233 (415)
T 1iir_A 159 NQSAYQRYGGLLNSHRDAI-GLPPVEDIFTFGYTDHPW-VAADPVLAPLQPTDLDAVQTGAWILPDE---RPLSPELAAF 233 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCCCHHHHHHCSSCE-ECSCTTTSCCCCCSSCCEECCCCCCCCC---CCCCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHc-CCCCCCccccccCCCCEE-EeeChhhcCCCcccCCeEeeCCCccCcc---cCCCHHHHHH
Confidence 0 000 000000 01100000 000 111 01 11117899999876431 2346789999
Q ss_pred hccCCCCeEEEeeH-----------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCC
Q 039208 171 LDKQPSHCIVFLCF-----------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWG 239 (331)
Q Consensus 171 Ld~~~~~~vVyvsf-----------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~ 239 (331)
|++++ ++||||| .++++|++++.+|+|+.+.... + ...+| .|
T Consensus 234 l~~~~--~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~---------------~-~~~~~---------~~ 286 (415)
T 1iir_A 234 LDAGP--PPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADL---------------V-LPDDG---------AD 286 (415)
T ss_dssp HHTSS--CCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTC---------------C-CSSCG---------GG
T ss_pred HhhCC--CeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCcc---------------c-ccCCC---------CC
Confidence 98753 7899998 4778999999999998875411 0 11133 35
Q ss_pred cccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 240 LPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 240 ~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
+.+.+|+||.++|++.++. |+++|||+|++|+++||+.||+++++ +|+|+.++
T Consensus 287 v~~~~~~~~~~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~ 350 (415)
T 1iir_A 287 CFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAE-LGVGVAHD 350 (415)
T ss_dssp EEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH-HTSEEECS
T ss_pred EEEeCcCChHHHHhhCCEEEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHHHH-CCCcccCC
Confidence 6677999999999877775 99999999999999999999999988 69999885
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.94 E-value=1.9e-26 Score=220.64 Aligned_cols=252 Identities=13% Similarity=0.047 Sum_probs=167.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h--H---HH---------hhh----
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q--L---AL---------LNS---- 59 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p--~---~~---------~~~---- 59 (331)
|||++++.++.||++|+++||++|+++| |+|||+++....... + . .. ...
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~G--h~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALG--VQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAA 78 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTT--CEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCC--CeEEEEeCHHHHHHHHHcCCeeeecCCCHHHHHhhccccchhHHHHHHHH
Confidence 5899999999999999999999999999 999999986432211 0 0 00 000
Q ss_pred HHHHHHHHHhhc-CCCccEEEEcC-cchh--HHHHHHHcCCCeEEEecccHHHHHHHh----------------------
Q 039208 60 PNLHKTLIIQSK-TSNLKTLIIDF-FHKV--ALQVSCSLNIPTYLFYASSASALAQVL---------------------- 113 (331)
Q Consensus 60 ~~l~~~l~~l~~-~~~~d~vI~D~-~~~~--~~~vA~~~giP~v~~~~~~~~~~~~~~---------------------- 113 (331)
..+.++++.+.+ ..+||+||+|. +..| +..+|+++|||++.+++++......+.
T Consensus 79 ~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~p~~~~~~~~~~r~~n~~~~~~~ 158 (416)
T 1rrv_A 79 MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEER 158 (416)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcccCCCCCCCCCchHHHHHHHHHHH
Confidence 111233333321 46899999997 4556 888999999999998776521100000
Q ss_pred -------hcc---cccCCCCCCCCCCcc-------ccc-cCCC-CC--CCCCCeEEeccCCCCCCCCCCCCcchhhhhhc
Q 039208 114 -------YLP---NTYGTTNGLKDPQMV-------LDI-PCVP-YG--EQMPPLYCTGAILAATTSDNKNDDHTCFSWLD 172 (331)
Q Consensus 114 -------~~~---~~~~~~~~~~~l~~~-------~~~-p~~~-~~--~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd 172 (331)
..+ ...... .+...+.. ..+ .+.+ ++ ....++++|||++.... ...+.++.+||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~vG~~~~~~~---~~~~~~~~~~l~ 234 (416)
T 1rrv_A 159 AARFADRYGPTLNRRRAEI-GLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDE---RPLPPELEAFLA 234 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCC---CCCCHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHc-CCCCCCchhhhccCCCeEEccCccccCCCCCCCeeeECCCccCcc---CCCCHHHHHHHh
Confidence 000 000000 00000000 000 0001 11 11127899999876431 234678899998
Q ss_pred cCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCC
Q 039208 173 KQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWG 239 (331)
Q Consensus 173 ~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~ 239 (331)
++ +++|||+| ++++++++++.+|+|+.+.... + ...+| .|
T Consensus 235 ~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~---------------~-~~~~~---------~~ 287 (416)
T 1rrv_A 235 AG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL---------------V-LPDDR---------DD 287 (416)
T ss_dssp SS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC---------------C-CSCCC---------TT
T ss_pred cC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc---------------c-ccCCC---------CC
Confidence 75 37899998 6888999999999999876411 0 11133 46
Q ss_pred cccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 240 LPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 240 ~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
+.+.+|+||.++|++.++. |+++|||+|++|++.||+.||+++++ +|+|+.+.
T Consensus 288 v~~~~~~~~~~ll~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~ 351 (416)
T 1rrv_A 288 CFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAA-LGIGVAHD 351 (416)
T ss_dssp EEEESSCCHHHHGGGSSEEEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHH-HTSEEECS
T ss_pred EEEeccCChHHHhccCCEEEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHH-CCCccCCC
Confidence 6677999999999877776 99999999999999999999999998 69999885
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.94 E-value=1.2e-25 Score=214.39 Aligned_cols=258 Identities=13% Similarity=0.056 Sum_probs=167.4
Q ss_pred CCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-------------------
Q 039208 3 ESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q------------------- 53 (331)
Q Consensus 3 ~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p------------------- 53 (331)
|...++||+|++.++.||++|++.|+++|.++| |+|+++++....... +
T Consensus 16 ~~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~G--h~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
T 3rsc_A 16 EGRHMAHLLIVNVASHGLILPTLTVVTELVRRG--HRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGV 93 (415)
T ss_dssp ---CCCEEEEECCSCHHHHGGGHHHHHHHHHTT--CEEEEEECGGGHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCH
T ss_pred CcccCCEEEEEeCCCccccccHHHHHHHHHHCC--CEEEEEeCHHHHHHHHhcCCEEEeccccccccccchhhccccHHH
Confidence 455678999999999999999999999999999 999999975433211 0
Q ss_pred HHHh-hhHH---HHHHHHHhhcCCCccEEEEc-CcchhHHHHHHHcCCCeEEEecccHHH--------HHHHh--hcc--
Q 039208 54 LALL-NSPN---LHKTLIIQSKTSNLKTLIID-FFHKVALQVSCSLNIPTYLFYASSASA--------LAQVL--YLP-- 116 (331)
Q Consensus 54 ~~~~-~~~~---l~~~l~~l~~~~~~d~vI~D-~~~~~~~~vA~~~giP~v~~~~~~~~~--------~~~~~--~~~-- 116 (331)
.+.. .... +...+.++++..+||+||+| .+..++..+|+++|||++.+.+..... ..... ..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (415)
T 3rsc_A 94 RPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGTIDPLD 173 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCccccccccccccccCChhh
Confidence 0000 1111 11223334467799999999 777889999999999999987443210 00000 000
Q ss_pred ---------cc-cCCCCC-----CCCCC-cc-c-ccc--CCCC-CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCC
Q 039208 117 ---------NT-YGTTNG-----LKDPQ-MV-L-DIP--CVPY-GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQP 175 (331)
Q Consensus 117 ---------~~-~~~~~~-----~~~l~-~~-~-~~p--~~~~-~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~ 175 (331)
.+ .....+ +...+ +. + ..+ .... .....++.++||..... .+..+|+...+
T Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~--------~~~~~~~~~~~ 245 (415)
T 3rsc_A 174 LPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR--------RFLGEWTRPAD 245 (415)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCC--------GGGCCCCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCc--------ccCcCccccCC
Confidence 00 000000 00000 00 0 000 0000 11234688999876432 23445766556
Q ss_pred CCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccc
Q 039208 176 SHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVK 243 (331)
Q Consensus 176 ~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~ 243 (331)
++++||+++ ++++++++.+.+++|..++... .+....+| .++.+.
T Consensus 246 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~--------------~~~l~~~~---------~~v~~~ 302 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVD--------------PAALGDLP---------PNVEAH 302 (415)
T ss_dssp CCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSC--------------GGGGCCCC---------TTEEEE
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCC--------------hHHhcCCC---------CcEEEE
Confidence 678999997 6788888888999998875421 01112233 466677
Q ss_pred cccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 244 SWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 244 ~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
+|+||.++|+++++. |+++|+|+|++|...||+.||+++++. |+|+.+..
T Consensus 303 ~~~~~~~ll~~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~-g~g~~~~~ 363 (415)
T 3rsc_A 303 RWVPHVKVLEQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQL-GLGAVLPG 363 (415)
T ss_dssp SCCCHHHHHHHEEEEEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHH-TCEEECCG
T ss_pred ecCCHHHHHhhCCEEEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHc-CCEEEccc
Confidence 999999999998886 999999999999999999999999995 99998853
No 11
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.93 E-value=9.2e-25 Score=206.67 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=179.7
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-------------------HHH
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-------------------LAL 56 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-------------------~~~ 56 (331)
.++||+|++.++.||++|++.|+++|+++| |+|+++++....... + .+.
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~G--heV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRG--HRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhCC--CEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHHHH
Confidence 346999999999999999999999999999 999999975322110 0 000
Q ss_pred h-hhHHH---HHHHHHhhcCCCccEEEEc-CcchhHHHHHHHcCCCeEEEecccHHHH--------H-------------
Q 039208 57 L-NSPNL---HKTLIIQSKTSNLKTLIID-FFHKVALQVSCSLNIPTYLFYASSASAL--------A------------- 110 (331)
Q Consensus 57 ~-~~~~l---~~~l~~l~~~~~~d~vI~D-~~~~~~~~vA~~~giP~v~~~~~~~~~~--------~------------- 110 (331)
. ..... ...+.++++..+||+||+| .+..++..+|+++|||++.+.++..... .
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T 3ia7_A 81 LVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPADVEA 160 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChhhHHH
Confidence 0 11111 1122333456799999999 7888999999999999999864432100 0
Q ss_pred HHhhcccc-cCCCCC-----CCCCC-cc-c-ccc--CCCC-CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCe
Q 039208 111 QVLYLPNT-YGTTNG-----LKDPQ-MV-L-DIP--CVPY-GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHC 178 (331)
Q Consensus 111 ~~~~~~~~-~~~~~~-----~~~l~-~~-~-~~p--~~~~-~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~ 178 (331)
....+... ...... +...+ +. + ..+ .... .....++.++||..... .+..+|+...++++
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~--------~~~~~~~~~~~~~~ 232 (402)
T 3ia7_A 161 VHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTGR--------DGQPGWQPPRPDAP 232 (402)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC------------CCCCCSSTTCC
T ss_pred HHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCCc--------ccCCCCcccCCCCC
Confidence 00000000 000000 00000 00 0 000 0000 11245688999876432 12345665556678
Q ss_pred EEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCccccccc
Q 039208 179 IVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWA 246 (331)
Q Consensus 179 vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~ 246 (331)
+||+++ ++++++++.+.+++|..++... .+....++ .++.+.+|+
T Consensus 233 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~---------~~v~~~~~~ 289 (402)
T 3ia7_A 233 VLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD--------------PAVLGPLP---------PNVEAHQWI 289 (402)
T ss_dssp EEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC--------------GGGGCSCC---------TTEEEESCC
T ss_pred EEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC--------------hhhhCCCC---------CcEEEecCC
Confidence 999988 6788888888899998876421 01111233 466677999
Q ss_pred CHHHhhcCcccc-----------chhcCCcEeeccc-ccchhhhHHHHHhhhccceeehh------------hHHHH---
Q 039208 247 PQVDVLSHDSVV-----------AVRTGVPMVAWPS-NGDQMVNMAFLVEKIRDPLTVAE------------RRVIE--- 299 (331)
Q Consensus 247 PQ~~vL~H~~v~-----------al~~GVP~l~~P~-~~DQ~~na~~v~~~lGvG~~l~~------------~~lm~--- 299 (331)
||.++|+|+++. ++++|+|+|++|. ..||+.||+++++ .|+|+.+.. +++++
T Consensus 290 ~~~~ll~~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~-~g~g~~~~~~~~~~~~l~~~~~~ll~~~~ 368 (402)
T 3ia7_A 290 PFHSVLAHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIE-LGLGSVLRPDQLEPASIREAVERLAADSA 368 (402)
T ss_dssp CHHHHHTTEEEEEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHH-TTSEEECCGGGCSHHHHHHHHHHHHHCHH
T ss_pred CHHHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHH-cCCEEEccCCCCCHHHHHHHHHHHHcCHH
Confidence 999999998886 9999999999999 9999999999999 499998863 34443
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 039208 300 GIRAPKEQAVGALSEGGRSLAVVAELAESF 329 (331)
Q Consensus 300 ~a~~l~~~~~~a~~~ggss~~~l~~~v~~~ 329 (331)
..+++++ +++.+.+++++.+..+.+.+.+
T Consensus 369 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 397 (402)
T 3ia7_A 369 VRERVRR-MQRDILSSGGPARAADEVEAYL 397 (402)
T ss_dssp HHHHHHH-HHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHhhCChHHHHHHHHHHHH
Confidence 1122222 2233445666666666555443
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.93 E-value=3.5e-25 Score=211.29 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=165.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h------------------HHHhhhHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q------------------LALLNSPN 61 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p------------------~~~~~~~~ 61 (331)
|||+|++.++.||++|++.|+++|.++| |+|+++++....... + +.......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~G--h~V~v~~~~~~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELG--ADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEV 78 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTT--CCEEEEECGGGHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCC--CeEEEEeCHHHHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHHHHH
Confidence 6899999999999999999999999999 999999986432110 0 01111222
Q ss_pred HHHHHHHhhc-CCCccEEEEcCcchhH---HHHHHHcCCCeEEEecccHHHHH-------------HHhhc----ccccC
Q 039208 62 LHKTLIIQSK-TSNLKTLIIDFFHKVA---LQVSCSLNIPTYLFYASSASALA-------------QVLYL----PNTYG 120 (331)
Q Consensus 62 l~~~l~~l~~-~~~~d~vI~D~~~~~~---~~vA~~~giP~v~~~~~~~~~~~-------------~~~~~----~~~~~ 120 (331)
+.+.++.+.+ ..++|+||+|....++ ..+|+++|||++.++.++....+ ....+ .....
T Consensus 79 ~~~~~~~l~~~~~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (404)
T 3h4t_A 79 VAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRA 158 (404)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2233322211 1479999999665544 68899999999988877642000 00000 00000
Q ss_pred CCCCCCCCCcc-----cc---ccC----CCCCCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH----
Q 039208 121 TTNGLKDPQMV-----LD---IPC----VPYGEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF---- 184 (331)
Q Consensus 121 ~~~~~~~l~~~-----~~---~p~----~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf---- 184 (331)
.. .+...... .. +.+ .+.....+++..+|+++... ....+.++.+|++.. +++|||+|
T Consensus 159 ~l-gl~~~~~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~~G~~~~~~---~~~~~~~l~~~l~~~--~~~Vlv~~Gs~~ 232 (404)
T 3h4t_A 159 SI-GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPD---QRPLSAELEGFLRAG--SPPVYVGFGSGP 232 (404)
T ss_dssp HT-TCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCC---CCCCCHHHHHHHHTS--SCCEEECCTTSC
T ss_pred Hc-CCCCCcchhhccccCCeEEeeCcceeCCCCCCCCeEEeCccccCC---CCCCCHHHHHHHhcC--CCeEEEECCCCC
Confidence 00 00000000 00 001 11011234678889876543 234567888999853 47899998
Q ss_pred -------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCccc
Q 039208 185 -------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSV 257 (331)
Q Consensus 185 -------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v 257 (331)
.+.+++++.+.+++|+.+..... ...+ +.|+.+.+|+||.++|.+.++
T Consensus 233 ~~~~~~~~~~~al~~~~~~vv~~~g~~~~~----------------~~~~---------~~~v~~~~~~~~~~ll~~~d~ 287 (404)
T 3h4t_A 233 APAEAARVAIEAVRAQGRRVVLSSGWAGLG----------------RIDE---------GDDCLVVGEVNHQVLFGRVAA 287 (404)
T ss_dssp CCTTHHHHHHHHHHHTTCCEEEECTTTTCC----------------CSSC---------CTTEEEESSCCHHHHGGGSSE
T ss_pred CcHHHHHHHHHHHHhCCCEEEEEeCCcccc----------------cccC---------CCCEEEecCCCHHHHHhhCcE
Confidence 68889999999999998764210 0012 246667799999999988877
Q ss_pred c-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 258 V-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 258 ~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
. |+++|||+|++|+++||+.||+++++ .|+|+.+.
T Consensus 288 ~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~-~G~g~~l~ 333 (404)
T 3h4t_A 288 VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVAD-LGVGVAHD 333 (404)
T ss_dssp EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH-HTSEEECS
T ss_pred EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHH-CCCEeccC
Confidence 6 99999999999999999999999999 59999986
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.93 E-value=5.1e-25 Score=211.03 Aligned_cols=259 Identities=13% Similarity=0.061 Sum_probs=160.9
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-----HH----------
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-----LA---------- 55 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-----~~---------- 55 (331)
|++++.++||++++.++.||++|++.|+++|+++| |+|+++++....... | ..
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G--~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARG--HRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTL 78 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTT--CEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSH
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCC--CeEEEEeCHHHHHHHHhCCCEEEEcCCcCccccccccccchhh
Confidence 88877788999999999999999999999999999 999999976432110 1 00
Q ss_pred ----HhhhH---HHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH--HH----------------
Q 039208 56 ----LLNSP---NLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA--LA---------------- 110 (331)
Q Consensus 56 ----~~~~~---~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~--~~---------------- 110 (331)
..... .....+.++++..+||+||+|.+..|+..+|+++|||++.++++.... +.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (430)
T 2iyf_A 79 LDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTER 158 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchH
Confidence 00000 111122333456799999999987899999999999999988654200 00
Q ss_pred H--H-hhcccccCC-CCC-----CCCCCccccccCC----CC-CCCCCC-eEEeccCCCCCCCCCCCCcchhhhhhccCC
Q 039208 111 Q--V-LYLPNTYGT-TNG-----LKDPQMVLDIPCV----PY-GEQMPP-LYCTGAILAATTSDNKNDDHTCFSWLDKQP 175 (331)
Q Consensus 111 ~--~-~~~~~~~~~-~~~-----~~~l~~~~~~p~~----~~-~~~~p~-~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~ 175 (331)
. + ..+..+... ..+ +...++..-.+.. .. ....++ ++++||...... +..+|.+..+
T Consensus 159 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~~~--------~~~~~~~~~~ 230 (430)
T 2iyf_A 159 GRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRA--------EEGGWQRPAG 230 (430)
T ss_dssp HHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC-------------CCCCCCCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCCCC--------CCCCCccccC
Confidence 0 0 000000000 000 0000000000000 00 112346 999998654220 1235766555
Q ss_pred CCeEEEeeH------------HHHHHHHhc-CCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCccc
Q 039208 176 SHCIVFLCF------------EMAMRLKRS-GAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPV 242 (331)
Q Consensus 176 ~~~vVyvsf------------~l~~al~~~-~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv 242 (331)
++++||+++ ++++++++. +.+|+|.++.... .+....++ .++.+
T Consensus 231 ~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--------------~~~l~~~~---------~~v~~ 287 (430)
T 2iyf_A 231 AEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--------------PAELGELP---------DNVEV 287 (430)
T ss_dssp CSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C--------------GGGGCSCC---------TTEEE
T ss_pred CCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--------------hHHhccCC---------CCeEE
Confidence 678999987 577788775 7889898876421 01111222 46667
Q ss_pred ccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 243 KSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 243 ~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.+|+||.++|+|+++. |+++|+|+|++|..+||+.|++++++ .|+|+.+.
T Consensus 288 ~~~~~~~~~l~~ad~~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~-~g~g~~~~ 348 (430)
T 2iyf_A 288 HDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQG-LGVARKLA 348 (430)
T ss_dssp ESSCCHHHHHTTCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH-TTSEEECC
T ss_pred EecCCHHHHhhccCEEEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHH-cCCEEEcC
Confidence 7999999999999986 99999999999999999999999999 59999885
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.90 E-value=1e-22 Score=196.14 Aligned_cols=254 Identities=15% Similarity=0.076 Sum_probs=159.5
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-------HHHh----h-----
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-------LALL----N----- 58 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-------~~~~----~----- 58 (331)
..+|||+|++.++.||++|++.|+++|.++| |+|+|+++....... + +.+. .
T Consensus 18 ~~~mrIl~~~~~~~GHv~p~l~la~~L~~~G--heV~~~~~~~~~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 95 (441)
T 2yjn_A 18 GSHMRVVFSSMASKSHLFGLVPLAWAFRAAG--HEVRVVASPALTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYVR 95 (441)
T ss_dssp -CCCEEEEECCSCHHHHTTTHHHHHHHHHTT--CEEEEEECGGGHHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHHHT
T ss_pred CCccEEEEEcCCCcchHhHHHHHHHHHHHCC--CeEEEEeCchhHHHHHhCCCceeecCCccchHHHhhhhhcccccccc
Confidence 3458999999999999999999999999999 999999986542211 1 1100 0
Q ss_pred --------hH------------HHH---------H-HHHHh---hcCCCccEEEEcCcchhHHHHHHHcCCCeEEEeccc
Q 039208 59 --------SP------------NLH---------K-TLIIQ---SKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 59 --------~~------------~l~---------~-~l~~l---~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~ 105 (331)
.. .+. . .+.++ ++..+||+||+|.+..++..+|+++|||++.+...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~~ 175 (441)
T 2yjn_A 96 SLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGP 175 (441)
T ss_dssp TCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSSC
T ss_pred cccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecCC
Confidence 00 011 0 22222 234689999999988899999999999999986554
Q ss_pred HHHHHHH---h----hcccccCCC------C------CC-CCC-----CccccccCCC-CC--CCCCCeEEeccCCCCCC
Q 039208 106 ASALAQV---L----YLPNTYGTT------N------GL-KDP-----QMVLDIPCVP-YG--EQMPPLYCTGAILAATT 157 (331)
Q Consensus 106 ~~~~~~~---~----~~~~~~~~~------~------~~-~~l-----~~~~~~p~~~-~~--~~~p~~~~vGp~~~~~~ 157 (331)
....... . +.+...... . .+ ... .+..-.++.+ +. ...+ -.++++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~--- 251 (441)
T 2yjn_A 176 DITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLK-TVGMRYVDY--- 251 (441)
T ss_dssp CHHHHHHHHHHHHGGGSCTTTCCCHHHHHHHHHHHHTTCCCCCGGGTSCSSEEECSCGGGSCCCCCC-EEECCCCCC---
T ss_pred CcchhhhhhhhhhccccccccccchHHHHHHHHHHHcCCCCCCccccCCCeEEEecCccccCCCCCC-CCceeeeCC---
Confidence 3211110 0 000000000 0 00 000 0000000000 00 0001 022222211
Q ss_pred CCCCCCcchhhhhhccCCCCeEEEeeH---------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhh
Q 039208 158 SDNKNDDHTCFSWLDKQPSHCIVFLCF---------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEAS 222 (331)
Q Consensus 158 ~~~~~~~~~~~~wLd~~~~~~vVyvsf---------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~ 222 (331)
..+.++.+|++..+++++|||++ ++++++++.+.+|+|+.+.... +
T Consensus 252 ----~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~---------------~ 312 (441)
T 2yjn_A 252 ----NGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQL---------------E 312 (441)
T ss_dssp ----CSSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTT---------------S
T ss_pred ----CCCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcch---------------h
Confidence 01234678998766678999998 2467888889999998875411 0
Q ss_pred hhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhcccee
Q 039208 223 AELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLT 291 (331)
Q Consensus 223 ~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~ 291 (331)
....+| .++.+.+|+||.++|.+.++. |+++|||+|++|++.||+.||+++++ .|+|+.
T Consensus 313 ~l~~~~---------~~v~~~~~~~~~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~ 382 (441)
T 2yjn_A 313 GVANIP---------DNVRTVGFVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQE-FGAGIA 382 (441)
T ss_dssp SCSSCC---------SSEEECCSCCHHHHGGGCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH-HTSEEE
T ss_pred hhccCC---------CCEEEecCCCHHHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHH-cCCEEE
Confidence 011122 466777999999999888876 99999999999999999999999999 599998
Q ss_pred eh
Q 039208 292 VA 293 (331)
Q Consensus 292 l~ 293 (331)
+.
T Consensus 383 ~~ 384 (441)
T 2yjn_A 383 LP 384 (441)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.90 E-value=1.3e-22 Score=191.53 Aligned_cols=249 Identities=13% Similarity=0.089 Sum_probs=154.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h--HH-Hh-----------h-h--H
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q--LA-LL-----------N-S--P 60 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p--~~-~~-----------~-~--~ 60 (331)
|||++++.++.||++|++.|+++|+++| |+|+++++....... + .. .. . . .
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~G--h~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAG--HQVVMAANQDMGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSDPV 78 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEEECGGGHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCSHH
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCC--CEEEEEeCHHHHHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcchH
Confidence 5899999999999999999999999999 999999876432100 0 10 00 0 0 0
Q ss_pred ---HH-H--------HHHH---HhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH----HHHHhhcccccCC
Q 039208 61 ---NL-H--------KTLI---IQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA----LAQVLYLPNTYGT 121 (331)
Q Consensus 61 ---~l-~--------~~l~---~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~----~~~~~~~~~~~~~ 121 (331)
.+ . ..+. ++++..+||+||+|.+..|+..+|+.+|||++.+...+... ......+..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (384)
T 2p6p_A 79 AQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGADAELRPELSE 158 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCTTTHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccchhhHHHHHHHHHHHHH
Confidence 01 1 1111 22244689999999988889999999999999887543210 0000000000000
Q ss_pred CCCCCCC--CccccccCCC-CC--CCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH------------
Q 039208 122 TNGLKDP--QMVLDIPCVP-YG--EQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF------------ 184 (331)
Q Consensus 122 ~~~~~~l--~~~~~~p~~~-~~--~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf------------ 184 (331)
. .+... ....-.++.+ +. ...+. ..++.+.. . .+.++.+|++.++++++||+++
T Consensus 159 ~-g~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~ 229 (384)
T 2p6p_A 159 L-GLERLPAPDLFIDICPPSLRPANAAPA-RMMRHVAT-S------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRN 229 (384)
T ss_dssp T-TCSSCCCCSEEEECSCGGGSCTTSCCC-EECCCCCC-C------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCC
T ss_pred c-CCCCCCCCCeEEEECCHHHCCCCCCCC-CceEecCC-C------CCCCCCchhhcCCCCCEEEEECCCCCcccccccc
Confidence 0 00000 0000011100 00 00110 12222211 1 1234668998766678999987
Q ss_pred -----HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCcccc-
Q 039208 185 -----EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHDSVV- 258 (331)
Q Consensus 185 -----~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~- 258 (331)
+++++|++.+.+|+|+.+.+ +.+....+ +.++.+ +|+||.++|++.++.
T Consensus 230 ~~~~~~~~~al~~~~~~~~~~~g~~---------------~~~~l~~~---------~~~v~~-~~~~~~~~l~~~d~~v 284 (384)
T 2p6p_A 230 FDFLRGLAKDLVRWDVELIVAAPDT---------------VAEALRAE---------VPQARV-GWTPLDVVAPTCDLLV 284 (384)
T ss_dssp CTTHHHHHHHHHTTTCEEEEECCHH---------------HHHHHHHH---------CTTSEE-ECCCHHHHGGGCSEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEeCCC---------------CHHhhCCC---------CCceEE-cCCCHHHHHhhCCEEE
Confidence 35678888899999988642 00101111 357788 999999999988876
Q ss_pred ----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 ----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 ----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|||+|++|.+.||+.||+++++ +|+|+.+.
T Consensus 285 ~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~-~g~g~~~~ 328 (384)
T 2p6p_A 285 HHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVAD-YGAAIALL 328 (384)
T ss_dssp ECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHH-HTSEEECC
T ss_pred eCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHHH-CCCeEecC
Confidence 99999999999999999999999998 59999885
No 16
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.90 E-value=2.2e-22 Score=190.95 Aligned_cols=284 Identities=18% Similarity=0.154 Sum_probs=170.9
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-------HH------------
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-------LA------------ 55 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-------~~------------ 55 (331)
..+|||+|++.++.||++|++.|+++|.++| |+|+++++ ...... + .+
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~G--heV~v~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAG--HDVLIAVA-EHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAE 94 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTT--CEEEEEES-SCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHH
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCC--CEEEEecc-chHHHHHhCCCeeEecCCccCHHHHhhhcccCCccccc
Confidence 4458999999999999999999999999999 99999987 332110 0 00
Q ss_pred ------------------HhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHH----HHHh
Q 039208 56 ------------------LLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASAL----AQVL 113 (331)
Q Consensus 56 ------------------~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~----~~~~ 113 (331)
......+.+ +.++++..+||+||+|....++..+|+.+|||++.+........ ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~ 173 (398)
T 3oti_A 95 TVATRPAIDLEEWGVQIAAVNRPLVDG-TMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIAS 173 (398)
T ss_dssp TGGGSCCCSGGGGHHHHHHHHGGGHHH-HHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTHHHHHHT
T ss_pred cccCChhhhHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccchhhHHHH
Confidence 000011112 22223445899999998888888999999999998765421110 0000
Q ss_pred hcccccCCCCCCCCCCc-cccccCCCC--C-CCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH-----
Q 039208 114 YLPNTYGTTNGLKDPQM-VLDIPCVPY--G-EQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF----- 184 (331)
Q Consensus 114 ~~~~~~~~~~~~~~l~~-~~~~p~~~~--~-~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf----- 184 (331)
.+....... .+. .+. ...+-..+. . ...+...++.. .+. ..+....+|+...+++++||+++
T Consensus 174 ~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~v~v~~G~~~~ 244 (398)
T 3oti_A 174 FLTDLMDKH-QVS-LPEPVATIESFPPSLLLEAEPEGWFMRW-VPY------GGGAVLGDRLPPVPARPEVAITMGTIEL 244 (398)
T ss_dssp TCHHHHHHT-TCC-CCCCSEEECSSCGGGGTTSCCCSBCCCC-CCC------CCCEECCSSCCCCCSSCEEEECCTTTHH
T ss_pred HHHHHHHHc-CCC-CCCCCeEEEeCCHHHCCCCCCCCCCccc-cCC------CCCcCCchhhhcCCCCCEEEEEcCCCcc
Confidence 000000000 000 000 000000000 0 00000011100 000 11233456777666678999987
Q ss_pred ---------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhcCc
Q 039208 185 ---------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLSHD 255 (331)
Q Consensus 185 ---------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~H~ 255 (331)
+++++|++.+.+++|+.+.... +....+| .++.+.+|+||.++|+|.
T Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~---------------~~l~~~~---------~~v~~~~~~~~~~ll~~a 300 (398)
T 3oti_A 245 QAFGIGAVEPIIAAAGEVDADFVLALGDLDI---------------SPLGTLP---------RNVRAVGWTPLHTLLRTC 300 (398)
T ss_dssp HHHCGGGHHHHHHHHHTSSSEEEEECTTSCC---------------GGGCSCC---------TTEEEESSCCHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHcCCCEEEEEECCcCh---------------hhhccCC---------CcEEEEccCCHHHHHhhC
Confidence 5678888889999999876521 1112233 567777999999999998
Q ss_pred ccc-----------chhcCCcEeecccccchhhhH--HHHHhhhccceeehh--------hHHHH---hHHHHHHHHHHH
Q 039208 256 SVV-----------AVRTGVPMVAWPSNGDQMVNM--AFLVEKIRDPLTVAE--------RRVIE---GIRAPKEQAVGA 311 (331)
Q Consensus 256 ~v~-----------al~~GVP~l~~P~~~DQ~~na--~~v~~~lGvG~~l~~--------~~lm~---~a~~l~~~~~~a 311 (331)
++. |+++|+|+|++|++.||+.|+ +++++ .|+|+.++. .++++ ..+++++.+ +.
T Consensus 301 d~~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~-~g~g~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~ 378 (398)
T 3oti_A 301 TAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR-RGIGLVSTSDKVDADLLRRLIGDESLRTAAREVR-EE 378 (398)
T ss_dssp SEEEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHH-HTSEEECCGGGCCHHHHHHHHHCHHHHHHHHHHH-HH
T ss_pred CEEEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHH-CCCEEeeCCCCCCHHHHHHHHcCHHHHHHHHHHH-HH
Confidence 886 999999999999999999999 99999 599999864 34554 122222222 23
Q ss_pred HhcCCChHHHHHHHHH
Q 039208 312 LSEGGRSLAVVAELAE 327 (331)
Q Consensus 312 ~~~ggss~~~l~~~v~ 327 (331)
+.+..+..+..+.+.+
T Consensus 379 ~~~~~~~~~~~~~l~~ 394 (398)
T 3oti_A 379 MVALPTPAETVRRIVE 394 (398)
T ss_dssp HHTSCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHH
Confidence 3445555555554433
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.88 E-value=1e-21 Score=186.36 Aligned_cols=256 Identities=15% Similarity=0.103 Sum_probs=153.0
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-------H------------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-------L------------ 54 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-------~------------ 54 (331)
+..+|||+|++.++.||++|++.|+++|.++| |+|+++++....... + +
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~G--heV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAG--HEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTM 89 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTT--CEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCC
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCC--CEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccccc
Confidence 44568999999999999999999999999999 999999875332110 0 0
Q ss_pred -------HHh-------hhHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHHHH----HHhhcc
Q 039208 55 -------ALL-------NSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASALA----QVLYLP 116 (331)
Q Consensus 55 -------~~~-------~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~----~~~~~~ 116 (331)
+.. ....+...+.++++..+||+||+|....++..+|+.+|||++.+......... ....+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~~~~l~ 169 (398)
T 4fzr_A 90 PREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAGVGELA 169 (398)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHHHHHTH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHHHHHHH
Confidence 000 00001111222334568999999987788889999999999987655321110 000000
Q ss_pred cccCCCCCCCCCCc-cccccCCC--CCC-CCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH--------
Q 039208 117 NTYGTTNGLKDPQM-VLDIPCVP--YGE-QMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF-------- 184 (331)
Q Consensus 117 ~~~~~~~~~~~l~~-~~~~p~~~--~~~-~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf-------- 184 (331)
...... .+..... ...+-..+ +.. ..+...++...... ....++.+|+...+++++||+++
T Consensus 170 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~ 242 (398)
T 4fzr_A 170 PELAEL-GLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYN------GRNDQVPSWVFEERKQPRLCLTFGTRVPLPN 242 (398)
T ss_dssp HHHHTT-TCSSCCCCSEEEECSCGGGC----CCCEECCCCCCC------CSSCCCCHHHHSCCSSCEEECC---------
T ss_pred HHHHHc-CCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCC------CCCCCCchhhhcCCCCCEEEEEccCcccccc
Confidence 000000 0000000 00000000 000 00111111111000 01233556777655678899977
Q ss_pred ------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhh
Q 039208 185 ------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVL 252 (331)
Q Consensus 185 ------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL 252 (331)
++++++++.+.+++|+.+.... +....+| .++.+.+|+||.++|
T Consensus 243 ~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~---------------~~l~~~~---------~~v~~~~~~~~~~ll 298 (398)
T 4fzr_A 243 TNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLA---------------QTLQPLP---------EGVLAAGQFPLSAIM 298 (398)
T ss_dssp -------CCSHHHHHHHGGGGTCEEEECCCC-----------------------CC---------TTEEEESCCCHHHHG
T ss_pred cccccchHHHHHHHHHHHHhCCCEEEEEeCCcch---------------hhhccCC---------CcEEEeCcCCHHHHH
Confidence 1356677778899998875411 1111233 566777999999999
Q ss_pred cCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 253 SHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 253 ~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
+|.++. |+++|||+|++|++.||+.|++++++. |+|+.+.
T Consensus 299 ~~ad~~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~g~~~~ 349 (398)
T 4fzr_A 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEVP 349 (398)
T ss_dssp GGCSEEEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHT-TSEEECC
T ss_pred hhCCEEEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCEEecC
Confidence 998886 999999999999999999999999995 9999886
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.84 E-value=4.7e-20 Score=174.20 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=149.0
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH------------------------
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL------------------------ 54 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~------------------------ 54 (331)
+|||+|++.++.||++|+..|+++|.++| |+|+++++....... ++
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~G--heV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASG--HEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQ 78 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTT--CEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGC
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCC--CEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccc
Confidence 47999999999999999999999999999 999999864221100 00
Q ss_pred ---------HHhhhHHH-------HHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH-----HHHHh
Q 039208 55 ---------ALLNSPNL-------HKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA-----LAQVL 113 (331)
Q Consensus 55 ---------~~~~~~~l-------~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~-----~~~~~ 113 (331)
+......+ ..-+.++++..+||+||+|.+..++..+|+.+|||++.+....... .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~~~~ 158 (391)
T 3tsa_A 79 RDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHE 158 (391)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccccccccchHHH
Confidence 00000000 1112223345689999999877788889999999999886543211 00000
Q ss_pred hccc-ccCCCCCCCCCCcc-cc-cc-CCCCCCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH-----
Q 039208 114 YLPN-TYGTTNGLKDPQMV-LD-IP-CVPYGEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF----- 184 (331)
Q Consensus 114 ~~~~-~~~~~~~~~~l~~~-~~-~p-~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf----- 184 (331)
.+.. +............. +. .| ...... ......+.-. +.. .+.....|+...+++++||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-p~~------~~~~~~~~~~~~~~~~~vlv~~G~~~~ 230 (391)
T 3tsa_A 159 LLDPVCRHHGLTGLPTPELILDPCPPSLQASD-APQGAPVQYV-PYN------GSGAFPAWGAARTSARRVCICMGRMVL 230 (391)
T ss_dssp HHHHHHHHTTSSSSCCCSEEEECSCGGGSCTT-SCCCEECCCC-CCC------CCEECCGGGSSCCSSEEEEEECCHHHH
T ss_pred HHHHHHHHcCCCCCCCCceEEEecChhhcCCC-CCccCCeeee-cCC------CCcCCCchhhcCCCCCEEEEEcCCCCC
Confidence 0000 00000000000000 00 00 000000 0001111000 000 1223456887666678999987
Q ss_pred ----------HHHHHHHhc-CCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHHhhc
Q 039208 185 ----------EMAMRLKRS-GAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVDVLS 253 (331)
Q Consensus 185 ----------~l~~al~~~-~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~vL~ 253 (331)
.+.++ ++. +.+|+|..+... .+....++ .++.+.+|.||.++|+
T Consensus 231 ~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~---------------~~~l~~~~---------~~v~~~~~~~~~~ll~ 285 (391)
T 3tsa_A 231 NATGPAPLLRAVAAA-TELPGVEAVIAVPPEH---------------RALLTDLP---------DNARIAESVPLNLFLR 285 (391)
T ss_dssp HHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG---------------GGGCTTCC---------TTEEECCSCCGGGTGG
T ss_pred cccchHHHHHHHHHh-ccCCCeEEEEEECCcc---------------hhhcccCC---------CCEEEeccCCHHHHHh
Confidence 23444 455 678888876531 01111122 4667679999999998
Q ss_pred Ccccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 254 HDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 254 H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
+.++. |+++|+|+|++|++.||+.|+.++++. |+|+.+.
T Consensus 286 ~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~g~~~~ 335 (391)
T 3tsa_A 286 TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAA-GAGICLP 335 (391)
T ss_dssp GCSEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHT-TSEEECC
T ss_pred hCCEEEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHc-CCEEecC
Confidence 88776 999999999999999999999999995 9999875
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.80 E-value=3.5e-18 Score=162.17 Aligned_cols=258 Identities=15% Similarity=0.088 Sum_probs=154.5
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------hH-------------------
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------QL------------------- 54 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p~------------------- 54 (331)
...+|||++++.++.||++|++.|+++|.++| |+|+++++....... |.
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~G--heV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYPLLPLATAARAAG--HEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSP 94 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGGGHHHHHHHHHTT--CEEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCC
T ss_pred ccceeEEEEEcCCCcccHHHHHHHHHHHHHCC--CEEEEEccHHHHHHHHhcCCceeecCcccccchhhhhhhhhcccCC
Confidence 34568999999999999999999999999999 999999975321100 10
Q ss_pred -----H-------Hhh----hHHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH----HHHHhh
Q 039208 55 -----A-------LLN----SPNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA----LAQVLY 114 (331)
Q Consensus 55 -----~-------~~~----~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~----~~~~~~ 114 (331)
. ... .......+.++++..+||+||+|....++..+|+.+|||++.+....... ......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~~~~ 174 (412)
T 3otg_A 95 EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRSIEEE 174 (412)
T ss_dssp TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHHHHHHH
T ss_pred ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhHHHHHH
Confidence 0 000 00000112223345589999999877778888999999999876543210 000000
Q ss_pred cccc-cCCCCCC-CCC----CccccccCCC-CCC----CCCCeEEeccCCCCCCCCCCCCcchhhhh-hccCCCCeEEEe
Q 039208 115 LPNT-YGTTNGL-KDP----QMVLDIPCVP-YGE----QMPPLYCTGAILAATTSDNKNDDHTCFSW-LDKQPSHCIVFL 182 (331)
Q Consensus 115 ~~~~-~~~~~~~-~~l----~~~~~~p~~~-~~~----~~p~~~~vGp~~~~~~~~~~~~~~~~~~w-Ld~~~~~~vVyv 182 (331)
+... .....+. ... .+..-.++.. ... ......++.+.... ......+| ....+++++||+
T Consensus 175 ~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vlv 247 (412)
T 3otg_A 175 VRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFA-------EQGDLPAWLSSRDTARPLVYL 247 (412)
T ss_dssp HHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCC-------CCCCCCGGGGGSCTTSCEEEE
T ss_pred HHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCC-------CCCCCCCccccccCCCCEEEE
Confidence 0000 0000000 000 0000000000 000 00111121111111 11223456 333345678999
Q ss_pred eH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHHH
Q 039208 183 CF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQVD 250 (331)
Q Consensus 183 sf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~~ 250 (331)
++ ++++++++.+.+|+|..+..... +....++ .++.+.+|.|+.+
T Consensus 248 ~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~--------------~~l~~~~---------~~v~~~~~~~~~~ 304 (412)
T 3otg_A 248 TLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDV--------------SGLGEVP---------ANVRLESWVPQAA 304 (412)
T ss_dssp ECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCC--------------TTCCCCC---------TTEEEESCCCHHH
T ss_pred EcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCCh--------------hhhccCC---------CcEEEeCCCCHHH
Confidence 87 67777888888999998765210 1111222 4667779999999
Q ss_pred hhcCcccc-----------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 251 VLSHDSVV-----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 251 vL~H~~v~-----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
+|+++++. |+++|+|+|++|...||..|++.+++. |.|..+..
T Consensus 305 ~l~~ad~~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~-g~g~~~~~ 358 (412)
T 3otg_A 305 LLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA-GAGDHLLP 358 (412)
T ss_dssp HGGGCSEEEESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-TSEEECCG
T ss_pred HHhcCcEEEECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCEEecCc
Confidence 99999986 999999999999999999999999995 99998853
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.59 E-value=1.4e-13 Score=129.27 Aligned_cols=246 Identities=11% Similarity=-0.023 Sum_probs=128.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--c----------h--------H---HHh---hhHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--G----------Q--------L---ALL---NSPN 61 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--~----------p--------~---~~~---~~~~ 61 (331)
.||++...++-||++|.+.||++|.++| |+|+|+++....+. . | . ++. ....
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g--~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG--YAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKS 80 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC--CEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHH
Confidence 4788877666699999999999999999 99999987543211 0 1 0 000 1111
Q ss_pred HHHHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCCCCCccccccCCCC
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLKDPQMVLDIPCVPY 139 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~ 139 (331)
+... .++++..+||+||++.... .+..+|+.+|||++..-.............+ ..+.. +..+++ .
T Consensus 81 ~~~~-~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~G~~nr~l~~-~a~~v--~~~~~~-------~- 148 (365)
T 3s2u_A 81 LFQA-LRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAGTANRSLAP-IARRV--CEAFPD-------T- 148 (365)
T ss_dssp HHHH-HHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSCCHHHHHHGG-GCSEE--EESSTT-------S-
T ss_pred HHHH-HHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhhhhHHHhhcc-cccee--eecccc-------c-
Confidence 1111 1223445999999996554 3345567789999875322111111110000 00000 000000 0
Q ss_pred CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH----------HHHHHHHhc----CCcEEEEEeCCC
Q 039208 140 GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF----------EMAMRLKRS----GAAFLWVVLFPP 205 (331)
Q Consensus 140 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf----------~l~~al~~~----~~~flw~~~~~~ 205 (331)
-....+.+.+|........ .+..-...++. .+.+|++.. .+.++++.. +..++|..+...
T Consensus 149 ~~~~~k~~~~g~pvr~~~~----~~~~~~~~~~~--~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~ 222 (365)
T 3s2u_A 149 FPASDKRLTTGNPVRGELF----LDAHARAPLTG--RRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQH 222 (365)
T ss_dssp SCC---CEECCCCCCGGGC----CCTTSSCCCTT--SCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTT
T ss_pred ccCcCcEEEECCCCchhhc----cchhhhcccCC--CCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCccc
Confidence 0012344555543322100 00000111222 234555543 456666654 345666665541
Q ss_pred CchhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCHH-HhhcCcccc-----------chhcCCcEeecccc-
Q 039208 206 LEDEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQV-DVLSHDSVV-----------AVRTGVPMVAWPSN- 272 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ~-~vL~H~~v~-----------al~~GVP~l~~P~~- 272 (331)
. + . +.+. .+. .+.++.+.+|.++. ++++.+++. ++++|+|+|.+|+-
T Consensus 223 ~-------------~-~----~~~~-~~~-~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~ 282 (365)
T 3s2u_A 223 A-------------E-I----TAER-YRT-VAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPH 282 (365)
T ss_dssp H-------------H-H----HHHH-HHH-TTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC---
T ss_pred c-------------c-c----ccce-ecc-cccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCC
Confidence 0 0 0 0000 011 12344455888874 566666654 99999999999873
Q ss_pred ---cchhhhHHHHHhhhccceeehh
Q 039208 273 ---GDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 273 ---~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.+|..||+.+++. |+|+.+..
T Consensus 283 ~~~~~Q~~NA~~l~~~-G~a~~l~~ 306 (365)
T 3s2u_A 283 AIDDHQTRNAEFLVRS-GAGRLLPQ 306 (365)
T ss_dssp --CCHHHHHHHHHHTT-TSEEECCT
T ss_pred CCCcHHHHHHHHHHHC-CCEEEeec
Confidence 5899999999995 99998853
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=119.58 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=85.5
Q ss_pred CCcchhhhhhccCCCCeEEEeeH-------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCc
Q 039208 162 NDDHTCFSWLDKQPSHCIVFLCF-------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLP 228 (331)
Q Consensus 162 ~~~~~~~~wLd~~~~~~vVyvsf-------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 228 (331)
+++.++.+|++..+++++||++| .++++|++.+.+|+|+.+.... ..++
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~------------------~~~~ 67 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP------------------DTLG 67 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC------------------TTCC
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc------------------ccCC
Confidence 46788999998876678999998 6788888888999999875411 1133
Q ss_pred hhHHhhhcCCCcccccccCHHHhhcCcccc-------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh
Q 039208 229 EGFVERTRDWGLPVKSWAPQVDVLSHDSVV-------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 229 ~~f~~~~~~~~~vv~~W~PQ~~vL~H~~v~-------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.++.+.+|+||.++|.|+++. |+++|+|+|++|.+.||+.||+++++ .|+|+.+..
T Consensus 68 ---------~~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~-~g~g~~~~~ 136 (170)
T 2o6l_A 68 ---------LNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA-RGAAVRVDF 136 (170)
T ss_dssp ---------TTEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT-TTSEEECCT
T ss_pred ---------CcEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHH-cCCeEEecc
Confidence 466677999999999664332 99999999999999999999999999 599999863
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.16 E-value=1.6e-09 Score=100.33 Aligned_cols=281 Identities=12% Similarity=0.028 Sum_probs=145.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--c----------hH--------HHh------hhHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--G----------QL--------ALL------NSPN 61 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--~----------p~--------~~~------~~~~ 61 (331)
|||+++..+..||..++..|+++|.++| |+|++++....... . +. ... ....
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQG--WQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNA 84 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTT--CEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHHH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcC--CEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHHH
Confidence 7999998776699999999999999999 99999987542110 0 00 000 0001
Q ss_pred HHHHHHHhhcCCCccEEEEcCcc--hhHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCCCCCccccccCCCC
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFH--KVALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLKDPQMVLDIPCVPY 139 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~ 139 (331)
+.. +.++++..+||+|+++... .++..+++..|+|++............. .+... .+.+....
T Consensus 85 ~~~-l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~----------~d~v~~~~--- 149 (364)
T 1f0k_A 85 WRQ-ARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNK-WLAKI----------ATKVMQAF--- 149 (364)
T ss_dssp HHH-HHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHHHH-HHTTT----------CSEEEESS---
T ss_pred HHH-HHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCCcHHHH-HHHHh----------CCEEEecC---
Confidence 111 2222344589999998643 2455677778999986543311000000 00000 00000000
Q ss_pred CCCCCCeEEeccCCCCCCCCCCCCcchhhhhhccCCCCeEEEeeH----------HHHHHHHhc--CCcEEEEEeCCCCc
Q 039208 140 GEQMPPLYCTGAILAATTSDNKNDDHTCFSWLDKQPSHCIVFLCF----------EMAMRLKRS--GAAFLWVVLFPPLE 207 (331)
Q Consensus 140 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsf----------~l~~al~~~--~~~flw~~~~~~~~ 207 (331)
+...+++..+|.-..... -.. +. ..+.+...++..+|++.. .++++++.. +.++++.+++...
T Consensus 150 ~~~~~~~~~i~n~v~~~~--~~~-~~-~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~~~~~l~i~G~~~~- 224 (364)
T 1f0k_A 150 PGAFPNAEVVGNPVRTDV--LAL-PL-PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQ- 224 (364)
T ss_dssp TTSSSSCEECCCCCCHHH--HTS-CC-HHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGGGEEEEEECCTTCH-
T ss_pred hhhcCCceEeCCccchhh--ccc-ch-hhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcCCcEEEEEcCCchH-
Confidence 101123344443211100 000 01 111222222334444432 455777665 3566777765410
Q ss_pred hhhhhhhhhhchhhhhhccCchhHHhhhcCCCcccccccCH-HHhhcCcccc-----------chhcCCcEeecccc---
Q 039208 208 DEFRQTLTVADAEASAELFLPEGFVERTRDWGLPVKSWAPQ-VDVLSHDSVV-----------AVRTGVPMVAWPSN--- 272 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~lp~~f~~~~~~~~~vv~~W~PQ-~~vL~H~~v~-----------al~~GVP~l~~P~~--- 272 (331)
+ .+-+ ..++..-.++.+.+|.++ .++++..++. |+++|+|+|+.|..
T Consensus 225 --------------~---~l~~-~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~ 286 (364)
T 1f0k_A 225 --------------Q---SVEQ-AYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKD 286 (364)
T ss_dssp --------------H---HHHH-HHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTT
T ss_pred --------------H---HHHH-HHhhcCCCceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCc
Confidence 0 0100 111111124666688744 4555555544 99999999999998
Q ss_pred cchhhhHHHHHhhhccceeehh-----hHHHH--------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 273 GDQMVNMAFLVEKIRDPLTVAE-----RRVIE--------GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 273 ~DQ~~na~~v~~~lGvG~~l~~-----~~lm~--------~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
.||..|++.+++. |.|..++. +++-+ ..+++++.+++. .+..+..+..+++.+.++
T Consensus 287 ~~q~~~~~~~~~~-g~g~~~~~~d~~~~~la~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 287 RQQYWNALPLEKA-GAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAA-SIPDATERVANEVSRVAR 355 (364)
T ss_dssp CHHHHHHHHHHHT-TSEEECCGGGCCHHHHHHHHHTCCHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhC-CcEEEeccccCCHHHHHHHHHhcCHHHHHHHHHHHHHh-hccCHHHHHHHHHHHHHH
Confidence 7999999999995 99988754 12211 234455555443 234555555555555443
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.85 E-value=0.00022 Score=64.11 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=124.2
Q ss_pred cEEEEEcCC----CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----hHHHhhhHHHHHHHHHhhcCCCccEE
Q 039208 8 IRLFFNPSP----GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----QLALLNSPNLHKTLIIQSKTSNLKTL 78 (331)
Q Consensus 8 ~~i~~~p~p----~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p~~~~~~~~l~~~l~~l~~~~~~d~v 78 (331)
|+|+|..=. |.||+.=.+.||++|. +|+|++........ +..........++++.+ +..++|+|
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~------~v~F~~~~~~~~~~~~~g~~v~~l~~~d~~~~~~~l-~~~~~d~l 73 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS------DVSFACLPLEGSLIDEIPYPVYELSSESIYELINLI-KEEKFELL 73 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS------SEEEEECCCTTCCGGGCCSCEEECSSSCHHHHHHHH-HHHTCSEE
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH------hCEEEEecCcHhHHHHCCCeEEEcCccCHHHHHHHH-HhCCCCEE
Confidence 356665543 5799999999999996 57888754332211 11100011222322222 23389999
Q ss_pred EEcCcch---hHHHHHHHcCCCeEEEecccHHHHHHHhhcccccCCCCCCC-CCCccccccCCCCCCCCC--CeEEeccC
Q 039208 79 IIDFFHK---VALQVSCSLNIPTYLFYASSASALAQVLYLPNTYGTTNGLK-DPQMVLDIPCVPYGEQMP--PLYCTGAI 152 (331)
Q Consensus 79 I~D~~~~---~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~p~~~~~~~~p--~~~~vGp~ 152 (331)
|.|.... |-..+.+..|++.+.+--..- +.. .+.. +. ++... ...+....| ..+..||-
T Consensus 74 IvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~~---------~~~-~Dll-in~~~~~~----~~~Y~~~~p~~~~~l~G~~ 138 (282)
T 3hbm_A 74 IIDHYGISVDDEKLIKLETGVKILSFDDEIK---------PHH-CDIL-LNVNAYAK----ASDYEGLVPFKCEVRCGFS 138 (282)
T ss_dssp EEECTTCCHHHHHHHHHHHCCEEEEECSSCC---------CCC-CSEE-EECSTTCC----GGGGTTTCC-CCEEEESGG
T ss_pred EEECCCCCHHHHHHHHHhcCcEEEEEecCCC---------ccc-CCEE-EeCCcccc----hhhccccCCCCCeEeeCCc
Confidence 9998664 544455446888776532110 000 0000 00 00000 000111112 24566873
Q ss_pred CCCCCCCCCCCcchhhhhhc-cCCCCeEEEeeH----------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhh
Q 039208 153 LAATTSDNKNDDHTCFSWLD-KQPSHCIVFLCF----------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEA 221 (331)
Q Consensus 153 ~~~~~~~~~~~~~~~~~wLd-~~~~~~vVyvsf----------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~ 221 (331)
...- .++..+.-. ..++...|+|+| .+.++|.... ++..+.+....
T Consensus 139 Y~~l-------R~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~~~-~i~vv~G~~~~--------------- 195 (282)
T 3hbm_A 139 YALI-------REEFYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTK-IISIATSSSNP--------------- 195 (282)
T ss_dssp GCCC-------CHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSCTTS-CEEEEECTTCT---------------
T ss_pred cccc-------CHHHHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhhcCC-CEEEEECCCch---------------
Confidence 2211 112221111 112345788988 5566665544 45555555421
Q ss_pred hhhccCchhHHhhh-cCCCcccccccCHH-HhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccc
Q 039208 222 SAELFLPEGFVERT-RDWGLPVKSWAPQV-DVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDP 289 (331)
Q Consensus 222 ~~~~~lp~~f~~~~-~~~~~vv~~W~PQ~-~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG 289 (331)
..+.+.+.. ...++.+..+.++. ++++.+++. +++.|+|+|.+|...+|..||+.+++. |++
T Consensus 196 -----~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~ 269 (282)
T 3hbm_A 196 -----NLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKK-GYE 269 (282)
T ss_dssp -----THHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESSHHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCE
T ss_pred -----HHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCcHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCE
Confidence 111111111 12356666787765 456655554 999999999999999999999999995 999
Q ss_pred eeeh
Q 039208 290 LTVA 293 (331)
Q Consensus 290 ~~l~ 293 (331)
..+.
T Consensus 270 ~~~~ 273 (282)
T 3hbm_A 270 VEYK 273 (282)
T ss_dssp EECG
T ss_pred EEcc
Confidence 8875
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.60 E-value=7.3e-05 Score=64.85 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=41.0
Q ss_pred ccccccCHH-Hhhc-Cccc-------c----chhcCCcEeecccc----cchhhhHHHHHhhhccceeehh
Q 039208 241 PVKSWAPQV-DVLS-HDSV-------V----AVRTGVPMVAWPSN----GDQMVNMAFLVEKIRDPLTVAE 294 (331)
Q Consensus 241 vv~~W~PQ~-~vL~-H~~v-------~----al~~GVP~l~~P~~----~DQ~~na~~v~~~lGvG~~l~~ 294 (331)
.+.+|.++. ++|+ .+++ + ++++|+|+|.+|.- .||..||+++++. |+++.++.
T Consensus 117 ~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~-G~~~~~~~ 186 (224)
T 2jzc_A 117 IGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVEL-GYVWSCAP 186 (224)
T ss_dssp EECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHH-SCCCEECS
T ss_pred EEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHC-CCEEEcCH
Confidence 344666664 6677 4444 4 99999999999984 3699999999995 99987754
No 25
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=96.55 E-value=0.26 Score=45.60 Aligned_cols=41 Identities=7% Similarity=-0.081 Sum_probs=32.6
Q ss_pred CCcccEEEEEcCCC--CCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 4 SWIIIRLFFNPSPG--SSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 4 ~~~~~~i~~~p~p~--~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
...+|||+++.... -|+-..+..|++.|.++| |+|++++..
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G--~~v~v~~~~ 79 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIG--IEARWFVIE 79 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEEcc
Confidence 34568988776432 478889999999999999 999988764
No 26
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=95.50 E-value=0.054 Score=50.57 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=58.0
Q ss_pred CCcccEEEEEcC---C--------CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc---------c-----h---H-
Q 039208 4 SWIIIRLFFNPS---P--------GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR---------G-----Q---L- 54 (331)
Q Consensus 4 ~~~~~~i~~~p~---p--------~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~---------~-----p---~- 54 (331)
...+|||+++.. | .-|+-..+..|++.|.++| |+|++++....... . + .
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 94 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQG--IEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYE 94 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTT--CEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSS
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcC--CEEEEEecCCCCCCcccccccCCeEEEEecCCCcc
Confidence 345689999984 2 2478899999999999999 99999986532110 0 1 0
Q ss_pred ---HHhh---hHHH-HHHHHHhhc-CCCccEEEEcCcch--hHHHHHHHcCCCeEEEecc
Q 039208 55 ---ALLN---SPNL-HKTLIIQSK-TSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 55 ---~~~~---~~~l-~~~l~~l~~-~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~ 104 (331)
.... ...+ ..+++..++ ..++|+|++..... .+..+++.+|+|.+...-.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 154 (438)
T 3c48_A 95 GLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHT 154 (438)
T ss_dssp SCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecC
Confidence 0001 1111 222222122 22499998765332 3344667789998876544
No 27
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=95.45 E-value=0.048 Score=52.09 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=31.8
Q ss_pred CCCCCcccEEEEEcC---C------------CCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 1 MSESWIIIRLFFNPS---P------------GSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~---p------------~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|.++..+|||+++.. | .-|.-..+..|++.|+++| |+|++++..
T Consensus 1 m~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~ 59 (499)
T 2r60_A 1 MVEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG--VQVDIITRR 59 (499)
T ss_dssp ------CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred CccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcC--CeEEEEeCC
Confidence 677777899999874 1 2467788999999999999 999999864
No 28
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=95.41 E-value=0.14 Score=47.27 Aligned_cols=86 Identities=8% Similarity=-0.034 Sum_probs=53.6
Q ss_pred CCcccccccCHHH---hhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh-----
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----- 294 (331)
+.++..+|+|+.+ +++..++. |+++|+|+|+... ......+.+ |.|..++.
T Consensus 311 ~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~~~--~~g~~~~~~d~~~ 384 (439)
T 3fro_A 311 NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDIITN--ETGILVKAGDPGE 384 (439)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHCCT--TTCEEECTTCHHH
T ss_pred CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeEEc--CceEEeCCCCHHH
Confidence 4445568888864 46666665 9999999999754 344444433 67877764
Q ss_pred -----hHHHH----hHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 039208 295 -----RRVIE----GIRAPKEQAVGALSEGGRSLAVVAELAESFR 330 (331)
Q Consensus 295 -----~~lm~----~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~ 330 (331)
.++++ ..+++++.+++.+ +.=|.....+++.+.++
T Consensus 385 la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 428 (439)
T 3fro_A 385 LANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYT 428 (439)
T ss_dssp HHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHH
Confidence 22332 3455666666655 34666666666665543
No 29
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=95.11 E-value=0.11 Score=47.66 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=57.6
Q ss_pred CCcccEEEEEcC---CC-CCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------------hHHH----hh-hHH
Q 039208 4 SWIIIRLFFNPS---PG-SSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-------------QLAL----LN-SPN 61 (331)
Q Consensus 4 ~~~~~~i~~~p~---p~-~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-------------p~~~----~~-~~~ 61 (331)
..++|||+++.. +. -|+-.-+..+++.|.++| |+|++++........ |+.. .. ...
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAG--HEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPA 94 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTT--CEEEEEESCCTTSCCCTTEEECCCCC------------CCHH
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHH
Confidence 345689998873 22 456688999999999999 999999876433200 1100 00 000
Q ss_pred HHHHHHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEecc
Q 039208 62 LHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~~ 104 (331)
....+.++++..++|+|++..... ++..+++..|+|.+...-.
T Consensus 95 ~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 139 (406)
T 2gek_A 95 THRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHT 139 (406)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcC
Confidence 111222233334899998765443 3455666779999886543
No 30
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=94.17 E-value=0.032 Score=50.40 Aligned_cols=87 Identities=7% Similarity=0.009 Sum_probs=53.8
Q ss_pred ccEEEEEcCC----------------CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHHh-hhHHHHHHH
Q 039208 7 IIRLFFNPSP----------------GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLALL-NSPNLHKTL 66 (331)
Q Consensus 7 ~~~i~~~p~p----------------~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~~-~~~~l~~~l 66 (331)
+|||+++... .-|.-.-...|++.|.++| |+|++++........ ..... ....+...+
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G--~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELG--HEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWL 80 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTT--CEEEEESCTTSCCCSTTEEECSCCSHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcC--CeEEEEecCCCCCCCCcceeccCCcHHHHHHHH
Confidence 5888888754 2456778899999999999 999999875432211 11100 011223333
Q ss_pred HHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEE
Q 039208 67 IIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 67 ~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
+..++|+|++....... .+++..|+| +..
T Consensus 81 ----~~~~~Dvi~~~~~~~~~-~~~~~~~~p-v~~ 109 (342)
T 2iuy_A 81 ----RTADVDVVHDHSGGVIG-PAGLPPGTA-FIS 109 (342)
T ss_dssp ----HHCCCSEEEECSSSSSC-STTCCTTCE-EEE
T ss_pred ----HhcCCCEEEECCchhhH-HHHhhcCCC-EEE
Confidence 34589999887644321 125667999 654
No 31
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=94.11 E-value=0.18 Score=46.00 Aligned_cols=96 Identities=9% Similarity=-0.035 Sum_probs=52.2
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCCcc---------hH-H------------Hh
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTLRG---------QL-A------------LL 57 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~---------p~-~------------~~ 57 (331)
|++++ |||+++... .++......|+++|.++ | |+|.++++....... .+ . ..
T Consensus 1 ~~~~m--mkIl~v~~~-~~~~~~~~~l~~~L~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (376)
T 1v4v_A 1 MEGGM--KRVVLAFGT-RPEATKMAPVYLALRGIPG--LKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDL 75 (376)
T ss_dssp ---CC--EEEEEEECS-HHHHHHHHHHHHHHHTSTT--EEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred CCCCc--eEEEEEEec-cHHHHHHHHHHHHHHhCCC--CceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHH
Confidence 66643 789888732 33445567889999998 8 998776653211100 00 0 00
Q ss_pred hhHHHHHHHHHhhcCCCccEEEEc--Ccchh-HHHHHHHcCCCeEEEe
Q 039208 58 NSPNLHKTLIIQSKTSNLKTLIID--FFHKV-ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 58 ~~~~l~~~l~~l~~~~~~d~vI~D--~~~~~-~~~vA~~~giP~v~~~ 102 (331)
....+. .+.++++..+||+|++- ....| +..+|+.+|||.+.+.
T Consensus 76 ~~~~~~-~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 122 (376)
T 1v4v_A 76 AARILP-QAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (376)
T ss_dssp HHHHHH-HHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEe
Confidence 001111 12233345689999883 23334 3556777899987553
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=92.05 E-value=0.61 Score=43.32 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCCCCcc----------h------------HHHhhhH
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFPTLRG----------Q------------LALLNSP 60 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~----------p------------~~~~~~~ 60 (331)
++.++||+++. +.++...=+.+|.++|.++ | +++.++.+....+.. | .......
T Consensus 22 ~~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~--~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 98 (396)
T 3dzc_A 22 SNAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNR--FVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSK 98 (396)
T ss_dssp --CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTT--EEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred hCCCCeEEEEE-eccHhHHHHHHHHHHHHhCCC--CcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHHHHH
Confidence 34556887776 6777888889999999987 6 888755543221100 1 0111111
Q ss_pred HHHHHHHHhhcCCCccEEEE--cCcchhH-HHHHHHcCCCeEEEe
Q 039208 61 NLHKTLIIQSKTSNLKTLII--DFFHKVA-LQVSCSLNIPTYLFY 102 (331)
Q Consensus 61 ~l~~~l~~l~~~~~~d~vI~--D~~~~~~-~~vA~~~giP~v~~~ 102 (331)
.+.. +.++++..+||+|+. |....+. ..+|+..|||.+.+.
T Consensus 99 ~~~~-l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ 142 (396)
T 3dzc_A 99 ILLG-MQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp HHHH-HHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred HHHH-HHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 1111 122223458999976 3333343 567777899987653
No 33
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=91.92 E-value=0.14 Score=46.60 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=55.8
Q ss_pred CcccEEEEEcC--C--CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc-------c-------hH-HHhhhHHHHHH
Q 039208 5 WIIIRLFFNPS--P--GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR-------G-------QL-ALLNSPNLHKT 65 (331)
Q Consensus 5 ~~~~~i~~~p~--p--~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~-------~-------p~-~~~~~~~l~~~ 65 (331)
+.+|||+++.. + .-|+-.-+..|++.| +| |+|++++....... . +. ...........
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DP--ESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHA 77 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CG--GGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHH
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cC--CeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHH
Confidence 35678888874 3 357888899999999 69 99999987543220 0 00 00000111122
Q ss_pred HHHhhcCCCccEEEEcCcch--hHHHHHHHcCCCeEEEe
Q 039208 66 LIIQSKTSNLKTLIIDFFHK--VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~ 102 (331)
+.++++..++|+|++..... +...+++++|+|.+++.
T Consensus 78 l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (394)
T 3okp_A 78 MAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIAS 116 (394)
T ss_dssp HHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEE
T ss_pred HHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEE
Confidence 22333445899998764333 55667888999955543
No 34
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=90.72 E-value=1.4 Score=40.06 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCC-CCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 7 IIRLFFNPSPGS-SHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 7 ~~~i~~~p~p~~-gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
++++....+|.. |.-.-...|++.|+++| |+|++++...
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~ 54 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERG--HEIHFITSGL 54 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCC--CEEEEEeCCC
Confidence 356777777764 57788889999999999 9999998753
No 35
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=90.35 E-value=1.4 Score=40.97 Aligned_cols=90 Identities=12% Similarity=0.005 Sum_probs=53.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCcc----------h------------HH---Hhh
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPTLRG----------Q------------LA---LLN 58 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~~----------p------------~~---~~~ 58 (331)
+++||+++. +.++...=+.+|.++|.++ | +++.++.+....+.. | .. ...
T Consensus 26 ~~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~--~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~ 102 (403)
T 3ot5_A 26 AKIKVMSIF-GTRPEAIKMAPLVLALEKEPET--FESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRV 102 (403)
T ss_dssp CCEEEEEEE-CSHHHHHHHHHHHHHHHTCTTT--EEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHH
T ss_pred ccceEEEEE-ecChhHHHHHHHHHHHHhCCCC--CcEEEEEecCcHHHHHHHHHhcCCCCCcccccCCCCCCHHHHHHHH
Confidence 346887776 5677777889999999987 6 887766543221110 1 01 111
Q ss_pred hHHHHHHHHHhhcCCCccEEEE--cCcchh-HHHHHHHcCCCeEEEe
Q 039208 59 SPNLHKTLIIQSKTSNLKTLII--DFFHKV-ALQVSCSLNIPTYLFY 102 (331)
Q Consensus 59 ~~~l~~~l~~l~~~~~~d~vI~--D~~~~~-~~~vA~~~giP~v~~~ 102 (331)
...+.+.+ +..+||+|+. |....+ +..+|+.+|||.+.+.
T Consensus 103 ~~~l~~~l----~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 103 MNGINEVI----AAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp HHHHHHHH----HHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHH----HHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 22222333 3458999976 223334 4677888999987654
No 36
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=89.96 E-value=2.9 Score=36.35 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h-----------HHHhhhHHH--HHH
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q-----------LALLNSPNL--HKT 65 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p-----------~~~~~~~~l--~~~ 65 (331)
|+|||+..==|. |--=+..|+++|.+.| | |+++.+....+-. | +.-...|.- .-.
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g--~-V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~v~GTPaDCV~la 76 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG--R-VVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLG 76 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS--E-EEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHH
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC--C-EEEEeeCCCCcccccCcCCCCCceeEEeeccceeecCCChHHHHhhh
Confidence 457777774443 3344678889999998 5 8888886554321 2 000011111 112
Q ss_pred HHHhhcCCCccEEEEc----------Ccch---hHHHHHHHcCCCeEEEecc
Q 039208 66 LIIQSKTSNLKTLIID----------FFHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D----------~~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
+..++...+||+||+- .++. .++.-|.-+|||.+.++..
T Consensus 77 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 77 YRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 3344455689999983 3333 3444555579999999853
No 37
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=89.59 E-value=1 Score=40.74 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----h-----H-------------HHhhhHHHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----Q-----L-------------ALLNSPNLHKT 65 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----p-----~-------------~~~~~~~l~~~ 65 (331)
|||+++.. ..++...+.+|+++|.++|+ +++.++.+....... + + .+.....+. .
T Consensus 1 mkIl~v~~-~~~~~~~~~~l~~~L~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 77 (384)
T 1vgv_A 1 MKVLTVFG-TRPEAIKMAPLVHALAKDPF-FEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILE-G 77 (384)
T ss_dssp CEEEEEEC-SHHHHHHHHHHHHHHHHSTT-CEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHH-H
T ss_pred CeEEEEec-ccHHHHHHHHHHHHHHhCCC-CceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHH-H
Confidence 57888753 45778888999999999983 165544332111100 0 0 000000111 1
Q ss_pred HHHhhcCCCccEEEEcC--cchhH-HHHHHHcCCCeEEEec
Q 039208 66 LIIQSKTSNLKTLIIDF--FHKVA-LQVSCSLNIPTYLFYA 103 (331)
Q Consensus 66 l~~l~~~~~~d~vI~D~--~~~~~-~~vA~~~giP~v~~~~ 103 (331)
+.++++..+||+|++-. ...|. ..+|+..|+|.+....
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~ 118 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEA 118 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESC
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 22333445899998743 33343 4556677999886543
No 38
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=88.68 E-value=3 Score=33.36 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=34.7
Q ss_pred CCcccccccCHH---HhhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceee
Q 039208 238 WGLPVKSWAPQV---DVLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTV 292 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l 292 (331)
.++...+|+|+. ++++..++. |+++|+|+|+... ..+...+.+. +.|+.+
T Consensus 78 ~~v~~~g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~ 145 (177)
T 2f9f_A 78 DNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINE-KTGYLV 145 (177)
T ss_dssp TTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBT-TTEEEE
T ss_pred CcEEEeCCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCC-CccEEe
Confidence 466666999983 455555554 9999999999754 4555666553 677766
No 39
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=88.26 E-value=4.4 Score=30.03 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+++..+.+|+++- .|-.-...+.+.|.+.| ++|+.+.+ . .+.++.+ +..+||+||.
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~ 57 (130)
T 3eod_A 1 MTQPLVGKQILIVE----DEQVFRSLLDSWFSSLG--ATTVLAAD---------G-------VDALELL-GGFTPDLMIC 57 (130)
T ss_dssp --CTTTTCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESC---------H-------HHHHHHH-TTCCCSEEEE
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCC--ceEEEeCC---------H-------HHHHHHH-hcCCCCEEEE
Confidence 78888888999886 45566777888899999 99876432 1 2233322 4457999999
Q ss_pred cCcch--hHHHHHHH-----cCCCeEEEeccc
Q 039208 81 DFFHK--VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 81 D~~~~--~~~~vA~~-----~giP~v~~~~~~ 105 (331)
|.... -+..+.++ -++|.+.++...
T Consensus 58 d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 58 DIAMPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp CCC-----CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred ecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 97654 12223222 258888776554
No 40
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=88.19 E-value=1.7 Score=39.12 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=53.2
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------h-----HH-------HhhhHHHH
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------Q-----LA-------LLNSPNLH 63 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p-----~~-------~~~~~~l~ 63 (331)
.+|||+++. ...++......++++|.+++..|+|+++++....... + .. ......+.
T Consensus 7 ~~mkIl~v~-~~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T 3beo_A 7 ERLKVMTIF-GTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLE 85 (375)
T ss_dssp SCEEEEEEE-CSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHHH
T ss_pred cCceEEEEe-cCcHHHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHHHHHH
Confidence 358999887 3467788888999999887211788766653221100 0 00 00000011
Q ss_pred HHHHHhhcCCCccEEEEcCc-ch--hHHHHHHHcCCCeEEEe
Q 039208 64 KTLIIQSKTSNLKTLIIDFF-HK--VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 64 ~~l~~l~~~~~~d~vI~D~~-~~--~~~~vA~~~giP~v~~~ 102 (331)
. +.++++..+||+|++... .. .+..+|+..|+|.+.+.
T Consensus 86 ~-l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~ 126 (375)
T 3beo_A 86 G-LDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVE 126 (375)
T ss_dssp H-HHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEES
T ss_pred H-HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEe
Confidence 1 223334458999988532 21 23356677899998643
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.73 E-value=2.1 Score=43.15 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=56.8
Q ss_pred CCCeEEEeeH------------HHHHHHHhcCCcEEEEEeCCCCchhhhhhhhhhchhhhhhccCchhHHhh-hcCCCcc
Q 039208 175 PSHCIVFLCF------------EMAMRLKRSGAAFLWVVLFPPLEDEFRQTLTVADAEASAELFLPEGFVER-TRDWGLP 241 (331)
Q Consensus 175 ~~~~vVyvsf------------~l~~al~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~~~-~~~~~~v 241 (331)
++..|||.|| .-.+-|++.+...||.++.+... + ..+-..+.+. +...-++
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~------------~----~~l~~~~~~~gi~~~r~~ 583 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG------------E----PNIQQYAQNMGLPQNRII 583 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGG------------H----HHHHHHHHHTTCCGGGEE
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHH------------H----HHHHHHHHhcCCCcCeEE
Confidence 4567999999 34556667788899998865211 0 0011111110 1112234
Q ss_pred cccccCHHHhh---cCcccc--------------chhcCCcEeecccccchhh---hHHHHHhhhccceeeh
Q 039208 242 VKSWAPQVDVL---SHDSVV--------------AVRTGVPMVAWPSNGDQMV---NMAFLVEKIRDPLTVA 293 (331)
Q Consensus 242 v~~W~PQ~~vL---~H~~v~--------------al~~GVP~l~~P~~~DQ~~---na~~v~~~lGvG~~l~ 293 (331)
+.+..|..+-| .+.++. ||+.|||+|++| ++++. -+..+.. +|+.--+.
T Consensus 584 f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~--g~~~~sR~~~s~l~~-~gl~e~ia 652 (723)
T 4gyw_A 584 FSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP--GETLASRVAASQLTC-LGCLELIA 652 (723)
T ss_dssp EEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC--CSSGGGTHHHHHHHH-HTCGGGBC
T ss_pred ECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc--CCCccHhHHHHHHHH-cCCccccc
Confidence 55777876544 445554 999999999998 33332 2334444 46655453
No 42
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=85.51 E-value=6.3 Score=30.23 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+.+.++++|+++- .+-.-...|...|.+.| ++|+.+.+ . .+.++.+ +..+||+||.
T Consensus 1 Ms~~~~~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~ 57 (154)
T 2rjn_A 1 MSLNYKNYTVMLVD----DEQPILNSLKRLIKRLG--CNIITFTS---------P-------LDALEAL-KGTSVQLVIS 57 (154)
T ss_dssp ---CCSCCEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESC---------H-------HHHHHHH-TTSCCSEEEE
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHcC--CeEEEeCC---------H-------HHHHHHH-hcCCCCEEEE
Confidence 77777788888875 45566677888888899 99875433 1 2233322 3457999999
Q ss_pred cCcch--hHHHHHHH----c-CCCeEEEecccH
Q 039208 81 DFFHK--VALQVSCS----L-NIPTYLFYASSA 106 (331)
Q Consensus 81 D~~~~--~~~~vA~~----~-giP~v~~~~~~~ 106 (331)
|.... -+..+.++ . ++|.+.++....
T Consensus 58 d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 58 DMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp ESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred ecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 97654 23333332 2 688877765443
No 43
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=85.25 E-value=6.8 Score=30.18 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=49.1
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+-+..+++|+++- .+-.-...|.+.|.+.| ++|..+.+ . .+.++.+ +..+||+||.
T Consensus 1 M~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~l-~~~~~dlii~ 57 (154)
T 3gt7_A 1 MSLSNRAGEILIVE----DSPTQAEHLKHILEETG--YQTEHVRN---------G-------REAVRFL-SLTRPDLIIS 57 (154)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS---------H-------HHHHHHH-TTCCCSEEEE
T ss_pred CCcccCCCcEEEEe----CCHHHHHHHHHHHHHCC--CEEEEeCC---------H-------HHHHHHH-HhCCCCEEEE
Confidence 66666778888875 46666777888888889 99865533 1 2233322 3458999999
Q ss_pred cCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 81 DFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 81 D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
|.... -+..+.++ .++|.+.++...
T Consensus 58 D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 58 DVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp ESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 97654 23333332 367888776543
No 44
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=85.16 E-value=1.6 Score=39.13 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=29.3
Q ss_pred cEEEEEcC---CCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPS---PGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~---p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||+++.. |.-|.-.-+..|++.|+++| |+|++++..
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~ 40 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARG--HHVRVYTQS 40 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTT--CCEEEEESE
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCC--CeEEEEecC
Confidence 46777642 34567788999999999999 999999875
No 45
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=84.96 E-value=2.8 Score=38.00 Aligned_cols=84 Identities=14% Similarity=0.006 Sum_probs=49.2
Q ss_pred CCcccccccCHH---HhhcCcccc----------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh----
Q 039208 238 WGLPVKSWAPQV---DVLSHDSVV----------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE---- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~~v~----------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~---- 294 (331)
.++...+|+|+. ++++..++. |+++|+|+|+.+. ......+.+. +.|+.++.
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~d~~ 337 (406)
T 2gek_A 263 GHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADG-DAGRLVPVDDAD 337 (406)
T ss_dssp GGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTT-TSSEECCTTCHH
T ss_pred CcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCC-CceEEeCCCCHH
Confidence 455666888875 333333322 9999999999866 4566666663 67777743
Q ss_pred ------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 295 ------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 295 ------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
+++++ ..+++++.+++... .-|..+..+++.+
T Consensus 338 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~ 378 (406)
T 2gek_A 338 GMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSAQIMR 378 (406)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHGG-GGBHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 33333 34456666666555 4444444444443
No 46
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=83.99 E-value=1.7 Score=39.51 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=41.0
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh-hHHHH--------hHHHHHHHHHH---HHhcCCChHHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE-RRVIE--------GIRAPKEQAVG---ALSEGGRSLAVVAELA 326 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~-~~lm~--------~a~~l~~~~~~---a~~~ggss~~~l~~~v 326 (331)
+|++|+|+|+++ ...++..+.+. |+|+.++. +++.+ .-+++++.+++ .+..|-...+.+.+-+
T Consensus 260 ymA~G~PVI~~~----~~~~~~~v~~~-~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~ 334 (339)
T 3rhz_A 260 FLAAGIPVIVQE----GIANQELIENN-GLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRRLLTESV 334 (339)
T ss_dssp HHHHTCCEEEET----TCTTTHHHHHH-TCEEEESSHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHH
T ss_pred HHHcCCCEEEcc----ChhHHHHHHhC-CeEEEeCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 699999999876 45788888885 99999865 22211 22233333332 2445666666666665
Q ss_pred HHH
Q 039208 327 ESF 329 (331)
Q Consensus 327 ~~~ 329 (331)
..+
T Consensus 335 ~~~ 337 (339)
T 3rhz_A 335 FQA 337 (339)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 47
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=81.76 E-value=1.6 Score=42.25 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCCC--cccEEEEEcC---CC--CCC-HHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 1 MSESW--IIIRLFFNPS---PG--SSH-LLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 1 ~~~~~--~~~~i~~~p~---p~--~gH-~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
|+... ..|||+++++ |. .|= -.-...|+++|+++| |+|+++++.+.
T Consensus 1 ~~~~~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G--~~V~Vi~P~Y~ 54 (536)
T 3vue_A 1 MAHHHHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANG--HRVMVISPRYD 54 (536)
T ss_dssp -------CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCS
T ss_pred CCcccCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcC--CeEEEEecCch
Confidence 55533 4689999963 21 121 134678999999999 99999997653
No 48
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=80.43 E-value=3.9 Score=36.52 Aligned_cols=93 Identities=8% Similarity=-0.005 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHH--------h---hhHHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLAL--------L---NSPNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~--------~---~~~~l~~~l~~l~~~~ 73 (331)
|||+++...+.|++.-..++.+.|.++-|+.+|++++.+...... |.++ . ....+.++.+.+ +..
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~p~i~~v~~~~~~~~~~~~~~~~~l~~~l-~~~ 79 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSL-REK 79 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CHHHHHHHHHHT-TTT
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCccCEEEEecCCccccchHHHHHHHHHH-Hhc
Confidence 579999888889999999999999998444999999975322110 2110 0 111223334433 556
Q ss_pred CccEEEEcCcc-hhHHHHHHHcCCCeEEEe
Q 039208 74 NLKTLIIDFFH-KVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 74 ~~d~vI~D~~~-~~~~~vA~~~giP~v~~~ 102 (331)
++|++| |... .-...++...|+|....+
T Consensus 80 ~~D~vi-d~~~~~~sa~~~~~~~~~~~ig~ 108 (348)
T 1psw_A 80 RYDRAY-VLPNSFKSALVPLFAGIPHRTGW 108 (348)
T ss_dssp TCSEEE-ECSCCSGGGHHHHHTTCSEEEEE
T ss_pred CCCEEE-ECCCChHHHHHHHHhCCCEEecc
Confidence 899988 4332 234566777799974433
No 49
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=80.04 E-value=4.3 Score=41.52 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHH----H---hHHHHHHHHHHHHhcCCChHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVI----E---GIRAPKEQAVGALSEGGRSLAV 321 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm----~---~a~~l~~~~~~a~~~ggss~~~ 321 (331)
|+++|+|+|+. |-......+.+. +.|+-++. .+++ . ..+++++.+++.+.+.=|-...
T Consensus 684 AMA~G~PVIas----d~GG~~EiV~dg-~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~ 758 (816)
T 3s28_A 684 AMTCGLPTFAT----CKGGPAEIIVHG-KSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIY 758 (816)
T ss_dssp HHHTTCCEEEE----SSBTHHHHCCBT-TTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHcCCCEEEe----CCCChHHHHccC-CcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999996 444556666563 67877764 2222 2 4455666666655555555555
Q ss_pred HHHHHHH
Q 039208 322 VAELAES 328 (331)
Q Consensus 322 l~~~v~~ 328 (331)
.+++++-
T Consensus 759 a~~ll~l 765 (816)
T 3s28_A 759 SQRLLTL 765 (816)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 50
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=79.28 E-value=2.1 Score=39.44 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCcccccccCHH---HhhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh-----
Q 039208 238 WGLPVKSWAPQV---DVLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----- 294 (331)
.++...+|+|+. ++++..++. |+++|+|+|+.+. ......+.+. +.|+.++.
T Consensus 306 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~d~~~ 380 (438)
T 3c48_A 306 KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAEG-ETGLLVDGHSPHA 380 (438)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCBT-TTEEEESSCCHHH
T ss_pred CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhCC-CcEEECCCCCHHH
Confidence 456666899874 455555554 9999999999764 3455566563 67777653
Q ss_pred -----hHHHH---hHHHHHHHHHHHHhc
Q 039208 295 -----RRVIE---GIRAPKEQAVGALSE 314 (331)
Q Consensus 295 -----~~lm~---~a~~l~~~~~~a~~~ 314 (331)
+++++ ..+++++.+++.+.+
T Consensus 381 la~~i~~l~~~~~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 381 WADALATLLDDDETRIRMGEDAVEHART 408 (438)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 23333 334555555555544
No 51
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=78.96 E-value=21 Score=30.84 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h---------H-HHh-hhHH--HHHHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q---------L-ALL-NSPN--LHKTL 66 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p---------~-~~~-~~~~--l~~~l 66 (331)
||||+..==|. |--=+..|+++|.+.| +|+++.+...++-. | + +.. ..|. ..-.+
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~l~~~g---~V~VVAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~v~GTPaDCV~lal 77 (251)
T 2phj_A 2 PTFLLVNDDGY-FSPGINALREALKSLG---RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLGY 77 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS---EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHHH
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHhcC---CEEEEecCCCccCCccceecCCCeEEEEecCCCeEEECCCHHHHHHHHH
Confidence 68888875443 3445778899998877 89999887655421 2 1 000 0111 11123
Q ss_pred HHhhcCCCccEEEEcC----------cch---hHHHHHHHcCCCeEEEecc
Q 039208 67 IIQSKTSNLKTLIIDF----------FHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 67 ~~l~~~~~~d~vI~D~----------~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
..++...+||+||+-. ++. .++.-|..+|||.+.|+..
T Consensus 78 ~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 78 RVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 4444335799999753 333 3344555579999999863
No 52
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=77.50 E-value=12 Score=30.81 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=47.0
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+.+..+++|+++- .|-.-...|...|...| ++|..+.+ . .+.++.+ +..+||+||.
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~~-~~~~~dlvll 57 (233)
T 1ys7_A 1 MDTGVTSPRVLVVD----DDSDVLASLERGLRLSG--FEVATAVD---------G-------AEALRSA-TENRPDAIVL 57 (233)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEE
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCC--CEEEEECC---------H-------HHHHHHH-HhCCCCEEEE
Confidence 77777788988875 45566677888888889 98874432 1 1122222 2247999999
Q ss_pred cCcch--hHHHHHHH-----cCCCeEEEecc
Q 039208 81 DFFHK--VALQVSCS-----LNIPTYLFYAS 104 (331)
Q Consensus 81 D~~~~--~~~~vA~~-----~giP~v~~~~~ 104 (331)
|...+ -+..+.++ .++|.+.++..
T Consensus 58 D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 58 DINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp ESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 98654 34443332 26888777643
No 53
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=75.91 E-value=1.7 Score=40.49 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=30.8
Q ss_pred CcccEEEEEcCC-CC----CCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 5 WIIIRLFFNPSP-GS----SHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 5 ~~~~~i~~~p~p-~~----gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
.++|||+++... .. |=..-...|+++|+++| |+|++++...
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~G--heV~Vvt~~~ 89 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKK--FKKRIILTDA 89 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTT--CEEEEEESSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcC--CceEEEEecC
Confidence 456898877733 22 32346889999999999 9999999753
No 54
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=74.65 E-value=7.8 Score=35.26 Aligned_cols=39 Identities=3% Similarity=0.039 Sum_probs=31.0
Q ss_pred ccEEEEEcCC-----CCCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 7 IIRLFFNPSP-----GSSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 7 ~~~i~~~p~p-----~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
+|||+++..- .-|--.-+..|++.|+++| |+|+++++..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G--~~V~v~~~~~ 45 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLG--HEVLVFTPSH 45 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTT--CEEEEEEECT
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 6899988732 2355567899999999999 9999999653
No 55
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=74.54 E-value=6 Score=35.83 Aligned_cols=94 Identities=7% Similarity=-0.066 Sum_probs=62.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---hHHH-----------hhhHHHHHHHHHhhc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG---QLAL-----------LNSPNLHKTLIIQSK 71 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~---p~~~-----------~~~~~l~~~l~~l~~ 71 (331)
+..||+++-..+.|++.-+.++.+.|.++-|+.+|++++.+...... |.++ .....+..++..+ +
T Consensus 7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~l~~~L-r 85 (349)
T 3tov_A 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNPNIDELIVVDKKGRHNSISGLNEVAREI-N 85 (349)
T ss_dssp TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCSEEEEECCSSHHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCCccEEEEeCcccccccHHHHHHHHHHH-h
Confidence 45689999999999999999999999998555999999986543221 3111 0111222333333 4
Q ss_pred CCCc-cEEEEcCcchhHHHHHHHcCCCeEE
Q 039208 72 TSNL-KTLIIDFFHKVALQVSCSLNIPTYL 100 (331)
Q Consensus 72 ~~~~-d~vI~D~~~~~~~~vA~~~giP~v~ 100 (331)
..++ |++|.=....-...++.-.|+|...
T Consensus 86 ~~~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 86 AKGKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp HHCCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred hCCCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 4589 9888544444455677777999654
No 56
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=73.92 E-value=11 Score=28.01 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=47.0
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+....+.+|+++- .+-.-...|...|.+.| ++|+.+.+ . .+.+..+.+..+||+||.
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~~~~~~~~dlvi~ 58 (136)
T 3hdv_A 1 MSLVAARPLVLVVD----DNAVNREALILYLKSRG--IDAVGADG---------A-------EEARLYLHYQKRIGLMIT 58 (136)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTT--CCEEEESS---------H-------HHHHHHHHHCTTEEEEEE
T ss_pred CCCCCCCCeEEEEC----CCHHHHHHHHHHHHHcC--ceEEEeCC---------H-------HHHHHHHHhCCCCcEEEE
Confidence 77666778888876 45566677888888889 98876433 1 122222222335999999
Q ss_pred cCcch--hHHHHHHH------cCCCeEEEeccc
Q 039208 81 DFFHK--VALQVSCS------LNIPTYLFYASS 105 (331)
Q Consensus 81 D~~~~--~~~~vA~~------~giP~v~~~~~~ 105 (331)
|.... -+..+.++ .++|.+.++...
T Consensus 59 D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 59 DLRMQPESGLDLIRTIRASERAALSIIVVSGDT 91 (136)
T ss_dssp CSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSC
T ss_pred eccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCC
Confidence 98654 23444332 246666665443
No 57
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=71.95 E-value=23 Score=26.81 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=48.3
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCc
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
...+++|+++- .+-.-...|...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|..
T Consensus 11 ~~~~~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 11 VTRRPEILLVD----SQEVILQRLQQLLSPLP--YTLHFARD---------A-------TQALQLL-ASREVDLVISAAH 67 (153)
T ss_dssp CCSCCEEEEEC----SCHHHHHHHHHHHTTSS--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESC
T ss_pred ccCCceEEEEC----CCHHHHHHHHHHhcccC--cEEEEECC---------H-------HHHHHHH-HcCCCCEEEEeCC
Confidence 34456888875 45566777888888899 99876543 1 1222222 2347999999986
Q ss_pred ch--hHHHHHHH-----cCCCeEEEeccc
Q 039208 84 HK--VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 84 ~~--~~~~vA~~-----~giP~v~~~~~~ 105 (331)
.. -+..+.++ -++|.+.++...
T Consensus 68 l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 68 LPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp CSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred CCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 54 23333332 257877766543
No 58
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=71.34 E-value=16 Score=27.09 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=47.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+++|+++- .|-.-...|...|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|...+
T Consensus 5 ~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~D~~l~ 61 (136)
T 3kto_A 5 HHPIIYLVD----HQKDARAALSKLLSPLD--VTIQCFAS---------A-------ESFMRQQ-ISDDAIGMIIEAHLE 61 (136)
T ss_dssp --CEEEEEC----SCHHHHHHHHHHHTTSS--SEEEEESS---------H-------HHHTTSC-CCTTEEEEEEETTGG
T ss_pred CCCeEEEEc----CCHHHHHHHHHHHHHCC--cEEEEeCC---------H-------HHHHHHH-hccCCCEEEEeCcCC
Confidence 446788874 46666677888888889 99875433 1 2222222 445799999997654
Q ss_pred h----HHHHHHH-----cCCCeEEEecccH
Q 039208 86 V----ALQVSCS-----LNIPTYLFYASSA 106 (331)
Q Consensus 86 ~----~~~vA~~-----~giP~v~~~~~~~ 106 (331)
- +..+.++ .++|.+.++....
T Consensus 62 ~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 62 DKKDSGIELLETLVKRGFHLPTIVMASSSD 91 (136)
T ss_dssp GBTTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred CCCccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence 3 3344433 2688877765443
No 59
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=70.22 E-value=29 Score=25.61 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=46.3
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
++++|+++- .+-.-...|...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|....
T Consensus 5 ~~~~iLivd----d~~~~~~~l~~~l~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~d~~l~ 61 (140)
T 3grc_A 5 PRPRILICE----DDPDIARLLNLMLEKGG--FDSDMVHS---------A-------AQALEQV-ARRPYAAMTVDLNLP 61 (140)
T ss_dssp CCSEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEECS---------H-------HHHHHHH-HHSCCSEEEECSCCS
T ss_pred CCCCEEEEc----CCHHHHHHHHHHHHHCC--CeEEEECC---------H-------HHHHHHH-HhCCCCEEEEeCCCC
Confidence 346888874 45566677888888899 99865543 1 1222222 234799999997654
Q ss_pred --hHHHHHHH-------cCCCeEEEecc
Q 039208 86 --VALQVSCS-------LNIPTYLFYAS 104 (331)
Q Consensus 86 --~~~~vA~~-------~giP~v~~~~~ 104 (331)
-+..+.++ .++|.+.++..
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 62 DQDGVSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp SSCHHHHHHHHHTSGGGTTCEEEEECTT
T ss_pred CCCHHHHHHHHHhCcccCCCCEEEEecC
Confidence 23333332 25777766544
No 60
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=69.75 E-value=19 Score=26.70 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=38.7
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+.+..+++|+++- .+-.-...|...|.+.| ++|+.+.+ . .+.++.+ +..++|+||.
T Consensus 1 M~~~~~~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlii~ 57 (142)
T 3cg4_A 1 MSLAEHKGDVMIVD----DDAHVRIAVKTILSDAG--FHIISADS---------G-------GQCIDLL-KKGFSGVVLL 57 (142)
T ss_dssp -----CCCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HTCCCEEEEE
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHCC--eEEEEeCC---------H-------HHHHHHH-HhcCCCEEEE
Confidence 66667778888885 45666778888888899 98875443 1 2222222 2347999999
Q ss_pred cCcch
Q 039208 81 DFFHK 85 (331)
Q Consensus 81 D~~~~ 85 (331)
|....
T Consensus 58 d~~l~ 62 (142)
T 3cg4_A 58 DIMMP 62 (142)
T ss_dssp ESCCS
T ss_pred eCCCC
Confidence 97653
No 61
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=69.06 E-value=22 Score=32.70 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc--c---------hHHHhhhHHHHHHHHHhhcCCCcc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR--G---------QLALLNSPNLHKTLIIQSKTSNLK 76 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~--~---------p~~~~~~~~l~~~l~~l~~~~~~d 76 (331)
.||+++.. ++ |... +.+++.+.| ++|+++.+...... . +.. .-...+.+.+.++.+..++|
T Consensus 6 k~l~Il~~-~~-~~~~---i~~aa~~lG--~~vv~v~~~~~~~~~~~~~~d~~~~~~~~-~d~~~~~~~~~~~~~~~~id 77 (425)
T 3vot_A 6 KNLAIICQ-NK-HLPF---IFEEAERLG--LKVTFFYNSAEDFPGNLPAVERCVPLPLF-EDEEAAMDVVRQTFVEFPFD 77 (425)
T ss_dssp CEEEEECC-CT-TCCH---HHHHHHHTT--CEEEEEEETTSCCCCSCTTEEEEEEECTT-TCHHHHHHHHHHHHHHSCCS
T ss_pred cEEEEECC-Ch-hHHH---HHHHHHHCC--CEEEEEECCCcccccCHhhccEEEecCCC-CCHHHHHHHHHHhhhhcCCC
Confidence 36777753 33 2222 456677789 99998865422110 0 111 01122334444444456899
Q ss_pred EEEE--cCcchhHHHHHHHcCCCe
Q 039208 77 TLII--DFFHKVALQVSCSLNIPT 98 (331)
Q Consensus 77 ~vI~--D~~~~~~~~vA~~~giP~ 98 (331)
.|+. |.....+..+|+++|+|.
T Consensus 78 ~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 78 GVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCSS
T ss_pred EEEECCchhHHHHHHHHHHcCCCC
Confidence 9884 444456778899999993
No 62
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=67.76 E-value=4.6 Score=37.80 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=28.6
Q ss_pred cEEEEEcC---C---CCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPS---P---GSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~---p---~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||+++.. | .-|=-.-+..|++.|+++| |+|+++++.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHG--VRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 57888764 2 1244567889999999999 999999864
No 63
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=67.20 E-value=30 Score=25.04 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=45.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--h
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--V 86 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~ 86 (331)
+|+++- .|-.-...+...|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|...+ -
T Consensus 4 ~ILivd----d~~~~~~~l~~~l~~~g--~~v~~~~~---------~-------~~al~~l-~~~~~dlvllD~~~p~~~ 60 (122)
T 3gl9_A 4 KVLLVD----DSAVLRKIVSFNLKKEG--YEVIEAEN---------G-------QIALEKL-SEFTPDLIVLXIMMPVMD 60 (122)
T ss_dssp EEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-TTBCCSEEEECSCCSSSC
T ss_pred eEEEEe----CCHHHHHHHHHHHHHCC--cEEEEeCC---------H-------HHHHHHH-HhcCCCEEEEeccCCCCc
Confidence 566654 34445566777888889 99875432 1 2233322 345899999998664 3
Q ss_pred HHHHHHHc-------CCCeEEEeccc
Q 039208 87 ALQVSCSL-------NIPTYLFYASS 105 (331)
Q Consensus 87 ~~~vA~~~-------giP~v~~~~~~ 105 (331)
+..+.+++ ++|.+.++...
T Consensus 61 g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 61 GFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHHhcccccCCCEEEEecCC
Confidence 45555432 58888777544
No 64
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=66.62 E-value=26 Score=26.32 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
.++|+++- .|-.-...|...|.+.| ++|+.+.. . .+.++.+ +..+||+||.|...+
T Consensus 14 ~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlvl~D~~mp~ 70 (143)
T 3m6m_D 14 SMRMLVAD----DHEANRMVLQRLLEKAG--HKVLCVNG---------A-------EQVLDAM-AEEDYDAVIVDLHMPG 70 (143)
T ss_dssp -CEEEEEC----SSHHHHHHHHHHHHC----CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESCCSS
T ss_pred cceEEEEe----CCHHHHHHHHHHHHHcC--CeEEEeCC---------H-------HHHHHHH-hcCCCCEEEEeCCCCC
Confidence 46788774 45555667778888889 98875432 1 1222222 234799999998664
Q ss_pred -hHHHHHHHc---------CCCeEEEeccc
Q 039208 86 -VALQVSCSL---------NIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~~---------giP~v~~~~~~ 105 (331)
-+..+.+++ .+|.+.++...
T Consensus 71 ~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 71 MNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred CCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 344444432 37877776543
No 65
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=66.06 E-value=14 Score=35.23 Aligned_cols=40 Identities=13% Similarity=-0.047 Sum_probs=30.4
Q ss_pred CcccEEEEEcCCCCCC--HHHHHHHHHH--HHhcCCceEEEEEeCC
Q 039208 5 WIIIRLFFNPSPGSSH--LLSMDELGKL--ILTHYPYFSVTIIIST 46 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH--~~p~~~la~~--L~~~G~~h~Vt~~~~~ 46 (331)
..++||+++.....+| -.-+..|++. |.++| |+|++++..
T Consensus 203 ~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~--~~v~~~~~~ 246 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPD--LQMHLFATS 246 (568)
T ss_dssp SSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTT--EEEEEEESS
T ss_pred CCCeEEEEECcccccChHHHHHHHHHhhccCCccc--EEEEEEECC
Confidence 4568999988655444 4567888999 67789 999999864
No 66
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=65.89 E-value=21 Score=33.74 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCc---chHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLR---GQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~---~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
.|++++.- -.-..++++.|.+-| .+|+.+.+...... .+.-......+.+ ++++++..++|++|....
T Consensus 314 krv~i~~~-----~~~~~~l~~~L~elG--m~vv~~~~~~~~~~~~~~~~~~v~~~D~~~-le~~i~~~~pDllig~~~- 384 (458)
T 3pdi_B 314 ARTAIAAD-----PDLLLGFDALLRSMG--AHTVAAVVPARAAALVDSPLPSVRVGDLED-LEHAARAGQAQLVIGNSH- 384 (458)
T ss_dssp CEEEEECC-----HHHHHHHHHHHHTTT--CEEEEEEESSCCSCCTTTTSSCEEESHHHH-HHHHHHHHTCSEEEECTT-
T ss_pred CEEEEECC-----cHHHHHHHHHHHHCC--CEEEEEEECCCChhhhhCccCcEEeCCHHH-HHHHHHhcCCCEEEEChh-
Confidence 36666432 233467888888999 99998876543211 0100000112222 223333348999999865
Q ss_pred hhHHHHHHHcCCCeEEE
Q 039208 85 KVALQVSCSLNIPTYLF 101 (331)
Q Consensus 85 ~~~~~vA~~~giP~v~~ 101 (331)
...+|+++|||++.+
T Consensus 385 --~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 385 --ALASARRLGVPLLRA 399 (458)
T ss_dssp --HHHHHHHTTCCEEEC
T ss_pred --HHHHHHHcCCCEEEe
Confidence 678999999998865
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=65.55 E-value=36 Score=24.69 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=44.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
++++|+++- .+-.-...+.+.|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|....
T Consensus 5 ~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlii~d~~l~ 61 (132)
T 3lte_A 5 QSKRILVVD----DDQAMAAAIERVLKRDH--WQVEIAHN---------G-------FDAGIKL-STFEPAIMTLDLSMP 61 (132)
T ss_dssp --CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHTCCSEEEEESCBT
T ss_pred CCccEEEEE----CCHHHHHHHHHHHHHCC--cEEEEeCC---------H-------HHHHHHH-HhcCCCEEEEecCCC
Confidence 346788875 46666677888888899 98875543 1 1122222 234799999998664
Q ss_pred --hHHHHHHHc------CCCeEEEecc
Q 039208 86 --VALQVSCSL------NIPTYLFYAS 104 (331)
Q Consensus 86 --~~~~vA~~~------giP~v~~~~~ 104 (331)
-+..+.+++ ..|.+.+.+.
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 62 KLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp TBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred CCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 244444332 3455555544
No 68
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=65.47 E-value=8 Score=36.35 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCcccccccCHH---HhhcCc----ccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeehh-
Q 039208 238 WGLPVKSWAPQV---DVLSHD----SVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~----~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~- 294 (331)
.++...+|+|+. ++++.. ++. |+++|+|+|+... ......+.+. +.|+.++.
T Consensus 335 ~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~-~~g~l~~~~ 409 (499)
T 2r60_A 335 GKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDGG-KYGVLVDPE 409 (499)
T ss_dssp TTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGGG-TSSEEECTT
T ss_pred ceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcCC-ceEEEeCCC
Confidence 456666888765 355566 554 9999999999864 3455555553 57877753
Q ss_pred ---------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 039208 295 ---------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAELAE 327 (331)
Q Consensus 295 ---------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~v~ 327 (331)
.++++ ..+++++.+++.+.+.=|..+..+++.+
T Consensus 410 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 454 (499)
T 2r60_A 410 DPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLE 454 (499)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22222 3445555555544443444444444443
No 69
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=65.43 E-value=38 Score=24.85 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=48.1
Q ss_pred CCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 2 SESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 2 ~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+.+..+++|+++- .+-.-...|...|.+.| ++|+..... ...+ .+.+.. .+||+||.|
T Consensus 4 ~~~~~~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~~--------~~~a----~~~~~~----~~~dlii~d 61 (140)
T 3cg0_A 4 TASDDLPGVLIVE----DGRLAAATLRIQLESLG--YDVLGVFDN--------GEEA----VRCAPD----LRPDIALVD 61 (140)
T ss_dssp ----CCCEEEEEC----CBHHHHHHHHHHHHHHT--CEEEEEESS--------HHHH----HHHHHH----HCCSEEEEE
T ss_pred ccCCCCceEEEEE----CCHHHHHHHHHHHHHCC--CeeEEEECC--------HHHH----HHHHHh----CCCCEEEEe
Confidence 3445567888875 45566677888888889 998743321 1111 112222 379999999
Q ss_pred Ccch---hHHHHHHH----cCCCeEEEecccH
Q 039208 82 FFHK---VALQVSCS----LNIPTYLFYASSA 106 (331)
Q Consensus 82 ~~~~---~~~~vA~~----~giP~v~~~~~~~ 106 (331)
.... -+..+.++ .++|.+.++....
T Consensus 62 ~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 62 IMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp SSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 7542 33444333 4789888776543
No 70
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=65.25 E-value=5.6 Score=37.21 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=28.1
Q ss_pred cEEEEEcC---C---CCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPS---P---GSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~---p---~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|||+++.. | .-|=-.-...|++.|+++| |+|+++++.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADG--VDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcC--CEEEEEecC
Confidence 57888764 2 1233566789999999999 999999864
No 71
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=64.69 E-value=40 Score=24.89 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=45.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+.+|+++- .|-.-...+...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|...+
T Consensus 4 ~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlvl~D~~lp~ 60 (136)
T 3t6k_A 4 PHTLLIVD----DDDTVAEMLELVLRGAG--YEVRRAAS---------G-------EEALQQI-YKNLPDALICDVLLPG 60 (136)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESCCSS
T ss_pred CCEEEEEe----CCHHHHHHHHHHHHHCC--CEEEEeCC---------H-------HHHHHHH-HhCCCCEEEEeCCCCC
Confidence 45666664 34455667778888889 98875432 1 1222222 234799999998664
Q ss_pred -hHHHHHHH-------cCCCeEEEeccc
Q 039208 86 -VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-------~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 61 ~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 61 IDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp SCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred CCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 24444432 258888776544
No 72
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=64.46 E-value=21 Score=28.38 Aligned_cols=39 Identities=8% Similarity=-0.061 Sum_probs=34.8
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
..+.++++.+.++-.|-.-..-++..|..+| ++|.++..
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G--~eVi~lG~ 54 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAG--FEVVYTGL 54 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTT--CEEECCCS
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCC--CEEEECCC
Confidence 3567899999999999999999999999999 99998754
No 73
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=64.20 E-value=14 Score=27.37 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=45.1
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|+....+++|+++- .+-.-...|...|.+.| ++|..+.+ . .+.++.+ +..+||+||.
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~~--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~ 57 (137)
T 3hdg_A 1 MSLREVALKILIVE----DDTDAREWLSTIISNHF--PEVWSAGD---------G-------EEGERLF-GLHAPDVIIT 57 (137)
T ss_dssp ------CCCEEEEC----SCHHHHHHHHHHHHTTC--SCEEEESS---------H-------HHHHHHH-HHHCCSEEEE
T ss_pred CCccccccEEEEEe----CCHHHHHHHHHHHHhcC--cEEEEECC---------H-------HHHHHHH-hccCCCEEEE
Confidence 67777778898886 45566677888888888 88776543 1 1112111 1237999999
Q ss_pred cCcch--hHHHHHHH-----cCCCeEEEecc
Q 039208 81 DFFHK--VALQVSCS-----LNIPTYLFYAS 104 (331)
Q Consensus 81 D~~~~--~~~~vA~~-----~giP~v~~~~~ 104 (331)
|.... -+..+.++ .++|.+.++..
T Consensus 58 d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 58 DIRMPKLGGLEMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp CSSCSSSCHHHHHHHHHHTTCCCEEEECCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCCCcEEEEecC
Confidence 98654 23333332 24666655443
No 74
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=64.04 E-value=30 Score=29.62 Aligned_cols=91 Identities=7% Similarity=0.003 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCCH-HHHHHHHHHHHhcCCceEEEEEeCCCCCCcch---HHHhhhHHHHHHHHHhhcCCCccEEEEcCc
Q 039208 8 IRLFFNPSPGSSHL-LSMDELGKLILTHYPYFSVTIIISTFPTLRGQ---LALLNSPNLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 8 ~~i~~~p~p~~gH~-~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p---~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
|||+++..-+.-++ .-+...++.++.-| .+|++++.++-..... -.....+.+.+.++++ ...++|+||.-.+
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~p~--~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l-~~~g~d~iviaCn 78 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAAPG--TEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAG-REQGVDGHVIASF 78 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCCTT--EEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHH-HHHTCSEEEEC-C
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcCCC--CEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHH-HHCCCCEEEEeCC
Confidence 67777766565555 56677788777667 9999888653221110 1122233333333332 2347999998876
Q ss_pred chhHHH-HHHHcCCCeEEE
Q 039208 84 HKVALQ-VSCSLNIPTYLF 101 (331)
Q Consensus 84 ~~~~~~-vA~~~giP~v~~ 101 (331)
...+.. +-+.+++|.+..
T Consensus 79 t~~~l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 79 GDPGLLAARELAQGPVIGI 97 (245)
T ss_dssp CCTTHHHHHHHCSSCEEEH
T ss_pred ChhHHHHHHHHcCCCEECc
Confidence 553344 444579998754
No 75
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=63.83 E-value=4.9 Score=36.16 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=33.0
Q ss_pred CcccccccCH---HHhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccceee
Q 039208 239 GLPVKSWAPQ---VDVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTV 292 (331)
Q Consensus 239 ~~vv~~W~PQ---~~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l 292 (331)
++.+.++.+. .++++..++. |+++|+|+|+.+..+++.. +++. |.|+.+
T Consensus 256 ~v~~~g~~g~~~~~~~~~~ad~~v~~S~g~~lEA~a~G~PvI~~~~~~~~~~----~~~~-g~g~lv 317 (376)
T 1v4v_A 256 NFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPE----GLKA-GILKLA 317 (376)
T ss_dssp TEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHH----HHHH-TSEEEC
T ss_pred CEEEECCCCHHHHHHHHHhCcEEEECCcCHHHHHHHcCCCEEeccCCCcchh----hhcC-CceEEC
Confidence 4555444444 3566666554 9999999999887666655 3453 888877
No 76
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=63.68 E-value=5.4 Score=39.36 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.1
Q ss_pred ccccccCHHHhh---cCcccc--------------chhcCCcEeeccc
Q 039208 241 PVKSWAPQVDVL---SHDSVV--------------AVRTGVPMVAWPS 271 (331)
Q Consensus 241 vv~~W~PQ~~vL---~H~~v~--------------al~~GVP~l~~P~ 271 (331)
++.+..|..+.| +..++. ||++|||+|+.+-
T Consensus 502 ~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G 549 (631)
T 3q3e_A 502 TAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTG 549 (631)
T ss_dssp EEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECC
T ss_pred EEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccC
Confidence 445788877655 555555 9999999999873
No 77
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=62.47 E-value=40 Score=26.56 Aligned_cols=78 Identities=5% Similarity=0.048 Sum_probs=47.8
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
+.+++|+++- .|-.-...|...|.+.| ++|..+.+. .+.++.+ +..+||+||.|...
T Consensus 5 m~~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~~----------------~~al~~~-~~~~~dlvl~D~~l 61 (184)
T 3rqi_A 5 MSDKNFLVID----DNEVFAGTLARGLERRG--YAVRQAHNK----------------DEALKLA-GAEKFEFITVXLHL 61 (184)
T ss_dssp --CCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEECSH----------------HHHHHHH-TTSCCSEEEECSEE
T ss_pred CCCCeEEEEc----CCHHHHHHHHHHHHHCC--CEEEEeCCH----------------HHHHHHH-hhCCCCEEEEeccC
Confidence 3456787774 46666677888888899 988654431 2233322 34579999999865
Q ss_pred h--hHHHHHHH-----cCCCeEEEeccc
Q 039208 85 K--VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 85 ~--~~~~vA~~-----~giP~v~~~~~~ 105 (331)
+ -+..+.++ .++|.+.++...
T Consensus 62 p~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 62 GNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp TTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4 23333332 258877776544
No 78
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=62.29 E-value=14 Score=32.68 Aligned_cols=42 Identities=7% Similarity=-0.006 Sum_probs=36.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
+||+++-..+.|++.-..++.+.|.++-|+.+|++++.+...
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~ 42 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFA 42 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGT
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhh
Confidence 479999999999999999999999998655999999986443
No 79
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=61.06 E-value=43 Score=24.08 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=45.4
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...|.+.|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|....
T Consensus 3 ~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlii~D~~l~~ 59 (127)
T 3i42_A 3 LQQALIVE----DYQAAAETFKELLEMLG--FQADYVMS---------G-------TDALHAM-STRGYDAVFIDLNLPD 59 (127)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTT--EEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESBCSS
T ss_pred cceEEEEc----CCHHHHHHHHHHHHHcC--CCEEEECC---------H-------HHHHHHH-HhcCCCEEEEeCCCCC
Confidence 45777764 45566677888898999 98876543 1 1222222 234799999997653
Q ss_pred -hHHHHHHH-------cCCCeEEEecc
Q 039208 86 -VALQVSCS-------LNIPTYLFYAS 104 (331)
Q Consensus 86 -~~~~vA~~-------~giP~v~~~~~ 104 (331)
-+..+.++ .++|.+.++..
T Consensus 60 ~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 60 TSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred CCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 23333332 24677766543
No 80
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=60.84 E-value=41 Score=24.76 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc-----CC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK-----TS 73 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~-----~~ 73 (331)
|+-+.++++|+++- .+-.-...+.+.|.+.| + +|..+.+ . .+.++.+.+ ..
T Consensus 1 M~~m~~~~~ILivd----d~~~~~~~l~~~L~~~g--~~~~v~~~~~---------~-------~~a~~~l~~~~~~~~~ 58 (143)
T 2qvg_A 1 MSLAADKVDILYLE----DDEVDIQSVERVFHKIS--SLIKIEIAKS---------G-------NQALDMLYGRNKENKI 58 (143)
T ss_dssp ------CCSEEEEC----CCHHHHHHHHHHHHHHC--TTCCEEEESS---------H-------HHHHHHHHTCTTCCCC
T ss_pred CCcccCCCeEEEEe----CCHHHHHHHHHHHHHhC--CCceEEEECC---------H-------HHHHHHHHhcccccCC
Confidence 55555667788775 45556667788888888 6 6665443 1 222222211 25
Q ss_pred CccEEEEcCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 74 NLKTLIIDFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 74 ~~d~vI~D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
+||+||.|.... -+..+.++ -++|.+.++...
T Consensus 59 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 59 HPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 799999997654 34444443 256777766543
No 81
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=60.42 E-value=9.5 Score=35.21 Aligned_cols=86 Identities=13% Similarity=0.203 Sum_probs=49.2
Q ss_pred CcccccccCHH---HhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh--hh-------H
Q 039208 239 GLPVKSWAPQV---DVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA--ER-------R 296 (331)
Q Consensus 239 ~~vv~~W~PQ~---~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~--~~-------~ 296 (331)
++.+.++.++. .+++++++. |.++|+|+|+.|-.++++. +++. |.|+.+. .+ +
T Consensus 283 ~v~l~~~l~~~~~~~l~~~ad~vv~~SGg~~~EA~a~g~PvV~~~~~~~~~e----~v~~-g~~~lv~~d~~~l~~ai~~ 357 (403)
T 3ot5_A 283 RIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPE----GIEA-GTLKLIGTNKENLIKEALD 357 (403)
T ss_dssp TEEEECCCCHHHHHHHHHHEEEEEECCHHHHHHGGGTTCCEEECCSSCSCHH----HHHH-TSEEECCSCHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHhcCEEEECCccHHHHHHHhCCCEEEecCCCcchh----heeC-CcEEEcCCCHHHHHHHHHH
Confidence 45555776643 445555554 9999999999976666654 3454 8887664 22 2
Q ss_pred HHHhHHHHHHHHH--HHHhcCCChHHHHHHHHHHH
Q 039208 297 VIEGIRAPKEQAV--GALSEGGRSLAVVAELAESF 329 (331)
Q Consensus 297 lm~~a~~l~~~~~--~a~~~ggss~~~l~~~v~~~ 329 (331)
++++-...+++.+ ....+|+++.+-++.+.+.+
T Consensus 358 ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l 392 (403)
T 3ot5_A 358 LLDNKESHDKMAQAANPYGDGFAANRILAAIKSHF 392 (403)
T ss_dssp HHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHhhcCcccCCcHHHHHHHHHHHHh
Confidence 3321111111111 22356788877776665544
No 82
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=59.96 E-value=14 Score=33.56 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=26.4
Q ss_pred cEEEEEc--CCC-CCCHHHHHHHHHHHHhcCCceEEEEEeCCC
Q 039208 8 IRLFFNP--SPG-SSHLLSMDELGKLILTHYPYFSVTIIISTF 47 (331)
Q Consensus 8 ~~i~~~p--~p~-~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~ 47 (331)
|||+++. +|. -|.-.-...|+++|+++ |+|++++...
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~---~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA---HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT---SEEEEEEESC
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc---CCeEEEeecC
Confidence 5777764 232 35567788999999886 8999987543
No 83
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=58.89 E-value=50 Score=24.13 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=45.8
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...+...|.+.| ++|..+.+ . .+.++.+ +..++|+||.|....
T Consensus 3 ~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~d~~~~~ 59 (140)
T 2qr3_A 3 LGTIIIVD----DNKGVLTAVQLLLKNHF--SKVITLSS---------P-------VSLSTVL-REENPEVVLLDMNFTS 59 (140)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHTTTS--SEEEEECC---------H-------HHHHHHH-HHSCEEEEEEETTTTC
T ss_pred CceEEEEe----CCHHHHHHHHHHHHhCC--cEEEEeCC---------H-------HHHHHHH-HcCCCCEEEEeCCcCC
Confidence 46777765 45556667888888889 98875433 1 1222222 224799999997543
Q ss_pred ------hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 ------VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 ------~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ -++|.+.++...
T Consensus 60 ~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 60 GINNGNEGLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp -----CCHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred CCCCCccHHHHHHHHHhhCcCCCEEEEECCC
Confidence 23333332 268888876544
No 84
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=58.55 E-value=16 Score=32.15 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=33.8
Q ss_pred CCcccccccCHH---------HhhcCccc----------c---------chhcCCcEeecccccchhhhHHHHHh--hhc
Q 039208 238 WGLPVKSWAPQV---------DVLSHDSV----------V---------AVRTGVPMVAWPSNGDQMVNMAFLVE--KIR 287 (331)
Q Consensus 238 ~~~vv~~W~PQ~---------~vL~H~~v----------~---------al~~GVP~l~~P~~~DQ~~na~~v~~--~lG 287 (331)
.++...+|+|+. +++-+|+. . |+++|+|+|+.... .+...+.+ . +
T Consensus 212 ~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~----~~~e~~~~~~~-~ 286 (342)
T 2iuy_A 212 STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNG----CLAEIVPSVGE-V 286 (342)
T ss_dssp TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTT----THHHHGGGGEE-E
T ss_pred CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCC----ChHHHhcccCC-C
Confidence 566666888876 34445555 2 99999999998763 45566655 3 4
Q ss_pred cceeeh
Q 039208 288 DPLTVA 293 (331)
Q Consensus 288 vG~~l~ 293 (331)
.|+.++
T Consensus 287 ~g~~~~ 292 (342)
T 2iuy_A 287 VGYGTD 292 (342)
T ss_dssp CCSSSC
T ss_pred ceEEcC
Confidence 566554
No 85
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=57.95 E-value=24 Score=32.16 Aligned_cols=83 Identities=12% Similarity=-0.149 Sum_probs=48.6
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh-----h--hHHHHHHHHHhhcCCCccE
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL-----N--SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~-----~--~~~l~~~l~~l~~~~~~d~ 77 (331)
+.+.+|+++..... -..+++++.+.| ++|+++..... + .|.... . ..... .+.++++..++|.
T Consensus 5 ~~~~~ilI~g~g~~-----~~~~~~a~~~~G--~~~v~v~~~~~-~-~~~~~~ad~~~~~~~~d~~-~l~~~~~~~~~d~ 74 (403)
T 4dim_A 5 YDNKRLLILGAGRG-----QLGLYKAAKELG--IHTIAGTMPNA-H-KPCLNLADEISYMDISNPD-EVEQKVKDLNLDG 74 (403)
T ss_dssp -CCCEEEEECCCGG-----GHHHHHHHHHHT--CEEEEEECSSC-C-HHHHHHCSEEEECCTTCHH-HHHHHTTTSCCSE
T ss_pred cCCCEEEEECCcHh-----HHHHHHHHHHCC--CEEEEEcCCCC-C-CcchhhCCeEEEecCCCHH-HHHHHHHHcCCCE
Confidence 34568888876543 356899999999 99998864321 1 121110 0 01122 3333445668999
Q ss_pred EEEc---CcchhHHHHHHHcCCC
Q 039208 78 LIID---FFHKVALQVSCSLNIP 97 (331)
Q Consensus 78 vI~D---~~~~~~~~vA~~~giP 97 (331)
|+.. ........+++++|+|
T Consensus 75 v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 75 AATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp EECCSCSTTHHHHHHHHHHHTCS
T ss_pred EEeCCcchhHHHHHHHHHHcCcC
Confidence 9963 3333455677888986
No 86
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=57.39 E-value=39 Score=29.00 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=35.9
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..+.++++.+.++-.|-....-++..|..+| ++|.++...
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G--~~Vi~LG~~ 160 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANG--YNVVDLGRD 160 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTT--CEEEEEEEE
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCC--CEEEECCCC
Confidence 3457899999999999999999999999999 999988764
No 87
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=57.31 E-value=17 Score=32.89 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
+++.-.|+.|-..-.+.+|..++.+| ..|.|++.+..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlEms 85 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLEMS 85 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCCC
Confidence 56677899999999999999999999 99999987644
No 88
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=57.31 E-value=16 Score=33.46 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC----cc---------h-------------HHHhhhHH
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL----RG---------Q-------------LALLNSPN 61 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~----~~---------p-------------~~~~~~~~ 61 (331)
.+++++ ++++--+.=|.+|.++|.++ ++..++.+....+ .. | ....+...
T Consensus 10 ~~~~~v-~GtRpe~~k~~p~~~~l~~~---~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 85 (385)
T 4hwg_A 10 LKVMTI-VGTRPELIKLCCVISEFDKH---TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIEK 85 (385)
T ss_dssp CEEEEE-ECSHHHHHHHHHHHHHHHHH---SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHHH
T ss_pred hheeEE-EEcCHhHHHHHHHHHHHHhc---CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHHH
Confidence 445544 47888888899999999765 5555554431111 00 1 11112223
Q ss_pred HHHHHHHhhcCCCccEEEE--cCcchhHHHHHHHcCCCeEEEe
Q 039208 62 LHKTLIIQSKTSNLKTLII--DFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 62 l~~~l~~l~~~~~~d~vI~--D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+.+.++ ..+||+||. |....|++..|.++|||.+.+.
T Consensus 86 l~~~l~----~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~e 124 (385)
T 4hwg_A 86 VDEVLE----KEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHH----HHCCSEEEEESCSGGGGGHHHHHHTTCCEEEES
T ss_pred HHHHHH----hcCCcEEEEECCchHHHHHHHHHHhCCCEEEEe
Confidence 333343 448998875 4445566778888999976554
No 89
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=57.05 E-value=56 Score=24.08 Aligned_cols=77 Identities=9% Similarity=0.118 Sum_probs=46.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+++|+++- .|-.-...|...|.+.| ++|..+.+ . .+.++.+.+..+||+||.|...+
T Consensus 4 ~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l~~~~~~dlvi~D~~l~ 61 (140)
T 3h5i_A 4 KDKKILIVE----DSKFQAKTIANILNKYG--YTVEIALT---------G-------EAAVEKVSGGWYPDLILMDIELG 61 (140)
T ss_dssp --CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHHHTTCCCSEEEEESSCS
T ss_pred CCcEEEEEe----CCHHHHHHHHHHHHHcC--CEEEEecC---------h-------HHHHHHHhcCCCCCEEEEeccCC
Confidence 346787775 46666778888999999 99875433 1 22232222235899999997652
Q ss_pred ---hHHHHHHH----cCCCeEEEecc
Q 039208 86 ---VALQVSCS----LNIPTYLFYAS 104 (331)
Q Consensus 86 ---~~~~vA~~----~giP~v~~~~~ 104 (331)
-+..+.++ -++|.+.++..
T Consensus 62 ~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 62 EGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp SSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred CCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 23333332 46887776543
No 90
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=57.02 E-value=55 Score=24.03 Aligned_cols=75 Identities=7% Similarity=0.115 Sum_probs=46.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...+...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|. ..
T Consensus 4 ~~~iLivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~d~-~~~ 59 (142)
T 2qxy_A 4 TPTVMVVD----ESRITFLAVKNALEKDG--FNVIWAKN---------E-------QEAFTFL-RREKIDLVFVDV-FEG 59 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHGGGT--CEEEEESS---------H-------HHHHHHH-TTSCCSEEEEEC-TTT
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhCC--CEEEEECC---------H-------HHHHHHH-hccCCCEEEEeC-CCC
Confidence 45677774 45566677888888899 99875433 1 2233322 345799999998 54
Q ss_pred -hHHHHHHH----c-CCCeEEEeccc
Q 039208 86 -VALQVSCS----L-NIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~----~-giP~v~~~~~~ 105 (331)
-+..+.++ . ++|.+.++...
T Consensus 60 ~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 60 EESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 23333332 2 58888776543
No 91
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=56.80 E-value=6.2 Score=35.25 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCcccccccCHH---HhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 238 WGLPVKSWAPQV---DVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 238 ~~~vv~~W~PQ~---~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
.++.+.+|.++. +++++.++. |+++|+|+|+....+.. ..+.+. |.|+.+.
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~ad~~v~~sg~~~lEA~a~G~Pvi~~~~~~~~----~e~v~~-g~g~~v~ 326 (375)
T 3beo_A 263 GRIHLIEPLDVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTTER----PEGIEA-GTLKLAG 326 (375)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSEEEECCHHHHHHHHHHTCCEEECSSCCSC----HHHHHT-TSEEECC
T ss_pred CCEEEeCCCCHHHHHHHHHhCcEEEECCCChHHHHHhcCCCEEEecCCCCC----ceeecC-CceEEcC
Confidence 355554666654 455666655 99999999998543332 234453 7888763
No 92
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=56.50 E-value=5.6 Score=35.73 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=31.9
Q ss_pred CcccccccCH---HHhhcCcccc----------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 239 GLPVKSWAPQ---VDVLSHDSVV----------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 239 ~~vv~~W~PQ---~~vL~H~~v~----------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
++.+.+|.+. .++++.+++. |+++|+|+|+.|..+++ ..+++. |.|+.+.
T Consensus 264 ~v~~~g~~~~~~~~~~~~~ad~~v~~Sg~~~lEA~a~G~PvI~~~~~~~~----~e~v~~-g~g~lv~ 326 (384)
T 1vgv_A 264 NVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTER----PEAVTA-GTVRLVG 326 (384)
T ss_dssp TEEEECCCCHHHHHHHHHHCSEEEESSSTGGGTGGGGTCCEEEESSCCSC----HHHHHH-TSEEEEC
T ss_pred CEEEeCCCCHHHHHHHHHhCcEEEECCcchHHHHHHcCCCEEEccCCCCc----chhhhC-CceEEeC
Confidence 4555455554 3445554443 99999999999875443 334554 8888774
No 93
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=56.32 E-value=16 Score=32.33 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=39.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh-h----------hHHHH---hHHHHHHHHHHHHhcC--CChHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA-E----------RRVIE---GIRAPKEQAVGALSEG--GRSLAVV 322 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~-~----------~~lm~---~a~~l~~~~~~a~~~g--gss~~~l 322 (331)
|+++|+|+|+.+. ..+...+.+. +.|..+. . +++++ ..+++++.+++...+- -+..+.+
T Consensus 290 a~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T 2iw1_A 290 AITAGLPVLTTAV----CGYAHYIADA-NCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKA 364 (374)
T ss_dssp HHHHTCCEEEETT----STTTHHHHHH-TCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHHCCCCEEEecC----CCchhhhccC-CceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999765 3566777774 8888775 2 23333 3455666666555443 3333444
Q ss_pred HHHHH
Q 039208 323 AELAE 327 (331)
Q Consensus 323 ~~~v~ 327 (331)
.++++
T Consensus 365 ~~~l~ 369 (374)
T 2iw1_A 365 ADIIT 369 (374)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 94
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=56.07 E-value=35 Score=28.12 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=34.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
.+.++++.+.++-.|-....-++..|..+| ++|.++..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G--~~v~~LG~ 124 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGG--FTVYNLGV 124 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTT--CEEEECCS
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCC--CEEEECCC
Confidence 356899999999999999999999999999 99998765
No 95
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=54.94 E-value=60 Score=23.84 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=46.5
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc-CCCccEEEEcCcch
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK-TSNLKTLIIDFFHK 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~-~~~~d~vI~D~~~~ 85 (331)
+++|+++- .+-.-...+.+.|.+.| ++|..+.+ . .+.++.+.. ..+||+||.|....
T Consensus 3 ~~~ilivd----d~~~~~~~l~~~l~~~g--~~v~~~~~---------~-------~~a~~~~~~~~~~~dlvi~d~~l~ 60 (143)
T 3jte_A 3 LAKILVID----DESTILQNIKFLLEIDG--NEVLTASS---------S-------TEGLRIFTENCNSIDVVITDMKMP 60 (143)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHHHHTTTTCCEEEEESCCS
T ss_pred CCEEEEEc----CCHHHHHHHHHHHHhCC--ceEEEeCC---------H-------HHHHHHHHhCCCCCCEEEEeCCCC
Confidence 46777764 45566677888888899 98875543 1 122222211 35899999997654
Q ss_pred --hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 --VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 --~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ -++|.+.++...
T Consensus 61 ~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 61 KLSGMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp SSCHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred CCcHHHHHHHHHHhCCCCeEEEEECCC
Confidence 23333332 257877776543
No 96
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=54.19 E-value=66 Score=24.09 Aligned_cols=76 Identities=13% Similarity=0.057 Sum_probs=46.2
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...+...|.+.| ++|+.+.+ ..+.++.+ +..+||+||.|....
T Consensus 3 ~~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~----------------~~~a~~~l-~~~~~dliild~~l~~ 59 (155)
T 1qkk_A 3 APSVFLID----DDRDLRKAMQQTLELAG--FTVSSFAS----------------ATEALAGL-SADFAGIVISDIRMPG 59 (155)
T ss_dssp -CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESC----------------HHHHHHTC-CTTCCSEEEEESCCSS
T ss_pred CCEEEEEe----CCHHHHHHHHHHHHHcC--cEEEEECC----------------HHHHHHHH-HhCCCCEEEEeCCCCC
Confidence 45676664 44555667888888889 98875433 12333332 345799999997553
Q ss_pred -hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 -VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ -++|.+.++...
T Consensus 60 ~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (155)
T 1qkk_A 60 MDGLALFRKILALDPDLPMILVTGHG 85 (155)
T ss_dssp SCHHHHHHHHHHHCTTSCEEEEECGG
T ss_pred CCHHHHHHHHHhhCCCCCEEEEECCC
Confidence 23333332 268888876544
No 97
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=53.93 E-value=54 Score=27.53 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=56.3
Q ss_pred ccEEEEEcCC-CCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC---cc--------hHHH-hhhHHHHHHHHHhhcCC
Q 039208 7 IIRLFFNPSP-GSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL---RG--------QLAL-LNSPNLHKTLIIQSKTS 73 (331)
Q Consensus 7 ~~~i~~~p~p-~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~---~~--------p~~~-~~~~~l~~~l~~l~~~~ 73 (331)
+..+.++.-+ +.|=..-.++++..+..+| .+|.++.+..... .. +... .....+.+.+.+.....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 3456666655 8999999999999999999 9998886543111 10 0000 01112222333222345
Q ss_pred CccEEEEcCcchh-------HHHHHHHcCCCeEEEec
Q 039208 74 NLKTLIIDFFHKV-------ALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 74 ~~d~vI~D~~~~~-------~~~vA~~~giP~v~~~~ 103 (331)
++|+||.|..... ...++. .|+|.+.+.-
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi~Vil~Gl 124 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAE-NGFVVIISGL 124 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECC
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHh-CCCeEEEEec
Confidence 7999999964431 223344 4999888764
No 98
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=53.64 E-value=13 Score=33.60 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=38.8
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.+.. .....+.+. +.|+.++. +++++ ..+++++.+++.+.+.=|..+..+++
T Consensus 304 Ama~G~PvI~~~~~----~~~e~v~~~-~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 378 (394)
T 2jjm_A 304 AMACGVPCIGTRVG----GIPEVIQHG-DTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQY 378 (394)
T ss_dssp HHHTTCCEEEECCT----TSTTTCCBT-TTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhcCCCEEEecCC----ChHHHhhcC-CceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998753 334444442 56776653 23333 34556666666554555555555555
Q ss_pred HHHH
Q 039208 326 AESF 329 (331)
Q Consensus 326 v~~~ 329 (331)
.+.+
T Consensus 379 ~~~~ 382 (394)
T 2jjm_A 379 ETIY 382 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 99
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=52.01 E-value=16 Score=32.53 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=39.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeehh----------hHHHH---hHHHHHHHHHHHHhcCCChHHHHHHH
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVAE----------RRVIE---GIRAPKEQAVGALSEGGRSLAVVAEL 325 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~~----------~~lm~---~a~~l~~~~~~a~~~ggss~~~l~~~ 325 (331)
|+++|+|+|+.+.. .....+.+ |.|+.+.. +++++ ..+++++.+++.+.+.=|..+..+++
T Consensus 299 a~a~G~PvI~~~~~----~~~e~i~~--~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 372 (394)
T 3okp_A 299 AQACGVPVIAGTSG----GAPETVTP--ATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERL 372 (394)
T ss_dssp HHHTTCCEEECSST----TGGGGCCT--TTEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHcCCCEEEeCCC----ChHHHHhc--CCceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999997653 33334433 46666653 23332 34556666666555545666666666
Q ss_pred HHHHh
Q 039208 326 AESFR 330 (331)
Q Consensus 326 v~~~~ 330 (331)
.+.++
T Consensus 373 ~~~~~ 377 (394)
T 3okp_A 373 TNILQ 377 (394)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 100
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=51.62 E-value=63 Score=23.05 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=44.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--h
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--V 86 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~ 86 (331)
+|+++- .|-.-...+...|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|...+ -
T Consensus 4 ~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlii~D~~~p~~~ 60 (120)
T 3f6p_A 4 KILVVD----DEKPIADILEFNLRKEG--YEVHCAHD---------G-------NEAVEMV-EELQPDLILLDIMLPNKD 60 (120)
T ss_dssp EEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HTTCCSEEEEETTSTTTH
T ss_pred eEEEEE----CCHHHHHHHHHHHHhCC--EEEEEeCC---------H-------HHHHHHH-hhCCCCEEEEeCCCCCCC
Confidence 566654 34455566778888889 99875432 1 2222222 345899999998764 3
Q ss_pred HHHHHH----HcCCCeEEEeccc
Q 039208 87 ALQVSC----SLNIPTYLFYASS 105 (331)
Q Consensus 87 ~~~vA~----~~giP~v~~~~~~ 105 (331)
+..+.+ ..++|.+.++...
T Consensus 61 g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 61 GVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHHHHHHHhcCCCCEEEEECCC
Confidence 444443 3468887776544
No 101
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=50.99 E-value=30 Score=32.85 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--hHHHhh--------hHHHHHHHHHhhcCCCccE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--QLALLN--------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p~~~~~--------~~~l~~~l~~l~~~~~~d~ 77 (331)
.|++++.-+ .+.. .+++.|.+-| .+|+.+.+....... .+...+ ...+.++. ++++..+||+
T Consensus 333 Krv~i~~~~--~~~~---~l~~~L~ElG--mevv~~gt~~~~~~d~~~~~~~l~~~~~i~~d~d~~el~-~~i~~~~pDL 404 (483)
T 3pdi_A 333 KRVLLYTGG--VKSW---SVVSALQDLG--MKVVATGTKKSTEEDKARIRELMGDDVKMLDEGNARVLL-KTVDEYQADI 404 (483)
T ss_dssp CEEEEECSS--SCHH---HHHHHHHHHT--CEEEEECBSSSCHHHHHHHHHHSCSSCCBCCSCSHHHHH-HHHHHTTCSE
T ss_pred CEEEEECCC--chHH---HHHHHHHHCC--CEEEEEecCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHH-HHHHhcCCCE
Confidence 467776544 4544 5666788899 999887654322100 000000 01122222 2223458999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+|.... ...+|+++|||++.+.
T Consensus 405 ~ig~~~---~~~~a~k~gIP~~~~~ 426 (483)
T 3pdi_A 405 LIAGGR---NMYTALKGRVPFLDIN 426 (483)
T ss_dssp EECCGG---GHHHHHHTTCCBCCCC
T ss_pred EEECCc---hhHHHHHcCCCEEEec
Confidence 998654 6688999999987553
No 102
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=50.77 E-value=66 Score=23.08 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=46.8
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCC-CccEEEEcCc
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTS-NLKTLIIDFF 83 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~-~~d~vI~D~~ 83 (331)
.++++|+++- .+-.-...+...|...| ++|+.+.+ . .+.++.+ +.. +||+||.|..
T Consensus 3 m~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~l-~~~~~~dlvi~d~~ 59 (132)
T 2rdm_A 3 LEAVTILLAD----DEAILLLDFESTLTDAG--FLVTAVSS---------G-------AKAIEML-KSGAAIDGVVTDIR 59 (132)
T ss_dssp CSSCEEEEEC----SSHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HTTCCCCEEEEESC
T ss_pred CCCceEEEEc----CcHHHHHHHHHHHHHcC--CEEEEECC---------H-------HHHHHHH-HcCCCCCEEEEeee
Confidence 3456788774 45555667888888889 98875432 1 2222222 233 7999999975
Q ss_pred ch---hHHHHHHHc-----CCCeEEEeccc
Q 039208 84 HK---VALQVSCSL-----NIPTYLFYASS 105 (331)
Q Consensus 84 ~~---~~~~vA~~~-----giP~v~~~~~~ 105 (331)
.. -+..+.+++ ++|.+.++...
T Consensus 60 l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 60 FCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp CSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 43 233333332 58888776543
No 103
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=49.57 E-value=77 Score=26.28 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=47.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+++|+++- .|-.-...|...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|...+
T Consensus 22 ~~~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlvllD~~lp 78 (250)
T 3r0j_A 22 PEARVLVVD----DEANIVELLSVSLKFQG--FEVYTATN---------G-------AQALDRA-RETRPDAVILDVXMP 78 (250)
T ss_dssp SSCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHHCCSEEEEESCCS
T ss_pred CCceEEEEE----CCHHHHHHHHHHHHHCC--CEEEEECC---------H-------HHHHHHH-HhCCCCEEEEeCCCC
Confidence 356788775 46666677888888899 99875432 1 1122111 123799999998654
Q ss_pred --hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 --VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 --~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 79 ~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 79 GMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp SSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred CCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 24444433 258888776654
No 104
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=48.97 E-value=41 Score=32.32 Aligned_cols=83 Identities=12% Similarity=-0.023 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----hHHHh--------h--hHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-----QLALL--------N--SPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-----p~~~~--------~--~~~l~~~l~~l~~~ 72 (331)
.+++++. .-.-..+|++.|.+-| .+|+.+.+......- ..+.. . ...+.++ +++++.
T Consensus 365 KrvaI~g-----d~~~~~~la~fL~elG--m~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~D~~~l-~~~i~~ 436 (523)
T 3u7q_B 365 KRFALWG-----DPDFVMGLVKFLLELG--CEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHL-RSLVFT 436 (523)
T ss_dssp CEEEEEC-----SHHHHHHHHHHHHHTT--CEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESCCHHHH-HHHHHH
T ss_pred CEEEEEC-----CchHHHHHHHHHHHcC--CEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEECCCHHHH-HHHHHh
Confidence 4677762 2233467888888999 999888764332110 01110 0 0112222 222344
Q ss_pred CCccEEEEcCcchhHHHHHHHc-------CCCeEEE
Q 039208 73 SNLKTLIIDFFHKVALQVSCSL-------NIPTYLF 101 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~-------giP~v~~ 101 (331)
.+||+||.... +..+|+++ |||++.+
T Consensus 437 ~~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 437 DKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp TCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred cCCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 58999999875 34455555 9998865
No 105
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=47.92 E-value=20 Score=32.56 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.1
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+-|-.++.......+.+. |.++.+.
T Consensus 298 AmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~~ 331 (374)
T 2xci_A 298 PTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVK 331 (374)
T ss_dssp HHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEECC
T ss_pred HHHhCCCEEECCCccChHHHHHHHHHC-CCEEEeC
Confidence 999999999877776666666665554 8888774
No 106
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=47.37 E-value=26 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=33.7
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
+.++++.+.++-.|-.-..=++..|..+| ++|.++..
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G--~~Vi~lG~ 39 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAG--FNVVNIGV 39 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTT--CEEEEEEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCC--CEEEECCC
Confidence 46899999999999999999999999999 99998865
No 107
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=46.46 E-value=93 Score=26.40 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=48.6
Q ss_pred CCCCCcccEEEEEcC----CCCCC---HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCC
Q 039208 1 MSESWIIIRLFFNPS----PGSSH---LLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTS 73 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~----p~~gH---~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~ 73 (331)
|+.+.+...|.++.. +..++ ..-+..+.+++.++| .++.+..+.. ......+.++.+ ...
T Consensus 1 ~s~~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g--~~~~~~~~~~----------~~~~~~~~~~~l-~~~ 67 (295)
T 3hcw_A 1 MSLTNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHG--YGTQTTVSNN----------MNDLMDEVYKMI-KQR 67 (295)
T ss_dssp ---CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTT--CEEEECCCCS----------HHHHHHHHHHHH-HTT
T ss_pred CCCCCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCC--CEEEEEcCCC----------ChHHHHHHHHHH-HhC
Confidence 556666667776642 22222 223345667777889 9987654321 011112233333 345
Q ss_pred CccEEEEcCcch--hHHHHHHHcCCCeEEEec
Q 039208 74 NLKTLIIDFFHK--VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 74 ~~d~vI~D~~~~--~~~~vA~~~giP~v~~~~ 103 (331)
++|.||.-.... .....+.+.|+|.|.+..
T Consensus 68 ~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 68 MVDAFILLYSKENDPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp CCSEEEESCCCTTCHHHHHHHHTTCCEEEESC
T ss_pred CcCEEEEcCcccChHHHHHHHhCCCCEEEECC
Confidence 899988754322 334456678999998754
No 108
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.30 E-value=27 Score=29.64 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
...+++|++.--||.|=..-++.+|..|+++| ++|.++..+
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D 43 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVE 43 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 34567899999999999999999999999999 999887764
No 109
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=46.29 E-value=1.1e+02 Score=24.25 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+.+|+++- .|-.-...+...|...| ++|..+.+ ..+.++.+ +..+||+||.|...+
T Consensus 4 ~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~----------------~~~al~~~-~~~~~dlvl~D~~lp~ 60 (208)
T 1yio_A 4 KPTVFVVD----DDMSVREGLRNLLRSAG--FEVETFDC----------------ASTFLEHR-RPEQHGCLVLDMRMPG 60 (208)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS----------------HHHHHHHC-CTTSCEEEEEESCCSS
T ss_pred CCEEEEEc----CCHHHHHHHHHHHHhCC--ceEEEcCC----------------HHHHHHhh-hccCCCEEEEeCCCCC
Confidence 34677664 56666677888888889 98875432 12233322 345799999998654
Q ss_pred -hHHHHHHH-----cCCCeEEEec
Q 039208 86 -VALQVSCS-----LNIPTYLFYA 103 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~ 103 (331)
-+..+.++ -++|.+.++.
T Consensus 61 ~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 61 MSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp SCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeC
Confidence 34444433 2577777653
No 110
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=44.27 E-value=95 Score=28.12 Aligned_cols=73 Identities=5% Similarity=-0.088 Sum_probs=49.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHH--------------hhhHHHHHHHHHhhcCCCc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLAL--------------LNSPNLHKTLIIQSKTSNL 75 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~--------------~~~~~l~~~l~~l~~~~~~ 75 (331)
+++.--|+.|-..-.++++..++.+| ..|.|++.+...... +.. .....+.+.++.+.+...+
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 55667889999999999999999999 999999987543311 000 0112233344555455679
Q ss_pred cEEEEcCcch
Q 039208 76 KTLIIDFFHK 85 (331)
Q Consensus 76 d~vI~D~~~~ 85 (331)
|+||.|....
T Consensus 154 ~lVVIDsl~~ 163 (366)
T 1xp8_A 154 DVVVVDSVAA 163 (366)
T ss_dssp SEEEEECTTT
T ss_pred CEEEEeChHH
Confidence 9999998654
No 111
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=43.44 E-value=35 Score=27.09 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.4
Q ss_pred Cccc-ccccCHH---HhhcCcccc---------------chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 239 GLPV-KSWAPQV---DVLSHDSVV---------------AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 239 ~~vv-~~W~PQ~---~vL~H~~v~---------------al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
++.. .+|+++. .+++..++. |+++|+|+|+.... .+...+ +. +.|..++
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~-~~-~~g~~~~ 163 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII-TN-ETGILVK 163 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC-CT-TTCEEEC
T ss_pred CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc-CC-CceEEec
Confidence 5666 6899854 455555554 99999999998543 455555 53 6777775
No 112
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=43.37 E-value=99 Score=22.94 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=45.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+++|+++- .+-.-...|...|.+.|+.+.|..+.+ ..+.++.+ +..+||+||.|....
T Consensus 19 ~m~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~----------------~~~al~~l-~~~~~dlii~D~~l~ 77 (150)
T 4e7p_A 19 SHMKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKN----------------GQEAIQLL-EKESVDIAILDVEMP 77 (150)
T ss_dssp -CEEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESS----------------HHHHHHHH-TTSCCSEEEECSSCS
T ss_pred CccEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECC----------------HHHHHHHh-hccCCCEEEEeCCCC
Confidence 456788775 455666777788887763233433322 12333333 345799999997653
Q ss_pred --hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 --VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 --~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 78 ~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 78 VKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp SSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred CCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 33433332 257877776544
No 113
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=43.00 E-value=37 Score=28.35 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.||++--.++.|-+. ...|.+.|.++| ++|.++.++
T Consensus 5 k~IllgvTGaiaa~k-~~~ll~~L~~~g--~eV~vv~T~ 40 (209)
T 3zqu_A 5 ERITLAMTGASGAQY-GLRLLDCLVQEE--REVHFLISK 40 (209)
T ss_dssp SEEEEEECSSSCHHH-HHHHHHHHHHTT--CEEEEEECH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHHHCC--CEEEEEECc
Confidence 578888888877666 889999999999 999999875
No 114
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=43.00 E-value=1e+02 Score=23.11 Aligned_cols=79 Identities=9% Similarity=0.164 Sum_probs=46.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc-CCCccEEEEcCcc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK-TSNLKTLIIDFFH 84 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~-~~~~d~vI~D~~~ 84 (331)
.+++|+++- .|-.-...|.+.|.+.| ++|...... . .+.++.+.+ ..++|+||.|...
T Consensus 35 ~~~~Ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~~--------~-------~~al~~l~~~~~~~dliilD~~l 93 (157)
T 3hzh_A 35 IPFNVLIVD----DSVFTVKQLTQIFTSEG--FNIIDTAAD--------G-------EEAVIKYKNHYPNIDIVTLXITM 93 (157)
T ss_dssp EECEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEEESS--------H-------HHHHHHHHHHGGGCCEEEECSSC
T ss_pred CceEEEEEe----CCHHHHHHHHHHHHhCC--CeEEEEECC--------H-------HHHHHHHHhcCCCCCEEEEeccC
Confidence 345788775 46666777888888899 998623221 1 122222211 1268999999765
Q ss_pred h--hHHHHHHH-----cCCCeEEEeccc
Q 039208 85 K--VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 85 ~--~~~~vA~~-----~giP~v~~~~~~ 105 (331)
. -+..+.++ -++|.+.++...
T Consensus 94 ~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 94 PKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp SSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 3 23333332 268887776543
No 115
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=42.90 E-value=29 Score=27.84 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=44.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------hHHHhhhHHHHHHHHHhhcCCCccEEEEcCc
Q 039208 14 PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG----------QLALLNSPNLHKTLIIQSKTSNLKTLIIDFF 83 (331)
Q Consensus 14 p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~----------p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~ 83 (331)
+-+|.|=..-...||..|+++| ++|.++-........ +++......+.+.++.+ ...+|+||.|.-
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l--~~~yD~viiD~~ 84 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKD--LADYDFAIVDGA 84 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHH--TTTSSEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHh--cCCCCEEEEECC
Confidence 3567888999999999999999 999988654211100 01111124555566655 246999999974
Q ss_pred c
Q 039208 84 H 84 (331)
Q Consensus 84 ~ 84 (331)
.
T Consensus 85 ~ 85 (206)
T 4dzz_A 85 G 85 (206)
T ss_dssp S
T ss_pred C
Confidence 3
No 116
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=42.66 E-value=56 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCccEEEEcCcch------hHHHHHHHcCCCeEEEecc
Q 039208 63 HKTLIIQSKTSNLKTLIIDFFHK------VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~l~~l~~~~~~d~vI~D~~~~------~~~~vA~~~giP~v~~~~~ 104 (331)
..++..+++..+||+|+.-.... .+..+|.++|+|.+...+.
T Consensus 101 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 101 GRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34444444444799999765442 7889999999999987654
No 117
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=42.61 E-value=69 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=29.3
Q ss_pred cEEEEEc--CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNP--SPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p--~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.+++++. .++.|=-.-...||..|++.| .+|.++-.+
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID~D 130 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTN--KRVLLIDCD 130 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTT--CCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCC--CCEEEEecc
Confidence 4544443 467888999999999999999 999988654
No 118
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=42.33 E-value=1.1e+02 Score=28.34 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=33.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTL 50 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~ 50 (331)
+++.-.||.|=..-.+++|...+.+| ..|.|++.+....
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms~~ 238 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKK 238 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSCTT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCCHH
Confidence 66777899999999999999999889 9999998875443
No 119
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=42.27 E-value=84 Score=23.81 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
+.+||+++= -+-.--.-+.+.|.+.| ++++..... -.. .++ .+ +..+||+||.|...+
T Consensus 11 k~~rILiVD----D~~~~r~~l~~~L~~~G--~~~v~~a~~--------g~~---al~-~~----~~~~~DlillD~~MP 68 (134)
T 3to5_A 11 KNMKILIVD----DFSTMRRIVKNLLRDLG--FNNTQEADD--------GLT---ALP-ML----KKGDFDFVVTDWNMP 68 (134)
T ss_dssp TTCCEEEEC----SCHHHHHHHHHHHHHTT--CCCEEEESS--------HHH---HHH-HH----HHHCCSEEEEESCCS
T ss_pred CCCEEEEEe----CCHHHHHHHHHHHHHcC--CcEEEEECC--------HHH---HHH-HH----HhCCCCEEEEcCCCC
Confidence 446788774 33344445667777889 875433321 111 111 12 223899999998776
Q ss_pred --hHHHHHHHc-------CCCeEEEecccH
Q 039208 86 --VALQVSCSL-------NIPTYLFYASSA 106 (331)
Q Consensus 86 --~~~~vA~~~-------giP~v~~~~~~~ 106 (331)
-|..+++++ ++|.+.++....
T Consensus 69 ~mdG~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 69 GMQGIDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp SSCHHHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred CCCHHHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 456665543 588887776543
No 120
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=41.63 E-value=1.2e+02 Score=26.52 Aligned_cols=86 Identities=9% Similarity=0.012 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCC--CHHH-HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC-CCccEEEEcC
Q 039208 7 IIRLFFNPSPGSS--HLLS-MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT-SNLKTLIIDF 82 (331)
Q Consensus 7 ~~~i~~~p~p~~g--H~~p-~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~-~~~d~vI~D~ 82 (331)
+.+|.++.....+ .+.- ...+-+++.++| .++.+..+... ..... +.++.+++. .++|.||.-.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g--~~~~~~~~~~~------~~~~~----~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLG--LDLRILYAERD------PQNTL----QQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHT--CEEEEEECTTC------HHHHH----HHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcC--CeEEEEECCCC------HHHHH----HHHHHHHhcCCCCCEEEEeC
Confidence 4566666543333 1222 234455666789 99988755311 11122 233344333 5899988754
Q ss_pred cch---hHHHHHHHcCCCeEEEecc
Q 039208 83 FHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 83 ~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
... -....+.+.|||.|.+...
T Consensus 71 ~~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 71 EQYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp CSSHHHHHHHHHTTSCCEEEEEESC
T ss_pred chhhHHHHHHHHHhCCCcEEEEcCC
Confidence 222 2234555679999988643
No 121
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=41.44 E-value=99 Score=22.41 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCCC-CcccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceE-EEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccE
Q 039208 1 MSES-WIIIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFS-VTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 1 ~~~~-~~~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~-Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~ 77 (331)
|+-. ..+++|+++- .+-.-...|...|.+ .| ++ |+.+.+ . .+.++.+ +..+||+
T Consensus 1 M~~~~~~~~~iLivd----d~~~~~~~l~~~L~~~~~--~~~v~~~~~---------~-------~~a~~~l-~~~~~dl 57 (143)
T 3cnb_A 1 MSLNVKNDFSILIIE----DDKEFADMLTQFLENLFP--YAKIKIAYN---------P-------FDAGDLL-HTVKPDV 57 (143)
T ss_dssp --------CEEEEEC----SCHHHHHHHHHHHHHHCT--TCEEEEECS---------H-------HHHHHHH-HHTCCSE
T ss_pred CcccccCCceEEEEE----CCHHHHHHHHHHHHhccC--ccEEEEECC---------H-------HHHHHHH-HhcCCCE
Confidence 4433 4456788775 455666778888888 89 88 554433 1 1122222 2247999
Q ss_pred EEEcCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 78 LIIDFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 78 vI~D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
||.|.... -+..+.++ .++|.+.++...
T Consensus 58 ii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 58 VMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp EEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred EEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCC
Confidence 99997653 23333332 257777776544
No 122
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=41.35 E-value=1e+02 Score=22.48 Aligned_cols=75 Identities=9% Similarity=0.155 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
.+|+++- .|-.-...+...|...| ++|+.+.+ . .+.++.+ +..+||+||.|...+
T Consensus 4 ~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~l-~~~~~dlvi~D~~l~~~ 60 (138)
T 3c3m_A 4 YTILVVD----DSPMIVDVFVTMLERGG--YRPITAFS---------G-------EECLEAL-NATPPDLVLLDIMMEPM 60 (138)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESCCSSS
T ss_pred ceEEEEe----CCHHHHHHHHHHHHHcC--ceEEEeCC---------H-------HHHHHHH-hccCCCEEEEeCCCCCC
Confidence 4676664 45555566778888889 88875432 1 1122111 224799999998654
Q ss_pred hHHHHHHHc-------CCCeEEEeccc
Q 039208 86 VALQVSCSL-------NIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~-------giP~v~~~~~~ 105 (331)
-+..+.+++ ++|.+.++...
T Consensus 61 ~g~~~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 61 DGWETLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp CHHHHHHHHHHSTTTTTSCEEEEESSC
T ss_pred CHHHHHHHHHcCcccCCCCEEEEECCC
Confidence 344444332 57887776543
No 123
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=41.29 E-value=51 Score=31.36 Aligned_cols=81 Identities=6% Similarity=-0.107 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--hHHH-----------hhhHHHHHHHHHhhcCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--QLAL-----------LNSPNLHKTLIIQSKTSN 74 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p~~~-----------~~~~~l~~~l~~l~~~~~ 74 (331)
.|++++.-+ .| ...+++.|.+.| .+|+.+.+....... .+.. .....+++.++ ..+
T Consensus 349 Krv~i~g~~--~~---~~~la~~L~ElG--m~vv~~gt~~~~~~d~~~l~~~~~~~~~i~~~~d~~el~~~i~----~~~ 417 (492)
T 3u7q_A 349 KRVMLYIGG--LR---PRHVIGAYEDLG--MEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVK----RIK 417 (492)
T ss_dssp CEEEECBSS--SH---HHHTHHHHHTTT--CEEEEEEESSCCHHHHHHHHTTSCTTCEEEESCBHHHHHHHHH----HHC
T ss_pred CEEEEECCC--ch---HHHHHHHHHHCC--CEEEEEeCCCCCHHHHHHHHHhCCCCcEEEcCCCHHHHHHHHH----hcC
Confidence 367775433 34 345777788999 999887664322100 0000 01222333333 348
Q ss_pred ccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 75 LKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 75 ~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
||++|... ....+|+++|||++.+.
T Consensus 418 pDL~ig~~---~~~~ia~k~gIP~~~~~ 442 (492)
T 3u7q_A 418 PDLIGSGI---KEKFIFQKMGIPFREMH 442 (492)
T ss_dssp CSEEEECH---HHHHHHHHTTCCEEESS
T ss_pred CcEEEeCc---chhHHHHHcCCCEEecc
Confidence 99999874 46789999999998643
No 124
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=41.22 E-value=70 Score=30.59 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-h----HHHhh----------hHHHHHHHHHhhcC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-Q----LALLN----------SPNLHKTLIIQSKT 72 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p----~~~~~----------~~~l~~~l~~l~~~ 72 (331)
.+++++. .-.-..+|++.|.+.| .+|+.+.+......- . +++.. ...+.++ +++++.
T Consensus 361 krv~i~g-----d~~~~~~la~~L~ElG--m~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~~~~d~~~l-~~~i~~ 432 (519)
T 1qgu_B 361 KKFGLYG-----DPDFVMGLTRFLLELG--CEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINCDLWHF-RSLMFT 432 (519)
T ss_dssp CEEEEES-----CHHHHHHHHHHHHHTT--CEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEESCCHHHH-HHHHHH
T ss_pred CEEEEEC-----CchHHHHHHHHHHHCC--CEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEEECCCHHHH-HHHHhh
Confidence 3677663 3344567888888999 999877665432110 0 01100 0111222 222233
Q ss_pred CCccEEEEcCcchhHHHHHHHc-------CCCeEEE
Q 039208 73 SNLKTLIIDFFHKVALQVSCSL-------NIPTYLF 101 (331)
Q Consensus 73 ~~~d~vI~D~~~~~~~~vA~~~-------giP~v~~ 101 (331)
.++|++|.+.. ...+|+++ |||++.+
T Consensus 433 ~~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 433 RQPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HCCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred cCCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 47999999864 57788888 9999865
No 125
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=40.99 E-value=92 Score=21.91 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
++|+++- .+-.-...+.+.|.+.| ++|+.+.+ ...+. +.+. ..+||+||.|....
T Consensus 6 ~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~~~a~----~~~~----~~~~dlvi~d~~~~~~ 62 (127)
T 2gkg_A 6 KKILIVE----SDTALSATLRSALEGRG--FTVDETTD---------GKGSV----EQIR----RDRPDLVVLAVDLSAG 62 (127)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHHT--CEEEEECC---------HHHHH----HHHH----HHCCSEEEEESBCGGG
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhcC--ceEEEecC---------HHHHH----HHHH----hcCCCEEEEeCCCCCC
Confidence 4777764 45556667888888889 99875443 11111 1222 23699999997654
Q ss_pred -hHHHHHHH-------cCCCeEEE
Q 039208 86 -VALQVSCS-------LNIPTYLF 101 (331)
Q Consensus 86 -~~~~vA~~-------~giP~v~~ 101 (331)
-+..+.++ .++|.+.+
T Consensus 63 ~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 63 QNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp CBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred CCHHHHHHHHhcCccccCCCEEEE
Confidence 23333332 36888877
No 126
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=40.27 E-value=1e+02 Score=22.31 Aligned_cols=75 Identities=9% Similarity=-0.087 Sum_probs=45.5
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC-CCccEEEEcCc
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT-SNLKTLIIDFF 83 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~-~~~d~vI~D~~ 83 (331)
+.+.+|+++- .+-.-...+...|.+.| ++|+.+.+ ..+.++.+ +. .++|+||.|..
T Consensus 13 ~~~~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~----------------~~~al~~l-~~~~~~dlvilD~~ 69 (138)
T 2b4a_A 13 MQPFRVTLVE----DEPSHATLIQYHLNQLG--AEVTVHPS----------------GSAFFQHR-SQLSTCDLLIVSDQ 69 (138)
T ss_dssp -CCCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS----------------HHHHHHTG-GGGGSCSEEEEETT
T ss_pred CCCCeEEEEC----CCHHHHHHHHHHHHHcC--CEEEEeCC----------------HHHHHHHH-HhCCCCCEEEEeCC
Confidence 4456777664 45555667788888889 88865433 12233322 33 57999999986
Q ss_pred ch--hHHHHHHHc-----CCCeEEEe
Q 039208 84 HK--VALQVSCSL-----NIPTYLFY 102 (331)
Q Consensus 84 ~~--~~~~vA~~~-----giP~v~~~ 102 (331)
.. -+..+.+++ ++|.+.++
T Consensus 70 l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 70 LVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp CTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred CCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 64 344444443 46766665
No 127
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=39.80 E-value=1.6e+02 Score=24.38 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
++|+++- .|-.-...|...|.+.| +.|..+.+ . .+.++.+ ...+||+||.|...+
T Consensus 38 ~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~DlvllD~~lp~~ 94 (249)
T 3q9s_A 38 QRILVIE----DDHDIANVLRMDLTDAG--YVVDHADS---------A-------MNGLIKA-REDHPDLILLDLGLPDF 94 (249)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEECCSCHH
T ss_pred CEEEEEE----CCHHHHHHHHHHHHHCC--CEEEEeCC---------H-------HHHHHHH-hcCCCCEEEEcCCCCCC
Confidence 5677764 45566667778888888 87765432 1 1222222 234799999998765
Q ss_pred hHHHHHHH----cCCCeEEEeccc
Q 039208 86 VALQVSCS----LNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 95 ~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 95 DGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHHTTCCCCEEEEESCC
T ss_pred CHHHHHHHHHcCCCCCEEEEECCC
Confidence 34444443 368888776554
No 128
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=39.40 E-value=1.4e+02 Score=24.40 Aligned_cols=38 Identities=8% Similarity=-0.098 Sum_probs=33.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
++..|.++.-++.|=...-+.+|.+.+.+| .+|.|+.-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEe
Confidence 345688999999999999999999999999 99998853
No 129
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=39.33 E-value=35 Score=28.61 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=50.9
Q ss_pred EEEEcCCCCCCHHH----HHHHHHHHHhc-CCceEEEEEeCCCCCCcc-----------------hHH-HhhhHHHHHHH
Q 039208 10 LFFNPSPGSSHLLS----MDELGKLILTH-YPYFSVTIIISTFPTLRG-----------------QLA-LLNSPNLHKTL 66 (331)
Q Consensus 10 i~~~p~p~~gH~~p----~~~la~~L~~~-G~~h~Vt~~~~~~~~~~~-----------------p~~-~~~~~~l~~~l 66 (331)
|+++.=--.|.++| ++..|++|++. | -+|+.++........ +-+ ..........+
T Consensus 6 ilV~~E~~~g~l~~~s~ell~~A~~La~~~g--~~v~av~~G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l 83 (217)
T 3ih5_A 6 LFVYCEIEEGIVADVSLELLTKGRSLANELN--CQLEAVVAGTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSIL 83 (217)
T ss_dssp EEEECCEETTEECHHHHHHHHHHHHHHHHHT--CCEEEEEEESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHH
T ss_pred EEEEEECcCCEECHHHHHHHHHHHHHHHhcC--CeEEEEEECCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHHHH
Confidence 55554333344443 46677788763 6 566655433221111 111 11223344455
Q ss_pred HHhhcCCCccEEEEcCcch---hHHHHHHHcCCCeEEEecc
Q 039208 67 IIQSKTSNLKTLIIDFFHK---VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 67 ~~l~~~~~~d~vI~D~~~~---~~~~vA~~~giP~v~~~~~ 104 (331)
.++++..+||+|+.-.... .+..+|.++|+|.+...+.
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv~~ 124 (217)
T 3ih5_A 84 VNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTS 124 (217)
T ss_dssp HHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSCSE
T ss_pred HHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceEEE
Confidence 5555555899998776443 5667999999998765443
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=39.09 E-value=65 Score=30.20 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
.-|+++-.++.|=..-...||..|+++| ++|.++..+.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~D~~R 140 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCSDTWR 140 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcc
Confidence 3477777889999999999999999999 999998876544
No 131
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.63 E-value=45 Score=27.84 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=34.4
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
..+.++++.+.++-.|-+...=++..|..+| ++|+++..
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G--~~Vi~LG~ 128 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANG--FQIVDLGV 128 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTS--CEEEECCS
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCC--CeEEEcCC
Confidence 4467899999999999999999999999999 99998765
No 132
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=38.17 E-value=1.7e+02 Score=24.32 Aligned_cols=83 Identities=10% Similarity=-0.011 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCC-H--HHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 8 IRLFFNPSPGSSH-L--LSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 8 ~~i~~~p~p~~gH-~--~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
.+|.++.. ..++ + .-...+-+++.++| .++.+..+... .......++.++. .++|.||.....
T Consensus 6 ~~Ig~i~~-~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~------~~~~~~~~~~l~~-----~~vdgiIi~~~~ 71 (291)
T 3l49_A 6 KTIGITAI-GTDHDWDLKAYQAQIAEIERLG--GTAIALDAGRN------DQTQVSQIQTLIA-----QKPDAIIEQLGN 71 (291)
T ss_dssp CEEEEEES-CCSSHHHHHHHHHHHHHHHHTT--CEEEEEECTTC------HHHHHHHHHHHHH-----HCCSEEEEESSC
T ss_pred cEEEEEeC-CCCChHHHHHHHHHHHHHHHcC--CEEEEEcCCCC------HHHHHHHHHHHHH-----cCCCEEEEeCCC
Confidence 35665543 3333 2 23455667778899 99988765311 1112222333322 379999876543
Q ss_pred h----hHHHHHHHcCCCeEEEecc
Q 039208 85 K----VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 85 ~----~~~~vA~~~giP~v~~~~~ 104 (331)
. -....+.+.|||.|.+...
T Consensus 72 ~~~~~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 72 LDVLNPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESCC
T ss_pred hhhhHHHHHHHHHCCCcEEEecCC
Confidence 1 2334566679999987643
No 133
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=38.13 E-value=1.8e+02 Score=24.71 Aligned_cols=97 Identities=5% Similarity=-0.033 Sum_probs=59.2
Q ss_pred cccEEEEEc-C-CCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC----C-Ccc--------------h---------HH
Q 039208 6 IIIRLFFNP-S-PGSSHLLSMDELGKLILTHYPYFSVTIIISTFP----T-LRG--------------Q---------LA 55 (331)
Q Consensus 6 ~~~~i~~~p-~-p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~----~-~~~--------------p---------~~ 55 (331)
++++.+|+. . .+.|=..-...|++.|.++| .+|.+.=+... . ... | ..
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G--~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~ 101 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAG--IDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAA 101 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTT--CCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHH
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHH
Confidence 345544444 3 34688899999999999999 99988742100 0 000 1 11
Q ss_pred H--------hhhHHHHHHHHHhhcCCCccEEEEcCcc----------hhHHHHHHHcCCCeEEEecccH
Q 039208 56 L--------LNSPNLHKTLIIQSKTSNLKTLIIDFFH----------KVALQVSCSLNIPTYLFYASSA 106 (331)
Q Consensus 56 ~--------~~~~~l~~~l~~l~~~~~~d~vI~D~~~----------~~~~~vA~~~giP~v~~~~~~~ 106 (331)
. ...+.+.+.++++ ..++|++|.|.-- ....++|+.++.|.+.+.....
T Consensus 102 aa~~~~~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~ 168 (251)
T 3fgn_A 102 AAEHAGMALPARDQIVRLIADL--DRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADL 168 (251)
T ss_dssp HHHHTTCCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSST
T ss_pred HHHHcCCCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCC
Confidence 0 0111223333333 4579999998621 2457899999999998876543
No 134
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=38.05 E-value=1.1e+02 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++.+|||+|+-.|-.+- +.-++|.++| |+|..+.+.
T Consensus 1 ~~~mmrIvf~Gtp~fa~-----~~L~~L~~~~--~~v~~Vvt~ 36 (317)
T 3rfo_A 1 SNAMIKVVFMGTPDFSV-----PVLRRLIEDG--YDVIGVVTQ 36 (317)
T ss_dssp CCTTSEEEEECCSTTHH-----HHHHHHHHTT--CEEEEEECC
T ss_pred CCCceEEEEEeCCHHHH-----HHHHHHHHCC--CcEEEEEeC
Confidence 46789999998876542 3346777889 999877664
No 135
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.03 E-value=1.7e+02 Score=24.24 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=48.6
Q ss_pred CCCCCcccEEEEEcCCCCCC---HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccE
Q 039208 1 MSESWIIIRLFFNPSPGSSH---LLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH---~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~ 77 (331)
|+-+.+...|.++.. ..++ ..-+..+-+++.++| .++.+..+... .....+.++.+ ...++|.
T Consensus 1 ~s~~~~s~~Igvi~~-~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~----------~~~~~~~~~~l-~~~~vdg 66 (276)
T 3jy6_A 1 MSLTQSSKLIAVIVA-NIDDYFSTELFKGISSILESRG--YIGVLFDANAD----------IEREKTLLRAI-GSRGFDG 66 (276)
T ss_dssp ----CCCCEEEEEES-CTTSHHHHHHHHHHHHHHHTTT--CEEEEEECTTC----------HHHHHHHHHHH-HTTTCSE
T ss_pred CCcCCCCcEEEEEeC-CCCchHHHHHHHHHHHHHHHCC--CEEEEEeCCCC----------HHHHHHHHHHH-HhCCCCE
Confidence 566566666766553 3232 222344566777889 99988765311 11112333333 2458999
Q ss_pred EEEcCcch-hHHHHHHHcCCCeEEEec
Q 039208 78 LIIDFFHK-VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 78 vI~D~~~~-~~~~vA~~~giP~v~~~~ 103 (331)
||.-.... -....+.+.|+|.|.+..
T Consensus 67 iIi~~~~~~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 67 LILQSFSNPQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp EEEESSCCHHHHHHHHTTSSCEEEESC
T ss_pred EEEecCCcHHHHHHHHHCCCCEEEEec
Confidence 98765443 233445567999998764
No 136
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=37.98 E-value=1.2e+02 Score=22.42 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCC-CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc------
Q 039208 1 MSE-SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK------ 71 (331)
Q Consensus 1 ~~~-~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~------ 71 (331)
|+. +.++++|+++- .|-.-...+...|...| + +|..+.. . .+.++.+.+
T Consensus 1 m~~~~~~~~~ILivd----d~~~~~~~l~~~L~~~~--~~~~v~~~~~---------~-------~~al~~l~~~~~~~~ 58 (149)
T 1i3c_A 1 MSDESNPPKVILLVE----DSKADSRLVQEVLKTST--IDHELIILRD---------G-------LAAMAFLQQQGEYEN 58 (149)
T ss_dssp -----CCCEEEEEEC----CCHHHHHHHHHHHHSCC--SCEEEEEECS---------H-------HHHHHHHTTCGGGTT
T ss_pred CCcccCCCCeEEEEE----CCHHHHHHHHHHHHhcC--CCccEEEeCC---------H-------HHHHHHHHhcccccc
Confidence 444 34456777764 45555666777888777 5 5544322 1 122222211
Q ss_pred CCCccEEEEcCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 72 TSNLKTLIIDFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 72 ~~~~d~vI~D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
..+||+||.|...+ -+..+.++ -++|.+.++...
T Consensus 59 ~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 59 SPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 24799999998654 23333332 257888776654
No 137
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=37.98 E-value=27 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=25.8
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|++.....+++++-. |.+- ..+++.|.++| ++|+++..
T Consensus 13 ~~~~~~~~~v~IiG~---G~iG--~~la~~L~~~g--~~V~vid~ 50 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC---GRLG--SLIANLASSSG--HSVVVVDK 50 (155)
T ss_dssp ----CCCCEEEEECC---SHHH--HHHHHHHHHTT--CEEEEEES
T ss_pred hhcccCCCcEEEECC---CHHH--HHHHHHHHhCC--CeEEEEEC
Confidence 566666778888843 5433 56789999999 99998865
No 138
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=37.83 E-value=51 Score=30.92 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-h----HHHhhh---------HHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG-Q----LALLNS---------PNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p----~~~~~~---------~~l~~~l~~l~~~~ 73 (331)
.+++++.-+ .-...+++.|.+.| .+|+.+.+......- . ++.... ..+.+ ++++++..
T Consensus 313 krv~i~~~~-----~~~~~l~~~L~elG--~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~-l~~~i~~~ 384 (458)
T 1mio_B 313 KKVALLGDP-----DEIIALSKFIIELG--AIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFD-VHQWIKNE 384 (458)
T ss_dssp CEEEEEECH-----HHHHHHHHHHHTTT--CEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHH-HHHHHHHS
T ss_pred CEEEEEcCc-----hHHHHHHHHHHHCC--CEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHhc
Confidence 356666543 33457788888999 999887665432110 0 011110 12222 22333445
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEEE
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
++|++|.+.. ...+|+++|||++.+
T Consensus 385 ~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 385 GVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp CCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred CCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 8999998864 577899999999875
No 139
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=37.79 E-value=27 Score=31.11 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHH---------HHHhhcCCC
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKT---------LIIQSKTSN 74 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~---------l~~l~~~~~ 74 (331)
++.+.|+.|+-.++.| |..+|+.|+++| ++|+..=..... |.. ..|++. -+.+ ....
T Consensus 1 ~~~~~~i~~iGiGg~G----ms~~A~~L~~~G--~~V~~~D~~~~~---~~~----~~L~~~gi~v~~g~~~~~l-~~~~ 66 (326)
T 3eag_A 1 SNAMKHIHIIGIGGTF----MGGLAAIAKEAG--FEVSGCDAKMYP---PMS----TQLEALGIDVYEGFDAAQL-DEFK 66 (326)
T ss_dssp --CCCEEEEESCCSHH----HHHHHHHHHHTT--CEEEEEESSCCT---THH----HHHHHTTCEEEESCCGGGG-GSCC
T ss_pred CCCCcEEEEEEECHHH----HHHHHHHHHhCC--CEEEEEcCCCCc---HHH----HHHHhCCCEEECCCCHHHc-CCCC
Confidence 3556789999888877 667999999999 999976332111 111 111110 0011 0025
Q ss_pred ccEEEEcCcch---hHHHHHHHcCCCeEE
Q 039208 75 LKTLIIDFFHK---VALQVSCSLNIPTYL 100 (331)
Q Consensus 75 ~d~vI~D~~~~---~~~~vA~~~giP~v~ 100 (331)
+|+||+-+-.. .-...|++.|||.+.
T Consensus 67 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 67 ADVYVIGNVAKRGMDVVEAILNLGLPYIS 95 (326)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEe
Confidence 89999876553 455678888998765
No 140
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=37.65 E-value=42 Score=27.74 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~ 46 (331)
+||++--.++.|-+. ...|.+.|.++ | ++|.++.++
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g--~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPN--VETHLVMSK 37 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTT--CEEEEEECH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccC--CEEEEEECc
Confidence 478888888866655 89999999999 9 999999874
No 141
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=37.34 E-value=1.8e+02 Score=25.30 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
+++.-.|+.|=..-.+++|...+.+| ..|.+++.+..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s 107 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG 107 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 56677889999999999999999999 89999987643
No 142
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=37.01 E-value=82 Score=26.16 Aligned_cols=61 Identities=11% Similarity=-0.061 Sum_probs=36.2
Q ss_pred cEEEEEcCCCC-C-CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 8 IRLFFNPSPGS-S-HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 8 ~~i~~~p~p~~-g-H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
|||++.-|.-+ | -.||...++++|... | ++|....-+ . .+......+.+++++. +||+||+
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~--~~i~~~~lP--v----~~~~~~~~l~~~~~~~----~pd~vi~ 66 (208)
T 1x10_A 1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKIGD--AQVFGRVLP--V----VFGKAKEVLEKTLEEI----KPDIAIH 66 (208)
T ss_dssp CEEEEEEECCCTTCSCCHHHHHHHHHTTCEETT--EEEEEEEEC--S----STTHHHHHHHHHHHHH----CCSEEEE
T ss_pred CEEEEEeecCCCCCCCChHHHHHHHhhccCCCC--eEEEEEEEe--e----EHHHHHHHHHHHHHHh----CCCEEEE
Confidence 45665554332 3 389999999999886 4 665443221 1 1333444555555543 7888874
No 143
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=36.52 E-value=57 Score=30.78 Aligned_cols=37 Identities=8% Similarity=-0.083 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~~~~ 48 (331)
+++.-.|+.|=..-.+++|..++.+ | ..|.+++.+..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~E~s 282 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAMLEES 282 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEESSSC
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEeccCC
Confidence 5566688999999999999999987 8 89999988654
No 144
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.39 E-value=1.9e+02 Score=24.23 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=51.7
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCcc---------hHH--H-h---hhHHHHHHH
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPTLRG---------QLA--L-L---NSPNLHKTL 66 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~~---------p~~--~-~---~~~~l~~~l 66 (331)
+.+++||+|+.++. |+ -+..+.++|.+. + ++|..+.+....... |++ . . ....+.+.+
T Consensus 19 ~~~~~rI~~l~SG~-g~--~~~~~l~~l~~~~~~--~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~ 93 (229)
T 3auf_A 19 QGHMIRIGVLISGS-GT--NLQAILDGCREGRIP--GRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAAL 93 (229)
T ss_dssp BTTCEEEEEEESSC-CH--HHHHHHHHHHTTSSS--EEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHH
T ss_pred cCCCcEEEEEEeCC-cH--HHHHHHHHHHhCCCC--CeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHH
Confidence 34567999997755 43 356667777766 6 898777664332211 211 0 0 011122222
Q ss_pred HHhhcCCCccEEEEcCcch-hHHHHHHHcCCCeEEEecc
Q 039208 67 IIQSKTSNLKTLIIDFFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 67 ~~l~~~~~~d~vI~D~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
.+.++..++|+||.=.|.. -...+-+.+...++-+.++
T Consensus 94 ~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 94 AERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp HHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred HHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 2223455899998765532 3344445555566766655
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=36.12 E-value=86 Score=28.36 Aligned_cols=74 Identities=5% Similarity=-0.177 Sum_probs=46.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------h---HH--HhhhHHHHHHHHHhhcCCCcc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------Q---LA--LLNSPNLHKTLIIQSKTSNLK 76 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p---~~--~~~~~~l~~~l~~l~~~~~~d 76 (331)
++++--|+.|=..-.++++..++..| ..|.|+.++...... + ++ ......+...++.+.+..++|
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 45556688898899999999999998 899999887543311 0 00 000111222333444456899
Q ss_pred EEEEcCcch
Q 039208 77 TLIIDFFHK 85 (331)
Q Consensus 77 ~vI~D~~~~ 85 (331)
+||.|....
T Consensus 142 lvVIDSi~~ 150 (356)
T 3hr8_A 142 LIVVDSVAA 150 (356)
T ss_dssp EEEEECTTT
T ss_pred eEEehHhhh
Confidence 999997543
No 146
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=42.22 E-value=7.6 Score=26.66 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 039208 300 GIRAPKEQAVGALSEGGRSLAVVAELAESFRK 331 (331)
Q Consensus 300 ~a~~l~~~~~~a~~~ggss~~~l~~~v~~~~~ 331 (331)
...++.+.+.+++++|||.-+--.+|+++++|
T Consensus 23 svedIKaKmqasieKg~slPKvE~KF~NyvKn 54 (74)
T 2llh_A 23 SVEDIKAKMQASIEKGGSLPKVEAKFINYVKN 54 (74)
Confidence 46778888999999999999988888888764
No 147
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=35.89 E-value=26 Score=29.45 Aligned_cols=66 Identities=9% Similarity=-0.029 Sum_probs=38.8
Q ss_pred cccEEEEEcCCCCC--CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 6 IIIRLFFNPSPGSS--HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 6 ~~~~i~~~p~p~~g--H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+.|+|++.-|.-+| -+||...++++|...-+.++|....- +. .+......+.+++++ .+||+||+=
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~~~~i~~~~l--Pv----~~~~~~~~l~~~i~~----~~Pd~Vi~v 69 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTIDKLKL--PT----SFKKVDNIINKTLAS----NHYDVVLAI 69 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCSEETTEEEEEEEE--CS----CHHHHHHHHHHHHHH----SCCSEEEEE
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhccccCCcEEEEEEe--ce----ehHhHHHHHHHHHHH----hCCCEEEEe
Confidence 35688877655443 38999999999987411166554322 11 234445555555544 489988853
No 148
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=35.64 E-value=1.6e+02 Score=24.52 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=44.0
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
.++|+++- .+-.-...+...|.+.| ++|+.+... .+.++.+ +..+||+||.|...+
T Consensus 129 ~~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~a~~~----------------~eal~~l-~~~~~dlvl~D~~mp~ 185 (254)
T 2ayx_A 129 DMMILVVD----DHPINRRLLADQLGSLG--YQCKTANDG----------------VDALNVL-SKNHIDIVLSDVNMPN 185 (254)
T ss_dssp CCEEEEEE----SSHHHHHHHHHHHHHHT--SEEEEECCS----------------HHHHHHH-HHSCCSEEEEEESSCS
T ss_pred CCEEEEEe----CCHHHHHHHHHHHHHcC--CEEEEECCH----------------HHHHHHH-HhCCCCEEEEcCCCCC
Confidence 35666664 34444556777787889 988765431 1122222 224799999997553
Q ss_pred -hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 -VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..++++ .++|.+.++...
T Consensus 186 ~~G~~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 186 MDGYRLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp SCCHHHHHHHHHHHCCSCEEEEESST
T ss_pred CCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 22333322 368988876543
No 149
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=35.49 E-value=19 Score=27.19 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=41.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
+++||+++== +-.--..+...|.+.| |+|+..... . .+.++.+ +..+||+||.|...+
T Consensus 7 r~~rILiVdD----~~~~~~~l~~~L~~~G--~~v~~~a~~--------g-------~eAl~~~-~~~~~DlvllDi~mP 64 (123)
T 2lpm_A 7 RRLRVLVVED----ESMIAMLIEDTLCELG--HEVAATASR--------M-------QEALDIA-RKGQFDIAIIDVNLD 64 (123)
T ss_dssp CCCCEEEESS----STTTSHHHHHHHHHHC--CCCCBCSCC--------H-------HHHHHHH-HHCCSSEEEECSSSS
T ss_pred CCCEEEEEeC----CHHHHHHHHHHHHHCC--CEEEEEECC--------H-------HHHHHHH-HhCCCCEEEEecCCC
Confidence 4566777642 1122345667777889 887522111 1 1222222 335899999998775
Q ss_pred --hHHHHHHH---cCCCeEEEe
Q 039208 86 --VALQVSCS---LNIPTYLFY 102 (331)
Q Consensus 86 --~~~~vA~~---~giP~v~~~ 102 (331)
-|..++++ .++|.+.++
T Consensus 65 ~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 65 GEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp SCCSHHHHHHHHHTCCSSCCBC
T ss_pred CCCHHHHHHHHHcCCCCEEEEe
Confidence 34444444 578866543
No 150
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=35.28 E-value=1.2e+02 Score=21.53 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
.+|+++- .|-.-...+...|...| ++|+.+.+ ..+.++.+ +..++|+||.|...+
T Consensus 4 ~~ilivd----d~~~~~~~l~~~l~~~~--~~v~~~~~----------------~~~~~~~~-~~~~~dlvi~D~~l~~~ 60 (126)
T 1dbw_A 4 YTVHIVD----DEEPVRKSLAFMLTMNG--FAVKMHQS----------------AEAFLAFA-PDVRNGVLVTDLRMPDM 60 (126)
T ss_dssp CEEEEEE----SSHHHHHHHHHHHHHTT--CEEEEESC----------------HHHHHHHG-GGCCSEEEEEECCSTTS
T ss_pred CEEEEEc----CCHHHHHHHHHHHHhCC--cEEEEeCC----------------HHHHHHHH-hcCCCCEEEEECCCCCC
Confidence 4566654 34455566777888889 88875432 12223322 345799999997654
Q ss_pred hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 61 ~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 61 SGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred CHHHHHHHHHhcCCCCCEEEEECCC
Confidence 34443333 267888776543
No 151
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.24 E-value=1.3e+02 Score=21.95 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=46.2
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+++|+++- .|-.-...+...|.+.| +.+.+..... ..+.++.+ +..+||+||.|....
T Consensus 4 ~~~~ILivd----d~~~~~~~l~~~L~~~~--~~~~v~~~~~--------------~~~a~~~l-~~~~~dlii~D~~l~ 62 (144)
T 3kht_A 4 RSKRVLVVE----DNPDDIALIRRVLDRKD--IHCQLEFVDN--------------GAKALYQV-QQAKYDLIILDIGLP 62 (144)
T ss_dssp -CEEEEEEC----CCHHHHHHHHHHHHHTT--CCEEEEEESS--------------HHHHHHHH-TTCCCSEEEECTTCG
T ss_pred CCCEEEEEe----CCHHHHHHHHHHHHhcC--CCeeEEEECC--------------HHHHHHHh-hcCCCCEEEEeCCCC
Confidence 346777774 45666677888898899 7633222210 12233332 345799999998654
Q ss_pred --hHHHHHHH-------cCCCeEEEeccc
Q 039208 86 --VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 86 --~~~~vA~~-------~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 63 ~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 63 IANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp GGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred CCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 23333332 258888776543
No 152
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.19 E-value=42 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEecccHHH
Q 039208 60 PNLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYASSASA 108 (331)
Q Consensus 60 ~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~~~~~ 108 (331)
..++..++++ +...+++||.|.. ...+|+++|+|.+.+.++..+.
T Consensus 129 ~e~~~~i~~l-~~~G~~vvVG~~~---~~~~A~~~Gl~~vli~sg~eSI 173 (196)
T 2q5c_A 129 DEITTLISKV-KTENIKIVVSGKT---VTDEAIKQGLYGETINSGEESL 173 (196)
T ss_dssp GGHHHHHHHH-HHTTCCEEEECHH---HHHHHHHTTCEEEECCCCHHHH
T ss_pred HHHHHHHHHH-HHCCCeEEECCHH---HHHHHHHcCCcEEEEecCHHHH
Confidence 3445555555 4468999999865 6799999999999988755443
No 153
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=35.05 E-value=95 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=15.4
Q ss_pred hHHHHHHHcCCCeEEEeccc
Q 039208 86 VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~~ 105 (331)
-.+.+|+++|||.++..++.
T Consensus 252 ~lAl~Ak~~~vPfyV~ap~~ 271 (347)
T 1t9k_A 252 SLAVLAKRNNIPFYVAAPVS 271 (347)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEecccc
Confidence 34568888999999987654
No 154
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.83 E-value=1.3e+02 Score=21.95 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=45.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC-CCccEEEEcCcc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT-SNLKTLIIDFFH 84 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~-~~~d~vI~D~~~ 84 (331)
++.+|+++- .|-.-...|...|.+.|. ++|+.+.+. .+.+..+.+. .+||+||.|...
T Consensus 19 ~~~~ilivd----d~~~~~~~l~~~L~~~g~-~~v~~~~~~----------------~~~~~~~~~~~~~~dlvi~D~~l 77 (146)
T 4dad_A 19 GMINILVAS----EDASRLAHLARLVGDAGR-YRVTRTVGR----------------AAQIVQRTDGLDAFDILMIDGAA 77 (146)
T ss_dssp GGCEEEEEC----SCHHHHHHHHHHHHHHCS-CEEEEECCC----------------HHHHTTCHHHHTTCSEEEEECTT
T ss_pred CCCeEEEEe----CCHHHHHHHHHHHhhCCC-eEEEEeCCH----------------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 346777775 455566677788877763 666654331 1112122122 489999999865
Q ss_pred h--hHHHHHHH----c-CCCeEEEeccc
Q 039208 85 K--VALQVSCS----L-NIPTYLFYASS 105 (331)
Q Consensus 85 ~--~~~~vA~~----~-giP~v~~~~~~ 105 (331)
. -+..+.++ . ++|.+.++...
T Consensus 78 ~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 78 LDTAELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp CCHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCccHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 4 23333332 2 57877776543
No 155
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=34.65 E-value=1.3e+02 Score=21.61 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=43.7
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceE-EEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFS-VTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~-Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
++||+++- .|-.-...+...|.+.| ++ |+.+.. . .+.++.+.+..++|+||.|...+
T Consensus 5 ~~~iLivd----d~~~~~~~l~~~L~~~g--~~~v~~~~~---------~-------~~a~~~~~~~~~~dlvi~D~~~p 62 (129)
T 3h1g_A 5 SMKLLVVD----DSSTMRRIIKNTLSRLG--YEDVLEAEH---------G-------VEAWEKLDANADTKVLITDWNMP 62 (129)
T ss_dssp -CCEEEEC----SCHHHHHHHHHHHHHTT--CCCEEEESS---------H-------HHHHHHHHHCTTCCEEEECSCCS
T ss_pred CcEEEEEe----CCHHHHHHHHHHHHHcC--CcEEEEeCC---------H-------HHHHHHHHhCCCCCEEEEeCCCC
Confidence 45666664 45555666778888888 75 443322 1 12222222234799999998664
Q ss_pred --hHHHHHHH-------cCCCeEEEeccc
Q 039208 86 --VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 86 --~~~~vA~~-------~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 63 ~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 63 EMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp SSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 34444443 257888776544
No 156
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=34.63 E-value=1.3e+02 Score=21.68 Aligned_cols=76 Identities=8% Similarity=0.072 Sum_probs=43.8
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+.+|+++- .|-.-...+...|...| ++|+.+.+ . .+.++.+ +..+||+||.|...+
T Consensus 3 ~~~Ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlvl~D~~l~~ 59 (132)
T 3crn_A 3 LKRILIVD----DDTAILDSTKQILEFEG--YEVEIAAT---------A-------GEGLAKI-ENEFFNLALFXIKLPD 59 (132)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEECSBCSS
T ss_pred ccEEEEEe----CCHHHHHHHHHHHHHCC--ceEEEeCC---------H-------HHHHHHH-hcCCCCEEEEecCCCC
Confidence 34666654 34455566777888889 98874432 1 1122222 224799999997654
Q ss_pred -hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 -VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 60 ~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 60 MEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp SBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred CchHHHHHHHHhhCCCCcEEEEeccc
Confidence 23333332 257877776543
No 157
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=34.42 E-value=1.3e+02 Score=21.78 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=48.7
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC-CCccEEEEcCc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT-SNLKTLIIDFF 83 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~-~~~d~vI~D~~ 83 (331)
.+++|+++- .+-.-...|...|.+ .| ++|+.+.+ ..+.++.+ +. .+||+||.|..
T Consensus 3 ~~~~ilivd----d~~~~~~~l~~~L~~~~~--~~v~~~~~----------------~~~a~~~l-~~~~~~dlvi~D~~ 59 (140)
T 3lua_A 3 LDGTVLLID----YFEYEREKTKIIFDNIGE--YDFIEVEN----------------LKKFYSIF-KDLDSITLIIMDIA 59 (140)
T ss_dssp CCCEEEEEC----SCHHHHHHHHHHHHHHCC--CEEEEECS----------------HHHHHTTT-TTCCCCSEEEECSC
T ss_pred CCCeEEEEe----CCHHHHHHHHHHHHhccC--ccEEEECC----------------HHHHHHHH-hcCCCCcEEEEeCC
Confidence 356787774 455666677888888 89 99885443 12333333 34 68999999987
Q ss_pred ch---hHHHHHH-------HcCCCeEEEeccc
Q 039208 84 HK---VALQVSC-------SLNIPTYLFYASS 105 (331)
Q Consensus 84 ~~---~~~~vA~-------~~giP~v~~~~~~ 105 (331)
.. -+..+.+ ..++|.+.++...
T Consensus 60 l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 60 FPVEKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp SSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred CCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 65 2333332 2368888877554
No 158
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=34.20 E-value=59 Score=25.91 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=49.0
Q ss_pred CcccEEEEE-cCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--hHHHhhhHHHHHHHHHhhcCCCccEEEE-
Q 039208 5 WIIIRLFFN-PSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--QLALLNSPNLHKTLIIQSKTSNLKTLII- 80 (331)
Q Consensus 5 ~~~~~i~~~-p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--p~~~~~~~~l~~~l~~l~~~~~~d~vI~- 80 (331)
+.++||-+- |+++.....-...+.++|.++.+..+ +..|....... +-.......++.-++.+ .+-|+||.
T Consensus 2 ~~M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~--v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i---~~aD~viA~ 76 (162)
T 3ehd_A 2 NAMTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTID--LYLPQENAAINDKSAYADSKMIALADTENV---LASDLLVAL 76 (162)
T ss_dssp --CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEE--EECGGGGSCCCCTTCCCCHHHHHHHHHHHH---HTCSEEEEE
T ss_pred CCccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCE--EECCCccccccccccchHHHHHHHHHHHHH---HHCCEEEEE
Confidence 445564443 34444566667778999988631154 44543222100 00001112223333333 25688776
Q ss_pred -cC-----cchhHHHHHHHcCCCeEEEecc
Q 039208 81 -DF-----FHKVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 81 -D~-----~~~~~~~vA~~~giP~v~~~~~ 104 (331)
|. -..|=.+.|..+|.|++.+.+-
T Consensus 77 ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D 106 (162)
T 3ehd_A 77 LDGPTIDAGVASEIGVAYAKGIPVVALYTD 106 (162)
T ss_dssp CCSSSCCHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEcC
Confidence 32 2235568899999999988654
No 159
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=34.07 E-value=1.4e+02 Score=22.03 Aligned_cols=78 Identities=8% Similarity=0.066 Sum_probs=46.3
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhh--------cCCCcc
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQS--------KTSNLK 76 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~--------~~~~~d 76 (331)
+++|+++- .+-.-...+.+.|.+.| + +|..+.. . .+.++.+. ...+||
T Consensus 4 ~~~ILivd----dd~~~~~~l~~~L~~~g--~~~~v~~~~~---------~-------~~al~~l~~~~~~~~~~~~~~d 61 (152)
T 3heb_A 4 SVTIVMIE----DDLGHARLIEKNIRRAG--VNNEIIAFTD---------G-------TSALNYLFGDDKSGRVSAGRAQ 61 (152)
T ss_dssp -CEEEEEC----CCHHHHHHHHHHHHHTT--CCCCEEEESS---------H-------HHHHHHHHCTTSSSGGGTTCBE
T ss_pred CceEEEEe----CCHHHHHHHHHHHHhCC--CcceEEEeCC---------H-------HHHHHHHhccccccccccCCCC
Confidence 45777764 45566677888888999 7 6655433 1 12222221 245899
Q ss_pred EEEEcCcch--hHHHHHHH-------cCCCeEEEecccH
Q 039208 77 TLIIDFFHK--VALQVSCS-------LNIPTYLFYASSA 106 (331)
Q Consensus 77 ~vI~D~~~~--~~~~vA~~-------~giP~v~~~~~~~ 106 (331)
+||.|.... -+..+.++ .++|.+.++....
T Consensus 62 liilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 62 LVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp EEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred EEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCC
Confidence 999998654 23333332 3688888776543
No 160
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=33.37 E-value=44 Score=27.51 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=31.3
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
-+..||++.-.++.|=+. ...|.+.|.++| ++|.++.++
T Consensus 6 l~~k~IllgvTGs~aa~k-~~~l~~~L~~~g--~~V~vv~T~ 44 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVG-ISSYLLYFKSFF--KEIRVVMTK 44 (194)
T ss_dssp GGGCEEEEEECSCGGGGG-THHHHHHHTTTS--SEEEEEECH
T ss_pred cCCCEEEEEEECHHHHHH-HHHHHHHHHHCC--CEEEEEEch
Confidence 345688888888766554 789999999999 999998874
No 161
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=33.28 E-value=56 Score=29.31 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=22.0
Q ss_pred cccccccCHHH---hhcCcccc---------------chhcCCcEeeccc
Q 039208 240 LPVKSWAPQVD---VLSHDSVV---------------AVRTGVPMVAWPS 271 (331)
Q Consensus 240 ~vv~~W~PQ~~---vL~H~~v~---------------al~~GVP~l~~P~ 271 (331)
+...+|+|+.+ +++..++. |+++|+|+|+...
T Consensus 256 v~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~ 305 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAV 305 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECC
T ss_pred eeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCC
Confidence 45558888653 34444443 9999999999654
No 162
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=32.71 E-value=51 Score=26.65 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.||++.-.++.|=+ -...|.+.|.++| ++|.++.++
T Consensus 6 k~IllgvTGs~aa~-k~~~ll~~L~~~g--~~V~vv~T~ 41 (175)
T 3qjg_A 6 ENVLICLCGSVNSI-NISHYIIELKSKF--DEVNVIAST 41 (175)
T ss_dssp CEEEEEECSSGGGG-GHHHHHHHHTTTC--SEEEEEECT
T ss_pred CEEEEEEeCHHHHH-HHHHHHHHHHHCC--CEEEEEECc
Confidence 47888887776555 4889999999999 999999886
No 163
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=32.70 E-value=46 Score=25.74 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=27.5
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|+++..+.-..++..+..-.+.+-+.+|...++.| ++|++..+
T Consensus 2 ~~~~m~~kl~II~~sg~~d~~~~a~~lA~~Aaa~g--~eV~iF~t 44 (144)
T 2qs7_A 2 MAEEKKKKLSIIVFSGTIDKLMPVGILTSGAAASG--YEVNLFFT 44 (144)
T ss_dssp -----CCEEEEEECCCSHHHHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred ccccccCCEEEEEEcCCHHHHHHHHHHHHHHHHcC--CcEEEEEe
Confidence 44444322233444445566888999999999999 99999876
No 164
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=32.43 E-value=93 Score=28.44 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.5
Q ss_pred hHHHHHHHcCCCeEEEeccc
Q 039208 86 VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~~ 105 (331)
-.+.+|+++|||.++..++.
T Consensus 277 ~lAl~Ak~~~vPfyV~ap~~ 296 (374)
T 2yvk_A 277 GLAILANAFDIPFFVAAPLS 296 (374)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEecccc
Confidence 45678888999999987654
No 165
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=32.32 E-value=61 Score=26.82 Aligned_cols=40 Identities=8% Similarity=-0.119 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCCCCHH-HHHHHHHHHHhcCCceEEEEEeCCCCC
Q 039208 7 IIRLFFNPSPGSSHLL-SMDELGKLILTHYPYFSVTIIISTFPT 49 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~-p~~~la~~L~~~G~~h~Vt~~~~~~~~ 49 (331)
..||++--.++ +..+ =...|.+.|.++| ++|.++.++...
T Consensus 7 ~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g--~eV~vv~T~~A~ 47 (201)
T 3lqk_A 7 GKHVGFGLTGS-HCTYHEVLPQMERLVELG--AKVTPFVTHTVQ 47 (201)
T ss_dssp TCEEEEECCSC-GGGGGGTHHHHHHHHHTT--CEEEEECSSCSC
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHhhCC--CEEEEEEChhHH
Confidence 45788887777 5555 7899999999999 999999886444
No 166
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.29 E-value=1.4e+02 Score=21.33 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=40.9
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .|-.-...+...|. .| ++|..+.+ . .+.++.+ +..+||+||.|....
T Consensus 4 ~~~ilivd----d~~~~~~~l~~~l~-~~--~~v~~~~~---------~-------~~a~~~l-~~~~~dlvi~d~~l~~ 59 (133)
T 3nhm_A 4 KPKVLIVE----NSWTMRETLRLLLS-GE--FDCTTAAD---------G-------ASGLQQA-LAHPPDVLISDVNMDG 59 (133)
T ss_dssp -CEEEEEC----SCHHHHHHHHHHHT-TT--SEEEEESS---------H-------HHHHHHH-HHSCCSEEEECSSCSS
T ss_pred CCEEEEEc----CCHHHHHHHHHHHh-CC--cEEEEECC---------H-------HHHHHHH-hcCCCCEEEEeCCCCC
Confidence 46777774 34444455555555 88 88876543 1 1222222 234799999997653
Q ss_pred -hHHHHHH---H----cCCCeEEEecc
Q 039208 86 -VALQVSC---S----LNIPTYLFYAS 104 (331)
Q Consensus 86 -~~~~vA~---~----~giP~v~~~~~ 104 (331)
-+..+.+ + -++|.+.++..
T Consensus 60 ~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 60 MDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp SCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 2333332 2 16787777654
No 167
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=31.92 E-value=64 Score=24.90 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=47.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHh-------------h-h----HHHHHHHHHhhcC
Q 039208 11 FFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALL-------------N-S----PNLHKTLIIQSKT 72 (331)
Q Consensus 11 ~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~-------------~-~----~~l~~~l~~l~~~ 72 (331)
+|++..- .+-.-++++++.|.+.| +++. .|.. ... +++. . . +.+.+.+ ++
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~lG--f~i~-AT~G-Ta~---~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i----~~ 94 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHNEG--FKLF-ATEA-TSD---WLNANNVPATPVAWPSQEGQNPSLSSIRKLI----RD 94 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHTTT--CEEE-EEHH-HHH---HHHHTTCCCEEECCGGGC-----CBCHHHHH----HT
T ss_pred EEEEecc-cchHHHHHHHHHHHHCC--CEEE-ECch-HHH---HHHHcCCeEEEEEeccCCCcccccccHHHHH----HC
Confidence 4444422 35667889999999999 9853 3432 110 1111 0 1 3344433 45
Q ss_pred CCccEEEEcCcc--------hhHHHHHHHcCCCeEE
Q 039208 73 SNLKTLIIDFFH--------KVALQVSCSLNIPTYL 100 (331)
Q Consensus 73 ~~~d~vI~D~~~--------~~~~~vA~~~giP~v~ 100 (331)
.++|+||.-.-- ......|-++|||++.
T Consensus 95 g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 95 GSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp TSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred CCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 689999985432 2556788999999764
No 168
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=31.85 E-value=97 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCccEEEEcCcch-h--HHHHH----HHcCCCeEEEecc
Q 039208 73 SNLKTLIIDFFHK-V--ALQVS----CSLNIPTYLFYAS 104 (331)
Q Consensus 73 ~~~d~vI~D~~~~-~--~~~vA----~~~giP~v~~~~~ 104 (331)
.+||+||.|...+ - |..++ +..++|.+.++..
T Consensus 204 ~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 204 RTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp CCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 4799999998765 1 22222 2238998887754
No 169
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=31.75 E-value=1.5e+02 Score=21.62 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=44.5
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
..+++|+++- .+-.-...+...|.+.| ++|+.+.+ ...+. +.+.. .+||+||.|...
T Consensus 6 ~~~~~iLivd----~~~~~~~~l~~~L~~~g--~~v~~~~~---------~~~a~----~~l~~----~~~dlii~d~~l 62 (147)
T 2zay_A 6 GKWWRIMLVD----TQLPALAASISALSQEG--FDIIQCGN---------AIEAV----PVAVK----THPHLIITEANM 62 (147)
T ss_dssp --CEEEEEEC----TTGGGGHHHHHHHHHHT--EEEEEESS---------HHHHH----HHHHH----HCCSEEEEESCC
T ss_pred CCCceEEEEe----CCHHHHHHHHHHHHHcC--CeEEEeCC---------HHHHH----HHHHc----CCCCEEEEcCCC
Confidence 3456777775 33444566777888889 98885433 11111 12222 279999999755
Q ss_pred h--hHHHHHHH-------cCCCeEEEeccc
Q 039208 85 K--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 85 ~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
. -+..+.++ .++|.+.++...
T Consensus 63 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 63 PKISGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp SSSCHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred CCCCHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 3 23333332 358888876554
No 170
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=31.73 E-value=88 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=15.5
Q ss_pred hHHHHHHHcCCCeEEEeccc
Q 039208 86 VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~~ 105 (331)
-.+.+|+++|||.++..++.
T Consensus 249 ~lAl~Ak~~~vPfyV~a~~~ 268 (351)
T 1t5o_A 249 TVSVVAKHHNIPFYVAAPKA 268 (351)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEeCccc
Confidence 45678888999999987654
No 171
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=31.70 E-value=1.6e+02 Score=21.79 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=41.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...+...| +.| ++|+.+.+ . .+.++.+.+..++|+||.|....
T Consensus 4 ~~~ILivd----d~~~~~~~l~~~L-~~~--~~v~~~~~---------~-------~~a~~~l~~~~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 4 NERILLVD----DDYSLLNTLKRNL-SFD--FEVTTCES---------G-------PEALACIKKSDPFSVIMVDMRMPG 60 (151)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHH-TTT--SEEEEESS---------H-------HHHHHHHHHSCCCSEEEEESCCSS
T ss_pred CCeEEEEe----CCHHHHHHHHHHh-ccC--ceEEEeCC---------H-------HHHHHHHHcCCCCCEEEEeCCCCC
Confidence 45777775 3444455566666 458 99885543 1 22222221233479999997653
Q ss_pred -hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 -VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ -++|.+.++...
T Consensus 61 ~~g~~~~~~l~~~~~~~~ii~~s~~~ 86 (151)
T 3kcn_A 61 MEGTEVIQKARLISPNSVYLMLTGNQ 86 (151)
T ss_dssp SCHHHHHHHHHHHCSSCEEEEEECGG
T ss_pred CcHHHHHHHHHhcCCCcEEEEEECCC
Confidence 23333332 257777666543
No 172
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=30.81 E-value=63 Score=26.93 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 4 SWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 4 ~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
...+.||++.-.++.+-+. ...|.+.|.++| +|.++.++
T Consensus 16 ~l~~k~IllgvTGsiaa~k-~~~ll~~L~~~g---~V~vv~T~ 54 (209)
T 1mvl_A 16 TPRKPRVLLAASGSVAAIK-FGNLCHCFTEWA---EVRAVVTK 54 (209)
T ss_dssp ---CCEEEEEECSSGGGGG-HHHHHHHHHTTS---EEEEEECT
T ss_pred ccCCCEEEEEEeCcHHHHH-HHHHHHHHhcCC---CEEEEEcc
Confidence 3445689999988887666 889999998887 77777765
No 173
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=30.60 E-value=86 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.||++.-.++.|-+ =...+.+.|.++| ++|.++.++
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g--~~V~vv~T~ 37 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELD--FSVDLVISR 37 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTT--CEEEEEECH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCC--CEEEEEECh
Confidence 47888888888854 5789999999999 999998874
No 174
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=30.38 E-value=1.6e+02 Score=21.39 Aligned_cols=76 Identities=4% Similarity=0.066 Sum_probs=44.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- .+-.-...|...|...| ++|+.+.. . .+.++.+ ...+||+||.|...+
T Consensus 4 ~~~Ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~al~~~-~~~~~dlvllD~~l~~ 60 (136)
T 2qzj_A 4 QTKILIID----GDKDNCQKLKGFLEEKG--ISIDLAYN---------C-------EEAIGKI-FSNKYDLIFLEIILSD 60 (136)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS---------H-------HHHHHHH-HHCCCSEEEEESEETT
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCC--CEEEEECC---------H-------HHHHHHH-HhcCCCEEEEeCCCCC
Confidence 35666664 34445566778888889 88864432 1 1122221 224799999998654
Q ss_pred -hHHHHHHHc----CCCeEEEeccc
Q 039208 86 -VALQVSCSL----NIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~~----giP~v~~~~~~ 105 (331)
-+..+.+++ .+|.+.++...
T Consensus 61 ~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 61 GDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp EEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred CCHHHHHHHHccCCCCCEEEEEcCC
Confidence 344444432 68887776544
No 175
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=30.20 E-value=73 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHH--HHHHHHHHhcCCceEEEEEeC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSM--DELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~--~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|++.+++. +.++..+-+|+.... +.++..++..| |+|+++-.
T Consensus 1 ~~~~Mkk~-~ivv~~~P~g~~~~~~al~~a~a~~a~~--~~v~Vff~ 44 (136)
T 2hy5_B 1 MSEVVKKF-MYLNRKAPYGTIYAWEALEVVLIGAAFD--QDVCVLFL 44 (136)
T ss_dssp ----CCEE-EEEECSCTTTSSHHHHHHHHHHHHGGGC--CEEEEEEC
T ss_pred CccchhEE-EEEEeCCCCCcHHHHHHHHHHHHHHhCC--CCEEEEEE
Confidence 55544332 334445556765555 66688889999 99988754
No 176
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=29.54 E-value=1.3e+02 Score=25.05 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchhHHH-HHHHcCCCeEEEe
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKVALQ-VSCSLNIPTYLFY 102 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~~~~-vA~~~giP~v~~~ 102 (331)
...+-+++.++| .++.+..+... .. ...+.++.+ ...++|.||......-... .+.+.|+|.|.+.
T Consensus 27 ~~gi~~~~~~~g--~~~~~~~~~~~------~~----~~~~~~~~l-~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 27 ARGVEDVALAHG--YQVLIGNSDND------IK----KAQGYLATF-VSHNCTGMISTAFNENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHTT--CCEEEEECTTC------HH----HHHHHHHHH-HHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHCC--CEEEEEeCCCC------HH----HHHHHHHHH-HhCCCCEEEEecCChHHHHHHHHcCCCCEEEEe
Confidence 345566777889 99887765321 11 112233333 2348999998764444455 6677899999875
Q ss_pred cc
Q 039208 103 AS 104 (331)
Q Consensus 103 ~~ 104 (331)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 177
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=29.46 E-value=2.1e+02 Score=25.57 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=43.5
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch-
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK- 85 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~- 85 (331)
+++|+++- -+-.-...|...|.+.| ++|+.+.+ . .+.++.+ +..+||+||.|...+
T Consensus 5 ~~~iLivd----D~~~~~~~l~~~L~~~g--~~v~~a~~---------~-------~~al~~~-~~~~~dlvllD~~mp~ 61 (394)
T 3eq2_A 5 SATLLIID----DDEVVRESLAAYLEDSN--FKVLQALN---------G-------LQGLQIF-ESEQPDLVICDLRMPQ 61 (394)
T ss_dssp EEEEEEEC----SCHHHHHHHHHHHHHTT--EEEEECSS---------H-------HHHHHHH-HHSCCSEEEECCCSSS
T ss_pred CCEEEEEe----CCHHHHHHHHHHHHhCC--CEEEEECC---------H-------HHHHHHH-hhCCCCEEEEcCCCCC
Confidence 45677764 34455566778888889 98863322 1 1222222 234799999998664
Q ss_pred -hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 -VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 -~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ -++|.+.++...
T Consensus 62 ~~G~~~~~~lr~~~~~~pii~lt~~~ 87 (394)
T 3eq2_A 62 IDGLELIRRIRQTASETPIIVLSGAG 87 (394)
T ss_dssp SCTHHHHHHHHHTTCCCCEEEC---C
T ss_pred CCHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 23444443 268887776543
No 178
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=29.44 E-value=92 Score=28.83 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~ 48 (331)
+++.-.|+.|=..-.+.+|...+. .| ..|.|++.+..
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~ 240 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMP 240 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 566778899999999999998886 48 89999887643
No 179
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=29.31 E-value=1.6e+02 Score=21.24 Aligned_cols=84 Identities=10% Similarity=-0.087 Sum_probs=45.3
Q ss_pred CCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHh-hcCCCccEEE
Q 039208 3 ESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQ-SKTSNLKTLI 79 (331)
Q Consensus 3 ~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l-~~~~~~d~vI 79 (331)
+..++++|+++- .|-.-...+...|.+.| + +|..+.+ ...+.. .+.+. ....+||+||
T Consensus 5 ~~~~~~~iLivd----d~~~~~~~l~~~l~~~~--~~~~v~~~~~---------~~~a~~----~l~~~~~~~~~~dlvi 65 (146)
T 3ilh_A 5 DTRKIDSVLLID----DDDIVNFLNTTIIRMTH--RVEEIQSVTS---------GNAAIN----KLNELYAAGRWPSIIC 65 (146)
T ss_dssp --CCEEEEEEEC----SCHHHHHHHHHHHHTTC--CEEEEEEESS---------HHHHHH----HHHHHHTSSCCCSEEE
T ss_pred ccCccceEEEEe----CCHHHHHHHHHHHHhcC--CCeeeeecCC---------HHHHHH----HHHHhhccCCCCCEEE
Confidence 344567888875 34455566778888888 7 5554432 111111 12211 1236899999
Q ss_pred EcCcch--hHHHHH----H-----HcCCCeEEEeccc
Q 039208 80 IDFFHK--VALQVS----C-----SLNIPTYLFYASS 105 (331)
Q Consensus 80 ~D~~~~--~~~~vA----~-----~~giP~v~~~~~~ 105 (331)
.|...+ -+..+. + ..++|.+.++...
T Consensus 66 ~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 66 IDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp EESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred EcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 998654 233322 2 1357766665443
No 180
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=29.24 E-value=84 Score=27.96 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=23.7
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++++||+|+-.|.. -.+.-++|.++| |+|..+.+.
T Consensus 5 ~~~mrivf~Gt~~f-----a~~~L~~L~~~~--~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGTPDF-----AARHLAALLSSE--HEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECCSHH-----HHHHHHHHHTSS--SEEEEEECC
T ss_pred ccCCEEEEEecCHH-----HHHHHHHHHHCC--CcEEEEEcC
Confidence 34689999977633 234457788889 998876663
No 181
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=29.12 E-value=98 Score=26.15 Aligned_cols=64 Identities=9% Similarity=-0.089 Sum_probs=38.9
Q ss_pred cccEEEEEcCCCC-C-CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEE
Q 039208 6 IIIRLFFNPSPGS-S-HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLII 80 (331)
Q Consensus 6 ~~~~i~~~p~p~~-g-H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~ 80 (331)
++.+|++.-|.-+ | -+||...++++|... | ++|....- +. .+......+.+++++. +||+||+
T Consensus 22 ~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~~i~~--~~i~~~~l--Pv----~y~~~~~~l~~~i~~~----~Pd~Vih 89 (228)
T 4hps_A 22 SMKTILVTAFDPFGGEAINPSWEAIKPLQGSQVFG--ANIEICQI--PC----IFDTSLEHLYAAVDKY----QPELVIS 89 (228)
T ss_dssp CCEEEEEEEECCCTTCSCCHHHHHHGGGTTCEETT--EEEEEEEE--CS----STTHHHHHHHHHHHHH----CCSEEEE
T ss_pred CCCEEEEEeccCCCCCCCChHHHHHHHhcCcCCCC--cEEEEEEc--ce----EeHHHHHHHHHHHHhh----CCCEEEE
Confidence 3456777665433 3 389999999999874 4 56543321 11 2334455555555544 8998885
Q ss_pred c
Q 039208 81 D 81 (331)
Q Consensus 81 D 81 (331)
=
T Consensus 90 v 90 (228)
T 4hps_A 90 V 90 (228)
T ss_dssp E
T ss_pred e
Confidence 3
No 182
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=29.05 E-value=94 Score=28.50 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=15.4
Q ss_pred hHHHHHHHcCCCeEEEeccc
Q 039208 86 VALQVSCSLNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~~giP~v~~~~~~ 105 (331)
-.+.+|+++|||.++..++.
T Consensus 281 ~lAl~Ak~~~vPfyV~ap~~ 300 (383)
T 2a0u_A 281 NLAVSAKFHGVKLYVAAPTT 300 (383)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEeCCcc
Confidence 34567888999999987664
No 183
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=29.04 E-value=1.6e+02 Score=25.14 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.0
Q ss_pred ccEEEEEc--CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNP--SPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p--~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+++++++. .++.|=-.-...||..|++.| .+|.++-.+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G--~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAG--YKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 45555554 467888999999999999999 999888654
No 184
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=29.01 E-value=63 Score=26.83 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=29.5
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTF 47 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~ 47 (331)
.+.||++.-.++.+=+ -...|.+.|.+ +| ++|.++.++.
T Consensus 18 ~~k~IllgvTGsiaa~-k~~~lv~~L~~~~g--~~V~vv~T~~ 57 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAAL-KLPLLVSKLLDIPG--LEVAVVTTER 57 (206)
T ss_dssp SSEEEEEEECSSGGGG-THHHHHHHHC---C--EEEEEEECTG
T ss_pred CCCEEEEEEeChHHHH-HHHHHHHHHhcccC--CEEEEEECHh
Confidence 3468888888886644 45899999999 89 9999998864
No 185
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=28.98 E-value=2.2e+02 Score=22.64 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
++|+++- .|-.-...+...|.+.| ++|..+.+ . .+.++.+ ...+||+||.|...+
T Consensus 3 ~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~-------~~a~~~~-~~~~~dlvllD~~l~~~ 59 (225)
T 1kgs_A 3 VRVLVVE----DERDLADLITEALKKEM--FTVDVCYD---------G-------EEGMYMA-LNEPFDVVILDIMLPVH 59 (225)
T ss_dssp CEEEEEC----SSHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEEESCCSSS
T ss_pred ceEEEEe----CCHHHHHHHHHHHHHCC--CEEEEECC---------H-------HHHHHHH-hcCCCCEEEEeCCCCCC
Confidence 4666654 45555667788888889 99875432 1 1122211 224799999998654
Q ss_pred hHHHHHHH-----cCCCeEEEecccH
Q 039208 86 VALQVSCS-----LNIPTYLFYASSA 106 (331)
Q Consensus 86 ~~~~vA~~-----~giP~v~~~~~~~ 106 (331)
-+..+.++ -++|.+.++....
T Consensus 60 ~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 60 DGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 23333332 2688888776543
No 186
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=28.90 E-value=1.5e+02 Score=24.73 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=36.6
Q ss_pred EEEEEcCCCC-C-CHHHHHHHHHHHHhc---CCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 9 RLFFNPSPGS-S-HLLSMDELGKLILTH---YPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 9 ~i~~~p~p~~-g-H~~p~~~la~~L~~~---G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+|++.-|.-+ | -.||...++++|... | ++|....- +. .+......+.+++++. +||+||+=
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~--~~i~~~~l--Pv----~~~~~~~~l~~~i~~~----~Pd~Vi~v 68 (220)
T 1a2z_A 3 KVLITGFEPFGGDSKNPTEQIAKYFDRKQIGN--AMVYGRVL--PV----SVKRATIELKRYLEEI----KPEIVINL 68 (220)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTCEETT--EEEEEEEE--CS----CHHHHHHHHHHHHHHH----CCSEEEEE
T ss_pred EEEEeeccCCCCCCCCcHHHHHHHhhcccCCC--eEEEEEEE--Ee----EHHHHHHHHHHHHHHh----CCCEEEEe
Confidence 3666554333 3 389999999999876 4 55544322 11 2334555555555543 78888753
No 187
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=28.57 E-value=2.2e+02 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCCH-HHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHL-LSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~-~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
..+++.|..+.|.. .-...+...|.++| .++++..++
T Consensus 11 ~~vi~Np~sG~~~~~~~~~~i~~~l~~~~--~~~~~~~t~ 48 (304)
T 3s40_A 11 VLLIVNPKAGQGDLHTNLTKIVPPLAAAF--PDLHILHTK 48 (304)
T ss_dssp EEEEECTTCSSSCHHHHHHHHHHHHHHHC--SEEEEEECC
T ss_pred EEEEECcccCCCchHHHHHHHHHHHHHcC--CeEEEEEcc
Confidence 33444444455552 34567788899999 999887665
No 188
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=28.49 E-value=58 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=20.8
Q ss_pred chhcCCcEeecccccchhhhHHHHHhhhccceeeh
Q 039208 259 AVRTGVPMVAWPSNGDQMVNMAFLVEKIRDPLTVA 293 (331)
Q Consensus 259 al~~GVP~l~~P~~~DQ~~na~~v~~~lGvG~~l~ 293 (331)
|+++|+|+|+..-..+++ .+++. |.++-+.
T Consensus 322 A~a~G~PvV~~~~~~~~~----e~v~~-G~~~lv~ 351 (396)
T 3dzc_A 322 APSLGKPVLVMRETTERP----EAVAA-GTVKLVG 351 (396)
T ss_dssp GGGGTCCEEECCSSCSCH----HHHHH-TSEEECT
T ss_pred HHHcCCCEEEccCCCcch----HHHHc-CceEEcC
Confidence 999999999975444543 24454 8777664
No 189
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=28.12 E-value=99 Score=26.01 Aligned_cols=63 Identities=11% Similarity=-0.065 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCC-C-CHHHHHHHHHHHHhc--CCce-EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 7 IIRLFFNPSPGS-S-HLLSMDELGKLILTH--YPYF-SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 7 ~~~i~~~p~p~~-g-H~~p~~~la~~L~~~--G~~h-~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
+++|++.-|.-+ | -+||...++++|... | + +|....- +. .+......+.+++++. +||+||+=
T Consensus 2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~~--~~~i~~~~l--Pv----~y~~~~~~l~~~i~~~----~Pd~Vihv 69 (223)
T 3ro0_A 2 EKKVLLTGFDPFGGETVNPSWEAVKRLNGAAEG--PASIVSEQV--PT----VFYKSLAVLREAMKKH----QPDIIICV 69 (223)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHTTTCEET--TEEEEEEEE--CS----CTTHHHHHHHHHHHHH----CCSEEEEE
T ss_pred CCEEEEEeCCCCCCCCCChHHHHHHHhccccCC--CcEEEEEEe--ee----EehhHHHHHHHHHHHh----CCCEEEEe
Confidence 457776665433 3 389999999999874 5 4 4443221 11 2334455566666554 89988853
No 190
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=28.04 E-value=2.7e+02 Score=23.35 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCC-HHH-HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch
Q 039208 8 IRLFFNPSPGSSH-LLS-MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH-~~p-~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~ 85 (331)
.+|+++....... +.- ...+-+++.++| .++.++...... .......++.++. .++|.||.-....
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~-----~~~~~~~i~~l~~-----~~vdgiIi~~~~~ 72 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALN--VTVEYRGAAQYD-----IQEQITVLEQAIA-----KNPAGIAISAIDP 72 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHT--CEEEEEECSSSC-----HHHHHHHHHHHHH-----HCCSEEEECCSST
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcC--CEEEEeCCCcCC-----HHHHHHHHHHHHH-----hCCCEEEEcCCCH
Confidence 4566665443332 322 335556777889 999875422111 1122222333322 3799998765432
Q ss_pred ----hHHHHHHHcCCCeEEEec
Q 039208 86 ----VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 86 ----~~~~vA~~~giP~v~~~~ 103 (331)
-....+.+.|||.|.+..
T Consensus 73 ~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 73 VELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp TTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCcEEEECC
Confidence 234456678999998764
No 191
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.62 E-value=2.1e+02 Score=25.59 Aligned_cols=73 Identities=5% Similarity=-0.105 Sum_probs=49.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHH--------------hhhHHHHHHHHHhhcCCCc
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLAL--------------LNSPNLHKTLIIQSKTSNL 75 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~--------------~~~~~l~~~l~~l~~~~~~ 75 (331)
+++.--|+.|=..-.++++..++.+| ..|.|++.+...+.. +.. .....+.+.++.+.+..++
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 56667888999999999999999999 999999886543311 000 0112233344444445679
Q ss_pred cEEEEcCcch
Q 039208 76 KTLIIDFFHK 85 (331)
Q Consensus 76 d~vI~D~~~~ 85 (331)
|+||.|....
T Consensus 143 ~lVVIDsl~~ 152 (356)
T 1u94_A 143 DVIVVDSVAA 152 (356)
T ss_dssp SEEEEECGGG
T ss_pred CEEEEcCHHH
Confidence 9999998654
No 192
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=27.25 E-value=79 Score=23.18 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
.+|++++ |.|.+- ..+++.|.++| |+|+++..
T Consensus 4 ~m~i~Ii---G~G~iG--~~~a~~L~~~g--~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIA---GIGRVG--YTLAKSLSEKG--HDIVLIDI 35 (140)
T ss_dssp -CEEEEE---CCSHHH--HHHHHHHHHTT--CEEEEEES
T ss_pred CCEEEEE---CCCHHH--HHHHHHHHhCC--CeEEEEEC
Confidence 4688887 336553 46789999999 99998864
No 193
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.21 E-value=1.9e+02 Score=21.30 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=39.3
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCce-EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC-CCccEEEEcCc
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTH-YPYF-SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT-SNLKTLIIDFF 83 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h-~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~-~~~d~vI~D~~ 83 (331)
+++|+++- .+-.-...|...|.+. | + .|..+.+ . .+.++.+ +. .+||+||.|..
T Consensus 3 ~~~iLivd----d~~~~~~~l~~~L~~~~g--~~~v~~~~~---------~-------~~a~~~l-~~~~~~dlvi~d~~ 59 (154)
T 2qsj_A 3 LTVVLIVD----DHHLIRAGAKNLLEGAFS--GMRVEGAET---------V-------SDALAFL-EADNTVDLILLDVN 59 (154)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHHCT--TEEEEEESS---------H-------HHHHHHH-HTTCCCSEEEECC-
T ss_pred ccEEEEEc----CCHHHHHHHHHHHHhCCC--ceEEEEecC---------H-------HHHHHHH-hccCCCCEEEEeCC
Confidence 46777764 4556666777888877 7 6 4444332 1 2223222 23 58999999976
Q ss_pred ch--hHHHHHH----H-cCCCeEEEecc
Q 039208 84 HK--VALQVSC----S-LNIPTYLFYAS 104 (331)
Q Consensus 84 ~~--~~~~vA~----~-~giP~v~~~~~ 104 (331)
.. -+..+.+ . -++|.+.++..
T Consensus 60 l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 60 LPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp -----CHHHHHHHHHHCTTSEEEEC---
T ss_pred CCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 53 1222222 2 25777766543
No 194
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.17 E-value=2.5e+02 Score=22.72 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
++|+++- .|-.-...|...|.+.| ++|..+.+. ..+ + +.+.. .+||+||.|...+
T Consensus 6 ~~ILivd----d~~~~~~~l~~~L~~~g--~~v~~~~~~---------~~a---l-~~l~~----~~~dlvilD~~l~~~ 62 (238)
T 2gwr_A 6 QRILVVD----DDASLAEMLTIVLRGEG--FDTAVIGDG---------TQA---L-TAVRE----LRPDLVLLDLMLPGM 62 (238)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEECCG---------GGH---H-HHHHH----HCCSEEEEESSCSSS
T ss_pred CeEEEEe----CCHHHHHHHHHHHHHCC--CEEEEECCH---------HHH---H-HHHHh----CCCCEEEEeCCCCCC
Confidence 4787775 45566667888888889 998754331 111 1 12222 2799999998654
Q ss_pred hHHHHHHH----cCCCeEEEecc
Q 039208 86 VALQVSCS----LNIPTYLFYAS 104 (331)
Q Consensus 86 ~~~~vA~~----~giP~v~~~~~ 104 (331)
-+..+.++ .++|.+.++..
T Consensus 63 ~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 63 NGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CHHHHHHHHHTTCCCCEEEEEET
T ss_pred CHHHHHHHHHhCCCCcEEEEeCC
Confidence 23444333 36888877644
No 195
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=27.15 E-value=82 Score=23.83 Aligned_cols=37 Identities=0% Similarity=-0.018 Sum_probs=26.3
Q ss_pred cEEEEEc-CC--CCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNP-SP--GSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p-~p--~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.+++|+- .+ +......-+.+|...++.| |+|++.-+.
T Consensus 16 ~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g--~eV~vFf~~ 55 (134)
T 3mc3_A 16 XXILIVVTHGPEDLDRTYAPLFMASISASME--YETSVFFMI 55 (134)
T ss_dssp CEEEEEECCCGGGTHHHHHHHHHHHHHHHTT--CEEEEEECT
T ss_pred ceEEEEEccCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEe
Confidence 3554443 44 3456778888899999999 999987654
No 196
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=27.06 E-value=53 Score=25.03 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=21.5
Q ss_pred CcccccccCHH---HhhcCcccc---------------chhcCC-cEeec
Q 039208 239 GLPVKSWAPQV---DVLSHDSVV---------------AVRTGV-PMVAW 269 (331)
Q Consensus 239 ~~vv~~W~PQ~---~vL~H~~v~---------------al~~GV-P~l~~ 269 (331)
++.+ +|+|+. ++++..++. |+++|+ |+|+.
T Consensus 57 ~v~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~ 105 (166)
T 3qhp_A 57 KAEF-GFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIAN 105 (166)
T ss_dssp EEEC-CCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEEC
T ss_pred eEEE-eecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEee
Confidence 5566 888875 345555554 999995 99993
No 197
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=26.95 E-value=2.3e+02 Score=26.15 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTF 47 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~ 47 (331)
+++.-.||.|=..-.+.++..++. .| ..|.|++.+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~ 242 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEM 242 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 667778899999999999998886 58 8999988764
No 198
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=26.75 E-value=2e+02 Score=27.98 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=35.4
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
.+.+|++.+.++-.|-+...-++..|..+| ++|..+...
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G--~eVi~LG~~ 135 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNN--YEIVDLGVM 135 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTT--CEEEECCSS
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCC--CEEEECCCC
Confidence 467899999999999999999999999999 999988654
No 199
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=26.66 E-value=2.8e+02 Score=23.19 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=47.0
Q ss_pred ccEEEEEcCCCCCC-HH-HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 7 IIRLFFNPSPGSSH-LL-SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 7 ~~~i~~~p~p~~gH-~~-p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
+.+|.++....... +. -...+-+++.++| .++.+..+....+ ..... +.++.+. ..++|.||.-...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~----~~~~~----~~i~~l~-~~~vdgiii~~~~ 71 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELK--VDLQILAPPGAND----VPKQV----QFIESAL-ATYPSGIATTIPS 71 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHT--CEEEEECCSSSCC----HHHHH----HHHHHHH-HTCCSEEEECCCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhC--cEEEEECCCCcCC----HHHHH----HHHHHHH-HcCCCEEEEeCCC
Confidence 45677765433221 22 2334556677889 9998876532111 11122 2333332 2479999876543
Q ss_pred h----hHHHHHHHcCCCeEEEec
Q 039208 85 K----VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 85 ~----~~~~vA~~~giP~v~~~~ 103 (331)
. -....+.+.|||.|.+..
T Consensus 72 ~~~~~~~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 72 DTAFSKSLQRANKLNIPVIAVDT 94 (297)
T ss_dssp SSTTHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 2 234456677999998753
No 200
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=26.66 E-value=57 Score=26.75 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=36.6
Q ss_pred HHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcC-------------cchhHHHHHHH
Q 039208 27 LGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDF-------------FHKVALQVSCS 93 (331)
Q Consensus 27 la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~-------------~~~~~~~vA~~ 93 (331)
.|++|.++| ..||+++-. +. ..++++- ..++|.||.-. -..-.+.+|++
T Consensus 22 ta~eL~~~g--I~vtlI~Ds-----------a~---~~~m~~~--~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~ 83 (191)
T 1w2w_B 22 TAYELVYDK--IPSTLITDS-----------SI---AYRIRTS--PIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQ 83 (191)
T ss_dssp HHHHHHHHT--CCBEEBCGG-----------GH---HHHHHHC--SSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHH
T ss_pred HHHHHHHcC--CCEEEEech-----------HH---HHHHHhC--CCCCCEEEECccEEecCCCEEecccHHHHHHHHHH
Confidence 589999999 999987531 11 1122220 01255554332 22345678888
Q ss_pred cCCCeEEEeccc
Q 039208 94 LNIPTYLFYASS 105 (331)
Q Consensus 94 ~giP~v~~~~~~ 105 (331)
+|+|.++...+.
T Consensus 84 ~~vPf~V~a~~~ 95 (191)
T 1w2w_B 84 FGIKFFVVAPKT 95 (191)
T ss_dssp HTCEEEEECCGG
T ss_pred cCCCEEEecccc
Confidence 999999987553
No 201
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=26.64 E-value=80 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|||++. ++.|.+- ..|+++|.++| |+|+.++-
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~~G--~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNARG--HEVTLVSR 32 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTT--CEEEEEES
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHHCC--CEEEEEEC
Confidence 566554 4556543 56899999999 99998864
No 202
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=26.51 E-value=71 Score=26.59 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=21.3
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.+.+||+|.-...+...|+++|||+..+..
T Consensus 36 ~I~~Visn~~~a~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 36 EIVAVFSDKAEAGGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCG
T ss_pred EEEEEEECCcccHHHHHHHHcCCCEEEeCc
Confidence 456677765444466789999999888654
No 203
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=25.83 E-value=31 Score=30.15 Aligned_cols=38 Identities=11% Similarity=-0.247 Sum_probs=24.7
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
|+-+..+++|.|+-.+..| ..+|+.|+++| |+|+++..
T Consensus 1 M~~~~~~~~I~iIG~G~mG-----~~~a~~l~~~G--~~V~~~dr 38 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMG-----MGAARSCLRAG--LSTWGADL 38 (303)
T ss_dssp ------CCEEEEECCSHHH-----HHHHHHHHHTT--CEEEEECS
T ss_pred CCCCCCCCeEEEECCCHHH-----HHHHHHHHHCC--CeEEEEEC
Confidence 6656667889998554444 46889999999 99998743
No 204
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.78 E-value=89 Score=24.84 Aligned_cols=67 Identities=4% Similarity=-0.047 Sum_probs=39.7
Q ss_pred CcccEEEEEcCCC--------CC---CHH-HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcC
Q 039208 5 WIIIRLFFNPSPG--------SS---HLL-SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKT 72 (331)
Q Consensus 5 ~~~~~i~~~p~p~--------~g---H~~-p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~ 72 (331)
.+++++.+++..- .| +.| |+ |++.|.+.| ++|+....- .--...+.+.+..+...
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~--L~~~L~~~G--~~v~~~~iV---------~Dd~~~i~~al~~~~a~ 79 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDI--IKQLLIENG--HKIIGYSLV---------PDDKIKILKAFTDALSI 79 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHH--HHHHHHHTT--CEEEEEEEE---------CSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHH--HHHHHHHCC--CEEEEEEEe---------CCCHHHHHHHHHHHHhc
Confidence 3457888887642 12 222 33 788999999 999876542 11122334444443334
Q ss_pred CCccEEEEcCcc
Q 039208 73 SNLKTLIIDFFH 84 (331)
Q Consensus 73 ~~~d~vI~D~~~ 84 (331)
.+.|+||+.--.
T Consensus 80 ~~~DlVittGG~ 91 (178)
T 3iwt_A 80 DEVDVIISTGGT 91 (178)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCCEEEecCCc
Confidence 578999987644
No 205
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=25.43 E-value=1.8e+02 Score=20.40 Aligned_cols=75 Identities=9% Similarity=0.047 Sum_probs=43.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
.+|+++- .|-.-...+...|.+.| ++|..+.+ ...+ +. .+. ..+||+||.|...+
T Consensus 4 ~~ilivd----d~~~~~~~l~~~l~~~~--~~v~~~~~---------~~~a---~~-~~~----~~~~dlvl~D~~l~~~ 60 (124)
T 1srr_A 4 EKILIVD----DQSGIRILLNEVFNKEG--YQTFQAAN---------GLQA---LD-IVT----KERPDLVLLDMKIPGM 60 (124)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS---------HHHH---HH-HHH----HHCCSEEEEESCCTTC
T ss_pred ceEEEEe----CCHHHHHHHHHHHHHCC--cEEEEeCC---------HHHH---HH-HHh----ccCCCEEEEecCCCCC
Confidence 3666664 35555666777888889 98764332 1111 11 122 23799999997654
Q ss_pred hHHHHHHH-----cCCCeEEEeccc
Q 039208 86 VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~-----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 61 ~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 61 DGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CHHHHHHHHHHhCCCCCEEEEEccC
Confidence 23433333 257877776543
No 206
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=25.41 E-value=2.3e+02 Score=23.45 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=49.6
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCCCCcc---------hHHH----h--hhHHHHHHHHHh
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFPTLRG---------QLAL----L--NSPNLHKTLIIQ 69 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~~~~~---------p~~~----~--~~~~l~~~l~~l 69 (331)
+++||+++-++.-+.+ ..|..+..+ .+ ++|+.+.+....... |.+. . ......+.+.+.
T Consensus 4 ~~~riavl~SG~Gsnl---~all~~~~~~~~--~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~ 78 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNL---QAIIGAIQKGLA--IEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKT 78 (215)
T ss_dssp CCEEEEEEESSCCHHH---HHHHHHHHTTCS--EEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCcHHH---HHHHHHHHcCCC--CEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHH
Confidence 3578988887553333 344444444 35 899888775332210 2111 0 011122223333
Q ss_pred hcCCCccEEEEcCcch-hHHHHHHHcCCCeEEEecc
Q 039208 70 SKTSNLKTLIIDFFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 70 ~~~~~~d~vI~D~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
+++.++|+||.-.|.. -...+-+.+.-.++-++++
T Consensus 79 l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 79 IDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp HHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred HHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 4566899999876532 3344445555566777666
No 207
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=25.29 E-value=2e+02 Score=24.88 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=29.2
Q ss_pred cEEEEEc--CCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNP--SPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p--~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
++++++. .++.|=..-...||..|++.| .+|.++-.+
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID~D 142 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSD--QKVLFIDAD 142 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCC--CcEEEEECC
Confidence 4544444 467888999999999999999 999888654
No 208
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=25.19 E-value=2.1e+02 Score=21.08 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=45.1
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHh-cCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILT-HYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~-~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
++++|+++- .+-.-...|...|.+ .| ++|+..... . .+.++.+ +..+||+||.|...
T Consensus 4 ~~~~ILivd----d~~~~~~~l~~~L~~~~~--~~v~~~~~~--------~-------~~a~~~l-~~~~~dlii~D~~l 61 (153)
T 3cz5_A 4 STARIMLVD----DHPIVREGYRRLIERRPG--YAVVAEAAD--------A-------GEAYRLY-RETTPDIVVMDLTL 61 (153)
T ss_dssp CCEEEEEEC----SCHHHHHHHHHHHTTSTT--EEEEEEESS--------H-------HHHHHHH-HTTCCSEEEECSCC
T ss_pred cccEEEEEC----CcHHHHHHHHHHHhhCCC--cEEEEEeCC--------H-------HHHHHHH-hcCCCCEEEEecCC
Confidence 346777775 455556677777777 68 887633321 1 2222222 23479999999765
Q ss_pred h--hHHHHHHH-----cCCCeEEEeccc
Q 039208 85 K--VALQVSCS-----LNIPTYLFYASS 105 (331)
Q Consensus 85 ~--~~~~vA~~-----~giP~v~~~~~~ 105 (331)
. -+..+.++ -++|.+.++...
T Consensus 62 ~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 62 PGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp SSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3 23333332 268888776543
No 209
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=24.96 E-value=67 Score=26.73 Aligned_cols=39 Identities=10% Similarity=-0.070 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCCCHHH-HHHHHHHHHhcCCceEEEEEeCCCC
Q 039208 7 IIRLFFNPSPGSSHLLS-MDELGKLILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p-~~~la~~L~~~G~~h~Vt~~~~~~~ 48 (331)
..||++.-.+| +..+- ...|.+.|.++| ++|.++.++..
T Consensus 5 ~k~IllgiTGs-iaayk~~~~ll~~L~~~g--~eV~vv~T~~A 44 (207)
T 3mcu_A 5 GKRIGFGFTGS-HCTYEEVMPHLEKLIAEG--AEVRPVVSYTV 44 (207)
T ss_dssp TCEEEEEECSC-GGGGTTSHHHHHHHHHTT--CEEEEEECC--
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHHhCC--CEEEEEEehHH
Confidence 35788877776 44554 789999999999 99999988643
No 210
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.83 E-value=1.8e+02 Score=20.42 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=41.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce-EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYF-SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h-~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
++++|+++- .|-.-...+...|.+.| + .|+.+.+ . .+.++.+ +..++|+||.|...
T Consensus 5 ~~~~ilivd----d~~~~~~~l~~~L~~~g--~~~v~~~~~---------~-------~~a~~~~-~~~~~dlvl~D~~l 61 (129)
T 1p6q_A 5 EKIKVLIVD----DQVTSRLLLGDALQQLG--FKQITAAGD---------G-------EQGMKIM-AQNPHHLVISDFNM 61 (129)
T ss_dssp SCCCEEEEC----SSHHHHHHHHHHHHTTT--CSCEECCSS---------H-------HHHHHHH-HTSCCSEEEECSSS
T ss_pred ccCeEEEEc----CCHHHHHHHHHHHHHCC--CcEEEecCC---------H-------HHHHHHH-HcCCCCEEEEeCCC
Confidence 345777764 34445566777787778 7 4543221 1 1222222 23479999999865
Q ss_pred h--hHHHHHHHc-------CCCeEEEecc
Q 039208 85 K--VALQVSCSL-------NIPTYLFYAS 104 (331)
Q Consensus 85 ~--~~~~vA~~~-------giP~v~~~~~ 104 (331)
+ -+..+.+++ ++|.+.++..
T Consensus 62 ~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 62 PKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp CSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred CCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 4 345555443 3555555443
No 211
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.78 E-value=1.9e+02 Score=20.53 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc------CCCccEEE
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK------TSNLKTLI 79 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~------~~~~d~vI 79 (331)
++|+++- .+-.-...+.+.|.+.| + +|+.+.+ ..+.++.+.+ ..+||+||
T Consensus 3 ~~ilivd----d~~~~~~~l~~~L~~~~--~~~~v~~~~~----------------~~~a~~~l~~~~~~~~~~~~dlvi 60 (140)
T 1k68_A 3 KKIFLVE----DNKADIRLIQEALANST--VPHEVVTVRD----------------GMEAMAYLRQEGEYANASRPDLIL 60 (140)
T ss_dssp CEEEEEC----CCHHHHHHHHHHHHTCS--SCCEEEEECS----------------HHHHHHHHTTCGGGGSCCCCSEEE
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhcC--CCceEEEECC----------------HHHHHHHHHcccccccCCCCcEEE
Confidence 4566554 45556667888888888 7 6665443 1223333311 15899999
Q ss_pred EcCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 80 IDFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 80 ~D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
.|.... -+..+.++ .++|.+.++...
T Consensus 61 ~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 61 LXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp ECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred EecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 997654 33333332 357888876554
No 212
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=24.70 E-value=40 Score=27.89 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|+|+|..-+|.|=..-...||..|+++| ++|.++-..
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGD 37 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEEC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 4688877778888999999999999999 999888654
No 213
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=24.50 E-value=59 Score=29.60 Aligned_cols=35 Identities=0% Similarity=-0.145 Sum_probs=22.6
Q ss_pred ccEEEEEc---CCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 7 IIRLFFNP---SPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 7 ~~~i~~~p---~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
+|||++++ +| .+.-.-...+++.|+++| +|++++.
T Consensus 14 ~MkIl~is~~~~p-~~~~~~~~~l~~~l~~~G---~V~vi~~ 51 (406)
T 2hy7_A 14 RPCYLVLSSHDFR-TPRRANIHFITDQLALRG---TTRFFSL 51 (406)
T ss_dssp CSCEEEEESSCTT-SSSCCHHHHHHHHHHHHS---CEEEEEC
T ss_pred CceEEEEecccCC-ChhhhhHhHHHHHHHhCC---ceEEEEe
Confidence 57898887 44 222222345788898888 7777754
No 214
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.47 E-value=65 Score=30.66 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHH-HhcCCceEEEEEeCCCCCCcchHHH-------------hhhHHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLI-LTHYPYFSVTIIISTFPTLRGQLAL-------------LNSPNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L-~~~G~~h~Vt~~~~~~~~~~~p~~~-------------~~~~~l~~~l~~l~~~~ 73 (331)
.+++++.-+ .-..++++.| .+.| .+|..+.+...... ..++ .-...+++.++ ..
T Consensus 304 krv~i~gd~-----~~~~~l~~~L~~elG--m~vv~~gt~~~~~~-~~~~~~l~~~~~~v~~~~D~~el~~~i~----~~ 371 (511)
T 2xdq_B 304 KKAVVFGDN-----THAAAMTKILSREMG--IHVVWAGTYCKYDA-DWFRAEVAGFCDEVLITDDHTVVGDAIA----RV 371 (511)
T ss_dssp CEEEEEECH-----HHHHHHHHHHHHHHC--CEEEEEEESCGGGH-HHHHHHHTTTSSEEEECCCHHHHHHHHH----HH
T ss_pred CEEEEEcCC-----hHHHHHHHHHHHhCC--CEEEEeecCCCCch-HHHHHHHHhcCCcEEEeCCHHHHHHHHH----hc
Confidence 467776322 3366888888 6899 99987665422210 0011 01112233333 34
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEEEe
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYLFY 102 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~~~ 102 (331)
+||++|.+. ....+|+++|||++.+.
T Consensus 372 ~pDl~ig~~---~~r~~a~k~gip~~~i~ 397 (511)
T 2xdq_B 372 EPAAIFGTQ---MERHVGKRLNIPCGVIA 397 (511)
T ss_dssp CCSEEEECH---HHHHHHHHHTCCEEECS
T ss_pred CCCEEEecc---chHHHHHhcCCCeEecc
Confidence 899999874 46788999999998753
No 215
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.41 E-value=41 Score=25.80 Aligned_cols=32 Identities=16% Similarity=-0.087 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIS 45 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~ 45 (331)
+.|++++- .|++- ..+++.|.++| |+|+++..
T Consensus 3 ~~~vlI~G---~G~vG--~~la~~L~~~g--~~V~vid~ 34 (153)
T 1id1_A 3 KDHFIVCG---HSILA--INTILQLNQRG--QNVTVISN 34 (153)
T ss_dssp CSCEEEEC---CSHHH--HHHHHHHHHTT--CCEEEEEC
T ss_pred CCcEEEEC---CCHHH--HHHHHHHHHCC--CCEEEEEC
Confidence 35787773 46554 78899999999 99999875
No 216
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=24.32 E-value=1.8e+02 Score=20.07 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--hHHHHHH----H
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--VALQVSC----S 93 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~----~ 93 (331)
|-.-...+...|...| ++|+.+.+ .... + +.+. ..+||+||.|...+ -+..+.+ .
T Consensus 10 ~~~~~~~l~~~l~~~~--~~v~~~~~---------~~~a---~-~~~~----~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 10 EKPISDIIKFNMTKEG--YEVVTAFN---------GREA---L-EQFE----AEQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CHHHHHHHHHHHHHTT--CEEEEESS---------HHHH---H-HHHH----HHCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cEEEEecC---------HHHH---H-HHHH----hCCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 3444556777788889 98875432 1111 1 1122 23799999997654 2333333 3
Q ss_pred cCCCeEEEecccH
Q 039208 94 LNIPTYLFYASSA 106 (331)
Q Consensus 94 ~giP~v~~~~~~~ 106 (331)
.++|.+.++....
T Consensus 71 ~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 71 SSVPILMLSAKDS 83 (120)
T ss_dssp CCCCEEEEESCCS
T ss_pred CCCCEEEEecCCc
Confidence 4688888765543
No 217
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=24.25 E-value=1e+02 Score=26.69 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=54.6
Q ss_pred CcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------hH---------HH-hhhHHH--HH
Q 039208 5 WIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRG--------QL---------AL-LNSPNL--HK 64 (331)
Q Consensus 5 ~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~--------p~---------~~-~~~~~l--~~ 64 (331)
..+|||++..==|. |--=+..|+++|.+ + |+|+++.+....+-. |+ +. ...|.= .-
T Consensus 9 ~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~--~~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~~~~v~GTPaDCV~l 84 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-YAKGLAILAKTLAD-L--GEVDVVAPDRNRSGASNSLTLNAPLHIKNLENGMISVEGTPTDCVHL 84 (261)
T ss_dssp --CCEEEEECSSCT-TCHHHHHHHHHHTT-T--SEEEEEEESSCCTTCTTCCCCSSCEEEEECTTSCEEESSCHHHHHHH
T ss_pred CCCCeEEEEcCCCC-CCHHHHHHHHHHHh-c--CCEEEEecCCCCcCcccceecCCCeEEEEecCCeEEECCCHHHHHHH
Confidence 44589999986554 44557778888877 8 899999987655421 20 00 001111 11
Q ss_pred HHHHhhcCCCccEEEEcC----------cchhHHHHHHH---cCCCeEEEecc
Q 039208 65 TLIIQSKTSNLKTLIIDF----------FHKVALQVSCS---LNIPTYLFYAS 104 (331)
Q Consensus 65 ~l~~l~~~~~~d~vI~D~----------~~~~~~~vA~~---~giP~v~~~~~ 104 (331)
.+..++ ..+||+||+-. ++.-+...|.+ +|||.+.|+..
T Consensus 85 al~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 136 (261)
T 3ty2_A 85 AITGVL-PEMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLG 136 (261)
T ss_dssp HTTTTS-SSCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEEC
T ss_pred HHHHhc-CCCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcC
Confidence 122232 35799999753 23333444443 59999999864
No 218
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=24.22 E-value=1.2e+02 Score=30.70 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCCccEEEEcCcch--hHHHHHHHcCCCeEEEe
Q 039208 72 TSNLKTLIIDFFHK--VALQVSCSLNIPTYLFY 102 (331)
Q Consensus 72 ~~~~d~vI~D~~~~--~~~~vA~~~giP~v~~~ 102 (331)
..+||+|.+..... .+..+|+.+|+|.+...
T Consensus 405 ~~~PDVIHsH~~~sglva~llar~~gvP~V~T~ 437 (816)
T 3s28_A 405 NGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 437 (816)
T ss_dssp SSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEE
Confidence 34799998754322 35667888999988754
No 219
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=23.96 E-value=2e+02 Score=28.82 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcchh------HHHHH---HH
Q 039208 23 SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHKV------ALQVS---CS 93 (331)
Q Consensus 23 p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~~------~~~vA---~~ 93 (331)
....|...|.+.| ++|..+.+. .+.+..+....++||||.|...+- +..+. ++
T Consensus 20 ~~~~L~~~L~~~g--~~v~~a~~g----------------~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 20 AVERLADALSQQN--VTVIKSTSF----------------DDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp HHHHHHHHHHHTT--CEEEEESSH----------------HHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CEEEEECCH----------------HHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 3778889999999 999876541 333333322335999999988632 12122 22
Q ss_pred --cCCCeEEEecc
Q 039208 94 --LNIPTYLFYAS 104 (331)
Q Consensus 94 --~giP~v~~~~~ 104 (331)
.++|.+.++..
T Consensus 82 ~~~~iPIi~lTa~ 94 (755)
T 2vyc_A 82 RQQNVPVFLLGDR 94 (755)
T ss_dssp HSTTCCEEEEECH
T ss_pred hCCCCCEEEEecC
Confidence 36999888754
No 220
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=23.93 E-value=1.7e+02 Score=27.00 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=25.4
Q ss_pred CCCCCcccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 1 MSESWIIIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 1 ~~~~~~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
|+.++. .+|+++. .|. --..+++++.+.| ++|+.+.+.
T Consensus 1 m~~~~~-k~ILI~g---~g~--~~~~i~~a~~~~G--~~vv~v~~~ 38 (461)
T 2dzd_A 1 METRRI-RKVLVAN---RGE--IAIRVFRACTELG--IRTVAIYSK 38 (461)
T ss_dssp --CCCC-SEEEECS---CHH--HHHHHHHHHHHHT--CEEEEEECG
T ss_pred CCCCcC-cEEEEEC---CcH--HHHHHHHHHHHcC--CEEEEEECC
Confidence 666653 4688763 332 3567899999999 999887653
No 221
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.90 E-value=3e+02 Score=22.47 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc---hhHHHHHHHcCCCeEEE
Q 039208 25 DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH---KVALQVSCSLNIPTYLF 101 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~---~~~~~vA~~~giP~v~~ 101 (331)
..+-+++.++| .++.+..+... .. ...+.++.+. ..++|.||.-... .-....+.+.|+|.|.+
T Consensus 22 ~gi~~~a~~~g--~~~~~~~~~~~------~~----~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 22 KQLEQGARARG--YQLLIASSDDQ------PD----SERQLQQLFR-ARRCDALFVASCLPPEDDSYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHHHTT--CEEEEEECTTC------HH----HHHHHHHHHH-HTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCC--CEEEEEeCCCC------HH----HHHHHHHHHH-HcCCCEEEEecCccccHHHHHHHHHcCCCEEEE
Confidence 34556777889 99988765311 11 1122333332 3479998876543 23455667789999987
Q ss_pred ec
Q 039208 102 YA 103 (331)
Q Consensus 102 ~~ 103 (331)
..
T Consensus 89 ~~ 90 (272)
T 3o74_A 89 DR 90 (272)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 222
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=23.51 E-value=88 Score=27.22 Aligned_cols=33 Identities=9% Similarity=-0.011 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhc-CCceEEEEEeC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTH-YPYFSVTIIIS 45 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~-G~~h~Vt~~~~ 45 (331)
.+++|+++..+.. .++++.|.+. |. ++|..+..
T Consensus 3 ~~~~Ili~g~g~~------~~l~~~l~~~~~~-~~v~~~d~ 36 (331)
T 2pn1_A 3 QKPHLLITSAGRR------AKLVEYFVKEFKT-GRVSTADC 36 (331)
T ss_dssp TCCEEEEESCTTC------HHHHHHHHHHCCS-SEEEEEES
T ss_pred ccceEEEecCCch------HHHHHHHHHhcCC-CEEEEEeC
Confidence 4578998855443 4789999886 42 56665543
No 223
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.45 E-value=2.1e+02 Score=20.59 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=46.7
Q ss_pred cccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhc-------C--CC
Q 039208 6 IIIRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSK-------T--SN 74 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~-------~--~~ 74 (331)
.+++|+++- .+-.-...+.+.|.+.| + +|+.+.+ . .+.++.+.+ . .+
T Consensus 5 ~~~~iLivd----d~~~~~~~l~~~L~~~g--~~~~v~~~~~---------~-------~~al~~l~~~~~~~~~~~~~~ 62 (149)
T 1k66_A 5 ATQPLLVVE----DSDEDFSTFQRLLQREG--VVNPIYRCIT---------G-------DQALDFLYQTGSYCNPDIAPR 62 (149)
T ss_dssp TTSCEEEEC----CCHHHHHHHHHHHHHTT--BCSCEEEECS---------H-------HHHHHHHHTCCSSSCGGGCCC
T ss_pred CCccEEEEE----CCHHHHHHHHHHHHHcC--CCceEEEECC---------H-------HHHHHHHHhcccccCcccCCC
Confidence 345677764 45566677888888899 7 6665443 1 222222211 1 57
Q ss_pred ccEEEEcCcch--hHHHHHHH-------cCCCeEEEeccc
Q 039208 75 LKTLIIDFFHK--VALQVSCS-------LNIPTYLFYASS 105 (331)
Q Consensus 75 ~d~vI~D~~~~--~~~~vA~~-------~giP~v~~~~~~ 105 (331)
||+||.|.... -+..+.++ .++|.+.++...
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 99999998654 34444443 247877776544
No 224
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.44 E-value=1.2e+02 Score=28.45 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=49.2
Q ss_pred CCcccccccCHHH---hhcCcccc--------------chhcCCcEeecccc---cchhhhHHHHHhhhccceeehh---
Q 039208 238 WGLPVKSWAPQVD---VLSHDSVV--------------AVRTGVPMVAWPSN---GDQMVNMAFLVEKIRDPLTVAE--- 294 (331)
Q Consensus 238 ~~~vv~~W~PQ~~---vL~H~~v~--------------al~~GVP~l~~P~~---~DQ~~na~~v~~~lGvG~~l~~--- 294 (331)
..+...+|.|+.+ +++..++. |+++|+|+|+.|-. .|- .+..+.+ .|+.-.+..
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~--~~~~l~~-~g~~e~v~~~~~ 510 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARV--AGSLNHH-LGLDEMNVADDA 510 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSH--HHHHHHH-HTCGGGBCSSHH
T ss_pred hHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHH--HHHHHHH-CCChhhhcCCHH
Confidence 3455668888543 34444443 99999999997632 222 1334444 366554532
Q ss_pred ------hHHHH---hHHHHHHHHHHHH--hcCCChHHHHHHHHHH
Q 039208 295 ------RRVIE---GIRAPKEQAVGAL--SEGGRSLAVVAELAES 328 (331)
Q Consensus 295 ------~~lm~---~a~~l~~~~~~a~--~~ggss~~~l~~~v~~ 328 (331)
.++++ ..+++++.+++.+ .+.-+..+..+++.+.
T Consensus 511 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 555 (568)
T 2vsy_A 511 AFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGAL 555 (568)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 23333 3456666666665 4555655555555443
No 225
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.38 E-value=3.2e+02 Score=22.66 Aligned_cols=85 Identities=7% Similarity=-0.092 Sum_probs=46.5
Q ss_pred cccEEEEEcCCCCCC--HH-HHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcC
Q 039208 6 IIIRLFFNPSPGSSH--LL-SMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDF 82 (331)
Q Consensus 6 ~~~~i~~~p~p~~gH--~~-p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~ 82 (331)
+...|.++. |..++ +. -...+-+++.++| .++.+..+... ... ..+.++.+ ...++|.||...
T Consensus 7 ~~~~Igvv~-~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~------~~~----~~~~~~~l-~~~~vdgiIi~~ 72 (291)
T 3egc_A 7 RSNVVGLIV-SDIENVFFAEVASGVESEARHKG--YSVLLANTAED------IVR----EREAVGQF-FERRVDGLILAP 72 (291)
T ss_dssp CCCEEEEEE-SCTTSHHHHHHHHHHHHHHHHTT--CEEEEEECTTC------HHH----HHHHHHHH-HHTTCSEEEECC
T ss_pred CCcEEEEEE-CCCcchHHHHHHHHHHHHHHHCC--CEEEEEeCCCC------HHH----HHHHHHHH-HHCCCCEEEEeC
Confidence 334555554 33333 22 2345556777889 99988765321 111 12233333 234899998765
Q ss_pred cch--hHHHHHHHcCCCeEEEecc
Q 039208 83 FHK--VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 83 ~~~--~~~~vA~~~giP~v~~~~~ 104 (331)
... .....+.+.|+|.|.+...
T Consensus 73 ~~~~~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 73 SEGEHDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp CSSCCHHHHHSSCTTSCEEEESSC
T ss_pred CCCChHHHHHhhccCCCEEEEecc
Confidence 432 3334445669999987643
No 226
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.15 E-value=1.1e+02 Score=29.12 Aligned_cols=81 Identities=7% Similarity=0.036 Sum_probs=47.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHH-HhcCCceEEEEEeCCCCCCcchHHHhh----------hHHHHHHHHHhhcCCCccE
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLI-LTHYPYFSVTIIISTFPTLRGQLALLN----------SPNLHKTLIIQSKTSNLKT 77 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L-~~~G~~h~Vt~~~~~~~~~~~p~~~~~----------~~~l~~~l~~l~~~~~~d~ 77 (331)
+++++ |.-.-..++++.| .+.| .+|..+.+..... ...++.. .+.+.+ ++++++..+||+
T Consensus 282 rv~i~-----gd~~~~~~la~~L~~ElG--m~vv~~gt~~~~~-~~~~~~~~~~~~~~v~i~~D~~e-l~~~i~~~~pDL 352 (525)
T 3aek_B 282 RVFIF-----GDGTHVIAAARIAAKEVG--FEVVGMGCYNREM-ARPLRTAAAEYGLEALITDDYLE-VEKAIEAAAPEL 352 (525)
T ss_dssp EEEEC-----SSHHHHHHHHHHHHHTTC--CEEEEEEESCGGG-HHHHHHHHHHTTCCCEECSCHHH-HHHHHHHHCCSE
T ss_pred EEEEE-----cCchHHHHHHHHHHHHcC--CeeEEEecCchhH-HHHHHHHHHhcCCcEEEeCCHHH-HHHHHhhcCCCE
Confidence 56655 2234467788889 6999 9997765532111 0011100 011222 222223348999
Q ss_pred EEEcCcchhHHHHHHHcCCCeEEE
Q 039208 78 LIIDFFHKVALQVSCSLNIPTYLF 101 (331)
Q Consensus 78 vI~D~~~~~~~~vA~~~giP~v~~ 101 (331)
+|.+. ....+|+++|||++.+
T Consensus 353 ~ig~~---~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 353 ILGTQ---MERNIAKKLGLPCAVI 373 (525)
T ss_dssp EEECH---HHHHHHHHHTCCEEEC
T ss_pred EEecc---hhHHHHHHcCCCEEEe
Confidence 99875 4778899999999864
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.92 E-value=2e+02 Score=23.36 Aligned_cols=37 Identities=3% Similarity=-0.153 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHH-HHhcCCceEEEEEeCCCC
Q 039208 10 LFFNPSPGSSHLLSMDELGKL-ILTHYPYFSVTIIISTFP 48 (331)
Q Consensus 10 i~~~p~p~~gH~~p~~~la~~-L~~~G~~h~Vt~~~~~~~ 48 (331)
+++.--|+.|=..-.++++.. +.+.| ..|.+++.+..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~ 70 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEER 70 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCC
Confidence 566778899999999998865 45567 78888887644
No 228
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=22.89 E-value=2.1e+02 Score=25.56 Aligned_cols=74 Identities=9% Similarity=-0.081 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhc--CCceEEEEEeCCCCCCcc--------h--HHH---hhhHHH-HHHHHHh--h
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTH--YPYFSVTIIISTFPTLRG--------Q--LAL---LNSPNL-HKTLIIQ--S 70 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~--G~~h~Vt~~~~~~~~~~~--------p--~~~---~~~~~l-~~~l~~l--~ 70 (331)
.+++.--|+.|=..-.++++..++++ | ..|.|+.++...... + ++- .....+ .++++.+ +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g--~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPD--AVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTT--CEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCC--ceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 46777788999999999999998887 7 899999887654321 0 000 011111 1223333 3
Q ss_pred cCCCccEEEEcCcc
Q 039208 71 KTSNLKTLIIDFFH 84 (331)
Q Consensus 71 ~~~~~d~vI~D~~~ 84 (331)
++.++++||.|+..
T Consensus 108 ~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 108 ERGEKVVVFIDSLG 121 (333)
T ss_dssp CTTCCEEEEEECST
T ss_pred hccCceEEEEeccc
Confidence 55689999999744
No 229
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.60 E-value=3.1e+02 Score=22.31 Aligned_cols=69 Identities=12% Similarity=-0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCC-ccEEEEcCcc----hhHHHHHHHcCCCe
Q 039208 24 MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSN-LKTLIIDFFH----KVALQVSCSLNIPT 98 (331)
Q Consensus 24 ~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~-~d~vI~D~~~----~~~~~vA~~~giP~ 98 (331)
...+-+++.++| .++.+..+....+ .......++.++. .+ +|.||..... .-....+.+.|+|.
T Consensus 19 ~~gi~~~~~~~g--~~~~~~~~~~~~~----~~~~~~~i~~l~~-----~~~vdgii~~~~~~~~~~~~~~~~~~~~ipv 87 (276)
T 3ksm_A 19 YLGAQKAADEAG--VTLLHRSTKDDGD----IAGQIQILSYHLS-----QAPPDALILAPNSAEDLTPSVAQYRARNIPV 87 (276)
T ss_dssp HHHHHHHHHHHT--CEEEECCCSSTTC----HHHHHHHHHHHHH-----HSCCSEEEECCSSTTTTHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcC--CEEEEECCCCCCC----HHHHHHHHHHHHH-----hCCCCEEEEeCCCHHHHHHHHHHHHHCCCcE
Confidence 345667777889 9988765321111 1122223333332 25 9999987632 23445667789999
Q ss_pred EEEec
Q 039208 99 YLFYA 103 (331)
Q Consensus 99 v~~~~ 103 (331)
|.+..
T Consensus 88 V~~~~ 92 (276)
T 3ksm_A 88 LVVDS 92 (276)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 98753
No 230
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=22.25 E-value=84 Score=26.98 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCccEEEEcCcch------hHHHHHHHcCCCeEEEecc
Q 039208 63 HKTLIIQSKTSNLKTLIIDFFHK------VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~l~~l~~~~~~d~vI~D~~~~------~~~~vA~~~giP~v~~~~~ 104 (331)
..++.++++..+||+|+.-.... .+..+|..+|+|.+...+.
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34455554445799999765442 7889999999999987644
No 231
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.23 E-value=3.6e+02 Score=22.82 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=47.4
Q ss_pred ccEEEEEcCCCCC-CHHH-HHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcc
Q 039208 7 IIRLFFNPSPGSS-HLLS-MDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFH 84 (331)
Q Consensus 7 ~~~i~~~p~p~~g-H~~p-~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~ 84 (331)
+.+|.++..-... .+.- ...+-+++.++| .++.+..+... .......++.++. .++|.||.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~~~~~------~~~~~~~i~~~~~-----~~vdgiIi~~~~ 69 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAG--YKTDLQYADDD------IPNQLSQIENMVT-----KGVKVLVIASID 69 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTT--CEEEEEECTTC------HHHHHHHHHHHHH-----HTCSEEEECCSS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcC--CEEEEeeCCCC------HHHHHHHHHHHHH-----cCCCEEEEEcCC
Confidence 3456655433222 2222 334556777889 99988765311 1222233333332 379999987654
Q ss_pred h----hHHHHHHHcCCCeEEEec
Q 039208 85 K----VALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 85 ~----~~~~vA~~~giP~v~~~~ 103 (331)
. -....+.+.|||.|.+..
T Consensus 70 ~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 70 GTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp GGGGHHHHHHHHHTTCEEEEESS
T ss_pred chhHHHHHHHHHHCCCCEEEECC
Confidence 2 234566778999998754
No 232
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=22.17 E-value=1.6e+02 Score=28.21 Aligned_cols=75 Identities=9% Similarity=0.013 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEE-EEcCcchhHHHHHHHcCCCe
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTL-IIDFFHKVALQVSCSLNIPT 98 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~v-I~D~~~~~~~~vA~~~giP~ 98 (331)
++..|..+++.|.++| ++|+++......+. ......+..++++. +++.| +.++........-+++||+.
T Consensus 65 l~saMr~fa~~L~~~G--~~v~y~~~~~~~~~----g~~~~~L~~l~~~~----~~~~v~~~~P~e~r~~~~l~~~gi~v 134 (522)
T 3zxs_A 65 ILAAMRKFARRLQERG--FRVAYSRLDDPDTG----PSIGAELLRRAAET----GAREAVATRPGDWRLIEALEAMPLPV 134 (522)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEEECTTCTTCC----SSHHHHHHHHHHHH----TCCCEEEECCSCHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCC--CeEEEEeccCcccc----CCHHHHHHHHHHHc----CCCEEEEeCcchHHHHHHHHHcCCcE
Confidence 4567999999999999 99999875433221 01122333333332 44433 44554443333334568888
Q ss_pred EEEecc
Q 039208 99 YLFYAS 104 (331)
Q Consensus 99 v~~~~~ 104 (331)
..+...
T Consensus 135 ~~~~~~ 140 (522)
T 3zxs_A 135 RFLPDD 140 (522)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 776643
No 233
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.15 E-value=2e+02 Score=19.77 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--hHHHHHHH----
Q 039208 20 HLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK--VALQVSCS---- 93 (331)
Q Consensus 20 H~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~--~~~~vA~~---- 93 (331)
|-.-...+...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|...+ -+..+.++
T Consensus 10 ~~~~~~~l~~~l~~~~--~~v~~~~~---------~-------~~a~~~~-~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 10 EPNIRELLKEELQEEG--YEIDTAEN---------G-------EEALKKF-FSGNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CHHHHHHHHHHHHHTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CEEEEeCC---------H-------HHHHHHH-hcCCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 4445566777888889 98875432 1 1122222 224799999998654 23433332
Q ss_pred -cCCCeEEEecc
Q 039208 94 -LNIPTYLFYAS 104 (331)
Q Consensus 94 -~giP~v~~~~~ 104 (331)
-++|.+.++..
T Consensus 71 ~~~~~ii~~s~~ 82 (116)
T 3a10_A 71 KKDAKIILLTAY 82 (116)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCeEEEEECC
Confidence 25787777654
No 234
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.95 E-value=3e+02 Score=21.79 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=45.1
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCce-EEEEEeCCCCCCcchHHHhhhHHHHHHHH-----HhhcCCCccEEEE
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYF-SVTIIISTFPTLRGQLALLNSPNLHKTLI-----IQSKTSNLKTLII 80 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h-~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~-----~l~~~~~~d~vI~ 80 (331)
..+|+++- .+-.-...|...|.+.| + +|..+.+ ...+...++.... ......+||+||.
T Consensus 61 ~~~ILiVd----Dd~~~~~~l~~~L~~~g--~~~v~~a~~---------~~eal~~l~~~~~~~~~~~~~~~~~~dlill 125 (206)
T 3mm4_A 61 GKRVLVVD----DNFISRKVATGKLKKMG--VSEVEQCDS---------GKEALRLVTEGLTQREEQGSVDKLPFDYIFM 125 (206)
T ss_dssp TCEEEEEC----SCHHHHHHHHHHHHHTT--CSEEEEESS---------HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEE
T ss_pred CCEEEEEe----CCHHHHHHHHHHHHHcC--CCeeeeeCC---------HHHHHHHHHhhcccccccccccCCCCCEEEE
Confidence 34666654 34444556677777778 7 6665433 1222222222110 0112347999999
Q ss_pred cCcch--hHHHHHHH---------cCCCeEEEeccc
Q 039208 81 DFFHK--VALQVSCS---------LNIPTYLFYASS 105 (331)
Q Consensus 81 D~~~~--~~~~vA~~---------~giP~v~~~~~~ 105 (331)
|...+ -+..++++ .++|.+.++...
T Consensus 126 D~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 126 DCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp ESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred cCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 98664 23333332 468888887654
No 235
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=21.84 E-value=1.8e+02 Score=25.79 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCC--C--HHHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-hHHHh---------hhHHHHHHHHHhhcCC
Q 039208 8 IRLFFNPSPGSS--H--LLSMDELGKLILTHYPYFSVTIIISTFPTLRG-QLALL---------NSPNLHKTLIIQSKTS 73 (331)
Q Consensus 8 ~~i~~~p~p~~g--H--~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~-p~~~~---------~~~~l~~~l~~l~~~~ 73 (331)
.-|++.|..+.. . .--+.+|++.|.++| .+|.++..+.-.... .+... ..-.+.++..-+ +
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g--~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali-~-- 260 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGRLG--YKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAM-N-- 260 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHT--CEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHH-H--
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCC--CeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHH-H--
Confidence 346677765433 1 335899999999999 998775432111000 01000 012233333222 2
Q ss_pred CccEEEE-cCcchhHHHHHHHcCCCeEEEecc
Q 039208 74 NLKTLII-DFFHKVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 74 ~~d~vI~-D~~~~~~~~vA~~~giP~v~~~~~ 104 (331)
+.|++|+ |. ....+|..+|+|.+.++..
T Consensus 261 ~a~~~i~~Ds---G~~HlAaa~g~P~v~lfg~ 289 (349)
T 3tov_A 261 RCNLLITNDS---GPMHVGISQGVPIVALYGP 289 (349)
T ss_dssp TCSEEEEESS---HHHHHHHTTTCCEEEECSS
T ss_pred hCCEEEECCC---CHHHHHHhcCCCEEEEECC
Confidence 5688886 43 4678899999999998754
No 236
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=21.73 E-value=99 Score=25.75 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHHHhhcC---CCccEEEEcCcchhHHHHHHHcCCCeEEEecc
Q 039208 62 LHKTLIIQSKT---SNLKTLIIDFFHKVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 62 l~~~l~~l~~~---~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~~ 104 (331)
++.++++..+. ..+.+||+|--.......|+++|||+..+.+.
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~ 61 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPK 61 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGG
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChh
Confidence 45555544221 25778888865556778999999999877543
No 237
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=21.60 E-value=2.1e+02 Score=19.88 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
.+|+++- .|-.-...+...|.+.| ++|..+.+ . .+.++.+ +..+||+||.|...+
T Consensus 4 ~~ilivd----d~~~~~~~l~~~l~~~~--~~v~~~~~---------~-------~~a~~~~-~~~~~dlvi~D~~l~~~ 60 (123)
T 1xhf_A 4 PHILIVE----DELVTRNTLKSIFEAEG--YDVFEATD---------G-------AEMHQIL-SEYDINLVIMDINLPGK 60 (123)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTT--CEEEEESS---------H-------HHHHHHH-HHSCCSEEEECSSCSSS
T ss_pred ceEEEEe----CCHHHHHHHHHHHhhCC--cEEEEeCC---------H-------HHHHHHH-hcCCCCEEEEcCCCCCC
Confidence 4666654 34444556777788889 88764432 1 1122111 224799999998654
Q ss_pred hHHHHHHH----cCCCeEEEeccc
Q 039208 86 VALQVSCS----LNIPTYLFYASS 105 (331)
Q Consensus 86 ~~~~vA~~----~giP~v~~~~~~ 105 (331)
-+..+.++ .++|.+.++...
T Consensus 61 ~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 61 NGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp CHHHHHHHHHHHCCCEEEEEESCC
T ss_pred CHHHHHHHHHhCCCCcEEEEECCC
Confidence 23444433 367777776543
No 238
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=21.48 E-value=1.2e+02 Score=25.26 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=36.2
Q ss_pred cEEEEEcCCCC-C-CHHHHHHHHHHHHhc--CCce-EEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEc
Q 039208 8 IRLFFNPSPGS-S-HLLSMDELGKLILTH--YPYF-SVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIID 81 (331)
Q Consensus 8 ~~i~~~p~p~~-g-H~~p~~~la~~L~~~--G~~h-~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D 81 (331)
.+|++.-|.-+ | -+||...++++|... | + +|....- +. .+......+.+++++. +||+||+=
T Consensus 2 ~~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~~--~~~i~~~~l--Pv----~y~~~~~~l~~~~~~~----~Pd~Vihv 68 (215)
T 3lac_A 2 KTVLLTGFDPFGGESINPAWEVAKSLHEKTIG--EYKIISKQV--PT----VFHKSISVLKEYIEEL----APEFIICI 68 (215)
T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHTTTTCEET--TEEEEEEEE--CS----STTHHHHHHHHHHHHH----CCSEEEEE
T ss_pred CEEEEEecCCCCCCCCChHHHHHHHhccccCC--CcEEEEEEE--ee----EhHHHHHHHHHHHHhh----CCCeEEEe
Confidence 46776665433 3 389999999999873 4 4 4432211 11 1333444555555543 89988853
No 239
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.27 E-value=3.3e+02 Score=23.21 Aligned_cols=66 Identities=3% Similarity=-0.109 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCC--ccEEEEcCcchh----HHHHHHHcCCCe
Q 039208 25 DELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSN--LKTLIIDFFHKV----ALQVSCSLNIPT 98 (331)
Q Consensus 25 ~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~--~d~vI~D~~~~~----~~~vA~~~giP~ 98 (331)
..+-+++.++| .++.+..+.. + ...... .++.+.. .+ +|.||.-....- ....+.+.|+|.
T Consensus 25 ~gi~~~a~~~g--~~l~~~~~~~--~----~~~~~~----~i~~l~~-~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPv 91 (332)
T 2rjo_A 25 KGAQSFAKSVG--LPYVPLTTEG--S----SEKGIA----DIRALLQ-KTGGNLVLNVDPNDSADARVIVEACSKAGAYV 91 (332)
T ss_dssp HHHHHHHHHHT--CCEEEEECTT--C----HHHHHH----HHHHHHH-HTTTCEEEEECCSSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcC--CEEEEecCCC--C----HHHHHH----HHHHHHH-CCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeE
Confidence 44556777889 9988765431 1 111122 2333322 26 999887654331 233455679999
Q ss_pred EEEec
Q 039208 99 YLFYA 103 (331)
Q Consensus 99 v~~~~ 103 (331)
|.+..
T Consensus 92 V~~~~ 96 (332)
T 2rjo_A 92 TTIWN 96 (332)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 88754
No 240
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=21.16 E-value=91 Score=27.65 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 7 IIRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 7 ~~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+|||+|+-.|-.+- +.-++|.++| |+|..+.+.
T Consensus 2 ~mrivf~Gtp~fa~-----~~L~~L~~~~--~~v~~Vvt~ 34 (314)
T 3tqq_A 2 SLKIVFAGTPQFAV-----PTLRALIDSS--HRVLAVYTQ 34 (314)
T ss_dssp CCEEEEEECSGGGH-----HHHHHHHHSS--SEEEEEECC
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCC--CeEEEEEeC
Confidence 47999998886553 3346788889 998777663
No 241
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.83 E-value=67 Score=27.05 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 61 NLHKTLIIQSKTSNLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 61 ~l~~~l~~l~~~~~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
..+..++++ +...+++||.|.. ...+|+++|+|.+.+.+
T Consensus 142 e~~~~i~~l-~~~G~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 142 DARGQINEL-KANGTEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHH-HHTTCCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHH-HHCCCCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 334445544 3468999999864 67999999999999873
No 242
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=20.80 E-value=88 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=20.4
Q ss_pred CccEEEEcCcchhHHHHHHHcCCCeEEEec
Q 039208 74 NLKTLIIDFFHKVALQVSCSLNIPTYLFYA 103 (331)
Q Consensus 74 ~~d~vI~D~~~~~~~~vA~~~giP~v~~~~ 103 (331)
.+.+||+|.-...+...|+++|||+..+..
T Consensus 37 ~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 37 VISCVISNNAEARGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCB
T ss_pred EEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 456667764333456788999999887643
No 243
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=20.74 E-value=82 Score=26.95 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCccEEEEcCcc------hhHHHHHHHcCCCeEEEecc
Q 039208 63 HKTLIIQSKTSNLKTLIIDFFH------KVALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 63 ~~~l~~l~~~~~~d~vI~D~~~------~~~~~vA~~~giP~v~~~~~ 104 (331)
..++.++++..+||+|+.-... -.+..+|+++|+|.+...+.
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 3344444443479999876544 27889999999999987644
No 244
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=20.59 E-value=88 Score=22.05 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.6
Q ss_pred hcCCChHHHHHHHHHH
Q 039208 313 SEGGRSLAVVAELAES 328 (331)
Q Consensus 313 ~~ggss~~~l~~~v~~ 328 (331)
+.+|||...+.++|+.
T Consensus 23 er~GsS~~AIkKyI~~ 38 (88)
T 1uss_A 23 DGKGSSRIVLKKYVKD 38 (88)
T ss_dssp CTTSBCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5789999999998864
No 245
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=20.59 E-value=89 Score=26.92 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCC
Q 039208 9 RLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIIST 46 (331)
Q Consensus 9 ~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~ 46 (331)
+|+++ ++.|.+ -..++++|+++| |+|+.++-.
T Consensus 13 ~ilVt--GatG~i--G~~l~~~L~~~g--~~V~~l~R~ 44 (318)
T 2r6j_A 13 KILIF--GGTGYI--GNHMVKGSLKLG--HPTYVFTRP 44 (318)
T ss_dssp CEEEE--TTTSTT--HHHHHHHHHHTT--CCEEEEECT
T ss_pred eEEEE--CCCchH--HHHHHHHHHHCC--CcEEEEECC
Confidence 55555 445554 357889999999 999887643
No 246
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.44 E-value=3.6e+02 Score=22.13 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCce--EEEEEeCCCCCCcc---------hHH--Hh----hhHHHHHHHHHhh
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYF--SVTIIISTFPTLRG---------QLA--LL----NSPNLHKTLIIQS 70 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h--~Vt~~~~~~~~~~~---------p~~--~~----~~~~l~~~l~~l~ 70 (331)
+||+|+-++. |+ -+..+.++|.+.+ | +|..+.+....... |.+ .. ....+.+.+.+.+
T Consensus 2 ~rI~vl~SG~-g~--~~~~~l~~l~~~~--~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l 76 (216)
T 2ywr_A 2 LKIGVLVSGR-GS--NLQAIIDAIESGK--VNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALEL 76 (216)
T ss_dssp EEEEEEECSC-CH--HHHHHHHHHHTTS--SCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CEEEEEEeCC-cH--HHHHHHHHHHhCC--CCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH
Confidence 5888887654 33 3666777888877 7 87766654322211 211 00 0111222222223
Q ss_pred cCCCccEEEEcCcch-hHHHHHHHcCCCeEEEecc
Q 039208 71 KTSNLKTLIIDFFHK-VALQVSCSLNIPTYLFYAS 104 (331)
Q Consensus 71 ~~~~~d~vI~D~~~~-~~~~vA~~~giP~v~~~~~ 104 (331)
++.++|+||.=.+.. -...+-+.+...++-++++
T Consensus 77 ~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 77 KKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp HHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred HhcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 455899998765532 3334445555567777666
No 247
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.19 E-value=3.3e+02 Score=21.62 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEEEEeCCCCCCcchHHHhhhHHHHHHHHHhhcCCCccEEEEcCcch--
Q 039208 8 IRLFFNPSPGSSHLLSMDELGKLILTHYPYFSVTIIISTFPTLRGQLALLNSPNLHKTLIIQSKTSNLKTLIIDFFHK-- 85 (331)
Q Consensus 8 ~~i~~~p~p~~gH~~p~~~la~~L~~~G~~h~Vt~~~~~~~~~~~p~~~~~~~~l~~~l~~l~~~~~~d~vI~D~~~~-- 85 (331)
++|+++- .|-.-...|...|.+.| ++|..+.+ ...+ + +.+.. .+||+||.|...+
T Consensus 5 ~~ilivd----d~~~~~~~l~~~L~~~g--~~v~~~~~---------~~~a---l-~~~~~----~~~dlvllD~~l~~~ 61 (230)
T 2oqr_A 5 TSVLIVE----DEESLADPLAFLLRKEG--FEATVVTD---------GPAA---L-AEFDR----AGADIVLLDLMLPGM 61 (230)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTT--CEEEEECS---------HHHH---H-HHHHH----HCCSEEEEESSCSSS
T ss_pred CeEEEEe----CCHHHHHHHHHHHHHCC--CEEEEECC---------HHHH---H-HHHhc----cCCCEEEEECCCCCC
Confidence 4677664 45566677888888889 99875433 1111 1 12222 3799999997654
Q ss_pred hHHHHHHH----cCCCeEEEecccH
Q 039208 86 VALQVSCS----LNIPTYLFYASSA 106 (331)
Q Consensus 86 ~~~~vA~~----~giP~v~~~~~~~ 106 (331)
-+..+.++ -++|.+.++....
T Consensus 62 ~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 62 SGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp CHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred CHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 23333333 4788888776543
Done!