Your job contains 1 sequence.
>039210
SHRREKNQSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSA
GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC
HGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEAR
KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS
RDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSD
APTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS
AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL
QPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV
TWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESV
KIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQL
RSEFLGESSTSI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039210
(612 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099555 - symbol:PHS1 "AT3G47390" species:3702... 2133 6.9e-221 1
TIGR_CMR|GSU_1688 - symbol:GSU_1688 "riboflavin biosynthe... 294 1.2e-47 3
TIGR_CMR|CHY_1475 - symbol:CHY_1475 "riboflavin biosynthe... 308 4.4e-46 2
TIGR_CMR|DET_1190 - symbol:DET_1190 "riboflavin biosynthe... 396 1.4e-36 1
TIGR_CMR|SPO_1754 - symbol:SPO_1754 "riboflavin biosynthe... 214 6.4e-29 2
UNIPROTKB|P30176 - symbol:ybiA "conserved protein" specie... 296 1.8e-25 1
TIGR_CMR|SO_3469 - symbol:SO_3469 "riboflavin biosynthesi... 202 5.5e-25 2
UNIPROTKB|Q721R6 - symbol:LMOf2365_0919 "Putative unchara... 285 2.9e-24 1
UNIPROTKB|P71677 - symbol:ribD "Riboflavin biosynthesis p... 140 1.3e-23 3
TIGR_CMR|BA_4331 - symbol:BA_4331 "riboflavin biosynthesi... 262 1.3e-20 1
UNIPROTKB|Q58085 - symbol:arfC "2,5-diamino-6-ribosylamin... 240 2.2e-19 1
TIGR_CMR|CBU_0643 - symbol:CBU_0643 "riboflavin biosynthe... 167 2.7e-19 2
TIGR_CMR|CPS_0730 - symbol:CPS_0730 "riboflavin biosynthe... 240 1.4e-17 1
UNIPROTKB|O66747 - symbol:ribD2 "2,5-diamino-6-ribosylami... 221 2.5e-17 1
UNIPROTKB|Q0C0I7 - symbol:HNE_2058 "Riboflavin biosynthes... 220 3.2e-17 1
DICTYBASE|DDB_G0281625 - symbol:DDB_G0281625 "unknown" sp... 212 2.3e-16 1
TAIR|locus:2133074 - symbol:PyrD "pyrimidine deaminase" s... 182 5.4e-15 2
UNIPROTKB|Q9KPU1 - symbol:VC_2271 "Riboflavin-specific de... 205 1.2e-13 1
TIGR_CMR|VC_2271 - symbol:VC_2271 "riboflavin biosynthesi... 205 1.2e-13 1
UNIPROTKB|P25539 - symbol:ribD "fused diaminohydroxyphosp... 187 1.3e-11 1
TIGR_CMR|APH_0037 - symbol:APH_0037 "riboflavin biosynthe... 180 7.9e-11 1
TIGR_CMR|NSE_0499 - symbol:NSE_0499 "riboflavin biosynthe... 175 3.0e-10 1
TIGR_CMR|ECH_0169 - symbol:ECH_0169 "riboflavin biosynthe... 170 1.0e-09 1
UNIPROTKB|Q0C679 - symbol:HNE_0030 "Riboflavin biosynthes... 150 1.1e-09 1
UNIPROTKB|Q4K4F4 - symbol:PFL_5821 "Uncharacterized prote... 149 1.4e-09 1
WB|WBGene00007440 - symbol:C08E8.4 species:6239 "Caenorha... 151 3.5e-09 1
WB|WBGene00015574 - symbol:irg-1 species:6239 "Caenorhabd... 131 4.1e-06 1
>TAIR|locus:2099555 [details] [associations]
symbol:PHS1 "AT3G47390" species:3702 "Arabidopsis
thaliana" [GO:0008270 "zinc ion binding" evidence=ISS] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil
reductase activity" evidence=IDA;NAS] [GO:0009644 "response to high
light intensity" evidence=IMP] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0046443 "FAD metabolic process"
evidence=IMP] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 InterPro:IPR024072 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050661 GO:GO:0008270 GO:GO:0009658
SUPFAM:SSF53927 GO:GO:0009644 GO:GO:0009231 EMBL:AL096860
Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 TIGRFAMs:TIGR00326 GO:GO:0046443 eggNOG:COG3236
InterPro:IPR012816 Pfam:PF08719 TIGRFAMs:TIGR02464
HOGENOM:HOG000257443 IPI:IPI00548640 PIR:T12994 RefSeq:NP_190323.1
UniGene:At.53819 ProteinModelPortal:Q9STY4 SMR:Q9STY4 STRING:Q9STY4
PaxDb:Q9STY4 PRIDE:Q9STY4 EnsemblPlants:AT3G47390.1 GeneID:823893
KEGG:ath:AT3G47390 TAIR:At3g47390 InParanoid:Q9STY4 OMA:MSEAPRL
PhylomeDB:Q9STY4 ProtClustDB:CLSN2685169 ArrayExpress:Q9STY4
Genevestigator:Q9STY4 Uniprot:Q9STY4
Length = 599
Score = 2133 (755.9 bits), Expect = 6.9e-221, P = 6.9e-221
Identities = 420/560 (75%), Positives = 472/560 (84%)
Query: 59 SAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPG 118
SAG TSPHPNFGC+IATS+GKVAGEGYLYAQGTKPAE AVEA G F RGATAYLNMEPG
Sbjct: 46 SAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPG 105
Query: 119 DCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
DCHGDHTAVSALVQAGI RVVVGIR+PLQHLRG A+R LRS G++V+VLGED +SK++E+
Sbjct: 106 DCHGDHTAVSALVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLED 165
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
ARKSCLLVNAPLIHRA SRVPFSV KYAMTLD GKIAASSGHAAWISSK
Sbjct: 166 ARKSCLLVNAPLIHRACSRVPFSVLKYAMTLD------------GKIAASSGHAAWISSK 213
Query: 239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV 298
SR RVF+LRG SDAV+VGGNTVR+D+PRLTARHG GHTP RIV+TQ+L+LPE+ANLWDV
Sbjct: 214 LSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQGHTPTRIVMTQSLDLPEKANLWDV 273
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLA 358
S+ TIVVTQRGAR+ FQK LAS+GVEVVEFD+LN R+VMEYFH RGYLSILWECGGTLA
Sbjct: 274 SEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWECGGTLA 333
Query: 359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
ASAISS +IHKV AFVAPKIIGG AP+PV +LGMVEM+QAL+LID+CYEQVGPDML+SG
Sbjct: 334 ASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLVSG 393
Query: 419 FLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNG 478
FLQPIPDL+PVIPSED T IDP+V P+EPSII+FYKTWD YG + N + V
Sbjct: 394 FLQPIPDLLPVIPSEDATVEIDPSVDPFEPSIIFFYKTWDLYGMW-NITIRYHTTVHVKW 452
Query: 479 DVTWSS-----VEH--YYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPD 531
+ S + H +A+KF GV +P A D VEKI+TA+SPEEAA +GRS RQ P+
Sbjct: 453 YLALSKKHNLLILHPKTLKANKFVGVENPKAYDCVEKIRTARSPEEAALIGRSTLRQKPE 512
Query: 532 WVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLN 591
VR+DWE VKI++MY+ALKCKFS YPHL SMLLST G+VLVEASPHDLFWGGGREGEGLN
Sbjct: 513 LVRNDWEDVKIEVMYKALKCKFSTYPHLKSMLLSTIGTVLVEASPHDLFWGGGREGEGLN 572
Query: 592 YLGRLLMQLRSEFLGESSTS 611
YLGRLLMQLRSE+LGESS S
Sbjct: 573 YLGRLLMQLRSEYLGESSVS 592
>TIGR_CMR|GSU_1688 [details] [associations]
symbol:GSU_1688 "riboflavin biosynthesis protein RibD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_952739.1
ProteinModelPortal:Q74CI5 GeneID:2685605 KEGG:gsu:GSU1688
PATRIC:22026225 ProtClustDB:CLSK828486
BioCyc:GSUL243231:GH27-1709-MONOMER Uniprot:Q74CI5
Length = 369
Score = 294 (108.6 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 79/244 (32%), Positives = 120/244 (49%)
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
K C L+N P + ++ +PF K A+TLD GK A + G + WI++ S
Sbjct: 131 KECRLINEPFVKHVSTGLPFLTLKSALTLD------------GKTATALGDSRWITNDKS 178
Query: 241 RDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEAN-LWDVS 299
R V LR DAV+VG T+ DNP LT RH G P+RI++ +L +P E+ L D
Sbjct: 179 RRYVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDL 238
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEYFHDRGYLSILWECGG 355
TI+ T + + +L +RG +V+ + ++ RD+M+ +G SIL E G
Sbjct: 239 ARGTIIATTSDDQERIG-FLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGS 297
Query: 356 TLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDML 415
LA +A+ GLI K F AP ++GG + M +A L + G D++
Sbjct: 298 ELAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVM 357
Query: 416 ISGF 419
I +
Sbjct: 358 IEAY 361
Score = 217 (81.4 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 58/156 (37%), Positives = 81/156 (51%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
K G TSP+P GC+I G V GEG+ GT AEV A+ G RGA Y+ +EP
Sbjct: 18 KGIGKTSPNPVVGCVIVRE-GVVVGEGWHRKAGTPHAEVHALREAGPLARGADVYVTLEP 76
Query: 118 GDC-HGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSK 174
C H T ALV AG+ RV VG+ +P + G+ + L + G+QV + G
Sbjct: 77 --CSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQV-ITG------ 127
Query: 175 IIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
++ K C L+N P + ++ +PF K A+TLD
Sbjct: 128 VLG---KECRLINEPFVKHVSTGLPFLTLKSALTLD 160
Score = 37 (18.1 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 567 GGSVLVEASPHD 578
GG V++EA P +
Sbjct: 353 GGDVMIEAYPEE 364
>TIGR_CMR|CHY_1475 [details] [associations]
symbol:CHY_1475 "riboflavin biosynthesis protein RibD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_360307.1 ProteinModelPortal:Q3AC27 STRING:Q3AC27
GeneID:3726293 KEGG:chy:CHY_1475 PATRIC:21276081 OMA:WYGRNPV
BioCyc:CHYD246194:GJCN-1474-MONOMER Uniprot:Q3AC27
Length = 361
Score = 308 (113.5 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 78/214 (36%), Positives = 118/214 (55%)
Query: 213 LPGV-LSWMLT--GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 269
LP + L W +T GKIA + + W+S + SR V LR DAV+VG T+ DNP LT
Sbjct: 147 LPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVHRLRNEYDAVLVGAKTLIIDNPLLT 206
Query: 270 ARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF 329
R G P RIVL+ + NLPE N++ + I++T A +K K++++ ++
Sbjct: 207 CRIPQGRNPYRIVLSGSGNLPEGLNIFQLEKEKNILIT---ASKKLPKHVSNGFGHIITT 263
Query: 330 DILNSR-DVMEYFHDR---GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
+ +R ++ E F + G +SIL E G + AS + + L K + F+APKI+GGKNAP
Sbjct: 264 PLGENRINIKEAFLELSRLGIISILVEGGAVVHASLLQNRLADKAYIFIAPKIVGGKNAP 323
Query: 386 TPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
P+ +L + M AL L + G D+ I G+
Sbjct: 324 GPIGDLKISLMKDALPLAIHKLRRFGEDVFIEGY 357
Score = 206 (77.6 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 51/155 (32%), Positives = 80/155 (51%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
++ G TSP+P G +I G + GEGY G AE +A++ G RG T Y+ +EP
Sbjct: 16 RALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGEKARGGTMYVTLEP 75
Query: 118 GDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175
CH T A++ AGI +VVV +R+P + G+ + LR+ G++V ++ +
Sbjct: 76 C-CHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIEV------VEGVL 128
Query: 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
EEA +N + +PF K+AMT+D
Sbjct: 129 AEEA----FYLNEKFFKFIKTGLPFISLKWAMTVD 159
>TIGR_CMR|DET_1190 [details] [associations]
symbol:DET_1190 "riboflavin biosynthesis protein RibD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_181903.1 ProteinModelPortal:Q3Z796 STRING:Q3Z796
GeneID:3229533 KEGG:det:DET1190 PATRIC:21609415
ProtClustDB:CLSK837091 BioCyc:DETH243164:GJNF-1191-MONOMER
Uniprot:Q3Z796
Length = 365
Score = 396 (144.5 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 119/374 (31%), Positives = 185/374 (49%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G SP+P G +I + G+V G+G+ G AE+ A++ +GA Y+ +EP C
Sbjct: 16 GQVSPNPAVGAVIVKN-GEVVGQGFTQPPGGDHAEIVALKQAAEKAKGAALYVTLEPC-C 73
Query: 121 HGDHT--AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQGLQVHVLGEDLQSKII 176
H T A++++GI V + NPL + G+ + L G++VH LG +
Sbjct: 74 HQGRTPPCTVAIIESGIKEVYIATLDDNPL--VSGKGKKELEDAGIKVH-LG-----MME 125
Query: 177 EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWIS 236
EAR+ +N T+ +PF KYAM+LD GK +G + WIS
Sbjct: 126 REARQ----MNEAYFKYITTGMPFVTAKYAMSLD------------GKTGTRTGDSKWIS 169
Query: 237 SKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----HGG-GHT-PMRIVLTQTLNLP 290
++ SR +R SD ++ G NT+ +D+P LTAR GG H P R+++ P
Sbjct: 170 NEESRHFAHYIRHISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAP 229
Query: 291 EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEYFHDRGY 346
+N++ V TIV +G + ++ G +VVE +++ + ++ Y G
Sbjct: 230 LSSNVFHVP-GNTIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGV 288
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
S+L E GG + S L+ KV FVAP IIGGK+A PV+ LG ++ + L DI
Sbjct: 289 TSVLVEGGGIVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDIT 348
Query: 407 YEQVGPDMLISGFL 420
G D+LISG++
Sbjct: 349 TTAFGQDVLISGYV 362
>TIGR_CMR|SPO_1754 [details] [associations]
symbol:SPO_1754 "riboflavin biosynthesis protein RibD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_166992.1
ProteinModelPortal:Q5LSL3 GeneID:3193058 KEGG:sil:SPO1754
PATRIC:23376831 ProtClustDB:CLSK2767255 Uniprot:Q5LSL3
Length = 364
Score = 214 (80.4 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 61/201 (30%), Positives = 105/201 (52%)
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRI 281
G+IA +SG + WI+ +R V +R R DAV+VG T R D+P LT R G P+R+
Sbjct: 161 GRIATASGESQWITGPEARRAVHAMRARHDAVLVGAGTARSDDPSLTVRDMGVAQQPVRV 220
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGA---RRKFQKYLASRGVE-VVEFDILNSRD 336
V+++ L+LP + L + P + G R + + +R + VE +++ D
Sbjct: 221 VVSRYLDLPLMSQLARTARQVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATD 280
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ +G + E G +LAAS +++ ++ ++ F A IG + P V LG+ ++
Sbjct: 281 LLRQLGGQGLTRVFCEGGASLAASLLAADMVDELVGFTAGLAIGAEGLPA-VGVLGLEQL 339
Query: 397 SQA--LDLIDICYEQVGPDML 415
S+A DLI+ +G D+L
Sbjct: 340 SEAARFDLIET--RAIGADIL 358
Score = 176 (67.0 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 42/119 (35%), Positives = 60/119 (50%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
+ G P+P GC+I G++ G G+ G AEV A+ G RGATAY+ +EP
Sbjct: 18 RGQGVCWPNPAVGCVIVNE-GRIVGRGWTQPGGRPHAEVVALAQAGGAARGATAYVTLEP 76
Query: 118 GDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV-LGEDLQSK 174
HG AL+ AG+ RVV I + + G LR G++V V +GED ++
Sbjct: 77 CAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRAGIEVSVGIGEDAAAR 135
>UNIPROTKB|P30176 [details] [associations]
symbol:ybiA "conserved protein" species:83333 "Escherichia
coli K-12" [GO:0006928 "cellular component movement" evidence=IMP]
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006928 EMBL:L02123 PIR:F64816
RefSeq:NP_415319.1 RefSeq:YP_489071.1 PDB:2B3W PDBsum:2B3W
ProteinModelPortal:P30176 SMR:P30176 DIP:DIP-11424N IntAct:P30176
PRIDE:P30176 EnsemblBacteria:EBESCT00000001627
EnsemblBacteria:EBESCT00000016786 GeneID:12930969 GeneID:945426
KEGG:ecj:Y75_p0771 KEGG:eco:b0798 PATRIC:32116799 EchoBASE:EB1539
EcoGene:EG11579 eggNOG:COG3236 HOGENOM:HOG000270609 KO:K09935
OMA:NFSPHGF ProtClustDB:CLSK891722 BioCyc:EcoCyc:EG11579-MONOMER
BioCyc:ECOL316407:JW0783-MONOMER EvolutionaryTrace:P30176
Genevestigator:P30176 InterPro:IPR012816 Pfam:PF08719
TIGRFAMs:TIGR02464 Uniprot:P30176
Length = 160
Score = 296 (109.3 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 68/157 (43%), Positives = 96/157 (61%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAAWPIK---VDGK-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR R P +R +WESVK +M +AL+ KF + L ++LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRD--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRALLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
+ LVE + +D +WG G G+G N LG LLM+LR +
Sbjct: 119 APAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQ 155
>TIGR_CMR|SO_3469 [details] [associations]
symbol:SO_3469 "riboflavin biosynthesis protein RibD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 HSSP:Q12178 RefSeq:NP_719018.1
ProteinModelPortal:Q8EBP0 GeneID:1171145 KEGG:son:SO_3469
PATRIC:23526634 OMA:PDYQTMA ProtClustDB:CLSK907182 Uniprot:Q8EBP0
Length = 381
Score = 202 (76.2 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 57/169 (33%), Positives = 83/169 (49%)
Query: 61 GF--TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPG 118
GF T P+P+ GC+I ++ GEGY G AEV A+ G RGATAY+ +EP
Sbjct: 21 GFYTTRPNPSVGCVIVNDN-QIVGEGYHQKAGEPHAEVHALRMAGELARGATAYVTLEPC 79
Query: 119 DCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
+G + AL+ G+ RVVV + +P + G+ ++ LR G+QV V L
Sbjct: 80 SHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVDV---GLH----- 131
Query: 178 EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD---VILPGVLSWMLTG 223
R +N + R S +P+ K A +LD + GV W +TG
Sbjct: 132 --RDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKW-ITG 177
Score = 154 (59.3 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 62/226 (27%), Positives = 102/226 (45%)
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-G 275
L+ L GK A S+G + WI+ +R V LR RS A++ G TV D+P L R+ G
Sbjct: 157 LAASLDGKTALSNGVSKWITGPEARRDVQRLRLRSCALITGIETVLADDPSLNVRYSELG 216
Query: 276 HT-----------PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV 324
P+R+VL +P A L+ + ++P ++V+ F L + V
Sbjct: 217 SLRAQLSESQVLQPLRVVLDSRARMPITAALFAI-ESPILLVSTVSYSSDFMVQLPAH-V 274
Query: 325 EVVEFDILNSR---DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
++ + R + + + +L E G TLA + I SGL ++ + A KI+GG
Sbjct: 275 TCLQLPAIEGRISLSALLSYLGKSCNQVLIEAGATLAGAFIGSGLADELVLYQAMKILGG 334
Query: 382 KNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDL 426
+ + + M+ L L+D +VG D + L+ P L
Sbjct: 335 QGRNLLELPDYQMMADIPTLKLVD--ERKVGADTRFTLRLESNPSL 378
>UNIPROTKB|Q721R6 [details] [associations]
symbol:LMOf2365_0919 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG3236
HOGENOM:HOG000270609 KO:K09935 OMA:NFSPHGF InterPro:IPR012816
Pfam:PF08719 TIGRFAMs:TIGR02464 RefSeq:YP_013521.1
ProteinModelPortal:Q721R6 SMR:Q721R6 STRING:Q721R6 GeneID:2799001
KEGG:lmf:LMOf2365_0919 PATRIC:20323058 ProtClustDB:CLSK926827
Uniprot:Q721R6
Length = 146
Score = 285 (105.4 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 61/155 (39%), Positives = 97/155 (62%)
Query: 450 IIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKI 509
+I+FY YG FSNFS HPI ++G VT+ + EHY+QA KF + ++K+
Sbjct: 3 VIHFYSENADYGCFSNFSLHPIV---IDG-VTYPTTEHYFQAQKFID------KKIIKKV 52
Query: 510 KTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGS 569
K P +AA+LGR+ R P +R WES+K ++M +A++ K + + + MLL+T +
Sbjct: 53 INTKKPIDAAKLGRN--RDFP--LRKGWESMKDEVMLKAIRAKVAQHSEVKEMLLTTENA 108
Query: 570 VLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
+LVE + +D +WG G +G G N LG++LM++R E+
Sbjct: 109 ILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDEW 143
>UNIPROTKB|P71677 [details] [associations]
symbol:ribD "Riboflavin biosynthesis protein RibD"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002125
InterPro:IPR002734 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842576 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835
GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752 TIGRFAMs:TIGR00326
PIR:F70901 RefSeq:NP_215925.1 RefSeq:NP_335904.1
RefSeq:YP_006514789.1 ProteinModelPortal:P71677 SMR:P71677
PRIDE:P71677 EnsemblBacteria:EBMYCT00000000165
EnsemblBacteria:EBMYCT00000069653 GeneID:13319998 GeneID:886721
GeneID:924519 KEGG:mtc:MT1453 KEGG:mtu:Rv1409 KEGG:mtv:RVBD_1409
PATRIC:18124964 TubercuList:Rv1409 OMA:MAFNNLK
ProtClustDB:CLSK791144 Uniprot:P71677
Length = 339
Score = 140 (54.3 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 44/153 (28%), Positives = 69/153 (45%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T P P G +I G++ G G G AEV A+ G GA + MEP +
Sbjct: 25 GTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRAGGLAAGAIVVVTMEPCNH 84
Query: 121 HGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH--VLGEDLQSKIIE 177
+G V+AL++A + VV + +P + G L + GLQV VL E + + +
Sbjct: 85 YGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAGLQVRSGVLAEQVAAGPLR 143
Query: 178 EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
E +H+ + +P +KYA ++D
Sbjct: 144 E-----------WLHKQRTGLPHVTWKYATSID 165
Score = 130 (50.8 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 37/120 (30%), Positives = 66/120 (55%)
Query: 191 IHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR 250
+H+ + +P +KYA ++D G+ AA+ G + WISS+ +R + R
Sbjct: 146 LHKQRTGLPHVTWKYATSID------------GRSAAADGSSQWISSEAARLDLHRRRAI 193
Query: 251 SDAVVVGGNTVRRDNPRLTARHGGG----HTPMRIVLTQTLNLPEEANLWDVSDAPTIVV 306
+DA++VG TV D+P LTAR G P+R+V+ + ++P EA + + +A T+++
Sbjct: 194 ADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVLN-DEARTMMI 251
Score = 117 (46.2 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+V+ DR +L E G TLA + + +G I+++ A+VAP ++GG T V ++G+
Sbjct: 258 EVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAYVAPILLGGP--VTAVDDVGVSN 313
Query: 396 MSQALDLIDICYEQVGPDMLIS 417
++ AL E+VGPD+L+S
Sbjct: 314 ITNALRWQFDSVEKVGPDLLLS 335
>TIGR_CMR|BA_4331 [details] [associations]
symbol:BA_4331 "riboflavin biosynthesis protein RibD"
species:198094 "Bacillus anthracis str. Ames" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:NP_846564.1 RefSeq:YP_020977.1 RefSeq:YP_030268.1
ProteinModelPortal:Q81MB8 SMR:Q81MB8 IntAct:Q81MB8 DNASU:1087530
EnsemblBacteria:EBBACT00000009552 EnsemblBacteria:EBBACT00000014359
EnsemblBacteria:EBBACT00000024446 GeneID:1087530 GeneID:2815149
GeneID:2850342 KEGG:ban:BA_4331 KEGG:bar:GBAA_4331 KEGG:bat:BAS4018
ProtClustDB:CLSK873057 BioCyc:BANT260799:GJAJ-4075-MONOMER
BioCyc:BANT261594:GJ7F-4215-MONOMER Uniprot:Q81MB8
Length = 370
Score = 262 (97.3 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 73/237 (30%), Positives = 117/237 (49%)
Query: 184 LLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDR 243
+L+N H ++ PF K AM+LD GK A +G + WI+ + +R
Sbjct: 132 VLLNRYFFHYMKTKRPFVTIKTAMSLD------------GKTATVTGESKWITGEKARAD 179
Query: 244 VFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQTLNLPEEANLWDVSDAP 302
V R DA++VG NTV DNP LT R GG P+R++L L P +++ S AP
Sbjct: 180 VHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAP 239
Query: 303 T-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYFHDRGYLSILWECGGTLAA 359
T I+V + K Y S+ + + + + +DV+ ++ LS+ E G T+ A
Sbjct: 240 TWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHA 298
Query: 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
S + + +++ +++PK+IGG APT G + AL L +Q+G D+ I
Sbjct: 299 SFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKI 355
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 51/179 (28%), Positives = 80/179 (44%)
Query: 59 SAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPG 118
+ G TSP+P G ++ G + G G G + AEV A+ G +GAT Y+ +EP
Sbjct: 17 TCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGDKAKGATVYVTLEPC 75
Query: 119 DCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175
G L++ + RVV+ NPL + G R L G++V + +
Sbjct: 76 SHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRKLEEAGIEV-------TTGV 126
Query: 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD---VILPGVLSWMLTGKIAASSGH 231
+E +L+N H ++ PF K AM+LD + G W +TG+ A + H
Sbjct: 127 LEA---EAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKW-ITGEKARADVH 181
>UNIPROTKB|Q58085 [details] [associations]
symbol:arfC "2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate reductase" species:243232 "Methanocaldococcus
jannaschii DSM 2661" [GO:0009231 "riboflavin biosynthetic process"
evidence=IDA] [GO:0016616 "oxidoreductase activity, acting on the
CH-OH group of donors, NAD or NADP as acceptor" evidence=IDA]
[GO:0046983 "protein dimerization activity" evidence=IDA]
[GO:0050661 "NADP binding" evidence=IDA] [GO:0051287 "NAD binding"
evidence=IDA] [GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil
reductase activity" evidence=IDA] InterPro:IPR002734
InterPro:IPR006401 InterPro:IPR011549 Pfam:PF01872
UniPathway:UPA00275 InterPro:IPR024072 GO:GO:0051287 GO:GO:0050661
GO:GO:0046983 GO:GO:0016616 KO:K14654 EMBL:L77117
GenomeReviews:L77117_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 OMA:HLITEWE TIGRFAMs:TIGR01508 TIGRFAMs:TIGR00227
PIR:G64383 RefSeq:NP_247655.1 PDB:2AZN PDBsum:2AZN
ProteinModelPortal:Q58085 SMR:Q58085 GeneID:1451537
KEGG:mja:MJ_0671 eggNOG:COG1985 ProtClustDB:PRK05625
BioCyc:MetaCyc:MONOMER-14596 EvolutionaryTrace:Q58085
Uniprot:Q58085
Length = 224
Score = 240 (89.5 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 66/188 (35%), Positives = 97/188 (51%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPM 279
L GK+A + + IS + RV +R D ++VG TV +D+PRLT P+
Sbjct: 19 LDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPV 77
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA---RRKFQKYLASRGVEVVEFDI--LNS 334
RIV+ L +P A + + DA TI+ T + K K L GVEVV+ ++
Sbjct: 78 RIVVDSKLRVPLNARVLN-KDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDL 136
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ +M+ +D+G SIL E GGTL GL+ +V ++APKI GGK APT V G
Sbjct: 137 KKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFK 196
Query: 395 EMSQALDL 402
+ + + L
Sbjct: 197 TVDECVKL 204
>TIGR_CMR|CBU_0643 [details] [associations]
symbol:CBU_0643 "riboflavin biosynthesis protein RibD"
species:227377 "Coxiella burnetii RSA 493" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_819673.1
ProteinModelPortal:Q83DQ3 PRIDE:Q83DQ3 GeneID:1208528
KEGG:cbu:CBU_0643 PATRIC:17929965 ProtClustDB:CLSK914208
BioCyc:CBUR227377:GJ7S-640-MONOMER Uniprot:Q83DQ3
Length = 354
Score = 167 (63.8 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 57/226 (25%), Positives = 104/226 (46%)
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V G+ ++ ++ A +C L+ P I+ + + K+ + L+ L GKI
Sbjct: 109 VCGKGIEQ--LQRAGVNCFLIELPEINAFYESYRYWI-KHKRPW---VTAKLALSLDGKI 162
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
+ G ++ + R + R +SDA++ NT+ D+P+L R G I +
Sbjct: 163 VGNEGKPVRLTGEGLRQYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYILD 222
Query: 286 T-LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEY 340
T L LP A + +++ IV A +K Q+ L + + +E + L+ +V++
Sbjct: 223 THLRLPLNALIHQTAES-IIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDV 281
Query: 341 FHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
+ G + LW E GGT S + LI++ ++APKI+G P
Sbjct: 282 IGNDG-IHDLWIEAGGTCFQSFLKENLINRALIYIAPKILGSTAMP 326
Score = 137 (53.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
GF +P+P+ G ++ K+ G+ G AEV+A+++ G RGA Y+ +EP C
Sbjct: 21 GFCAPNPSVGAVVVKDD-KIISTGFHKRSGLPHAEVEAIKSLGDKARGAALYVTLEPC-C 78
Query: 121 HGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
H T ++Q+GI V G+ +P + G+ + L+ G+ ++
Sbjct: 79 HFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQRAGVNCFLI 127
>TIGR_CMR|CPS_0730 [details] [associations]
symbol:CPS_0730 "riboflavin biosynthesis protein RibD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_267480.1
ProteinModelPortal:Q488N4 STRING:Q488N4 GeneID:3522815
KEGG:cps:CPS_0730 PATRIC:21464775
BioCyc:CPSY167879:GI48-817-MONOMER Uniprot:Q488N4
Length = 389
Score = 240 (89.5 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 104/393 (26%), Positives = 175/393 (44%)
Query: 63 TSPHPNFGCLIAT---STGKVAGEGYLYAQGTKPAEVQAV-EA---GGSFCRGATAYLNM 115
TSP+P GC++ + GKV GEGY G AEV A+ EA + +GATAY+ +
Sbjct: 15 TSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVNNPALIKGATAYVTL 74
Query: 116 EPGDC-HGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQ 172
EP C H T ALV AG++ V+ + +P + G + L G+ V Q
Sbjct: 75 EP--CSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKAGITV-------Q 125
Query: 173 SKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD---VILPGVLSWMLTGKIAASS 229
S ++E++ + L+N IH+ + +P+ K A +LD + G W+ +
Sbjct: 126 SGLLEQSAR---LLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQDV 182
Query: 230 GH--AAWISSKTSRDRV-FDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
A + T D V FD + G ++ + P+ R P+RIV+
Sbjct: 183 QRLRAQSCAIITGADSVLFDNAKMTVRWSELGE-LKSNYPKEALRQ-----PLRIVIDSQ 236
Query: 287 LNLPEEANLWDVSDAPTIVVTQRG---ARRKFQKYLAS-----RGVEVVEFDI------- 331
L L++ +P +++ K + +L + VE V+ +
Sbjct: 237 NRLTPNLALFE-HQSPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGK 295
Query: 332 --LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG--KNAPTP 387
+N + ++EY RG IL E G L+ + I L++++ + APK++GG KN
Sbjct: 296 LKINLKALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDGKNL-ME 354
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+ + + ++AL + DI VG D+ I+ L
Sbjct: 355 MPSVSKLNQAKALTISDI--RMVGVDIRITSQL 385
>UNIPROTKB|O66747 [details] [associations]
symbol:ribD2 "2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate reductase" species:224324 "Aquifex aeolicus VF5"
[GO:0009231 "riboflavin biosynthetic process" evidence=IDA]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=IDA] [GO:0046983 "protein
dimerization activity" evidence=IDA] [GO:0050661 "NADP binding"
evidence=IDA] InterPro:IPR002734 InterPro:IPR006401
InterPro:IPR011549 Pfam:PF01872 UniPathway:UPA00275
InterPro:IPR024072 GO:GO:0050661 GO:GO:0046983 GO:GO:0016616
GO:GO:0009231 EMBL:AE000657 GenomeReviews:AE000657_GR
Gene3D:3.40.430.10 SUPFAM:SSF53597 PIR:G70339 RefSeq:NP_213307.1
ProteinModelPortal:O66747 GeneID:1193073 KEGG:aae:aq_436
PATRIC:20958448 HOGENOM:HOG000225965 KO:K00082 OMA:HLITEWE
ProtClustDB:CLSK871671 BioCyc:AAEO224324:GJBH-326-MONOMER
GO:GO:0008703 TIGRFAMs:TIGR01508 TIGRFAMs:TIGR00227 Uniprot:O66747
Length = 224
Score = 221 (82.9 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 51/179 (28%), Positives = 95/179 (53%)
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
ASS + + + + ++R + D ++VG TVR DNP LT R+ G P+RI+ T
Sbjct: 24 ASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETVRTDNPSLTVRYAKGKNPVRIIPCST 83
Query: 287 LNLPEEANLWDVSDAPTIVVT-QRGARRKFQKYLASRGVEVVEF--DILNSRDVMEYFHD 343
N+P +AN+ + +APTI+ T +R + + +K + G EV+ ++++ ++ +
Sbjct: 84 ANVPLDANVLNTKEAPTIIATTERAPKERLEK-IKELGAEVIVVGDELVDFDKLLPELYR 142
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
RG S++ E G ++ + ++ ++ P I+GG+N PT V G ++ L L
Sbjct: 143 RGIKSLMVEGGASINWEFVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKLKNLLHL 201
>UNIPROTKB|Q0C0I7 [details] [associations]
symbol:HNE_2058 "Riboflavin biosynthesis protein RibD
C-terminal domain protein" species:228405 "Hyphomonas neptunium
ATCC 15444" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR002734 InterPro:IPR011549 Pfam:PF01872
InterPro:IPR024072 GO:GO:0050661 GO:GO:0009231 EMBL:CP000158
GenomeReviews:CP000158_GR Gene3D:3.40.430.10 SUPFAM:SSF53597
HOGENOM:HOG000225965 GO:GO:0008703 TIGRFAMs:TIGR00227
eggNOG:COG1985 KO:K11752 RefSeq:YP_760756.1
ProteinModelPortal:Q0C0I7 STRING:Q0C0I7 GeneID:4289460
KEGG:hne:HNE_2058 PATRIC:32216957 OMA:APTFMDG
ProtClustDB:CLSK777674 BioCyc:HNEP228405:GI69-2082-MONOMER
Uniprot:Q0C0I7
Length = 217
Score = 220 (82.5 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTP 278
L G+IA + G + WI+S SR R +R +DA++VG T D+P LTAR P
Sbjct: 14 LDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPLLTARTVPLPAKQP 73
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
+RIV LP + L +D +V G + LA+ GV++ D
Sbjct: 74 VRIVADSNARLPTASRLASSTDLGRVVAVTAG---QGSDALAAAGVDIWRCGNGVRMDAG 130
Query: 339 EYFHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
E+ G ++L E G TLAAS + +GL+ ++ F AP +IGG P + LG+ +
Sbjct: 131 EFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDGLPA-LGALGLSD 189
Query: 396 MSQALDLIDICYEQVGPDML 415
+ A + E++G D+L
Sbjct: 190 LKSAARWRPVATERIGDDVL 209
>DICTYBASE|DDB_G0281625 [details] [associations]
symbol:DDB_G0281625 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0281625 EMBL:AAFI02000042 eggNOG:COG3236
InterPro:IPR012816 Pfam:PF08719 TIGRFAMs:TIGR02464
RefSeq:XP_640541.1 ProteinModelPortal:Q54TQ0
EnsemblProtists:DDB0237847 GeneID:8623151 KEGG:ddi:DDB_G0281625
ProtClustDB:CLSZ2430311 Uniprot:Q54TQ0
Length = 153
Score = 212 (79.7 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 56/157 (35%), Positives = 82/157 (52%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
E +II FY++ D YG F+NFS + + T+ + EH +QA KF Q
Sbjct: 3 ENNIISFYRSTDAYGCFTNFSWFKVHFKNH----TFKTSEHAFQAFKFEH-----EQKIF 53
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
+I +K+ E+ R+ + D R DWE++K IMY KF+ HL +LL T
Sbjct: 54 FQILNSKTASESKRIAHL----NNDKKRKDWETIKDQIMYEICFEKFNQNDHLKLILLDT 109
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
G +VE+S D +WG G +G G N LG LM++R +
Sbjct: 110 GNLKIVESSEKDFYWGIG-DGSGRNQLGITLMKIRED 145
>TAIR|locus:2133074 [details] [associations]
symbol:PyrD "pyrimidine deaminase" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=IEA;IGI] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA;IDA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009570 "chloroplast stroma" evidence=IDA]
InterPro:IPR002125 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 InterPro:IPR024072
GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0055114 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 KO:K11752
TIGRFAMs:TIGR00326 EMBL:BT006051 EMBL:AK118717 IPI:IPI00537120
RefSeq:NP_567618.1 UniGene:At.32681 HSSP:Q12178
ProteinModelPortal:Q8GWP5 SMR:Q8GWP5 STRING:Q8GWP5 PaxDb:Q8GWP5
PRIDE:Q8GWP5 EnsemblPlants:AT4G20960.1 GeneID:827843
KEGG:ath:AT4G20960 TAIR:At4g20960 HOGENOM:HOG000257443
InParanoid:Q8GWP5 OMA:IGCTSPN PhylomeDB:Q8GWP5 ProtClustDB:PLN02807
BioCyc:MetaCyc:AT4G20960-MONOMER Genevestigator:Q8GWP5
Uniprot:Q8GWP5
Length = 426
Score = 182 (69.1 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 47/154 (30%), Positives = 79/154 (51%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
++ G TSP+P GC+I G + G+G+ G AEV A+ G ATAY+++EP
Sbjct: 87 RAIGCTSPNPMVGCVIVKD-GDIVGQGFHPKAGQPHAEVFALRDAGELAENATAYVSLEP 145
Query: 118 GDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKII 176
+ +G AL++A + RVV+G+ +P + + L+ G+ V V +
Sbjct: 146 CNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDVTVS--------V 197
Query: 177 EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
EE + C +N IHR + PF +Y+M+++
Sbjct: 198 EE--ELCKKMNEGFIHRMLTGKPFLALRYSMSVN 229
Score = 83 (34.3 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 52/253 (20%), Positives = 107/253 (42%)
Query: 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWI 235
+EE + C +N IHR + PF +Y+M+++ G L + G+ A+ SG +
Sbjct: 197 VEE--ELCKKMNEGFIHRMLTGKPFLALRYSMSVN----GCLLDKI-GQGASDSG--GYY 247
Query: 236 SSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PMRIVLTQTLNLPEE- 292
S L DA+++ +++ + ++++ + P++I++
Sbjct: 248 SK---------LLQEYDAIILS-SSLSDELSSISSQEAINVSIQPIQIIVASNAQQSHIL 297
Query: 293 ANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWE 352
A+ V ++ VV + ++S GVE V + +N +++Y ++RG S+L +
Sbjct: 298 ASSHTVEESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLD 357
Query: 353 CGGT------LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
G L L+ KV V P+ ++ + +E DL
Sbjct: 358 LRGNVKDLEVLLRDGFEQKLLQKVIIEVLPE--WSTKDERQIASMKWLESKHVKDLQS-- 413
Query: 407 YEQVGPDMLISGF 419
+Q+G +L+ G+
Sbjct: 414 -KQLGGSVLLEGY 425
>UNIPROTKB|Q9KPU1 [details] [associations]
symbol:VC_2271 "Riboflavin-specific deaminase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 73/257 (28%), Positives = 124/257 (48%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
TSP+PN GC+I T ++ GEG+ + G AEV A+ G RGATAY+ +EP +G
Sbjct: 26 TSPNPNVGCVI-TRGEQIVGEGFHFRAGEPHAEVHAMRQAGELTRGATAYVTLEPCSHYG 84
Query: 123 -DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE-EAR 180
L++AG+ +V+ +++P + G+ V+ LR G++V V G ++E +AR
Sbjct: 85 RTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEV-G------LLEADAR 137
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
++N + R + +PF K A +LD G + + GK + AA +
Sbjct: 138 ----VLNRGFLKRMETGMPFVQLKMAASLD----GQTA-LANGKSQWITSPAARKDVQRF 188
Query: 241 RDRVFDLRGRSDAVVVGGNT--VR-RDNPR-LTARHGGG--HTPMRIVLTQTLNLPEEAN 294
R + + S V+ + VR D P + A++ P+R++L + L E
Sbjct: 189 RAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELA 248
Query: 295 LWDVSDAPTIVVTQRGA 311
L+ + +P + V A
Sbjct: 249 LYQ-TPSPVLRVASENA 264
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 68/274 (24%), Positives = 123/274 (44%)
Query: 160 QGLQV-HVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+G+Q+ G +++ ++E +AR ++N + R + +PF K A +LD
Sbjct: 115 KGVQMLRDAGIEVEVGLLEADAR----VLNRGFLKRMETGMPFVQLKMAASLD------- 163
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------ 271
G+ A ++G + WI+S +R V R ++ A++ TV DN L R
Sbjct: 164 -----GQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPS 218
Query: 272 -------HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV 324
P+R++L + L E L+ + +P + V A A G
Sbjct: 219 SVQAQYAEADLRQPLRVILDRQHQLHPELALYQ-TPSPVLRVASENAELCIS---AENG- 273
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
+ D+ R+++ + ++ LW E G LA S I L+ ++ ++APK++G
Sbjct: 274 ---KLDL---RELLALLAQQHNVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327
Query: 384 APTPVSELGMVEMSQALDL-IDICYEQVGPDMLI 416
LG+ EM++A++L I+ C VG D+ I
Sbjct: 328 RGL-FGALGLTEMAEAIELKIEDC-RMVGADLRI 359
>TIGR_CMR|VC_2271 [details] [associations]
symbol:VC_2271 "riboflavin biosynthesis protein RibD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 73/257 (28%), Positives = 124/257 (48%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
TSP+PN GC+I T ++ GEG+ + G AEV A+ G RGATAY+ +EP +G
Sbjct: 26 TSPNPNVGCVI-TRGEQIVGEGFHFRAGEPHAEVHAMRQAGELTRGATAYVTLEPCSHYG 84
Query: 123 -DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE-EAR 180
L++AG+ +V+ +++P + G+ V+ LR G++V V G ++E +AR
Sbjct: 85 RTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEV-G------LLEADAR 137
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
++N + R + +PF K A +LD G + + GK + AA +
Sbjct: 138 ----VLNRGFLKRMETGMPFVQLKMAASLD----GQTA-LANGKSQWITSPAARKDVQRF 188
Query: 241 RDRVFDLRGRSDAVVVGGNT--VR-RDNPR-LTARHGGG--HTPMRIVLTQTLNLPEEAN 294
R + + S V+ + VR D P + A++ P+R++L + L E
Sbjct: 189 RAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELA 248
Query: 295 LWDVSDAPTIVVTQRGA 311
L+ + +P + V A
Sbjct: 249 LYQ-TPSPVLRVASENA 264
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 68/274 (24%), Positives = 123/274 (44%)
Query: 160 QGLQV-HVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+G+Q+ G +++ ++E +AR ++N + R + +PF K A +LD
Sbjct: 115 KGVQMLRDAGIEVEVGLLEADAR----VLNRGFLKRMETGMPFVQLKMAASLD------- 163
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------ 271
G+ A ++G + WI+S +R V R ++ A++ TV DN L R
Sbjct: 164 -----GQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPS 218
Query: 272 -------HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV 324
P+R++L + L E L+ + +P + V A A G
Sbjct: 219 SVQAQYAEADLRQPLRVILDRQHQLHPELALYQ-TPSPVLRVASENAELCIS---AENG- 273
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
+ D+ R+++ + ++ LW E G LA S I L+ ++ ++APK++G
Sbjct: 274 ---KLDL---RELLALLAQQHNVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327
Query: 384 APTPVSELGMVEMSQALDL-IDICYEQVGPDMLI 416
LG+ EM++A++L I+ C VG D+ I
Sbjct: 328 RGL-FGALGLTEMAEAIELKIEDC-RMVGADLRI 359
>UNIPROTKB|P25539 [details] [associations]
symbol:ribD "fused
diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase" species:83333
"Escherichia coli K-12" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050661 "NADP binding" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA;IDA] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA;IDA] [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=IEA;IDA] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0050661 GO:GO:0008270 SUPFAM:SSF53927
EMBL:U82664 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
EMBL:X64395 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 PIR:S26201 RefSeq:NP_414948.1 RefSeq:YP_488706.1
PDB:2G6V PDB:2O7P PDB:2OBC PDBsum:2G6V PDBsum:2O7P PDBsum:2OBC
ProteinModelPortal:P25539 SMR:P25539 DIP:DIP-10708N IntAct:P25539
MINT:MINT-1221612 PRIDE:P25539 EnsemblBacteria:EBESCT00000003732
EnsemblBacteria:EBESCT00000017165 GeneID:12934255 GeneID:945620
KEGG:ecj:Y75_p0402 KEGG:eco:b0414 PATRIC:32115977 EchoBASE:EB1297
EcoGene:EG11321 HOGENOM:HOG000257442 KO:K11752 OMA:LHVEAGF
ProtClustDB:PRK10786 BioCyc:EcoCyc:RIBOFLAVINSYNDEAM-MONOMER
BioCyc:ECOL316407:JW0404-MONOMER
BioCyc:MetaCyc:RIBOFLAVINSYNDEAM-MONOMER EvolutionaryTrace:P25539
Genevestigator:P25539 TIGRFAMs:TIGR00326 Uniprot:P25539
Length = 367
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 56/188 (29%), Positives = 88/188 (46%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
T P+PN GC+I G++ GEGY G AEV A+ G +GATAY+ +EP HG
Sbjct: 21 THPNPNVGCVIVKD-GEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHG 79
Query: 123 -DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV-HVLGEDLQSKIIEEAR 180
AL+ AG+ RVV +++P + G+ + L+ G+ V H L ++ EA
Sbjct: 80 RTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL-------MMSEAE 132
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLD---VILPGVLSWMLTGK------IAASSGH 231
+ +N + R + P+ K +LD + G W+ + + + + H
Sbjct: 133 Q----LNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSH 188
Query: 232 AAWISSKT 239
A SS T
Sbjct: 189 AILTSSAT 196
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 55/208 (26%), Positives = 95/208 (45%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
L G+ A +SG + WI+S +R V LR +S A++ TV D+P LT R +
Sbjct: 157 LDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQ 216
Query: 281 IVLTQTLNLPEEANLW-DVSDAPTIV--VTQRGARRKFQKYLA-SRG-VEVVEFDILNSR 335
+ Q NL + + D + T V + Q+ F + SR E V ++
Sbjct: 217 ALYPQQ-NLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEH 275
Query: 336 ----DVMEYFHDRGYLSI--LW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
D++ G I +W E G TLA + + +GL+ ++ ++APK++G +A
Sbjct: 276 KGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS-DARGLC 334
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLI 416
+ G+ +++ A VGPD+ +
Sbjct: 335 TLPGLEKLADAPQFKFKEIRHVGPDVCL 362
>TIGR_CMR|APH_0037 [details] [associations]
symbol:APH_0037 "riboflavin biosynthesis protein RibD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 OMA:RWITNEL
ProtClustDB:CLSK749535 RefSeq:YP_504671.1 ProteinModelPortal:Q2GLT0
STRING:Q2GLT0 GeneID:3930894 KEGG:aph:APH_0037 PATRIC:20948608
BioCyc:APHA212042:GHPM-76-MONOMER Uniprot:Q2GLT0
Length = 364
Score = 180 (68.4 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
+ G P+P GC++ G V G G+ A G AE+ A++ G+ GAT Y+ +EP
Sbjct: 17 RGLGNVYPNPAVGCVVIRD-GVVVGRGWTVAGGRPHAEIVALQNAGNRAIGATVYVTLEP 75
Query: 118 GDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175
CH T SAL+ AG++RVV+G+++P + G+ + +L + G++V G LQ +
Sbjct: 76 C-CHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEVKY-GV-LQQQA 132
Query: 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
EA + + ++HR P K A TLD
Sbjct: 133 --EALNAGFFYSK-VLHR-----PLITAKLATTLD 159
Score = 158 (60.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 84/321 (26%), Positives = 133/321 (41%)
Query: 124 HTAVSALVQAG---ITRVVVGIRNPLQH--LRGQAVRALRSQGLQVHVLG-ED----LQS 173
H + AL AG I V P H + G AL + G+ V+G +D +
Sbjct: 51 HAEIVALQNAGNRAIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSG 110
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD-VILPGVLSWMLTGKIAASSGHA 232
K I + + V ++ + + F Y+ L ++ L+ L GKI+ G
Sbjct: 111 KGISSLEAAGIEVKYGVLQQQAEALNAGFF-YSKVLHRPLITAKLATTLDGKISFDEGCD 169
Query: 233 AWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRIVLTQTLNLP 290
WI++ +R V R DA++VG NTV D+P L R G H+P+R+V+ ++ L
Sbjct: 170 RWITNDLTRKWVHKQRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLL 229
Query: 291 EEANL-WDVSDAPTIVVTQRGARRKFQ--KYL-ASRGVEVVEFDILNSRDVMEYFHDRGY 346
+ PT +VT + F+ KY+ G E +E N V G
Sbjct: 230 AHHKIVCTAGTIPTYIVTDNDPQCVFENVKYIKVDGGTEFLE----NM--VRALTAQLGI 283
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK--NAPTPV-SELGM----VE---- 395
+ E GG L + LI + A KI G K N+ T + ++ G V+
Sbjct: 284 TRLFVEGGGILITELLKKKLIDRFIWTRANKISGSKGLNSITDIDAQFGQCCKFVKTDTL 343
Query: 396 --MSQALDLIDICYEQVGPDM 414
+DL D+ Y Q+G ++
Sbjct: 344 SFFDDTVDLFDVKYTQLGSNL 364
>TIGR_CMR|NSE_0499 [details] [associations]
symbol:NSE_0499 "riboflavin biosynthesis protein RibD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506383.1 ProteinModelPortal:Q2GDR3 STRING:Q2GDR3
GeneID:3932118 KEGG:nse:NSE_0499 PATRIC:22681047 OMA:PPCADRI
ProtClustDB:CLSK2527729 BioCyc:NSEN222891:GHFU-519-MONOMER
Uniprot:Q2GDR3
Length = 372
Score = 175 (66.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 67/243 (27%), Positives = 109/243 (44%)
Query: 141 GIRNPLQHLRGQAVRALRSQGLQ-VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVP 199
GI+N R R + +G+Q + G + + I+ ++ C + N +R P
Sbjct: 99 GIKNVFIGTRDPDTR-VNGKGIQKLQESGIVVTTGIL---KRECCVSNIGYFYRQVLGKP 154
Query: 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGN 259
F + K A TLD GKIA +G +AWI+S R LR S +V++ +
Sbjct: 155 FVILKTATTLD------------GKIACFNGKSAWITSPAMRRTAHMLRRMSSSVMISYS 202
Query: 260 TVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYL 319
T++ D+P+L+ R G V+ T N +D +V G R F K+
Sbjct: 203 TLKHDDPQLSCRLPGVKKESIKVVLDTRGEISSPNFKIFNDG---IVWSFGKRNIF-KHK 258
Query: 320 ASRGVEV-VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
E + ++L+ DV++ G S+L ECGG L +S I+ L ++ F + K+
Sbjct: 259 NFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECGGKLFSSFITGDLFDQIIWFRSNKV 318
Query: 379 IGG 381
GG
Sbjct: 319 AGG 321
Score = 172 (65.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
GFT+ +P+ GC+I +V G+G G+ AE A++ G RGA Y +EP
Sbjct: 26 GFTADNPSVGCIIVKDD-EVVGKGVTGINGSPHAEAVALKVAGIKARGADLYTTLEPCAH 84
Query: 121 HGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
HG TA ++++GI V +G R+P + G+ ++ L+ G+ V + I+
Sbjct: 85 HG-RTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQKLQESGIVV-------TTGIL-- 134
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
++ C + N +R PF + K A TLD
Sbjct: 135 -KRECCVSNIGYFYRQVLGKPFVILKTATTLD 165
Score = 37 (18.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 559 LNSMLLSTGGSVLVEASPHDLF 580
+NS+L+ GG + DLF
Sbjct: 286 INSVLVECGGKLFSSFITGDLF 307
>TIGR_CMR|ECH_0169 [details] [associations]
symbol:ECH_0169 "riboflavin biosynthesis protein RibD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506994.1 ProteinModelPortal:Q2GHT9 STRING:Q2GHT9
GeneID:3927940 KEGG:ech:ECH_0169 PATRIC:20575879 OMA:RWITNEL
ProtClustDB:CLSK749535 BioCyc:ECHA205920:GJNR-169-MONOMER
Uniprot:Q2GHT9
Length = 360
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 47/155 (30%), Positives = 71/155 (45%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEP 117
+ G P+P GC++ G V G GY G AEV A+ G +G+T Y+ +EP
Sbjct: 18 RGLGNVFPNPAVGCIVVNH-GMVVGRGYTQVGGRPHAEVIALNNAGHLAKGSTVYVTLEP 76
Query: 118 GDCHGDHTAVSAL--VQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175
+G T AL + AG+ R+V+ ++P + G + LR+ G+ V +
Sbjct: 77 CSHYGQ-TGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVKC------GVM 129
Query: 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
EEAR+ +N + PF K A TLD
Sbjct: 130 YEEARE----LNIGFFYSKIKNRPFITVKLASTLD 160
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 66/234 (28%), Positives = 111/234 (47%)
Query: 168 GEDLQSKII-EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G D++ ++ EEAR+ +N + PF K A TLD GKIA
Sbjct: 121 GIDVKCGVMYEEARE----LNIGFFYSKIKNRPFITVKLASTLD------------GKIA 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRIVLT 284
G++ WI+++ +R+ V R DA++VG NT+ +DNP L R G ++P+RIV+
Sbjct: 165 LKDGNSRWITNELTRNWVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVID 224
Query: 285 QTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+ + + N+ SD PT ++T + K K AS V + + L R M+
Sbjct: 225 RFGKVCDYHNIIKTSDVIPTYILTNDVPQTKLGK--ASCLVVDDKDNFL--RSAMKMLSV 280
Query: 344 R-GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ G + E GG L + + LI ++ + KI G P+ + +L ++ +
Sbjct: 281 KIGITRLFVEGGGVLITELLKNQLIDRIIWCRSNKIFGNDAIPS-IGDLDILTL 333
>UNIPROTKB|Q0C679 [details] [associations]
symbol:HNE_0030 "Riboflavin biosynthesis protein RibD
N-terminal domain protein" species:228405 "Hyphomonas neptunium
ATCC 15444" [GO:0003674 "molecular_function" evidence=ND]
[GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0016787 GO:GO:0009231 EMBL:CP000158
GenomeReviews:CP000158_GR HOGENOM:HOG000085050 eggNOG:COG0117
RefSeq:YP_758764.1 ProteinModelPortal:Q0C679 STRING:Q0C679
GeneID:4289604 KEGG:hne:HNE_0030 PATRIC:32212844 OMA:MVRISAD
ProtClustDB:CLSK2317020 BioCyc:HNEP228405:GI69-77-MONOMER
Uniprot:Q0C679
Length = 152
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 43/115 (37%), Positives = 58/115 (50%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T +P+ GCLI + G +AG G G AE A++ G TAY+ +EP C
Sbjct: 25 GLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAGGTAYVTLEP--C 82
Query: 121 H----GDHTAVSALVQAGITRVVVGIRNPLQHLR-GQAVRALRSQGLQVHV-LGE 169
G + LV+AGI RVVV I +P R G A+ LR G++V LG+
Sbjct: 83 RERSSGAPSCARKLVEAGIARVVVAIEDPHPTARDGLAI--LREAGVRVETGLGK 135
>UNIPROTKB|Q4K4F4 [details] [associations]
symbol:PFL_5821 "Uncharacterized protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CP000076
eggNOG:COG3236 KO:K09935 InterPro:IPR012816 Pfam:PF08719
TIGRFAMs:TIGR02464 HOGENOM:HOG000270610 RefSeq:YP_262879.2
GeneID:3480193 KEGG:pfl:PFL_5821 PATRIC:19881149
BioCyc:PFLU220664:GIX8-5861-MONOMER Uniprot:Q4K4F4
Length = 186
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 48/138 (34%), Positives = 68/138 (49%)
Query: 475 DVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVR 534
+++G + + S EH+ A K D Q+ +I A +P + +LGR + R D
Sbjct: 51 ELDG-IQYPSAEHFMMAGKALLFGD---QETHGRILKAVTPADVKQLGREV-RGFDD--- 102
Query: 535 SDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGE------ 588
+ W ++DI+ + KFS + L LLSTG VLVEASP D WG G E
Sbjct: 103 ARWTEARLDIVVQGNLAKFSQHQALGEYLLSTGDQVLVEASPVDRIWGIGLAAEDARASR 162
Query: 589 -----GLNYLGRLLMQLR 601
GLN LG LM++R
Sbjct: 163 PEQWRGLNLLGYALMEVR 180
>WB|WBGene00007440 [details] [associations]
symbol:C08E8.4 species:6239 "Caenorhabditis elegans"
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR012816
Pfam:PF08719 TIGRFAMs:TIGR02464 EMBL:AL021493 EMBL:Z81464
RefSeq:NP_507592.2 ProteinModelPortal:G5EFJ3 SMR:G5EFJ3
EnsemblMetazoa:C08E8.4 GeneID:182409 KEGG:cel:CELE_C08E8.4
CTD:182409 WormBase:C08E8.4 GeneTree:ENSGT00390000007281
OMA:DIMYLAC NextBio:917466 Uniprot:G5EFJ3
Length = 209
Score = 151 (58.2 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 47/133 (35%), Positives = 59/133 (44%)
Query: 486 EHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIM 545
E Y+ HK V D D + I TAK P GR + D +W DIM
Sbjct: 58 EQYFMYHKALLVGDV---DSAKVIITAKHPMVMKMTGRQLNMNRHDI--DNWTQKSRDIM 112
Query: 546 YRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGG--REGE---------GLNYLG 594
Y A KFS L ML T LVEAS +D WG G +E + G NYLG
Sbjct: 113 YLACLAKFSQNVELRKMLFRTQDMYLVEASGNDAIWGNGIWKEDKRSDDVANWHGTNYLG 172
Query: 595 RLLMQLRSEFLGE 607
+L ++R E +G+
Sbjct: 173 EILDRIRGELIGK 185
>WB|WBGene00015574 [details] [associations]
symbol:irg-1 species:6239 "Caenorhabditis elegans"
[GO:0050829 "defense response to Gram-negative bacterium"
evidence=IEP] [GO:0045087 "innate immune response" evidence=IEP]
GO:GO:0050829 GO:GO:0045087 eggNOG:COG3236 InterPro:IPR012816
Pfam:PF08719 TIGRFAMs:TIGR02464 GeneTree:ENSGT00390000007281
EMBL:FO080270 PIR:T31759 RefSeq:NP_503983.1
ProteinModelPortal:O16327 SMR:O16327 STRING:O16327 PaxDb:O16327
EnsemblMetazoa:C07G3.2.1 EnsemblMetazoa:C07G3.2.2 GeneID:182379
KEGG:cel:CELE_C07G3.2 UCSC:C07G3.2 CTD:182379 WormBase:C07G3.2
HOGENOM:HOG000270610 InParanoid:O16327 OMA:MYRACLE NextBio:917356
Uniprot:O16327
Length = 212
Score = 131 (51.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 50/171 (29%), Positives = 73/171 (42%)
Query: 451 IYFYKTWDPYGAF--SNFSPHPIQ--MPDVNGD---VTWSSVEHYYQAHKFTGVNDPAAQ 503
+ FY+ + F S F P++ + D + ++ E Y+ +K V D
Sbjct: 16 VLFYEAACVFSNFYPSGFEAKPVENFLKDTEKKEKLLKFTCSEQYFMYNKALLVGD---M 72
Query: 504 DFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSML 563
D E+I +P + LGR + + ++ W D+MYRA KFS +L
Sbjct: 73 DIAEQILKETNPMKMKLLGRKLSMTK-EQLKL-WSQKSKDVMYRACLEKFSQNEDCRMIL 130
Query: 564 LSTGGSVLVEASPHDLFWGGG-----------REGEGLNYLGRLLMQLRSE 603
T G LVEASP D WG G R G N+LG +L Q+R E
Sbjct: 131 FRTHGMKLVEASPTDKIWGIGLDKADQRCEDERNWRGSNWLGEVLDQVREE 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 612 596 0.00084 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 629 (67 KB)
Total size of DFA: 343 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.25u 0.10s 47.35t Elapsed: 00:00:06
Total cpu time: 47.26u 0.10s 47.36t Elapsed: 00:00:06
Start: Fri May 10 14:22:42 2013 End: Fri May 10 14:22:48 2013