BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039210
(612 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359476610|ref|XP_003631864.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Vitis
vinifera]
gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/585 (81%), Positives = 522/585 (89%), Gaps = 20/585 (3%)
Query: 34 APVFCKFS------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
+P+ CK + A D+ ++RRAA+IADKSAGFTSPHPNFGC+IAT+ GKV GEGYLY
Sbjct: 7 SPIICKATTNNNHPHALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATA-GKVVGEGYLY 65
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQ 147
AQGTKPAEVQAVEA G CRGATAYLNMEPGDCHGD TAVSALV+AGITR VVGIR+PLQ
Sbjct: 66 AQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRAVVGIRHPLQ 125
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
HLR A+RA+RS+GLQV VLGEDL+SKI+EEA KSCL+VNAPLI+RA SRVPFSV KYAM
Sbjct: 126 HLRSHALRAMRSEGLQVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAM 185
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
TLD GKIAASSGHA+WISSK SR RVF+LRGRSDA+VVGGNTVR+DNPR
Sbjct: 186 TLD------------GKIAASSGHASWISSKESRYRVFELRGRSDAIVVGGNTVRKDNPR 233
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
LTARHGGGH P+RIV+++TLNLPE ANLWDVS PTIVVTQRGAR+ FQK+LAS+GVEVV
Sbjct: 234 LTARHGGGHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVV 293
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
EFDILN+RDVMEYF+DRGYLSILWECGGTLAASAISSG+IHKVFAFVAPKIIGGKNAPTP
Sbjct: 294 EFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTP 353
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYE 447
V ELGMVEM+QALDLID YEQ+GPDMLISGFLQP PD PVIPS DET+AIDP+VTPYE
Sbjct: 354 VGELGMVEMTQALDLIDFSYEQIGPDMLISGFLQPFPDPTPVIPSVDETYAIDPSVTPYE 413
Query: 448 PSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHKFTGVNDPAAQDFV 506
II+FYKTWD YGAFSNFSPHPIQMPD NGD TWSSVEHYYQAHKF GVNDP +DFV
Sbjct: 414 SIIIFFYKTWDLYGAFSNFSPHPIQMPDENGDYQTWSSVEHYYQAHKFVGVNDPVPRDFV 473
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E IK+AKSPEEAAR+GR++QRQHPD VRSDW++VKID+MYRALKCKFSIYPHLNSML+ST
Sbjct: 474 EDIKSAKSPEEAARMGRTIQRQHPDLVRSDWDAVKIDVMYRALKCKFSIYPHLNSMLVST 533
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
GSVLVEASPHDLFWGGGR+GEGLNYLGRLLMQLRSEFLGES TS
Sbjct: 534 AGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESLTS 578
>gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera]
Length = 587
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/585 (81%), Positives = 520/585 (88%), Gaps = 20/585 (3%)
Query: 34 APVFCKFS------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
+P+ CK + A D+ ++RRAA+IADKSAGFTSPHPNFGC+IAT+ GKV GEGYLY
Sbjct: 7 SPIICKATTNNNHPHALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATA-GKVVGEGYLY 65
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQ 147
AQGTKPAEVQAVEA G CRGATAYLNMEPGDCHGD TAVSALV+AGITR VVGIR+PLQ
Sbjct: 66 AQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRXVVGIRHPLQ 125
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
HLR A+RA+RS+GLQV VLGEDL+SKI+EEA KSCL+VNAPLI+RA SRVPFSV KYAM
Sbjct: 126 HLRSHALRAMRSEGLQVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAM 185
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
TLD GKIAASSGHA+WISSK SR RVF+LRGRSDA+VVGGNTVR+DNP+
Sbjct: 186 TLD------------GKIAASSGHASWISSKESRYRVFELRGRSDAIVVGGNTVRKDNPQ 233
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
LTARHGGGH P+RIV+++TLNLPE ANLWDVS PTIVVTQR AR+ FQK+LAS+GVEVV
Sbjct: 234 LTARHGGGHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRXARKSFQKFLASKGVEVV 293
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
EFDILN+RDVMEYF+DRGYLSILWECGGTLAASAISSG+IHKVFAFVAPKIIGGKNAPTP
Sbjct: 294 EFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTP 353
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYE 447
V ELGMVEM+QALDLID YEQ+GPDMLISGFLQP PD PVIPS DET+AIDP+VTPYE
Sbjct: 354 VGELGMVEMTQALDLIDFSYEQIGPDMLISGFLQPFPDPTPVIPSVDETYAIDPSVTPYE 413
Query: 448 PSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHKFTGVNDPAAQDFV 506
SII+FYKTWD YGAFSNFSPHPIQMPD NGD TWSSVEHYYQAHKF GVNDP +DFV
Sbjct: 414 SSIIFFYKTWDLYGAFSNFSPHPIQMPDENGDYQTWSSVEHYYQAHKFVGVNDPVXRDFV 473
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E IK+AKSPEEAAR+GR++QRQHPD VRSDW+ VKID+MYRALKCKFSIYPHLNSML ST
Sbjct: 474 EDIKSAKSPEEAARMGRTIQRQHPDLVRSDWDXVKIDVMYRALKCKFSIYPHLNSMLXST 533
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
GSVLVEASPHDLFWGGGR+GEGLNYLGRLLMQLRSEFLGES TS
Sbjct: 534 AGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESLTS 578
>gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis]
gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis]
Length = 600
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/599 (79%), Positives = 527/599 (87%), Gaps = 29/599 (4%)
Query: 25 MAPSLVAN---SAPVFCK-------------FSRAEDAAYIRRAADIADKSAGFTSPHPN 68
M+ SL N S+PV C S DAA+I+RAA++ADKSAG TSPHPN
Sbjct: 1 MSFSLATNCYCSSPVICNAILNYNNNNHRNNHSHCSDAAFIKRAAELADKSAGCTSPHPN 60
Query: 69 FGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS 128
FGC+IAT+TG VAGEGYLYAQGTKPAEVQAVEA G + +GATAYLN+EPGDCHGDHTAVS
Sbjct: 61 FGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGEWSKGATAYLNLEPGDCHGDHTAVS 120
Query: 129 ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNA 188
+LVQAGITRVVVGIR+PL+HL+G AV ALR+ GLQV VLGEDLQSKIIE+ARKSCLLVNA
Sbjct: 121 SLVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQVEVLGEDLQSKIIEDARKSCLLVNA 180
Query: 189 PLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLR 248
PLIHRATSRVPFSV KYAMTLD GKIAASSGHAAW+SS+ SR+RVF+LR
Sbjct: 181 PLIHRATSRVPFSVLKYAMTLD------------GKIAASSGHAAWVSSRKSRNRVFELR 228
Query: 249 GRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQ 308
RSDA++VGGNTVRRDNPRLTARHGG + PMRIV++QTL+LPEEANLWDV D TIVVTQ
Sbjct: 229 SRSDAIIVGGNTVRRDNPRLTARHGGEYMPMRIVMSQTLDLPEEANLWDVCDVSTIVVTQ 288
Query: 309 RGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIH 368
RGARR FQK LAS+GVEVVEF+ILN R+VMEYFHDRGYLSILWECGGTLAASAIS+G+IH
Sbjct: 289 RGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWECGGTLAASAISAGVIH 348
Query: 369 KVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMP 428
KVFAFVAPKIIGGKNAP+PV ELGMVEM+QALDL+D+CYEQVGPDMLISGFLQPIP+L P
Sbjct: 349 KVFAFVAPKIIGGKNAPSPVGELGMVEMTQALDLVDVCYEQVGPDMLISGFLQPIPELTP 408
Query: 429 VIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEH 487
VIPSE+ETFAIDPTVTPYE SII+FYKTWDPYGAFSNFSPHPIQM D NG+ TWS+VEH
Sbjct: 409 VIPSENETFAIDPTVTPYESSIIFFYKTWDPYGAFSNFSPHPIQMLDDNGNYATWSTVEH 468
Query: 488 YYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYR 547
+YQAHKF GVN+P A+ EKIK+A+SPEEAAR+GRSMQRQHP VR+DWE+VKID+MY+
Sbjct: 469 FYQAHKFLGVNNPDAKYCTEKIKSARSPEEAARMGRSMQRQHPHLVRTDWENVKIDVMYK 528
Query: 548 ALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLG 606
ALKCKFSIYPHLNSMLLST GSVLVEASPHDLFWGGGREGEGLNYLGRLLM+LRS+FLG
Sbjct: 529 ALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMRLRSKFLG 587
>gi|356566953|ref|XP_003551689.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max]
Length = 594
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/582 (78%), Positives = 510/582 (87%), Gaps = 20/582 (3%)
Query: 28 SLVANSAPVFCKFS-------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKV 80
+L AN + + CKF A DA YIRRAA +ADKSAGFTSPHPNFGC+I + +GKV
Sbjct: 7 TLTANPSSIICKFKASLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKV 66
Query: 81 AGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVV 140
AGEGYLYAQGT AEVQAV+A G CRGATAYLNMEPGDCHGDH+AVSAL+Q G+ RVVV
Sbjct: 67 AGEGYLYAQGTAAAEVQAVKAAGELCRGATAYLNMEPGDCHGDHSAVSALLQGGVKRVVV 126
Query: 141 GIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPF 200
G+R+PLQHLRG AVRALR+QGL V +LGEDL S +IE+A+K CLLVNAPLI RA RVPF
Sbjct: 127 GMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPF 186
Query: 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNT 260
SV KYAMTLD GKIAA++GHA+WIS K SR+ VF+LRGRSDAV+VGGNT
Sbjct: 187 SVLKYAMTLD------------GKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNT 234
Query: 261 VRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA 320
VRRDNPRLTARHGGGH PMRIV+TQTL+LPE+ANLWD+S+ TIVVTQRGARR FQK LA
Sbjct: 235 VRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLA 294
Query: 321 SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
S+GVEVVEFDILN+R+VMEYFHDRGYLSILWECGGTLAASAISSG+IHKV+AFVAPKIIG
Sbjct: 295 SKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIG 354
Query: 381 GKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAID 440
GKNAP+PV +LGMVEMSQAL+LID+CYEQVGPDMLISGFLQP+PD++PVIPS DETF D
Sbjct: 355 GKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVAD 414
Query: 441 PTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVND 499
PTV+PY+ II+FYKTWDPYGAFSNFSPHPIQMPD NGD VTW SVEHYYQAHKF GV+D
Sbjct: 415 PTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDD 474
Query: 500 PAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHL 559
P AQD VE IK+AKSPEEAAR+GRSMQ+Q P +RSDW+++KID+MYRALKCKFSIYPHL
Sbjct: 475 PLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHL 534
Query: 560 NSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLR 601
NSMLLST GSVLVEASPHDLFWGGGR+GEGLNYLGRLLM+LR
Sbjct: 535 NSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLR 576
>gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa]
gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa]
Length = 592
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/589 (79%), Positives = 516/589 (87%), Gaps = 29/589 (4%)
Query: 33 SAPVFCK----------FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAG 82
S+P+ CK + + DAAYI+RAA IAD SAGF+SPHPNFGC+IAT++G VAG
Sbjct: 13 SSPILCKSIASNSNHSHAAHSLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAG 72
Query: 83 EGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGI 142
EGYLYAQGTK AEV AVEA G F +G+TAYLNMEPGDCHGD +AVSALVQAGITRVVVGI
Sbjct: 73 EGYLYAQGTKAAEVLAVEAAGGFSKGSTAYLNMEPGDCHGDQSAVSALVQAGITRVVVGI 132
Query: 143 RNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSV 202
R+PLQHL G A+R+LR QGLQV V+GEDL+SKI+EEARKSCLLVNAPLIHRATS+VPFSV
Sbjct: 133 RHPLQHLHGNAIRSLRGQGLQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSV 192
Query: 203 FKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVR 262
KYAMTLD GKIA +SGHA WISSK SR+RVF+LRGRSDA++VGGNTVR
Sbjct: 193 LKYAMTLD------------GKIATTSGHATWISSKKSRNRVFELRGRSDAIIVGGNTVR 240
Query: 263 RDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR 322
+DNPRLTARHGGGHTP+RIV+TQT NLPEEANLWD+SD TIVVTQRGARR FQK LAS+
Sbjct: 241 KDNPRLTARHGGGHTPIRIVMTQTFNLPEEANLWDISDVSTIVVTQRGARRSFQKLLASK 300
Query: 323 GVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
GVEVVEFDILN R+VMEYFHDRGYLSILWECGGTLAASAISSG+IHKVFAFVAPKIIGGK
Sbjct: 301 GVEVVEFDILNPREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGK 360
Query: 383 NAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPT 442
NAP+PV ELGMVEMSQALDLID+C+EQVGPDMLISGFLQP+PDL+PVIPSEDETFAIDP+
Sbjct: 361 NAPSPVGELGMVEMSQALDLIDVCFEQVGPDMLISGFLQPVPDLVPVIPSEDETFAIDPS 420
Query: 443 VTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPA 501
+TPYE II+FYKTWDPYGAFSNFSPHPIQMPD +G TWSS AHKF GV++P
Sbjct: 421 ITPYESRIIFFYKTWDPYGAFSNFSPHPIQMPDGSGAYATWSS------AHKFVGVDEPV 474
Query: 502 AQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNS 561
A+D VEKIK AKSPEEAAR+GRSMQ+Q PD VRSDWE +KID+MYRALKCKFSIYPHL S
Sbjct: 475 AKDCVEKIKFAKSPEEAARMGRSMQKQRPDLVRSDWEGLKIDVMYRALKCKFSIYPHLQS 534
Query: 562 MLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESST 610
MLLST GSVLVEASPHDLFWGGGREGEGLNYLGRLLM +RSEFLGE S+
Sbjct: 535 MLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMLIRSEFLGECSS 583
>gi|334185794|ref|NP_001190026.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 596
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/595 (75%), Positives = 514/595 (86%), Gaps = 25/595 (4%)
Query: 30 VANSAPVFCKFSRAE----------DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGK 79
+++S+P+ C+ + + DAA+IRRAAD+++ SAG TSPHPNFGC+IATS+GK
Sbjct: 7 ISSSSPLICRATLSNGDNSRNYHTTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGK 66
Query: 80 VAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVV 139
VAGEGYLYAQGTKPAE AVEA G F RGATAYLNMEPGDCHGDHTAVSALVQAGI RVV
Sbjct: 67 VAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPGDCHGDHTAVSALVQAGIERVV 126
Query: 140 VGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVP 199
VGIR+PLQHLRG A+R LRS G++V+VLGED +SK++E+ARKSCLLVNAPLIHRA SRVP
Sbjct: 127 VGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVP 186
Query: 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGN 259
FSV KYAMTLD GKIAASSGHAAWISSK SR RVF+LRG SDAV+VGGN
Sbjct: 187 FSVLKYAMTLD------------GKIAASSGHAAWISSKLSRTRVFELRGGSDAVIVGGN 234
Query: 260 TVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYL 319
TVR+D+PRLTARHG GHTP RIV+TQ+L+LPE+ANLWDVS+ TIVVTQRGAR+ FQK L
Sbjct: 235 TVRQDDPRLTARHGQGHTPTRIVMTQSLDLPEKANLWDVSEVSTIVVTQRGARKSFQKLL 294
Query: 320 ASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKII 379
AS+GVEVVEFD+LN R+VMEYFH RGYLSILWECGGTLAASAISS +IHKV AFVAPKII
Sbjct: 295 ASKGVEVVEFDMLNPREVMEYFHLRGYLSILWECGGTLAASAISSSVIHKVVAFVAPKII 354
Query: 380 GGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAI 439
GG AP+PV +LGMVEM+QAL+LID+CYEQVGPDML+SGFLQPIPDL+PVIPSED T I
Sbjct: 355 GGSKAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLVSGFLQPIPDLLPVIPSEDATVEI 414
Query: 440 DPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMP--DVNGD-VTWSSVEHYYQAHKFTG 496
DP+V P+EPSII+FYKTWD YG+FSNFSPHPI+MP + N D +TWSSVEHYYQA+KF G
Sbjct: 415 DPSVDPFEPSIIFFYKTWDLYGSFSNFSPHPIRMPYGEENDDYMTWSSVEHYYQANKFVG 474
Query: 497 VNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIY 556
V +P A D VEKI+TA+SPEEAA +GRS RQ P+ VR+DWE VKI++MY+ALKCKFS Y
Sbjct: 475 VENPKAYDCVEKIRTARSPEEAALIGRSTLRQKPELVRNDWEDVKIEVMYKALKCKFSTY 534
Query: 557 PHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
PHL SMLLST G+VLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE+LGESS S
Sbjct: 535 PHLKSMLLSTIGTVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEYLGESSVS 589
>gi|356530018|ref|XP_003533582.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max]
Length = 594
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/582 (75%), Positives = 500/582 (85%), Gaps = 20/582 (3%)
Query: 28 SLVANSAPVFCKFS-------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKV 80
+L AN + V CK A DA YIRRAA +ADKSAGFTSPHPNFGC+I + +GKV
Sbjct: 7 TLTANPSSVICKCKVSLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKV 66
Query: 81 AGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVV 140
+GEGYLYAQGT AEVQAV + CRGATAYLN+EP DCHGDH+AVSAL+Q G+ RVV+
Sbjct: 67 SGEGYLYAQGTTAAEVQAVASAAELCRGATAYLNLEPSDCHGDHSAVSALLQGGVKRVVI 126
Query: 141 GIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPF 200
G+R+PLQHLRG AVRALR+QGL V +LGEDL S +IE+A+K CLLVNAPLI RA+ RVPF
Sbjct: 127 GMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRASLRVPF 186
Query: 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNT 260
SV KYAMTLD GKIAA++GHA+WIS K SR+ VF+LRGRSDAV+VGGNT
Sbjct: 187 SVLKYAMTLD------------GKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNT 234
Query: 261 VRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA 320
VRRDNPRLTARHGGGH PMRIV+TQTL+LPEEANLWD+S+ TIVVTQRGARR FQK LA
Sbjct: 235 VRRDNPRLTARHGGGHMPMRIVMTQTLDLPEEANLWDMSEVSTIVVTQRGARRSFQKLLA 294
Query: 321 SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
S+GVEVVEFDILN R+VMEYFHD GYLSILWECGGTLAASAISSG+IHKV+AFVAPKIIG
Sbjct: 295 SKGVEVVEFDILNPREVMEYFHDCGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIG 354
Query: 381 GKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAID 440
GKNAP+PV +LGMV MSQAL+LID+CYEQVGPDMLISGFLQP+PD++PVIPS +ETF +D
Sbjct: 355 GKNAPSPVGDLGMVAMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSLNETFVVD 414
Query: 441 PTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVND 499
PTV+PYE II+FYKTWDPYG SN+SPHPIQMPD NGD VTW SVEHYYQAHKF V+D
Sbjct: 415 PTVSPYESRIIFFYKTWDPYGVLSNYSPHPIQMPDENGDCVTWMSVEHYYQAHKFIRVDD 474
Query: 500 PAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHL 559
P AQD VE+IK+A SPEEAAR+GRSMQ+Q P +RSDW+++KID+MYRALKCKFSIYP L
Sbjct: 475 PLAQDCVERIKSAISPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPQL 534
Query: 560 NSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLR 601
NSMLLST GSVLVEASPHDLFWG GR+GEGLNYLG+LLM+LR
Sbjct: 535 NSMLLSTAGSVLVEASPHDLFWGRGRDGEGLNYLGKLLMKLR 576
>gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 579
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/597 (74%), Positives = 502/597 (84%), Gaps = 35/597 (5%)
Query: 25 MAPSLVANSAPVFCKFS----------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA 74
MA S S+P+ C+ + A DAA+IRRAAD+A+ SAG TSPHPNFGC+IA
Sbjct: 1 MALSFRICSSPLICRATLSNGDNGRNHHAIDAAFIRRAADLAEMSAGLTSPHPNFGCVIA 60
Query: 75 TSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG 134
TS+GKVAGEGYLYAQGTKPAE AVEA G F RG+TAYLNMEPGDCHGDHTAVSALVQAG
Sbjct: 61 TSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGSTAYLNMEPGDCHGDHTAVSALVQAG 120
Query: 135 ITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRA 194
I RVVVGIR+PLQHLRG A+R LRSQG++V+VLGED +SK++EEARKSCLLVNAPLIHRA
Sbjct: 121 IDRVVVGIRHPLQHLRGSAIRELRSQGIEVNVLGEDFESKVLEEARKSCLLVNAPLIHRA 180
Query: 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAV 254
SRVPFSV KYAMTLD GKIAASSGHAAWISSK SR RVF+LRG SDAV
Sbjct: 181 CSRVPFSVLKYAMTLD------------GKIAASSGHAAWISSKLSRTRVFELRGGSDAV 228
Query: 255 VVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRK 314
+VGGNTVR+D+PRLTARHG GHTP RIV+TQ+L+LPE+ANLWDV++ TIVVTQRGAR+
Sbjct: 229 IVGGNTVRQDDPRLTARHGQGHTPTRIVMTQSLDLPEKANLWDVAEVSTIVVTQRGARKS 288
Query: 315 FQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFV 374
FQK+LAS+GVEVVEFD+LN R+VMEYFH RGYLSILWECGGTLAASAISS +IHKV AFV
Sbjct: 289 FQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWECGGTLAASAISSSVIHKVVAFV 348
Query: 375 APKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSED 434
APKIIGG AP+PV +LGMVEM+QAL+LID+CYEQVGPDML+SGFLQPIPDL+PVIPSED
Sbjct: 349 APKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLVSGFLQPIPDLLPVIPSED 408
Query: 435 ETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKF 494
T IDP+V P+EPSII+FYKTWD YG ++ +TWSSVEHYYQA+KF
Sbjct: 409 ATVEIDPSVDPFEPSIIFFYKTWDLYGKNDDY-------------MTWSSVEHYYQANKF 455
Query: 495 TGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFS 554
GV +P A D VEKI+TA+SPEEAA +GRS RQ P+ VR+DWE VKI++MY+ALKCKFS
Sbjct: 456 VGVENPMAHDCVEKIRTARSPEEAALIGRSTLRQKPELVRNDWEDVKIEVMYKALKCKFS 515
Query: 555 IYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
YPHL S+LLST GSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE+LGESS S
Sbjct: 516 TYPHLKSILLSTVGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEYLGESSVS 572
>gi|449442795|ref|XP_004139166.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis
sativus]
gi|449485406|ref|XP_004157158.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis
sativus]
Length = 605
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/567 (75%), Positives = 496/567 (87%), Gaps = 13/567 (2%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+A +IRRAA+IADKSAGFT+PHPN+GC+I TS+G VAGEG+LY QGT+ AE+QAV+A G
Sbjct: 42 EATFIRRAAEIADKSAGFTAPHPNYGCIITTSSGAVAGEGFLYGQGTESAELQAVQAAGE 101
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
CRGATA+LN+E DC D+TAV+ALVQAGI RVVVG+R+PLQHLRG AV+ALR+QG+ V
Sbjct: 102 RCRGATAFLNLESSDCPSDNTAVAALVQAGIERVVVGMRHPLQHLRGNAVKALRNQGVLV 161
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
VLGE+L+S+ +EEARK+CLLVNAPLI +A+SRVPFSV KYAMTLD GK
Sbjct: 162 DVLGEELKSRAVEEARKACLLVNAPLICKASSRVPFSVLKYAMTLD------------GK 209
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IAASSGHAAWISS +SR RVF LRGRSDAV+VGGNTVR+D+PRLTARHGGGH P+R+V++
Sbjct: 210 IAASSGHAAWISSVSSRRRVFQLRGRSDAVIVGGNTVRQDDPRLTARHGGGHIPLRVVMS 269
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+TLNLPE+AN+WD T+VVTQRG +R FQK LAS+GVEVVEFD LN RDVMEYFHDR
Sbjct: 270 RTLNLPEQANVWDTKGMSTMVVTQRGTKRSFQKLLASKGVEVVEFDNLNPRDVMEYFHDR 329
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G+LSILWECGGTLAASAI+ G+IH+V+AFVAPKIIGGKNAP+PV ELGMVEMSQAL+LID
Sbjct: 330 GFLSILWECGGTLAASAIAGGVIHEVYAFVAPKIIGGKNAPSPVGELGMVEMSQALELID 389
Query: 405 ICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFS 464
+ YE++G DML+SGFLQPI D+ PVIPS DETFAIDPTVTPYEPSII+FYKTWDPYGAFS
Sbjct: 390 VEYEKIGKDMLVSGFLQPILDVAPVIPSCDETFAIDPTVTPYEPSIIFFYKTWDPYGAFS 449
Query: 465 NFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGR 523
NFS HPI + D NG+ TW +VEHYYQAHKF G++DP AQD VEKIK+A+SPEEAAR+GR
Sbjct: 450 NFSRHPIHLTDENGNGCTWLTVEHYYQAHKFVGIDDPVAQDCVEKIKSARSPEEAARIGR 509
Query: 524 SMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGG 583
MQRQHP +RSDW + K+D MYRALKCKFS YPHL SMLLST GSVLVEASPHDLFWGG
Sbjct: 510 LMQRQHPKMIRSDWRTAKLDTMYRALKCKFSSYPHLKSMLLSTAGSVLVEASPHDLFWGG 569
Query: 584 GREGEGLNYLGRLLMQLRSEFLGESST 610
GR+GEGLNYLGRLLMQLR+EFLG+S+T
Sbjct: 570 GRDGEGLNYLGRLLMQLRAEFLGQSTT 596
>gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana]
gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 599
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/599 (71%), Positives = 495/599 (82%), Gaps = 30/599 (5%)
Query: 30 VANSAPVFCKFSRAE----------DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGK 79
+++S+P+ C+ + + DAA+IRRAAD+++ SAG TSPHPNFGC+IATS+GK
Sbjct: 7 ISSSSPLICRATLSNGDNSRNYHTTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGK 66
Query: 80 VAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVV 139
VAGEGYLYAQGTKPAE AVEA G F RGATAYLNMEPGDCHGDHTAVSALVQAGI RVV
Sbjct: 67 VAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPGDCHGDHTAVSALVQAGIERVV 126
Query: 140 VGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVP 199
VGIR+PLQHLRG A+R LRS G++V+VLGED +SK++E+ARKSCLLVNAPLIHRA SRVP
Sbjct: 127 VGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVP 186
Query: 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGN 259
FSV KYAMTLD GKIAASSGHAAWISSK SR RVF+LRG SDAV+VGGN
Sbjct: 187 FSVLKYAMTLD------------GKIAASSGHAAWISSKLSRTRVFELRGGSDAVIVGGN 234
Query: 260 TVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYL 319
TVR+D+PRLTARHG GHTP RIV+TQ+L+LPE+ANLWDVS+ TIVVTQRGAR+ FQK L
Sbjct: 235 TVRQDDPRLTARHGQGHTPTRIVMTQSLDLPEKANLWDVSEVSTIVVTQRGARKSFQKLL 294
Query: 320 ASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKII 379
AS+GVEVVEFD+LN R+VMEYFH RGYLSILWECGGTLAASAISS +IHKV AFVAPKII
Sbjct: 295 ASKGVEVVEFDMLNPREVMEYFHLRGYLSILWECGGTLAASAISSSVIHKVVAFVAPKII 354
Query: 380 GGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAI 439
GG AP+PV +LGMVEM+QAL+LID+CYEQVGPDML+SGFLQPIPDL+PVIPSED T I
Sbjct: 355 GGSKAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLVSGFLQPIPDLLPVIPSEDATVEI 414
Query: 440 DPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHY-------YQAH 492
DP+V P+EPSII+FYKTWD YG + N + V + S + +A+
Sbjct: 415 DPSVDPFEPSIIFFYKTWDLYGMW-NITIRYHTTVHVKWYLALSKKHNLLILHPKTLKAN 473
Query: 493 KFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCK 552
KF GV +P A D VEKI+TA+SPEEAA +GRS RQ P+ VR+DWE VKI++MY+ALKCK
Sbjct: 474 KFVGVENPKAYDCVEKIRTARSPEEAALIGRSTLRQKPELVRNDWEDVKIEVMYKALKCK 533
Query: 553 FSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
FS YPHL SMLLST G+VLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE+LGESS S
Sbjct: 534 FSTYPHLKSMLLSTIGTVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEYLGESSVS 592
>gi|449442793|ref|XP_004139165.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis
sativus]
Length = 693
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/599 (69%), Positives = 492/599 (82%), Gaps = 32/599 (5%)
Query: 33 SAPVFCKFSRAEDAA------------------YIRRAADIADKSAGFTSPHPNFGCLIA 74
S+P+ C FSR AA +IRRAA+IADKSAGFT+PHPN+GC++A
Sbjct: 8 SSPIIC-FSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVA 66
Query: 75 TSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG 134
T +G VAG+G+L+ QGTK AEVQAVE G +CRG TA+LN+EP +C GD AVSALVQAG
Sbjct: 67 TPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQAG 126
Query: 135 ITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRA 194
I RVVVG+++PLQHLRG AVRALRSQG+QV VLGEDLQS+ IEEA+K+CLLVNAPLI +A
Sbjct: 127 IKRVVVGMKHPLQHLRGNAVRALRSQGVQVDVLGEDLQSRDIEEAQKACLLVNAPLICKA 186
Query: 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAV 254
S+VPFSV KYAMTLD GKIAA++GH+AWISS TSR RV +LRGRSDA+
Sbjct: 187 ASQVPFSVLKYAMTLD------------GKIAATTGHSAWISSVTSRHRVSELRGRSDAI 234
Query: 255 VVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRK 314
VVGGNT+R+D+P+LTARHGGGHTP+R+V+++TL+LPEEA +WD S PT+V+TQRGA R
Sbjct: 235 VVGGNTIRKDDPKLTARHGGGHTPVRVVMSRTLDLPEEAKVWDTSSVPTMVLTQRGATRS 294
Query: 315 FQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFV 374
FQK LAS+GVEVVEFD LN RDV+EYFHDRGYLS+LWECGGTLAASAI+SG++HKVFAFV
Sbjct: 295 FQKLLASKGVEVVEFDNLNPRDVVEYFHDRGYLSVLWECGGTLAASAIASGIVHKVFAFV 354
Query: 375 APKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSED 434
APKIIGG+NAP+PV ELGMVEM+QAL+LID+ YE+V DM+ISGFLQPI D+ P+IPS D
Sbjct: 355 APKIIGGRNAPSPVGELGMVEMTQALELIDVQYEKVEEDMMISGFLQPISDVAPIIPSRD 414
Query: 435 ETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHK 493
ET A+DPTV YEPSII FY TWD YGA SNFSPH I + D GD TW +VEHYYQAHK
Sbjct: 415 ETLAVDPTVVSYEPSIISFYNTWDNYGALSNFSPHSIHIVDEIGDYSTWMTVEHYYQAHK 474
Query: 494 FTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKF 553
F GV+DP+AQ+ VEKIK+A SPEEA R+ R +Q+QHPD VRSDWE+ K D+MY+ALKCKF
Sbjct: 475 FVGVDDPSAQECVEKIKSASSPEEATRIARLLQKQHPDLVRSDWETAKFDVMYKALKCKF 534
Query: 554 SIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
S YP L SMLLST GS+LVE+SPHDL WGGGR GEGLNYLGRLLM+LR EFL S+ S+
Sbjct: 535 SSYPVLKSMLLSTAGSILVESSPHDLVWGGGRFGEGLNYLGRLLMKLRVEFLKSSTGSL 593
>gi|413936883|gb|AFW71434.1| hypothetical protein ZEAMMB73_137769 [Zea mays]
gi|416950698|gb|AFX59276.1| 5-amino-6-ribosylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate
reductase [Zea mays]
Length = 623
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/603 (67%), Positives = 485/603 (80%), Gaps = 21/603 (3%)
Query: 12 FPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGC 71
F L + + AP+ ++ P S A DA +RRAAD+AD+SAG TSPHPNFGC
Sbjct: 22 FLHPLLHTRHRVSTAPAAASSFVPA-SHSSHANDAMLLRRAADVADRSAGLTSPHPNFGC 80
Query: 72 LIA-------TSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDH 124
+IA ++ V GEG+LYAQGT AE+ A + G RG TAYLN+EPGDC GD+
Sbjct: 81 VIARPQLNTDSADSWVVGEGFLYAQGTPCAELLASQEAGEHARGGTAYLNLEPGDCFGDN 140
Query: 125 TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCL 184
TAV +LVQAGITRVVVG+R+PL+HLRG+A++ALR++G+QV V+GEDLQSK+ +EA KSCL
Sbjct: 141 TAVGSLVQAGITRVVVGLRHPLKHLRGKAIQALRNEGIQVDVVGEDLQSKLFKEALKSCL 200
Query: 185 LVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRV 244
VNAPL++RA VPFSV KYAMT D GKIAASSGHA+WIS K SR RV
Sbjct: 201 TVNAPLLYRAAFHVPFSVLKYAMTAD------------GKIAASSGHASWISGKASRGRV 248
Query: 245 FDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTI 304
F+LRGRSDAV+VGGNTVR D+PRLTARH GH P+RIV++Q+LNLPEEANLW+++DA TI
Sbjct: 249 FELRGRSDAVIVGGNTVRFDDPRLTARHVKGHVPVRIVMSQSLNLPEEANLWNLNDAYTI 308
Query: 305 VVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISS 364
V TQRGARR FQ+ LA +GVEVVEFD+LN R VM Y +DRGYL++LWECGGTLAASAIS+
Sbjct: 309 VATQRGARRDFQRKLAMKGVEVVEFDMLNPRAVMSYCYDRGYLAVLWECGGTLAASAISA 368
Query: 365 GLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
+IHKV+AF APKIIGG NAPTPV ELGM +M+QA++LID+ YEQ+ DML+SGF++PIP
Sbjct: 369 SVIHKVYAFWAPKIIGGLNAPTPVGELGMSQMTQAINLIDVSYEQIDRDMLMSGFIEPIP 428
Query: 425 DLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGD-VTWS 483
DL PVIPS +E +IDP V+PYE +II FYKTWD +GAFSNFSPH IQMPD NGD TW
Sbjct: 429 DLSPVIPSVEEIPSIDPEVSPYETNIISFYKTWDIFGAFSNFSPHSIQMPDENGDYFTWP 488
Query: 484 SVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKID 543
+VEHYYQAHKF GV++P A+D V++IK AKSPEEAAR+GR+ Q+ P+ VR+DWES KID
Sbjct: 489 TVEHYYQAHKFVGVDNPQARDIVQEIKLAKSPEEAARIGRTRQKGFPELVRTDWESTKID 548
Query: 544 IMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
+MYRA+KCKFS YPHL +MLLST GSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE
Sbjct: 549 VMYRAIKCKFSTYPHLTNMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 608
Query: 604 FLG 606
LG
Sbjct: 609 ILG 611
>gi|357142292|ref|XP_003572523.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Brachypodium
distachyon]
Length = 578
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/580 (68%), Positives = 473/580 (81%), Gaps = 21/580 (3%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGK-------VAGEGYLYAQGTKP 93
S A DA ++RRAAD+AD+SAG SPHPNFGC+IA + V GEGYLY+QGT
Sbjct: 4 SHAHDAHFLRRAADVADRSAGLASPHPNFGCVIARPQLETDDVEAWVVGEGYLYSQGTPC 63
Query: 94 AEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA 153
AE+ A E G RGATAYLN+EP DC+G+ TAVS+LVQAG+TRVVVG+R+PL+HLRG+A
Sbjct: 64 AELLAAEEAGEHARGATAYLNLEPDDCYGNSTAVSSLVQAGVTRVVVGLRHPLKHLRGKA 123
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
++ LR QG+QV V+GEDLQSK+ +EA SCL+VNAPL++RA VPFSV KYAMT D
Sbjct: 124 IQLLRHQGIQVDVVGEDLQSKLFKEALGSCLIVNAPLLYRAAFHVPFSVLKYAMTAD--- 180
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH- 272
GKIAAS+GHA+W+S K SR RVF+LRGRSDA++VGGNTVR DNPRLTARH
Sbjct: 181 ---------GKIAASTGHASWVSGKASRGRVFELRGRSDAIIVGGNTVRLDNPRLTARHV 231
Query: 273 GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL 332
GGH P+RIV++Q+ NLPEEANLW+V DA TIV TQRGARR QK LA +GVEVVEF++L
Sbjct: 232 KGGHVPVRIVMSQSFNLPEEANLWNVHDAYTIVATQRGARRDLQKKLAMKGVEVVEFEML 291
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N RDVM Y +DRGYLS+LWECGGTLAASAIS+ +IHKV+AF APKIIGG NAPTPV ELG
Sbjct: 292 NPRDVMSYCYDRGYLSVLWECGGTLAASAISARVIHKVYAFFAPKIIGGVNAPTPVGELG 351
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIY 452
M +M+QA+DLID+ YEQV DML+SGFLQPIPDL PVIPS DE ++DP V+PYE +II
Sbjct: 352 MKQMTQAIDLIDVSYEQVDRDMLMSGFLQPIPDLSPVIPSVDEIPSVDPEVSPYETNIIS 411
Query: 453 FYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHKFTGVNDPAAQDFVEKIKT 511
FYKTWD +GAF+NFSPHPI +PD NGD TW +VEHYYQAHKF V++P A+D V++IK
Sbjct: 412 FYKTWDTFGAFANFSPHPISLPDENGDCFTWPTVEHYYQAHKFVSVDNPQARDIVQEIKQ 471
Query: 512 AKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVL 571
A+SPEEAAR+GR+ QR+ P+ VRSDWES KID+MY+A+KCKFS +PHL MLLST GSVL
Sbjct: 472 ARSPEEAARIGRTRQRELPELVRSDWESTKIDVMYKAIKCKFSTHPHLTEMLLSTAGSVL 531
Query: 572 VEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
VEASPHDLFWGGGREGEGLNYLGRLLMQLRSE LG T+
Sbjct: 532 VEASPHDLFWGGGREGEGLNYLGRLLMQLRSEILGTVQTT 571
>gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
Japonica Group]
gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
Japonica Group]
Length = 622
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/580 (69%), Positives = 475/580 (81%), Gaps = 20/580 (3%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA-------TSTGKVAGEGYLYAQGTKP 93
S A DA +RRAAD AD+SAG TSPHPNFGC+IA + V GEG+LYAQGT
Sbjct: 49 SHAHDAVLLRRAADAADRSAGLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPC 108
Query: 94 AEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA 153
AE+ A + G RGATAYLN+EPGDC+GD TAVS LVQAGITRVVVG+R+PL+HLRG+A
Sbjct: 109 AELLAAQEAGEHARGATAYLNLEPGDCYGDSTAVSTLVQAGITRVVVGLRHPLKHLRGKA 168
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
+++LR++G+QV V+GEDL SK+ +EA KSCL+VNAPL++RA RVPFSV KYAMT D
Sbjct: 169 IQSLRNEGIQVDVVGEDLHSKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTAD--- 225
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273
GKIAASSGHA+W+S K+SR RVF+LRGRSDA++VGGNTVR D+PRLTARH
Sbjct: 226 ---------GKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHV 276
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
GH P+RIV++Q+LNLPEEANLW+V DA TIV TQRGARR QK LA +GVEVVEFD+LN
Sbjct: 277 KGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLN 336
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
RDVM Y +DRGYLS+LWECGGTLAASAIS+ +IHKV+AF+APKIIGG NAPTPV ELGM
Sbjct: 337 PRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGM 396
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYF 453
+M+QA+DLID+ YEQ+ DML+SGF+QPIPDL PVIPS DE ++DP V+PYE +II F
Sbjct: 397 NQMTQAIDLIDVSYEQIDRDMLMSGFIQPIPDLSPVIPSVDEMPSVDPEVSPYETNIISF 456
Query: 454 YKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTA 512
YKTWD +GAFSNFSPHPI MPD NGD TW +VEHYYQAHKF GV+DP A++ V++IK A
Sbjct: 457 YKTWDTFGAFSNFSPHPIHMPDENGDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLA 516
Query: 513 KSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLV 572
KSPEEAAR+GR+ QR+ + VR DW+S+KI++MYRA K KFS Y HL MLLST GSVLV
Sbjct: 517 KSPEEAARIGRTRQREFQELVRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLV 576
Query: 573 EASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
EASPHDLFWGGGREGEG+NYLGRLLMQLRSE LG T++
Sbjct: 577 EASPHDLFWGGGREGEGMNYLGRLLMQLRSEILGTIQTAV 616
>gi|357507789|ref|XP_003624183.1| Swarming motility protein ybiA [Medicago truncatula]
gi|355499198|gb|AES80401.1| Swarming motility protein ybiA [Medicago truncatula]
Length = 1648
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/492 (76%), Positives = 428/492 (86%), Gaps = 13/492 (2%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
+ A DA YIRRAA IADKSAGFTSPHPNFGC+IAT +G VAGEGYLYAQGT PAEVQAV
Sbjct: 28 NHALDAGYIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTSPAEVQAVT 87
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ G CRGATAYLNMEPGDC GD+TAVSAL+Q G+ RVV+G+R+PLQH RG AVRALRSQ
Sbjct: 88 SAGERCRGATAYLNMEPGDCDGDNTAVSALLQGGVKRVVIGMRHPLQHFRGNAVRALRSQ 147
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
GLQV +LGEDL SKIIE+A+K CLLVNAPLI RA+SRVPFSV KYAMTLD
Sbjct: 148 GLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLD---------- 197
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIAAS+GHA WIS K SR+ VF+LR RSDA++VGGNTVRRDNPRLTARHGGGH P+R
Sbjct: 198 --GKIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPRLTARHGGGHMPIR 255
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
IV++Q+L+LPEEANLWD+S+ TIVVTQRGARR QK LAS+GVEVVEFDILN RDVMEY
Sbjct: 256 IVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVVEFDILNPRDVMEY 315
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
F+DRGYLS+ WECGGTLAASAISSG+IHKV+AFVAPKIIGGKNAP+PV +LGMVEMSQA+
Sbjct: 316 FYDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQAI 375
Query: 401 DLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPY 460
+LID+CY+QVGPDML+SGFLQP+PD P IPS +ETF DP+V+PYE SII+FYKTWDP+
Sbjct: 376 NLIDVCYQQVGPDMLVSGFLQPLPDTAPTIPSPEETFIADPSVSPYESSIIFFYKTWDPH 435
Query: 461 GAFSNFSPHPIQMPDVNG-DVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAA 519
GA SNFSPHPIQMPD NG +VTW SVEHYYQAHKF GV+D A+D +EKIK+ KSPEEAA
Sbjct: 436 GALSNFSPHPIQMPDENGENVTWLSVEHYYQAHKFVGVDDATAKDCLEKIKSVKSPEEAA 495
Query: 520 RLGRSMQRQHPD 531
R+GRS+QRQ PD
Sbjct: 496 RIGRSIQRQRPD 507
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 65/69 (94%)
Query: 533 VRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNY 592
+R DW+++KID+MY ALKCKFS YPHL+SMLLST GSVLVEASPHDLFWGGGREGEGLNY
Sbjct: 1561 LRPDWDNMKIDVMYSALKCKFSTYPHLSSMLLSTAGSVLVEASPHDLFWGGGREGEGLNY 1620
Query: 593 LGRLLMQLR 601
LGRLLM+LR
Sbjct: 1621 LGRLLMKLR 1629
>gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group]
gi|113536367|dbj|BAF08750.1| Os02g0473000, partial [Oryza sativa Japonica Group]
Length = 490
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/496 (70%), Positives = 418/496 (84%), Gaps = 13/496 (2%)
Query: 118 GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
GDC+GD TAVS LVQAGITRVVVG+R+PL+HLRG+A+++LR++G+QV V+GEDL SK+ +
Sbjct: 1 GDCYGDSTAVSTLVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLHSKLFK 60
Query: 178 EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISS 237
EA KSCL+VNAPL++RA RVPFSV KYAMT D GKIAASSGHA+W+S
Sbjct: 61 EALKSCLIVNAPLLYRAAFRVPFSVLKYAMTAD------------GKIAASSGHASWVSG 108
Query: 238 KTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWD 297
K+SR RVF+LRGRSDA++VGGNTVR D+PRLTARH GH P+RIV++Q+LNLPEEANLW+
Sbjct: 109 KSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHVKGHVPVRIVMSQSLNLPEEANLWN 168
Query: 298 VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTL 357
V DA TIV TQRGARR QK LA +GVEVVEFD+LN RDVM Y +DRGYLS+LWECGGTL
Sbjct: 169 VHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTL 228
Query: 358 AASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
AASAIS+ +IHKV+AF+APKIIGG NAPTPV ELGM +M+QA+DLID+ YEQ+ DML+S
Sbjct: 229 AASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLIDVSYEQIDRDMLMS 288
Query: 418 GFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVN 477
GF+QPIPDL PVIPS DE ++DP V+PYE +II FYKTWD +GAFSNFSPHPI MPD N
Sbjct: 289 GFIQPIPDLSPVIPSVDEMPSVDPEVSPYETNIISFYKTWDTFGAFSNFSPHPIHMPDEN 348
Query: 478 GD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSD 536
GD TW +VEHYYQAHKF GV+DP A++ V++IK AKSPEEAAR+GR+ QR+ + VR D
Sbjct: 349 GDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLAKSPEEAARIGRTRQREFQELVRPD 408
Query: 537 WESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRL 596
W+S+KI++MYRA K KFS Y HL MLLST GSVLVEASPHDLFWGGGREGEG+NYLGRL
Sbjct: 409 WDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLVEASPHDLFWGGGREGEGMNYLGRL 468
Query: 597 LMQLRSEFLGESSTSI 612
LMQLRSE LG T++
Sbjct: 469 LMQLRSEILGTIQTAV 484
>gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group]
Length = 558
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/580 (63%), Positives = 433/580 (74%), Gaps = 65/580 (11%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA-------TSTGKVAGEGYLYAQGTKP 93
S A DA +RRAAD AD+SAG TSPHPNFGC+IA + V GEG+LYAQGT
Sbjct: 30 SHAHDAVLLRRAADAADRSAGLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPC 89
Query: 94 AEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA 153
AE+ A + G RGATAYLN+EPGDC+GD TAVS LV
Sbjct: 90 AELLAAQEAGEHARGATAYLNLEPGDCYGDSTAVSTLV---------------------- 127
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
+EA KSCL+VNAPL++RA RVPFSV KYAMT D
Sbjct: 128 -----------------------QEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTAD--- 161
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273
GKIAASSGHA+W+S K+SR RVF+LRGRSDA++VGGNTVR D+PRLTARH
Sbjct: 162 ---------GKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHV 212
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
GH P+RIV++Q+LNLPEEANLW+V DA TIV TQRGARR QK LA +GVEVVEFD+LN
Sbjct: 213 KGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLN 272
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
RDVM Y +DRGYLS+LWECGGTLAASAIS+ +IHKV+AF+APKIIGG NAPTPV ELGM
Sbjct: 273 PRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGM 332
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYF 453
+M+QA+DLID+ YEQ+ DML+SGF+QPIPDL PVIPS DE ++DP V+PYE +II F
Sbjct: 333 NQMTQAIDLIDVSYEQIDRDMLMSGFIQPIPDLSPVIPSVDEMPSVDPEVSPYETNIISF 392
Query: 454 YKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTA 512
YKTWD +GAFSNFSPHPI MPD NGD TW +VEHYYQAHKF GV+DP A++ V++IK A
Sbjct: 393 YKTWDTFGAFSNFSPHPIHMPDENGDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLA 452
Query: 513 KSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLV 572
KSPEEAAR+GR+ QR+ + VR DW+S+KI++MYRA K KFS Y HL MLLST GSVLV
Sbjct: 453 KSPEEAARIGRTRQREFQELVRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLV 512
Query: 573 EASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
EASPHDLFWGGGREGEG+NYLGRLLMQLRSE LG T++
Sbjct: 513 EASPHDLFWGGGREGEGMNYLGRLLMQLRSEILGTIQTAV 552
>gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group]
Length = 577
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/580 (63%), Positives = 433/580 (74%), Gaps = 65/580 (11%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA-------TSTGKVAGEGYLYAQGTKP 93
S A DA +RRAAD AD+SAG TSPHPNFGC+IA + V GEG+LYAQGT
Sbjct: 49 SHAHDAVLLRRAADAADRSAGLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPC 108
Query: 94 AEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA 153
AE+ A + G RGATAYLN+EPGDC+GD TAVS LV
Sbjct: 109 AELLAAQEAGEHARGATAYLNLEPGDCYGDSTAVSTLV---------------------- 146
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
+EA KSCL+VNAPL++RA RVPFSV KYAMT D
Sbjct: 147 -----------------------QEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTAD--- 180
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273
GKIAASSGHA+W+S K+SR RVF+LRGRSDA++VGGNTVR D+PRLTARH
Sbjct: 181 ---------GKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHV 231
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
GH P+RIV++Q+LNLPEEANLW+V DA TIV TQRGARR QK LA +GVEVVEFD+LN
Sbjct: 232 KGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLN 291
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
RDVM Y +DRGYLS+LWECGGTLAASAIS+ +IHKV+AF+APKIIGG NAPTPV ELGM
Sbjct: 292 PRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGM 351
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYF 453
+M+QA+DLID+ YEQ+ DML+SGF+QPIPDL PVIPS DE ++DP V+PYE +II F
Sbjct: 352 NQMTQAIDLIDVSYEQIDRDMLMSGFIQPIPDLSPVIPSVDEMPSVDPEVSPYETNIISF 411
Query: 454 YKTWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTA 512
YKTWD +GAFSNFSPHPI MPD NGD TW +VEHYYQAHKF GV+DP A++ V++IK A
Sbjct: 412 YKTWDTFGAFSNFSPHPIHMPDENGDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLA 471
Query: 513 KSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLV 572
KSPEEAAR+GR+ QR+ + VR DW+S+KI++MYRA K KFS Y HL MLLST GSVLV
Sbjct: 472 KSPEEAARIGRTRQREFQELVRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLV 531
Query: 573 EASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
EASPHDLFWGGGREGEG+NYLGRLLMQLRSE LG T++
Sbjct: 532 EASPHDLFWGGGREGEGMNYLGRLLMQLRSEILGTIQTAV 571
>gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 598
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/582 (59%), Positives = 430/582 (73%), Gaps = 19/582 (3%)
Query: 33 SAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTK 92
SA + ++D+ ++ RAA++A AG ++PHPNFGC+IA KV GEG+LYAQGTK
Sbjct: 13 SAQLSTSIPSSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGP-KVVGEGFLYAQGTK 71
Query: 93 PAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQ 152
AEVQAVE G + ATAYLN+EPGDCHGD +AV AL +AG++RVVVG+ +PLQHL G+
Sbjct: 72 SAEVQAVERAGELAKNATAYLNLEPGDCHGDDSAVRALREAGVSRVVVGVPHPLQHLHGK 131
Query: 153 AVRALRSQGLQVHVLGEDL--QSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
A++AL G +V V+G++L I+EA K+C LVNAPL++RA + +P+S+ KYAMT+D
Sbjct: 132 AIKALHQGGAKVEVVGQNLLESGSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVD 191
Query: 211 VILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA 270
GKIAAS+GH+ W+SS SR RVF++R RSDA+VVGGNTVRRDNPRLT
Sbjct: 192 ------------GKIAASTGHSTWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTT 239
Query: 271 RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
R GGH P+RIV+++ LNLP +ANLWDVS TIV TQ+GAR+ FQ LASRGVEVVEFD
Sbjct: 240 RQEGGHLPVRIVMSRCLNLPMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFD 299
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
L R VM+Y ++RGYLSILWECGG L+A AI+SG+I KV AF++PKIIGG APTPV E
Sbjct: 300 FLTPRAVMDYCYNRGYLSILWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGE 359
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDE-TFAIDPTV--TPYE 447
LGMVEM+QAL L D+ +EQVGPDML++G LQPIP P +P+ E A+D T+ P
Sbjct: 360 LGMVEMTQALQLSDVAFEQVGPDMLVTGLLQPIPHCQPNVPALVEAAAAMDSTIPSLPQR 419
Query: 448 PSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHKFTGVNDPAAQDFV 506
P +IYFYK WDPYGA SNFSPHPI +PD G V +W+SVEHYYQA KF GV AQ+ V
Sbjct: 420 PQVIYFYKPWDPYGALSNFSPHPISLPDETGAVISWNSVEHYYQAQKFVGVKHELAQECV 479
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
I+ AKSPE AARLGR++ RQ PD VR+DW K+ M AL KF+ YP L +LL+T
Sbjct: 480 HNIRLAKSPEVAARLGRTLARQRPDLVRADWAVAKLCAMETALHAKFTSYPALRDLLLTT 539
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
G+VLVEAS +D+FWG GR G+G N LG LLMQLR++ L S
Sbjct: 540 AGAVLVEASQNDMFWGAGRSGDGENKLGLLLMQLRTKLLQRS 581
>gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
Length = 563
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/568 (58%), Positives = 428/568 (75%), Gaps = 24/568 (4%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ ++ RAA++AD SAG T+PHPN C+IA S KV GE +LY QGT+ AE+QAVE G
Sbjct: 9 DSFHMLRAAELADGSAGHTAPHPNSACVIARSE-KVVGEAFLYGQGTRCAEIQAVEMAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGATAYLN+EPGDCHGD TA+ AL Q+G+ RVVVG+++PL+H G+A+ ALR G+ V
Sbjct: 68 LSRGATAYLNLEPGDCHGDDTAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIPV 127
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
VL E +EA ++C VNAPL++RAT VPFS+ KYAMTLD GK
Sbjct: 128 DVL-EKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLD------------GK 174
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IAAS+GHA+W+SSK SR RVF+ RGRSDA++VGGNTVRRDNPRLT R GGH P+R+V++
Sbjct: 175 IAASTGHASWVSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREGGHLPVRVVMS 234
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+TLNLP E +LWDVS+A TIV+TQRGARR+FQ+ L +RGVEVVEFD L + VM+Y ++R
Sbjct: 235 RTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYER 294
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G+L++LWECGG L+A A+++G+IHKV AFVAPKIIGG APTPV ELGMVEM+QAL+L+D
Sbjct: 295 GFLTVLWECGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLD 354
Query: 405 ICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTP----YEPSIIYFYKTWDPY 460
+ +EQVGPDML+SG+L+PIP + S +A DP++ ++IYFYK+WDPY
Sbjct: 355 VTFEQVGPDMLVSGYLKPIPRM----KSPASAYADDPSIADAGIFSSSTVIYFYKSWDPY 410
Query: 461 GAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAAR 520
GAF+NF+ H I++P TW SVEHYYQA KF+GV D A +E I+ A+SPEEAAR
Sbjct: 411 GAFTNFTAHSIKLP--GSSETWKSVEHYYQAQKFSGVEDELAMQAIENIRNAESPEEAAR 468
Query: 521 LGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLF 580
+GR + R+ PD VR DWE+ K+D+M AL KFS YP L S+LLST G VL+E+SPHD F
Sbjct: 469 IGRRLARERPDLVRPDWENSKMDVMEEALVAKFSSYPQLRSLLLSTAGCVLIESSPHDYF 528
Query: 581 WGGGREGEGLNYLGRLLMQLRSEFLGES 608
WG G++G G N LGRLLM+LR+ L E+
Sbjct: 529 WGSGKDGTGQNQLGRLLMKLRAAILTEN 556
>gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
Length = 561
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/568 (59%), Positives = 428/568 (75%), Gaps = 24/568 (4%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ ++ RAA++AD SAG T+PHPN C+IA S KV GE +LY QGT+ AE+QAVE G
Sbjct: 9 DSFHMLRAAELADGSAGHTAPHPNSACVIARSE-KVVGEAFLYGQGTRCAEIQAVEMAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGATAYLN+EPGDCHGD TA+ AL Q+G+ RVVVG+++PL+H G+A+ ALR G+ V
Sbjct: 68 LSRGATAYLNLEPGDCHGDDTAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIPV 127
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
VL E +EA ++C VNAPL++RAT VPFS+ KYAMTLD GK
Sbjct: 128 DVL-EKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLD------------GK 174
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IAAS+GHA+W+SSK SR RVF+ RGRSDA++VGGNTVRRDNPRLT R GGH P+R+V++
Sbjct: 175 IAASTGHASWVSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEGGHLPVRVVMS 234
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+TLNLP E +LWDVS+A TIV+TQRGARR+FQ+ L +RGVEVVEFD L + VM+Y ++R
Sbjct: 235 RTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYER 294
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G+LS+LWECGG L+A A+++G+IHKV AFVAPKIIGG APTPV ELGMVEM+QAL+L+D
Sbjct: 295 GFLSVLWECGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLD 354
Query: 405 ICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTP----YEPSIIYFYKTWDPY 460
+ +EQVGPDML+SG+L+PIP + S +A DP++ ++IYFYK+WDPY
Sbjct: 355 VTFEQVGPDMLVSGYLKPIPRM----KSPASAYADDPSIADAGIFSSSTVIYFYKSWDPY 410
Query: 461 GAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAAR 520
GAF+NF+ H I++P TW SVEHYYQA KF+GV D A +E I+ A+SPEEAAR
Sbjct: 411 GAFTNFTAHSIKLP--GSSETWKSVEHYYQAQKFSGVEDELAMQAIENIRNAESPEEAAR 468
Query: 521 LGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLF 580
+GR + R+ PD VR DWE+ K+D+M AL KFS YP L S+LLST G VL+E+SPHD F
Sbjct: 469 IGRRLARERPDLVRPDWENSKMDVMEEALVAKFSSYPQLRSLLLSTAGCVLIESSPHDYF 528
Query: 581 WGGGREGEGLNYLGRLLMQLRSEFLGES 608
WG G++G G N LGRLLM+LR+ L E+
Sbjct: 529 WGSGKDGTGQNQLGRLLMKLRATILTEN 556
>gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/391 (73%), Positives = 335/391 (85%), Gaps = 1/391 (0%)
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIAASSGHA+W+S K+SR RVF+LRGRSDA++VGGNTVR D+PRLTARH GH P+RIV
Sbjct: 5 GKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHVKGHVPVRIV 64
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
++Q+LNLPEEANLW+V DA TIV TQRGARR QK LA +GVEVVEFD+LN RDVM Y +
Sbjct: 65 MSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCY 124
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
DRGYLS+LWECGGTLAASAIS+ +IHKV+AF+APKIIGG NAPTPV ELGM +M+QA+DL
Sbjct: 125 DRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDL 184
Query: 403 IDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGA 462
ID+ YEQ+ DML+SGF+QPIPDL PVIPS DE ++DP V+PYE +II FYKTWD +GA
Sbjct: 185 IDVSYEQIDRDMLMSGFIQPIPDLSPVIPSVDEMPSVDPEVSPYETNIISFYKTWDTFGA 244
Query: 463 FSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARL 521
FSNFSPHPI MPD NGD TW +VEHYYQAHKF GV+DP A++ V++IK AKSPEEAAR+
Sbjct: 245 FSNFSPHPIHMPDENGDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLAKSPEEAARI 304
Query: 522 GRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFW 581
GR+ QR+ + VR DW+S+KI++MYRA K KFS Y HL MLLST GSVLVEASPHDLFW
Sbjct: 305 GRTRQREFQELVRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLVEASPHDLFW 364
Query: 582 GGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
GGGREGEG+NYLGRLLMQLRSE LG T++
Sbjct: 365 GGGREGEGMNYLGRLLMQLRSEILGTIQTAV 395
>gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 315/566 (55%), Positives = 392/566 (69%), Gaps = 21/566 (3%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+A++ +A ++A+ S G T+PHP FGC+IA V G G + AEVQAVE
Sbjct: 1 DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGA-RSAEVQAVEEARE 59
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGATA+L++EPGDC GD A++ALVQ G+ RVVVG+R+PL H RG+A+ ALR G++V
Sbjct: 60 QARGATAFLSLEPGDCGGDDAAIAALVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119
Query: 165 HVLGEDLQSKI-IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V GED IE A K+C NAPL++R + +P S KYAMTLD G
Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLD------------G 167
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAASSGH+AW+SS SR RV R +SDAV+VGGNTVR DNP LT R GGH P RIV+
Sbjct: 168 KIAASSGHSAWVSSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTRLEGGHQPDRIVM 227
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP +ANLWDVS A TIV+TQ+G+ +FQK L SRGVEVVEFD L+ R VME+ +
Sbjct: 228 SRALDLPRDANLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYM 287
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RGYLS+LWECGG L+A AI G++HKV AF+APKI+GG A TPV ELGMV+M+QAL L
Sbjct: 288 RGYLSVLWECGGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKLS 347
Query: 404 DICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAI---DPTVTPYEPSIIYFYKTWDPY 460
D+ +EQ GPDML++G+L PIPD + +D+ +I + V P +PSII F K WD Y
Sbjct: 348 DVAFEQTGPDMLVTGYLHPIPD---ISHGDDKLASISRENVAVIPNKPSIIRFNKPWDRY 404
Query: 461 GAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAA 519
GA S S HPI +PD G+ V WSSVEHYYQA KF GVND A ++ +I+ A+SPEEAA
Sbjct: 405 GALSTLSYHPITLPDSIGNPVVWSSVEHYYQASKFAGVNDQLAIQYIAEIQGAESPEEAA 464
Query: 520 RLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDL 579
RLG ++ Q PD VR DW+ VK +M AL+ KF YP L S LLST GSVLVE+S +D
Sbjct: 465 RLGETLSSQRPDLVRKDWDVVKFQVMRTALQAKFLAYPALKSFLLSTEGSVLVESSQNDS 524
Query: 580 FWGGGREGEGLNYLGRLLMQLRSEFL 605
WG G GLN+LGRLLM LR E L
Sbjct: 525 LWGASINGVGLNHLGRLLMDLRGEIL 550
>gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 602
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 308/566 (54%), Positives = 395/566 (69%), Gaps = 21/566 (3%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED+ ++ +A ++A +S G T+PHP FGC++ V L G +PAEVQAVE G
Sbjct: 18 EDSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTG-GLSGLGARPAEVQAVEEAG 76
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ RGATA+LN+EPGDC GD AV+ALV+ G+ R+VVG+R+PL H RG+A+ AL+S G++
Sbjct: 77 EYARGATAFLNLEPGDCGGDDAAVAALVRGGLERIVVGMRHPLPHFRGKAIAALQSAGVK 136
Query: 164 VHVLGEDLQ-SKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V GED IE A K+C L NAPL++RA+ +P S KYAMTLD
Sbjct: 137 VDVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLKYAMTLD------------ 184
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIAASSGH+AW+SS SR RVF+ R + DAV+VGGNTVR DNP LT R GGH P RIV
Sbjct: 185 GKIAASSGHSAWVSSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAGGHQPDRIV 244
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+T+T+NLP EANLWD S+A TIV+T++GA +FQK+LASRGVEVV+FD+++ R VME+ +
Sbjct: 245 ITRTMNLPREANLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISPRAVMEHCY 304
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
RGYLS+LWECGG L+A AI G+IHKV AF+APK++GG APTPV ELG V+M+QAL L
Sbjct: 305 SRGYLSVLWECGGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVGELGFVQMTQALKL 364
Query: 403 IDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAI---DPTVTPYEPSIIYFYKTWDP 459
D+ +E GPDML++G+LQP+ D+ + S DE I D P + S+I F K WD
Sbjct: 365 SDVSFELTGPDMLVTGYLQPLSDIS--LDSNDELTCISRGDIAELPSKVSVIPFNKPWDR 422
Query: 460 YGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEA 518
YGA S S HPI +PD +G V WSSVEHYYQA KF G+ND A +I +SP EA
Sbjct: 423 YGALSTLSYHPITIPDFDGKPVLWSSVEHYYQASKFAGMNDQLAVQCKAEILGTESPVEA 482
Query: 519 ARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHD 578
AR+G ++ RQ PD +R DW++VK+ +M AL+ KF YP L S+LLST GSVLVE+ D
Sbjct: 483 ARIGETLSRQRPDLLRKDWDAVKLQVMRTALQAKFLAYPALKSLLLSTEGSVLVESLQSD 542
Query: 579 LFWGGGREGEGLNYLGRLLMQLRSEF 604
+ R G GLN +GRLLM LR+E
Sbjct: 543 SLYVASRNGVGLN-VGRLLMDLRAEI 567
>gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
Length = 522
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 309/507 (60%), Positives = 376/507 (74%), Gaps = 63/507 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIA-------TSTGKVAGEGYLYAQGTKPAE 95
A DA +RRAAD+AD+SAG TSPHPNFGC+IA ++ V GEG+LYAQGT AE
Sbjct: 52 ANDALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAE 111
Query: 96 VQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVR 155
+ A + G G+TAYLN+EPGDC GD+TAV +LVQAGITRVVVG+R+PL+HLRG+A++
Sbjct: 112 LLAAQEAGEHACGSTAYLNLEPGDCFGDNTAVGSLVQAGITRVVVGLRHPLKHLRGKAIQ 171
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
ALRS+G+QV V+GEDLQSK+ EEA KSCL VNAPL++RA VPFSV KYAMT D
Sbjct: 172 ALRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTAD----- 226
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275
GKIAASSGHA+WIS K SR RVF+LRGRSDAV+VGGNTVR D+PRLTARH G
Sbjct: 227 -------GKIAASSGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTARHVKG 279
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
H P+RIV++Q+LNLP+EANLW+V+DA TIV TQRGARR FQK LA +GVEVVEFD+LN R
Sbjct: 280 HVPVRIVMSQSLNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPR 339
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+VM Y +DRGYL++LWECGGTLAASAI++ +IHK
Sbjct: 340 NVMSYCYDRGYLAVLWECGGTLAASAIAASVIHK-------------------------- 373
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYK 455
Q+ DML+SGF++PIPDL PVIPS +E ++DP V+PYE +II FYK
Sbjct: 374 -------------QIDRDMLMSGFIEPIPDLSPVIPSVEEIPSVDPEVSPYEANIISFYK 420
Query: 456 TWDPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKS 514
TWD +GAFSNFSPHPI MPD NGD TW +VE+YYQAHKF GV++P A+D V++IK AKS
Sbjct: 421 TWDIFGAFSNFSPHPIHMPDENGDYFTWPTVEYYYQAHKFVGVDNPQARDIVQEIKLAKS 480
Query: 515 PEEAARLGRSMQRQHPDWVRSDWESVK 541
PEEAAR+GR+ Q+ P+ WE +K
Sbjct: 481 PEEAARIGRTRQKGFPEL----WEVMK 503
>gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/482 (59%), Positives = 359/482 (74%), Gaps = 19/482 (3%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
++D ++ RAA++A+ SAG T+PHPNFGC+IA K GEG+LYAQGTK AEV AVE
Sbjct: 36 SDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGP-KSVGEGFLYAQGTKSAEVLAVERA 94
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G + ATAYLN+EPGDCHGD +AV AL QAG++RVV+GI +PLQHL G+A+ ALR G+
Sbjct: 95 GELAKNATAYLNLEPGDCHGDASAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQGGV 154
Query: 163 QVHVLGEDLQS--KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
V V G++L +EA K+C LVNAP + RA + +P+S+ KYA+T+D
Sbjct: 155 HVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVD---------- 204
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA S+GH+ W+SS SR RVF+ R RSDAV+VGGNTVRRDNPRLT R GG+ P+R
Sbjct: 205 --GKIATSTGHSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEGGNLPVR 262
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
IV+++ LNLP++ANLWDVS TIV+TQ+GA FQK LAS+GVEVVEFD+L R VME+
Sbjct: 263 IVMSRCLNLPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEH 322
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+DRG+LS+LWECGGTLAA AI+SG I KV AF++PKIIGG APTPV ELGM EM+QAL
Sbjct: 323 CYDRGFLSVLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQAL 382
Query: 401 DLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDET-FAIDPTV--TPYEPSIIYFYKTW 457
L D+ +EQ+GPDML++GFLQ IP +P + + E A D ++ +P P +I+FYK W
Sbjct: 383 QLSDVAFEQIGPDMLMTGFLQAIPSCLPEVTAVGEAGAAFDASIASSPQRPKVIHFYKPW 442
Query: 458 DPYGAFSNFSPHPIQMPDVNGD-VTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPE 516
DPYGA SNFSPHPI +P+ N V+W SVEHYYQA KF GV D A+DF+ KI+ AK PE
Sbjct: 443 DPYGALSNFSPHPISLPNENETIVSWKSVEHYYQAQKFAGVRDSLAEDFIHKIRRAKCPE 502
Query: 517 EA 518
EA
Sbjct: 503 EA 504
>gi|384253775|gb|EIE27249.1| riboflavin biosynthesis p, partial [Coccomyxa subellipsoidea C-169]
Length = 574
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 295/566 (52%), Positives = 373/566 (65%), Gaps = 35/566 (6%)
Query: 60 AGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGD 119
AG T PHPN GC++ G+V E + AQGT+ AEVQA++ G R AT Y N+E GD
Sbjct: 1 AGLTQPHPNAGCVLVGPDGRVLAETFQRAQGTESAEVQALQQAGPSARRATVYTNLETGD 60
Query: 120 CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL---GEDLQSKII 176
CHGD T+V+AL+ AG+ RVV+GIR+PL HLRG+AVRALRS G+ V +L G +
Sbjct: 61 CHGDDTSVAALIHAGVRRVVLGIRHPLAHLRGKAVRALRSSGVTVDILEDAGSSADPDRL 120
Query: 177 EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWIS 236
EE ++CL VN L+HRA + PFSV KYAMT D GKIA S GH+AW+S
Sbjct: 121 EECLRACLQVNEALLHRAVTGRPFSVLKYAMTAD------------GKIATSMGHSAWVS 168
Query: 237 SKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLW 296
S SR VF+ R RSDAV+VGGNTVRRDNPRLT R GGH P+RIV+++TL+LP++ANLW
Sbjct: 169 SPASRQLVFEARARSDAVIVGGNTVRRDNPRLTTRREGGHAPVRIVMSRTLDLPQDANLW 228
Query: 297 DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGT 356
DVS APTIV+TQRGAR+ FQ+ L SRGVEVV+FD L V Y +RG+L +LWECGGT
Sbjct: 229 DVSSAPTIVMTQRGARKDFQEMLQSRGVEVVQFDFLTPEAVAAYCQERGFLQVLWECGGT 288
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
LAA AI++G++HK AF+APK+IGG AP+PV ELG VEM+QAL L D ++ VGPDML+
Sbjct: 289 LAAPAIAAGVVHKALAFIAPKLIGGVRAPSPVGELGNVEMTQALTLADTQWQAVGPDMLL 348
Query: 417 SGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPD- 475
+G L P PS+ + + FYK+WD YG+ SNFS HP+ +PD
Sbjct: 349 TGALLCS---APYCPSQRKDSVLTAVFAHSWLQCAEFYKSWDRYGSLSNFSAHPVSLPDG 405
Query: 476 ---VNGDV------TWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQ 526
+G + W SVEH+YQA KF GV A VE+I A SPEEAAR+GR +
Sbjct: 406 PVSASGSLPDEPLREWPSVEHFYQAQKFAGVQHAEALAVVERIAAAGSPEEAARIGRGTE 465
Query: 527 RQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST------GGSV-LVEASPHDL 579
R P +R DW + K+ +MY L+ KF + ++LL T GG + LVEASPHD
Sbjct: 466 RGEPTLLRPDWVTAKLAVMYAGLRAKFVAHSGPRALLLETAEEGSAGGPLDLVEASPHDF 525
Query: 580 FWGGGREGEGLNYLGRLLMQLRSEFL 605
FWG G +G G N+LG LLM +R E +
Sbjct: 526 FWGRGVDGSGANHLGTLLMSIRDELI 551
>gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125, partial [Chlorella
variabilis]
Length = 697
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 293/626 (46%), Positives = 365/626 (58%), Gaps = 97/626 (15%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ-GTKPAEVQAVEA 101
A+D ++ RAA+++ + G T PHP GC++ +S G E +AQ GT+ E A
Sbjct: 13 AKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLVSSEGVPLAEASQWAQQGTEAPECAAARQ 72
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G G TAYLN+E GDCHGD AV AL AG+ RVVVG+R+PL HLRG A+ LR+ G
Sbjct: 73 AGGAAAGGTAYLNLECGDCHGDRAAVDALAGAGVARVVVGMRHPLPHLRGTALAQLRAAG 132
Query: 162 LQVHVLGE-----DLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L+V VLGE + + E A +CL N L+HRA + P + KYAMTLD
Sbjct: 133 LRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLLKYAMTLD------ 186
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276
GKIA +GH+AW+SS SR RVF+ R RSDAV+VGG TVRRDNP+LT R GGH
Sbjct: 187 ------GKIATHTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREGGH 240
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
PMRIV+++TL+LP EA LWDVS APT+V TQRGARR FQ L RGVEV+EFD L
Sbjct: 241 QPMRIVMSRTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLTPDA 300
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V Y +DRG+L LWECGG LAA AI++G IHK AFVAPK+IGG APTPV +LG VEM
Sbjct: 301 VARYCYDRGFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGFVEM 360
Query: 397 SQALDLIDICYEQVGPDMLISGFL-------QPIPDLMPVIPSEDETFAIDPTVTPYEPS 449
+QAL L ++ ++QVGPD++++G+L P L P
Sbjct: 361 TQALPLSEVRWQQVGPDLMLTGYLPHGRAPRHPGSRLAPA-------------------G 401
Query: 450 IIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVT---------------------------- 481
+ FYK WD YG FSNFSPH I MP+ G +T
Sbjct: 402 VAEFYKAWDRYGCFSNFSPHAISMPE--GAMTPARAQQLHQQAQQAQQQQQACGGGQAAG 459
Query: 482 ---WSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWE 538
W S EHYYQ+ KF GV P AQ V I A+SPEEAARLGR +RQ D +R DW
Sbjct: 460 LHRWPSTEHYYQSQKFAGVAHPEAQALVAAIAAARSPEEAARLGRRAERQRQDLLRPDWA 519
Query: 539 SVKIDIMYRALKCKFSIYPHLNSMLLST----------GGSV----------LVEASPHD 578
+ K +M AL+ KF+ + +LL+T GG+ +VE SP+D
Sbjct: 520 ASKPAVMLAALRAKFTQHDGPRRVLLATARNCGGRGCDGGTAASGGEHLGLEIVETSPND 579
Query: 579 LFWGGGREGEGLNYLGRLLMQLRSEF 604
FWG G G G N LG+LLMQ+R E
Sbjct: 580 FFWGRGYNGTGSNMLGKLLMQVRREM 605
>gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlamydomonas reinhardtii]
gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlamydomonas reinhardtii]
Length = 684
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 287/577 (49%), Positives = 364/577 (63%), Gaps = 43/577 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGK-VAGEGYLYAQGTKPAEVQAVEAGG 103
D A++ AA +A G T PHPN C + G+ V + +L AQGT AEV AV A G
Sbjct: 46 DYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAVSAAG 105
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RG TAYLN+EPGDCHG+ AV ALV++G++RVVVG+R+PL+HLR + + LR+ GL+
Sbjct: 106 PAARGGTAYLNLEPGDCHGEGAAVEALVRSGVSRVVVGLRHPLRHLRSRGIGLLRNAGLR 165
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +G L + + R + + P RA R P V KYAMTLD G
Sbjct: 166 VGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLD------------G 213
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + GH+AW+SS SR VF+ R RSDAV+VGGNTVRRDNPRLT R GGHTP RIV+
Sbjct: 214 KIATNLGHSAWVSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREGGHTPARIVM 273
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LPE+ANLWDV+ APTIV+TQRGAR +FQ L ++GVEVVEFD L V +Y +
Sbjct: 274 SRTLDLPEDANLWDVTLAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQE 333
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+L WECGGTLAA AI+SG++HKV AFVAPKIIGG APTPV ELG VEM+QA++L+
Sbjct: 334 RGFLQCFWECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVEMTQAVELV 393
Query: 404 DICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPS-----------IIY 452
D + QVGPD++I+G++ L + + + EP+ +
Sbjct: 394 DTEWSQVGPDLMITGYMPSSGGLWALEAALEGADDDTAAAAAAEPTRRRNIAAAAGRSVS 453
Query: 453 FYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTA 512
FYK WD +GA SNFSPHPI +P AHKF+G P A +E I A
Sbjct: 454 FYKAWDQWGALSNFSPHPIALP----------------AHKFSGGQHPDAAAVMEAIAAA 497
Query: 513 KSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV-- 570
SPEEAAR+GR +R P+ +R DW S K+ M AL+ KF + +MLL+T G+
Sbjct: 498 PSPEEAARIGRRTERMRPELLRKDWGSAKLSFMAAALRAKFRTHAGPRAMLLATAGAACL 557
Query: 571 -LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLG 606
LVEASPHD FWG G E G N LGRLLMQ+R +G
Sbjct: 558 ELVEASPHDYFWGAGYERTGQNKLGRLLMQVRGRMVG 594
>gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
nagariensis]
gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
nagariensis]
Length = 547
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/559 (51%), Positives = 357/559 (63%), Gaps = 40/559 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T PHPN C++ G E Y AQGT AEV AV A G RGATAYLN+E GDC
Sbjct: 1 GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60
Query: 121 HGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEAR 180
HG+ AV ALV+ G++RVVVG+R+PL+HLR +A+ LR+ G+D S A
Sbjct: 61 HGEMAAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFD----GDDATSAAAYGAM 116
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
+CL N L+HR+ R P V KYAMTLD GKIA + GH++W+SS S
Sbjct: 117 SACLAANEALLHRSVLRRPLGVLKYAMTLD------------GKIATNIGHSSWVSSPQS 164
Query: 241 RDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSD 300
R VF++R RSDAV+VGGNTVRRDNPRLT R GGHTP RIV+++TL+LPE+ANLWDV+
Sbjct: 165 RGLVFEMRARSDAVIVGGNTVRRDNPRLTTRREGGHTPARIVMSRTLDLPEDANLWDVTL 224
Query: 301 APTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360
APTIV+TQRGAR +FQ L S GVEVVEFD L V +Y +RG+L WECGGTLAA
Sbjct: 225 APTIVLTQRGARTRFQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAP 284
Query: 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
I+SG++HKV AFVAPKIIGG APTPV ELG VEM+QA++L D + QVGPD++++G++
Sbjct: 285 TIASGVVHKVMAFVAPKIIGGVRAPTPVGELGFVEMTQAVELSDTSWSQVGPDLMMTGYM 344
Query: 421 QPIPDLMPVIPSEDETFAIDPTVTPYEPS-----------IIYFYKTWDPYGAFSNFSPH 469
L + + + PS + FYK WD +GA SNFSPH
Sbjct: 345 PASGGLWALEAALEAADEETAADAAAVPSRRRGPGSPQSRSVAFYKAWDRWGALSNFSPH 404
Query: 470 PIQMP------DVNGDVT--WSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARL 521
PI MP G T W+SVEHYYQAHKF+G + A +E I A SPEEAAR+
Sbjct: 405 PIVMPVELPGGRDGGAATRRWASVEHYYQAHKFSGGHHQDAAAVMEAIAAAPSPEEAARI 464
Query: 522 GRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFW 581
GR +R P+ +R DW + K+ M+ AL+ KFS +P +MLL+T G ASPHD +W
Sbjct: 465 GRRAERTRPELLRRDWATAKVAFMHAALRAKFSTHPGPRAMLLATAG-----ASPHDYYW 519
Query: 582 GGGREGEGLNYLGRLLMQL 600
G G + G N LGRLLMQ+
Sbjct: 520 GAGYDRTGQNKLGRLLMQV 538
>gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
tauri]
gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
tauri]
Length = 655
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/614 (43%), Positives = 353/614 (57%), Gaps = 76/614 (12%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-- 101
++ +R +A S G ++PHP C I + G QG AE+ VEA
Sbjct: 59 DECEIVRAMCALAMSSEGASAPHPLSACAITDANGTTRVARGHEGQGATRAEIACVEALV 118
Query: 102 -GGSFCRGATAYLNMEP--GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G RG TA +N+EP G+ G+ AV ALV AG+ RVVVG+ +PL LRG+AV+A+R
Sbjct: 119 RDGVGVRGGTACVNLEPVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMR 178
Query: 159 SQGLQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+G+ V VL D ++ +E E C N L++R + +P+SV+KYAMTLD
Sbjct: 179 ERGIVVDVL--DARASGLEGEVAARCRETNEALLYRVATGLPYSVYKYAMTLD------- 229
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +GH++W++ +R+RVF R R+D +VVGG TVR+DNPRLT R G
Sbjct: 230 -----GKIATDNGHSSWVTGAEARERVFRERKRADCIVVGGATVRKDNPRLTCREETGFQ 284
Query: 278 PMRIVLTQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
P RIVL++TLNLPE+A LW V D APTIV T +GAR +FQK L S+GVEVVEF+ L +
Sbjct: 285 PARIVLSRTLNLPEDAELWRVRDVAPTIVCTTKGARPEFQKMLRSKGVEVVEFNELTPLE 344
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+Y H RG+L WECGG LAA A+ SG+ H V AFVAPK+IGG +APTP+ +LG M
Sbjct: 345 AAKYMHARGFLRCFWECGGGLAAPAMKSGVFHHVMAFVAPKLIGGNSAPTPLGDLGFEAM 404
Query: 397 SQALDLIDICYEQVGPDMLISGF------------------------------------- 419
AL L + E VG D+L+ G+
Sbjct: 405 HDALPLAGVTLETVGRDILVRGYVPNSQSTGALGRIASAGHSVRGLDFNVGESADDEERA 464
Query: 420 ----LQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPD 475
L + ++ + EDE A D E I FYK WD +GA SNFSP P+++ D
Sbjct: 465 DEGTLMLLEQVVASLAQEDEVCAQD------ELPPIKFYKAWDEHGALSNFSPFPVRIDD 518
Query: 476 VNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRS 535
+ W +VEHYYQA KF GV+ A+D EKIK A SPE AA++GRS Q +P+ +R
Sbjct: 519 IE----WPTVEHYYQAQKFAGVDMEVARDTYEKIKIAPSPEAAAKIGRSAQVTNPESIRK 574
Query: 536 DWESVKIDIMYRALKCKFSIYPHLNSMLLST----GGSVLVEASPHDLFWGGGREGEGLN 591
DWE VK+++M+RAL KF + ++LL + G L+E SP D+ WG GR+G G N
Sbjct: 575 DWEDVKLEVMHRALVRKFIRHEGPRNLLLQSVCNDGRVRLIEDSPVDMIWGTGRDGSGQN 634
Query: 592 YLGRLLMQLRSEFL 605
LG LL LR EF+
Sbjct: 635 LLGTLLADLREEFV 648
>gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 628
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/580 (45%), Positives = 360/580 (62%), Gaps = 32/580 (5%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ RA ++A +S G T PHP GC++ + G V E + QG AEV A +A
Sbjct: 59 DLEHVARAVELAGESDGLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAADAANG 118
Query: 105 FCRGATAYLNMEP--GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G AYLN+EP G+ G+ V+AL +AG+TRVV+GI +P+ R AV ALR++G+
Sbjct: 119 GAAGGCAYLNLEPVHGNDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALRARGV 178
Query: 163 QVHVLGEDLQSKIIEEARKSCLLV-NAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
V VLG+D + EEA++ N L++R + PFSV KYAMT+D
Sbjct: 179 HVVVLGDDDLDEREEEAKQRGEAARNRALLYRVATGRPFSVLKYAMTVD----------- 227
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA +SGH++W++ T+R V+ R RSDAVVVGG+TVRRDNP LT R GH P R+
Sbjct: 228 -GKIATTSGHSSWVTGPTARGAVWAERARSDAVVVGGSTVRRDNPNLTTRRKDGHLPARV 286
Query: 282 VLTQTLNLP-EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
VL++T++LP NLWD S+APTIV+T+ GAR +FQ L GVEV+EFD L V EY
Sbjct: 287 VLSRTMDLPGPRTNLWDTSEAPTIVMTRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEY 346
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG--GKNAPTPVSELGMVEMSQ 398
RGYL + WECGG LAA A++ G+IH V AF+APKIIG G AP+PV E G+ M+
Sbjct: 347 CGKRGYLQLFWECGGGLAAPALNDGVIHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMTD 406
Query: 399 ALDLIDICYEQVGPDMLISGFLQPIPDLMPVIP-SEDETFAIDPTVTPYEPSI---IYFY 454
A+ L + G D+L+SG+L + P +ED ++ + S + FY
Sbjct: 407 AMTLRGLALSTHGRDVLLSGYLPAVNTSEEADPWTEDPIAVVERAASAMRASDAKEVRFY 466
Query: 455 KTWDPYGAFSNFSPHPIQMPD-------VNGD---VTWSSVEHYYQAHKFTGVNDPAAQD 504
K+WD YGA SNFSPH I P V+GD V W +VEH+YQA KF+GV+ PAA+D
Sbjct: 467 KSWDRYGALSNFSPHSIVAPKSWRGVDAVDGDDEDVEWPTVEHFYQAQKFSGVDAPAARD 526
Query: 505 FVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLL 564
+E+I+ A SPEEAAR+GR+ Q+ P+ +R+DW + K +M AL+ K S + ++L+
Sbjct: 527 AMERIRAAASPEEAARIGRTSQKHCPELIRADWAAQKEGVMRAALRAKLSRHDAPRALLV 586
Query: 565 STGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
T G ++E SPHD WG GR+G G N LG++LM+LR E
Sbjct: 587 GTKGKDVLEDSPHDAIWGVGRDGGGGNLLGKMLMELRDEL 626
>gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299]
gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299]
Length = 639
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/589 (43%), Positives = 341/589 (57%), Gaps = 43/589 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D A++ AA+++ S G PHP GC++ S G V + QG +EV AV G
Sbjct: 30 DDLAHVLCAAELSHGSDGLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAVREAG 89
Query: 104 SFCRGATAYLNMEP--GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ G AYLN+EP G G+ AV ALV++ ++RVVVGI +P+ +RGQAV ALR G
Sbjct: 90 ARADGGVAYLNLEPAHGPAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAALRDAG 149
Query: 162 LQVHVLGE----------DLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDV 211
++V VLGE + + + E C N L+HR + PFS+FKYAMT+D
Sbjct: 150 VRVDVLGEFTSRFTSAADERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAMTVD- 208
Query: 212 ILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR 271
GKIA +SGH+AW++ +R +V+ R RSDAVVVGG TVRRDNP LT R
Sbjct: 209 -----------GKIATTSGHSAWVTGPAARQQVWAERARSDAVVVGGTTVRRDNPNLTTR 257
Query: 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI 331
GGH P RIV + NLW+ +A TIV+T GARR+FQ L + GVEVVEFD
Sbjct: 258 RDGGHRPARIVRVRK----PRTNLWNTDEANTIVMTVAGARREFQAELRALGVEVVEFDE 313
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG--GKNAPTPVS 389
L V +Y RGYL + WECGG LA A++ G+ H V AFVAPKI+G G AP+PV
Sbjct: 314 LTPGAVADYCAKRGYLQLFWECGGGLAGPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVG 373
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPS 449
E G+ M+ AL L + + G D+LI G+L P + S + D T +
Sbjct: 374 ETGLERMTDALALRGLGIRKHGRDVLIIGYLPPASSTGALAESPEGGGTNDGTDAAGTDA 433
Query: 450 IIYFYKTWDPYGAFSNFSPHPIQMP-----------DVNGDVTWSSVEHYYQAHKFTGVN 498
+ FYK+WD GA SNFSPHPI P D W +VEH+YQA KF GV+
Sbjct: 434 SMRFYKSWDVNGALSNFSPHPIDAPLVWVGQTEDDTDAKNMCEWPTVEHFYQAQKFGGVD 493
Query: 499 DPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPH 558
DP A++ +E I+ A SPEEAAR+GR++QR +P +R DW+ K +M AL+ K + +
Sbjct: 494 DPDAREAMEAIRAASSPEEAARIGRTLQRTNPRLIRPDWDECKERVMRDALRAKLTRHAA 553
Query: 559 LNSMLLST--GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFL 605
++LL + G ++E SP D WG GR+G G N LGRLLM+LR L
Sbjct: 554 PRNLLLGSRAAGQCVLEDSPTDAVWGVGRDGTGGNLLGRLLMELRDAEL 602
>gi|302783817|ref|XP_002973681.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
gi|300158719|gb|EFJ25341.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
Length = 311
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/330 (54%), Positives = 237/330 (71%), Gaps = 23/330 (6%)
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+++TLNLP E +LWDVS+A TIV+TQRGARR+FQ+ L +RGVEVVEFD L + VM+Y +
Sbjct: 1 MSRTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCY 60
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG+L +LWECGG L+A A+++G+IHKV AFVAPKIIG APTPV ELGMV+M+QAL+L
Sbjct: 61 ERGFLMVLWECGGALSAPALAAGIIHKVIAFVAPKIIG-VTAPTPVGELGMVDMTQALNL 119
Query: 403 IDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTP----YEPSIIYFYKTWD 458
+D+ +EQ L+P + S +A DP++ ++IYFYK+WD
Sbjct: 120 LDVTFEQ----------------LIPRMKSPASAYADDPSIADAGIFSSSTVIYFYKSWD 163
Query: 459 PYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEA 518
PYGAF+NF+ H I++P TW SVEHYYQA KF+GV D A +E I+ A+SPEEA
Sbjct: 164 PYGAFTNFTAHSIKLP--GSSETWKSVEHYYQAQKFSGVKDELAMQAIENIRNAESPEEA 221
Query: 519 ARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHD 578
AR+GR + R+ PD VR DWE+ K+D+M AL KFS YP L S+LLST G VL+E+SP D
Sbjct: 222 ARIGRRLARERPDLVRPDWENSKMDVMEEALVAKFSSYPQLRSLLLSTAGCVLIESSPQD 281
Query: 579 LFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
FWG G++G G N LGRLLM+LR+ L E+
Sbjct: 282 YFWGSGKDGTGQNQLGRLLMKLRAAILTEN 311
>gi|449531432|ref|XP_004172690.1| PREDICTED: swarming motility protein YbiA-like, partial [Cucumis
sativus]
Length = 240
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/237 (73%), Positives = 199/237 (83%), Gaps = 1/237 (0%)
Query: 370 VFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPV 429
VFAFVAPKIIGG+NAP+PV ELGMVEM+QAL+LID+ YE+V DM+ISGFLQPI D+ P+
Sbjct: 1 VFAFVAPKIIGGRNAPSPVGELGMVEMTQALELIDVQYEKVEEDMMISGFLQPISDVAPI 60
Query: 430 IPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHY 488
IPS DET A+DPTV YEPSII FY TWD YGA SNFSPH I + D GD TW +VEHY
Sbjct: 61 IPSRDETLAVDPTVVSYEPSIISFYNTWDNYGALSNFSPHSIHIVDEIGDYSTWMTVEHY 120
Query: 489 YQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRA 548
YQAHKF GV+DP+AQ+ VEKIK+A SPEEA R+ R +Q+QHPD VRSDWE+ K D+MY+A
Sbjct: 121 YQAHKFVGVDDPSAQECVEKIKSASSPEEATRIARLLQKQHPDLVRSDWETAKFDVMYKA 180
Query: 549 LKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFL 605
LKCKFS YP L SMLLST GS+LVE+SPHDL WGGGR GEGLNYLGRLLM+LR EFL
Sbjct: 181 LKCKFSSYPVLKSMLLSTAGSILVESSPHDLVWGGGRFGEGLNYLGRLLMKLRVEFL 237
>gi|449485403|ref|XP_004157157.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis
sativus]
Length = 275
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/280 (65%), Positives = 222/280 (79%), Gaps = 31/280 (11%)
Query: 33 SAPVFCKFSRAEDAA------------------YIRRAADIADKSAGFTSPHPNFGCLIA 74
S+P+ C FSR AA +IRRAA+IADKSAGFT+PHPN+GC++A
Sbjct: 8 SSPIIC-FSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVA 66
Query: 75 TSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG 134
T +G VAG+G+L+ QGTK AEVQAVE G +CRG TA+LN+EP +C GD AVSALVQAG
Sbjct: 67 TPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQAG 126
Query: 135 ITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRA 194
I RVVVG+++PLQHLRG AVRALRSQG+QV VLGEDLQS+ IEEA+K+CLLVNAPLI +A
Sbjct: 127 IKRVVVGMKHPLQHLRGNAVRALRSQGVQVDVLGEDLQSRDIEEAQKACLLVNAPLICKA 186
Query: 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAV 254
S+VPFSV KYAMTLD GKIAA++GH+AWISS TSR RV +LRGRSDA+
Sbjct: 187 ASQVPFSVLKYAMTLD------------GKIAATTGHSAWISSVTSRHRVSELRGRSDAI 234
Query: 255 VVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEAN 294
VVGGNT+R+D+P+LTARHGGGHTP+R+V+++TL+LPEEA
Sbjct: 235 VVGGNTIRKDDPKLTARHGGGHTPVRVVMSRTLDLPEEAK 274
>gi|412986586|emb|CCO15012.1| riboflavin biosynthesis protein RibD [Bathycoccus prasinos]
Length = 680
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 236/643 (36%), Positives = 332/643 (51%), Gaps = 108/643 (16%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATS-TGKVAGEGYLYAQGTKPAEVQA--- 98
++D ++ RA +AD SAG +PHP F C+I S T + E + + Q + E QA
Sbjct: 65 SDDDEWVERACVLADSSAGECAPHPKFACVIVHSKTRDILCEAFQFGQAGEKCERQAERK 124
Query: 99 ----------------VEAGGSFCRGATAYLNMEPG---DCHGDHTAVSALVQA---GIT 136
G + YLNMEP + G+ +V AL + G+
Sbjct: 125 LREVLSSSSSLAKKETTTETGEY----DVYLNMEPVHGIEVSGETRSVDALTRMRSRGVR 180
Query: 137 RVVVGIRNPLQHLRGQAVRALRSQG----LQVHVLGEDLQSKIIEEARKSCLLVNAPLIH 192
R+V+G +P + RG A++ L +G Q+ V + + + ARK VN L++
Sbjct: 181 RIVIGTMHPNEKFRGNAIKELVERGGFKKEQIVVCKTNTRGAMC--ARK----VNEALLY 234
Query: 193 R-ATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRS 251
R AT P V+KYAMTLD GKIA+SSG + W++ SR+ VF R RS
Sbjct: 235 RCATGGYPHGVYKYAMTLD------------GKIASSSGKSKWVTGPESRETVFHERARS 282
Query: 252 DAVVVGGNTVRRDNPRLTARHGGG-----HTPMRIVLTQTLNLPEEANLWDVSDAPTIVV 306
DAV+VGG T+R D+PRLT+R+G G + P R+VL+++ ++PE+A LWD S A TIV+
Sbjct: 283 DAVIVGGGTLRTDDPRLTSRNGDGTLTHAYQPARVVLSRSFDVPEDARLWDTSVASTIVM 342
Query: 307 TQRG-ARRKFQKYLASRGVEVVEFDILNSRD-VMEYFHDRGYLSILWECGGTLAASAISS 364
T + K L +GV+VVEF+ + D V++ RG+L WECGGTLAA AI++
Sbjct: 343 TSASHGKPALAKILRDKGVDVVEFEGEFTMDKVLDEMRQRGWLQTFWECGGTLAAPAITA 402
Query: 365 GLIHKVFAFVAPKII-GGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
G +V AFVAPKI+ GG APTP+ + G M+ A+ L + G D+LI+G+L
Sbjct: 403 GAFSRVLAFVAPKIVGGGSKAPTPMGDFGCDAMADAVPLKATDAKVYGRDVLITGYLPNA 462
Query: 424 -------------------PDLMPVIPSED-----ETFAIDPTVTPYEPSI--------- 450
+ V S D +TF + + E
Sbjct: 463 FAKGRLKRFVEGGWMDGKRDGFVDVGESSDDSERVDTFGENEVLADVEQCCADEAESNDN 522
Query: 451 ---------IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPA 501
I FYK+WD Y A SNFS H + D++G+ W + E YYQA KF + P
Sbjct: 523 EKDDNASDEIRFYKSWDTYSALSNFSAHAV---DIDGE-NWLTSESYYQAQKFDDSH-PD 577
Query: 502 AQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNS 561
+ I A SPE+A+R+GR QR+ PD ++ DW S+KI +M R L+ KF+ + S
Sbjct: 578 GVEIKNAILKANSPEKASRIGRLKQRERPDLLKKDWNSIKIHVMDRVLRAKFTQHRSAQS 637
Query: 562 MLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
+LLSTG LVE SP D WG GR +G N LG LM+LR E
Sbjct: 638 LLLSTGQKRLVEDSPVDNVWGSGRNNDGKNLLGVALMKLRDEL 680
>gi|354567709|ref|ZP_08986877.1| riboflavin biosynthesis protein RibD [Fischerella sp. JSC-11]
gi|353542167|gb|EHC11631.1| riboflavin biosynthesis protein RibD [Fischerella sp. JSC-11]
Length = 372
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 237/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A +RR ++A ++ G TSP+P G +I G++ GEG+ G AEV A++A G+
Sbjct: 17 DRAMMRRCLELARRALGCTSPNPMVGAVI-VKDGEIIGEGFHPRAGEPHAEVFALKAAGA 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + +G S AL+ AG+ +VVVG+ +P + G + LR+ G++
Sbjct: 76 NARGATVYVSLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVAGGGIAKLRAAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ ++C +N IHR + P + KYAMTLD G
Sbjct: 136 V----------IVGVEEEACRKLNEGFIHRILYKRPLGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AW++++ +R V +R DAV+VGGNTVR DNP LT+R G H P+RIV+
Sbjct: 174 KIATTTGHSAWVTNQEARSVVHQVRAACDAVIVGGNTVRLDNPHLTSRQQGAHNPLRIVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++LNLP +A+LW+ +APT+V+T GA +K L +GVEV+E L VM Y +D
Sbjct: 234 SRSLNLPAQAHLWNTQEAPTLVLTDVGANPVSRKMLLKQGVEVIELSPLTPEKVMAYLYD 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGGTLAA+AI+ G + K+ AF+APKIIGG NAPTPV +LG+ M++AL L
Sbjct: 294 RGFCSVLWECGGTLAANAIAQGAVQKILAFIAPKIIGGSNAPTPVGDLGLTTMTEALSLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ VG D LI G+L
Sbjct: 354 RVEVRVVGADCLIEGYL 370
>gi|427728616|ref|YP_007074853.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Nostoc sp.
PCC 7524]
gi|427364535|gb|AFY47256.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Nostoc sp.
PCC 7524]
Length = 401
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/421 (40%), Positives = 249/421 (59%), Gaps = 36/421 (8%)
Query: 1 SHRREKNQSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSA 60
+++ NQ D F +A S + + +P + D A ++R ++A ++
Sbjct: 12 AYQPHNNQQDEF------------LARSPLGSDSPTPQQVGSDFDRAMMQRCLELARRAL 59
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G ++ GK+ GEG+ G AEV A+ A G RGAT Y+N+EP +
Sbjct: 60 GRTSPNPLVGAVV-VKDGKIVGEGFHPRAGEPHAEVFALRAAGDLARGATVYVNLEPCNH 118
Query: 121 HGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
+G S L+ AG+ +VVVG+ +P + G + LR+ G++V V E
Sbjct: 119 YGRTPPCSEGLIAAGVAKVVVGMVDPNPLVAGGGIARLRAAGVEVLVGVET--------- 169
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+C +N +HR + P + KYAMTLD GKIA +SGH+AW++++
Sbjct: 170 -PACQQLNEAFVHRILHKRPLGILKYAMTLD------------GKIATTSGHSAWVTNQA 216
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V LR DAVVVGGNTVR+DNP LT+ G H P+R+V+++ LNLP +A LW S
Sbjct: 217 ARSEVHQLRAACDAVVVGGNTVRQDNPYLTSHQEGAHNPLRVVMSRRLNLPTDARLWQTS 276
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359
DAPT+V+T+ GA QK+L +GVEVVE L + M+ ++RG+ S+LWECGGTLAA
Sbjct: 277 DAPTLVLTEVGANLDLQKFLLHQGVEVVELPALTPQAAMDCLYERGFCSVLWECGGTLAA 336
Query: 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
SAI+ G I K+ AF+APKIIGG +APTPV +LG+ M++AL L + + VG D L+ G+
Sbjct: 337 SAIAQGAIQKILAFIAPKIIGGNHAPTPVGDLGLTTMTEALLLERVRWRVVGSDCLVEGY 396
Query: 420 L 420
L
Sbjct: 397 L 397
>gi|434406743|ref|YP_007149628.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cylindrospermum stagnale PCC 7417]
gi|428260998|gb|AFZ26948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cylindrospermum stagnale PCC 7417]
Length = 402
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 243/406 (59%), Gaps = 24/406 (5%)
Query: 17 KDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATS 76
D + + + V++ +P + D ++R ++A ++ G TSP+P G +I
Sbjct: 16 NDTQENALLVGTAVSSDSPKKVRVGSDNDRQMMQRCLELARRALGRTSPNPLVGAVI-VK 74
Query: 77 TGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGI 135
G++ GEG+ G AEV A+ A G+ GAT Y+++EP + +G S AL+ AG+
Sbjct: 75 DGEIVGEGFHPRAGEPHAEVFALRAAGNRAHGATIYVSLEPCNHYGRTPPCSEALIDAGV 134
Query: 136 TRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRAT 195
+VVVG+ +P + G + LR G++V V +EEA +C +N +HR
Sbjct: 135 AKVVVGMVDPNPLVAGGGIDRLRRAGIEVLVG--------VEEA--ACHQLNEAFVHRIL 184
Query: 196 SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVV 255
+ P + KYAMTLD GKIA S GH+AW++S+ +R V LR DAV+
Sbjct: 185 YKRPMGILKYAMTLD------------GKIATSFGHSAWVTSQEARSEVHQLRLSCDAVI 232
Query: 256 VGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF 315
VGGNTVR+DNP LT+ GGH P+R+V+++ LNLPE A LW ++APT+V+T+ GA F
Sbjct: 233 VGGNTVRQDNPHLTSHQPGGHNPLRVVMSRRLNLPENARLWQTAEAPTLVLTEVGANPNF 292
Query: 316 QKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVA 375
Q L GVEVVE +L M Y + RG+ S+LWECGGTLAASAI+ G + KV AF+A
Sbjct: 293 QDLLRKLGVEVVELPLLTPDQAMTYLYKRGFCSVLWECGGTLAASAIAQGAVQKVLAFIA 352
Query: 376 PKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
PKIIGG NAPTPV +LG M++AL L + + +G D L+ G+L+
Sbjct: 353 PKIIGGSNAPTPVGDLGFTTMTEALSLERVRWRVIGVDCLVEGYLR 398
>gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
Length = 396
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 165/385 (42%), Positives = 239/385 (62%), Gaps = 27/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R ++A ++ G TSP+P G ++ G++ GEG+ G AEV A+ A G
Sbjct: 38 DVRMMQRCLELARRALGRTSPNPLVGAVV-VKDGEIVGEGFHPRAGEPHAEVFALRAAGE 96
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL+ AG+ +VVVG+ +P + G + LR G++
Sbjct: 97 LARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAGVE 156
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G ++ +C +N +HR + P + KYAMTLD G
Sbjct: 157 V-LVGVEM---------AACQQLNEGFVHRIVHKKPLGILKYAMTLD------------G 194
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SGH+AW+++ ++R V LR DAV+VGGNTVRRDNP LT+ G H P+R+V+
Sbjct: 195 KIATTSGHSAWVTNPSARGEVHQLRAACDAVIVGGNTVRRDNPYLTSHQEGVHNPLRVVM 254
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ ++LP +A+LW+ +APT+V+TQ GA FQK L +GVE+VE L VM Y +D
Sbjct: 255 SRQMDLPLDAHLWETVEAPTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYD 314
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGGTLAASAI+ G + K+ AF+APKIIGG +APTPV +LG M++AL L
Sbjct: 315 RGFCSVLWECGGTLAASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILE 374
Query: 404 DICYEQVGPDMLISGFLQPIPDLMP 428
+ + VG D L+ G+L P L P
Sbjct: 375 RVRWRVVGSDCLVEGYL---PSLNP 396
>gi|428309910|ref|YP_007120887.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Microcoleus
sp. PCC 7113]
gi|428251522|gb|AFZ17481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Microcoleus
sp. PCC 7113]
Length = 385
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 238/377 (63%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R ++A ++ G T+P+P G +I G++ GEG+ G AE+ A+ A G
Sbjct: 28 DRAMMQRCIELARRALGRTTPNPLVGSVI-VQNGEIVGEGFHPFAGQPHAEIFALRAAGE 86
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S ALV AG+T+VVVG+ +P + G V LR+ G++
Sbjct: 87 KARGATIYVNLEPCNHYGRTPPCSEALVAAGVTKVVVGMVDPNPLVAGGGVARLRAAGIE 146
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +EEA +C +N I+R + P + KYAMTLD G
Sbjct: 147 V-VVG-------VEEA--ACRQLNEAFIYRILHKRPLGILKYAMTLD------------G 184
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SGH+ W++ + +R +V LR DAV+VGGNTVR DNP LT+ H H P+R+V+
Sbjct: 185 KIATISGHSTWVTGQEARAQVHQLRAACDAVIVGGNTVRLDNPFLTSHHSDTHNPLRVVM 244
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TLNLP +A+LW +DAPT+V+T+ GA FQ L + VEVVE L VMEY ++
Sbjct: 245 SRTLNLPLDAHLWQTNDAPTLVLTEVGALPDFQDQLVKKKVEVVELTPLTPAKVMEYLYN 304
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R S+LWECGGTLAA AI+ G + KV AF+APKI+GGK AP+PV +LG+ M++AL L
Sbjct: 305 RQLSSVLWECGGTLAARAIADGAVQKVLAFIAPKIVGGKVAPSPVGDLGLATMTEALTLE 364
Query: 404 DICYEQVGPDMLISGFL 420
+ + Q+GPD ++ G+L
Sbjct: 365 RVTWRQLGPDYVVEGYL 381
>gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Trichodesmium erythraeum IMS101]
gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Trichodesmium erythraeum IMS101]
Length = 374
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 236/378 (62%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + ++A ++ G T+P+P GC+I G++ GEG+ G AEV A+ G
Sbjct: 14 DPLIMAHCLELARRALGNTAPNPLVGCVI-IKNGQIIGEGFHPGAGYPHAEVFALTEAGE 72
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+N+EP + +G + AL+ AG+ RVV+G+ +P + G V L+ G++
Sbjct: 73 KARGATAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQDAGIE 132
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ C +N IHR PF + KYAMTLD G
Sbjct: 133 V----------VVGVLEAECRELNEAFIHRMLYHCPFGILKYAMTLD------------G 170
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AW++S+ +R V LR SDAV++GGNTVRRDNP LT+R + P+R+V+
Sbjct: 171 KIATTTGHSAWVTSQEARSEVHKLRAISDAVIIGGNTVRRDNPFLTSRSTQANNPLRVVM 230
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP EANLWDVS+A T+V T+ + ++F++YL +GVEV+E L VM +D
Sbjct: 231 SRSLDLPTEANLWDVSEAQTLVFTEIDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYD 290
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+LS+LWECGGTLAA A++ G + K++AF+APKIIGG+ APTPV LG+ +M++A +L
Sbjct: 291 RGFLSVLWECGGTLAARAMADGAVQKIWAFIAPKIIGGEIAPTPVGNLGLTKMTEAFELE 350
Query: 404 DICYEQVGPDMLISGFLQ 421
+I VG D L+ G+L
Sbjct: 351 NISMRTVGCDYLLEGYLH 368
>gi|440680286|ref|YP_007155081.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anabaena
cylindrica PCC 7122]
gi|428677405|gb|AFZ56171.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anabaena
cylindrica PCC 7122]
Length = 375
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 238/377 (63%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ ++R +A ++ G TSP+P G +I G++ GEG+ G AEV A+ A G
Sbjct: 17 DSLMMQRCLQLARRALGRTSPNPLVGAVIVKD-GEIVGEGFHPCAGEPHAEVFALRAAGE 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+++EP + +G S AL+ AG+++VVVG+ +P + G + LR+ G++
Sbjct: 76 KSHGATIYVSLEPCNHYGRTPPCSEALIAAGVSKVVVGMVDPNPLVAGGGIARLRAAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +C +N I+R + P + KYAMTLD G
Sbjct: 136 VLVG--------VEEA--ACRQLNEGFIYRILHKRPLGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SSGH+AWI+++ +R V LR DAV+VGGNTVR DNP LT+ G + P+R+V+
Sbjct: 174 KIATSSGHSAWITNQEARSEVHQLRAACDAVIVGGNTVRYDNPYLTSHQQGSNNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++LNLPE A +W+V++APT+V+T+ G+ F K L +GVEV+EF L VM Y ++
Sbjct: 234 SRSLNLPENARIWEVAEAPTVVLTEVGSSPDFHKLLLEKGVEVLEFPSLTPEKVMTYLYE 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGGTLAASAI+ G + K+ AF+APKIIGG +APTPV +LG M++AL L
Sbjct: 294 RGFCSVLWECGGTLAASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFTTMTEALSLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ + VG D L+ G+L
Sbjct: 354 RVHWRVVGSDCLVEGYL 370
>gi|414077926|ref|YP_006997244.1| riboflavin biosynthesis protein RibD [Anabaena sp. 90]
gi|413971342|gb|AFW95431.1| riboflavin biosynthesis protein RibD [Anabaena sp. 90]
Length = 393
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 240/379 (63%), Gaps = 24/379 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ + R ++A + G TSP+P G +I G++ GEG+ G AEV A+ A G
Sbjct: 35 DSRMMGRCVELARTALGRTSPNPLVGAVI-VQNGEIVGEGFHPCAGEPHAEVFALRAAGE 93
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RG+T Y+++EP + +G S L+ AG+++VVVG+ +P + G + L++ G++
Sbjct: 94 RARGSTIYVSLEPCNHYGRTPPCSQGLINAGVSKVVVGMVDPNPLVAGSGIARLQAAGIE 153
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G +EEA +C +N IHR + P + KYAMTLD G
Sbjct: 154 V-IVG-------VEEA--ACRRLNEGFIHRILYQRPLGILKYAMTLD------------G 191
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + GH+AW++++ +R V+ LR DAV+VGGNTVR+DNP LT+ H P+R+V+
Sbjct: 192 KIATTVGHSAWVTNQDARTEVYQLRAACDAVIVGGNTVRKDNPYLTSHQVEAHNPLRVVM 251
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++LNLPE+A LWD ++PT+VVT+ G+ + FQK L +GVEVVEF L VM + ++
Sbjct: 252 SRSLNLPEQARLWDTQESPTLVVTEVGSSQAFQKMLRDKGVEVVEFSSLTPEAVMSHLYE 311
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGG LAA AI+ G + K+ AF+APKIIGG +APTPV +LG+ M++AL L
Sbjct: 312 RGFCSVLWECGGILAARAIAQGSVQKIMAFIAPKIIGGDHAPTPVGDLGLTNMTEALLLE 371
Query: 404 DICYEQVGPDMLISGFLQP 422
+ + VG D L+ G+L P
Sbjct: 372 RVSWRVVGNDCLVEGYLPP 390
>gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
Length = 407
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/400 (41%), Positives = 242/400 (60%), Gaps = 32/400 (8%)
Query: 30 VANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ 89
+ SA + K D+ + R ++A ++ G TSP+P G +I G++ GEG+
Sbjct: 24 LVESAVIKEKIGTDFDSRMMLRCLELARRALGRTSPNPLVGAVI-VKDGEIVGEGFHPRA 82
Query: 90 GTKPAEVQAVEAGG--------SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVV 140
G AEV A++A G + RGAT Y+N+EP + +G S L+QAG+ +VVV
Sbjct: 83 GEPHAEVFALQAAGVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVV 142
Query: 141 GIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPF 200
G+ +P + G + LR+ G++V V E+ +C +N +HR + P
Sbjct: 143 GMVDPNPLVAGGGIARLRAAGIEVLVGVEE----------SACHQLNEAFVHRILYKRPL 192
Query: 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNT 260
+ KYAMTLD GKIA +SGH+AW++S+ +R V LR DA++VGGNT
Sbjct: 193 GILKYAMTLD------------GKIATTSGHSAWVTSQEARSEVHQLRAACDAIIVGGNT 240
Query: 261 VRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA 320
VR+DNP LT+ H H P+R+V+++ LNLPE A+LW +DAPT+V+TQ+GA FQ+ L
Sbjct: 241 VRQDNPYLTSHHLEAHNPLRVVMSRHLNLPESAHLWKTADAPTLVLTQKGANPDFQELLL 300
Query: 321 SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
++GVE+VE L + M Y ++RG+ S+LWECGGTLAASAI+ G + KV AF+APKIIG
Sbjct: 301 NQGVEIVELTSLTPDNAMAYLYERGFCSVLWECGGTLAASAIAQGAVQKVLAFIAPKIIG 360
Query: 381 GKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G APTPV +LG M++AL L + + VG D L+ G+
Sbjct: 361 GSIAPTPVGDLGFTTMTEALSLERVRWRVVGSDCLVEGYF 400
>gi|427706977|ref|YP_007049354.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nostoc sp. PCC
7107]
gi|427359482|gb|AFY42204.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Nostoc sp.
PCC 7107]
Length = 400
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 240/394 (60%), Gaps = 25/394 (6%)
Query: 29 LVANSAPVFCKFSRAE-DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
LV NS S A+ D+ ++R ++A ++ G TSP+P G ++ G++ GEG+
Sbjct: 28 LVFNSQTQNSMSSEADFDSRMMQRCLELARRALGRTSPNPLVGAVV-VKDGEIVGEGFHP 86
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPL 146
G AEV A+ A G RGAT Y+N+EP + +G S L++AG+ +VVVG+ +P
Sbjct: 87 RAGEPHAEVFALRAAGVGARGATVYVNLEPCNHYGRTPPCSEGLIEAGVAKVVVGMVDPN 146
Query: 147 QHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYA 206
+ G + LR+ G++V V E+ ++C +N +HR + PF + KYA
Sbjct: 147 PLVAGGGIARLRAAGVEVLVGVEN----------EACQQLNEAFVHRILYKKPFGILKYA 196
Query: 207 MTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNP 266
MTLD GKIA ++GH+AW++++ +R V LR DA++VGGNTVR+DNP
Sbjct: 197 MTLD------------GKIATTAGHSAWVTNQAARSEVHQLRAACDAIIVGGNTVRQDNP 244
Query: 267 RLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV 326
LT+ G H P+R+V+++ NLPE A LWD +APT+V+T+ GA QK L GVEV
Sbjct: 245 FLTSHQVGAHNPLRVVMSRQFNLPENARLWDTQEAPTLVLTEVGADPDLQKMLLKHGVEV 304
Query: 327 VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
VE L M + ++RG+ S+LWECGG LAASAI+ G + KV AF+APKIIGG +APT
Sbjct: 305 VELPALTPEQAMIHLYERGFCSVLWECGGNLAASAIAQGAVQKVMAFIAPKIIGGSHAPT 364
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
PV +LG+ M++AL L + + VG D L+ G+L
Sbjct: 365 PVGDLGLTTMTEALPLERVLWRVVGSDCLVEGYL 398
>gi|434394049|ref|YP_007128996.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Gloeocapsa
sp. PCC 7428]
gi|428265890|gb|AFZ31836.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Gloeocapsa
sp. PCC 7428]
Length = 382
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 234/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R +A ++ G T+P+P G +I G++ GEG+ G AEV A+ A G
Sbjct: 17 DRAMMQRCLQLARRALGRTAPNPLVGSVIVQG-GEIVGEGFHPGAGQPHAEVFALRAAGD 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL+ A + +VVVG+ +P + G + LRS G++
Sbjct: 76 RARGATVYVNLEPCNHYGRTPPCSEALIAAKVAKVVVGMVDPNPLVAGGGIARLRSAGIK 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ C +N +HR + PF + KYAMTLD G
Sbjct: 136 V----------IVGVEEDDCRQLNEGFVHRILYQRPFGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SSGH+AWIS++++R+ V LR DAV+VGGNTVR DNPRLT+R H P+R+V+
Sbjct: 174 KIATSSGHSAWISNQSARNLVHQLRAACDAVIVGGNTVRNDNPRLTSRQAEAHNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP EA LW ++ PT+V+T+ A +FQ++L + VEVVE L M + +
Sbjct: 234 SRTLDLPTEAYLWQTAEFPTLVLTEINANPQFQQFLRQKNVEVVELPSLTPTQAMAHLYA 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGGTLAA AI+ G + K+ AF+APKIIGG +AP+P+S+LG+ M+QAL L
Sbjct: 294 RGFSSVLWECGGTLAARAIAEGSVQKILAFIAPKIIGGSSAPSPISDLGLTNMNQALALE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ ++ +G D L+ G+L
Sbjct: 354 RVRWQTIGSDCLVEGYL 370
>gi|376007777|ref|ZP_09784962.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Arthrospira sp. PCC 8005]
gi|375323753|emb|CCE20715.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Arthrospira sp. PCC 8005]
Length = 388
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R ++A + G T+P+P GC+I ++ GEG+ G AE+ A+ + G
Sbjct: 13 DRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDD-QIIGEGFHPGPGQPHAEIFALRSAGE 71
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL++AG+ +VV G+ +P + GQ + LR G++
Sbjct: 72 LARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQAGIE 131
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ +CL +N +HR + F + KYAMTLD G
Sbjct: 132 V----------IVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLD------------G 169
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +GH+AW++ +R V LR DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 170 KIATDTGHSAWVTGAIARQEVHRLRVACDAVIVGGNTVRRDNPHLTTHGQGEPNPLRVVM 229
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP A LWD S+A TIV T+ G+R FQ++L +GVEVVEF L VM YF++
Sbjct: 230 SRSLDLPSSARLWDTSEAATIVFTEVGSRPDFQEHLRKKGVEVVEFAPLTPAKVMSYFYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LA+ AI+ G +HK+ AF+APKIIGG+ AP+PV LG +M++AL L
Sbjct: 290 RQFLSVLWECGGRLASEAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLE 349
Query: 404 DICYEQVGPDMLISGFL 420
+ +G D LI G+L
Sbjct: 350 GVSLRAIGSDYLIEGYL 366
>gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Anabaena variabilis ATCC 29413]
gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Anabaena variabilis ATCC 29413]
Length = 396
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 238/385 (61%), Gaps = 27/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R ++A ++ G TSP+P G ++ G++ GEG+ G AEV A+ A G
Sbjct: 38 DVRMMQRCLELARRALGRTSPNPLVGAVV-VKDGEIVGEGFHPRAGEPHAEVFALRAAGE 96
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S L+ AG+ +VVVG+ +P + G + LR G++
Sbjct: 97 LARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAGVE 156
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G ++ +C +N +HR + P + KYAMTLD G
Sbjct: 157 V-LVGVEM---------AACQQLNEGFVHRILHKKPLGILKYAMTLD------------G 194
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SGH+AW+++ ++R V LR DAV+VGGNTVRRDNP LT+ G H P+R+V+
Sbjct: 195 KIATVSGHSAWVTNPSARGEVHQLRAACDAVIVGGNTVRRDNPYLTSHQEGVHNPLRVVM 254
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP +A+LW+ ++APT+V+TQ GA FQK L +GVE+VE L VM + +D
Sbjct: 255 SRQLDLPVDAHLWETAEAPTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYD 314
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGGTLAASAI+ G + K+ AF+APKIIGG +APTPV +LG M++AL L
Sbjct: 315 RGFCSVLWECGGTLAASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILE 374
Query: 404 DICYEQVGPDMLISGFLQPIPDLMP 428
+ + VG D L+ G+L P L P
Sbjct: 375 RVRWRVVGSDCLVEGYL---PSLNP 396
>gi|409990954|ref|ZP_11274263.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca]
gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis
NIES-39]
gi|409938182|gb|EKN79537.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca]
Length = 387
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 231/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R ++A + G T+P+P GC+I K+ GEGY G AE+ A+ + G
Sbjct: 13 DRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQ-KIIGEGYHPGPGQPHAEIFALRSAGE 71
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL++AG+ +VV G+ +P + GQ + L G++
Sbjct: 72 LARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCEAGIE 131
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G +EE+ +CL +N +HR + F +FKYAMTLD G
Sbjct: 132 V-IVG-------VEES--ACLKLNEAFVHRIIYKQTFGIFKYAMTLD------------G 169
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA G +AW++ +R V LR DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 170 KIATDIGDSAWVTGAIARQEVHRLRVACDAVIVGGNTVRRDNPHLTTHGQGEPNPLRVVM 229
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP A LWD S+A TIV T+ G+R FQ++L RGVEVVEF L VM YF++
Sbjct: 230 SRSLDLPSSARLWDTSEAATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LA+ AI+ G +HK+ AF+APKIIGG+ AP+PV LG +M+QAL L
Sbjct: 290 RQFLSVLWECGGRLASEAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTQALSLE 349
Query: 404 DICYEQVGPDMLISGFL 420
+ +G D LI G+L
Sbjct: 350 GVSLRAIGSDYLIEGYL 366
>gi|423062881|ref|ZP_17051671.1| riboflavin biosynthesis protein RibD [Arthrospira platensis C1]
gi|406715837|gb|EKD10990.1| riboflavin biosynthesis protein RibD [Arthrospira platensis C1]
Length = 388
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R ++A + G T+P+P GC+I ++ GEG+ G AE+ A+ + G
Sbjct: 13 DRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDD-QIIGEGFHPGPGQPHAEIFALRSAGE 71
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL++AG+ +VV G+ +P + GQ + LR G++
Sbjct: 72 LARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLREAGIE 131
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ +CL +N +HR + F + KYAMTLD G
Sbjct: 132 V----------IVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLD------------G 169
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +GH+AW++ +R V LR DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 170 KIATDTGHSAWVTGAIARQEVHRLRVACDAVIVGGNTVRRDNPHLTTHGQGEPNPLRVVM 229
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP A LWD S+A TIV T+ G+R FQ++L +GVEV+EF L VM YF++
Sbjct: 230 SRSLDLPSSARLWDTSEAATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LA+ AI+ G +HK+ AF+APKIIGG+ AP+PV LG +M++AL L
Sbjct: 290 RQFLSVLWECGGRLASEAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLE 349
Query: 404 DICYEQVGPDMLISGFL 420
+ +G D LI G+L
Sbjct: 350 AVSLRAIGSDYLIEGYL 366
>gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
Length = 388
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R ++A + G T+P+P GC+I ++ GEG+ G AE+ A+ + G
Sbjct: 13 DRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDD-QIIGEGFHPGPGQPHAEIFALRSAGE 71
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S AL++AG+ +VV G+ +P + GQ + LR G++
Sbjct: 72 LARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQAGIE 131
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ +CL +N +HR + F + KYAMTLD G
Sbjct: 132 V----------IVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLD------------G 169
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +GH+AW++ +R V LR DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 170 KIATDTGHSAWVTGAIARQEVHRLRVACDAVIVGGNTVRRDNPHLTTHGQGEPNPLRVVM 229
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP A LWD S+A TIV T+ G+R FQ++L +GVEV+EF L VM YF++
Sbjct: 230 SRSLDLPSSARLWDTSEAATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LA+ AI+ G +HK+ AF+APKIIGG+ AP+PV LG +M++AL L
Sbjct: 290 RQFLSVLWECGGRLASEAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLE 349
Query: 404 DICYEQVGPDMLISGFL 420
+ +G D LI G+L
Sbjct: 350 AVSLRAIGSDYLIEGYL 366
>gi|427722155|ref|YP_007069432.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Leptolyngbya sp.
PCC 7376]
gi|427353875|gb|AFY36598.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leptolyngbya
sp. PCC 7376]
Length = 372
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 242/390 (62%), Gaps = 26/390 (6%)
Query: 32 NSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGT 91
S PV + A D +RR ++A K+AG T+P+P G ++ G++ GEG+ G
Sbjct: 2 TSNPV--EVGTAFDRKMMRRCIELAQKAAGRTAPNPMVGAVVVKD-GEIIGEGFHPGAGK 58
Query: 92 KPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLR 150
AEV A+ G +GAT Y+++EP + +G S A+V+AG+ +VVVG+ +P +
Sbjct: 59 PHAEVFALREAGDAAKGATIYVSLEPCNHYGRTPPCSLAVVKAGLAKVVVGMVDPDPRVS 118
Query: 151 GQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLD 210
G ++ ++ G++ V E++ +C +N IHR + P + KYAMTLD
Sbjct: 119 GGGIKTIQDAGIETLVGVEEV----------ACQQLNEGFIHRILQKQPLGILKYAMTLD 168
Query: 211 VILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA 270
GKIA ++GH+AWI+ + +R+RV++LR DAV+VGGNTVR DNP LT
Sbjct: 169 ------------GKIATTTGHSAWITHQETRNRVYELRSVCDAVIVGGNTVRLDNPHLTT 216
Query: 271 RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
H P+R++++QTL+ P++ +LWDV+ APT+V+T+ + Q +L +GVE+ D
Sbjct: 217 HDTTDHNPLRVIVSQTLDFPKDRHLWDVAIAPTVVITKPEINPEMQSFLKEQGVEIAHLD 276
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+++ + VM+Y ++RG L +LWECGGTL+A AI+ G + KV AF+APKIIGGK+APTPV +
Sbjct: 277 LVSPKTVMQYLYERGCLQVLWECGGTLSAQAIAEGTVQKVMAFIAPKIIGGKSAPTPVGD 336
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG+ M +AL L + +Q+G D L+ G L
Sbjct: 337 LGLTLMDEALVLEQMQLQQLGEDFLLEGRL 366
>gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
Length = 369
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/381 (42%), Positives = 234/381 (61%), Gaps = 24/381 (6%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
+ A D ++R +A K+ G TSP+P G +I ++ GEG+ G AEV A+
Sbjct: 9 ASAFDREMMQRCITLARKALGATSPNPMVGAVIVREQ-EIVGEGFHPGAGQPHAEVFALS 67
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
+GAT Y+N+EP + +G AL++AGI +V+VG+ +P + G+ + L
Sbjct: 68 VAAEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTE 127
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V V G IEE ++C +N IHR + PF + KYAMTLD
Sbjct: 128 AGIEV-VAG-------IEE--EACRRLNEGFIHRVLYQRPFGILKYAMTLD--------- 168
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIAA+SGH+AW++ + SR V LR DAV++GGNTVR+DNP LT H P+
Sbjct: 169 ---GKIAATSGHSAWVTGEASRRIVHQLRAACDAVIIGGNTVRQDNPHLTTHGVSSHNPL 225
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
R+V++++LNLP EANLW+ PT+V T+ G QK L R VEV+E ++L VM+
Sbjct: 226 RVVMSRSLNLPLEANLWETDKVPTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQ 285
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ + RG+ S+LWECGGTLAASAI+ G++ KV AF+APKIIGG++AP+PV +LG+ +MS A
Sbjct: 286 HLYQRGFCSVLWECGGTLAASAITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDKMSNA 345
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L L + ++V D +I G+L
Sbjct: 346 LQLQRVALQRVDNDFVIEGYL 366
>gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
Length = 375
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 236/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ ++ +A ++ G TSP+P G ++ ++ GEG+ G AEV A+ A G
Sbjct: 17 DSLMMQWCLQLARRALGRTSPNPLVGAVVVQDR-EIVGEGFHPRAGEPHAEVFALRAAGE 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+++EP + +G S L+ AGI++VVVG+ +P + G + LR+ G++
Sbjct: 76 KAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLRAAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +C +N IHR + P + KYAMTLD G
Sbjct: 136 VLVG--------VEEA--ACRQLNEGFIHRIVHKQPLGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SSGH+AWI++ +R V LR DAV+VGGNTVR+DNP LT G+ P+R+V+
Sbjct: 174 KIATSSGHSAWITNPDARSEVHQLRAACDAVIVGGNTVRQDNPFLTCHQWDGNNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++LNLPE+A LW+V++APT+V+T+ G+ FQK L +GVEV+E +L VM + ++
Sbjct: 234 SRSLNLPEDARLWNVAEAPTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYE 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G+ S+LWECGGTLAASAI+ G + K+ AF+APKIIGG +APTPV +LG M++AL L
Sbjct: 294 LGFCSVLWECGGTLAASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFTTMTEALRLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+C+ VG D L+ G+L
Sbjct: 354 KVCWRVVGSDCLVEGYL 370
>gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
Length = 371
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 249/393 (63%), Gaps = 28/393 (7%)
Query: 29 LVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA 88
+ +N+APV F RA ++R +A ++AG T+P+P G ++ K+ GEG+
Sbjct: 1 MTSNAAPVGTDFDRA----MMQRCITLAKQAAGKTAPNPMVGAVVVQDQ-KIIGEGFHPG 55
Query: 89 QGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQ 147
G AEV A+ G+ +GAT Y+++EP + HG S A+V+AGI++VVVG+ +P
Sbjct: 56 AGQPHAEVFALREAGAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNP 115
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
+ G ++ L G++V V G +EEA +C +NA + R + P + KYAM
Sbjct: 116 LVAGGGLKTLTDAGIEV-VTG-------VEEA--ACRALNAGFVWRMVHQRPLGILKYAM 165
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
TLD GKIA ++GH+AWI+ + +R++V+DLR + DAVVVGGNTVR D+P
Sbjct: 166 TLD------------GKIATTTGHSAWITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPY 213
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
LT H P+RIV++QTL LP + +LWDV+ APT+V+TQ A + Q +L +GVEVV
Sbjct: 214 LTTHGTADHNPLRIVVSQTLTLPRDRHLWDVTAAPTVVLTQATANPEMQAFLRQQGVEVV 273
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
D ++ VM+Y +DRG L +LWECGGTLAA+AI+SG I KV AF+APKIIGG+ APTP
Sbjct: 274 HLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAAIASGSIQKVMAFIAPKIIGGQGAPTP 333
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
V LG+ M +A+ L ++ + +G D L++G L
Sbjct: 334 VGNLGLTLMDEAITLENVQLQSIGHDFLLTGDL 366
>gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
MBIC11017]
gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
MBIC11017]
Length = 387
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 233/378 (61%), Gaps = 29/378 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++R +A K+AGFT+P+P GC+I G++ GEGY G AEV A+ A G +G
Sbjct: 27 MQRCLQLAQKAAGFTTPNPLVGCVIERD-GEIVGEGYHPKAGEPHAEVFALRAAGDKAKG 85
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
ATAY+++EP + G S ALV+AG+ VVVG+ +P + G+ + LR+ G+QV +
Sbjct: 86 ATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRAAGIQV-IT 144
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G +EEA C VN +HR + PF + KYAMTLD GKIA
Sbjct: 145 G-------VEEA--DCQRVNEAFVHRILYQRPFGILKYAMTLD------------GKIAT 183
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-----HTPMRIV 282
++GH+AWI+ + +R V LR DAV+VGGNTVRRDNP LT H + P+R+V
Sbjct: 184 TAGHSAWITKEVARAHVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVV 243
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L++TL+LP A+LW+ APTIV+TQ + Q YL +GVEVV D L VM Y
Sbjct: 244 LSRTLDLPPTAHLWETDIAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLG 303
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+ LS+LWECGGTL+A AI+ G + KV AF+APKI+GG+NAP+PV +LG +M++AL L
Sbjct: 304 KKELLSVLWECGGTLSARAIADGSVQKVLAFIAPKIVGGQNAPSPVGDLGFNKMTEALQL 363
Query: 403 IDICYEQVGPDMLISGFL 420
+ + VG D L+ G+L
Sbjct: 364 ERVRWHIVGEDCLVEGYL 381
>gi|359459871|ref|ZP_09248434.1| riboflavin biosynthesis protein RibD [Acaryochloris sp. CCMEE 5410]
Length = 387
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 233/378 (61%), Gaps = 29/378 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++R +A ++AGFT+P+P GC+I GK+ GEGY G AEV A+ A G +G
Sbjct: 27 MQRCLQLAQQAAGFTTPNPLVGCVIERD-GKIVGEGYHPKAGEPHAEVFALRAAGDKAKG 85
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
ATAY+++EP + G S ALV+AG+ VVVG+ +P + G+ + LR+ G+QV +
Sbjct: 86 ATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRAAGIQV-IT 144
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G +EEA C VN +HR + PF + KYAMTLD GKIA
Sbjct: 145 G-------VEEA--DCQRVNEAFVHRVLYQRPFGILKYAMTLD------------GKIAT 183
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-----HTPMRIV 282
++GH+AWI+ + +R V LR DAV+VGGNTVRRDNP LT H + P+R+V
Sbjct: 184 TAGHSAWITKEVARAHVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVV 243
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L++TL+LP A+LW+ A TIV+TQ K Q YL +GVEVV D L VM Y
Sbjct: 244 LSRTLDLPPTAHLWETDIASTIVLTQGHPNGKGQAYLEKQGVEVVNLDELTPATVMAYLG 303
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
++ LS+LWECGGTL+A AI+ G + KV AF+APKI+GG+NAP+PV +LG +M++AL L
Sbjct: 304 EKELLSVLWECGGTLSARAIADGSVQKVLAFIAPKIVGGQNAPSPVGDLGFNQMTEALQL 363
Query: 403 IDICYEQVGPDMLISGFL 420
+ + VG D L+ G+L
Sbjct: 364 ERVRWHIVGEDCLVEGYL 381
>gi|411118160|ref|ZP_11390541.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Oscillatoriales cyanobacterium JSC-12]
gi|410711884|gb|EKQ69390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Oscillatoriales cyanobacterium JSC-12]
Length = 363
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 231/377 (61%), Gaps = 25/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R ++A ++ G T+P+P GC++ + G+G+ G AEV A+ G
Sbjct: 6 DRAMMQRCLELAKRATGKTAPNPLVGCVVVQGE-TIVGQGFHPRAGEPHAEVFALREAGD 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP +G + A++ AG+ RVVVG+ +P + G + L+ G++
Sbjct: 65 RAKGATLYVNLEPCSHYGRTPPCADAVIAAGVKRVVVGMIDPNPKVAGNGIAKLQKAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E+ C +N +HR R PF + KYAMTLD G
Sbjct: 125 VTVGVEE----------TDCQDLNEAFVHRIVQRQPFGILKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA +GH+AW+SS +R V LR R DA++VGGNTVR+DNP LT+R TP+R+V+
Sbjct: 163 KIAARTGHSAWVSSDAARAEVHKLRARCDAIIVGGNTVRQDNPLLTSRRPD-QTPLRVVM 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L LP +ANLW+ + APT+V TQ A Q L S+GVE++E L VM + +D
Sbjct: 222 TRSLELPYDANLWNTTIAPTLVFTQPDANPDLQSKLRSQGVEIIEVKPLTPTIVMSHLYD 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+LS+LWECGGTLAA AI+ G + K+FAF+APKIIGG +AP+P+ LG+ +M+ A L
Sbjct: 282 RGFLSVLWECGGTLAARAIAEGTVQKIFAFIAPKIIGGADAPSPIGNLGLTKMTDAYVLE 341
Query: 404 DICYEQVGPDMLISGFL 420
+ + VGPD+L+ G+L
Sbjct: 342 RVRWRTVGPDLLVEGYL 358
>gi|428203269|ref|YP_007081858.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pleurocapsa
sp. PCC 7327]
gi|427980701|gb|AFY78301.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pleurocapsa
sp. PCC 7327]
Length = 377
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 232/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R+ +A K+ G TSP+P G +I GK+ G+G+ G AEV A+
Sbjct: 17 DRQMMRQCLQLARKAIGKTSPNPMVGAIIVRD-GKIVGKGFHPKAGQPHAEVFALREAKE 75
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + HG AL+ AG+ +VVVG+ +P + G + L+ G++
Sbjct: 76 LAKGATIYVNLEPCNHHGRTPPCTEALIAAGVAKVVVGMVDPDPRVAGGGIERLKRAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + G +EE ++C +N +HR + PF + KYAMTLD G
Sbjct: 136 V-IAG-------VEE--EACRQLNEAFVHRTLYKRPFGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA++GH+AW++ K SR V+ +R DAV+VGGNTVR+DNP LT H P+R+V+
Sbjct: 174 KIAATTGHSAWVTGKESRHLVYQVRSACDAVIVGGNTVRQDNPHLTTHQVASHNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ LNLPE+ANLW+ +A T++ T+ G+ + QK L ++GVE+VE ++L+ V ++ +D
Sbjct: 234 SRRLNLPEQANLWNTDEAATLIFTEVGSNPELQKQLLTKGVEIVEMELLSPLSVAKHLYD 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG S+LWECGGTLAA AI+ I K+ AF+APKIIGG+ AP+PV +LG+ M++AL L
Sbjct: 294 RGLSSVLWECGGTLAAEAIAQQTIQKIMAFIAPKIIGGQTAPSPVGDLGLERMTEALQLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ + D LI G+L
Sbjct: 354 RVTMRAIASDFLIEGYL 370
>gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
Length = 362
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 234/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ ++A ++AG TSP+P G +I G+V GEG+ G AEV A++
Sbjct: 6 DREMMQHCINLARQAAGKTSPNPMVGAVIVKD-GQVIGEGFHPKAGQPHAEVFALKQAAE 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+++EP + +G AL++A + +VV+G+ +P + G V+ L+ G++
Sbjct: 65 QAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQEAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +EE +C +N IHR S+ PF + KYAMTLD G
Sbjct: 125 V-VVG-------VEE--DACRRLNEGFIHRVLSKKPFGILKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SGH+AWI+ + SR V LR DAV++GGNTVR+DNP LT+ H P+R+V+
Sbjct: 163 KIATTSGHSAWITGEASRRLVHHLRASCDAVIIGGNTVRQDNPHLTSHGVSSHNPLRVVM 222
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++LNLP EA+LW+ S PT+V TQ G QK L R VEV+E L+ +VM + ++
Sbjct: 223 SRSLNLPLEAHLWETSQVPTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYE 282
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ S+LWECGG LAA AI+ G++ KV AF+APKIIGG AP+PV +LG+ +M++AL L
Sbjct: 283 RGFSSVLWECGGILAARAIAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEKMTEALQLE 342
Query: 404 DICYEQVGPDMLISGFL 420
+ + Q+ D +I G+L
Sbjct: 343 KVTFHQIENDFVIEGYL 359
>gi|390438173|ref|ZP_10226665.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis sp. T1-4]
gi|389838401|emb|CCI30789.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis sp. T1-4]
Length = 365
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGSVIVQE-GTIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+AWI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSAWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ A K Q+ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDANVKLQQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIKAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
Length = 388
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 230/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DAA +RR ++A + G T+P+P G I G V GEG+ G AEV A+ G
Sbjct: 31 DAAMMRRCIELARCALGKTAPNPLVGSAI-VRDGLVVGEGFHPGAGMPHAEVFALREAGE 89
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S AL+ AG+ +VVVG+ +P + G + LR G+
Sbjct: 90 KALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLREAGI- 148
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
++ ++C +N IHR R PF + KYAMTLD G
Sbjct: 149 ---------EVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLD------------G 187
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SSGH+AW++ + +R +V LR DAV+VGGNTVR DNP+LT+ G H P+R+V+
Sbjct: 188 KIATSSGHSAWVTGEEARSQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEGRHNPLRVVM 247
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP+ + LW+ DA T+V+TQ G +F+++L SRGVEVV+ L M Y +D
Sbjct: 248 SRTLDLPKSSRLWETGDASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYD 307
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LAASAI+ G + K+ AF+APKI+GG+ +P+PV +LG M++A+ L
Sbjct: 308 RSFLSVLWECGGILAASAIADGSVQKILAFIAPKIVGGQGSPSPVGDLGFARMTEAIALE 367
Query: 404 DICYEQVGPDMLISGFLQ 421
+ + VG D L+ G+L+
Sbjct: 368 RVSWHSVGADCLVEGYLK 385
>gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
Length = 365
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGAVIVQE-GTIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ CL +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECLQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT++ TQ + K Q+ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPSSAHLWDTSQFPTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLK 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|425465787|ref|ZP_18845094.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9809]
gi|389831906|emb|CCI24934.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9809]
Length = 365
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGAVIVQE-GTIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVTGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ CL +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECLQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT++ TQ + K Q+ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLK 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|428208981|ref|YP_007093334.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chroococcidiopsis thermalis PCC 7203]
gi|428010902|gb|AFY89465.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chroococcidiopsis thermalis PCC 7203]
Length = 389
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/383 (43%), Positives = 233/383 (60%), Gaps = 24/383 (6%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ A D ++R +A ++ G T+P+P G ++ GK+ GEG+ G AEV A
Sbjct: 8 RVGTAFDREMMQRCLTLARRALGRTAPNPLVGAVVVQD-GKIVGEGFHPGAGQPHAEVFA 66
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
++A G +GAT Y+++EP + +G + AL+ AG+ +VVVG+ +P + G V L
Sbjct: 67 LKAAGDRAQGATVYVSLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGVARL 126
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
RS G++V V+G +EEA C +N IHR + PF +FKYAMTLD
Sbjct: 127 RSAGIEV-VVG-------VEEA--DCRQLNEGFIHRMVYQRPFGIFKYAMTLD------- 169
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +SGH+AWI++ +R+ V LR DA++VGGNTVR DNPRLT R
Sbjct: 170 -----GKIATTSGHSAWITNPAAREEVQQLRIACDAIIVGGNTVRIDNPRLTIRQIDAPN 224
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV 337
P+R+V+++TL+LP A+LW T+V+TQ GA Q L RGVE++E D L
Sbjct: 225 PLRVVMSRTLDLPTTAHLWQTETVSTLVMTQAGANPDMQMLLRDRGVEILELDSLTPTAA 284
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M + + RG LS+LWECGGTLAA AI+ G + K+FAF+APKIIGG APTPV +LG +M+
Sbjct: 285 MAHLYQRGCLSVLWECGGTLAAEAIAQGTVQKIFAFIAPKIIGGSTAPTPVGDLGFTQMT 344
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
QA+ L + + VG D L+ G+L
Sbjct: 345 QAITLERVQWRTVGSDCLMEGYL 367
>gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
Length = 448
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 245/422 (58%), Gaps = 36/422 (8%)
Query: 8 QSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHP 67
++D+ P +++ + S V + +P K D A ++R +A ++ G TSP+P
Sbjct: 49 RTDKSPPGIEETA----LVRSPVESDSPNKDKIGSDFDQAMMQRCLALARRALGRTSPNP 104
Query: 68 NFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG--------SFCRGATAYLNMEPGD 119
G ++ G++ GEG+ G AEV A++A G + GAT Y+N+EP +
Sbjct: 105 LVGAVVVKD-GEIVGEGFHPCAGEPHAEVFALKAAGVGADSTQENRACGATVYVNLEPCN 163
Query: 120 CHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
HG S AL+ AG+ +VVVGI +P + G + LR+ ++
Sbjct: 164 HHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGGIARLRAA----------GVEVVVGV 213
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
++C +N IHR + P + KYAMTLD GKIA +SGH+AW++++
Sbjct: 214 EAQACYQLNEAFIHRIVHKRPLGILKYAMTLD------------GKIATTSGHSAWVTNQ 261
Query: 239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV 298
+R V LR DA++VGGNTVR+DNP LT+ G H P+R+V+++ LNLPE+A LWD
Sbjct: 262 DARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVGAHNPLRVVMSRQLNLPEDARLWDT 321
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLA 358
++APT+V T+ G+ FQ +L +GVEVVE L VM +DRG+ S+LWECGGTLA
Sbjct: 322 AEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWECGGTLA 381
Query: 359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
ASAI+ G + K+ AF+APKIIGG +A TPV +LG M++AL L + + VG D L+ G
Sbjct: 382 ASAIAQGAVQKILAFIAPKIIGGSHAATPVGDLGFTIMTEALTLERVSWRVVGSDCLVEG 441
Query: 419 FL 420
+L
Sbjct: 442 YL 443
>gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
raciborskii CS-505]
gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
raciborskii CS-505]
Length = 385
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 232/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA ++R ++A + G TSP+P G ++ G++ GEG+ G AEV A+ A G
Sbjct: 17 DALMMQRCLELARLALGRTSPNPLVGAVVVKD-GEIVGEGFHPRAGEPHAEVFALRAAGE 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + +G S +L+ AG+ +VVVG+ +P + G + LR+ G++
Sbjct: 76 RARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V II ++C +N ++R + P + KYAMTLD G
Sbjct: 136 V----------IIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA++SGH+ WI++ +R V LR DAV+VGGNTVRRDNP LT G+ P+R+V+
Sbjct: 174 KIASNSGHSTWITNSQARSEVHQLRAACDAVIVGGNTVRRDNPHLTTHQQTGYNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+ +LNLPE A+LWD APT+V+TQ G+ FQ+ L +GVEV+E +L VM + ++
Sbjct: 234 SASLNLPENAHLWDTRVAPTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYE 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ ++LWECGGTLAA AI+ + KV AF+APKIIGG +APTPV +LG+ M+++L L
Sbjct: 294 RGFCTVLWECGGTLAARAIAENAVQKVLAFIAPKIIGGIDAPTPVGDLGLSSMTESLVLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ + +G D L+ G+L
Sbjct: 354 RVNWRTIGCDFLVEGYL 370
>gi|425442242|ref|ZP_18822497.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9717]
gi|389716840|emb|CCH98984.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9717]
Length = 365
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGAVIVQE-GIIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+++AGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIMRAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ A K Q+ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPSSAHLWDTSQFPTLVYTQIDANVKLQQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+ASAI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSASAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
Length = 392
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 230/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G T+P+P GC+I G++ GEG+ G AEV A+ A G
Sbjct: 25 DQIMMQRCLTLARQAQGQTAPNPLVGCVI-VKDGEIVGEGFHPKAGEPHAEVFALRAAGD 83
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S A+V+AGI RVVVG+ +P + G + LR+ G++
Sbjct: 84 RAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGIE 143
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E++ +C +N IHR T PF + KYAMTLD G
Sbjct: 144 VTVGVEEM----------ACRDLNEAFIHRITYHRPFGILKYAMTLD------------G 181
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + GH+AWI+ +R V LR D V+VGGNTVRRDNP+LT G P+RIV+
Sbjct: 182 KIATAKGHSAWITDAAARTEVHRLRAGCDGVIVGGNTVRRDNPQLTLHEVEGRNPLRIVM 241
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP +A+LW A T+V+TQ G + + L ++GVEVV D+L VM+Y +D
Sbjct: 242 SRSLDLPSQAHLWQTQAAATLVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYD 301
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG L++LWECGG LAA AI+ G + KV+AF+APKIIGG AP+PV +LG+ M++AL L
Sbjct: 302 RGLLAVLWECGGRLAARAIAEGAVQKVWAFIAPKIIGGDQAPSPVGDLGLTTMTEALQLE 361
Query: 404 DICYEQVGPDMLISGFL 420
+ + +G D L+ G+L
Sbjct: 362 RVQWRTIGSDCLVEGYL 378
>gi|428226814|ref|YP_007110911.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Geitlerinema
sp. PCC 7407]
gi|427986715|gb|AFY67859.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Geitlerinema sp. PCC 7407]
Length = 387
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/381 (44%), Positives = 229/381 (60%), Gaps = 24/381 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A +RR +A ++ G T+P+P G +I G++ GEG+ G AEV A+ A G
Sbjct: 29 DRALMRRCIALACRALGQTAPNPLVGSVI-VKDGEIVGEGFHPQAGQPHAEVFALRAAGD 87
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP HG + A++ AGI +VVVG +P + GQ + LR+ GL+
Sbjct: 88 RALGATLYVNLEPCSHHGRTPPCADAILAAGIAKVVVGSLDPNPQVAGQGIARLRAAGLE 147
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +E A +C ++N HR T R PF + KYAMTLD G
Sbjct: 148 V-VVG-------VEAA--ACQILNEAFFHRITHRRPFGILKYAMTLD------------G 185
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+ GH+AW++S +R V LR DAV+VGGNTVRRDNP LT+ P+R+V+
Sbjct: 186 KIAATGGHSAWVTSPGARREVHHLRATCDAVIVGGNTVRRDNPHLTSHDVSDRHPLRVVM 245
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP EANLW APT+V + GA + LA +GVEVV + VM +
Sbjct: 246 SRRLDLPTEANLWRSQVAPTVVFGEVGANEVVHQALAKQGVEVVLLETCTPEAVMADLYR 305
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG LS+LWECGGTLAA AI+ G + KV+AFVAPK+IGG APTPV ELG+ +M+ A+ L
Sbjct: 306 RGLLSVLWECGGTLAAQAIAQGAVQKVWAFVAPKLIGGPAAPTPVGELGLTQMTDAIALD 365
Query: 404 DICYEQVGPDMLISGFLQPIP 424
+ VGPD+L+ G+L P
Sbjct: 366 PVRVRSVGPDLLVEGYLPAAP 386
>gi|425451837|ref|ZP_18831656.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 7941]
gi|389766648|emb|CCI07746.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 7941]
Length = 365
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D I+R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMIQRCLTLARQALGRTSPNPLVGSVIVQE-GTIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+AWI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSAWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ A K ++ L +GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDANVKLKQQLLIKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIKAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|443327399|ref|ZP_21056025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xenococcus
sp. PCC 7305]
gi|442793021|gb|ELS02482.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xenococcus
sp. PCC 7305]
Length = 359
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 165/373 (44%), Positives = 237/373 (63%), Gaps = 24/373 (6%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++R +A+K+AG TSP+P G +I GK+ GEGY G AE+ A++ G RG
Sbjct: 1 MQRCLQLANKAAGRTSPNPLVGSVIVKD-GKIIGEGYHPQAGQPHAEIFALKDAGESARG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+N+EP + HG S AL+ AG+TRVVVG+ + + G ++ LR+ G++V V
Sbjct: 60 ATLYVNLEPCNHHGRTPPCSEALIAAGVTRVVVGMIDCDPRVAGGGIKKLRNAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
IEEA +C +N IHR T + PF + KYAMTLD GKIAA
Sbjct: 120 --------IEEA--ACRQLNEAFIHRITHKKPFGILKYAMTLD------------GKIAA 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
++GH+AW++ K++R +V LR DAV++GGNTVR+DNP+LT + H P+R+V++++L
Sbjct: 158 TTGHSAWVTGKSARHQVHQLRSTCDAVIIGGNTVRKDNPQLTTHNLTEHNPLRVVMSRSL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
+LP E NLW V A T++ TQ+ + QK L ++GVE+ E + + + VM F++RG
Sbjct: 218 DLPTECNLWQVDIAQTLIFTQKNSNPSLQKKLTAQGVEICELEAVTPQAVMNNFYNRGLS 277
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
ILWECGG LAA+AI+ G I KV AF+APKIIGG AP+PV +LG +M++AL L I
Sbjct: 278 KILWECGGVLAANAIAGGAIQKVMAFIAPKIIGGNIAPSPVGDLGFTKMTEALQLERIEI 337
Query: 408 EQVGPDMLISGFL 420
+ + D+LI G+L
Sbjct: 338 QTIDQDILIKGYL 350
>gi|428213904|ref|YP_007087048.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Oscillatoria
acuminata PCC 6304]
gi|428002285|gb|AFY83128.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Oscillatoria
acuminata PCC 6304]
Length = 385
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 231/378 (61%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A +RR ++A + G T+P+P G +I G++ EG+ G AEV A++ G
Sbjct: 28 DRAMMRRCIELAQLALGKTAPNPLVGSVIVKE-GQIISEGFHPGAGHPHAEVFALQGAGE 86
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S AL+ A + +VVVG+ + + G ++ LRS G+
Sbjct: 87 QAAGATVYVNLEPCNHYGRTPPCSEALIAARVAKVVVGMVDADPRVSGGGIQRLRSAGI- 145
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
++ ++C +N +HR PF + KYAMTLD G
Sbjct: 146 ---------EVVVGVEEEACRQLNEAFLHRVIYHRPFGILKYAMTLD------------G 184
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+ WI+S +R V LR DAV++GGNTVR+DNP+LT+ H G P+R+V+
Sbjct: 185 KIATTTGHSTWITSTEARHEVHTLRAVCDAVIIGGNTVRQDNPQLTSHHTGTQNPLRVVM 244
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T+TL+LP+ ANLW+VS+A T+V+TQ+GA Q++L ++GVEV+E D L MEY +
Sbjct: 245 TRTLDLPKAANLWEVSEAGTLVLTQKGANPDMQQWLLNKGVEVIELDPLTPAIAMEYLYQ 304
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGG LAA AI+ G + K+ AF+APKI+GG+ AP+PV LG+ +M AL L
Sbjct: 305 REFLSVLWECGGLLAARAIADGAVQKILAFIAPKIVGGQAAPSPVGNLGLTQMGDALTLD 364
Query: 404 DICYEQVGPDMLISGFLQ 421
+ + +G D L+ G+L+
Sbjct: 365 RVKWRTIGTDCLVEGYLK 382
>gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
Length = 360
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G++ GEG+ G AE+ A+
Sbjct: 7 DQQMMQRCLQLARQALGQTSPNPLVGSVI-VQNGEIVGEGFHPKAGEPHAEIFALRQAQE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+++EP + +G + AL+ AG+++VVVG+ +P + G+ V L+ G++
Sbjct: 66 RAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQESGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +EE+ +C +N IHR P + KYAMTLD G
Sbjct: 126 V-VVG-------VEES--ACRQLNEAFIHRILHHQPLGILKYAMTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA++GH+AWI+ SR V +R DAV+VGGNT+R+DNP LT G P+R+V+
Sbjct: 164 KIAATTGHSAWITGTASRQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGVNPLRVVM 223
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP EANLW APT+V+T+RG K Q L RGVEV+E + VM+ ++
Sbjct: 224 SKTLDLPSEANLWQTDIAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG S+LWECGGTLAA AI+ G+I K+ AF+APKIIGG AP P+ +LG+ +M+QAL L
Sbjct: 284 RGLSSVLWECGGTLAAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQ 343
Query: 404 DICYEQVGPDMLISGFL 420
+ +Q+ D+LI G+L
Sbjct: 344 RVTLQQIDGDILIEGYL 360
>gi|425462302|ref|ZP_18841776.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9808]
gi|389824616|emb|CCI26229.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9808]
Length = 365
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVI-VQEGIIIGEGFHPEAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V+AGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECHQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+AWI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSAWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ A K ++ L ++GVEV+E + VME
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDANVKLKQQLLTKGVEVIELTAVTPTSVMENLDQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 386
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 29 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GIIIGEGFHPGAGQPHAEVLALRQAAE 87
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V+AGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 88 KARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAGIE 147
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C VN IHR T++ PF + KYAMTLD G
Sbjct: 148 TLVGVEE----------SECRQVNQGFIHRITAKKPFGILKYAMTLD------------G 185
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 186 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLCNHNPLRVVM 245
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K ++ L ++GVEV+E + VME +
Sbjct: 246 TRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQ 305
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 306 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 365
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 366 NVTVNYLNPDILIEGYLQ 383
>gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
Length = 368
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 229/377 (60%), Gaps = 23/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + R ++A ++ G T+P+P G ++ + GEG+ G AEV A+ G
Sbjct: 14 DRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDAGE 73
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + +G + AL++A + +VVVG+ +P + GQ V L+ G++
Sbjct: 74 QAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAGIE 133
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ +++C +N IHR P +FKYAMTLD G
Sbjct: 134 V----------IVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLD------------G 171
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AWI+S T+R +V LR DAV+VGGNTVRRDNP LT + G P+R+V+
Sbjct: 172 KIATTTGHSAWITSPTARQQVHQLRVACDAVIVGGNTVRRDNPHLTTHNQGEPNPLRVVM 231
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP +ANLWD+++A T+V T + A Q+ L +GVEVV L + VM + ++
Sbjct: 232 SRKLDLPLQANLWDITEANTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYE 291
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R +LS+LWECGGTLAA AI+ G I K+ AF+APKIIGGK A +PV +LG+ +M++AL L
Sbjct: 292 RQFLSVLWECGGTLAAQAIAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLK 351
Query: 404 DICYEQVGPDMLISGFL 420
+ +G D LI G+L
Sbjct: 352 RVTLHSIGSDYLIEGYL 368
>gi|440752274|ref|ZP_20931477.1| riboflavin biosynthesis protein RibD [Microcystis aeruginosa
TAIHU98]
gi|440176767|gb|ELP56040.1| riboflavin biosynthesis protein RibD [Microcystis aeruginosa
TAIHU98]
Length = 365
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGSVIVQE-GTIIGEGFHPEAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA++GH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATTGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K Q+ L +GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLQQQLLIKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|443657773|ref|ZP_21131958.1| riboflavin biosynthesis protein RibD [Microcystis aeruginosa
DIANCHI905]
gi|443333112|gb|ELS47687.1| riboflavin biosynthesis protein RibD [Microcystis aeruginosa
DIANCHI905]
Length = 365
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GIIIGEGFHPGAGQPHAEVLALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V+AGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C VN IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQVNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLCNHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K ++ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|422301241|ref|ZP_16388610.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9806]
gi|389788576|emb|CCI15681.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9806]
Length = 365
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GIIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRAACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K ++ L ++GVEV+E + VME
Sbjct: 225 TRSLDLPSSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLDQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
Length = 376
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 230/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA ++R +A + G TSP+P G ++ G++ GEG+ G EV A+ A G
Sbjct: 17 DALMMQRCLQLARLALGRTSPNPLVGAVVVKD-GEIVGEGFHPRAGEPHGEVFALRAAGE 75
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + +G S +L+ AG+ +VVVG+ +P + G + LR+ G++
Sbjct: 76 RARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ ++C +N ++R + P + KYAMTLD G
Sbjct: 136 V----------IVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA++SGH+ WI++ +R V LR DAV+VGGNTVRRDNP+LT G+ P+R+V+
Sbjct: 174 KIASNSGHSTWITNNQARSEVHQLRAACDAVIVGGNTVRRDNPQLTTHQQAGYNPLRVVM 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+ +LNLPE A+LWD APT+V+TQ G+ FQ+ L +GVEV+E +L VM + ++
Sbjct: 234 SASLNLPENAHLWDTGVAPTLVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYE 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ ++LWECGGTLAA AI+ + KV AF+APKIIGG APTPV +LG+ M+++L L
Sbjct: 294 RGFCTVLWECGGTLAARAIAENAVQKVLAFIAPKIIGGIYAPTPVGDLGLNSMTESLVLE 353
Query: 404 DICYEQVGPDMLISGFL 420
+ + VG D L+ G+L
Sbjct: 354 RVNWRTVGCDCLVEGYL 370
>gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 429
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 231/388 (59%), Gaps = 27/388 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA + R ++A G +PHP C + G V E QG+ AE+ +
Sbjct: 55 DAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACADEMRR 114
Query: 105 FCRGAT--------AYLNMEP--GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAV 154
RGAT Y+N+EP G+ G+ +V AL G TR VVG+ +PL LRG+AV
Sbjct: 115 --RGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLRGRAV 172
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
RALR +G++V VL + + E AR +C N L++R + +PFSV+KYAMTLD
Sbjct: 173 RALRERGIEVCVLEGEAEGFEGEAAR-ACRETNEALLYRVATGLPFSVYKYAMTLD---- 227
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
GKIA +GH++W++ +R+ VF R R+DAVVVGG TVR+DNPRLT R
Sbjct: 228 --------GKIATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCREET 279
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
G P R+VLT++L+LPE+A LW+V APTIV T +G + +FQ L ++GVEVVEFD L
Sbjct: 280 GFQPARVVLTRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELT 339
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN-APTPVSELG 392
+Y RG+L WECGG LAA A+ SG+ H+V AF+APK++GG APTP+ LG
Sbjct: 340 PLAAAQYMFKRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLG 399
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFL 420
+ M AL L + E G D+LI G++
Sbjct: 400 IEAMHDALPLSGVRLEIYGRDILIRGYV 427
>gi|425447718|ref|ZP_18827701.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9443]
gi|389731643|emb|CCI04313.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9443]
Length = 365
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GIIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASVGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITTKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K ++ L ++GVEV+E + VME
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLDQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG NAPT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGINAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|427735139|ref|YP_007054683.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rivularia
sp. PCC 7116]
gi|427370180|gb|AFY54136.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rivularia
sp. PCC 7116]
Length = 399
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 236/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RR ++A + G TSP+P G +I G++ GEG+ G AEV A++A G
Sbjct: 43 DRTMMRRCLELARRGLGRTSPNPMVGAVI-VKNGEIIGEGFHPRAGEPHAEVFALKAAGD 101
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + HG S ALV AG+ +VVVG+ +P + G ++ L+ G++
Sbjct: 102 NARGATIYVSLEPCNHHGRTPPCSEALVAAGVVKVVVGMVDPNPLVAGGGIQRLQEAGIE 161
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V S + EEA C +N IHR + P + KYAMTLD G
Sbjct: 162 V-------VSGVEEEA---CRKLNEGFIHRILYKQPLGILKYAMTLD------------G 199
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AW++++ +R V LR SDAV+VGGNTVR+DNPRLT+R G H P+R+V+
Sbjct: 200 KIATTTGHSAWVTNQDARTVVRQLRAGSDAVIVGGNTVRQDNPRLTSRLAGAHNPLRVVM 259
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP EA+LW ++PT+V+T+ GA+ Q+ L +GV+VVE L M Y +D
Sbjct: 260 SRTLDLPREAHLWQTQESPTLVLTELGAKPDLQENLRKQGVKVVELSPLTPEKAMAYLYD 319
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G+ S+LWECGG LAA+AI+ G + KV AF+APKIIGG NAPTPV +LG+ M+QAL L
Sbjct: 320 LGFCSVLWECGGILAANAIAQGAVQKVLAFIAPKIIGGSNAPTPVGDLGLTTMTQALSLE 379
Query: 404 DICYEQVGPDMLISGFL 420
+ VG D L+ G+L
Sbjct: 380 RVEMRIVGSDCLVEGYL 396
>gi|425457416|ref|ZP_18837119.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9807]
gi|389801231|emb|CCI19578.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9807]
Length = 365
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GIIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASVGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+AWI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSAWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ A K ++ L ++GVEV+E + VME
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDANVKLKQQLLTKGVEVIELTEVTPTLVMENLDQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MSQAL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIKAPTAVGDLGFQLMSQALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|425470212|ref|ZP_18849082.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9701]
gi|389884231|emb|CCI35447.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9701]
Length = 365
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRTMMQRCLTLARQALGRTSPNPLVGSVIVQE-GTIIGEGFHPGAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V+AGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K Q+ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQINSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MS+AL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSEALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
BP-1]
gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
BP-1]
Length = 379
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 244/400 (61%), Gaps = 31/400 (7%)
Query: 33 SAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTK 92
SAPV + + DA Y+ R ++A ++ G T+P+P GC+I + G+V GEG+ G
Sbjct: 3 SAPVVEEIATI-DAQYMGRCLELAARAKGRTAPNPLVGCVI-VAEGRVIGEGFHPKAGEP 60
Query: 93 PAEVQAV----EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQ 147
AEV A+ E+ AT Y+N+EP + +G + A++ AGI +VVVG+ +P
Sbjct: 61 HAEVFALRSVSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNP 120
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
+ G V LRS G++V V + EA C +N +HR + PF + KYAM
Sbjct: 121 QVAGAGVERLRSAGIEVTVG--------VREA--DCQRLNEAFVHRVRYQRPFGILKYAM 170
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
TLD GKIA+ +GH+ W+S + +R V LR DAV+VGGNTVR DNP
Sbjct: 171 TLD------------GKIASRAGHSLWVSGEAARAMVHQLRSECDAVIVGGNTVRLDNPL 218
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
LT+RHG H P+R+V+++TL+LP +A+LWD + A T+VVT + L +RGVEVV
Sbjct: 219 LTSRHG--HNPLRVVMSRTLDLPPDASLWDTTAAATLVVTSASPQHPLIPQLQARGVEVV 276
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
+ L VM H RG ++ LWECGG+LAA+AI+ G++ KV+AF+APKIIGG +APTP
Sbjct: 277 HREPLTPTAVMALLHQRGIMTALWECGGSLAAAAIAEGMVQKVWAFIAPKIIGGFDAPTP 336
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLM 427
V++LG+ +M +AL L D+ ++ VG D+L G+L P ++
Sbjct: 337 VADLGLTKMHEALYLEDVTWQTVGEDILAVGYLPAKPPVL 376
>gi|425437982|ref|ZP_18818394.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9432]
gi|389676921|emb|CCH94115.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Microcystis aeruginosa PCC 9432]
Length = 365
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 227/378 (60%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G + GEG+ G AEV A+
Sbjct: 8 DRKMMQRCLTLARQALGRTSPNPLVGSVIVQE-GTIIGEGFHPEAGQPHAEVFALRQAAE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+VQAGI +VVVG+ +P + G+ ++ L S G++
Sbjct: 67 KARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V E+ C +N IHR T++ PF + KYAMTLD G
Sbjct: 127 TLVGVEE----------SECRQLNQGFIHRITAKKPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA+SGH+ WI+S SR V LR DA++VGG+TVR+DNP LT H P+R+V+
Sbjct: 165 KIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L+LP A+LWD S PT+V TQ + K ++ L ++GVEV+E + VME +
Sbjct: 225 TRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQ 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ +LWECGG L+A+AI+ G++ K+ AF+APKIIGG APT V +LG MS+AL L
Sbjct: 285 RGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIKAPTAVGDLGFQLMSEALQLE 344
Query: 404 DICYEQVGPDMLISGFLQ 421
++ + PD+LI G+LQ
Sbjct: 345 NVTVNYLNPDILIEGYLQ 362
>gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
Length = 363
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 230/377 (61%), Gaps = 25/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RR ++A ++AG T+P+P G +I G++ GEG+ G AE+ A+ A
Sbjct: 11 DTDLMRRCCELAAQAAGHTAPNPLVGSII-LRDGEIVGEGFHPKAGEPHAEIFALRAASD 69
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + G S A+++AGI RVV+G+R+P +G + LR G++
Sbjct: 70 RAQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPKAKG-GIEKLRQAGIE 128
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G IE R C +N IHR T PF + KYAMTLD G
Sbjct: 129 V-VVG-------IEVDR--CHQLNEAFIHRVTHNSPFGILKYAMTLD------------G 166
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AWIS +SR RV LR R DAV+VGGNTVR+DNP LT+ G P+R+V+
Sbjct: 167 KIATTAGHSAWISGPSSRQRVHQLRSRCDAVIVGGNTVRQDNPNLTSHGEGTRNPLRVVM 226
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP + NLW APT+V TQ A + + L +GVE+V + L VM + +
Sbjct: 227 SRHLDLPSDRNLWKTEVAPTLVFTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQ 286
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG +S+LWECGG LAA AI++G + K++AF+APK+IGG+ AP+P+ ELG M++AL L
Sbjct: 287 RGAMSVLWECGGVLAAKAIAAGSVQKIWAFIAPKLIGGQRAPSPIGELGFTAMTEALALH 346
Query: 404 DICYEQVGPDMLISGFL 420
+ VG D L+ G+L
Sbjct: 347 SVSITPVGQDFLLKGYL 363
>gi|428301364|ref|YP_007139670.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Calothrix
sp. PCC 6303]
gi|428237908|gb|AFZ03698.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Calothrix
sp. PCC 6303]
Length = 390
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/377 (44%), Positives = 239/377 (63%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R ++A ++ G TSP+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 32 DRVMMQRCLELARRALGMTSPNPLVGAVIVKD-GKIIGEGFHPRAGEPHAEVFALRDAGK 90
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+++EP + +G S AL+ AG+ RVVVG+ +P + G + LR G++
Sbjct: 91 RSHGATAYVSLEPCNHYGRTPPCSEALINAGVARVVVGMMDPNPLVAGGGIARLRDAGIE 150
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +C +N IHR + P + KYAMTLD G
Sbjct: 151 VLVG--------VEEA--ACRKLNEGFIHRMLYQRPLGILKYAMTLD------------G 188
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++G++AW++++ SR V LR DAVVVGGNTVR+DNP LT+ G H P+R+V+
Sbjct: 189 KIATTTGNSAWVTNQESRQVVHQLRVACDAVVVGGNTVRQDNPYLTSHQVGVHNPVRVVM 248
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP A LW +++APT+V+T+ GA FQ L ++GVEVVE +L+ M YF++
Sbjct: 249 SRTLDLPVNARLWQITEAPTLVLTETGANPDFQAMLRNQGVEVVELPLLSPDAAMVYFYE 308
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG+ ++LWECGGTLAASAI+SG I K+ AF+APKIIGG +APTPV LG+ M++AL L
Sbjct: 309 RGFCNVLWECGGTLAASAIASGAIQKILAFIAPKIIGGDHAPTPVGNLGLTSMNEALTLE 368
Query: 404 DICYEQVGPDMLISGFL 420
+I +G D+LI G+L
Sbjct: 369 NIDTRLIGSDLLIEGYL 385
>gi|427716195|ref|YP_007064189.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Calothrix
sp. PCC 7507]
gi|427348631|gb|AFY31355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Calothrix
sp. PCC 7507]
Length = 395
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 235/377 (62%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RR ++A ++ G TSP+P G +I G++ GEG+ G AEV A+ A G
Sbjct: 37 DRLMMRRCLELARQALGRTSPNPLVGAVIVKD-GEIIGEGFHPRAGEPHAEVFALRAAGD 95
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + +G S L+QAG+++VVVG+ +P + G + L + G++
Sbjct: 96 AARGATIYVSLEPCNHYGRTPPCSEGLIQAGVSKVVVGMVDPNPLVAGGGIARLCAAGIE 155
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ +++C +N +HR + P + KYAMTLD G
Sbjct: 156 V----------VVGVEQEACQQLNEGFVHRILHKRPLGILKYAMTLD------------G 193
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SGH+AW++++ +R V LR DAV+VGGNTVR+DNP LT+ G H P+R+V+
Sbjct: 194 KIATTSGHSAWVTNQDARSEVHLLRASCDAVIVGGNTVRQDNPYLTSHQVGFHNPLRVVM 253
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ LNLPE A LW+ ++APT+V+T+ G+ F++ L +GVEVVEF L VM + +D
Sbjct: 254 SRQLNLPENARLWETTEAPTLVLTEVGSSPDFRELLLKQGVEVVEFTSLTPEQVMAHLYD 313
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG S+LWECGGTLAASAI+ G + K+ AF+APKIIGG APTPV +LG M++AL L
Sbjct: 314 RGVCSVLWECGGTLAASAIAQGAVQKILAFIAPKIIGGNYAPTPVGDLGFTSMTEALPLE 373
Query: 404 DICYEQVGPDMLISGFL 420
+ + VG D L+ G+L
Sbjct: 374 RVRWRVVGSDCLVEGYL 390
>gi|443310947|ref|ZP_21040584.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechocystis sp. PCC 7509]
gi|442779007|gb|ELR89263.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechocystis sp. PCC 7509]
Length = 389
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/391 (42%), Positives = 239/391 (61%), Gaps = 26/391 (6%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D ++R +A + G T+P+P G ++ GK+ GEG+ G AEV A+ A
Sbjct: 19 AFDKEIMQRCLSLARNALGRTAPNPLVGSVVVLD-GKIIGEGFHPGAGQPHAEVFALIAA 77
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G+ GAT Y+N+EP + +G S A+V + +++VVVG+ +P + G + LRS G
Sbjct: 78 GNLAVGATLYVNLEPCNHYGRTPPCSEAVVASQVSKVVVGMVDPDPRVAGGGIARLRSAG 137
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V+G +EEA C +N IHR + PF + KYAMTLD
Sbjct: 138 IEV-VVG-------VEEA--DCRQLNEAFIHRILYQQPFGILKYAMTLD----------- 176
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA S+GH+AWI+ + +R+ V LR DAV+VGGNTVR DNP+LT+R P+R+
Sbjct: 177 -GKIATSNGHSAWITGEIARNEVHKLRAACDAVIVGGNTVRLDNPKLTSRLADAANPLRV 235
Query: 282 VLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
V++++LNLP A+LW ++ APT+++T+ G R FQ+ L ++GV+VVE + L + M+Y
Sbjct: 236 VMSRSLNLPANAHLWENMEVAPTLILTEVGVNRDFQQLLLAKGVKVVELNPLTPTEAMKY 295
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ G +S+LWECGGTLAA AI+ G + KV AF+APKIIGG A +PV EL + M+QAL
Sbjct: 296 LYSLGLMSVLWECGGTLAAKAIACGAVQKVLAFIAPKIIGGNQAFSPVGELDLTNMTQAL 355
Query: 401 DLIDICYEQVGPDMLISGFLQPIPDLMPVIP 431
L + VG D L+ G+L PI + V P
Sbjct: 356 TLERYHWRSVGADYLMEGYL-PIKQIAKVDP 385
>gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
Length = 360
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 230/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G TSP+P G +I G++ GEG+ G AE+ A+
Sbjct: 7 DQQMMQRCLQLARQALGQTSPNPLVGSVI-VQNGEIVGEGFHPKAGEPHAEIFALRQAQE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+++EP + +G + AL+ AG+++VVVG+ +P + G+ V L+ G++
Sbjct: 66 RAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQESGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +EE+ +C +N IHR P + KYAMTLD G
Sbjct: 126 V-VVG-------VEES--ACRQLNEAFIHRILHHQPLGILKYAMTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA++GH+AWI+ SR V +R DAV+VGGNT+R+DNP LT G P+R+V+
Sbjct: 164 KIAATTGHSAWITGTASRQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGVNPLRVVM 223
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP EANLW A T+V+T+R K Q L +RGVEV+E + VM+ ++
Sbjct: 224 SKTLDLPSEANLWQTDIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG S+LWECGGTLAA AI+ G+I K+ AF+APKIIGG AP P+ +LG+ +M+QAL L
Sbjct: 284 RGLSSVLWECGGTLAAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQ 343
Query: 404 DICYEQVGPDMLISGFL 420
+ +Q+ D+LI G+L
Sbjct: 344 RVTLQQIDGDILIEGYL 360
>gi|434398155|ref|YP_007132159.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Stanieria
cyanosphaera PCC 7437]
gi|428269252|gb|AFZ35193.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 228/381 (59%), Gaps = 24/381 (6%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S + D ++R +A +++G TSP+P G ++ + G + GEG+ G AEV A++
Sbjct: 11 SSSFDCQMMQRCLQLASRASGHTSPNPLVGSVVVQA-GNIVGEGFHPGAGKPHAEVFALQ 69
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
A G +GAT Y+N+EP + +G AL+ A + +VVVG+ +P + G+ + LR
Sbjct: 70 AAGEQAKGATIYVNLEPCNHYGRTPPCTEALIAAQVAKVVVGMVDPNPLVSGKGIERLRD 129
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+G++V I+ ++C +N IHR + PF + KYAMTLD
Sbjct: 130 RGIEV----------IVGVEEEACRQLNEAFIHRILHQRPFGILKYAMTLD--------- 170
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA S+GH+AW+++ SR V LR DA+++GGNTVRRDNP+LT P+
Sbjct: 171 ---GKIATSTGHSAWVTTPASRHLVHQLRSACDAIIIGGNTVRRDNPQLTTHGTSDRNPL 227
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
R+V+++ L+LPE+ LW + A TIV T+ + + L ++GVEVV L + VM+
Sbjct: 228 RVVMSRNLDLPEDCQLWHIDQAATIVFTETNNNSQLRNQLEAKGVEVVSLTALTPQSVMK 287
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ +DR SILWECGG LAA AI+ G + K+ AF+APKIIGG+ AP+PV LG+++M+ A
Sbjct: 288 HLYDRELSSILWECGGILAAQAIADGAVQKIMAFIAPKIIGGQAAPSPVGNLGLIKMTDA 347
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L L +I + + D+LI G+L
Sbjct: 348 LKLENIKLQTIDSDILIEGYL 368
>gi|434387649|ref|YP_007098260.1| riboflavin biosynthesis protein RibD [Chamaesiphon minutus PCC
6605]
gi|428018639|gb|AFY94733.1| riboflavin biosynthesis protein RibD [Chamaesiphon minutus PCC
6605]
Length = 369
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 232/377 (61%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A ++ G T+P+P G +I G+V GEG+ G AEV A+ A G
Sbjct: 7 DRQMMQRCVHLAKQAWGKTAPNPLVGAVI-VKDGEVVGEGFHPGAGQPHAEVFALRAAGD 65
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+++EP + +G +ALV AGI +VVVG+ +P + G + L+ G++
Sbjct: 66 RARGATIYVSLEPCNHYGRTPPCAAALVAAGIGKVVVGMIDPNPLVSGGGIATLQQAGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +E A +C +N + R R P + KYAMTLD G
Sbjct: 126 V-VVG-------VETA--TCEELNEGFVQRIVHRRPLGILKYAMTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SGH+ W+SS+ SR V LR DA+V+GGNT+RRDNP LT+ P+R+V+
Sbjct: 164 KIATDSGHSTWVSSEPSRHYVHHLRAGCDAIVIGGNTLRRDNPYLTSHDPDAPNPLRVVM 223
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T++L++P +A LWD+S APT+VVT+ G + L RGV+V+E D L VM++ +D
Sbjct: 224 TRSLDVPLDAILWDISVAPTLVVTKIGVNPETLARLRDRGVQVLELDALKPVQVMQHLYD 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG LS+LWECGGTLAASAI+ G I KV AF+APKI+GG +AP+PV L + MS A+ L
Sbjct: 284 RGCLSVLWECGGTLAASAIADGAIQKVLAFIAPKIVGGSSAPSPVGNLNIRSMSDAMVLE 343
Query: 404 DICYEQVGPDMLISGFL 420
+ ++Q+G D+LI G+L
Sbjct: 344 RVSWQQIGTDILIQGYL 360
>gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
Length = 364
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 226/380 (59%), Gaps = 24/380 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A + G+TSP+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 8 DQQMMQRCLTLARQGLGYTSPNPLVGAVIVKD-GKIIGEGFHPKAGEPHAEVFALREAGE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G T Y+N+EP + +G + AL+ A + RVVVG+ +P + G+ + L+ G++
Sbjct: 67 KAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +CL +N HR + PF + KYAMTLD G
Sbjct: 127 VTVG--------VEEA--ACLRLNEAFCHRILNNQPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KI++S+GH+AW++ SR V +R DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 165 KISSSTGHSAWVTGTKSRQLVHQIRAGCDAVIVGGNTVRRDNPHLTIHQVTGVNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LPEEANLW+V APTIV T+ G Q L +GVEV+E L VM+ ++
Sbjct: 225 SRNLHLPEEANLWNVDIAPTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYE 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R S+LWECGG L A AI+ +I K+ AF+APKIIGG +A +PV +LG+ +MS AL L
Sbjct: 285 RQLCSVLWECGGVLGAEAITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDKMSDALPLQ 344
Query: 404 DICYEQVGPDMLISGFLQPI 423
++ + QV D+L+ G+L+ I
Sbjct: 345 NVSFRQVERDILVEGYLEAI 364
>gi|443323132|ref|ZP_21052142.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Gloeocapsa
sp. PCC 73106]
gi|442787187|gb|ELR96910.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Gloeocapsa
sp. PCC 73106]
Length = 372
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 235/383 (61%), Gaps = 24/383 (6%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
A D ++RA ++A + G T+P+P G +I K+ GEG+ G AEV A+
Sbjct: 13 LGNAFDRQMMQRALELARTALGKTAPNPMVGAVIVQGE-KIVGEGFHPGAGQPHAEVFAL 71
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+ G +GAT Y+ +EP + +G + AL+ + RV+VG+ +P + G+ + L
Sbjct: 72 KQAGPQAKGATIYVTLEPCNHYGRTPPCTEALISMEVARVIVGMVDPDPRVSGKGIEKLL 131
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+ G++V ++G + Q+ C +N +HR T PF KYAMTLD
Sbjct: 132 AAGMEV-IVGVETQA---------CQELNEGFVHRVTQHRPFGTLKYAMTLD-------- 173
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA ++G +AWI+ K SR+ V+ LR SDAV++GG+T+R+DNP LT +P
Sbjct: 174 ----GKIATTTGDSAWITGKDSREFVYQLRAASDAVIIGGSTLRQDNPHLTTHGVADRSP 229
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
+R+V+++ LNLP EANLW++ APT+V+T+ GA ++ Q +L +GVE+VE + L VM
Sbjct: 230 LRVVMSRGLNLPLEANLWNIQSAPTLVLTETGANQEMQAHLREKGVEIVELEPLEPATVM 289
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
EYF+ R + S+LWECG LAASAI++G + KV AF+APKIIGG +AP+PV +LG+VEM
Sbjct: 290 EYFYQRQFCSVLWECGQKLAASAIAAGAVQKVMAFIAPKIIGGLSAPSPVGDLGLVEMKN 349
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
ALDL + Q D LI G+L+
Sbjct: 350 ALDLQSVTLRQFTHDFLIQGYLR 372
>gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Moorea
producens 3L]
gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Moorea
producens 3L]
Length = 372
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 231/375 (61%), Gaps = 24/375 (6%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A I+R +A ++ G T+P+P GC+I + G++ GEG+ A G AEV A+ G
Sbjct: 17 AMIQRCIQLARQALGRTTPNPLVGCVIVRN-GEIVGEGFHPAAGQPHAEVFALSEAGENA 75
Query: 107 RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
+GAT Y+N+EP + +G + AL++AG+ +VVVG+ +P + G+ + LR+ G++V
Sbjct: 76 QGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGIERLRAAGIEV- 134
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V+G +EE+ +C +N IHR + P + KYAMTLD GKI
Sbjct: 135 VVG-------VEES--ACRQLNEGFIHRILYQRPLGILKYAMTLD------------GKI 173
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
AA+SGH+ WI+ + SR V LR DAV+VGGNTVR+DNP LT+ + P+R+++++
Sbjct: 174 AATSGHSKWITGEKSRSWVHQLRSACDAVIVGGNTVRQDNPNLTSHNPNAPNPLRVIMSR 233
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
TL+LP +A +W D PT+V T+ G ++L ++GVEVV + L VM Y +DR
Sbjct: 234 TLDLPRDARVWQTDDVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQ 293
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECGG LAA+AI+ G + K+ AF+APKIIGG P+PV +LG+ M+ AL L +
Sbjct: 294 LSRVLWECGGILAANAIADGAVQKILAFIAPKIIGGHGGPSPVGDLGLTLMTDALTLERV 353
Query: 406 CYEQVGPDMLISGFL 420
+ Q+G D ++ G++
Sbjct: 354 SWRQLGSDYVVEGYI 368
>gi|334116640|ref|ZP_08490732.1| riboflavin biosynthesis protein RibD [Microcoleus vaginatus FGP-2]
gi|333461460|gb|EGK90065.1| riboflavin biosynthesis protein RibD [Microcoleus vaginatus FGP-2]
Length = 391
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 232/380 (61%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A +RR ++A ++ G T+P+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 34 DRAMMRRCIELARRALGKTAPNPLVGSVI-VRDGKIVGEGFHPGAGQPHAEVFALREAGE 92
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S ALV+A + +VV G+ +P + G + LR G++
Sbjct: 93 LAEGATVYVNLEPCNHYGRTPPCSEALVKAKVAKVVAGMVDPNPLVAGTGLARLREAGIE 152
Query: 164 V--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
V V GE +C +N +HR R PF + KYAMTLD
Sbjct: 153 VVAGVEGE------------ACQKLNEAFVHRILYRRPFGILKYAMTLD----------- 189
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA S+GH+AW++ + +R V +R DAV+VGGNTVR DNP LT+ + P+R+
Sbjct: 190 -GKIATSTGHSAWVTGEEARSEVHRVRVGCDAVIVGGNTVRLDNPLLTSHQPDRNNPLRV 248
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
V+++TL+LP+ A LW+ S A T+V+T+ G R+FQ++L ++GVEVVE L +VM Y
Sbjct: 249 VMSRTLDLPKSAWLWETSVAATLVLTEPGVNREFQEFLIAKGVEVVELSPLTPTNVMAYL 308
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+DR +LS+LWECGGTLAA AI+ G + K+ AF+APKI+GG+ APTPV +LG M+ AL
Sbjct: 309 YDRSFLSVLWECGGTLAAEAIAEGAVQKIMAFIAPKIVGGQGAPTPVGDLGFSAMTDALA 368
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L + + VG D L+ G+L+
Sbjct: 369 LERVSWRAVGADCLVEGYLK 388
>gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
Length = 364
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 24/380 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A + G+TSP+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 8 DQQMMQRCLTLARRGLGYTSPNPLVGAVI-VKEGKIIGEGFHLKAGEPHAEVFALREAGE 66
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G T Y+N+EP + +G AL+ A + RVVVG+ +P + G+ + L+ G++
Sbjct: 67 KAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +CL +N HR PF + KYAMTLD G
Sbjct: 127 VTVG--------VEEA--ACLRLNEAFCHRILHNQPFGILKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KI++S+GH+AW++ SR V ++R DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 165 KISSSTGHSAWVTGTKSRQLVHEMRAGCDAVIVGGNTVRRDNPHLTIHQATGRNPLRVVM 224
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP++ANLW+V APTIV T+ G Q L +GVEV+E L VM+ +
Sbjct: 225 SRNLHLPQDANLWNVEIAPTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCE 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R SILWECGG LAA AI+ G I K+ AF+APKIIGG +A +PV LG+ +MS AL L
Sbjct: 285 RQLSSILWECGGVLAAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEKMSDALSLQ 344
Query: 404 DICYEQVGPDMLISGFLQPI 423
++ QV D+L+ G+L +
Sbjct: 345 NVSLRQVDRDILVEGYLNKV 364
>gi|354556547|ref|ZP_08975840.1| riboflavin biosynthesis protein RibD [Cyanothece sp. ATCC 51472]
gi|353551452|gb|EHC20855.1| riboflavin biosynthesis protein RibD [Cyanothece sp. ATCC 51472]
Length = 363
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 24/380 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R +A + G+TSP+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 7 DQQMMQRCLTLARRGLGYTSPNPLVGAVI-VKEGKIIGEGFHLKAGEPHAEVFALREAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G T Y+N+EP + +G AL+ A + RVVVG+ +P + G+ + L+ G++
Sbjct: 66 KAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EEA +CL +N HR PF + KYAMTLD G
Sbjct: 126 VTVG--------VEEA--ACLRLNEAFCHRILHNQPFGILKYAMTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KI++S+GH+AW++ SR V ++R DAV+VGGNTVRRDNP LT G P+R+V+
Sbjct: 164 KISSSTGHSAWVTGTKSRQLVHEMRAGCDAVIVGGNTVRRDNPHLTIHQATGRNPLRVVM 223
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP++ANLW+V APTIV T+ G Q L +GVEV+E L VM+ +
Sbjct: 224 SRNLHLPQDANLWNVEIAPTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R SILWECGG LAA AI+ G I K+ AF+APKIIGG +A +PV LG+ +MS AL L
Sbjct: 284 RQLSSILWECGGVLAAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEKMSDALSLQ 343
Query: 404 DICYEQVGPDMLISGFLQPI 423
++ QV D+L+ G+L +
Sbjct: 344 NVSLRQVDRDILVEGYLNKV 363
>gi|428316804|ref|YP_007114686.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Oscillatoria
nigro-viridis PCC 7112]
gi|428240484|gb|AFZ06270.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Oscillatoria
nigro-viridis PCC 7112]
Length = 391
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/380 (42%), Positives = 232/380 (61%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A +RR ++A ++ G T+P+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 34 DRAMMRRCIELARRALGKTAPNPLVGSVIVRD-GKIVGEGFHPGAGQPHAEVFALREAGE 92
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S ALV+A + +VV G+ +P + G + LR G++
Sbjct: 93 LAEGATVYVNLEPCNHYGRTPPCSEALVKAKVAKVVAGMVDPNPLVAGTGLARLRDAGIE 152
Query: 164 V--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
V V GE +C +N +HR R PF + KYAMTLD
Sbjct: 153 VVAGVEGE------------ACQKLNEAFVHRILYRRPFGILKYAMTLD----------- 189
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA SSGH+AW++ + +R V +R DAV+VGGNTVR DNP LT+ + P+R+
Sbjct: 190 -GKIATSSGHSAWVTGEEARSEVHRVRVGCDAVIVGGNTVRLDNPLLTSHQPDRNNPLRV 248
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
V+++TL+LP+ A LW+ S A T+V+T+ G +FQ++L ++GVEVVE L +VM Y
Sbjct: 249 VMSRTLDLPKSAWLWETSVAATLVLTEPGVNPEFQEFLIAKGVEVVELSPLTPTNVMAYL 308
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+DR +LS+LWECGGTLAA AI+ G + K+ AF+APKI+GG+ APTPV +LG M++AL
Sbjct: 309 YDRSFLSVLWECGGTLAAQAITEGAVQKIMAFIAPKIVGGQGAPTPVGDLGFSAMTEALT 368
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L + + VG D ++ G+L+
Sbjct: 369 LERVSWRAVGADCVVEGYLK 388
>gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Coleofasciculus
chthonoplastes PCC 7420]
gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Coleofasciculus
chthonoplastes PCC 7420]
Length = 380
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 226/377 (59%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R ++A ++ G TSP+P G +I G + GEG+ G AE+ A+ G
Sbjct: 26 DRTMMQRCIELARRALGRTSPNPLVGAVIVRD-GAMVGEGFHPGAGQPHAEIFALRQAGD 84
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + +G + AL+ AG+ +VVVG+ +P + G + L+ G++
Sbjct: 85 KSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKAGIE 144
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ ++C +N IHR + P+ + KYAMTLD G
Sbjct: 145 V----------VVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLD------------G 182
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SGH+AW++ + +R V LR DAV+VGGNTVR DNP LT+ H P+R+V+
Sbjct: 183 KIATASGHSAWVTGQEARRYVHQLRTACDAVIVGGNTVRLDNPHLTSHDTDTHNPLRVVM 242
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TL+LP +A LW+ +DAPT+V+T+ GA Q L ++GVEV+E L M Y +D
Sbjct: 243 SRTLDLPIDARLWETADAPTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYD 302
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R ++LWECGGTLAA AI+ G + KV AF+APKI+GG AP+PV +LG+ M+ AL L
Sbjct: 303 RQLSTVLWECGGTLAARAIADGTVQKVLAFIAPKIVGGITAPSPVGDLGLARMTDALTLE 362
Query: 404 DICYEQVGPDMLISGFL 420
+ + Q+G D ++ G++
Sbjct: 363 QVSWRQLGSDYVVEGYV 379
>gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
6301]
gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
6301]
Length = 368
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 227/377 (60%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++R ++A ++AG T+P+P GC+I ++ GEG+ A G AEV A+ G
Sbjct: 5 DRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGE-EIVGEGFHPAAGQPHAEVFALRQAGD 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V AG+ RVVVG+ +P + G + L+ G++
Sbjct: 64 RARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +E+A +C +N + R T R PF + KYAMTLD G
Sbjct: 124 VTV--------GVEQA--ACEQMNEAFVWRVTQRRPFGILKYAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+IAAS+GH+AW+SS SR +V LR + DAV+VGGNTVR DNPRLT P+R+V+
Sbjct: 162 RIAASTGHSAWVSSPESRRQVHSLRSQVDAVIVGGNTVRLDNPRLTCHDISDRHPLRVVM 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP EANLW APT+V T+ A R + L +GVEVV L +V +
Sbjct: 222 SRRLDLPLEANLWQTDIAPTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFN 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG ++LWECGGTLAA+A+ GLI K+ AF+APK+IGG +PV +LG++ M QAL +
Sbjct: 282 RGLSTLLWECGGTLAAAALREGLIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVE 341
Query: 404 DICYEQVGPDMLISGFL 420
++ +GPD+ + +L
Sbjct: 342 RSQWQAIGPDLCWTAYL 358
>gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus
elongatus PCC 7942]
gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus elongatus PCC 7942]
Length = 368
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 226/377 (59%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++R ++A ++AG T+P+P GC+I ++ GEG+ A G AEV A+ G
Sbjct: 5 DRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGE-EIVGEGFHPAAGQPHAEVFALRQAGD 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+V AG+ RVVVG+ +P + G + L+ G++
Sbjct: 64 RARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +E+A +C +N + R T R PF + KYAMTLD G
Sbjct: 124 VTV--------GVEQA--ACEQMNEAFVWRVTQRRPFGILKYAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+IAAS+GH+AW+SS SR +V LR + DAV+VGGNTVR DNPRLT P+R+V+
Sbjct: 162 RIAASTGHSAWVSSPESRRQVHSLRSQVDAVIVGGNTVRLDNPRLTCHDISDRHPLRVVM 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP EANLW APT+V T+ A R + L +GVEVV L +V +
Sbjct: 222 SRRLDLPLEANLWQTDIAPTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFN 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG ++LWECGGTLAA+A+ G I K+ AF+APK+IGG +PV +LG++ M QAL +
Sbjct: 282 RGLSTLLWECGGTLAAAALREGQIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVE 341
Query: 404 DICYEQVGPDMLISGFL 420
++ +GPD+ + +L
Sbjct: 342 RSQWQAIGPDLCWTAYL 358
>gi|428777676|ref|YP_007169463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halothece sp.
PCC 7418]
gi|428691955|gb|AFZ45249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Halothece
sp. PCC 7418]
Length = 372
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 227/375 (60%), Gaps = 26/375 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R +A + G TSP+P G ++ GK+ GEGY + G AEV A+ G
Sbjct: 15 DQAMMQRCLQLARQGIGKTSPNPLVGAVV-VQNGKIIGEGYHPSIGQPHAEVFALREAGE 73
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G S A+++AGI +V++G+ +P + G + L + G+
Sbjct: 74 NARGATLYVNLEPCNHYGRTPPCSEAVIKAGIKKVIIGMSDPNANASG-GRQKLEAAGIS 132
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E+ K+C +NA IHR + PF +FKYAMTLD G
Sbjct: 133 VLVGVEE----------KACRELNAGFIHRILYQRPFGIFKYAMTLD------------G 170
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + GH+AW++ +R+RV+ R + DAV+VGGNTVR+DNP LT P+RIV+
Sbjct: 171 KIATTVGHSAWVTDIPARNRVYQERSQCDAVIVGGNTVRQDNPYLTTHQLTKQNPLRIVM 230
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T+ L+L EA+++ +A T+V+++ ++ K L +GVEV++ L VM+Y ++
Sbjct: 231 TRRLDLSPEAHIFQTDEAATLVLSETENVQQ-AKQLEKQGVEVLQVSPLTPSAVMKYLYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG +LWECGGTLAA AI G + KV AF+APKIIGG APTPV +L +M++AL L
Sbjct: 290 RGLARVLWECGGTLAAKAIKEGAVQKVLAFIAPKIIGGVTAPTPVGDLDFKQMTEALQLE 349
Query: 404 DICYEQVGPDMLISG 418
+I +EQ+G D L++G
Sbjct: 350 EITWEQLGNDYLLTG 364
>gi|428770144|ref|YP_007161934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cyanobacterium
aponinum PCC 10605]
gi|428684423|gb|AFZ53890.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cyanobacterium aponinum PCC 10605]
Length = 361
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 215/378 (56%), Gaps = 24/378 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + R +A ++ G TSP+P G +I + G++ GEGY G AEV A++ G
Sbjct: 5 DLLMMNRCIQLAKQAEGKTSPNPLVGAVIVKN-GEIVGEGYHPQAGLPHAEVYALKQAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ AT Y+N+EP + +G AL+ AG+ RVVVG+ +P + + G+ ++ L G++
Sbjct: 64 RAKNATVYVNLEPCNHYGKTPPCTEALIGAGVKRVVVGMIDPDERVSGRGIKRLAESGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I A +CL +N IHR + +PF VFKYAMTLD G
Sbjct: 124 VK----------IGVAEDACLRLNEAFIHRVKTGLPFGVFKYAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +GH+ WI+ K++R V +LR S AV++GGNT+RRDNP LT H P+R+V+
Sbjct: 162 KIATDTGHSQWITGKSARHFVHELRSISSAVIIGGNTLRRDNPLLTTHGLTSHNPLRVVI 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T + +LP A LW A T+V T + L S+GVE+VE LN+ VME
Sbjct: 222 TASFDLPTSAQLWQQDTAKTVVFTTPQPDSSLKDSLLSQGVEIVEIANLNTTMVMENLAK 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG S+LWECGG LA AI+SG I K++ F+APKIIGGK +P+ ++ + M+ AL L
Sbjct: 282 RGCNSVLWECGGNLAKDAIASGNIQKIYCFIAPKIIGGKGLFSPIGDMKIDNMNNALALK 341
Query: 404 DICYEQVGPDMLISGFLQ 421
+ Q+ D LI G+L
Sbjct: 342 NTSIRQIDADFLIEGYLN 359
>gi|443317254|ref|ZP_21046670.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leptolyngbya
sp. PCC 6406]
gi|442783139|gb|ELR93063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leptolyngbya
sp. PCC 6406]
Length = 387
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 165/389 (42%), Positives = 228/389 (58%), Gaps = 37/389 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED +++R +A ++AG T+P+P G +I G GEGY G AEV A+ A G
Sbjct: 9 EDQRWMQRCLALAAQAAGQTAPNPLVGSVI-VRDGIAVGEGYHPQAGQPHAEVFALRAAG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+GAT Y+N+EP + H T A++ AGI RVVVG+ +P + G + LR G
Sbjct: 68 DLAQGATLYVNLEPCN-HTGRTPPCTEAILAAGIRRVVVGMVDPDPRVAGGGIVRLRRAG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
L V V IEE +C +N +HR + PF + KYAMTLD
Sbjct: 127 LTVDVG--------IEE--PACQRLNEGFVHRILHQRPFGILKYAMTLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-------- 273
GKIA +SGH+AW++S +R V LR R DAV+VGGNTVRRDNP LT+ HG
Sbjct: 166 -GKIATTSGHSAWVTSPAARREVHRLRSRCDAVIVGGNTVRRDNPHLTS-HGQCDGPFGP 223
Query: 274 --GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI 331
P+R+V+++ L+LP A+LWDV+ APT+V + + L +GVE++ +
Sbjct: 224 VSDHRNPLRVVMSRQLDLPAAAHLWDVTVAPTVVFCGPDPNPQQHETLKEQGVEILSLPV 283
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
L + VM DRG+L LWECGG LAA AI++G + KV+AF+APKIIGG AP+PV+EL
Sbjct: 284 LTPQAVMANLGDRGHLCALWECGGQLAALAIAAGCVQKVWAFIAPKIIGGATAPSPVAEL 343
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGFL 420
G +M+ AL L + + +GPD LI+G+L
Sbjct: 344 GFTQMTDALALDKLSCQPIGPDYLITGYL 372
>gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|383323239|ref|YP_005384093.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326408|ref|YP_005387262.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492292|ref|YP_005409969.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437560|ref|YP_005652285.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|451815649|ref|YP_007452101.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|2833460|sp|Q55158.1|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|339274593|dbj|BAK51080.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|359272559|dbj|BAL30078.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275729|dbj|BAL33247.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278899|dbj|BAL36416.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407961115|dbj|BAM54355.1| riboflavin biosynthesis protein [Bacillus subtilis BEST7613]
gi|451781618|gb|AGF52587.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
Length = 368
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 218/377 (57%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RR +A + G T+P+P G +I ++ G+G+ G E+ A+ G
Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGD-EIVGQGFHPQAGQPHGEIFALWEAGD 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + G A++QAGI +VVVG+ +P + G+ + LR G++
Sbjct: 63 RAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E+ ++C +N R + PF +FKYAMTLD G
Sbjct: 123 VKVGVEE----------EACQRLNEAFCFRIKHQRPFGIFKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + H++W++S ++R V LR + AV++GGNTVRRDNP LT G P+R+VL
Sbjct: 161 KIATAQAHSSWVTSSSARHWVHQLRSQCQAVIIGGNTVRRDNPLLTNHGVGEVNPLRVVL 220
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP EA LWD A T+V+T++ R +L VE + + L VME +
Sbjct: 221 SRSLDLPIEAQLWDQDVAKTLVITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQ 280
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R L +LWECGG LAA AI+ G + KV AF+APKIIGG APTPV ELG +M+QAL+L
Sbjct: 281 RNCLQVLWECGGILAAEAIAMGTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLT 340
Query: 404 DICYEQVGPDMLISGFL 420
D+ + +GPD L +G+L
Sbjct: 341 DLHCQAIGPDWLFTGYL 357
>gi|428772057|ref|YP_007163845.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cyanobacterium
stanieri PCC 7202]
gi|428686336|gb|AFZ46196.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cyanobacterium stanieri PCC 7202]
Length = 360
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 221/379 (58%), Gaps = 25/379 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D I ++A K+ G TSP+P G ++ G++ G G+ G+ AEV A++ G
Sbjct: 5 DQKMISECLELAKKAWGRTSPNPLVGAVV-VKNGQIVGRGFHPRAGSPHAEVFALKEAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G A+++AGI+RVVVG+ +P + + G ++ L S G+
Sbjct: 64 GARGATIYVNLEPCNHYGKTPPCTEAIIRAGISRVVVGMVDPDERVAGGGIKRLVSAGI- 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D++ + EEA C +N IHR + P + KYAMTLD G
Sbjct: 123 ------DVKVGVEEEA---CRKLNEAFIHRVIHKRPLGILKYAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + SRD V LR DAVVVGGNTVR+DNPRLT H P+R+V+
Sbjct: 162 KIATVTGDSKWITGQKSRDYVHFLRAGCDAVVVGGNTVRKDNPRLTTHGVSSHNPLRVVM 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVT-QRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+++ +LP + +LWD APT+V T + + +L S+GVEVVE + L+ VM+ +
Sbjct: 222 SESFDLPWDCHLWDTIMAPTVVFTLPQDVDSPLKAHLLSQGVEVVECENLSPTVVMDDLY 281
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG+ S+ WECGG L A AI+SG I KV F+APKIIGG+ PV +LG+ M AL L
Sbjct: 282 ERGFNSVFWECGGNLGARAIASGNIQKVLGFIAPKIIGGQGGFNPVGDLGITTMQDALKL 341
Query: 403 IDICYEQVGPDMLISGFLQ 421
+ ++ D LI G++Q
Sbjct: 342 HHVSVQRFDDDFLIQGYIQ 360
>gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Crocosphaera watsonii WH 8501]
gi|416405813|ref|ZP_11687974.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Crocosphaera watsonii WH 0003]
gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Crocosphaera watsonii WH 8501]
gi|357261229|gb|EHJ10525.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Crocosphaera watsonii WH 0003]
Length = 348
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 209/363 (57%), Gaps = 26/363 (7%)
Query: 62 FTSPHPN--FGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGD 119
F++P+PN G ++ G++ GEG+ G AEV A+ G G T Y+N+EP +
Sbjct: 4 FSTPNPNPMVGAVV-VKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCN 62
Query: 120 CHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
+G + AL+ A + +VVVG+ +P + G+ + L G++V I+
Sbjct: 63 HYGRTPPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEV----------IVGV 112
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
+C +N HR F + KYAMTLD GKIA S+GH+AW++
Sbjct: 113 EETACRRLNEAFCHRILHHQCFGILKYAMTLD------------GKIATSTGHSAWVTGT 160
Query: 239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV 298
TSR V R DAV+VGGNTVRRDNP LT G P+R+V+++ L+LP+EANLWDV
Sbjct: 161 TSRQLVHQTRAGCDAVIVGGNTVRRDNPHLTIHQATGRNPLRVVMSRNLHLPQEANLWDV 220
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLA 358
APT+V T+ G Q L S+GVEV+E L+ VME ++R SILWECGG L
Sbjct: 221 QVAPTLVFTEWGKNPSLQAELRSKGVEVLELSPLSPAQVMEVLYERQLSSILWECGGVLG 280
Query: 359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
A AI G+I KV AF+APKIIGG +A +PV +LG+ +MS AL L + QV D+L+ G
Sbjct: 281 AQAIREGVIQKVMAFMAPKIIGGVSAASPVGDLGLEKMSDALLLESVILRQVDQDILVEG 340
Query: 419 FLQ 421
+L
Sbjct: 341 YLN 343
>gi|428781692|ref|YP_007173478.1| riboflavin biosynthesis protein RibD [Dactylococcopsis salina PCC
8305]
gi|428695971|gb|AFZ52121.1| riboflavin biosynthesis protein RibD [Dactylococcopsis salina PCC
8305]
Length = 369
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 218/375 (58%), Gaps = 26/375 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R +A G TSP+P G ++ + GK+ GEGY G AEV A+ G
Sbjct: 15 DRAMMKRCLSLASNGMGKTSPNPLVGAVVVQN-GKIVGEGYHPGVGEPHAEVFALRQAGE 73
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
R AT Y+N+EP + +G S A++ AG+ +VV+G+ +P G R L G+
Sbjct: 74 QARDATLYVNLEPCNHYGRTPPCSEAVINAGLKKVVMGMADPNATASGGKQR-LEHAGIS 132
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ K+C +NA I R + PF +FKYAMTLD G
Sbjct: 133 V----------IVGVEEKACRELNAGFIQRIVKQRPFGIFKYAMTLD------------G 170
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AW++ +R RV+ R + DAV+VGGNTVR+DNP LT H P+RIV+
Sbjct: 171 KIATTTGHSAWVTDTPARKRVYQERSQCDAVIVGGNTVRQDNPYLTTHGVTEHNPLRIVM 230
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
T+ L L A++++ T+V+T+ + QK L +GVEV++ L +VM+Y ++
Sbjct: 231 TRNLELSPSAHIFETEQVKTLVLTET-ENLEVQKQLEKQGVEVLQLSPLTPSEVMKYLYE 289
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG +LWECGGTL A AI G + ++ AF+APKIIGG NAP+PV L + +M++AL L
Sbjct: 290 RGMARVLWECGGTLGAKAIKEGAVQQILAFIAPKIIGGVNAPSPVGNLDLKQMTEALKLE 349
Query: 404 DICYEQVGPDMLISG 418
++ +E++G D L+ G
Sbjct: 350 ELTWEKLGDDYLLKG 364
>gi|427417387|ref|ZP_18907570.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leptolyngbya
sp. PCC 7375]
gi|425760100|gb|EKV00953.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leptolyngbya
sp. PCC 7375]
Length = 367
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 29/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+ R ++A K AG T+P+P G ++ G++ GEG+ G AEV A+ A G R
Sbjct: 18 MMHRCLELAAKGAGRTAPNPMVGAIVVKD-GQIVGEGFHPQVGQPHAEVFALRAAGEAAR 76
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GAT Y+N+EP + H T A++QAGI VV+G+R+P G + LR+ G++V
Sbjct: 77 GATIYVNLEPCN-HTGRTPPCTEAVLQAGIATVVIGMRDPNPKASG-GIERLRAAGVEV- 133
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
I + +C +N IHR R PFS+ KYAMTLD GKI
Sbjct: 134 ---------ITDVETVACERLNEAFIHRMRHRQPFSILKYAMTLD------------GKI 172
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +GH+AW++S SR V LR + DAV+VGGNTVR+DNPRLT+ P+R+V+++
Sbjct: 173 ATDTGHSAWVTSPASRRHVHQLRSQCDAVIVGGNTVRKDNPRLTSHGVCDRNPLRVVMSR 232
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L LP A+LW APT+V T+ +K + VEVV + L V +RG
Sbjct: 233 SLELPTNAHLWQTDMAPTLVFTE--INQKQADSILPTSVEVVSLNPLTPEAVANNLFERG 290
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+ILWECGGTL+A A+ G+I KV+AF+APK+IGG NA TP+ ++G+ EM++AL L +I
Sbjct: 291 LSTILWECGGTLSAVALRQGVIQKVWAFIAPKLIGGSNAQTPIGDMGVREMTEALALNNI 350
Query: 406 CYEQVGPDMLISGFLQ 421
+++GPD LI G+LQ
Sbjct: 351 ELQKIGPDWLIEGYLQ 366
>gi|428306827|ref|YP_007143652.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Crinalium
epipsammum PCC 9333]
gi|428248362|gb|AFZ14142.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Crinalium
epipsammum PCC 9333]
Length = 384
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 229/381 (60%), Gaps = 24/381 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A ++R ++A ++ G T+P+P G +I G++ GEG+ G AEV A+ G
Sbjct: 26 DRAMMQRCIELARRALGRTAPNPLVGAVIVKD-GQIIGEGFHPGAGNPHAEVFALREAGD 84
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP + +G S ALV AG+ +VVVG+ +P + G + L+ G+
Sbjct: 85 LAVGATIYVNLEPCNHYGRTPPCSEALVAAGVAKVVVGMVDPDPRVSGGGIARLQQAGI- 143
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
++ ++C +N IHR + PF + KYAMTLD G
Sbjct: 144 ---------EVVVGVEEEACRQLNEAFIHRILYQRPFGILKYAMTLD------------G 182
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++GH+AWI+S +R V LR DAV+VGGNTVR DNP+LT+ H P+R+V+
Sbjct: 183 KIATTTGHSAWITSPDARHIVHQLRAACDAVIVGGNTVRLDNPKLTSHQTYTHNPLRVVM 242
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++ L+LP +A LW+ +DAPT+V+T+ + FQ+ L + VEVVE L VMEY +
Sbjct: 243 SRNLDLPTDAYLWETTDAPTLVLTEANSSPYFQQMLLKKNVEVVELTPLTPTKVMEYLYQ 302
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R LS+LWECGGTLAASAI+ + KV AF+APKI+GGK AP+PV +LG+ M+ A+ L
Sbjct: 303 RNLLSVLWECGGTLAASAIAQAAVQKVLAFIAPKIVGGKTAPSPVGDLGLAMMTDAITLE 362
Query: 404 DICYEQVGPDMLISGFLQPIP 424
+ + VG D ++ G+L P+P
Sbjct: 363 RVTWRPVGSDCMLEGYLPPLP 383
>gi|427711413|ref|YP_007060037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus sp. PCC 6312]
gi|427375542|gb|AFY59494.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus sp. PCC 6312]
Length = 376
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 144/376 (38%), Positives = 218/376 (57%), Gaps = 24/376 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ R +A ++ G TSP+P GC+I + G++ GEG+ G AEV A+ A G +
Sbjct: 11 YMARCLALAAQAKGRTSPNPLVGCVIVQA-GEIVGEGFHPQAGQPHAEVFALRAAGELAQ 69
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+N+EP + +G + A++QAGI VVVG+ +P + G+ V LR GL+V
Sbjct: 70 GATLYVNLEPCNHYGRTPPCTEAVIQAGIKTVVVGLIDPDPRVSGRGVERLRQAGLEV-- 127
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ ++E A C +N IHR PF + KYAMTLD GK+A
Sbjct: 128 -----ITGVLESA---CRDLNEAFIHRVLHHRPFGILKYAMTLD------------GKMA 167
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ SGH+ WI+S +R V LR SDAV+VGGNTVR+DNP LT+ H P+R+V+++
Sbjct: 168 SRSGHSQWITSAAARIFVHQLRAESDAVIVGGNTVRQDNPSLTSHQVSDHNPLRVVMSRQ 227
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
LNLP A+LW APT+V+T+ + L ++GVE+ L + +RG
Sbjct: 228 LNLPHPAHLWQTEMAPTLVLTEAALDHPLAQILQAQGVELQTLPSLTPTSALTALGERGI 287
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
++LWE GG L+ A+ G+I K++AF+APKIIGG+ TP +LG+ M++A+ L +
Sbjct: 288 NTVLWESGGILSTQALREGMIQKIWAFIAPKIIGGEGNMTPFGDLGLETMAEAIALERVQ 347
Query: 407 YEQVGPDMLISGFLQP 422
++ + +ML+ ++ P
Sbjct: 348 WQPIDTEMLLQAYVPP 363
>gi|443476963|ref|ZP_21066841.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudanabaena biceps PCC 7429]
gi|443017987|gb|ELS32319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudanabaena biceps PCC 7429]
Length = 371
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 225/378 (59%), Gaps = 28/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---GS 104
+++R D+A ++ G T+P+P G +I + G+V GEG+ G AEV A+ A G
Sbjct: 16 WMQRCIDLALQARGRTAPNPMVGSVIVKN-GRVLGEGFHPQAGQPHAEVFAIRAAQQTGE 74
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ AT Y+N+EP + HG S A++QAGI VV+G +P + G LR+ GL+
Sbjct: 75 DLQDATLYVNLEPCNHHGRTPPCSEAIIQAGIGEVVIGAIDPDPRVAGTGRDRLRAAGLK 134
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + ++ EA CL +N HR + +PF +FKYAMTLD G
Sbjct: 135 V-------TTGVLVEA---CLELNEAFFHRVRTNLPFGIFKYAMTLD------------G 172
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SGH+ WI+ +R V DLRG DA++ GGNTVR DNP LT H P+R+V+
Sbjct: 173 KIATTSGHSYWITGAEARRVVHDLRGGCDAIITGGNTVRLDNPHLTTHGTSLHCPLRVVV 232
Query: 284 TQTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+ + +LPE ANLW ++++ T+++ + ++ L R VEV+E DIL+ VM+
Sbjct: 233 SASCDLPETANLWHITESEKTLLIVPPDRHPQLKQKLRDRQVEVLELDILSPEVVMQELG 292
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
RG ++LWECGG L A+AI + ++ K++AF+APK+IGG AP+P+ +L + M++A+ +
Sbjct: 293 KRGCNTVLWECGGRLGAAAIKAKMVQKIYAFIAPKLIGGFTAPSPIDDLDLTLMTEAIAI 352
Query: 403 IDICYEQVGPDMLISGFL 420
+Q+G D LI+G+L
Sbjct: 353 ERSQLQQIGTDFLITGYL 370
>gi|428221126|ref|YP_007105296.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus sp. PCC 7502]
gi|427994466|gb|AFY73161.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus sp. PCC 7502]
Length = 364
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 222/384 (57%), Gaps = 31/384 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV--- 99
+ED +++ +A ++ G T+P+P G +I G++ G G+ G AEV A+
Sbjct: 2 SEDKLWMQECLKLAAQAQGMTAPNPMVGSVI-IKDGRLIGAGFHPQAGQPHAEVFAIADA 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+A +GAT Y+N+EP + G A+++AGI RVV+G+ +P + G+ L
Sbjct: 61 QAQSESTQGATLYVNLEPCNHFGRTPPCTEAIIKAGIRRVVIGMIDPDGRVSGKGCDRLI 120
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V V I EE CL +N IHR + +PF + KYAMTLD
Sbjct: 121 QAGIEVTV-------GIAEE---DCLKLNEGFIHRVKTNLPFGILKYAMTLD-------- 162
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA +GH+ WI+ +R +V LR DAV+ GGNTVR DNP LT + H+P
Sbjct: 163 ----GKIATHTGHSYWITGSPARQQVHLLRSNCDAVITGGNTVRIDNPHLTTHNLTKHSP 218
Query: 279 MRIVLTQTLNLPEEANLWDVSD-APTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSRD 336
+R+V+++TLNLP+ ANLWD++D T+V T+ G + KYL R VEV+ + L+ +
Sbjct: 219 LRVVMSRTLNLPQSANLWDMNDHEKTLVFTESGNVNSEMVKYLTDRQVEVMALEKLSPKA 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
VM RG S+LWECGG LAASAI+ G++ KV+AF+APKIIGG ++ G +M
Sbjct: 279 VMVELGKRGCNSVLWECGGNLAASAIADGVVQKVYAFIAPKIIGG--GLEAIANFGNSQM 336
Query: 397 SQALDLIDICYEQVGPDMLISGFL 420
+QAL L + +G D LI+G+L
Sbjct: 337 TQALALTNTQITTIGEDYLITGYL 360
>gi|452824232|gb|EME31236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Galdieria sulphuraria]
Length = 465
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 237/413 (57%), Gaps = 53/413 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RR ++A +AG T P+P GC++ + GKV GEGY G AEV A+ G
Sbjct: 71 DEKYLRRTIELAKTAAGNTRPNPLVGCVVLSKEGKVVGEGYHPKAGLPHAEVFALGEAGE 130
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+N+EP + H T A++++GI+RVVVG+ +P G +R LRS G+
Sbjct: 131 HARGGTLYVNLEPCN-HTGRTPPCTEAILRSGISRVVVGMVDPDPRTSGDGIRRLRSHGI 189
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV + G IEE ++C +NA R R P S+FKYAM++D
Sbjct: 190 QV-IDG-------IEE--RACRELNAGFCLRMKWRKPLSIFKYAMSID------------ 227
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT----- 277
G+IA S+G + WIS++ SR V LR + DA+++GGNTVR+D+P+LT R G
Sbjct: 228 GRIATSNGSSRWISNEKSRQAVHMLRSQVDAIIIGGNTVRKDDPQLTIRLPGDQQDITSN 287
Query: 278 -------------------PMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGAR-RKFQ 316
P+R+V++ +++LP A ++ D + PT+V+T++ ++ + +
Sbjct: 288 HSHLTNTVLGKSCLGNRLHPLRVVVSSSMDLPIHARIFEDQEEYPTMVITRKFSKMEERK 347
Query: 317 KYLASRGVEVVEFDI--LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFV 374
K L S+GV ++E D L+ V++ ++ G L +LWECGGTLA+ A+ IHK+ F+
Sbjct: 348 KVLRSKGVSIIELDTPTLSPSQVLDCLYEWGALQVLWECGGTLASKALEQDCIHKIVTFI 407
Query: 375 APKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLM 427
APKI+GG ++P+P + + EMSQA+ L + +++V D ++ G+ + +++
Sbjct: 408 APKIVGGVSSPSPFASFEIQEMSQAIVLHSLNFQKVDGDFMVEGYFPAVNNVI 460
>gi|428216403|ref|YP_007100868.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudanabaena sp. PCC 7367]
gi|427988185|gb|AFY68440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudanabaena sp. PCC 7367]
Length = 378
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/393 (38%), Positives = 221/393 (56%), Gaps = 39/393 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---- 99
+D +++ ++A K+ G T+P+P G +I G G G+ G AE A+
Sbjct: 5 QDLDWMQYCLELAAKAKGQTAPNPLVGSVI-VKQGNRLGAGFHPKAGQPHAEALAIAEAR 63
Query: 100 -EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ G + GAT Y+N+EP + HG A+++AGI RVVVG+ +P + G L
Sbjct: 64 AKYGKAAIEGATLYVNLEPCNHHGRTPPCTEAIIKAGIKRVVVGMIDPDLRVSGTGCDRL 123
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R G++V I A +C +N +HR + P +FKYAMTLD
Sbjct: 124 RQAGIEV----------ITGIAEAACQRLNEGFVHRVRHQTPLGIFKYAMTLD------- 166
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA ++GH+ WI+ + +R V LR DAV+ GGNTVR DNP LT + H
Sbjct: 167 -----GKIATAAGHSFWITGEAARREVHLLRASCDAVITGGNTVRLDNPLLTTHNLTTHN 221
Query: 278 PMRIVLTQTLNLPEEANLWDVSDA----------PTIVVTQRGARRKFQKYLASRGVEVV 327
P+R+VL+++L+LP +A LW V ++ PT+V+TQ A + Q YL RGVE++
Sbjct: 222 PLRVVLSRSLDLPRDAKLWQVGNSDRGDNKGQNHPTLVITQPHANPELQSYLCDRGVEIL 281
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
L + V++ RG +LWECGG LAA AI++G + KV+AF+APK+IG AP+P
Sbjct: 282 TLPELTIQAVIQELGSRGMNQVLWECGGNLAAEAIAAGAVQKVYAFIAPKLIGDFAAPSP 341
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+++LG+ +MSQALDL Q+ D LI+G+L
Sbjct: 342 IADLGLRQMSQALDLRQTELRQIDRDWLITGYL 374
>gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
Length = 366
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 212/379 (55%), Gaps = 25/379 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ R +A+++ G T+P+P G ++ + G GEG+ G AE A+ A G
Sbjct: 6 DEDWMERCLALAEQAWGRTTPNPLVGAVV-VNDGLAVGEGFHPKAGAPHAEAFALRAAGD 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + HG + A+V AG+ RVV+G+ +P + G+ + LR+ G++
Sbjct: 65 LARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ + C +N H + PF V KYAMTLD G
Sbjct: 125 VSV-------GVLSD---RCERLNEAFSHFMRTGRPFGVLKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
K A +GH+ WIS + +R R LR +DAV+VGGNTVR D+P+LT R G P+R+VL
Sbjct: 163 KTATRTGHSFWISGQAARARTHRLRAFADAVIVGGNTVRLDDPQLTVRLAEGRNPLRVVL 222
Query: 284 TQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
++TL LP EA LW D + +PT+V T + + +L GVEV D L V+E
Sbjct: 223 SRTLALPAEARLWLDQTPSPTLVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLA 282
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+S+LWECGGTLA SA++ G + KV FVAP ++GG A TPV+ G +M A+ L
Sbjct: 283 SYPCVSVLWECGGTLAWSALTDGSVQKVICFVAPCLVGGAQAYTPVAGEGFAKMHAAMRL 342
Query: 403 IDICYEQVGPDMLISGFLQ 421
+ E VG D + SG+LQ
Sbjct: 343 ERVHAEPVGEDWMWSGYLQ 361
>gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
Length = 371
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 215/383 (56%), Gaps = 30/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ R +A + SP+P C+I +V GEG G AEV A++ GS
Sbjct: 6 DRQWMERCLSLARSTPQRPSPNPRVACVIVRGD-QVVGEGVHLGAGQPHAEVLALQQAGS 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + +G + A++ AGI RVVVG+++P + G+ +R L+ G++
Sbjct: 65 LAKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGVE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E+ C +N + F + KYAMTLD G
Sbjct: 125 VTV-------GVLEQ---ECQELNEGFAFAIVQKRCFGLLKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----HGGGHTPM 279
K AA++GH+ WIS+ +R+ V R DAV+VG TV DNP LT R HG P+
Sbjct: 163 KSAAATGHSRWISNPLAREWVHRQRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGS--QPL 220
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
R+VL+++LNLP A+LW +APT+V+T+ LA +GVE++ D + +
Sbjct: 221 RVVLSRSLNLPPLAHLWRAEEAPTLVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQ 280
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+RG LS LWECGGTLA +A+ G I KV AF+APKI+GG +APTPV+ G+ +++Q+
Sbjct: 281 VLFERGCLSALWECGGTLAWAALKDGAIQKVAAFIAPKILGGADAPTPVAGEGIPDVNQS 340
Query: 400 LDLIDICYEQVGPDMLISGFLQP 422
L++ + VG + LI+G + P
Sbjct: 341 WQLLEPQLQTVGDNWLITGKILP 363
>gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 370
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 210/377 (55%), Gaps = 26/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ R +A + SP+P C+I +V GEG G AEV A++ GS
Sbjct: 4 DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGD-RVVGEGVHPGAGQPHAEVLALQQAGS 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+N+EP + +G + A++ AGI RVVVG+++P + G+ +R L+ G+
Sbjct: 63 LARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E + C +N + F + KYAMTLD G
Sbjct: 123 VTV-------GVLE---RECQELNEGFAFAIVRQQCFGLLKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG--GGHTPMRI 281
K AA++GH+ WIS+ +R V R DAV+VG TV +DNPRLT R G P+R+
Sbjct: 161 KSAAATGHSRWISNSPARQWVHQQRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRV 220
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
VL+++LNLP A+LW V +APT+V+T+ A LA +GVE++ + +
Sbjct: 221 VLSRSLNLPPVAHLWQVEEAPTLVITEAVATHPLWGSLAKQGVELLHLPQVTPSRAAQVL 280
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
RG LS LWECGGTLA +A+ G I KV AF+APKI+GG APTPV+ G+ +++Q+
Sbjct: 281 FQRGCLSALWECGGTLAWAALKDGAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVNQSWQ 340
Query: 402 LIDICYEQVGPDMLISG 418
L++ E +G + LI G
Sbjct: 341 LVEPRLETLGDNWLIIG 357
>gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
Length = 371
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 202/370 (54%), Gaps = 27/370 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A+ G TSP+P GC++ + G++ GEGY G AEV A+ G RG
Sbjct: 1 MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP HG S AL+ AGI RVVV + +P + G + LRS G++V
Sbjct: 61 GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEV--- 117
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
++ EEAR +N +HR R PF + K+AM +D G+ A
Sbjct: 118 ---IEGVAAEEARA----LNRAFLHRIAHRRPFGILKWAMGVD------------GRTAL 158
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G + WIS +R+ V LR R DAVVVGG TVR D+P LT+R P+R+VL+++L
Sbjct: 159 PNGASQWISGPEARNWVHALRARCDAVVVGGGTVRADDPLLTSRGRRHSEPLRVVLSRSL 218
Query: 288 NLPEEANLWDVSDAPTIVVT--QRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
LPE A LWD + APT+V + ARR+FQ L RG+E + + +M+ RG
Sbjct: 219 ALPERARLWDTAQAPTLVAHGYEAPARRRFQ--LDQRGIERLVLEACEPWALMQELARRG 276
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LA +A+ + +V A +APK++GG A TPV +LG M Q
Sbjct: 277 CNQVLWECGAELATAALRQSCVQEVAAVIAPKVMGGTLARTPVGDLGFTGMQQVPAWQTT 336
Query: 406 CYEQVGPDML 415
C +Q+G D+L
Sbjct: 337 CPQQLGDDLL 346
>gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
MIT 9202]
gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
MIT 9202]
Length = 364
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 25/373 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A TSP+P G +I GK+ EG+ + G AE A +
Sbjct: 11 WMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQDVK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T Y+N+EP CH T V ++ +G+ +V + I +P + + G+ ++ L+ G+QVH
Sbjct: 71 GGTMYVNLEPC-CHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQVH 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
LG +K L +N IHR T++ F V K+AM++D G+I
Sbjct: 130 -LGL---------CKKESLELNKAFIHRNTTKKAFGVLKWAMSID------------GRI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WI++K SR V LR DA+++GGNT+RRDNP LT R P+R+V T+
Sbjct: 168 ALKNGKSKWITNKESRSLVHSLRSEFDAIIIGGNTLRRDNPLLTTRGSKNPEPLRVVFTK 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP ++NLWD +A T+V+ + + VEV + N + + RG
Sbjct: 228 SLDLPSKSNLWDCGEAKTLVIYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRG 287
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LA +AI S I ++ F+APKI+GG+N P + EM + + L D
Sbjct: 288 CNKVLWECGSRLATAAIKSNCIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKLSDS 347
Query: 406 CYEQVGPDMLISG 418
+G D+ + G
Sbjct: 348 KISLIGNDICVKG 360
>gi|123968996|ref|YP_001009854.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. AS9601]
gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. AS9601]
Length = 364
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 25/376 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A TSP+P G +I GK+ EG+ Y G AE A +
Sbjct: 11 WMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKKDPK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G + Y+N+EP CH T V ++ +GI + + I +P + G+ ++ L G+QVH
Sbjct: 71 GGSIYVNLEPC-CHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQVH 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
LG +K L +N IHR + F VFK+AM++D G+I
Sbjct: 130 -LGL---------CKKESLDLNNAFIHRNITNKAFGVFKWAMSID------------GRI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WI+++ SR V R DA+++GGNT+RRDNP LT R P+R+V T+
Sbjct: 168 ALKNGKSKWITNEESRALVHSFRSEFDAIIIGGNTLRRDNPLLTTRGLKNPEPLRVVFTK 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP ++NLWD + A T+V+ + + VE+ + N + + RG
Sbjct: 228 SLDLPTKSNLWDCNKAKTLVIYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRG 287
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LA +AI S I ++ F+APKI+GG+N+ P+ + EM + + L +
Sbjct: 288 CNKVLWECGPRLATAAIKSNCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSES 347
Query: 406 CYEQVGPDMLISGFLQ 421
+ +G D+ + G L+
Sbjct: 348 QHSLIGDDICVKGSLK 363
>gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9215]
gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9215]
Length = 364
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 193/376 (51%), Gaps = 25/376 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A TSP+P G +I GK+ EG+ + G AE A R
Sbjct: 11 WMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKKDAR 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G Y+N+EP CH T V ++ +GI R + I +P + G+ ++ L G+QVH
Sbjct: 71 GGAIYVNLEPC-CHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQVH 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
LG +K L +N I+R T++ F VFK+AM++D G+I
Sbjct: 130 -LGL---------CKKESLDLNKAFIYRNTTKKAFGVFKWAMSID------------GRI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WI+++ SR V R DA+++GGNT+RRDNP LT R P+R+V T+
Sbjct: 168 ALKNGKSKWITNEESRALVHSFRAEFDAIIIGGNTLRRDNPLLTTRGLKNPEPLRVVFTK 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP ++NLWD + A T+V+ + + VEV + N + + RG
Sbjct: 228 SLDLPTKSNLWDCNKAKTLVIYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRG 287
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
++LWECG LA +AI + I ++ F+APKI+GG+N+ P+ + EM + + L
Sbjct: 288 CNNVLWECGPRLATAAIKTNCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKS 347
Query: 406 CYEQVGPDMLISGFLQ 421
+G D+ + +
Sbjct: 348 QLSLIGDDICVKSLFK 363
>gi|126696788|ref|YP_001091674.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9301]
gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9301]
Length = 364
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 29/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A TSP+P G +I G + EG+ + G AE A + +
Sbjct: 11 WMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAMAFNNLKNDAK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T Y+N+EP CH T V ++ +G+ +V + + +P + + G+ ++ L+ G+QV+
Sbjct: 71 GGTMYVNLEPC-CHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKLLKEAGIQVN 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
LG +K L +N IHR T++ F V K+AM++D G+I
Sbjct: 130 -LGL---------CKKESLDLNKAFIHRNTTKKAFGVLKWAMSID------------GRI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WI++ SR V R DA+++GGNT+RRDNP LT R P+R+V T+
Sbjct: 168 ALKNGKSKWITNDESRSLVHSFRAEFDAIIIGGNTLRRDNPFLTTRGSKNPEPLRVVFTK 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLAS--RGVEVVEFDILNSRDVMEYFHD 343
+L+LP ++NLWD S A T+V+ + YL+ + VEV + N + +
Sbjct: 228 SLDLPSKSNLWDCSKAKTLVIYDSSTAN--ESYLSRIPKCVEVEKVLSDNPELISKILAK 285
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG +LWECG LA +AI S I ++ F+APKI+GG+N+ P + EM + + L
Sbjct: 286 RGCNKVLWECGPNLATAAIQSNCIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLS 345
Query: 404 DICYEQVGPDMLISGFLQ 421
+ +G D+ + +
Sbjct: 346 NSQVSLIGNDICVKSLCK 363
>gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
Length = 354
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 196/368 (53%), Gaps = 23/368 (6%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ RA +A + G TSP+P G L+ + G + GEG+ A G AEV A+ G RG
Sbjct: 1 MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T + +EP HG S A++ AGI RV+V + +P + GQ + ALR G +V V
Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLV- 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
EAR +NA HR S P + K+AM++D G+ A
Sbjct: 120 -----GVRQSEARN----LNAAFCHRLRSGRPLGILKWAMSVD------------GRTAL 158
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G + WIS SR+ V LR R DAV+VGG T+R D+P LT+R P+R+V+++ L
Sbjct: 159 PNGASQWISGPASREWVHRLRARCDAVIVGGGTLRTDDPLLTSRGRRAIEPLRVVISREL 218
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
LPE+A LWD S APT+V A + L + GVE +E ++ME RG
Sbjct: 219 GLPEQAQLWDQSTAPTLVAHGPEAPEPDRLQLDALGVERLELAGCEPLELMEALAQRGCN 278
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
+LWECG +LAA+A+ G + +V A +APK++GG A TP+ +L + M+ AL +
Sbjct: 279 QVLWECGPSLAAAALRQGCVQRVAAVMAPKLLGGTAARTPLGDLQLNSMAMALPWREQGL 338
Query: 408 EQVGPDML 415
+ G D++
Sbjct: 339 SRSGDDLI 346
>gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 200/372 (53%), Gaps = 26/372 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA ++A + G TSP+P G +I ++ GEG+ G AE+ A+E GS +
Sbjct: 13 WMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSLAK 72
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T +N+EP CH T A++++GI RVVV I++P Q + G+ + L+ G++V
Sbjct: 73 GGTLLVNLEPC-CHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEV- 130
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V G I+E K +N I R + P+ K+AM+ D G+I
Sbjct: 131 VTG------ILE---KEAAFLNRAFIFRNRTGRPWGTLKWAMSFD------------GRI 169
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
S+G + WIS + SR RV LR ++DAV+VGG TVR DNP LT R P+R+V +
Sbjct: 170 GLSNGKSKWISGEKSRKRVHSLRAKNDAVIVGGGTVRSDNPLLTTRGIADIEPLRVVCSS 229
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
TL+LP+EA LW+ A T++ + + + L S G E + + VME RG
Sbjct: 230 TLDLPKEAQLWNTELAKTLIFYGPESDARCLENLPS-GPERLCLEENTPIKVMEALAQRG 288
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG +LA AI + ++ F++PK++GG +A TP+++ G M Q L ++
Sbjct: 289 CNQVLWECGSSLATKAIQQNCVQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEV 348
Query: 406 CYEQVGPDMLIS 417
+ G D +++
Sbjct: 349 SSNKSGEDFVLN 360
>gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophobotulus glycolicus DSM 8271]
Length = 398
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 32/385 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++RA D+A+ + G TSP+P GCLI G + GEGY GT AEV A+ A G
Sbjct: 38 QDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKD-GLIIGEGYHQKAGTPHAEVHALTAAG 96
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP G AL+QAG+ RV V + +P +RG+ ++ +R+ G+
Sbjct: 97 KRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAAGI 156
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V L E+ +K+ N P + + +PF ++K A T D
Sbjct: 157 EVFTGLLENEAAKL-----------NEPFVKAMKTNLPFVLYKSASTAD----------- 194
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK A+ +G + WI++ SR V +LR D ++VG T+ +DNP+LT R GG P+R+
Sbjct: 195 -GKTASCTGDSRWITNDLSRKYVHELRNSYDVIMVGSKTILQDNPQLTCRIAGGRHPVRL 253
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASR-GVEV---VEFDILNSRD 336
++ TL++PEEA L +S+ TI+ T R A +K K R +EV E + +
Sbjct: 254 IVDGTLSIPEEARLLSLSEGSTIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKT 313
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M+ ++GY S+L E GGTLA I+ L+ KV F+APKII G+++ +P+S + M
Sbjct: 314 LMQDILEKGYQSVLLEGGGTLAGQMIAEKLVDKVNLFIAPKII-GQSSFSPISGFCINSM 372
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
+ A+ + ++ ++ D+L+SG+L+
Sbjct: 373 ADAVMIREMEMKEFAGDILLSGYLK 397
>gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9312]
gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9312]
Length = 364
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 198/378 (52%), Gaps = 29/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A G TSP+P G +I G + EG+ Y G AEV A +
Sbjct: 11 WMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKKEVK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
Y+N+EP CH T V ++ +GI ++ + I++P + + G+ ++ L+ G++VH
Sbjct: 71 DGYMYVNLEPC-CHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIKVH 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
LG +K L +N I+R + F V K+AM++D G+I
Sbjct: 130 -LGL---------CKKESLELNKAFIYRTITEKSFGVLKWAMSID------------GRI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
+G + WI++K SR V R DA+++GGNT+R+DNP LT R P+R+V T+
Sbjct: 168 GLKNGKSKWITNKDSRSLVHSFRTEFDAIIIGGNTLRQDNPLLTTRGLKNPEPLRVVFTK 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLAS--RGVEVVEFDILNSRDVMEYFHD 343
TL+LP ++NLWD +A T+V+ +K+L + + VEV + N + +
Sbjct: 228 TLDLPPKSNLWDCDEAKTLVIYDSSTAN--EKFLTNIPQCVEVEKVSSDNPELISKLLAK 285
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
RG +LWECG LA SA+ S I+++ +F+APKI+GG+ P+ + EM + + L
Sbjct: 286 RGCNKVLWECGPKLATSAVKSDCINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKLS 345
Query: 404 DICYEQVGPDMLISGFLQ 421
D +G D+ + L+
Sbjct: 346 DSQVSLIGNDICVKSELK 363
>gi|427702547|ref|YP_007045769.1| riboflavin biosynthesis protein RibD [Cyanobium gracile PCC 6307]
gi|427345715|gb|AFY28428.1| riboflavin biosynthesis protein RibD [Cyanobium gracile PCC 6307]
Length = 377
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 190/351 (54%), Gaps = 25/351 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA +A + G TSP+P G ++ + G + GEG+ G AEV A+ G R
Sbjct: 20 WMDRALQLAALAEGRTSPNPLVGAVVLDADGTLVGEGFHARAGEAHAEVGALAQAGERAR 79
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++ AGI RVV+ + +P + G LR+ GL+V
Sbjct: 80 GGTLVVTLEP-CCHHGRTPPCCEAVIAAGIARVVLAMADPNPLVAGGGSARLRAAGLEV- 137
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ EAR+ +N P +HR + P + K+AM+LD G+
Sbjct: 138 -----IAGVREAEARR----LNRPFLHRIATGRPLGILKWAMSLD------------GRT 176
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS +R V LR R DAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 177 ALPNGVSQWISGPEARAWVHRLRARCDAVIVGGGTVRADDPLLTSRGQRSPEPLRVVLSR 236
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LPE+A LWD S APT+V GA ++ ++ LA G E +E ++E RG
Sbjct: 237 SLDLPEKARLWDTSGAPTLVAHGPGAPQEARRRLAGSGAESLELRACEPARLLEALEARG 296
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+LWECG LAA+A+ G I +V A +AP+++GG A TP+ +LG +
Sbjct: 297 CNRVLWECGPELAAAALRQGCIQQVAAVIAPRLLGGHPARTPLGDLGHTSL 347
>gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Moorella thermoacetica ATCC 39073]
gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella
thermoacetica ATCC 39073]
Length = 376
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 208/386 (53%), Gaps = 33/386 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+DA ++ RA ++A + G TSP+P G +I G+V GEGY GT AE+ A+ A G
Sbjct: 4 QDAIFMARALELARQGLGRTSPNPTVGAVI-VRDGQVVGEGYHQKAGTPHAEIHALRAAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGAT Y+ +EP CH T A++ AGI RVV + +P + G RAL G
Sbjct: 63 EKARGATLYVTLEPC-CHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQAG 121
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + +EAR+ +N I T+ P+ K A+TLD
Sbjct: 122 IEVET------GLLADEARR----LNEAFIKYITTGRPWVTLKMALTLD----------- 160
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +G A WI+ +R R +LR DA++VG TV D+P LT R G G +
Sbjct: 161 -GKIATRTGAARWITGPAARQRAHELRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAI 219
Query: 280 RIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR--- 335
R++L L LP A + ++ S+APT+VVT A ++ LA+RGVEV+ + R
Sbjct: 220 RVILDSHLRLPLSARVVNLQSEAPTLVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAW 279
Query: 336 -DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++ R SIL E G + A+A+++G++ KV AF+APKI GG+ AP PV LG+
Sbjct: 280 QPLLAELARRQVTSILVEGGAEVNATALAAGIVDKVVAFIAPKIFGGREAPAPVGGLGVA 339
Query: 395 EMSQALDLIDICYEQVGPDMLISGFL 420
+ + A L + E+ G D+++SG+L
Sbjct: 340 DPATAWKLEKLAVERCGEDIMLSGYL 365
>gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CB0101]
Length = 359
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 23/370 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A G TSP+P GC++ G++ GEG+ GT AEV A+ G R
Sbjct: 8 WMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALRQAGERAR 67
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G TA + +EP HG S AL+ AG+ RVVV +R+P + G+ + LR G+ V
Sbjct: 68 GGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRDAGVDV-- 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L+ EAR ++N +HR P + K+AM+LD G+ A
Sbjct: 126 ----LEGVCEAEAR----ILNRGFLHRVEQGRPLGLLKWAMSLD------------GRTA 165
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WIS +R V LR + DAV+VGG TVR DNP LT+R P+R+V++++
Sbjct: 166 LPNGSSQWISGPPARAWVHHLRAQCDAVIVGGGTVRADNPLLTSRGQRTPEPLRVVISRS 225
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
L+LP++A LW+ S+A T+VV A + L GVE + + +++E RG
Sbjct: 226 LDLPKQAQLWNQSEAATLVVHSSSAPAEQLDRLDGLGVERLVLERCEPLELLEALGQRGC 285
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+LWECG LAA+A+ G + +V A +APK++GG A TP+ +LG+V+++QA+
Sbjct: 286 NQVLWECGPELAAAALRQGCVQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSR 345
Query: 407 YEQVGPDMLI 416
+Q+G D L+
Sbjct: 346 LQQLGNDCLL 355
>gi|335428671|ref|ZP_08555581.1| riboflavin biosynthesis protein RibD [Haloplasma contractile
SSD-17B]
gi|335430947|ref|ZP_08557833.1| riboflavin biosynthesis protein RibD [Haloplasma contractile
SSD-17B]
gi|334887487|gb|EGM25819.1| riboflavin biosynthesis protein RibD [Haloplasma contractile
SSD-17B]
gi|334891612|gb|EGM29858.1| riboflavin biosynthesis protein RibD [Haloplasma contractile
SSD-17B]
Length = 369
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 200/386 (51%), Gaps = 33/386 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA +++ K G+TSP+P G +I G + GEGY G+ AEV A +
Sbjct: 2 DQKFMKRAIELSKKGIGYTSPNPLVGAVIVKD-GTIIGEGYHEVYGSHHAEVNAFKNATE 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G + L V+ I VV+ +++P + G+ ++ L G++
Sbjct: 61 DVTGATMYVTLEPCSHYGKTPPCADLIVKKKIKEVVIALKDPNPLVSGRGIKILEDNGIK 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + I+E C VN +H T PF + K AMTLD G
Sbjct: 121 V-------TTGILES---ECRKVNEIFLHYITKGTPFCILKTAMTLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA +GH+ WI+ +SR V LR + A++VG +TV DNP LT R G P+R+
Sbjct: 159 KIATKTGHSKWITGDSSRKHVHKLRHQVSAIMVGIDTVIEDNPLLTTRLEKQDGRDPIRV 218
Query: 282 VLTQTLNLPEEANLW--DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR---- 335
++ T +P +AN+ D S A I T+R + K + L RG +V+ + N+R
Sbjct: 219 IVDTTARIPLDANVLSNDSSAATIIATTERAPKDKIE-LLKDRGADVIVTRLKNNRVDLQ 277
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
D++ +R S+L E G TL S + GLIHKV ++APK+IGG A TPV G+
Sbjct: 278 DLLNQLGERKIDSVLIEGGSTLNYSLLQEGLIHKVMTYIAPKLIGGSTAKTPVGGQGVST 337
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
M +AL L DI D++I G+++
Sbjct: 338 MDEALHLQDIQVSHFDEDIMIEGYIK 363
>gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
Length = 365
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 198/379 (52%), Gaps = 31/379 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ + G + GEG+ G AEV A+ G +
Sbjct: 11 WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++QAGI RVVV +++P + G ++ LR GL+V
Sbjct: 71 GGTIIVTLEP-CCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEV- 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ + EA N IHR + P+ + K+AM+LD G+
Sbjct: 129 -----ITGVLEAEAAHQ----NRAFIHRVQTGRPWGLLKWAMSLD------------GRT 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS+ +R V LR DAV+VGG TVR DNP LT+R P+R+VL++
Sbjct: 168 ALPNGESQWISAPPARGWVHQLRAGCDAVIVGGGTVRADNPLLTSRGVRAPEPLRVVLSR 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+L+LP +A LWD + A T++ G A R + G E +E D++ R
Sbjct: 228 SLDLPPQAQLWDTTLASTLLAHGPGCADRPLPE-----GPERLELLASEPLDLLHALAPR 282
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G +LWECG +LAA A+ G + ++ +APK++GG A TP+ ELG M Q + L
Sbjct: 283 GCNRVLWECGPSLAAQAVKQGCVQELAVVIAPKLLGGTLARTPLGELGFSAMDQVIPLSA 342
Query: 405 ICYEQVGPDMLISGFLQPI 423
+ E +G D+L+ P+
Sbjct: 343 LTAEWLGCDLLLGALTPPL 361
>gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD
(diaminohydroxyphosphoribosylaminopyrimidine deaminase /
[Synechococcus sp. CB0205]
Length = 371
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 202/370 (54%), Gaps = 23/370 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A AG TSP+P GC++ G + GEG+ GT AEV A+ G +
Sbjct: 20 WMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHALSQAGERAQ 79
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G TA +++EP HG S AL+ AG+ RVVV +R+P + G + L++ G++V
Sbjct: 80 GGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQLQAAGIEVI- 138
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
S + E ++ +N I R + P+ + K+AM+LD G+ A
Sbjct: 139 ------SGVCEAEAQA---LNRSFIQRVQTGRPWGILKWAMSLD------------GRTA 177
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WIS +R V LR + DAV+VGG TVR DNP LT+R P+R+VL+++
Sbjct: 178 LPNGASQWISGPPARAWVHQLRAQCDAVLVGGGTVRADNPLLTSRGQRSPEPLRVVLSRS 237
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
L+LP++ LWD S A T+V+ A + Q+ L GVE + R +E RG
Sbjct: 238 LDLPQDTQLWDQSLAQTLVLHGSKAPAERQQQLDRLGVEHLALPECQPRAALELLAQRGC 297
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+LWECG LAA+A+ G + ++ +APK++GG A TP+ ELG+V+++QA
Sbjct: 298 NQVLWECGAELAAAALREGCVQQLAGVIAPKLLGGLAARTPLGELGLVDVNQAETWPQQR 357
Query: 407 YEQVGPDMLI 416
++G D L+
Sbjct: 358 LRRLGNDWLL 367
>gi|123966659|ref|YP_001011740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9515]
gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9515]
Length = 368
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 27/375 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA +A G T+P+P G +I G + EG+ G AE A
Sbjct: 8 DIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLKK 67
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
R Y+N+EP CH T V ++ GI +V V I +P + + G+ ++ L+ G+
Sbjct: 68 NARDGILYVNLEPC-CHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLKDSGI 126
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+VH + K +N IHR + + V K+AM++D
Sbjct: 127 EVH----------LGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMD------------ 164
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
G++ +G + WI++K SR V R DA+V+GGNT+R+D+P LT+R P+R+V
Sbjct: 165 GRVGLKNGKSKWITNKDSRSLVHSHRACFDAIVIGGNTLRKDDPLLTSRGRRNPEPLRVV 224
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
T+TL+LPE++N WD + A T+VV A + F K + GVE+ E N +
Sbjct: 225 FTKTLDLPEKSNFWDFNLAKTLVVYDSSCADKNFLKRIP-EGVEIEELSSDNPILLSNLL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+G ++LWECG LA SAI +G I ++ F+APKI+GG ++ P S+ +M Q +
Sbjct: 284 AKKGCNNVLWECGPKLATSAIKAGCIQELMTFIAPKILGGISSMNPFSDFEFTDMDQVFN 343
Query: 402 LIDICYEQVGPDMLI 416
L +G D+ +
Sbjct: 344 LCKSEINFIGDDIFV 358
>gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
Length = 364
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 208/386 (53%), Gaps = 33/386 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA--G 102
+ +Y+RRA ++A AG SP+P G +I + G++ GEGY G AEV A+ +
Sbjct: 2 NESYMRRALELAKLGAGRVSPNPMVGAVIVKN-GEIIGEGYHKQYGGPHAEVNAIASVSD 60
Query: 103 GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G+T Y+ +EP CH T A++ I VV+G +P + G+ V LR++
Sbjct: 61 NGELEGSTIYVTLEPC-CHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAE 119
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++EE CL +N + ++ PF + K AMTLD
Sbjct: 120 GIEVIV-------GVLEE---ECLKINESFMKYIKTKTPFVIMKAAMTLD---------- 159
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA S+G + WI+++ SR V LR + ++VG NTV +D+P LT R GG +P R
Sbjct: 160 --GKIATSTGDSKWITNEESRINVHKLRNKVSGIMVGINTVLKDDPELTCRLEGGASPKR 217
Query: 281 IVLTQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
I++ L +P A + + D IV T R A + L +GV+V+ + +N +
Sbjct: 218 IIVDSGLKIPLNAKVLNAKDKVEVIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLK 277
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ME + S+L E GGTL SA+ G+I KV ++APKIIGG+N+ TPV +G+ +
Sbjct: 278 KLMEELGNLKVDSVLLEGGGTLCFSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINK 337
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+ A+++ D+ G D+LI G+++
Sbjct: 338 IKDAINVKDLRVSTFGGDILIEGYIR 363
>gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
Length = 370
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 206/385 (53%), Gaps = 36/385 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED ++RRA ++A K+ G TSP+P G ++ G+V EGY G AE++A+ A G
Sbjct: 6 EDEFFMRRALELALKARGRTSPNPMVGAVL-VKEGRVIAEGYHRRAGMPHAEIEALRAAG 64
Query: 104 SFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGAT Y+N+EP CH T A++ AGI RVVV + +P + G+ ++ LR G
Sbjct: 65 EEARGATLYVNLEPC-CHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILREAG 123
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
L+V V + +EAR+ +N + T+R PF V K AMTLD
Sbjct: 124 LEVTV------GVLEQEARR----LNEVFVKFITTREPFVVLKVAMTLD----------- 162
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA S+G A WI+ +R V +LR DA++VG TV +D+P LTAR G P+R+
Sbjct: 163 -GKIATSTGEARWITGPEARAYVHELRDTYDAILVGKGTVLKDDPSLTARLPGARDPVRV 221
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVV------EFDILNS 334
+L+ +LP A + ++ S APT V A K L +G EV+ + D+
Sbjct: 222 ILSSLADLPLSARVLNLNSSAPTWVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDL--- 278
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ +++ R +L E GGT+ AS +++ L+ KV VAPKI GG AP PV G+
Sbjct: 279 KLLLKELGRREITGVLVEGGGTVNASFLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVE 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
+AL L D+ +++G D G+
Sbjct: 339 HPDRALRLKDLTVKKLGADFCFEGY 363
>gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
H10]
gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
H10]
Length = 367
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 210/381 (55%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++R +IA + G T+P+P G +IA + GK+ EG+ A G AEV A +
Sbjct: 7 YMKRTLEIAKEGWGRTNPNPLVGAVIAKN-GKIISEGFHEALGCAHAEVCAFSNAPTDIS 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+N+EP +G V A++ +GI VVV + +P + G+ ++ L+ + V V
Sbjct: 66 GATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANINVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEA+K +N IH T R+PF + K AMTLD GKIA
Sbjct: 126 ------GVLEEEAKK----LNEIFIHYITKRLPFVIMKTAMTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+ +G + WIS + SR+ V +R R +++VG NTV DNP LTAR G G P+RIV+
Sbjct: 164 SVTGDSKWISGEYSREYVHAIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVD 223
Query: 285 QTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVME 339
+ +P E+ + S+A I+ T + + L SRGV +++ +N R++ME
Sbjct: 224 SSGRIPIESRVIQSDSEAGLILATTEKIHKDKETQLLSRGVRIIKTAPKNGKVNLRELME 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E GGTL SA+ +G+++KV F++PKIIGG +A TPV G+ +M A
Sbjct: 284 ELYKLEIDSVLLEGGGTLNFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDA 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ L DI E+ D+LI G++
Sbjct: 344 IALSDIRVERFDRDVLIEGYV 364
>gi|33861821|ref|NP_893382.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 362
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 192/375 (51%), Gaps = 27/375 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA +A G TSP+P G +I G + EG+ G AE A
Sbjct: 8 DIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLKK 67
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
R T Y+N+EP CH T V ++ GI RV V I +P + + G+ ++ L+ G+
Sbjct: 68 DARDGTIYVNLEPC-CHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGI 126
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+VH + +K +N IH+ + + V K+AM++D
Sbjct: 127 KVH----------LGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMD------------ 164
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
G++ +G + WI++K SR V LR DA+V+GGNT+R+D+P LT+R P+R+V
Sbjct: 165 GRVGLKNGKSKWITNKDSRSLVHSLRASFDAIVIGGNTLRKDDPFLTSRGIRNPEPLRVV 224
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
T+TLNLP ++NLWD A T+VV A KF K + GVE+ + N +
Sbjct: 225 FTKTLNLPVKSNLWDCKLARTLVVYDASTADEKFLKRIP-EGVEIEKLSSDNPILLSNLL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+G ++ WECG LA SA+ +G I ++ F+APKI+GG ++ P S+ +M + +
Sbjct: 284 AKKGCNNVFWECGPKLATSAMKAGCIQELMTFIAPKILGGVSSMNPFSDFEFTDMDEVFN 343
Query: 402 LIDICYEQVGPDMLI 416
L + +G D+ +
Sbjct: 344 LNEPETSFIGNDIYV 358
>gi|374995797|ref|YP_004971296.1| riboflavin biosynthesis protein RibD [Desulfosporosinus orientis
DSM 765]
gi|357214163|gb|AET68781.1| riboflavin biosynthesis protein RibD [Desulfosporosinus orientis
DSM 765]
Length = 369
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 204/385 (52%), Gaps = 34/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RRA ++A + G TSP+P GC+I ++ GEGY + GT AEV A+ A G
Sbjct: 11 DEKFMRRAFELAIMALGRTSPNPLVGCVIVHDD-QIVGEGYHHKAGTPHAEVHALAAAGD 69
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP G AL++A + RV++ + +P + GQ + LR G+Q
Sbjct: 70 KAHGATAYVTLEPCSHFGRTPPCADALIRAQVHRVIIAMEDPNPLVAGQGINRLREAGIQ 129
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V R+ LL+N + T+ +PF V+K AMTLD G
Sbjct: 130 VEV----------GLLREEALLMNEVFVKAITTGLPFVVYKSAMTLD------------G 167
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WIS++ SR V +LR R D ++VG T DNP LT R G P+R+++
Sbjct: 168 KIATETGDSQWISNEASRSYVHELRDRYDVILVGSETAIHDNPALTCRLPNGKDPIRLIV 227
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGA-RRKFQKYLASRGVEVVEFDI-----LNSRD 336
L + E A + + S +P I+ T R A K ++ VEV ++D+ LN
Sbjct: 228 DGMLRIDEHAQVLNSSKQSPCIIATSRSASEEKLNRFKNLEHVEVWQYDVERYVPLNM-- 285
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M RG+ S+L E GG LA + + LI KV F+APK IGG N P+P+S L + M
Sbjct: 286 LMRDLVHRGWTSVLLEGGGKLAGAFLQEKLIDKVELFIAPKFIGG-NGPSPLSGLHIQRM 344
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
+ A+ L +I + D+ + G+++
Sbjct: 345 ADAIMLHNINVDIRSGDLHVWGYIR 369
>gi|148240028|ref|YP_001225415.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Synechococcus sp. WH 7803]
gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. WH 7803]
Length = 372
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 134/380 (35%), Positives = 208/380 (54%), Gaps = 25/380 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ S+G + GEG+ G AEV A+ G+ R
Sbjct: 14 WMRRALALAALADGHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVGALAQAGAAAR 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A+++AGI RVVV + +P + G ++ LR G V
Sbjct: 74 GGTIIVTLEPC-CHHGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQRLRDAG--VE 130
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V+ L+++ + N ++R + P+ V K+AM+LD G+
Sbjct: 131 VISGVLEAEAAHQ--------NLAFVYRVRTGRPWGVLKWAMSLD------------GRT 170
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A S+G + WIS ++R V LR + DAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 171 ALSNGASQWISGPSARSWVHRLRAQCDAVIVGGGTVRADDPLLTSRGLRSPEPLRVVLSR 230
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP++A LWD S APT+VV A + L + GV+ E +M RG
Sbjct: 231 SLDLPDQAQLWDQSVAPTLVVHGLDAPAGARSRLDAVGVQRQELQACEPEALMAVLAQRG 290
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LAA+AI G + + A +APK++GG+ A TP+ LG M++ L+L +
Sbjct: 291 CNRVLWECGPGLAAAAIQQGCVQDIAAVIAPKLLGGEPARTPLGTLGFQAMNEVLELQGL 350
Query: 406 CYEQVGPDMLISGFLQPIPD 425
+++ D+L+ L P+ D
Sbjct: 351 QQQRLADDLLLQATLSPLSD 370
>gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
BKT015925]
gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
BKT015925]
Length = 372
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 212/385 (55%), Gaps = 31/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA +++ G T P+P G +I K+ GEGY G AE+ A++
Sbjct: 2 DLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDN-KIIGEGYHQYFGENHAEINALKNVKE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G +A+V++GI +V++G+R+P + G+ +R L++ G++
Sbjct: 61 DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +Q + EE +K VN I T+++PF + K AMTLD G
Sbjct: 121 V------IQGVLEEEIKK----VNEIFIKYITTKLPFCILKTAMTLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA G + WIS++ SR V ++R + ++VG T+ +DNP LT R + G RI
Sbjct: 159 KIATRDGDSKWISNEISRQYVHEIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRI 218
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
++ +P E+ + ++ S+A TI+VT A R+ + + S+G EV+ + + R ++Y
Sbjct: 219 IIDSKGRIPVESKVLNLESEANTIIVTTELASREKIEVIRSKGAEVIITPLCDDRVDLKY 278
Query: 341 FH----DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+R S+L E G L SA++ G++ KV +F++PKIIGGK A TPV +G +
Sbjct: 279 LMRELGERNIDSVLLEGGAELNYSALNEGIVDKVISFISPKIIGGKEAKTPVGGVGKSAI 338
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
S+ ++L +I Q D++I G+++
Sbjct: 339 SECVNLENIKVSQFEEDIVIEGYIK 363
>gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
Length = 372
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 209/385 (54%), Gaps = 31/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y++RA +++ G+T P+P G +I K+ GEGY G AE+ A++
Sbjct: 2 DLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDN-KIIGEGYHKRFGENHAEINALKNAKE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G V+A++++GI +V++G+ +P + G+ R L+ G++
Sbjct: 61 DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE +K VN I T+++PF + K AMTLD G
Sbjct: 121 V------VEGILKEEVKK----VNEIFIKYITTKLPFCILKTAMTLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA G + WIS++ SR V ++R + ++VG T+ +DNP LT R + G RI
Sbjct: 159 KIATRDGDSKWISNEVSRQYVHEIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRI 218
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD---- 336
++ +P EA + ++ S A TI+VT A R+ + + +G EV+ + ++R
Sbjct: 219 IVDSKGRIPIEAKVLNLESQAKTIIVTTELANREKIEVIRDKGAEVIITPLCDNRVDLKY 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ME R SIL E G L S ++ G++ KV +F++PKIIGGK A TPV LG +
Sbjct: 279 LMEELGKRNIDSILLEGGAELNYSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTI 338
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
S+ ++L +I + D++I G+++
Sbjct: 339 SEGINLENIKVSRFQEDIVIEGYIK 363
>gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
Length = 386
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 197/388 (50%), Gaps = 34/388 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ + G++ GEG+ G AEV A+ G R
Sbjct: 11 WMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVGALAQAGDAAR 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++ AGI RVVV + +P + G ++ LR GL+V
Sbjct: 71 GGTIVVTLEP-CCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQRLRDAGLEVI 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
S ++E N +HR + P+ V K+AM LD G+
Sbjct: 130 -------SGVLE---AEAAYQNRAFVHRVQTGRPWGVLKWAMGLD------------GRT 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A S+G + WIS +R V LR DAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 168 ALSNGASQWISGPPARAWVHQLRAGCDAVIVGGGTVRADDPLLTSRGRCASEPLRVVLSR 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKY---------LASRGVEVVEFDILNSRD 336
+L+LP+ A LWD + APT+V A L GV V + D
Sbjct: 228 SLDLPQSAQLWDQTVAPTLVAHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEA 287
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ RG +LWECG +LAA+A+ G + ++ +APK++GG+ A TP+ +LG M
Sbjct: 288 LFPELASRGCNRVLWECGPSLAAAALHQGCVQELAVVIAPKVMGGELARTPLGDLGFTAM 347
Query: 397 SQALDLIDICYEQVGPDMLISGFLQPIP 424
Q + + + +G D+L+ G + +P
Sbjct: 348 DQVVPVSLAAAQNLGRDLLLQGVVGAMP 375
>gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
Length = 377
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 203/393 (51%), Gaps = 36/393 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
FS E+ + RA ++A + G P+P G +I + K+ GEGY G AE+ A+
Sbjct: 7 FSSPEEVMH--RALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIHAL 64
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G +G T Y+ +EP CH T AL++AGI +VV+ +R+P H+ G + L
Sbjct: 65 NMAGEQSQGKTIYVTLEPC-CHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEEL 123
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G++V V ++E ++ + P + R T +P+ K+AMTLD
Sbjct: 124 KQAGIEVEV-------GLLESEAQALV---RPFVKRVTQGLPWIHAKWAMTLD------- 166
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +GH+ WIS+ SR+RV +LRGR DA++VG T D+P LTAR G
Sbjct: 167 -----GKIATRTGHSQWISNPRSRERVHELRGRMDAIMVGQRTATADDPLLTARPPGKRI 221
Query: 278 PMRIVLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS-- 334
P RIV+ L ++ L V++AP IVV A +K L GVEV++F S
Sbjct: 222 PARIVIDSQARLSVQSQLVQTVAEAPVIVVAHPSASQKKILQLEQAGVEVLQFSNCTSEN 281
Query: 335 ------RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
R M+ R +IL E GG+L S LI +V F+APKIIGG A TP+
Sbjct: 282 ESQPNLRLCMQELARRDMTNILVEGGGSLLGSCFDQRLIDEVHVFIAPKIIGGAEAVTPI 341
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
+ G+ + + +L D +Q+ D+ ++G ++
Sbjct: 342 AGKGLEMIPELHNLQDYQIQQLDSDIYVNGRVE 374
>gi|335039510|ref|ZP_08532670.1| riboflavin biosynthesis protein RibD [Caldalkalibacillus thermarum
TA2.A1]
gi|334180578|gb|EGL83183.1| riboflavin biosynthesis protein RibD [Caldalkalibacillus thermarum
TA2.A1]
Length = 365
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 204/383 (53%), Gaps = 29/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A+ ++G TSP+P G +I ++ G G G AEV A+
Sbjct: 6 DSYYMKLALQLAEATSGQTSPNPVVGAVIVKDF-EIVGLGAHLKAGEAHAEVHALAMAKE 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G A+++AGI RVV+ +P +RG+ V L++ GL+
Sbjct: 65 KAQGATMYVTLEPCSHYGRTPPCADAVIEAGIKRVVIAACDPNPLVRGRGVEKLKAAGLE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EA + + N ++HR PF K A TLD G
Sbjct: 125 VEV------GLFKKEAERLNEIFNYYIVHRR----PFVTLKTATTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRI 281
KIA +G + WI+ + +R V LR R DA++VG NTV RDNPRLT R G G P+R+
Sbjct: 163 KIATVTGESQWITGEEARADVHLLRHRHDAILVGINTVLRDNPRLTTRIAGQSGRHPVRV 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVM 338
+L L +P +A + APT + T A + K L +GV+VV+ ++ V+
Sbjct: 223 ILDSKLRIPLDAQVTHTEQAPTWIFTTDQAPAERVKALTEKGVKVVKISSETRVDVEQVL 282
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
Y ++G S+L E GG + AS + G ++KV A++APK+IGG AP G++ ++Q
Sbjct: 283 AYLGEQGIASVLVEGGGEVNASFLQGGFVNKVVAYLAPKLIGGNEAPGAFRGQGVLSLAQ 342
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
+L L D+ E +G D+ + G+L+
Sbjct: 343 SLHLKDVSVETLGQDLKVVGYLK 365
>gi|449019530|dbj|BAM82932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cyanidioschyzon merolae strain 10D]
Length = 524
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 212/435 (48%), Gaps = 84/435 (19%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIAT-STGKVAGEGYLYAQGTKPAEVQAVEAGG 103
D Y+ R +A + SP+P GC++ TG++ GEG+ G AE A++A
Sbjct: 101 DETYMDRCIQLALMAR--PSPNPPVGCVVVDPDTGRIVGEGFHPRAGYPHAEQYALQATF 158
Query: 104 SFCRGATAYLNME------------PGDCHGDHTAVS---------------ALVQAGIT 136
+ R A+++ N PG G H V+ +L+QA ++
Sbjct: 159 TTLRNASSHQNQHLAATVSEPVAALPGSARGMHVYVTLEPCNHYGRTPPCTESLIQAQVS 218
Query: 137 RVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATS 196
RVV+G R+P G LR G++V + E CL + HR
Sbjct: 219 RVVIGTRDPDPRTAGSGAERLRRAGIEVQ-----FGPRAAE-----CLKLYEGFQHRIHH 268
Query: 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVV 256
+ P + KYAM+LD GKIA +G A W+SS TSR V +LR R DAVVV
Sbjct: 269 QTPLGILKYAMSLD------------GKIATETGDARWVSSATSRRYVHELRARCDAVVV 316
Query: 257 GGNTVRRDNPRLTAR--------HGGGHTPMRIVLTQTL-----NLPEEANLWDVSDAPT 303
G TVRRD+P LT R G P+R+V+ + + P+ A LWD S APT
Sbjct: 317 GAGTVRRDDPALTVRLEESIDVPELGYGQPLRVVMCTSAARLWRDRPD-AKLWDTSVAPT 375
Query: 304 IVVTQRG-----------ARRKFQKYLASRGVEVVEFDIL----NSRDVMEYFHDRGYLS 348
++ A R+ L SRGV++ D L +R +M++ +D G +
Sbjct: 376 VLAVSSAGEVSSSKELDAAEREAILALRSRGVQIAYLDALLPLPPTRALMQWLYDYGCTT 435
Query: 349 ILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV-SELGMVEMSQALDLIDICY 407
+LWECGGTLA SA+ +HK+ FVAPK++GG+++PTP+ ++LG+ M +AL L
Sbjct: 436 VLWECGGTLATSAVRESAVHKILVFVAPKLVGGRSSPTPIAADLGVRNMEEALALRLGRM 495
Query: 408 EQVGP--DMLISGFL 420
E +G D+LI +L
Sbjct: 496 EVIGSGQDVLIEAYL 510
>gi|338813394|ref|ZP_08625523.1| riboflavin biosynthesis protein RibD [Acetonema longum DSM 6540]
gi|337274753|gb|EGO63261.1| riboflavin biosynthesis protein RibD [Acetonema longum DSM 6540]
Length = 394
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 204/384 (53%), Gaps = 31/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++ A D+A + G TSP+P G ++A GK G+G+ GT AEV A++A G
Sbjct: 8 DQQFMQMALDLAKQGLGRTSPNPMVGAVVAQD-GKAVGQGWHQRAGTPHAEVHALQAAGD 66
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++AGI RVVV + +P + G + L++ G+
Sbjct: 67 QANGATLYVTLEPC-CHHGKTPPCTDAVIKAGIRRVVVAMTDPNPCVGGGGIARLKAAGV 125
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + + +EA + +N I ++ +PF++ K AMTLD
Sbjct: 126 EV------VSGILAQEAAR----LNEVFIKWISTGLPFAILKTAMTLD------------ 163
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GKIA SG + WI+ +R RV LR R DA++ G TV D+P LT R GG P+RI
Sbjct: 164 GKIATVSGRSKWITGDAARQRVHMLRDRCDAILAGIGTVLADDPSLTTRLPQGGKNPIRI 223
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDV 337
+L +P +AN+ APTI+V A + L S+GVE++ L+ R++
Sbjct: 224 ILDSQARIPLDANVITDVLAPTIIVVGPHAPAEKLTALRSKGVEILAVRCRDGGLDLREL 283
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ R S+L E G + A I LI KV+ F+APK GG +AP PV G+ +
Sbjct: 284 FQTLGSRNITSVLVEGGAAVNAGLIRENLIDKVYWFIAPKFFGGISAPGPVGGEGIAAVD 343
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
QA+ L DI E + D++I+G+++
Sbjct: 344 QAVALEDIAVEAIDQDLMITGYVE 367
>gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
Length = 354
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 195/377 (51%), Gaps = 27/377 (7%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A++RRA +A + G TSP+P G ++ G++ GEG+ G AEV A+ G
Sbjct: 4 AWMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAGDRA 63
Query: 107 RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
+G T + +EP HG S A+++AGI RVV+ + +P + G + LR+ GL
Sbjct: 64 KGGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGL--- 120
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
D+ S +++ N +HR + P+ K+AM LD G+
Sbjct: 121 ----DVISGVLQ---AEAAFQNRAFLHRVRTGRPWGTLKWAMGLD------------GRT 161
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A S+G + WIS T+R V LR +SDAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 162 ALSNGESQWISGPTARRWVHQLRSKSDAVIVGGGTVRADDPLLTSRGRRKPEPLRVVLSR 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
++ LP A LWD S A T+V G + Q + G + + + +M+ +RG
Sbjct: 222 SMELPVTAQLWDTSLASTLVA--HGPEAQEQPF--PHGPQRLLLSASEPKPLMQELANRG 277
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LAA+AI G I +V A VAPK++GG A TP+ ELG M Q + +
Sbjct: 278 CNRVLWECGPELAAAAIRQGCIQEVAAVVAPKLMGGVAARTPLGELGFTAMDQVVAGSCL 337
Query: 406 CYEQVGPDMLISGFLQP 422
+G D L L P
Sbjct: 338 SPVPLGGDWLFQLRLTP 354
>gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
Length = 360
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 197/363 (54%), Gaps = 28/363 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A K G+T+P+P G +I + GK+ GEGY G AEV A++
Sbjct: 4 YMKRALTLAKKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVENVE 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EARK +N + T++ PF + K AM++D GKIA
Sbjct: 123 ------GMMEKEARK----LNEIFVKYITTKFPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI+++ SR +RGR A++VG NTV +DNP LT R G P+RI++
Sbjct: 161 CYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKNPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P ++N+ A TI+ T +K L +EV+ N +++M
Sbjct: 221 GRIPLDSNVIRDKTAKTIIATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA+ G++ KV F++P+IIGGKNA TPV +G ++ +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIEL 340
Query: 403 IDI 405
D+
Sbjct: 341 KDV 343
>gi|376261623|ref|YP_005148343.1| riboflavin biosynthesis protein RibD [Clostridium sp. BNL1100]
gi|373945617|gb|AEY66538.1| riboflavin biosynthesis protein RibD [Clostridium sp. BNL1100]
Length = 367
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 208/381 (54%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +IA G T+P+P G +I G++ EG+ A G AEV A + +
Sbjct: 7 YMKRALEIAKGGWGRTNPNPLVGAVIVKD-GEIISEGFHEALGCAHAEVCAFQNATTDIS 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+N+EP +G A+V++GI VVV + +P + G+ ++ L+ + V V
Sbjct: 66 GATIYVNLEPCSHYGRTPPCAKAIVESGIKEVVVAMVDPNPKVAGKGIQILKDANINVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++EE K +N IH T R+PF + K AMTLD GKIA
Sbjct: 126 -------GVLEEEAKR---LNEIFIHYITKRLPFVIMKTAMTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+ +G + WIS + SR+ V +R R +++VG NT+ DNP LTAR G G P+RIV+
Sbjct: 164 SVTGDSKWISGEPSREYVHKIRNRVSSIMVGVNTIINDNPSLTARPSSGDGIDPVRIVVD 223
Query: 285 QTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVME 339
+P ++ ++ S A I+ T + + L SRGV +++ +N R++M+
Sbjct: 224 SCGRIPMDSKVIYCDSKAGLILATTDKINKDKETQLLSRGVRIIKTAEKNGKVNLRELMK 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E GGTL SA+ +G+++KV +F++PKIIGG +A TPV G+ +M A
Sbjct: 284 ELYKLEIDSVLLEGGGTLNFSALEAGIVNKVMSFISPKIIGGSSAVTPVGGNGIDKMKDA 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ L DI E+ D+LI G++
Sbjct: 344 IALSDIRVEKFDRDVLIEGYI 364
>gi|423656253|ref|ZP_17631552.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD200]
gi|401291372|gb|EJR97048.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD200]
Length = 365
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 196/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQVRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
Length = 365
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 196/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
Length = 372
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 205/380 (53%), Gaps = 25/380 (6%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++A + G+TSP+P G ++ +G + GEG+ G AEV A+ G R
Sbjct: 14 WMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVGALAQAGDAAR 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T AL++AGI RVVV + +P + G ++ LR G V
Sbjct: 74 GGTIIVTLEPC-CHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQRLRDAG--VE 130
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V+ L+++ ++ N +HR + P+ + K+AM+LD G+
Sbjct: 131 VISGVLEAEAAQQ--------NYAFVHRVRTGRPWGLLKWAMSLD------------GRT 170
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS T+R V LR + DAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 171 ALPNGASQWISGSTARTWVHRLRAQCDAVIVGGGTVRADDPLLTSRGLRSPEPLRVVLSR 230
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
L+LP++A +WD S APT+VV + A + + L + G++ +M RG
Sbjct: 231 RLDLPDQAQIWDQSVAPTLVVHGQDAPAEARDRLEALGLQREVLPACGPESLMAVLAQRG 290
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LAA+A+ + ++ A +APK++GG+ A TP+ LG M + + L +
Sbjct: 291 CNRVLWECGPELAAAALQQACVQELAAVIAPKLLGGEPARTPLGHLGFQAMEEVVVLQGL 350
Query: 406 CYEQVGPDMLISGFLQPIPD 425
+++ D+L+ L + D
Sbjct: 351 RQQRLTDDLLLQVTLSSLSD 370
>gi|384187377|ref|YP_005573273.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410675695|ref|YP_006928066.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis Bt407]
gi|452199747|ref|YP_007479828.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|409174824|gb|AFV19129.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis Bt407]
gi|452105140|gb|AGG02080.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 365
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP +G A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L++K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|392426227|ref|YP_006467221.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfosporosinus acidiphilus SJ4]
gi|391356190|gb|AFM41889.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfosporosinus acidiphilus SJ4]
Length = 390
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 208/385 (54%), Gaps = 30/385 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y+ +A ++A + G TSP+P GC+I + ++ G+GY GT AE+ A+
Sbjct: 9 KLTDEIYMSKALELAALALGRTSPNPVVGCVIVKND-QIVGKGYHRKAGTPHAEIHALSE 67
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
RGATAY+ +EP G S AL++AG+ RVVV +++P + G ++ L
Sbjct: 68 AKDQARGATAYVTLEPCSHFGRTPPCSDALIRAGVKRVVVALKDPNPLVAGGGIQRLHEA 127
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V V ++ ++ EA T+++PF ++K A+TLD
Sbjct: 128 GIPVEVGVMSHEAAMLNEA----------FFKAITTKMPFVLYKTALTLD---------- 167
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA +G + W+S+++SR V LR D ++VG T+ RDNP LT R GG P+R
Sbjct: 168 --GKIATETGDSRWVSNESSRRYVHQLRNYYDVILVGSGTILRDNPALTCRLPGGRDPIR 225
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGAR-RKFQKYLASRGVEVVEFDILNSRDVM 338
+++ L +PE + + S ++P I+ T + A K ++ +E+ ++D V
Sbjct: 226 LIVDGELRIPENSQVLTSSGESPCIIATTKAAPIEKLKQLTKLENLEIWQYDTPRHVPVK 285
Query: 339 EYFHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
E D RG+ S+L E GGTLA + I + K+ F+APK++GG N P+P+S L +
Sbjct: 286 EMLKDLFSRGWNSVLLEGGGTLAGTLIQEQCVDKLECFIAPKLVGG-NGPSPLSGLHIPL 344
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
MS+A+DL D+ + D+ ++G+L
Sbjct: 345 MSEAIDLHDLQVDTTFGDIHVTGYL 369
>gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 360
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 28/363 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A K G+T+P+P G +I + GK+ GEGY G AEV A++
Sbjct: 4 YMKRALTLAKKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVENVE 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EARK +N + T++ PF + K AM++D GKIA
Sbjct: 123 ------GMMEKEARK----LNEIFVKYITTKFPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI++ SR+ +RGR A++VG NTV +DNP LT R G P+RI++
Sbjct: 161 CYNGNSKWITNGKSREFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKNPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P ++N+ A TI+ T +K L +EV+ N +++M
Sbjct: 221 GRIPLDSNVIRDKTAKTIIATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA G++ KV F++P+IIGGKNA TPV +G ++ +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSAFKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIEL 340
Query: 403 IDI 405
D+
Sbjct: 341 KDV 343
>gi|402832980|ref|ZP_10881603.1| riboflavin biosynthesis protein RibD [Selenomonas sp. CM52]
gi|402281723|gb|EJU30349.1| riboflavin biosynthesis protein RibD [Selenomonas sp. CM52]
Length = 367
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 201/383 (52%), Gaps = 29/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++R A +A + G TSP+P G +I G++ G G+ GT AEV A+ G
Sbjct: 3 QDEDFMREALLLAANARGRTSPNPLVGAVI-VREGRIVGAGWHRKAGTPHAEVHALAMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP HG ALV+AG+ RVV + +P + G+ L + G+
Sbjct: 62 DLAHGATAYVTLEPCSHHGRTGPCAEALVKAGVKRVVAAMLDPNPLVAGKGKAMLEAAGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + EEAR+ +N + T ++PF K AMTLD
Sbjct: 122 EVTV------GVLAEEARR----LNEAYLKWVTEKLPFVTLKTAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA ++G + WI+ + +R RV ++R +DA+VVG TV D+P LT R G G P+R
Sbjct: 160 GKIATATGKSQWITGEAARQRVHEMRDVADAIVVGIGTVLADDPSLTTRLADGTGRNPVR 219
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDV 337
+++ P A + A T++ A + L + GVE+V E + ++ +
Sbjct: 220 VIVDSRARTPLAAKVVQDGAAKTLIAVTCAAPEERCAALEAAGVEIVRAGEGERVDLDAL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M R S+ E GGTL S +++GL+ K+ AF+APKI+GG+ A TPV G E++
Sbjct: 280 MRLLAARDLTSVFVEGGGTLNFSLLAAGLVDKIHAFIAPKIVGGREALTPVEGAGFAELA 339
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
A L + EQVG D+L++G++
Sbjct: 340 DAALLTRLTAEQVGADILLTGYV 362
>gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
Length = 360
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 199/363 (54%), Gaps = 28/363 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G+T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALKLAEKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G +++ L+ G++V V
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EARK +N + T+++PF + K AM++D GKIA
Sbjct: 123 ------GMMEKEARK----LNEIFVKYITTKIPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI+++ SR +RGR A++VG NTV +DNP LT R G +P+RI++
Sbjct: 161 CYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKSPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFH 342
P +N+ A TI+ T +K L +EV+ N + ++M
Sbjct: 221 GRTPLASNVIRDKAAKTIIATTELMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA+ G++ KV F++P+IIGGKNA TPV +G ++ +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIEL 340
Query: 403 IDI 405
D+
Sbjct: 341 KDV 343
>gi|433653763|ref|YP_007297471.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433291952|gb|AGB17774.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 356
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 30/379 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A G T+P+P G +I + G++ GEGY G AE+ A+++ G
Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKN-GRIIGEGYHEYYGGPHAEINALKSVKEDVIG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP CH T V A+V++GI V + + +P + + G+ ++ L+ GL V+
Sbjct: 60 AQLYVTLEPC-CHYGKTPPCVDAIVKSGIKDVYIAMEDPNKLVSGKGIKHLKEAGLNVY- 117
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEA K +N I T++ P+ + K AMT+D GKIA
Sbjct: 118 -----TGLLKEEAEK----INEIFIKYITTKKPYVILKSAMTID------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
++G + WI+++ SR+ V +RG A++VG NTV +DNP LTAR G P+R+++
Sbjct: 157 TTTGDSKWITNEKSREHVHIMRGCVMAIMVGVNTVIKDNPYLTARIDGFKNPLRVIVDSR 216
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P +N+ A TIV T K K L+ GV+VV D LN + +M+
Sbjct: 217 GRIPLNSNVVIDKSAKTIVATTDMMHYKKVKALSDLGVDVVVLDKLNGEVDLKKLMDMLG 276
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S++ E GGTL SA+ G++ KV ++APKIIGG N+ TPV G + A+ +
Sbjct: 277 ERGIDSVIIEGGGTLNYSALKEGIVDKVMFYIAPKIIGGSNSLTPVEGKGFDLIKDAIIV 336
Query: 403 IDICYEQVGPDMLISGFLQ 421
+ ++ D+LI G+++
Sbjct: 337 EKLDVKRFDDDILIEGYIK 355
>gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
Length = 366
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 198/376 (52%), Gaps = 27/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A G TSP+P G ++ + G + G G G AEV A+ G
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVV-VNDGTIVGIGAHLKAGEPHAEVHAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G L++AG+ RVVV +P + G+ + LR G+
Sbjct: 63 KARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA + +N H ++ PF KYA +LD G
Sbjct: 123 VEV------GILKEEADE----LNRMFFHYIATKTPFVTIKYACSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIV 282
KIA ++G + WI+S +R+ V LR + DA++VG NTV DNP+LT R G P+R++
Sbjct: 161 KIATATGESKWITSSAAREDVHRLRAQHDAILVGVNTVMADNPKLTVRIGQQRKNPLRVI 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L+ P +A++ +A T ++T G R+ K GV +V ++ R+V+
Sbjct: 221 LDTNLHTPLDAHVVVDKEAETWIITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRL 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++ S+ E G + S + SG++++V A++APK+IGG+ APTPV LG +++A+
Sbjct: 281 LGEQRITSLFVEGGSRIHDSFLRSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAM 340
Query: 401 DLIDICYEQVGPDMLI 416
+L E++GPD+ I
Sbjct: 341 ELDIRQIEKIGPDIKI 356
>gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
flueggei ATCC 43531]
gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
flueggei ATCC 43531]
Length = 386
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 202/383 (52%), Gaps = 30/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y+R A +A+ + G TSP+P G LI G VA G+ A G AE+ A+ G
Sbjct: 24 DESYMREALHLAEFARGRTSPNPLVGALI-VRDGIVAASGWHRAAGEPHAEIHALRMAGE 82
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP G A++ AGITRVVV +R+P + G+ + L + G++
Sbjct: 83 LARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAAGIE 142
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + EAR+ NA + T++ P K AMTLD G
Sbjct: 143 V------VTGVCAAEARRQ----NAAFLTWVTTKRPLVTLKTAMTLD------------G 180
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA+ +G + WI+ + +R RV ++R SDA++VG TV D+P LT R H G P+R+
Sbjct: 181 KIASHTGASRWITGEEARLRVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRV 240
Query: 282 VLTQTLNLPEEANLWDVSDAPTIV-VTQRGARRKFQKYLASRGVEVVEF--DILNSRDVM 338
VL P +A L APT++ V++R +R+ + A G EVV + + V+
Sbjct: 241 VLDSAARTPHDARLVTDGAAPTVIAVSERADQRRVDRLRAC-GAEVVTLGAERVELPRVL 299
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ R S+L E G + S ++ G + ++ AF+AP ++GG APTPV +G +
Sbjct: 300 DWLGARDCTSLLVEGGAAVNWSFLAGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQE 359
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
AL L D+ EQVG D+L++G L
Sbjct: 360 ALHLYDMHVEQVGADLLVTGSLH 382
>gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 356
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 203/379 (53%), Gaps = 30/379 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A G T+P+P G +I + G++ GEGY G AE+ A+++ G
Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKN-GRIIGEGYHEYYGGPHAEINALKSVKEDVIG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP CH T V A+V++GI V + + +P + + G+ ++ L+ GL V+
Sbjct: 60 AQLYVTLEPC-CHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVY- 117
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEA K +N I T++ P+ + K AMT+D GKIA
Sbjct: 118 -----TGLLKEEAEK----INEIFIKYITTKKPYVILKSAMTID------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+++ SR+ V +RG A++VG NTV +DNP LTAR G P+R+V+
Sbjct: 157 TYTGDSKWITNEKSREHVHIMRGCVMAIMVGVNTVIKDNPYLTARIDGFKNPLRVVVDSR 216
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P EAN+ A TIV T K K L GV+V D LN + +M+
Sbjct: 217 GRIPLEANVVIDKSAKTIVATTDMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLG 276
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S++ E GGTL SA+ G++ KV ++APKIIGG N+ TPV G+ + A+ +
Sbjct: 277 ERGIDSVIIEGGGTLNYSALKEGIVDKVMFYIAPKIIGGSNSLTPVEGKGIDLIKDAIMI 336
Query: 403 IDICYEQVGPDMLISGFLQ 421
+ ++ D+LI G+++
Sbjct: 337 EKLDVKRFDDDILIEGYIK 355
>gi|352093492|ref|ZP_08954663.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8016]
gi|351679832|gb|EHA62964.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8016]
Length = 365
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 201/379 (53%), Gaps = 31/379 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ + G + GEG+ G AEV A+ G+ +
Sbjct: 11 WMRRALQLAALAEGQTSPNPLVGAVVLDAQGVLVGEGFHAKAGQAHAEVGALAQAGARAQ 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++ AGI RVVV + +P + G ++ LR GL+V
Sbjct: 71 GGTIIVTLEP-CCHQGRTPPCAQAVIAAGIQRVVVALTDPDPRVAGGGIQRLRDAGLEV- 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ + EA + N +HR + P+++ K+AM+LD G+
Sbjct: 129 -----ITGVLEAEAAQQ----NRAFVHRVQTGRPWALLKWAMSLD------------GRT 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS+ +R V LR DAV+VG T+R DNP LT+R G P+R+VL++
Sbjct: 168 ALPNGESQWISAPPARGWVHQLRAGCDAVIVGAGTLRADNPLLTSRGGRSPEPLRVVLSR 227
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+L+LP +A LWD S APT++ G A R + G E +E D++ +R
Sbjct: 228 SLDLPAQAQLWDTSLAPTLLAHGPGSADRPLPE-----GPEPLELFASEPLDLLHALAER 282
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G +LWECG LAA+A+ G + ++ +APK++GG A T + +LG M Q + L
Sbjct: 283 GCNRVLWECGPALAAAALQQGCVQELAVVIAPKLLGGTLARTSLGDLGFSAMDQVIPLSA 342
Query: 405 ICYEQVGPDMLISGFLQPI 423
+ E++G D+L+ P+
Sbjct: 343 LKAERLGSDLLLQAITPPL 361
>gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
Length = 367
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 200/383 (52%), Gaps = 29/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++R A +A + G T+P+P G +I G++ G G+ GT AEV A+ G
Sbjct: 3 QDEDFMREALLLAANARGRTAPNPLVGAVI-VREGRIVGAGWHRKAGTPHAEVHALAMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP HG ALV+AG+ RVV + +P + G+ L + G+
Sbjct: 62 DLAHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + EEAR+ +N + T ++PF K AMTLD
Sbjct: 122 EVTV------GVLAEEARR----LNEAYLKWVTEKLPFVTLKTAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA ++G + WI+ + +R RV ++R +DA+VVG TV D+P LT R G G P+R
Sbjct: 160 GKIATAAGKSQWITGEAARRRVHEMRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVR 219
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDV 337
+++ P A + A T+V A + L + GVEVV E + ++ +
Sbjct: 220 VIVDSRARTPLAATVVQDGAAKTLVAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M R S+ E GGTL S +++GL+ K+ AF+APKI+GGK A TPV G E++
Sbjct: 280 MRLLAARDMTSVFVEGGGTLNFSLLAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELA 339
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
A L + EQVG D+L++G++
Sbjct: 340 DAAVLTRLTAEQVGADILLTGYV 362
>gi|423586219|ref|ZP_17562306.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD045]
gi|401230962|gb|EJR37467.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD045]
Length = 365
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 195/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQVRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K + L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTCIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ D+ + QVG D G+
Sbjct: 340 IEFKDVSFTQVGKDYRFIGY 359
>gi|148242850|ref|YP_001228007.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Synechococcus sp. RCC307]
gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. RCC307]
Length = 366
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 192/361 (53%), Gaps = 23/361 (6%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P GC++ + G++ GEGY G AEV A+ G +G T Y+ +EP
Sbjct: 25 GRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMALRRAGDRAKGGTLYVTLEPCCH 84
Query: 121 HGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG S A++ AG+ RVV+ + +P + G + L++ G++V + Q++ ++
Sbjct: 85 HGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLKAAGMEV--ISGVRQAEAAQQN 142
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
R +HR + P+ + K+AM+LD G+ A +G + WISS
Sbjct: 143 RA--------FLHRIRTGRPWGLLKWAMSLD------------GRTALPNGASQWISSPP 182
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V LR DAV+VGG TVR DNP LT+R P+R+VL++TL+LP +A LWD +
Sbjct: 183 ARSWVHHLRAAVDAVIVGGGTVRADNPLLTSRGQRSPEPLRVVLSRTLDLPSDAQLWDQT 242
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359
A T+V A + ++ L GVE +E ++E RG +LWECG LAA
Sbjct: 243 SATTLVAHGPEAPAQARQQLDQLGVERIELVACEPAALLEALAQRGCNRVLWECGPQLAA 302
Query: 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
+AI+SG + + A VAP ++GG A TP+ +LG M Q + L + +G D L
Sbjct: 303 AAIASGCVQETAAVVAPALLGGAAARTPLGDLGFTAMDQVIRLAPNIPQALGSDWLFQSL 362
Query: 420 L 420
L
Sbjct: 363 L 363
>gi|423641604|ref|ZP_17617222.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD166]
gi|401277554|gb|EJR83493.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD166]
Length = 365
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 195/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQVRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKVNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K + L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ D+ + QVG D G+
Sbjct: 340 IEFKDVSFTQVGKDYRFIGY 359
>gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 360
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 200/364 (54%), Gaps = 30/364 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALTLAEKGWGHTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEE-ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
I+E+ ARK +N + T++ PF + K AM++D GKI
Sbjct: 123 -------GIMEKKARK----LNEIFVKYITTKFPFVIVKSAMSID------------GKI 159
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G++ WI+++ SR +RGR A++VG NTV +DNP LT R G +P+RI++
Sbjct: 160 ACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKSPVRIIVDS 219
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYF 341
+P ++N+ A TI+ T +K L +EV+ N +++M
Sbjct: 220 RGRIPFDSNVIRDKTAKTIIATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+RG S+L E GGTL SA+ G++ KV F++P+IIGGKNA TPV +G ++ +++
Sbjct: 280 GERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIE 339
Query: 402 LIDI 405
L D+
Sbjct: 340 LKDV 343
>gi|373858065|ref|ZP_09600804.1| riboflavin biosynthesis protein RibD [Bacillus sp. 1NLA3E]
gi|372452287|gb|EHP25759.1| riboflavin biosynthesis protein RibD [Bacillus sp. 1NLA3E]
Length = 363
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 201/384 (52%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ A ++A + G T+P+P G +I G V G G G AEV A G
Sbjct: 4 DQYFMNLALELAATAKGKTNPNPLVGAIIVKD-GMVVGSGLHRKAGEPHAEVHAFRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQ-AGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ AT Y+ +EP +G + LV+ +G+ RVV+ +++P + G+ ++ L+ G++
Sbjct: 63 HAKDATLYVTLEPCSYYGKTPPCAELVKNSGVRRVVIAMKDPNPLVAGRGIKILKEAGIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
+ V + +EAR L+N IH + PF + K AMTLD G
Sbjct: 123 IEV------GIMEQEAR----LLNERFIHNMMTSTPFIISKVAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
K+AA +GH+ W++ +R+ V LR +DA++VG TV DNP+LT R GG P+RI+
Sbjct: 161 KLAAYNGHSKWVTGSEARESVHQLRDETDAIMVGIGTVLADNPQLTTRLPEGGKNPIRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD------ 336
L L +P +ANL D S+A T +VT+ A + L +G V+F N D
Sbjct: 221 LDSNLRMPVDANLTDTSEAQTWIVTREEADQNKLALLKEKG---VQFIFTNKDDTGLDLH 277
Query: 337 -VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
V++ +RG IL E G L + + +GLI+K ++APK++GG+N+ TP + +
Sbjct: 278 LVLQRLFERGVTDILLEGGSELNGAFLRAGLINKFLVYIAPKLLGGRNSLTPFAGVDSES 337
Query: 396 MSQALDLIDICYEQVGPDMLISGF 419
M++AL++ E G D+ I+ +
Sbjct: 338 MNEALNVEIHSIENYGRDVCITAY 361
>gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
Length = 360
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 195/363 (53%), Gaps = 28/363 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G+T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALTLAEKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI +V + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EARK +N T++ PF + K AM++D GKIA
Sbjct: 123 ------GMMEKEARK----LNEIFFKYITTKFPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI+++ SR +RGR A++VG NTV +DNP LT R G P+RI++
Sbjct: 161 CYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKNPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P +N+ A TI+ T +K L +EV+ N +++M
Sbjct: 221 GRIPLNSNVIRDKTAKTIIATTELMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA G++ KV F++P+IIGGKNA TPV +G + +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSAFKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSSIENSIEL 340
Query: 403 IDI 405
D+
Sbjct: 341 KDV 343
>gi|423649248|ref|ZP_17624818.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD169]
gi|401283821|gb|EJR89698.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD169]
Length = 365
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 195/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQVRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K + L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ D+ + QVG D G+
Sbjct: 340 IEFKDVSFTQVGKDYRFIGY 359
>gi|410667743|ref|YP_006920114.1| riboflavin biosynthesis protein RibD [Thermacetogenium phaeum DSM
12270]
gi|409105490|gb|AFV11615.1| riboflavin biosynthesis protein RibD [Thermacetogenium phaeum DSM
12270]
Length = 382
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 207/381 (54%), Gaps = 33/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA ++A G TSP+P G ++ + GEGY GT AEV A+ A G +
Sbjct: 12 FMSRALELAALGKGKTSPNPMVGAVVVRDD-VIIGEGYHMKAGTPHAEVHALRAAGDLAK 70
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+T Y+ +EP CH T A+++AGI +VV+ +P + G+ +R+L+ G++V
Sbjct: 71 GSTLYVTLEPC-CHYGKTPPCTEAIIKAGIQKVVIATCDPNPLVAGKGIRSLKEAGIEVQ 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V + EEA++ +N + +P+ V K AM+LD GKI
Sbjct: 130 V------GIMEEEAQR----LNEAFFKYIRTGLPYVVLKVAMSLD------------GKI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLT 284
A SG + WI+ + +R +V LR SDAV+VG TV D+P LT R P+R+++
Sbjct: 168 ATCSGDSKWITGEKARLKVQHLRAESDAVMVGIGTVLADDPLLTVRLPDESKRPLRVIVD 227
Query: 285 QTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYL-ASRGVEVVEF----DILNSRDVM 338
+L+LP ++ L + +AP +V G +K +K L RGVEV++ D+++ +++
Sbjct: 228 SSLHLPVDSRLVQTAGEAPVVVAAVPGKYQKDKKLLLEKRGVEVLDMPGEDDMVSIEELL 287
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ RG +++L E G TL ASA+ + ++ K F++P IIGGKNAP G + +
Sbjct: 288 QELGRRGVMTLLLEGGATLNASALQADIVDKFVFFLSPLIIGGKNAPGAFGGSGFDTLDK 347
Query: 399 ALDLIDICYEQVGPDMLISGF 419
AL L + E+VG D LISG+
Sbjct: 348 ALRLESLKIERVGEDFLISGY 368
>gi|399889459|ref|ZP_10775336.1| riboflavin biosynthesis protein RibD [Clostridium arbusti SL206]
Length = 362
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 202/380 (53%), Gaps = 29/380 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA ++A K G+T+P+P G +I + K+ GEGY + G AE+ A
Sbjct: 5 YMKRALELAKKGTGYTNPNPLVGAVIVKNN-KIIGEGYHHFYGGNHAEIDAFNNAMEDVT 63
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G A+V+ GI +VV+G+ +P + G +R L+ G++V
Sbjct: 64 GATMYVTLEPCSHYGKTPPCAKAIVEKGIKKVVIGLEDPNPLVSGNGIRILKDNGIEV-- 121
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + +E RK +N + +S++PF + K AMTLD GKIA
Sbjct: 122 ----VTGILEDEGRK----LNEIFLKYISSKLPFCILKTAMTLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ +G + WI+++ SR+ V LR + ++VG TV DNP LT R G RI++
Sbjct: 162 SYTGDSKWITNELSRNYVHKLRHKVSGIMVGIGTVLADNPFLTTRLKNGSDATRIIVDSN 221
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEYF 341
L + +A++ + S+A TI+ T A ++ K L + ++ + + D +N +M
Sbjct: 222 LRISLDASVLTLKSNAKTIIATTEKANKEKLKLLKNMDIDTIITPAKNDKVNLSYLMNAL 281
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S+L E G TL SA+ G+I KV++F++PK IGG A TP+ G+ + A+
Sbjct: 282 GENKIDSVLLEGGSTLNYSALEEGIIDKVYSFISPKFIGGSMAKTPIGGQGISLIKNAIT 341
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L +I E+ D++I G+++
Sbjct: 342 LKNISIEKFEEDLMIEGYIR 361
>gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus
hydrogenoformans Z-2901]
Length = 361
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 198/382 (51%), Gaps = 32/382 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RA +A ++ G TSP+P G +I G + GEGY G AE +A++ G
Sbjct: 3 DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP CH T A++ AGI +VVV +R+P + G+ + LR+ G+
Sbjct: 63 KARGGTMYVTLEPC-CHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ + EEA +N + +PF K+AMT+D
Sbjct: 122 EV------VEGVLAEEA----FYLNEKFFKFIKTGLPFISLKWAMTVD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + W+S + SR V LR DAV+VG T+ DNP LT R G P RIV
Sbjct: 160 GKIATETYDSRWVSGEKSRSFVHRLRNEYDAVLVGAKTLIIDNPLLTCRIPQGRNPYRIV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYF 341
L+ + NLPE N++ + I++T A +K K++++ ++ + +R ++ E F
Sbjct: 220 LSGSGNLPEGLNIFQLEKEKNILIT---ASKKLPKHVSNGFGHIITTPLGENRINIKEAF 276
Query: 342 HD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ G +SIL E G + AS + + L K + F+APKI+GGKNAP P+ +L + M
Sbjct: 277 LELSRLGIISILVEGGAVVHASLLQNRLADKAYIFIAPKIVGGKNAPGPIGDLKISLMKD 336
Query: 399 ALDLIDICYEQVGPDMLISGFL 420
AL L + G D+ I G+
Sbjct: 337 ALPLAIHKLRRFGEDVFIEGYF 358
>gi|345016468|ref|YP_004818821.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344031811|gb|AEM77537.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 360
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 196/363 (53%), Gaps = 28/363 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G+T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALTLAEKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ ++ARK +N + T++ PF + K AM++D GKIA
Sbjct: 123 ------GMMEKDARK----LNEIFVKYITTKFPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI+++ SR +RGR A++VG NTV DNP LT R G P+RI++
Sbjct: 161 CYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVINDNPMLTTRLEGYKNPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
+P ++N+ A TI+ T +K L +EV+ N +++M
Sbjct: 221 GRIPLDSNVIRDKTAKTIIATTELMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA+ ++ KV F++P+IIGGKNA TPV +G + +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSALKERIVDKVMFFISPRIIGGKNALTPVEGIGFSNIENSIEL 340
Query: 403 IDI 405
D+
Sbjct: 341 KDV 343
>gi|393200940|ref|YP_006462782.1| pyrimidine deaminase [Solibacillus silvestris StLB046]
gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046]
Length = 371
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 202/385 (52%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A + G T+P+P G +I G + G G G AEV AV G
Sbjct: 4 DQDYMQLALELAASARGNTNPNPLVGAVIVKD-GVIVGTGLHRKAGEPHAEVHAVNMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ AT Y+ +EP +G + L+ ++G RVVV +P + G+ +R LR G++
Sbjct: 63 HTKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA+K +N IH + PF V K+AMTLD G
Sbjct: 123 VEV------GVLQEEAQK----LNERFIHNMLTERPFVVAKFAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG---GHTPMR 280
KIA +GH+ WI+ + +R V +LR D ++VG TV DNP+LT R G P+R
Sbjct: 161 KIATYNGHSQWITGEEARADVHELRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRD 336
+VL TL P +A++ D +DA TI+VT + + + L GVE++ D L+ D
Sbjct: 221 VVLDSTLKTPVDAHIADTTDARTIIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIED 280
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV--SELGMV 394
+++ + +G +L E GG + AS + G I + ++APK++GGKN+ TP +++ +
Sbjct: 281 MLKALYKKGITHLLVEGGGNVNASFLRGGFIDQYIVYIAPKVLGGKNSITPFTGTDVETI 340
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
+++ L+ ++ + VG D+ I +
Sbjct: 341 DLANQLEFGEVTH--VGEDLRIIAY 363
>gi|159903849|ref|YP_001551193.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9211]
gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9211]
Length = 365
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 200/379 (52%), Gaps = 32/379 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA +A + G T+P+P G ++ + GEG+ G+ AEV+A+ G +
Sbjct: 14 WMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAAK 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV- 164
G T + +EP CH T ++++G++RVVVG+++P + G +R L+ G++V
Sbjct: 74 GGTLLVTLEPC-CHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVI 132
Query: 165 -HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
+L E++ + N I R + P+ + K AM+ D G
Sbjct: 133 TGILKEEISFQ------------NRAFIFRIKTGRPWGILKLAMSFD------------G 168
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+ S+G + WI+S+ +R++V LR + DAV++GG T+R D+P LT+R P+R+V
Sbjct: 169 RTGLSNGKSKWITSQEAREKVHALRAKCDAVIIGGGTLRADDPLLTSRGLRNPEPLRVVF 228
Query: 284 TQTLNLPEEANLWDVSDAPTIVV-TQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+Q+L+LP A +W A T+V + A Q+ VE ++ N R+++E
Sbjct: 229 SQSLSLPIGAQIWRTESAKTLVAFSNENALPLIQEL--PENVEKLKLHESNPRELLEELA 286
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+G ILWECG +LA SAI + ++ F+APK++GG A T + G + QAL L
Sbjct: 287 KKGCNRILWECGPSLATSAIKQNCVQEIVIFMAPKLLGGLPAMTLLGNFGFDSLDQALIL 346
Query: 403 IDICYEQVGPDMLISGFLQ 421
++ + G D +++ FL+
Sbjct: 347 KEVSLAKSGKDFVLNTFLE 365
>gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 358
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 ATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+L TL
Sbjct: 158 SSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T K +K L + GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDGEAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L++K+ +VAPKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + QVG D G+
Sbjct: 338 ISFTQVGKDYRFIGY 352
>gi|431793868|ref|YP_007220773.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784094|gb|AGA69377.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 365
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 198/368 (53%), Gaps = 36/368 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA +A ++ G TSP+P GC+I + G++ GEGY GT AEV A+ A
Sbjct: 3 QDQIYMSRALQLAAQAVGRTSPNPLVGCVI-VNNGRIVGEGYHQKAGTPHAEVHALCAAD 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ +GATAY+ +EP G AL++AGI RVVV +++P + G+ + LR G+
Sbjct: 62 TNAQGATAYVTLEPCSHFGKTPPCADALIEAGIKRVVVAMQDPNPLVGGRGISRLRDAGI 121
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
QV V L ED EAR +N + + +PF ++K A+TLD
Sbjct: 122 QVDVGLKED-------EARS----LNKGFLKAIQAELPFVLYKSALTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA SG + WI+++ SR V LR + D ++VG TV DNP L R G P+R+
Sbjct: 160 -GKIATESGDSKWITNEVSRAYVHQLRNQFDVIMVGSETVNHDNPALNCRMSEGRDPIRL 218
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
++ L +P A+++ S AP I+ T A ++Y +G++ VE N+ + Y
Sbjct: 219 IVDGELKIPHNADVFTSSCSAPCIIATTEAA--PLEQYAFFQGLDNVEVWKYNTSRYVPY 276
Query: 341 ---FHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
F D RG+ SIL E GG LA S + + LI ++ APK+IGGK P+P++ L +
Sbjct: 277 EDLFRDIVKRGWNSILLEGGGKLAGSLLQAQLIDEIEFIYAPKLIGGK-GPSPLTGLELP 335
Query: 395 EMSQALDL 402
MS A L
Sbjct: 336 LMSHAFPL 343
>gi|392409526|ref|YP_006446133.1| riboflavin biosynthesis protein RibD [Desulfomonile tiedjei DSM
6799]
gi|390622662|gb|AFM23869.1| riboflavin biosynthesis protein RibD [Desulfomonile tiedjei DSM
6799]
Length = 368
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 195/374 (52%), Gaps = 30/374 (8%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A +A + G TSP+P G +I GKV G+GY A G AEV+A+ A GS RGA
Sbjct: 4 ALKLARRGLGRTSPNPAVGAVI-VKNGKVVGKGYHRAAGEPHAEVEAIRAAGSEARGADL 62
Query: 112 YLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP + HG A+++AGI V GI +P +RG LR GLQV
Sbjct: 63 YVTLEPCNHHGRTPPCCEAILEAGIATVWYGIDDPNPGVRGGGALRLREAGLQV------ 116
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
+ E+A C VN + T PF K AM+LD G+IA SG
Sbjct: 117 -VGNVFEDA---CRRVNEAYLVNITQHRPFVYLKLAMSLD------------GRIATRSG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLTQTLN 288
H+ WI+S+ SR +V LR R A++VG TV DNP LT R G G P+RIV L
Sbjct: 161 HSQWITSEASRRKVHRLRDRVSAIMVGVETVISDNPLLTTRLPDGRGRDPIRIVADSQLR 220
Query: 289 LPEEANLWDVSDAPTIVVTQRGARRKFQKY-LASRGVEVVEF---DILNSRDVMEYFHDR 344
P ++ +++ S +++ +KY L SRG +V+ + ++ +D++ +
Sbjct: 221 TPADSAIFNPSSTAGVIIASSKNPPLDRKYKLESRGAKVLRTCGTERVDLKDMLRRLYLV 280
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E G LA A+ +G++ + F AP IIGGK AP+ V +G+ + +A LID
Sbjct: 281 GITSLLIEGGAGLAWGALEAGVVDRCLFFYAPIIIGGKTAPSGVEGMGINRLEEAPRLID 340
Query: 405 ICYEQVGPDMLISG 418
+ ++GPD+L+ G
Sbjct: 341 VKAYRIGPDILLDG 354
>gi|359411457|ref|ZP_09203922.1| riboflavin biosynthesis protein RibD [Clostridium sp. DL-VIII]
gi|357170341|gb|EHI98515.1| riboflavin biosynthesis protein RibD [Clostridium sp. DL-VIII]
Length = 362
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 198/382 (51%), Gaps = 28/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y+ RA +A G +P+P G +I K+ GEGY G AE AV+
Sbjct: 2 NEKYMERALKLAKMGIGRVNPNPLVGAVIVKDN-KLIGEGYHECYGEAHAERNAVKNATE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP HG V L++ +VV+G+ +P + + G+++ L+ G++
Sbjct: 61 DVEGSTIYVTLEPCAHHGKTPPCVDLLIEKKFKKVVIGMLDPNELVAGKSIEKLKQHGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ + C +N I T+++PF + K M+LD G
Sbjct: 121 V----------IVGVKEEECKKMNEIFIKYITTKIPFVILKSGMSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+SK SR ++R R +++VG NTV D+P LT R +RI++
Sbjct: 159 KIATYSGESKWITSKESRADSQNIRNRVSSIMVGVNTVIADDPELTCRINSEKKLIRIIV 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVME 339
L +P ++ + D TIV T + ++ L GV+V+E N+R ++++
Sbjct: 219 DTNLRIPLDSKVVKNEDKNTIVATSIDSDENKKQLLRGLGVKVIEVASKNNRVDLKELLK 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G S+L E GGTL SA+ ++ KV ++APKI+GG+ + + ++ G ++S+A
Sbjct: 279 KLGEEGIDSVLIEGGGTLNFSALKENIVDKVIFYIAPKILGGEQSKSSIAGQGFSKLSEA 338
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
+ L++I Y +G D++I G+++
Sbjct: 339 VKLMNISYGNIGEDLIIEGYIE 360
>gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
Length = 348
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 189/363 (52%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RGAT Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA SS + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSSSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+RI+L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTLRIPMEANVVTDG 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T K +K L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ DI + QVG D
Sbjct: 280 VNASFIENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|33862648|ref|NP_894208.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Prochlorococcus marinus str. MIT 9313]
gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9313]
Length = 368
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 195/371 (52%), Gaps = 26/371 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++ AG+ RVVV +++P + G + LR GL+V
Sbjct: 74 GGTLLVTLEPC-CHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVI 132
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+L E A + N +HR ++ P+ + K+AM+LD G+
Sbjct: 133 TAVLEL-----EAAHQ-----NRAFVHRVSTGRPWGILKWAMSLD------------GRT 170
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS +R V LRG+ DAV+VGG TVR D+P LT+R P R+VL++
Sbjct: 171 ALPNGASQWISGGEARRWVHRLRGQCDAVIVGGGTVRADDPLLTSRGHSDPEPKRVVLSR 230
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP++A LW+ + A T+V + +L G E++ + ++++ +
Sbjct: 231 SLDLPQQAQLWNTAVAQTLVAHGLEPGHEQLAHL-PEGPELLALPVSEPLELLQALAQQD 289
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LAA+A+ G + ++ VAPK++GG A TP+ +LG+ M + + L
Sbjct: 290 CNRVLWECGPGLAAAALQQGCVQELAVVVAPKLLGGLPARTPLDDLGLTSMKEVVGLASG 349
Query: 406 CYEQVGPDMLI 416
+ +G D L+
Sbjct: 350 SLQSLGADWLL 360
>gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
Length = 360
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 198/364 (54%), Gaps = 30/364 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALTLAEKGWGHTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++VHV
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHV 122
Query: 167 LGEDLQSKIIEE-ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
I+E+ ARK +N + T++ PF + K AM++D GKI
Sbjct: 123 -------GIMEKKARK----LNEIFVKYITTKFPFVIVKSAMSID------------GKI 159
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G++ WI+++ SR +RGR A++VG NTV +DNP LT R G +P+RI++
Sbjct: 160 ACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKSPVRIIVDS 219
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYF 341
+P ++N+ A TI+ T +K L +EV+ N +++M
Sbjct: 220 RGRIPFDSNVIRDKTAKTIIATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+RG S+L E GGTL S G++ KV F++P+IIGGKNA TPV +G ++ +++
Sbjct: 280 GERGIDSVLIEGGGTLNWSLFKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIE 339
Query: 402 LIDI 405
L D+
Sbjct: 340 LKDV 343
>gi|423628480|ref|ZP_17604229.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD154]
gi|401269005|gb|EJR75040.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD154]
Length = 365
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 194/380 (51%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTGARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K + L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ D+ + QVG D G+
Sbjct: 340 IEFKDVSFTQVGKDYRFIGY 359
>gi|374295532|ref|YP_005045723.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clostridium clariflavum DSM 19732]
gi|359825026|gb|AEV67799.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clostridium clariflavum DSM 19732]
Length = 357
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 204/381 (53%), Gaps = 33/381 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ RA ++A G T+P+P G +I +V EG+ A G AEV A + G
Sbjct: 1 MERAIELAKNGWGRTNPNPLVGAVIVKDD-RVIAEGFHEAIGCDHAEVSAFKNAVEDVAG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV- 166
+T Y+N+EP +G A+V+ I +VV+ + +P + G+ V+ L+ G++V V
Sbjct: 60 STLYVNLEPCSHYGRTPPCAKAIVEKKIKKVVIAMIDPNPKVSGKGVQMLKDAGIEVEVG 119
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ ED EARK +N I+ T + PF + K AMTLD GKIA
Sbjct: 120 ILED-------EARK----LNEIFINYVTKKRPFVILKTAMTLD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+S+G + WI+S+ SR V LR R A++VG NTV +DNP LT R G P+RI++
Sbjct: 157 SSTGDSKWITSEESRAYVHILRDRVSAIMVGINTVIKDNPMLTTRLEQKVGSDPVRIIVD 216
Query: 285 QTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVME 339
+P ++ L + S A I+ T + +K L GV V+ E ++ + +M+
Sbjct: 217 SKGIIPMDSKVLCNDSKAGVILATTSRIHEEKEKQLIDNGVTVIKAEGENGCVDLKKLMQ 276
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E GGTL A+A SG++ K F+APKI+GGK+A TPV G+ MS+A
Sbjct: 277 ELYKLEIDSVLLEGGGTLNAAAFESGIVDKAMFFIAPKILGGKDAITPVEGKGIQSMSEA 336
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L L ++ + + G D+L+ G+L
Sbjct: 337 LKLKNVSFSKFGEDILVEGYL 357
>gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 348
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 190/363 (52%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RGAT Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
+G A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 YGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA SS + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSSSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+RI+L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTLRIPMEANVVTDG 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T K +K L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L++K+ +VAPKIIGG+ AP+ V G+ +M A++ DI + QVG D
Sbjct: 280 VNASFIENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
Length = 359
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/372 (33%), Positives = 196/372 (52%), Gaps = 27/372 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A D+A G TSP+P G ++ + G + G G G AEV A+ G RG
Sbjct: 1 MRLALDVAKAGVGQTSPNPAVGAVV-VNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G L++AG+ RVVV +P + G+ + LR G+ V V
Sbjct: 60 ATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEV- 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ EEA + +N H ++ PF KYA +LD GKIA
Sbjct: 119 -----GILKEEADE----LNRMFFHYIATKTPFVTIKYACSLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIVLTQT 286
++G + WI+S +R+ V LR + DA++VG NTV DNP+LT R G P+R++L
Sbjct: 158 ATGESKWITSSAAREDVHRLRAQHDAILVGVNTVMADNPKLTVRIGQQRKNPLRVILDTN 217
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYFHDR 344
L+ P +A++ +A T ++T G R+ K GV +V ++ R+V+ ++
Sbjct: 218 LHTPLDAHVVVDKEAETWIITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQ 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
S+ E G + S + SG++++V A++APK+IGG+ APTPV LG +++A++L
Sbjct: 278 RITSLFVEGGSRIHDSFLRSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDI 337
Query: 405 ICYEQVGPDMLI 416
E++GPD+ I
Sbjct: 338 RQIEKIGPDIKI 349
>gi|386389505|ref|ZP_10074319.1| riboflavin biosynthesis protein RibD [Haemophilus
paraphrohaemolyticus HK411]
gi|385695275|gb|EIG25837.1| riboflavin biosynthesis protein RibD [Haemophilus
paraphrohaemolyticus HK411]
Length = 361
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA ++A++ G+TSP+P GC+I + GK+ EGY G AE A+ +
Sbjct: 3 DIKYMQRAINLAERGRGWTSPNPLVGCVIVKN-GKIVAEGYHEKIGGWHAERNAILNSNA 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP CH T + L++ GI +V +G R+P + G+ V+ LR+ G+
Sbjct: 62 DITGATAYVTLEPC-CHHGRTPPCSNLLIERGIKKVFIGSRDPNPLVSGKGVKQLRTAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ED R+ C +N H ++ P+ + KYAMT D
Sbjct: 121 EVV---EDFM-------REECDKLNPIFFHYIQTKRPYVLLKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S+G + WI+ +T+R +V + R + A++VG TV DNP L +R P+R+V
Sbjct: 159 GKIATSTGESKWITGETARAKVQETRHQYSAIMVGVETVLADNPMLNSRIPNARQPVRVV 218
Query: 283 LTQTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L P + L ++ T++ T +K ++Y GVEV+ N + D+
Sbjct: 219 CDSQLRTPLDCQLVQTANEYRTVIATVCEDLQKIEQY-RPLGVEVLVCKAKNKQVDLDDL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++S
Sbjct: 278 LQKLGEMQIDSLLIEGGSSLNFSALESGVVNRVHCYIAPKLVGGKQAKTPIGGEGIGDLS 337
Query: 398 QALDLIDICYEQVGPDMLI 416
QA+ L I E VG D+LI
Sbjct: 338 QAVKLKLISVEMVGEDILI 356
>gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
2782]
gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
2782]
Length = 367
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +I+ G T+P+P G +I G++ EG+ A G AEV A + S
Sbjct: 7 YMKRAFEISKGGWGRTNPNPLVGAVIVKD-GEIISEGFHEALGGAHAEVCAFQNATSDIS 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+N+EP +G A+ ++GI VVV + +P + G+ ++ L+ + V V
Sbjct: 66 GATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANINVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEAR+ +N IH T ++PF + K AMTLD GKIA
Sbjct: 126 ------GVLEEEARR----LNEIFIHYITKQLPFVIMKTAMTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+ +G + WISS+ SR+ V +R R +++VG NT+ +DNP LTAR G G P+RIV+
Sbjct: 164 SVTGDSRWISSEPSREYVHKIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVD 223
Query: 285 QTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVME 339
+P ++ + + S+A I+ T + + L SRGV +++ +N ++M
Sbjct: 224 SRGRIPMDSRVINGDSNAGLILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMR 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E GG L SA+ +G+++KV FV+PKIIGG +A TPV G+ EM A
Sbjct: 284 ELYKLEIDSVLLEGGGNLNFSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDA 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ L DI E D+LI G++
Sbjct: 344 IALSDIRVEGFDRDVLIEGYI 364
>gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL2A]
gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL2A]
Length = 364
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 190/371 (51%), Gaps = 30/371 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RR+ +A + G TSP+P G ++ S G++ GEG+ G AE++A+ G
Sbjct: 14 WMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHAEIEALAQAGKKAL 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV- 164
T + +EP CH T A+++AG+ +VVVG+ +P + G + L+ GL+V
Sbjct: 74 DGTIVVTLEPC-CHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVI 132
Query: 165 -HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
VL ++ +S +N R P+ + K+AM+LD G
Sbjct: 133 EGVLSQECES------------INREFSFRVRHGRPWGILKWAMSLD------------G 168
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KI +G + WI+ +R V +R + DAV+VGG TVR DNP LT+R P+R+V
Sbjct: 169 KIGLPNGCSKWITDIPARHSVHRIRSKCDAVIVGGGTVRADNPLLTSREKLDFEPLRVVF 228
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
++TLNLP+ A LWD A TI+ F L + G E + + N +++
Sbjct: 229 SKTLNLPQSAKLWDTKIARTIIAYGPEGDESFFSDLPN-GPEKLRLNSNNPSELLSSLAK 287
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+G ILWECG LA SAI + + ++ FVAPK++GG ++ +P++ G +S + L
Sbjct: 288 KGCNKILWECGPQLATSAIEANCVQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQ 347
Query: 404 DICYEQVGPDM 414
++ G D+
Sbjct: 348 HSFLDRKGEDI 358
>gi|124026389|ref|YP_001015504.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL1A]
gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL1A]
Length = 350
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 189/368 (51%), Gaps = 26/368 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RR+ +A + G TSP+P G ++ S G++ GEG+ G AE++A+ G
Sbjct: 1 MRRSIQLALLAEGRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLD 60
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
T + +EP CH T A+++AG+ +VVVG+ +P + G + L+ GL+V
Sbjct: 61 GTIVVTLEPC-CHQGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEV-- 117
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ + +E C +N R P+ + K+AM+LD GKI
Sbjct: 118 ----IEGVLSQE----CESINREFSFRVRHGRPWGILKWAMSLD------------GKIG 157
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ +RD V +R + DAV+VGG TVR DNP LT+R P+R+V ++T
Sbjct: 158 LPNGCSKWITDIPARDSVHRIRSKCDAVIVGGGTVRADNPLLTSRGKSDFEPLRVVFSRT 217
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
LNLP+ A LWD A T+V F L G E + + N +++ +G
Sbjct: 218 LNLPQSAKLWDTKIARTLVAYGPEGDESFFSDLLD-GPEKLRLNSDNPSELLSSLAKKGC 276
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
ILWECG LA SAI + + ++ FVAPK++GG ++ +P++ G +S + L
Sbjct: 277 NKILWECGPQLATSAIEANCVQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSF 336
Query: 407 YEQVGPDM 414
++ G D+
Sbjct: 337 LDRKGEDI 344
>gi|451818187|ref|YP_007454388.1| riboflavin biosynthesis protein RibD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784166|gb|AGF55134.1| riboflavin biosynthesis protein RibD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 362
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 204/382 (53%), Gaps = 28/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A K G +P+P G +I ++ GEGY G AE A++
Sbjct: 2 DEKYMDRALELAKKGIGRVNPNPLVGAVIVKDN-EIIGEGYHECYGMAHAERNAIKNAVR 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G V L++ +VV+G+ +P + + G+++ L+ G++
Sbjct: 61 DVVGSTIYVTLEPCAHYGKTPPCVDLLIEKRFKKVVIGMLDPNELVAGKSIEKLKQHGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G I EE C +N I TS++PF V K M++D G
Sbjct: 121 V-VVG------IREE---ECKKLNEIFIKYITSKLPFVVLKSGMSID------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+SK SR+ LR R +++VG NT+ D+P LT R +RI++
Sbjct: 159 KIATYNGESKWITSKESREDSQKLRNRLHSIMVGINTIITDDPELTCRINKDKNLIRIIV 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFH 342
L + E+ + SD TI+ T A ++ L G++++E N++ D+ E +
Sbjct: 219 DTKLRISLESKVILNSDKKTIIATTINADGNKKQKLRELGMKIIEVPSKNNKVDLKELIN 278
Query: 343 ---DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G SIL E GGTL SA+ G++ KV ++APKI+GG N+ + +S G ++S+A
Sbjct: 279 KLGQEGIDSILIEGGGTLNFSALEEGIVDKVVFYIAPKILGGTNSKSSISGKGFSKLSEA 338
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
++LID+ Y VG D+++ G+++
Sbjct: 339 VNLIDMRYRTVGKDLVVEGYVE 360
>gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
Length = 367
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGESHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831]
gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase :
5-amino-6-(5-phosphoribosylamino) uracil reductase)
[Oceanobacillus iheyensis HTE831]
Length = 367
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 198/380 (52%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A + A G T P+P G +I ++ G G G AE+ A++ G
Sbjct: 3 DDKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHN-RIVGVGSHLKAGEPHAEIHALQMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP G + ALV+AG+ RVV+ +P + G V+ L G+
Sbjct: 62 ENAKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E+ S V I T + PF K A TLD
Sbjct: 122 EVEV-------GVLEDESISMNEVFNKFI---THKQPFITMKAASTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK+A + H+ WI+S+ +R+ V LR A++VG T+ D+P LT R G P+RIV
Sbjct: 160 GKVATKTNHSKWITSEAAREDVHHLRNEHAAILVGIQTIIHDDPALTTRIPNGRNPIRIV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF---DILNSRDVME 339
L +L +P +A + APT++ T+ +K + L S GVE++ + + +DV+
Sbjct: 220 LDSSLRIPLDAQIIQDKRAPTMIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVN 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ ++ S+L E GG + AS +++GL+ KV ++APK+ GGKNAPT G+ +M +
Sbjct: 280 HLGNQQISSLLLEGGGNIHASFLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDS 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
+DL+++ +Q+GPD G+
Sbjct: 340 IDLLNLKIDQIGPDFRFIGY 359
>gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
15579]
gi|187772177|gb|EDU35979.1| riboflavin biosynthesis protein RibD [Clostridium sporogenes ATCC
15579]
Length = 364
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 195/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A K G +P+P G ++ K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKALKLAKKGEGKVNPNPKVGAIVIKDN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G A+V+AGI + V+ +++P ++G+ + L+ G++V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 124 -----VTDIMEKESKE---LNEVFIKYITKKEPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
G + WI+ + SR RV +R ++VG T+ +DNP LT R G +P I++
Sbjct: 164 TKKGESKWITGEESRYRVHQIRNDLSGIMVGIGTIIKDNPLLTTRIEEGRSPKAIIVDSN 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKY--LASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + +A +I + + K L + GV+++EF+ + +M+
Sbjct: 224 LRIPLESKILETINARSIYIATTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y + SIL E G TL SA+ G++ KV F+APKIIGG+++ T + G+ +
Sbjct: 284 YLGEEEIDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIIGGQDSKTMIGGTGVDNLKDM 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L ++ +E++G D+LI G++
Sbjct: 344 FKLQNLNFEKIGEDILIEGYI 364
>gi|333895882|ref|YP_004469756.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111147|gb|AEF16084.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 360
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 200/380 (52%), Gaps = 30/380 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A G T+P+P G +I G++ GEGY G AE+ A++
Sbjct: 4 YMKRALQLAKLGVGHTNPNPLVGAVI-IKDGRIIGEGYHEYYGGPHAEINALKNAKEDVN 62
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GAT Y+ +EP CH T V A++++GI V + + +P + + G+ ++ L GL V+
Sbjct: 63 GATLYVTLEPC-CHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVY 121
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ +EA K +N I TSR P+ + K AMT+D GKI
Sbjct: 122 ------TGLLKDEAEK----LNEVFIKYITSREPYVILKSAMTID------------GKI 159
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
+ +G + WI+++ SR+ V +RG A++VG NTV +DNP LT R G P+R+++
Sbjct: 160 STFTGDSKWITNEKSREYVHKVRGSVMAIMVGINTVIKDNPHLTVRLQGYKNPLRVIVDS 219
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYF 341
+P +AN+ A T++ T K L GV+VV + +++ ++
Sbjct: 220 HGRIPLDANVIIDKSAKTLIATTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+RG SIL E GGTL SA+ G++ KV ++APKIIGG N+ TPV G+ + A+
Sbjct: 280 GERGIDSILIEGGGTLNYSALKEGIVDKVMFYIAPKIIGGSNSLTPVEGDGIALIKDAIM 339
Query: 402 LIDICYEQVGPDMLISGFLQ 421
+ I ++ D+LI G+++
Sbjct: 340 IEKIDIKKFDDDILIEGYIK 359
>gi|423425451|ref|ZP_17402482.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-2]
gi|423436850|ref|ZP_17413831.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X12-1]
gi|423503948|ref|ZP_17480540.1| riboflavin biosynthesis protein RibD [Bacillus cereus HD73]
gi|449090304|ref|YP_007422745.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|401111942|gb|EJQ19823.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-2]
gi|401122586|gb|EJQ30373.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X12-1]
gi|402458061|gb|EJV89814.1| riboflavin biosynthesis protein RibD [Bacillus cereus HD73]
gi|449024061|gb|AGE79224.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 367
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|365159928|ref|ZP_09356103.1| riboflavin biosynthesis protein RibD [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624459|gb|EHL75531.1| riboflavin biosynthesis protein RibD [Bacillus sp. 7_6_55CFAA_CT2]
Length = 367
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|392940042|ref|ZP_10305686.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
siderophilus SR4]
gi|392291792|gb|EIW00236.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
siderophilus SR4]
Length = 360
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 195/360 (54%), Gaps = 28/360 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A+K G+T+P+P G +I + GK+ GEGY G AEV A++ +
Sbjct: 4 YMKRALKLAEKGWGYTNPNPLVGAVIVKN-GKIIGEGYHEYFGGPHAEVNALKNAVEDVK 62
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T ++ +EP +G V ++++GI RV + + +P + G ++ L+ G++V V
Sbjct: 63 GSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVQV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EARK +N + T+++PF + K AM++D GKIA
Sbjct: 123 ------GMMEKEARK----LNEIFVKYITTKIPFVILKSAMSID------------GKIA 160
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G++ WI+++ SR +RGR A++VG NTV +DNP LT R G +P+RI++
Sbjct: 161 CYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTVIKDNPMLTTRLEGYKSPVRIIVDSR 220
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYFH 342
P +N+ A TI+ T +K L +EV+ N +++M
Sbjct: 221 GRTPLASNVIRDKAAKTIIATTELMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+RG S+L E GGTL SA+ G++ KV F++P+I+GG+NA TPV +G + +++L
Sbjct: 281 ERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISPRIVGGENALTPVEGIGFSNIENSIEL 340
>gi|345856626|ref|ZP_08809101.1| riboflavin biosynthesis protein RibD [Desulfosporosinus sp. OT]
gi|344330301|gb|EGW41604.1| riboflavin biosynthesis protein RibD [Desulfosporosinus sp. OT]
Length = 382
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 212/400 (53%), Gaps = 30/400 (7%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S ED ++RRA ++A K+ G TSP+P GC+I +V GEGY GT AEV A+
Sbjct: 7 SAPEDEKFMRRALELAVKAIGRTSPNPLVGCVIVKDN-QVVGEGYHLKAGTPHAEVHALA 65
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
A G GAT Y+ +EP G AL++A + RVVV +++P + G+ + LR
Sbjct: 66 AAGDQAHGATVYVTLEPCSHFGRTPPCADALIRAEVKRVVVAMKDPNPLVSGRGIDRLRE 125
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V + + +EA L +N I S +PF V+K AMTLD
Sbjct: 126 AGIKVDI------GLLFQEA----LTINEVFIKVIASGLPFVVYKTAMTLD--------- 166
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + W+S + SR V LR R D ++ G TV +DNP LT R G P+
Sbjct: 167 ---GKIATETGDSRWVSQEKSRQYVHQLRDRYDVIMAGSETVIQDNPALTCRLPDGRDPV 223
Query: 280 RIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLAS-RGVEVVEFDI---LNS 334
R+++ L + E+A+ L+ +P I+ T + A YL S VEV ++D +
Sbjct: 224 RLIVDGQLRISEKAHVLFASQHSPCIIATSQAASADKVAYLKSLEQVEVWQYDTPRHVPL 283
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++ DRG+ S+L E GG LA + I + KV F+APK++GG N P+P+S L +
Sbjct: 284 EKLLRDLVDRGWTSVLLEGGGGLAGALIKEQCVDKVEFFIAPKLVGG-NGPSPLSGLHIQ 342
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSED 434
+M+ AL+L D+ + D+ ++G++ + P + + +
Sbjct: 343 QMADALELHDLHVDINSGDLHVTGYISEVRSQKPEVSNRN 382
>gi|423616393|ref|ZP_17592227.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD115]
gi|401258209|gb|EJR64395.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD115]
Length = 367
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI RVVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCFHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIKMLQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L+ + PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYILI----------KRPFVTIKSGITLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARREVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ + PT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEVPTWIFTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + LI K+ ++APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLIDKLILYIAPKIIGGRMAPSFVEGAGIAKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
Length = 358
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 193/375 (51%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQVRG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 ATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+L TL
Sbjct: 158 SSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T K + L + GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
+ + QVG D G+
Sbjct: 338 VSFTQVGKDYRFIGY 352
>gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
QYMF]
gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
QYMF]
Length = 366
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 202/381 (53%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R+A ++A K G T+P+P G +I + KV GEGY + G AEV A +
Sbjct: 5 YMRKAIELAKKGTGHTNPNPLVGAVIVKNN-KVIGEGYHHYYGGPHAEVDAFNNATEDVK 63
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G A+V+ GI +VV+ +R+P + G + LR G++V
Sbjct: 64 GATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIEV-- 121
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ E L+S EA+ +N + T+ +PF + K AMTLD GKIA
Sbjct: 122 ISEVLES----EAKN----LNEIFVKYITTEMPFCILKTAMTLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
++G + WI+++ SR V ++R + +++VG TV D+P+LT R + G P+R+++
Sbjct: 162 TATGDSKWITNEESRQYVHEIRHQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVD 221
Query: 285 QTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVME 339
P A + +S TI+ T A K L +G EV+ + N+ + +++
Sbjct: 222 TEAKTPLWAQVLQLSSKVRTIIATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQ 281
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E G TL SA+ G++ KV +F+APKI+GG A TPV G+ M A
Sbjct: 282 QLGAKGIDSVLIEGGATLNDSALQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDA 341
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ L DI + G D++I G+L
Sbjct: 342 IQLTDIQVRKFGQDIMIEGYL 362
>gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
Length = 367
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|423412878|ref|ZP_17389998.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3O-2]
gi|423431337|ref|ZP_17408341.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4O-1]
gi|401102438|gb|EJQ10424.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3O-2]
gi|401118362|gb|EJQ26194.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4O-1]
Length = 367
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSGSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|387773972|ref|ZP_10129252.1| riboflavin biosynthesis protein RibD [Haemophilus parahaemolyticus
HK385]
gi|386903059|gb|EIJ67879.1| riboflavin biosynthesis protein RibD [Haemophilus parahaemolyticus
HK385]
Length = 361
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y++RA +A++ G+TSP+P GC+I + GK+ EGY G AE A+ +
Sbjct: 3 DANYMQRAISLAEQGRGWTSPNPLVGCVIVKN-GKIVAEGYHEKIGGWHAERNAILNSDT 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G R+P + G+ + LR+ G++
Sbjct: 62 DLSGATAYVTLEPCCHHGRTPPCSDLLIEHGIKKVFIGSRDPNPLVSGKGAKQLRAAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ED R+ C +N H ++ P+ + KYAMT D G
Sbjct: 122 VV---EDFM-------REECDKLNPIFFHYIQTKRPYVLLKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ +T+R +V R + A++VG TV DNP L AR P+RIV
Sbjct: 160 KIATSTGESKWITGETARTKVQQTRHQYSAIMVGVETVLADNPMLNARIPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K ++Y GV+V+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVCEDLQKIEQY-RPLGVDVMVCKARNKRVDLDDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G L SA+ SG++++V ++APK++GGK A TP+ G+ ++SQ
Sbjct: 279 QKLGEMQIDSLLIEGGSILNFSALESGVVNRVHCYIAPKLVGGKQAKTPIGGEGIGDLSQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L + E VG D+LI
Sbjct: 339 AVKLKLVSMEMVGEDILI 356
>gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
Eklund 17B]
gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
Eklund 17B]
Length = 378
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 201/384 (52%), Gaps = 28/384 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y+ A ++A K G +P+P G +I ++ G GY G AEV A+
Sbjct: 17 NEEYMDLALELAKKGIGKVNPNPLVGAVIVKDN-EIIGTGYHEYYGGAHAEVDAINNTTK 75
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G V+ +++ I +VV+G+ +P + G++V+ L+ ++
Sbjct: 76 SLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKENDIE 135
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G +EE + C +N I TS +PF + K A++LD G
Sbjct: 136 V-IVG-------VEEEK--CKKLNESFIKYITSNLPFVILKSAISLD------------G 173
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S G + WI+SK +R LR + A++VG NT+ +DNP LT R G P+RIV+
Sbjct: 174 KIATSIGESKWITSKEARIDGHLLRNKLSAIMVGVNTIIKDNPELTCRIENGRNPIRIVV 233
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVME 339
TL +P + + D TI+ T + A + ++ L R V V+E N +++M
Sbjct: 234 DSTLRIPLSSKVIKNYDGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMR 293
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y SIL E GGTL SA+ ++ KV ++APKI+GG+ + + + G ++S A
Sbjct: 294 YLGTLKIDSILIEGGGTLNFSALEENIVDKVRFYIAPKILGGETSKSSIGGQGFSKLSDA 353
Query: 400 LDLIDICYEQVGPDMLISGFLQPI 423
+ L D+ YE++ +++I G++ +
Sbjct: 354 VKLKDLTYEKLSEEIVIEGYINKL 377
>gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 360
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 199/382 (52%), Gaps = 29/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA ++A K G +P+P G +I KV GEG+ G AE AV+
Sbjct: 2 DEFYMKRALELAIKGVGMVNPNPMVGAVIVKDN-KVIGEGFHEKYGHAHAERNAVKNAVE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G V L++ + +VV+G+ +P + G++++ L+ ++
Sbjct: 61 DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ K C +N I T++ PF + K +++D G
Sbjct: 121 VKVGVKE----------KECRKLNEVFIKYITTKKPFVIMKAGISID------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA S G + WI+S+ SR +LR R ++VG NTV D+P LT R G P+RI+
Sbjct: 159 KIATSGGESKWITSERSRLHSHELRNRMSGIMVGINTVLSDDPSLTYRGEHKGKDPLRII 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVM 338
+ TL +P E+ + ++ TIV A ++ L GV+V+E ++ ++V+
Sbjct: 219 IDSTLKVPFESKVIKYNNNNTIVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVV 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E SIL E GGTL SA+ G++ KV ++APKIIGG+N+ VS G +
Sbjct: 279 ERLGKDKIDSILLEGGGTLNFSALKEGIVDKVRFYIAPKIIGGQNSKNSVSGQGFYNLDD 338
Query: 399 ALDLIDICYEQVGPDMLISGFL 420
++L D+ YEQ+G ++++ G++
Sbjct: 339 CVNLKDMSYEQMGNEIVVEGYI 360
>gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
Length = 348
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 188/363 (51%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RGAT Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA SS + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSSSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+RI+L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTLRIPMEANVVTDG 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T K + L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ D+ + QVG D
Sbjct: 280 VNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
NCIMB 8052]
gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
NCIMB 8052]
Length = 361
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 204/381 (53%), Gaps = 28/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A + G +P+P G +I ++ GEGY G AE AV+
Sbjct: 2 DEKYMEIALELAKRGIGKVNPNPLVGAVIVKDN-EIIGEGYHECYGEAHAERNAVKNATK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+T Y+ +EP +G V +++ RVV+G+ +P + + G++V L+ G++
Sbjct: 61 SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G I+E K C +N I TS++PF + K M++D G
Sbjct: 121 V-VVG-------IKE--KECKELNEIFIKYITSKIPFVILKSGMSID------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+SK SR+ LR R +++VG NTV DNP LT R G +RI++
Sbjct: 159 KIATYSGQSKWITSKESREDSQHLRNRFHSIMVGVNTVIEDNPELTCRINDGKKLIRIIV 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVME 339
L +P E+ + SD IVVT + ++ +K L S G++V+E + +N +++++
Sbjct: 219 DSNLRIPLESKVLTNSDKAAIVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVK 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G SIL E GGTL SA+ ++ KV ++APKIIGG+++ ++ G ++ A
Sbjct: 279 RVGEEGIDSILIEGGGTLNFSALEERIVDKVRFYIAPKIIGGQSSRNSIAGKGFFKLDDA 338
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ L DI Y +G D+++ G++
Sbjct: 339 VRLEDINYRTIGEDLVLEGYV 359
>gi|407705762|ref|YP_006829347.1| periplasmic binding protein [Bacillus thuringiensis MC28]
gi|407383447|gb|AFU13948.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis MC28]
Length = 367
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI RV+V +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKRVIVATLDPNPIVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E ++ ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIM----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G +RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNSIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAEKKKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555]
gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016]
gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555]
gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 369
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 204/386 (52%), Gaps = 31/386 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A ++A K GF +P+P G L+ G + G GY G AEV A++ G
Sbjct: 6 KDEHYMEIALELASKGEGFVNPNPQVGALVVKE-GNIVGRGYHKFYGGPHAEVYALKEAG 64
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G Y+ +EP +G V A+V+AGI +VVV +++P + G+ + LR++G+
Sbjct: 65 DKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLRNKGI 124
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + ++E K L +N I + ++PF + K A+TLD
Sbjct: 125 EV-------VTGVLE---KEALNINEIFIKYISDKLPFVILKSAVTLD------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GKIA +G + WI+ + SR+ V +R R A+ VG T+ DNP LT R +P+ +
Sbjct: 163 GKIATVTGQSKWITCEESRNFVHHIRNRVMAIAVGIGTILSDNPLLTTRLEKKCKSPIAV 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKY-LASRGVEVV-----EFDILNSR 335
VL L +P + ++D I++ + +KY + GV+V+ E +N +
Sbjct: 223 VLDSKLRIPLDCKIFDTLKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLK 282
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++E + G S+ E GG+L SA+SSG++ KV F+APKIIGG A T V G+ +
Sbjct: 283 ILIEKLGNIGIDSLFIEGGGSLNFSALSSGIVDKVIYFIAPKIIGGLEAKTSVEGKGIED 342
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+++A+ L +I Y + G DM+I G+++
Sbjct: 343 LNKAVKLKNISYLKSGEDMMIQGYVE 368
>gi|375086303|ref|ZP_09732719.1| riboflavin biosynthesis protein RibD [Megamonas funiformis YIT
11815]
gi|374565708|gb|EHR36971.1| riboflavin biosynthesis protein RibD [Megamonas funiformis YIT
11815]
Length = 375
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 194/380 (51%), Gaps = 29/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A + G TSP+P G +I +V G G+ GT AEV A+ G
Sbjct: 12 DEKYMRLAMQLAGNAIGRTSPNPLVGAVIVKDN-RVVGCGWHRKAGTPHAEVHALNQAGE 70
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G ALV+A + V G+ + + G+ + L G
Sbjct: 71 LAQGADVYVTLEPCAHYGKTPPCAKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAG-- 128
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
+HV LQ +E RK N + PF V K AMTLD G
Sbjct: 129 IHVEYGFLQ----DELRKQ----NEVFFKWIEHKKPFVVLKAAMTLD------------G 168
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA ++G + WI+++TSR + LR D ++VG NTV DNP LTAR GG P+RIV+
Sbjct: 169 KIATATGQSKWITNETSRAYGYKLRDIYDGIMVGINTVIEDNPMLTARVDGGKNPIRIVV 228
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDVM 338
+L + AN+ A TIV T A + L ++ V+V+ E D ++ ++
Sbjct: 229 DSSLKIDINANVVQDKSAKTIVATTDKADKDKILKLQAQNVDVIVVDKDENDKVDIEKLL 288
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ SIL E G TL+ S ++ L+ KV+ F+APKI+GGK A TPV+ G++ + +
Sbjct: 289 NILGQQNICSILVEGGATLSGSFVAKKLVDKVYFFIAPKIVGGKEAKTPVAGTGILNLQE 348
Query: 399 ALDLIDICYEQVGPDMLISG 418
AL L DI E++ D+LI G
Sbjct: 349 ALALKDIQIEKLEEDILIIG 368
>gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 367
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 196/382 (51%), Gaps = 28/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y+R A +A+ + G TSP+P G LI G VA G+ A G AE+ A+ G
Sbjct: 5 DESYMREALHLAEFARGRTSPNPLVGALI-VRDGIVAASGWHRAAGEPHAEIHALRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP G A++ AGITRVVV +R+P + G+ + L + G++
Sbjct: 64 LARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + EAR+ NA + T++ P K AMTLD G
Sbjct: 124 V------VTGVCAAEARRQ----NAAFLTWVTTKRPLVTLKTAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA+ +G + WI+ + +R RV ++R SDA++VG TV D+P LT R H G P+R+
Sbjct: 162 KIASHTGASRWITGEEARLRVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRV 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVME 339
VL P +A L APT++ A + L + G EVV + + +++
Sbjct: 222 VLDSAARTPHDARLVTDGAAPTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLD 281
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E G + S +S G + ++ AF+AP ++GG APTPV +G +A
Sbjct: 282 WLGAHDCTSLLVEGGAAVNWSFLSGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEA 341
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
L L D+ EQVG D+L++G L
Sbjct: 342 LHLHDMHVEQVGADLLVTGSLH 363
>gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar
anthracis str. CI]
gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar
anthracis str. CI]
Length = 367
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFITIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGICSLLIEGGGEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
Length = 348
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 188/363 (51%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RGAT Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA SS + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSSSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+RI+L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTLRIPMEANVVTDG 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T K + L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ D+ + QVG D
Sbjct: 280 VNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|399925319|ref|ZP_10782677.1| riboflavin biosynthesis protein RibD [Peptoniphilus rhinitidis
1-13]
Length = 371
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 196/385 (50%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG-- 102
D+ Y+ RA ++A K G T +P GC+I K+ GEG G AE+ A+E
Sbjct: 8 DSFYMERAIELAKKGIGNTKTNPLVGCVIVKDE-KIIGEGAHLKFGENHAEINAIEDAKN 66
Query: 103 -GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G GAT Y+N+EP G + +V+ GI RVV+G +P + + G ++ L
Sbjct: 67 RGEDVSGATLYVNLEPCSHFGKTPPCANRIVEEGIKRVVIGTADPFEKVSGNGIKILEDA 126
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+++ ED+ S+ CL++N ++ PF V K M++D
Sbjct: 127 GIEIT---EDVCSE-------ECLILNERFFTYVKNKRPFVVLKAGMSID---------- 166
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPM 279
GKIA SG + WI+S+ SR +LRG+ DA++VG TV DNP L RHG + P+
Sbjct: 167 --GKIATESGESKWITSEFSRSYSHELRGKLDAIMVGIGTVLSDNPTLNVRHGKYKNNPI 224
Query: 280 RIVLTQTLNLPEEANLW--DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-- 335
RIV L +P E+NL+ D+ I T+ + K + A + VEV+ N R
Sbjct: 225 RIVTDSKLRIPIESNLFRDDLDSISIIATTENCDKEKLKVLSAKKNVEVLICKEKNGRVD 284
Query: 336 --DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+M+ + SIL E G TL A + + L+ K + F+AP ++G + P + +L +
Sbjct: 285 LIDLMDKLKEYNISSILLEGGRTLNAEMLKNNLVDKFYFFIAPILLGSQGIPV-IGDLEI 343
Query: 394 VEMSQALDLIDICYEQVGPDMLISG 418
++ ++ + DI E++ D+L++G
Sbjct: 344 DKLKNSIKIKDIKCEKLFDDILVTG 368
>gi|406667030|ref|ZP_11074792.1| Riboflavin biosynthesis protein RibD [Bacillus isronensis B3W22]
gi|405385078|gb|EKB44515.1| Riboflavin biosynthesis protein RibD [Bacillus isronensis B3W22]
Length = 371
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A + G T+P+P G +I G + G G G AEV AV G
Sbjct: 4 DQDYMQLALELAASARGNTNPNPLVGAVIVKD-GVIVGTGLHRKAGEPHAEVHAVNMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ AT Y+ +EP +G + L+ ++G RVVV +P + G+ +R LR G++
Sbjct: 63 HTKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA+K +N IH + PF V K+AMTLD G
Sbjct: 123 VEV------GVLQEEAQK----LNERFIHNMLTERPFVVAKFAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR---HGGGHTPMR 280
KIA +GH+ WI+ + +R V +LR D ++VG TV DNP+LT R G P+R
Sbjct: 161 KIATYNGHSQWITGEEARGDVHELRHEVDGILVGVQTVLNDNPKLTTRLKDDRQGRNPIR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRD 336
+VL TL P +A++ D ++A TI+VT + + + L GVE++ + L+ +D
Sbjct: 221 VVLDSTLKTPVDAHIADTTEARTIIVTSLDSDEEKAQQLERNGVEIIRVEKEKTGLHIKD 280
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV--SELGMV 394
+++ +G +L E GG + AS + G I + ++APK++GGKN+ TP +++ +
Sbjct: 281 MLKALFKKGITHLLVEGGGNVNASFLRGGFIDQYIVYIAPKVLGGKNSITPFTGTDVETI 340
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
+++ L+ ++ + VG D+ I +
Sbjct: 341 DVANQLEFGEVTH--VGEDLRIIAY 363
>gi|359299582|ref|ZP_09185421.1| riboflavin-specific deaminase [Haemophilus [parainfluenzae] CCUG
13788]
Length = 364
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+RRA +A+K G+T+P+P GC+I + G++ +GY G AE A+ +
Sbjct: 3 DAEYMRRAISLAEKGRGWTNPNPLVGCVIVKN-GEIVAQGYHEKIGGWHAERNAILNSQA 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
ATAY+ +EP HG S L++ GI +V +G R+P + G+ + LR+ G++
Sbjct: 62 DLTDATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSRDPNPLVSGKGAKQLRAAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I + R+ C +N H ++ P+ + KYAMT D G
Sbjct: 122 V----------IEDFLREECDQLNPIFFHYIQTKRPYVLLKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ + +R +V + R + A++VG TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGELARAKVQETRHQYRAIMVGVETVLADNPMLNSRMPNARQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + D PTI+ T +K K+ GVEV+ N R D++
Sbjct: 220 DSHLRTPLDCQLVQTAKDYPTIIATISEDLQKIAKF-EPLGVEVLLCKAKNRRVDLSDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++SQ
Sbjct: 279 QKLGEKQIDSLLIEGGASLNFSALESGVVNRVHCYIAPKLVGGKAAKTPIGGEGIGDLSQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+LI
Sbjct: 339 AVKLKMNSIEMIGEDVLI 356
>gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
Length = 354
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 196/370 (52%), Gaps = 27/370 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ G++ GEG+ G AEV A+ G R
Sbjct: 5 WMRRALALAALAEGHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDAAR 64
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G T + +EP HG S A++ AGI RVV+ + +P + G +R LR GL+V
Sbjct: 65 GGTLVVTLEPCCHHGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEV-- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + EEAR+ N +HR + PF V K+AM+LD G+ A
Sbjct: 123 ----ISGVLREEARQQ----NRAFLHRVRTGRPFGVLKWAMSLD------------GRTA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WIS ++RD V LR DAVVVGG TVR D+P LT+R P+R+VL+++
Sbjct: 163 LPNGVSQWISGPSARDWVHRLRSGMDAVVVGGGTVRGDDPLLTSRGRRSPEPLRVVLSRS 222
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
L+LP +A LWD + APT+V G ++ + G E + + +ME RG
Sbjct: 223 LDLPNQAQLWDTALAPTLVA--HGPDADLRRLPS--GPEELGLSACEPQQLMEALAKRGC 278
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+LWECG LAA+AI G + ++ A VAPK++GG A TP+ +L M Q L
Sbjct: 279 NQVLWECGPELAAAAIRQGCVQEIAAVVAPKLMGGMAARTPLGDLNFRAMDQVLQGQWHH 338
Query: 407 YEQVGPDMLI 416
E +G D L+
Sbjct: 339 SEPMGNDWLL 348
>gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 358
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 192/375 (51%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+L TL
Sbjct: 158 SSSDSKWITSTGARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T K + L + GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLVEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
+ + QVG D G+
Sbjct: 338 VSFTQVGKDYRFIGY 352
>gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902]
gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CC9902]
Length = 349
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 193/375 (51%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A + G TSP+P G ++ G + GEG+ G AEV A+ G +G
Sbjct: 1 MRRALALAALADGHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKG 60
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T + +EP HG A+++AGI RVV+ + +P + G + LRS GL+V +
Sbjct: 61 GTLVVTLEPCCHHGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEV--M 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
LQ++ + + R +HR + P+ K+AM LD G+ A
Sbjct: 119 SGVLQAEAVFQNRA--------FLHRVRTGRPWGTLKWAMGLD------------GRNAL 158
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
++G + WIS +R V LR +SDAV+VGG TVR D+P LT+R P+R+VL++++
Sbjct: 159 TNGESQWISGPMARQWVHQLRSKSDAVIVGGGTVRTDDPLLTSRGRRMPEPLRVVLSRSM 218
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
LPE A LWD + APT+V G + + + G + + +M+ +RG
Sbjct: 219 ELPELAQLWDTTLAPTLVA--HGPESQDRPF--PSGPQRLLLSASEPEPLMQELANRGCN 274
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
+LWECG LAA+AI G I V A VAPK++GG A TP+ +LG M Q + +
Sbjct: 275 RVLWECGPELAAAAIRQGCIQDVAAVVAPKLMGGVPARTPLGDLGFTAMDQVVAGSFLSP 334
Query: 408 EQVGPDMLISGFLQP 422
+G D L L P
Sbjct: 335 VPLGDDWLFQFKLTP 349
>gi|423550904|ref|ZP_17527231.1| riboflavin biosynthesis protein RibD [Bacillus cereus ISP3191]
gi|401188237|gb|EJQ95305.1| riboflavin biosynthesis protein RibD [Bacillus cereus ISP3191]
Length = 366
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFITIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV++ +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
DSM 574]
gi|333923266|ref|YP_004496846.1| riboflavin biosynthesis protein RibD [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
DSM 574]
gi|333748827|gb|AEF93934.1| riboflavin biosynthesis protein RibD [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 375
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 203/386 (52%), Gaps = 35/386 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D +++ A ++A K+ G TSP+P G ++ G+V G+G+ GT AEV A+ G
Sbjct: 3 QDKHFMQMALELARKARGRTSPNPMVGAVV-VKDGQVVGQGWHAKAGTAHAEVVALADAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGAT Y+ +EP CH T AL++AG+ RVV + +P + G+ + LR G
Sbjct: 62 EQARGATVYVTLEPC-CHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAG 120
Query: 162 LQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
++V V ++E EAR+ +N I T+ PF V K A +LD
Sbjct: 121 VEVQV-------GVLESEARQ----LNEIFIKYITTGRPFVVLKAATSLD---------- 159
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GKIA ++G + WI+ +R LR DA++VG NT+ D+P LT R G G P
Sbjct: 160 --GKIATATGESKWITGAAARTEGHRLRDIYDAILVGVNTILADDPALTTRLPEGRGKDP 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-- 335
+R+V+ T P A L S A TI+ T A + + L + G EV+ R
Sbjct: 218 IRVVVDSTARTPTSARVLIQQSAAHTIIATTEAAPAERRASLMAAGAEVLVVPGQGPRVD 277
Query: 336 --DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ME R S+L E GG + SA+++G++ KV F+APKIIGG AP PV G+
Sbjct: 278 LVKLMELLGQRQITSVLIEGGGKINGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGAGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLISGF 419
+ ++ A L ++ ++VG D+LI+G+
Sbjct: 338 MSLNDATKLYNVSLQRVGEDILITGY 363
>gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Bacillus cereus E33L]
gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Bacillus cereus E33L]
Length = 367
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E ++ ++ PF K +TLD
Sbjct: 122 EVLVGVCEEKSKKMNEVFNKYIM----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDVEAPTWIFTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + Q+G D G+
Sbjct: 340 IEFKDISFTQIGKDYRFIGY 359
>gi|366166345|ref|ZP_09466100.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Acetivibrio cellulolyticus CD2]
Length = 369
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 205/383 (53%), Gaps = 33/383 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ RA ++A K G T+P+P G +I ++ EG+ G AEV A +
Sbjct: 7 YMSRAIELAKKGWGRTNPNPLVGAVIVKDE-RIIAEGFHEVIGGAHAEVSAFKNAVEDVA 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G T Y+N+EP +G A+++A I +VVV + +P + G+ V+ LR G++V V
Sbjct: 66 GGTLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EA+K +N I+ ++ PF + K AMT+D GKIA
Sbjct: 126 ------GVLEDEAKK----LNEIFINYVVNKKPFVILKTAMTID------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRIVLT 284
+ SG + W++S+ SR V +R R +++VG NT+ +DNP LT R G P+RIV+
Sbjct: 164 SVSGDSKWVTSEASRGYVHIIRDRVASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVD 223
Query: 285 QTLNLPEEANLWDVSDAPTIVV--TQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+PE++ + + SD+ +VV T ++ + YL +GV++++ D + R +
Sbjct: 224 SKGIIPEDSRVLN-SDSKAVVVLATTSNILKEKEMYLIDKGVKIIKADGADGRVDLVKLT 282
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E + SIL E GG L A+A+ +G++ K F+APKI+GGK A TPV G+ MS
Sbjct: 283 EELYKLEIDSILLEGGGNLNAAALEAGIVDKAMFFIAPKILGGKEAVTPVEGRGINLMSD 342
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A+ L D+ + G D+L+ G+ +
Sbjct: 343 AVKLKDVSVSRYGEDILVEGYTE 365
>gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
Nor1]
gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
Nor1]
Length = 379
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 195/367 (53%), Gaps = 29/367 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G +I G + GEG+ + GT AE+ A+ G + AT Y+ +EP
Sbjct: 19 GQTSPNPMVGAVIVKD-GTIVGEGWHHRAGTPHAEIHAINQAGDLAKDATLYVTLEPCSH 77
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
+G V A+VQAGITRVV + +P + GQ + LR G++V ++ + EA
Sbjct: 78 YGRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEV------IEGVLATEA 131
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+ +N I T+++PF + K AM+LD GKIA +GH+ WI+
Sbjct: 132 AQ----LNEVFIKWITTKMPFGILKTAMSLD------------GKIATYTGHSRWITGLP 175
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLTQTLNLPEEANLWDV 298
+R RV + R + DA++VG TV DNP LTAR G P+RIV P A +
Sbjct: 176 ARTRVHEWRSKYDAILVGVGTVVADNPELTARLIPNGKNPLRIVADSLARTPLNAKIVTD 235
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYFHDRGYLSILWECG 354
APTI+ A L + G EV++ D ++ R + Y R S++ E G
Sbjct: 236 GKAPTIIAVTPEAPSDRIAALKASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGG 295
Query: 355 GTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDM 414
G L ASA+++ ++ KV+ F+APKIIGG++AP P+ +G + QA++L + E VG D
Sbjct: 296 GALGASALAANVVDKVYWFIAPKIIGGRSAPGPIGGMGAEYLEQAVELENTAIECVGEDF 355
Query: 415 LISGFLQ 421
L++ +++
Sbjct: 356 LVTAYIK 362
>gi|333978683|ref|YP_004516628.1| riboflavin biosynthesis protein RibD [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333822164|gb|AEG14827.1| riboflavin biosynthesis protein RibD [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 391
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 204/399 (51%), Gaps = 45/399 (11%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
F RA D Y++ A D+A ++ G TSP+P G ++ G+V G GY GT AE+
Sbjct: 17 FVLQVRALDEYYMQMALDLARRALGRTSPNPMVGAVLVKD-GQVIGRGYHARAGTPHAEI 75
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAV 154
A+ G GAT Y+ +EP CH T A++ AG+ RVV + +P + G+ +
Sbjct: 76 HALNEAGEQAAGATLYVTLEPC-CHRGRTGPCTEAILDAGVKRVVAAMTDPNPLVAGRGL 134
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
LR G++V V + EEARK +N + T+R PF V K AM+LD
Sbjct: 135 ERLRQAGVEVTV------GVMEEEARK----LNEVFVKYITTRRPFVVLKAAMSLD---- 180
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
GKIA +G + WI+ +R V LR R DA++VG NTV +DNP LT R G
Sbjct: 181 --------GKIATRTGESRWITGPRARLAVHRLRDRYDAILVGVNTVLKDNPSLTTRISG 232
Query: 275 --GHTPMRIVLTQTLNLPEEAN-LWDVSDAPTIV-VTQRGARRKFQKYLASRGVEV---- 326
G P+RI++ P +A + S APTIV VT+R + ++ L G +V
Sbjct: 233 ENGKDPVRIIVDSLARTPPDARVITQQSPAPTIVAVTERAPVQNLRR-LEEAGAQVLVVP 291
Query: 327 -----VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
V+ ++L M+ R S+L E GG + AS + S L+ KV F++P IIGG
Sbjct: 292 GPGLRVDLEVL-----MKELARREITSVLVEGGGEIHASFLKSRLVDKVVWFISPLIIGG 346
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+ AP PV G +++A+ L D+ + G D + G++
Sbjct: 347 RQAPGPVGGEGPARLAEAVRLKDVSLTRYGGDFCVEGYV 385
>gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
Length = 360
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++L TL
Sbjct: 158 SLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T + +K L + GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDREAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + Q+G D G+
Sbjct: 338 ISFTQIGKDYRFIGY 352
>gi|402304289|ref|ZP_10823359.1| riboflavin biosynthesis protein RibD [Haemophilus sputorum HK 2154]
gi|400377877|gb|EJP30742.1| riboflavin biosynthesis protein RibD [Haemophilus sputorum HK 2154]
Length = 364
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 200/378 (52%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+RRA +A+K G+T+P+P GC+I + G++ +GY G AE A+ +
Sbjct: 3 DAEYMRRAISLAEKGRGWTNPNPLVGCVIVKN-GEIVAQGYHEKIGGWHAERNAILNSQA 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
ATAY+ +EP HG S L++ GI +V +G ++P + G+ + LR+ G++
Sbjct: 62 DLTDATAYVTLEPCCHHGRTPPCSDLLIELGIKKVFIGSQDPNPLVSGKGAKQLRAAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I + R+ C +N H ++ P+ + KYAMT D G
Sbjct: 122 V----------IEDFLREECDQLNPIFFHYIQTKRPYVLLKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ + +R +V + R + A++VG TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGELARAKVQETRHQYRAIMVGVETVLADNPMLNSRMPNARQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + D PTI+ T +K K+ GVEV+ N R D++
Sbjct: 220 DSHLRTPLDCQLVQTAKDYPTIIATISDNLQKIAKF-EPLGVEVLLCKAKNRRVDLLDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ S+L E G +L SA+ SG++++V ++APK++GG+ A TP+ G+ ++SQ
Sbjct: 279 QKLGEKQIDSLLIEGGASLNFSALESGVVNRVHCYIAPKLVGGRIAKTPIGGEGISDLSQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E VG D+LI
Sbjct: 339 AVKLKMNSIEMVGEDVLI 356
>gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
137 str. F0430]
Length = 386
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 192/385 (49%), Gaps = 28/385 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
RA D ++ A +A+ + G TSP+P G +I G V G G+ A G AE+ A+
Sbjct: 22 RARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRD-GIVVGSGWHRAAGEPHAEIHALRM 80
Query: 102 GGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGAT Y+ +EP HG A++ AGI RVV + +P + G + LR+
Sbjct: 81 AGELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAA 140
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + EEAR+ N + ++ PF K AMTLD
Sbjct: 141 GIEV------TTGVLSEEARRQ----NEVFLKWVVTKRPFVTLKTAMTLD---------- 180
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GK A+ +G + WI+ +R RV + R DA++VG TV DNP LT R H G P
Sbjct: 181 --GKTASRTGASQWITGAEARMRVHEWRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNP 238
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRD 336
+R+VL T P +A L A TI+ A K L + G EVV F + ++
Sbjct: 239 VRVVLDSTARTPHDAKLLTDGAARTIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPA 298
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M++ S+ E G ++ S +S+GL+ KV AF+AP ++GG +APT V G
Sbjct: 299 LMDFLGREELTSVFVEGGASVHWSFLSAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESP 358
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L D E+VG D+L++G+ Q
Sbjct: 359 QAALRLTDTTVERVGADILMTGYPQ 383
>gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
Length = 362
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 194/374 (51%), Gaps = 30/374 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A A K AG+TSP+P G +I + GK+ G G+ G AE A+ A G
Sbjct: 1 MRTALQFAKKGAGWTSPNPMVGAVIVKN-GKIIGSGFHERYGEPHAERNALRACTETPAG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP HG V A++++GITRVV+G +P + G+ VR L+ G++V
Sbjct: 60 ATLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
I++E C +N H ++ PF V KYAMT+D GKIAA
Sbjct: 117 ----SENILKE---ECDRLNEVFFHYIQTKRPFVVMKYAMTMD------------GKIAA 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G++ WI+ + +R+ V R R A++VG TV D+P LT R G P+RI+ L
Sbjct: 158 VTGNSKWITEEKAREHVHLQRHRYTAIMVGVGTVLADDPLLTCRIKDGKNPIRIICDTNL 217
Query: 288 NLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFH 342
P A + + PTI+ T + K YL + G ++ N R ++M
Sbjct: 218 RTPLSAQIIRTAKKVPTIIATCCTEKEKQFAYLHA-GCRILTVPEKNGRVDLQNLMPMLG 276
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+ S+L E GGTL +A+ SG++ KV A++APK++GG++A TPV +G ++ L
Sbjct: 277 EEKIDSLLLEGGGTLNWAALESGIVQKVHAYIAPKLLGGQSAKTPVEGIGFHSPDSSVRL 336
Query: 403 IDICYEQVGPDMLI 416
I+ Q+G D LI
Sbjct: 337 INSSITQLGEDFLI 350
>gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM
2379]
gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter
propionicus DSM 2379]
Length = 367
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/380 (35%), Positives = 196/380 (51%), Gaps = 33/380 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++RA +A + G TSP+P GC+I G + G G+ GT AE+ A+E G
Sbjct: 3 DDIRQMKRALALARRGIGKTSPNPAVGCVIVKD-GVIVGTGWHRKAGTSHAEIHALEMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGA ++ +EP CH T AL++AG+ RVV G+ +P + G + L + G
Sbjct: 62 ESARGADVFVTLEPC-CHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+QV V G ++E K C +N P I + T+ +P +K AMTLD
Sbjct: 121 IQV-VCG------VLE---KECRDLNRPFIKQVTTGMPHVTYKCAMTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA SG + WIS + SR V +R R DA++VG +T+ D+P+LT RH G P+R+
Sbjct: 160 -GKIATVSGASRWISCQESRTLVHRMRARMDAIMVGVDTIIADDPQLTVRHVRGRNPLRV 218
Query: 282 VLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----D 336
V+ L PE L D + T++ T R +Y ++G ++ D N R D
Sbjct: 219 VVDTRLRTPESVRVLGDGNAVNTLIATAETNPRVHLRY-QNQGATILVCDQENGRVSMKD 277
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M RG SIL E GG LA S + GLI + F+APKI+ G + +P S +G M
Sbjct: 278 LMFKLGKRGVQSILLEGGGRLAGSMLEQGLIDEFVFFLAPKIL-GSDGFSPFSLVGRTSM 336
Query: 397 SQALDLIDICYEQVGPDMLI 416
QA L I + G D+++
Sbjct: 337 EQASRLNIIKVSRSGIDIVV 356
>gi|33866124|ref|NP_897683.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. WH 8102]
gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. WH 8102]
Length = 354
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 192/371 (51%), Gaps = 27/371 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ G++ GEG+ G AEV A+ G+
Sbjct: 5 WMRRALALAALAEGRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAA 64
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G T + +EP HG S A++QAG+ RVVV + +P + G + LR G V V
Sbjct: 65 GGTLIVTLEPCCHHGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAG--VVV 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ L+ + E+ N +HR + P+ V K+AM LD G+ A
Sbjct: 123 ITGVLRQEAAEQ--------NRAFLHRVRTGRPWGVLKWAMGLD------------GRTA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WIS SR V LR DAV+VGG TVR D+P LT+R P+R+VL++
Sbjct: 163 LPNGTSQWISGADSRRWVHQLRAGCDAVIVGGGTVRADDPLLTSRGRRDPEPLRVVLSRG 222
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
L+LP EA LWD + A T+V A K A G E +E + +M++ RG
Sbjct: 223 LDLPAEAQLWDTASAATLVAHGPEAAGKQ----APNGPERLELEQCEPLPLMQHLAARGC 278
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+LWECG LAA+AI G + +V A +APK++GG A TP+ ELG M Q L +
Sbjct: 279 NQVLWECGSELAAAAIRQGCVQEVAAVLAPKLMGGVAARTPLGELGFTAMDQVLCGQLLP 338
Query: 407 YEQVGPDMLIS 417
+G D L+S
Sbjct: 339 PRPIGDDWLLS 349
>gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
Length = 369
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 191/385 (49%), Gaps = 28/385 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
RA D ++ A +A+ + G TSP+P G +I G V G G+ G AE+ A+
Sbjct: 5 RARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRD-GIVVGSGWHRVAGEPHAEIHALRM 63
Query: 102 GGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGAT Y+ +EP HG A++ AGI RVV + +P + G + LR+
Sbjct: 64 AGELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + EEAR+ N + ++ PF K AMTLD
Sbjct: 124 GIEV------TTGVLSEEARRQ----NEVFLKWVVTKRPFVTLKTAMTLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GK A+ +G + WI+ +R RV + R DA++VG TV D+P LT R H G P
Sbjct: 164 --GKTASRTGASQWITGAEARTRVHEWRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNP 221
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRD 336
+R+VL T P +A L A TI+ A K L + G EVV F + ++
Sbjct: 222 VRVVLDSTARTPHDAKLLTDGAARTIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPA 281
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M++ S+ E G ++ S +S+GL+ KV AF+AP ++GG +APT V G
Sbjct: 282 LMDFLGREELTSVFVEGGASVHWSFLSAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESP 341
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L D EQVG D+L++G+ Q
Sbjct: 342 QTALRLTDTTVEQVGADILMTGYPQ 366
>gi|124023623|ref|YP_001017930.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Prochlorococcus marinus str. MIT 9303]
gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9303]
Length = 368
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 194/371 (52%), Gaps = 26/371 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A + G TSP+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G T + +EP CH T A++ AG+ RVVV +++P + G + LR GL+V
Sbjct: 74 GGTLVVTLEPC-CHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEV- 131
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ + + EA N +HR ++ P+ + K+AM+LD G+
Sbjct: 132 -----ITAVLEPEAAHQ----NRAFVHRVSTGRPWGILKWAMSLD------------GRT 170
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS +R V LRG+ DAV+VGG TVR D+P LT+R P R+VL++
Sbjct: 171 ALPNGASQWISGGEARSWVHRLRGQCDAVIVGGGTVRADDPLLTSRGHSDPEPKRVVLSR 230
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+L+LP++A LWD++ A T+V + +L G E++ ++++ +
Sbjct: 231 SLDLPQQAQLWDIAVAHTLVAHGLEPGHEQLAHL-PEGPELLALPASEPLELLQALAQQD 289
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+LWECG LAA+A+ G + ++ VAPK++GG A TP +LG M + + L
Sbjct: 290 CNRVLWECGPALAAAALQQGCVQELAVVVAPKLLGGLPARTPFDDLGFTSMKEVVGLASG 349
Query: 406 CYEQVGPDMLI 416
+Q+G D L+
Sbjct: 350 SLQQLGADWLL 360
>gi|334128895|ref|ZP_08502773.1| riboflavin biosynthesis protein RibD [Centipeda periodontii DSM
2778]
gi|333386137|gb|EGK57357.1| riboflavin biosynthesis protein RibD [Centipeda periodontii DSM
2778]
Length = 394
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 192/384 (50%), Gaps = 30/384 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R D +Y+R A IA+ + G TSP+P G +I G + G+ A G AE+ A+
Sbjct: 30 RELDESYMREALRIAEYARGRTSPNPLVGAVI-VRDGAIVASGWHRAAGEPHAEIHALRM 88
Query: 102 GGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGAT Y+ +EP HG A++ AG+ RVV+ + +P + G+ + L +
Sbjct: 89 AGELARGATLYVTLEPCAHHGRTGPCAEAVIAAGLARVVIALSDPNPLVAGRGIHLLTAA 148
Query: 161 GLQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V + I E EAR+ N + T++ PF K AMTLD
Sbjct: 149 GIEV-------TTGICEDEARRQ----NEIFLKWVTTKRPFVTLKTAMTLD--------- 188
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
GKIA+ +G + WI+ +R RV R DA++VG TV D+P LT R HG G
Sbjct: 189 ---GKIASHTGASQWITGAAARARVHAYRNEYDAILVGIGTVLADDPSLTTRLEHGTGKN 245
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSR 335
P+RIVL P +A L APTI+V A + L + G EVV ++
Sbjct: 246 PLRIVLDSEARTPLDAKLVADGAAPTIIVVSERADHRRVNLLRACGAEVVTLGAQRVDIA 305
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+++Y R S+ E G T+ S ++ G + KV AF+AP ++GG A TP+ G
Sbjct: 306 ALLDYLGAREITSLFVEGGATVNWSLLAGGSVDKVHAFIAPMLMGGAEAKTPIGGTGFDS 365
Query: 396 MSQALDLIDICYEQVGPDMLISGF 419
A L D+ EQ+G D+L++G+
Sbjct: 366 PQAAFRLHDMTVEQLGTDILVTGY 389
>gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein;
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus cereus E33L]
gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein;
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus cereus E33L]
Length = 367
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQACGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFITIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L + GV++ +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + LI K+ ++APK+IGG+ AP+ V G+ +M A
Sbjct: 280 VLGGKGVSSLLIEGGGEVNASFIENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Planctomyces
brasiliensis DSM 5305]
gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Planctomyces brasiliensis DSM 5305]
Length = 377
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 190/391 (48%), Gaps = 31/391 (7%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A ++RA ++A + GF P+P G ++ ++ EGY G AEVQA+ G
Sbjct: 10 AVMQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRA 69
Query: 107 RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
RGA ++ +EP + HG S A++QAGI RV +G +P H + Q LR GLQV
Sbjct: 70 RGAWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVE 129
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V +EA + + P T+ P+ K+AMTLD GKI
Sbjct: 130 V------GLCQQEAER----LLRPFTKLMTTGQPYVHAKWAMTLD------------GKI 167
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WIS SR V LRGR DA++ G TV DNP+LTAR G TP+R+V+
Sbjct: 168 ATRTGSSQWISGPESRAVVHKLRGRCDAILTGRGTVLADNPQLTARPPGPRTPLRVVVDS 227
Query: 286 TLNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL-----NSRDVM 338
LP + L SD P ++ A + + L GVEV +F ++
Sbjct: 228 QAQLPLTSQLVQTCSSDQPVLLACTARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALL 287
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
R ++ ECGG L S + LI +V F+ PK++GGK A + V G+ EM++
Sbjct: 288 TELGKRKVTNLFLECGGELLGSFLDQRLIDEVHVFLGPKLVGGKEARSAVLGGGVSEMAE 347
Query: 399 ALDLIDICYEQVGPDMLISGFLQPIPDLMPV 429
AL L +I E + D+ I G + P PV
Sbjct: 348 ALLLEEIEAETLAQDVYIRGIV-PFSSSTPV 377
>gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens
MI-1]
gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfotomaculum reducens MI-1]
Length = 376
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 203/385 (52%), Gaps = 33/385 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A ++A K+ G TSP+P G ++ G+V G+G+ G AEV A+ G
Sbjct: 3 QDRHYMNMALELAAKARGRTSPNPMVGAVL-VKDGEVVGKGFHAKAGGAHAEVVALADAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP CH T AL +AG+ RVV + +P + G+ + L+ G
Sbjct: 62 DRAKGATVYVTLEPC-CHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V S ++EE K +N I T+++PF V K A +LD
Sbjct: 121 IEV-------VSGLLEEEAKE---LNEVFIKYITTKIPFIVLKAATSLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +SG + WI+ T+R+ LR DA++VG NTV D+P LTAR G G P+
Sbjct: 160 -GKIATASGESKWITGDTARNYGHRLRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPL 218
Query: 280 RIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNS 334
RI++ P A L S A TI+ T + A + + L + G EV+ E ++
Sbjct: 219 RIIVDSMSRTPTSAKILTQESAAHTIIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDL 278
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ +M ++ S+L E GG ++ SA+++G++ KV F+APKIIGG AP PV G+
Sbjct: 279 KKLMVLLGEKQISSVLIEGGGKISGSALNAGIVDKVAWFIAPKIIGGDLAPGPVRGEGIQ 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
+ A L + + +G D+LI+G+
Sbjct: 339 FLKDATKLYKVTVQNLGADILITGY 363
>gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
Length = 350
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 187/363 (51%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RG T Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA S + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSLSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+R++L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDR 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T + +K L + GV+V +N ++++ ++G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ DI + Q+G D
Sbjct: 280 VNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGNGITKMKDAIEFKDISFTQIGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|407475037|ref|YP_006789437.1| riboflavin biosynthesis protein RibD [Clostridium acidurici 9a]
gi|407051545|gb|AFS79590.1| riboflavin biosynthesis protein RibD [Clostridium acidurici 9a]
Length = 365
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 204/385 (52%), Gaps = 31/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
++ Y++RA ++A K G SP+P G +I + + GEGY G AE+ A++
Sbjct: 2 ESVYMKRAIELAKKGEGHVSPNPLVGAVIVKNES-IIGEGYHGFYGGDHAEINALKNSTE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP G V+A+V+ I +VV+G+++P + G+ ++ L+S G++
Sbjct: 61 SVEGSTMYVTLEPCSHFGKTPPCVNAIVENNIKKVVIGLKDPNLLVSGRGIQILKSNGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + ++E+ C +N + T++ PF + KYAMTLD G
Sbjct: 121 V-------VTSVLED---ECKKLNEIFLKYITTKTPFVILKYAMTLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA G + WIS+ SR V ++R + +++VG TV +DNP L R G P+RI
Sbjct: 159 KIATHIGDSKWISNSLSRKHVHEIRHKLSSIMVGIGTVLKDNPSLNTRLEDKEGLDPIRI 218
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
++ +P ++ + ++ S + TIV T A + K L + VE++ + +S + Y
Sbjct: 219 IVDTKGRIPLDSKVINLKSSSRTIVATTELAPKDKLKALEDKDVEIIITPVKDSYVDLIY 278
Query: 341 F----HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+G SIL E G L+ SA+ ++ KV AF++PKIIGG +A TP+ G+ M
Sbjct: 279 LLKSLGSKGIDSILLEGGSELSFSALQENIVDKVVAFISPKIIGGSSAKTPIGGTGIEFM 338
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
A++L +I + D++I G+++
Sbjct: 339 KDAINLNNISLKTFNEDIMIEGYIE 363
>gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 358
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 191/375 (50%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI RVVV +P + G+ ++ L+ G+ V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++L TL
Sbjct: 158 SLSDSKWITSTEARQEVHQIRNENAAILVGVNTVQKDNPSLTTRIPNGRNPIRVILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T + +K L + GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDGEAPTWIFTTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ +VAPKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GISSLLIEGGGEVNASFIENKLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + QVG D G+
Sbjct: 338 ISFTQVGKDYRFIGY 352
>gi|423581589|ref|ZP_17557700.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD014]
gi|423635898|ref|ZP_17611551.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD156]
gi|401215079|gb|EJR21799.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD014]
gi|401276448|gb|EJR82400.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD156]
Length = 367
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 192/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAE 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV+ DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQEDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EA + +APT + T + +K L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEAKVITDGEAPTWIFTTSNHAAEKKKALENAGVKVFVTSGEKHINLYEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
++G S+L E GG + AS I + LI K+ ++APK+IGG+ AP+ V G+ +M A
Sbjct: 280 VLGEKGVSSLLIEGGGEVNASFIENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + QVG D G+
Sbjct: 340 IEFKDISFTQVGKDYRFIGY 359
>gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 350
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 186/363 (51%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RG T Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA S + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSLSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+R++L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDR 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T + +K L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ DI + Q+G D
Sbjct: 280 VNASFIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum
thermopropionicum SI]
gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum
thermopropionicum SI]
Length = 376
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 207/390 (53%), Gaps = 38/390 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A ++A ++ G TSP+P G ++ G V G+GY GT AE+ A++ G
Sbjct: 2 DDRYYMNMALELAARARGRTSPNPMVGAVL-VKNGVVVGQGYHMKAGTPHAEIIALKEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ RGAT Y+N+EP CH T A+++AG+ RVV + +P + G ++ ++ G
Sbjct: 61 NEARGATLYVNLEPC-CHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
L+V + + +EAR+ +N I T+R PF + K A++LD
Sbjct: 120 LEVTL------GVMEDEARE----LNEAFIKYVTTRRPFVLAKAALSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIAA +G + WI+ +R V LR DA++VG T+ D+P LTAR GGG P+
Sbjct: 159 -GKIAARTGRSKWITGPAARAYVHQLRDWYDAILVGIGTILADDPSLTARLPGGGGRDPV 217
Query: 280 RIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR--- 335
R++L P A + S APT++ GA K L G +VV ++NS
Sbjct: 218 RVILDSLARTPLNARVIKQKSKAPTVIAVTAGAPPGRVKALQEAGAQVV---VVNSGPRV 274
Query: 336 ---DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++M ++ S+L E G + SA ++G++ KV F+APKIIGG++AP PV G
Sbjct: 275 DLPELMRILAEKEITSVLIEGGAEVHGSAFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEG 334
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQP 422
+ + AL+L I ++ D+ I G+++P
Sbjct: 335 VDDPGGALELERIKVSRLDQDICIEGYVKP 364
>gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
and5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. RS9917]
gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
and5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. RS9917]
Length = 369
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 197/384 (51%), Gaps = 33/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKP-AEVQAVEAGGSFC 106
++RRA +A G TSP+P G ++ + G + GEGY +A+ KP AEV A+ G
Sbjct: 9 WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGY-HARAGKPHAEVGALVQAGEAA 67
Query: 107 RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RG T + +EP CH T V A++ AGI RVVV + +P + G ++ LR GL+V
Sbjct: 68 RGGTLVVTLEPC-CHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEV 126
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+ + EA N +HR + P+ + K+AM+LD G+
Sbjct: 127 ------IPGVLEAEAAHQ----NRAFVHRVKTGRPWGLLKWAMSLD------------GR 164
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
A +G + WIS +R V LR DAV+VGG TVR D+P LT+R P+R+VL+
Sbjct: 165 TALPNGASQWISGAAARAWVHRLRAHCDAVIVGGGTVRADDPLLTSRGLRTPEPLRVVLS 224
Query: 285 QTLNLPEEANLWDVSDAPTI------VVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
++L+LP A +W ++APT+ V + L + GV ++
Sbjct: 225 RSLDLPAAARIWTTAEAPTLLAHGPAVEAADAESSPLLEALGAAGVICTALKRCEPLALL 284
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E RG +LWECG LAA+A+ G + ++ +APK++GG A TP+++LG + Q
Sbjct: 285 EQLASRGCNRVLWECGPALAAAALQQGCVQELAVVIAPKLLGGLAARTPLADLGFTALDQ 344
Query: 399 ALDLIDICYEQVGPDMLISGFLQP 422
+ L D+ +++ D ++ + P
Sbjct: 345 VIPLQDLNLQRLERDAVVQALVPP 368
>gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium
succinatutens YIT 12067]
Length = 388
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 201/393 (51%), Gaps = 32/393 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+R D AY++RA ++A ++ G TSP+P GC+I + G + GEGY + G AEV A+
Sbjct: 12 LARMTDEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNAL 71
Query: 100 EAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+GATAY+ +EP +G AL +AGI +VVV +P + GQ + LR
Sbjct: 72 AEAKQMAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLR 131
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
QG++V + +EA++ +N T + PF KYAMTLD
Sbjct: 132 LQGIEV------VTGVCEKEAKR----LNERFFTWITKQRPFITLKYAMTLD-------- 173
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA ++G + WI+ + +R LR + DAV+VG TV D+P LT R G P
Sbjct: 174 ----GKIATATGDSKWITGEEARTFAHRLRKQHDAVLVGIGTVLEDDPELTTRLVRGKNP 229
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEF----DILN 333
+R+VL +L + A + + A TI+ T + K + A VEVV +L
Sbjct: 230 VRVVLDSSLKISLMAAVLN-PLADTIIFTGLDSDIVKAEALAALPNVEVVRLPLADGVLP 288
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V++ +RG S+L E G + + +GL +V AFVAPK+IGG A PV G
Sbjct: 289 VAQVVQALAERGIASLLVEGGSAIHGALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGS 348
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQPIPDL 426
+ L ++ E++G D+LI+G +P+L
Sbjct: 349 SLVETGWQLTEVEMEKLGSDVLITGL---VPEL 378
>gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
Length = 367
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 192/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E ++ ++ PF K +TLD
Sbjct: 122 EVLVGVCEEKSKKMNEVFNKYIM----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++
Sbjct: 160 GKIATSLSDSKWITSTEARQEVHKIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T + +K L S GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A
Sbjct: 280 VLGRKGISSLLIEGGGEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++ DI + VG D G+
Sbjct: 340 IEFKDISFTPVGKDYRFIGY 359
>gi|390933691|ref|YP_006391196.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569192|gb|AFK85597.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 360
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 198/380 (52%), Gaps = 30/380 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA +A G T+P+P G +I G++ GEGY G AEV A++
Sbjct: 4 YMKRALQLAKLGVGHTNPNPLVGAVIVKD-GRIIGEGYHEYYGGPHAEVNALKNAKEDVS 62
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GAT Y+ +EP CH T V A++++GI V + + +P + + G+ ++ L+ GL V+
Sbjct: 63 GATLYVTLEPC-CHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGKGIKKLKEAGLNVY 121
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ +EA K +N I TSR P+ + K AMT+D GKI
Sbjct: 122 ------TGLLKDEAEK----LNEVFIKYITSREPYVILKSAMTID------------GKI 159
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
+ +G + WI+++ SR+ V +RG A++ G NTV +DNP LT R G P+R+++
Sbjct: 160 STFTGDSKWITNEKSREHVHKVRGSVMAIMAGINTVIKDNPHLTVRLQGYKNPLRVIVDS 219
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEYF 341
+P +AN+ A T++ T K L GV+VV + ++ + ++
Sbjct: 220 HGRIPLDANVIIDKSAKTLIATTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLKKLIHTL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+G SIL E GGTL SA+ G++ KV ++A KIIGG N+ TPV G+ + A+
Sbjct: 280 GKKGIDSILIEGGGTLNYSALKEGIVDKVMFYIALKIIGGSNSLTPVEGDGIALIKDAIM 339
Query: 402 LIDICYEQVGPDMLISGFLQ 421
+ I ++ D+LI G+++
Sbjct: 340 VEKIDIKKFDDDILIEGYIK 359
>gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Clostridium thermocellum ATCC 27405]
gi|125712853|gb|ABN51345.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum ATCC
27405]
Length = 365
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 203/387 (52%), Gaps = 31/387 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
+E ++ RA +A G T+P+P G ++ GK+ EGY G AEV+A
Sbjct: 2 SEKEFFMSRAIKLAKLGWGKTNPNPLVGAVVVKD-GKIIAEGYHKQLGGPHAEVEAFNNA 60
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G T Y+N+EP +G ++ GI +VV I++P + G+ L++ G
Sbjct: 61 KEDVAGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V + + +N I + PF + K AMTLD
Sbjct: 121 IEVEV----------GVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +SG + W++ + +R+ V +R R AV+VG NTV +DNP LT R G P+
Sbjct: 160 -GKIATASGDSKWVTGEKARNHVHVIRDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPV 218
Query: 280 RIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
RIV+ ++P ++N+ + S A I+ T ++ +K L +GV++++ D + R +
Sbjct: 219 RIVVDSKGSIPLDSNVINSNSKAGVILATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDL 278
Query: 339 EYFHDRGYL----SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ D Y S+L E GGTL +SAIS+G++ KV F++PKI+GG+NAPT V +G +
Sbjct: 279 KLLMDELYKLEIDSVLLEGGGTLNSSAISAGIVDKVMCFISPKIVGGENAPTSVEGIGAL 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
M +A+ + +I + G D+L+ G+++
Sbjct: 339 RMCEAIGVKNISVVKFGEDILLEGYIE 365
>gi|414152820|ref|ZP_11409149.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411456010|emb|CCO07051.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 375
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 202/384 (52%), Gaps = 33/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A K+ G TSP+P G +I G+V G G+ G+ AEV A+ G
Sbjct: 4 DRHYMQMALELAAKARGRTSPNPMVGAVI-VKDGRVVGRGFHARAGSAHAEVVALAEAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP CH T AL++AG+ RVV + +P + G+ + L+ G+
Sbjct: 63 QARGATVYVTLEPC-CHHGRTGPCTEALLKAGVQRVVAAMTDPNPLVAGKGLAVLQKAGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + EEAR+ +N I T+ PF V K A +LD
Sbjct: 122 EVAC------GLLAEEARR----LNEVFIKYITTGRPFVVMKAATSLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA ++G + WI++ +R LR DA++VG NTV D+P LTAR G G P+R
Sbjct: 160 GKIATATGESKWITNTAARAYGHRLRDMYDAILVGVNTVLTDDPSLTARLPEGRGKDPIR 219
Query: 281 IVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
++L P L +S A TI+ T A + + L + G EV+ E ++
Sbjct: 220 VILDSNARTPTATKILTQLSAAHTIIATTEQAPVERRASLLAAGAEVLVVPGEGPRVDLV 279
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ME ++ S+L E GG + +A+++G++ K+ F+APKIIGG AP PV G++
Sbjct: 280 RLMEMLAEKEITSVLIEGGGQVNGAALAAGIVDKIVWFLAPKIIGGDRAPGPVRGQGILS 339
Query: 396 MSQALDLIDICYEQVGPDMLISGF 419
+ A+ L D+ E++ D+LI+G+
Sbjct: 340 LQDAVKLFDVSVERLDEDILITGY 363
>gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
2360]
gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
JW20]
gi|385779454|ref|YP_005688619.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
1313]
gi|419721852|ref|ZP_14249006.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum AD2]
gi|419725596|ref|ZP_14252636.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum YS]
gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
2360]
gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
JW20]
gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
1313]
gi|380770982|gb|EIC04862.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum YS]
gi|380782111|gb|EIC11755.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum AD2]
Length = 368
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 203/387 (52%), Gaps = 31/387 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
+E ++ RA +A G T+P+P G ++ GK+ EGY G AEV+A
Sbjct: 5 SEKEFFMSRAIKLAKLGWGKTNPNPLVGAVVVKD-GKIIAEGYHKQLGGPHAEVEAFNNA 63
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G T Y+N+EP +G ++ GI +VV I++P + G+ L++ G
Sbjct: 64 KEDVAGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAG 123
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V + + +N I + PF + K AMTLD
Sbjct: 124 IEVEV----------GVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLD----------- 162
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +SG + W++ + +R+ V +R R AV+VG NTV +DNP LT R G P+
Sbjct: 163 -GKIATASGDSKWVTGEKARNHVHVIRDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPV 221
Query: 280 RIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
RIV+ ++P ++N+ + S A I+ T ++ +K L +GV++++ D + R +
Sbjct: 222 RIVVDSKGSIPLDSNVINSNSKAGVILATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDL 281
Query: 339 EYFHDRGYL----SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ D Y S+L E GGTL +SAIS+G++ KV F++PKI+GG+NAPT V +G +
Sbjct: 282 KLLMDELYKLEIDSVLLEGGGTLNSSAISAGIVDKVMCFISPKIVGGENAPTSVEGIGAL 341
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
M +A+ + +I + G D+L+ G+++
Sbjct: 342 RMCEAIGVKNISVVKFGEDILLEGYIE 368
>gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
8_1_57FAA]
gi|149832246|gb|EDM87331.1| riboflavin biosynthesis protein RibD [Ruminococcus obeum ATCC
29174]
gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
8_1_57FAA]
Length = 395
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 198/384 (51%), Gaps = 38/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I GK+ GEGY G AE A+ +
Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GKIIGEGYHKKYGELHAERNAIASLTE 81
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR G+
Sbjct: 82 SAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGV 140
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R+ C +N H T++ P+ V KYAMTLD
Sbjct: 141 TVV---EDFM-------REECDQLNPVFFHYITTKTPYVVMKYAMTLD------------ 178
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +++R V +R + ++ G TV D+P L R G +P+RIV
Sbjct: 179 GKIATKTGASKWITGESARKEVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 238
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFDILNSR 335
L +P + + ++ +V Q+ A+ K K L + GVE + E + ++ +
Sbjct: 239 CDSKLRIPPGSQIVKSAEKYRTIVAYAEQKNAKEKI-KILHTMGVETIYCPDEKNQIDLK 297
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+M +RG SIL E GGTL SA+ +G++ +V AFVAPK+ GG TPV +G+
Sbjct: 298 KLMADLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVEL 357
Query: 396 MSQALDL--IDICYEQVGPDMLIS 417
S+A++L DIC Q+G D+ I
Sbjct: 358 PSEAVELKYTDIC--QIGEDIRIK 379
>gi|336440555|ref|ZP_08620141.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
1_1_57FAA]
gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ruminococcus obeum A2-162]
gi|336012785|gb|EGN42680.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
1_1_57FAA]
Length = 375
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 198/384 (51%), Gaps = 38/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I GK+ GEGY G AE A+ +
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GKIIGEGYHKKYGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR G+
Sbjct: 62 SAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R+ C +N H T++ P+ V KYAMTLD
Sbjct: 121 TVV---EDFM-------REECDQLNPVFFHYITTKTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +++R V +R + ++ G TV D+P L R G +P+RIV
Sbjct: 159 GKIATKTGASKWITGESARKEVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFDILNSR 335
L +P + + ++ +V Q+ A+ K K L + GVE + E + ++ +
Sbjct: 219 CDSKLRIPPGSQIVKSAEKYRTIVAYAEQKNAKEKI-KILHTMGVETIYCPDEKNQIDLK 277
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+M +RG SIL E GGTL SA+ +G++ +V AFVAPK+ GG TPV +G+
Sbjct: 278 KLMADLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVEL 337
Query: 396 MSQALDL--IDICYEQVGPDMLIS 417
S+A++L DIC Q+G D+ I
Sbjct: 338 PSEAVELKYTDIC--QIGEDIRIK 359
>gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
Length = 360
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 192/375 (51%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A+ G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENANAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E ++ ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIM----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++L TL
Sbjct: 158 SLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P +AN+ +APT + T + +K L + GV+V +N ++++ +
Sbjct: 218 RIPMKANVVTDEEAPTWIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + QVG D G+
Sbjct: 338 ISFTQVGKDYRFIGY 352
>gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
gi|336234823|ref|YP_004587439.1| riboflavin biosynthesis protein RibD [Geobacillus
thermoglucosidasius C56-YS93]
gi|423719379|ref|ZP_17693561.1| riboflavin biosynthesis protein ribD [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
gi|335361678|gb|AEH47358.1| riboflavin biosynthesis protein RibD [Geobacillus
thermoglucosidasius C56-YS93]
gi|383367684|gb|EID44960.1| riboflavin biosynthesis protein ribD [Geobacillus thermoglucosidans
TNO-09.020]
Length = 361
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 27/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A ++A G TSP+P G ++ S G++ G G G AEV A+ G
Sbjct: 4 DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNS-GEIVGFGAHLKAGEPHAEVHAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G L+ AG+ RVV+ +P + G+ + LR+ G+
Sbjct: 63 KAKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + EEA + +N H ++ PF KYA +LD G
Sbjct: 123 VKL------GVLKEEADE----LNRVFFHYIATKTPFVTLKYASSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA ++G + WI+S+ +R+ V R DA++VG +TV DNP LT R G G P+RIV
Sbjct: 161 KIATATGESKWITSEAAREDVHRYRAVHDAILVGVDTVIADNPSLTVRLPGSGKNPIRIV 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L P EAN+ A T ++ G + +K S+ V+V+ +N +++
Sbjct: 221 LDTHLRTPLEANILQDGQAETWLIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHV 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+R S+ E G + S + +G ++++ A+ APK+IGGK APTP+ +G M+ +
Sbjct: 281 LGERRITSLFVEGGSRVHDSFVRAGAVNEIVAYFAPKLIGGKQAPTPIGGIGFASMADVM 340
Query: 401 DLIDICYEQVGPDMLI 416
L E +GPD+ I
Sbjct: 341 QLQIRRVETIGPDIKI 356
>gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
str. JGS1495]
gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
str. JGS1495]
Length = 365
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKD-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G++++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI++K SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKDFKSKWITNKKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKNFDKDILIE 361
>gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 370
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 189/364 (51%), Gaps = 29/364 (7%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
TSP+P G +I + GK+ EGY G AE +A+ +GAT Y+ +EP CH
Sbjct: 26 TSPNPMVGAVIVKN-GKIISEGYHKKAGLPHAEAEAIRNANESLKGATLYVTLEPC-CHK 83
Query: 123 DHT---AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
D A++ +GI RVV+G+R+P + G+ V L + G++V ++ + EE
Sbjct: 84 DKKTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGIKV------IEGVLEEEV 137
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+K +N I T+ PF + K AMTLD GKIA G + WI+S+
Sbjct: 138 KK----LNEFYIKYITTSRPFVILKIAMTLD------------GKIATPLGESKWITSEK 181
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
SR V +R R DA++ TV +DNP T+R GG P+R+++ L +P ++++
Sbjct: 182 SRKFVHLIRSRVDALLSAYGTVLKDNPMFTSRIKGGKNPLRVIIDPELKIPLNYHVYNPP 241
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEYFHDRGYLSILWECGGTL 357
VV ++ K K+L RG+E+V F + ++ + +ME R S++ E G +L
Sbjct: 242 PNTIAVVHEKKLNDKNIKHLIHRGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSL 301
Query: 358 AASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
+ A+ SG++ K+ F+APKIIGG + + + +A ++ D+ G D+ I
Sbjct: 302 NSYALWSGIVDKLMIFIAPKIIGGAQSYPSIGGNIYKNLDEAFEIKDLKIRMFGGDIFIE 361
Query: 418 GFLQ 421
G+L+
Sbjct: 362 GYLK 365
>gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
Length = 362
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K GFTSP+P G +I G++ G+G+ G AE A+ A +G
Sbjct: 1 MKIALQLAKKGCGFTSPNPMVGAVIVKE-GRIIGQGWHEKYGEAHAERNALAACTENPKG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV--H 165
AT Y+ +EP +G ++A+++AGI RVV+G +P + G+ ++ L+ QG+ V H
Sbjct: 60 ATMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEH 119
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+L ED C +N H ++ PF V KYAMT+D GKI
Sbjct: 120 ILQED------------CERLNEVFFHYIQTKRPFVVMKYAMTMD------------GKI 155
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
+ +G + W++ +T+R V R R A++ G T+ D+P+LT R GG P+RI+
Sbjct: 156 STKTGASKWVTGETARRHVAQQRHRYAAIMAGIGTILTDDPQLTCRIEGGKNPIRIICDT 215
Query: 286 TLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVMEY 340
TL +P AN+ + PTI+ T + Y +G V+ + N +M
Sbjct: 216 TLRIPLSANVVSTAKQIPTIIATCCRDAERCALY-EKKGCHVLLVEERNGHVDLEQLMYL 274
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++ SIL E GGTL +A+SSG++ KV A++APK+ GG+ A TP+ G+ + A
Sbjct: 275 LGEKQIDSILLEGGGTLNWAALSSGIVQKVQAYIAPKLFGGQAAKTPIEGEGICYPTAAF 334
Query: 401 DLIDICYEQVGPDMLI 416
L + C +G D LI
Sbjct: 335 RLKNSCVLPLGEDFLI 350
>gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4]
gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Geobacter uraniireducens Rf4]
Length = 368
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 195/378 (51%), Gaps = 31/378 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RA +A + G T+P+P GC+I G V GEG+ GT AEV A+ G R
Sbjct: 8 MMKRAIVLAKRGIGRTAPNPTVGCVI-VKDGAVVGEGWHKKAGTPHAEVHALRQAGEMAR 66
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP G AL+ A + RV +G+ +P + G+ + LRS G++V V
Sbjct: 67 GADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSAGIEVVV 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++E+ +C +N P I T+ +PF + K AMTLD GK A
Sbjct: 127 -------SVLED---NCRSLNEPFIKHMTTGLPFVILKSAMTLD------------GKTA 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S SR V LR + DA++VG TV D+P LT+R G P+R+++ T
Sbjct: 165 TAGKDSKWITSDKSRQYVHKLRAKLDAIMVGVGTVMADDPLLTSRIPAGRDPLRVIVDST 224
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFHDR 344
L +P + + V S A T++ T + + AS G +V+ N R D+ + F
Sbjct: 225 LRIPLSSQVLHVDSPAKTVIATISDDEAQAARITAS-GADVLRCRQKNGRVDLHDLFVKL 283
Query: 345 GYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
G L S+L E GG LA A+ GLI K F APK++GG+ P S G+ M+ A+
Sbjct: 284 GGLGVQSLLLEGGGALAGEALRCGLIDKCMFFYAPKLVGGEGL-GPFSGKGVELMADAIT 342
Query: 402 LIDICYEQVGPDMLISGF 419
L +I ++G D+L+ G+
Sbjct: 343 LKNISITKIGSDILVQGY 360
>gi|404493065|ref|YP_006717171.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Pelobacter carbinolicus DSM 2380]
gi|77545129|gb|ABA88691.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Pelobacter carbinolicus DSM 2380]
Length = 371
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/381 (34%), Positives = 190/381 (49%), Gaps = 35/381 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R+A D+A + G T P+P G LI G++ G G+ G AE+ A+ G R
Sbjct: 8 FMRQAIDLARRGEGRTRPNPAVGALI-VKDGEIVGRGFHPKAGQPHAEIYALREAGDRAR 66
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP HG A+++AG+ RV VG +P + G +R L+ G++VH
Sbjct: 67 GADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVHC 126
Query: 167 -LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ E+L +II AP + PF V K AMTLD GK
Sbjct: 127 GVLENLCRRII-----------APFAKHILTAKPFVVLKSAMTLD------------GKT 163
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVL 283
A +SGH+ W++S SR V LR R D ++VG TV +D+P+LT R GG P RIVL
Sbjct: 164 ATASGHSQWVTSAASRHEVHKLRDRMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVL 223
Query: 284 TQTLNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
+L +PE+A + ++ S A I T R ++ K + A+ G EV+ R +
Sbjct: 224 DSSLRIPEDAAILNLQSSAATLIATTARASKAKIEAIRAA-GAEVLVLPESGGRVDLHAL 282
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M RG SIL E G L + +GL+ +V F+APKI+GG G++ M+
Sbjct: 283 MTALGARGLQSILLEGGAELNGAFWRAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMT 342
Query: 398 QALDLIDICYEQVGPDMLISG 418
+A L D+ G D LI G
Sbjct: 343 EATVLEDVRVTHFGDDTLIEG 363
>gi|383753813|ref|YP_005432716.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimi dine deaminase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365865|dbj|BAL82693.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimi dine deaminase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 364
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 201/389 (51%), Gaps = 39/389 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++R A ++A + G TSP+P G +I G++ G G+ GT AE+ A+ G
Sbjct: 2 QDEDFMRVALNLARNATGRTSPNPLVGAVI-VREGRIVGAGWHRKAGTPHAEIHALNMAG 60
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G A+V+AGI R V+ + +P + G+ + L G+
Sbjct: 61 DLAKGATLYVTLEPCSHYGRTGPCAEAVVKAGIKRCVIAMGDPNPKVAGKGIAILEQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + ++E + +N +H ++PF V K AM+LD
Sbjct: 121 EV-------RCGVLE---AEAMALNEVFLHWIREKMPFVVLKTAMSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +G + WI+ + +R RV + R D ++VG TV D+P LT R +G G P+R
Sbjct: 159 GKIATHTGKSQWITGEAARARVHEYRDLYDGIMVGIGTVLADDPSLTTRLPNGTGKNPVR 218
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--------VEFDIL 332
IV+ P +A L + A TI+ A + + L +GV + V+ +L
Sbjct: 219 IVVDSKARTPLDAKLVNDGAALTIIAVTEAAPKDRVQALKDKGVAIMIAGSGPQVDLPLL 278
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
M+ + S+ E GGTL + + +GL+ KV AF+APKIIGG+ A T V G
Sbjct: 279 -----MKKLGEMEICSVFVEGGGTLNFALLQAGLVSKVHAFIAPKIIGGREALTSVEGEG 333
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQ 421
++S+A++L + EQ+G D+L++G+++
Sbjct: 334 FAQLSEAVELNNTTVEQLGADILLTGYVK 362
>gi|347533641|ref|YP_004840404.1| riboflavin biosynthesis protein RibD [Roseburia hominis A2-183]
gi|345503789|gb|AEN98472.1| riboflavin biosynthesis protein RibD [Roseburia hominis A2-183]
Length = 375
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 38/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I GK+ GEGY G AE A+ +
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GKIIGEGYHKKYGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR G+
Sbjct: 62 SAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R+ C +N H T++ P+ V KYAMTLD
Sbjct: 121 TVV---EDFM-------REECDQLNPVFFHYITTKTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +++R V +R + ++ G TV D+P L R G +P+RIV
Sbjct: 159 GKIATKTGASKWITGESARKEVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFDILNSR 335
L +P + + ++ +V Q+ A K K L + GVE + E + ++ +
Sbjct: 219 CDSKLRIPPGSQIVKSAEKYRTIVAYAEQKNAEEKI-KILHTMGVETIYCPDEKNQIDLK 277
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+M +RG SIL E GGTL SA+ +G++ +V AFVAPK+ GG TPV +G+
Sbjct: 278 KLMADLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVEL 337
Query: 396 MSQALDL--IDICYEQVGPDMLIS 417
S+A++L DIC Q+G D+ I
Sbjct: 338 PSEAVELKYTDIC--QIGEDIRIK 359
>gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
3_1_46FAA]
gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
3_1_46FAA]
Length = 375
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 38/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I GK+ GEGY G AE A+ +
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GKIIGEGYHKKYGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR G+
Sbjct: 62 SAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R+ C +N H T++ P+ V KYAMTLD
Sbjct: 121 TVV---EDFM-------REECDQLNPVFFHYITTKTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +++R V +R + ++ G TV D+P L R G +P+RIV
Sbjct: 159 GKIATKTGASKWITGESARKEVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFDILNSR 335
L +P + + ++ +V Q+ A+ K K L + GVE + E + ++ +
Sbjct: 219 CDSKLRIPPGSQIVKSAEKYRTIVAYAEQKNAKEKI-KILHTMGVETIYCPDEKNQIDLK 277
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+M +RG SIL E GGTL SA+ G++ +V AFVAPK+ GG TPV +G+
Sbjct: 278 KLMADLGNRGIDSILLEGGGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVEL 337
Query: 396 MSQALDL--IDICYEQVGPDMLIS 417
S+A++L DIC Q+G D+ I
Sbjct: 338 PSEAVELKYTDIC--QIGEDIRIK 359
>gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
Length = 385
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 199/383 (51%), Gaps = 31/383 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A ++A K+ G TSP+P G +I G+V G+GY GT AEV A+ G
Sbjct: 5 DVKYMRMALELAAKARGNTSPNPMVGAVIVKD-GRVIGKGYHMKAGTPHAEVHALREAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G S A++ AG+ RVVV + +P + GQ ++ +R G+Q
Sbjct: 64 LSRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREAGIQ 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V L K EAR+ +N I +R PF V K AMTLD G
Sbjct: 124 VEV---GLMEK---EARE----LNEVFIKYIKTRRPFVVMKSAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA ++GH+ WI+ + +R V R DA++VG TV DNP LT R P+RI
Sbjct: 162 KIATATGHSRWITGEEARRLVHLWRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRI 221
Query: 282 VLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
+L LP + N L + AP IVV+ R+ + L G EV+ R +
Sbjct: 222 ILDSLGRLPVDVNVLKTIEQAPVIVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAA 281
Query: 341 FHD----RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
D R S+ E G T+ AS + + L K FVAPKI+GG AP PV ++G+ M
Sbjct: 282 LLDELGRREITSLFVEGGATVNASFLKNRLADKTVWFVAPKIVGGPQAPGPVGDMGIQFM 341
Query: 397 SQALDLIDICYEQVGPDMLISGF 419
+ L++ ++ + +GPD+LI+G+
Sbjct: 342 DECLNIKNMSVQDIGPDLLITGY 364
>gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CC9605]
gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605]
Length = 349
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 194/369 (52%), Gaps = 27/369 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A + G TSP+P G ++ G++ GEG+ G AEV A+ G +G
Sbjct: 1 MRRALALAALAEGHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T + +EP HG S A+++AGI RVV+ + +P + G +R LR GL+V
Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEV--- 117
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ + EEAR+ N +HR + PF + K+AM+LD G+ A
Sbjct: 118 ---ISGVLREEARQQ----NRAFLHRVRTGRPFGILKWAMSLD------------GRTAL 158
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G + WIS +RD V LR DAVVVGG TVR D+P LT+R P+R+VL+++L
Sbjct: 159 PNGASQWISGPPARDWVHRLRSGMDAVVVGGGTVRGDDPLLTSRGRRSPEPLRVVLSRSL 218
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
+LP++A LWD + APT+V G Q+ + G + + +ME RG
Sbjct: 219 DLPDQAQLWDTAVAPTLVA--HGPEADPQRLPS--GPDELVLSACEPEQLMEALAQRGCN 274
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
+LWECG LAA+ I G + ++ A VAPK++GG A TP+ +L M Q L
Sbjct: 275 QVLWECGPELAAAVIRQGCVQEIAAVVAPKLMGGMPARTPLGDLHFSAMDQVLQGQWHQS 334
Query: 408 EQVGPDMLI 416
E VG D L+
Sbjct: 335 EPVGNDWLL 343
>gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
gi|145847785|gb|EDK24703.1| riboflavin biosynthesis protein RibD [Ruminococcus torques ATCC
27756]
Length = 395
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 38/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I GK+ GEGY G AE A+ +
Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GKIIGEGYHKKYGELHAERNAIASLTE 81
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR G+
Sbjct: 82 SAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGV 140
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R+ C +N H T++ P+ V KYAMTLD
Sbjct: 141 TVV---EDFM-------REECDQLNPVFFHYITTKTPYVVMKYAMTLD------------ 178
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +++R V +R + ++ G TV D+P L R G +P+RIV
Sbjct: 179 GKIATKTGASKWITGESARKEVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 238
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFDILNSR 335
L +P + + ++ +V Q+ A+ K K L + GVE + E + ++ +
Sbjct: 239 CDSKLRIPPGSQIVKSAEKYRTIVAYAEQKNAKEKI-KILHTMGVETIYCPDEKNQIDLK 297
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+M +RG SIL E GGTL SA+ G++ +V AFVAPK+ GG TPV +G+
Sbjct: 298 KLMADLGNRGIDSILLEGGGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVEL 357
Query: 396 MSQALDL--IDICYEQVGPDMLIS 417
S+A++L DIC Q+G D+ I
Sbjct: 358 PSEAVELKYTDIC--QIGEDIRIK 379
>gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
Kyoto]
gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
Kyoto]
Length = 365
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 196/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A++ G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGSHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG T+ +DNP LT R GG +P I++
Sbjct: 164 TRTGESKWITGEDARYKVQQIRNDLSGIMVGIGTIIKDNPLLTTRIEGGRSPRAIIVDSN 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKY--LASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + I + F K L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETLNKRAIYIATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLGSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|357058875|ref|ZP_09119721.1| riboflavin biosynthesis protein RibD [Selenomonas infelix ATCC
43532]
gi|355373221|gb|EHG20542.1| riboflavin biosynthesis protein RibD [Selenomonas infelix ATCC
43532]
Length = 367
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 193/381 (50%), Gaps = 28/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y+R A IA+ + G T+P+P G +I G + G+ A G AE+ A+ G
Sbjct: 5 DESYMREALRIAEHARGRTAPNPLVGAVIVRD-GTIIASGWHRAAGEPHAEIHALRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP HG A++ AGI RVV+ + +P + G+ + L+ G++
Sbjct: 64 LARGATLYVTLEPCAHHGRTGPCAEAVIAAGIARVVIALCDPNPLVAGRGLALLKEAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + EAR+ N + T + PF K AMT+D G
Sbjct: 124 V------VTGVCEAEARRQ----NEVFLKWVTQKRPFVTLKTAMTID------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA+ +G + WI+ + +R RV + R DA++VG TV D+P LT R GH P+RI
Sbjct: 162 KIASHTGASQWITGEAARRRVHEYRNAYDAILVGIGTVLADDPSLTTRLPDRTGHNPLRI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVME 339
VL P +A L APT++V A ++ + L + GVE + + ++ +++
Sbjct: 222 VLDSEARTPLDAKLVTDCAAPTLIVVSERADQRRVRLLHACGVETLTLGAERVDIAALLD 281
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y R S+ E GGT+ S ++ + KV AF+AP ++GG A TPV G A
Sbjct: 282 YLGAREITSLFVEGGGTVNWSFLAGDYVDKVHAFIAPMLMGGTAAKTPVGGTGFDSPQTA 341
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L L D+ EQ+G D L++G+L
Sbjct: 342 LHLHDVTVEQLGADFLVTGYL 362
>gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
Length = 357
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 33/378 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+++A ++A K GF +P+P G +I GKV G+GY A G AEV A+
Sbjct: 9 YMKQAFNLAIKGEGFVNPNPLVGAVI-IKDGKVIGKGYHKAFGQVHAEVDAINHATEDVA 67
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT ++ +EP HG + L++ GI V + +P + Q V+ L G++VH
Sbjct: 68 GATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVHY 127
Query: 167 -LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ +DL K VN H T++ PF KYAMTLD GK+
Sbjct: 128 GILDDLGLK-----------VNDIFFHYITTKRPFVAMKYAMTLD------------GKL 164
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLT 284
A + WI++K SR V DLR + A++VG NT+ +D+ +L R P+RI+L
Sbjct: 165 ATKDFDSKWITNKKSRKYVHDLRNKYSAILVGVNTIIKDDAKLDVRRSKKSKNPVRIILD 224
Query: 285 QTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
L P+ + + PT +V++ + + GV++++ ++ +M +
Sbjct: 225 PKLQTPKSTYVVKTAKTQPTWIVSET-----YDQSYVDLGVKIIQMPTIDLDKLMTILGE 279
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
SI E G AS + + L++KV+AF+APKIIGGKNA TP+ G+ M A L
Sbjct: 280 AKIDSIFIEGGAYTHASFLEANLVNKVYAFIAPKIIGGKNALTPIGGEGVSLMKDAHVLK 339
Query: 404 DICYEQVGPDMLISGFLQ 421
D+ Y Q D+LI G+ +
Sbjct: 340 DVTYTQFDEDILIEGYFK 357
>gi|357040471|ref|ZP_09102258.1| riboflavin biosynthesis protein RibD [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356562|gb|EHG04348.1| riboflavin biosynthesis protein RibD [Desulfotomaculum gibsoniae
DSM 7213]
Length = 370
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 197/386 (51%), Gaps = 33/386 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y++ A ++A ++ G T+P+P G ++ G V G GY GT AEV A+
Sbjct: 3 AGDQHYMQMALELAARAMGRTTPNPMVGAVVVKD-GHVVGRGYHARAGTPHAEVHALREA 61
Query: 103 GSFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G GA Y+ +EP CH T A+++A I RVV+ + +P + G+ ++ L
Sbjct: 62 GDLAGGAVLYVTLEPC-CHHGRTGPCTDAIIKAQIGRVVLAMTDPNPLVAGKGIQKLTEA 120
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V + E+AR+ +N I T+R+P+ V K AM+LD
Sbjct: 121 GVHVDC------GVLEEDARR----LNEVFIKYITTRLPYVVMKTAMSLD---------- 160
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GKIA + G + WI+ +R+ V LR R DA++VG TV D+P LT R GGG P
Sbjct: 161 --GKIATAKGESQWITGNAAREFVHRLRDRYDAILVGVGTVLADDPSLTTRLPEGGGKDP 218
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-D 336
+RI+L PE A + S+APTI+VT GA + + L G V+E D
Sbjct: 219 VRIILDSKARTPETARVITQSSEAPTIIVTTPGAPPERVRLLREAGARVLEVTGGEGGID 278
Query: 337 VMEYFHDRG---YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ H+ G +L E G + S I+ L+ KV F+APK+IGG++AP PV + G+
Sbjct: 279 LGVLLHELGRREITGVLVEGGARVNGSFITCNLVDKVNWFIAPKLIGGESAPGPVGDPGI 338
Query: 394 VEMSQALDLIDICYEQVGPDMLISGF 419
+ AL + DI + G D+ + G+
Sbjct: 339 TALQDALPIKDIKLHRYGEDICVEGY 364
>gi|408420817|ref|YP_006762231.1| riboflavin synthesis protein D RibD [Desulfobacula toluolica Tol2]
gi|405108030|emb|CCK81527.1| RibD: riboflavin synthesis protein D [Desulfobacula toluolica Tol2]
Length = 365
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 205/387 (52%), Gaps = 34/387 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A K GFTSP+P G ++ G+V G+G+ A G AEV+A++ G
Sbjct: 3 DNDYMSLAISLAGKGKGFTSPNPCVGAVVVKD-GRVVGKGFHRAAGLAHAEVEAIDDAGY 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP + G + ++ AGI +VVVG ++P ++ G + LR G++
Sbjct: 62 MAKGATIYVTLEPCNHFGKTPPCTHKIINAGIKKVVVGCKDPNPNVCGGGIAYLRDNGIE 121
Query: 164 V--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
V VL ++ Q+ +IEE + + ++ PF + K A TLD
Sbjct: 122 VVTGVLQKEAQA-LIEEF----------IWYVQNNKTPFVILKCASTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PM 279
G+IA ++G + WI+++ SR V +R + DA++VG T+ DNP LT+R G T P+
Sbjct: 160 -GRIATATGDSKWITNEKSRVFVHKIRHQVDAILVGSGTLHADNPSLTSRIEGVQTKDPV 218
Query: 280 RIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNS 334
RI+L L + E+AN L S+A TI+VT GA ++ + + S+G +++E + L+
Sbjct: 219 RIILDTHLTIKEDANVLTQKSNAKTIIVTGTGASKEKRALIESKGAQILEVSLKQEKLDL 278
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++M LS+L E G +A SA+ +G+++KV F+APK +G + G
Sbjct: 279 NELMIKLGKMSILSLLIEGGSVVAGSALKAGIVNKVLFFLAPKFLGSDDGIPVFQGKGPK 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
+ A +L DML+ G+L
Sbjct: 339 LIKDAFELKKSTVTLFDTDMLVQGYLN 365
>gi|422346938|ref|ZP_16427851.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
WAL-14572]
gi|373225555|gb|EHP47888.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
WAL-14572]
Length = 366
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G+ +R LR G+
Sbjct: 61 SIEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V+V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVNV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI+++ SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKEFKSKWITNRKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLYAFEFPEVNLKNFDEDILIE 361
>gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
Length = 350
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 187/365 (51%), Gaps = 31/365 (8%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RG T Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
++ ++ PF K +TLD GKIA + WI+S
Sbjct: 122 FNKYIM----------TKRPFVTIKSGVTLD------------GKIATFLSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+R++L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDE 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-----LNSRDVMEYFHDRGYLSILWECG 354
+APT + T + +K L S GV+V F I +N ++++ +G S+L E G
Sbjct: 220 EAPTWIFTTSNHAAEKRKALESAGVKV--FVISGEKHINLYEMLDVLGQKGVSSLLIEGG 277
Query: 355 GTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDM 414
G + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ DI + QVG D
Sbjct: 278 GEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 337
Query: 415 LISGF 419
G+
Sbjct: 338 RFIGY 342
>gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
20544]
gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
20544]
Length = 363
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 194/382 (50%), Gaps = 29/382 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++R A ++A + G TSP+P G +I G++ G+ GT AE+ A+ G
Sbjct: 2 QDEEFMREALELARNAEGRTSPNPMVGAVIVQG-GRIVAAGWHRKAGTPHAEIHALRMAG 60
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G A+V+AGI R V+ +++P + G+ ++ L G+
Sbjct: 61 ELAKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
E + + EEAR+ +N + ++PF K AMTLD
Sbjct: 121 ------ETVCGVLEEEARR----LNEVFLKWVPEKIPFVALKTAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +G + WI+++TSR RV + R R D + VG TV D+P LT R G G P+R
Sbjct: 159 GKIATRTGESQWITNETSRRRVHEYRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVR 218
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDV 337
I++ P A + A TIV A + + L + GVEVV ++ R +
Sbjct: 219 IIVDSQARTPLTAKVVCDGQAKTIVAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRAL 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M+ R S+ E GG + S + +GL+ KV+AF+APK+IGG A TPV G +
Sbjct: 279 MQMLGQREICSVFVEGGGRVNFSLLRAGLVDKVYAFIAPKLIGGSEALTPVEGEGFAALK 338
Query: 398 QALDLIDICYEQVGPDMLISGF 419
++L I E++ D+L++ +
Sbjct: 339 DCVELSGIQVEEMAGDILLTAY 360
>gi|410461189|ref|ZP_11314841.1| riboflavin biosynthesis protein RibD [Bacillus azotoformans LMG
9581]
gi|409925974|gb|EKN63172.1| riboflavin biosynthesis protein RibD [Bacillus azotoformans LMG
9581]
Length = 364
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 29/377 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A ++A + G TSP+P G ++ ++ G G G AEV A+ G
Sbjct: 3 DQDYMRLAIELAANTNGQTSPNPLVGAVVVKEN-QIVGMGAHLKAGEPHAEVHAINMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP HG L+++ + RVV+ +P + G+ + LR G++
Sbjct: 62 KAKGATIYVTLEPCSHHGRTPPCADLLIKSEVKRVVIASTDPNPLVAGKGIEKLRKAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA + +N H ++ +P+ K A +LD G
Sbjct: 122 VDV------GILREEAEQ----LNEVFFHYISTGMPYVTLKSATSLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA SG + WI+S+ SR V R + D ++VG NT+ +D+P LT R GG P+RI+
Sbjct: 160 KIATVSGESKWITSEESRLDVHKYRHQHDGILVGVNTIIKDDPELTTRLPLGGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVE--FDILNSRDVME 339
L L P A + + + APT I+V + A K Q + + +V+E FD LN +V++
Sbjct: 220 LDTNLRTPPGAKIVNDNKAPTWIIVGKNAAAEKIQ-TMNEKQAQVIEMSFDTLNIHNVLK 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
++G S+ E G + S I + I++V ++APKIIGG +APT + G +M++
Sbjct: 279 LLAEKGITSLFVEGGSQINGSFIKAKAINQVITYIAPKIIGGTSAPTSIGGEGFEKMNEV 338
Query: 400 LDLIDICYEQVGPDMLI 416
L L E +GPD+ I
Sbjct: 339 LSLQIKSIETIGPDIKI 355
>gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
gi|149751955|gb|EDM61886.1| riboflavin biosynthesis protein RibD [Dorea longicatena DSM 13814]
Length = 378
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 196/385 (50%), Gaps = 39/385 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+T+P+P G +I G++ GEGY G AE A+ +
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GRIIGEGYHKKCGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ I +VV+G R+P + G+ + LR G+
Sbjct: 62 SAEGATIYVTLEPC-CHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V + + R+ C +N H T++ P+ V KYAMTLD
Sbjct: 121 TV----------VQDFMREECDCLNPVFFHYITTKTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ + +R V +R R ++ G TV D+P L R G +P+RIV
Sbjct: 159 GKIATKTGASKWITGEPARQEVQHMRHRYMGIMAGIGTVLADDPMLNVRVEGWKSPVRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQ-----KYLASRGVEVV----EFDILN 333
+L +P ++ + + +V G + + L ++GV+ V E ++
Sbjct: 219 CDSSLRIPLDSQIVRSAKEYRTIVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQID 278
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M Y + G SIL E GGTL SA+ +G++ +V F+APK+ GGKN+ TPV +G+
Sbjct: 279 LKKLMTYLGNEGIDSILLEGGGTLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQGIGI 338
Query: 394 VEMSQALDL--IDICYEQVGPDMLI 416
S+AL L DIC ++G D+ I
Sbjct: 339 GLPSEALKLKCTDIC--RIGEDIRI 361
>gi|374581513|ref|ZP_09654607.1| riboflavin biosynthesis protein RibD [Desulfosporosinus youngiae
DSM 17734]
gi|374417595|gb|EHQ90030.1| riboflavin biosynthesis protein RibD [Desulfosporosinus youngiae
DSM 17734]
Length = 373
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 207/383 (54%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++RRA ++A K+ G TSP+P GC+I ++ GEGY + GT AEV A+ A G
Sbjct: 10 KDEQFMRRALELAAKATGRTSPNPLVGCVIVKD-NEIIGEGYHHKAGTPHAEVHALAAAG 68
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP G AL++A + RVVV +++P + GQ LR G+
Sbjct: 69 DQASGATAYVTLEPCSHFGRTPPCADALIRANVKRVVVAMQDPNPLVSGQGTERLREAGI 128
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV DL + EA ++ N + T+ +PF V+K AMTLD
Sbjct: 129 QV-----DL-GVLQHEAERT----NEIFLKSITTGLPFIVYKTAMTLD------------ 166
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + W+S+++SR V LR D ++VG TV +DNP LT R G P+R++
Sbjct: 167 GKIATETGDSRWVSNESSRHYVHQLRDAYDVILVGSETVIQDNPALTCRLPHGKDPVRLI 226
Query: 283 LTQTLNLPEEANLWDVSD-APTIVVTQRGA-RRKFQKYLASRGVEVVEFDILNSRDVMEY 340
+ L L E+A + S +P I+ T A K Q+ + VEV ++ + +
Sbjct: 227 VDGKLRLEEKAQVLTSSKHSPCIIATTLAASSEKVQRLQSLERVEVWQYKTERHVPLEKL 286
Query: 341 FHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
D RG++S+L E GG LA + + + LI K F+APK +GG P+P+S L + MS
Sbjct: 287 LRDLVLRGWISVLLEGGGGLAGTLLQNKLIDKAELFIAPKFVGG-TGPSPLSGLHIKAMS 345
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
+A+ L ++ ++ D+ ++G++
Sbjct: 346 EAVTLDNLSFDMHTGDLHVTGYI 368
>gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mahella
australiensis 50-1 BON]
gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mahella australiensis 50-1 BON]
Length = 363
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 197/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+++RA ++A G T+P+P G +I G++ GEGY G AE+ A+ G R
Sbjct: 6 FMQRALELARMGWGTTNPNPMVGAVIVKG-GRIIGEGYHKKAGEPHAEINALREAGEGAR 64
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+T Y+ +EP G ALV+AG+ VV+ + +P + G+ + ALR G++V
Sbjct: 65 GSTVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKV-- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + +EAR+ +N I TS +PF ++K AMTLD GKIA
Sbjct: 123 ----ITGIMEQEARR----LNEVFIKYITSDMPFVIWKCAMTLD------------GKIA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---GGGHTPMRIVL 283
++G + WI+++ SR V R R AV+ G TV D+P LT R P+RI+
Sbjct: 163 TANGDSKWITNELSRQYVHWWRYRVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIA 222
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV---MEY 340
P ++N+ ++ APTI+ T A + S+G +V+ D + D+ M
Sbjct: 223 DSLAKTPLDSNVLNIEQAPTIMATSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRE 282
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
H R S+L E G TLAASAI GL+ K F+APK+IGGK + +S G+ M+ A
Sbjct: 283 LHKREIDSVLIEGGPTLAASAIEEGLVDKAMVFIAPKLIGGKGL-SALSGNGIARMADAW 341
Query: 401 DLIDICYEQVGPDMLISGFLQ 421
L + ++ D+LI G+L+
Sbjct: 342 QLSGVSVKRFEDDVLIEGYLK 362
>gi|421074218|ref|ZP_15535258.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans JBW45]
gi|392527724|gb|EIW50810.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans JBW45]
Length = 376
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 197/383 (51%), Gaps = 29/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ +A +A + G TSP+P G +I G+V GEG+ GT AE+ A++ G
Sbjct: 2 DEKYMGQALALAQYAKGRTSPNPMVGAVIVRD-GRVVGEGWHRKAGTPHAEINALQQAGD 60
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
A+ Y+ +EP HG V AL+ AGI +V++ + +P + GQ + LR G++
Sbjct: 61 LAYNASIYVTLEPCSHHGRTGPCVEALIAAGIKKVIIAMTDPNPLVAGQGISKLREAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + +EA K +N I +++ PF + K AM+LD G
Sbjct: 121 V------IEGVLAKEAAK----LNETFIKWISTKKPFVLLKSAMSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +GH+ WI+ SR V LR DA++VG TV DNP LT R G P+R+V
Sbjct: 159 KIASYTGHSKWITGVESRIYVHQLRDTYDAILVGIGTVLADNPTLTTRLAYQGKNPIRVV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
+ P +N+ A T++ A ++ L + GVEV+E + +N +
Sbjct: 219 VDSMARTPIHSNVVTDGLARTMIAVTDKAPQEKIDALRAYGVEVIECEKTPAGVNLSHLF 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ S L E G + AS + L+ K+ F+APKIIGG +AP PV G+ +++
Sbjct: 279 KILGEQQITSTLIEGGAAINASVLEDNLVDKINWFIAPKIIGGVDAPGPVGGKGIADVND 338
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A DI E +G D+LIS +L+
Sbjct: 339 AKGFEDIHMEAIGEDILISAYLR 361
>gi|392960516|ref|ZP_10325984.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans DSM
17108]
gi|421054727|ref|ZP_15517692.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans B4]
gi|421061737|ref|ZP_15524012.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans B3]
gi|421063787|ref|ZP_15525733.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans A12]
gi|421071590|ref|ZP_15532706.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans A11]
gi|392440408|gb|EIW18088.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans B4]
gi|392446855|gb|EIW24126.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans A11]
gi|392447580|gb|EIW24814.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans B3]
gi|392455093|gb|EIW31900.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans DSM
17108]
gi|392462357|gb|EIW38452.1| riboflavin biosynthesis protein RibD [Pelosinus fermentans A12]
Length = 376
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 197/383 (51%), Gaps = 29/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ +A +A + G TSP+P G +I G+V GEG+ GT AE+ A++ G
Sbjct: 2 DEKYMGQALALAQYAKGRTSPNPMVGAVIVRD-GRVVGEGWHRKAGTPHAEINALQQAGD 60
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
A+ Y+ +EP HG V AL+ AGI +V++ + +P + GQ + LR G++
Sbjct: 61 LAYDASIYVTLEPCSHHGRTGPCVEALIAAGIKKVIIAMTDPNPLVAGQGISRLREAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + +EA K +N I +++ PF + K AM+LD G
Sbjct: 121 V------VEGVLAKEAAK----LNETFIKWISTKKPFVLLKSAMSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +GH+ WI+ SR V LR DA++VG TV DNP LT R G P+R+V
Sbjct: 159 KIASYTGHSKWITGAESRIYVHQLRDTYDAILVGIGTVLADNPTLTTRLTYQGKNPIRVV 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
+ P +N+ A T++ A ++ L + GVEV+E + +N +
Sbjct: 219 VDSMARTPIHSNVVTDGLARTMIAVTDKAPQEKIDTLRACGVEVIECEKTTAGVNLSHLF 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ SIL E G + AS + L+ K+ F+APKI+GG +AP PV G+ +++
Sbjct: 279 NILGEQQITSILIEGGAAINASVLEDNLVDKINWFIAPKIVGGADAPGPVGGKGIADVND 338
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A DI E +G D+LIS +L+
Sbjct: 339 AKGFEDIHMESIGKDILISAYLR 361
>gi|302392186|ref|YP_003828006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acetohalobium arabaticum DSM 5501]
gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acetohalobium arabaticum DSM 5501]
Length = 371
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A K G TSP+P G +I G++ G+GY +A G AEV A++
Sbjct: 7 DIDYMRLALDLAAKGRGRTSPNPMVGAVIVKD-GEIVGQGYHHAAGKPHAEVNALQDAAD 65
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
AT Y+ +EP +G AL+ AG++RVV +++P + G+ ++ L G++
Sbjct: 66 KTEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLADAGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +S ++EE K +N I T+ PF + K AMTLD G
Sbjct: 126 V-------ESGLLEEEAKE---LNEAFIKYITTERPFVILKNAMTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA +G + WIS + SR V LR D ++VG TV DNPRLT R G P+RI
Sbjct: 164 KIATKTGDSKWISGEESRRYVHRLRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRI 223
Query: 282 VLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVME 339
VL L +P ++NL S+A T+V A + L GVEV+ R D+
Sbjct: 224 VLDSRLEIPLDSNLVTQESEAKTVVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDS 283
Query: 340 YFHDRG---YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ G +S+L E G + S + + L+ K+ F+APK+IGG A V G+ ++
Sbjct: 284 LLAELGRMEIMSLLVEGGSRINTSFLFTELVDKILYFIAPKLIGGSEAVQAVGGQGVDKV 343
Query: 397 SQALDLIDICYEQVGPDMLISGF 419
+ ++L D +G D+LI G+
Sbjct: 344 ADGIELGDYELSTIGNDILIVGY 366
>gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 3502]
gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 19397]
gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
Hall]
gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clostridium botulinum A str. ATCC 3502]
gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 19397]
gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
Hall]
Length = 365
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 196/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A++ G +P+P G ++ + K+ GEGY G AEV A++ G +
Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVNNN-KIIGEGYHKYFGGPHAEVYALKEAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 124 -----ITGIMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG T+ +DNP L R G +P I++ +
Sbjct: 164 TKTGESKWITGEEARYKVHQIRNDLSGIMVGIGTIIKDNPLLNTRIERGRSPKAIIVDSS 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKY--LASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + TI + F K L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETLNERTIYIATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLGSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 360
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ G RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E ++ ++ PF K +TLD GKIA
Sbjct: 120 VCEEKSKKMNEVFNKYIM----------TKRPFVTIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
S + WI+S +R V +R + A++VG NTV++DNP LT R G P+R++L TL
Sbjct: 158 SLSDSKWITSTEARQEVHKIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EAN+ +APT + T + +K L S GV+V +N ++++ +
Sbjct: 218 RIPMEANVVTDGEAPTWIFTTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + VG D G+
Sbjct: 338 ISFTPVGKDYRFIGY 352
>gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
Length = 363
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 195/376 (51%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A + G T P+P G +I ++ G G G AE+ A+ G +
Sbjct: 7 YMNIALQNAKATKGQTDPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGEQAK 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP HG ALV+AG+ +VV+ +P + G V+ L + G++V
Sbjct: 66 GATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+R+ + N ++ ++ PF K A+TLD GKIA
Sbjct: 124 ----ITGVCEEESRQMNEVFNKYIV----TKKPFVSLKSAITLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+S H+ WI+S+ +R V LR + ++VG NTV +DNP LT R GG +P+RIV+
Sbjct: 164 TASSHSKWITSEEARLDVHQLRHETAGILVGVNTVIKDNPELTTRIEGGRSPIRIVMDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF---DILNSRDVMEYFHD 343
L +P E+ L S APT V T +G ++ ++ L +GVEV D +N D++ +
Sbjct: 224 LRMPLESKLATDSLAPTWVFTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+ S+L E GG + A+ + + LI K+ ++APK+ GGK APT + G+ +M A+D+
Sbjct: 284 KFVSSLLIEGGGEVNAAFLENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVE 343
Query: 404 DICYEQVGPDMLISGF 419
+ +G D G+
Sbjct: 344 RLSVTSIGKDFKFVGY 359
>gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
Alaska E43]
gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
Alaska E43]
Length = 366
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 205/384 (53%), Gaps = 28/384 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y+ A ++A K G +P+P G LI ++ G GY G AEV A+
Sbjct: 5 NEKYMELALELAKKGEGKVNPNPLVGALIVKDN-EIIGSGYHEKYGEAHAEVNAINNATK 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G V +++ I +V++G+ +P + G++++ L+ ++
Sbjct: 64 SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLKDNDIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G +EE + C +N I TS +PF + K A++LD G
Sbjct: 124 V-IVG-------VEEEK--CKKINESFIKYITSNLPFVILKSAISLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S G + WI+S+ SR LR + A++VG NT+ DNP LT R G P+R+++
Sbjct: 162 KIATSIGESKWITSEESRRDGHLLRNKLSAIMVGINTIIEDNPELTCRIENGKNPIRVIV 221
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFH 342
L +P ++ + + SD TIV T + A + ++ L ++GV V+E + N + D+ E
Sbjct: 222 DSNLRIPLKSKVVNNSDKLTIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMR 281
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G L SIL E GGTL SA+ ++ KV ++APKI+GG+ + + + G ++S A
Sbjct: 282 CLGTLKIDSILIEGGGTLNFSALEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDA 341
Query: 400 LDLIDICYEQVGPDMLISGFLQPI 423
+ L ++ YE++ D++I G++ +
Sbjct: 342 VKLKELTYEKLSEDIVIEGYINKL 365
>gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str.
13]
gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13]
Length = 366
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKD-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G+ ++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI+++ SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKEFKSKWITNRKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKNFDKDILIE 361
>gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
Length = 367
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 198/381 (51%), Gaps = 33/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A D A G T P+P GC++ G++ G G G AE+ A+ GS +
Sbjct: 5 YMRLALDNAKAMKGQTDPNPLVGCVL-VKEGRIIGVGAHLKAGEAHAEINALRMAGSEAK 63
Query: 108 GATAYLNMEPGDC-HGDHTAVSA--LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
G+TAY+ +EP C H T A LV+AG+ V++ +P + G VR L G V
Sbjct: 64 GSTAYVTLEP--CSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGG--V 119
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
HV Q+ I+E K + +N + +R+P+ K A++LD GK
Sbjct: 120 HV-----QTGILE---KEAVQLNDVFNYSIVNRMPYVTLKAAVSLD------------GK 159
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IAA SG + WI+S +R V LR + A++VG +TV +DNP LTAR G P+R+++
Sbjct: 160 IAAKSGDSKWITSSEARQDVHRLRSENQAIIVGVDTVLKDNPSLTARIANGRNPIRVIVD 219
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARR--KFQKYLASRGVEVVEFD---ILNSRDVME 339
L P +A + APT + T R + Q+ L GV +V+ ++ +++M
Sbjct: 220 SHLRTPVDAIVTTDGLAPTWIFTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMA 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y + S L E GGTL A+ + + L+ K+ +VAPK+IGG APT + G+ +M+ A
Sbjct: 280 YLYKESISSALLEAGGTLNAAFLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDKMADA 339
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L L Q+GPD+ ++ ++
Sbjct: 340 LPLAFSEATQIGPDLKLTAYV 360
>gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
str. 657]
gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
str. 657]
Length = 365
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 197/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ + +A++ G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKTLKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + +V+ GI++ ++ +++P + G+ + L+ G++V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 124 -----VTEIMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG +TV +D+P LT R GG +P I++
Sbjct: 164 TRTGESKWITGEEARHKVQQIRNDLSGIMVGIDTVIKDDPLLTTRIEGGRSPKAIIVDSN 223
Query: 287 LNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV-----ME 339
L +P E+ + + A I T++ + L + G +V+EF+ V ME
Sbjct: 224 LRIPLESKILETLSKRAIYIATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLME 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ K+ F+APKI+GG+++ T + G+ +
Sbjct: 284 YLGTEGVDSILLEGGSTLNFSALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|403071155|ref|ZP_10912487.1| Riboflavin biosynthesis protein [Oceanobacillus sp. Ndiop]
Length = 364
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A A G T P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 DDTFYMDLALKNAQAMKGQTDPNPLVGAVIVNDN-RIVGVGAHLKAGEPHAEIHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP HG + ALV+AGI++VV+ +P + G V L+ G+
Sbjct: 62 EQAKGATIYVTLEPCSHHGRTGPCAVALVEAGISKVVIATLDPNPIVAGNGVNILKDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V S ++E+ + +N + PF K +TLD
Sbjct: 122 EV-------ISGVLEQ---ESIQMNEVFNKFIMKKKPFITLKSGITLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK+A+ + H+ WI+S+ +R V LR A++ G NTV +DNP LTAR G P+RIV
Sbjct: 160 GKVASHTFHSKWITSEEARYDVHQLRSEHMAILTGINTVIKDNPALTARIPNGRNPIRIV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF---DILNSRDVME 339
+ +L +P +A + + A TI+ T + + +K L + VVE N +V +
Sbjct: 220 MDSSLRIPFDAQVITDNKAETIIFTSQNYDKTKRKSLEKLHINVVETSGQQYTNPIEVAD 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y +RG S+L E GG + AS I + L+ K+ ++AP++IGGK+APT + +G+ +MS A
Sbjct: 280 YLGERGISSLLIEGGGNINASFIENKLVDKIVLYIAPRLIGGKDAPTFLEGIGIDQMSDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
++L ++GPD G+
Sbjct: 340 IELETTDIHRIGPDFKFVGY 359
>gi|402572985|ref|YP_006622328.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfosporosinus meridiei DSM 13257]
gi|402254182|gb|AFQ44457.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfosporosinus meridiei DSM 13257]
Length = 372
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 205/390 (52%), Gaps = 34/390 (8%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S + D ++RRA ++A K+ G TSP+P GC++ ++ GEG+ GT AEV A+
Sbjct: 7 STSSDEQFMRRALELAAKAVGRTSPNPLVGCVLVKD-NQIIGEGFHLKAGTPHAEVHALS 65
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G G+TAY+ +EP G AL++A I RVVV + +P + GQ + LR
Sbjct: 66 TAGDQANGSTAYVTLEPCSHFGRTPPCADALIRAKIKRVVVAMMDPNPLVAGQGLDRLRE 125
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+QV DL +E R +N I ++ +PF ++K AMTLD
Sbjct: 126 AGIQV-----DLGLMNLEAQR-----LNEVFIKAISTGLPFVIYKSAMTLD--------- 166
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR LR D ++VG TV +DNP LT R G P+
Sbjct: 167 ---GKIATETGDSRWISNEISRKFAHQLRSYCDVILVGSETVHKDNPALTCRSINGKDPI 223
Query: 280 RIVLTQTLNLPEEANLWDVSDAP--TIVVTQRGARRKFQKYLASRGVEVVEFDI-----L 332
R+++ +L + E A + S A I T ++ K ++ + V+V ++D L
Sbjct: 224 RLIIDGSLRINENAKVLTSSTASHCIIATTLSASKEKIKRLDSLPRVDVWQYDTERYVPL 283
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N +M + S+L E GG LA + + L+ KV F+APK++GG N P+P+S L
Sbjct: 284 NK--LMRDLVRNSWTSVLLEGGGGLAGAMLQENLVDKVELFIAPKLVGG-NGPSPLSGLH 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQP 422
+ M++A++L D+ + D+ ++G++QP
Sbjct: 341 IERMAEAINLNDLSVDMSTGDLHVTGYIQP 370
>gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
str. ATCC 3626]
gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
str. ATCC 3626]
Length = 365
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 197/384 (51%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ ++ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGQGYHEFFGGNHAEINSINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ + RVVVG +P + G++++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI+++ SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKEFKSKWITNRKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKNFDKDILIE 361
>gi|422873144|ref|ZP_16919629.1| riboflavin biosynthesis protein RibD [Clostridium perfringens F262]
gi|380306022|gb|EIA18298.1| riboflavin biosynthesis protein RibD [Clostridium perfringens F262]
Length = 365
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKD-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G++++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI++K SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKDFKSKWITNKKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + +++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQNESRTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKNFDKDILIE 361
>gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
27755]
gi|166029624|gb|EDR48381.1| riboflavin biosynthesis protein RibD [Dorea formicigenerans ATCC
27755]
Length = 377
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 196/383 (51%), Gaps = 36/383 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA ++A K G+T+P+P G +I G++ GEGY G AE A+ +
Sbjct: 5 DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKD-GRIIGEGYHARCGELHAERNAIASLTE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ I +VV+G R+P + G+ + LR G+
Sbjct: 64 SAEGATLYVTLEPC-CHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGV 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R C +N H T++ P+ V KYAMTLD
Sbjct: 123 AVV---EDFM-------RDKCDELNPIFFHYITTKTPYVVMKYAMTLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ + +R V +R R ++VG TV D+P L R G +P+RI+
Sbjct: 161 GKIATKTGASKWITQEAARREVQYMRHRYMGIMVGIGTVLADDPMLNVRVEGLKSPVRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKYLASRGVEVVEF-DI---LNSRD 336
L +P ++ + + +V K ++ L + GVE+V D+ +N +
Sbjct: 221 CDSKLRIPLDSQIVKSAREYRTIVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKH 280
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+MEY SIL E GGTL SA+ +G++ +V AF+APKI GG + TPV +G+
Sbjct: 281 LMEYLGKENIDSILLEGGGTLNDSALRAGVVQEVQAFIAPKIFGGAGSRTPVDGIGIELP 340
Query: 397 SQA--LDLIDICYEQVGPDMLIS 417
SQA L DIC Q+G D+ I+
Sbjct: 341 SQAAVLKFKDIC--QIGEDLKIT 361
>gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
DSM 771]
gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
DSM 771]
Length = 367
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 198/390 (50%), Gaps = 38/390 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A ++ G TSP+P G +I G V G GY GT AE+ A++ G
Sbjct: 2 DEQYMKMALDLAARARGRTSPNPMVGSVI-VKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP CH T A++ AGI R VV + +P + G+ + LR G+
Sbjct: 61 AARGATIYVTLEPC-CHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGV 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + + EEA K +N I ++ +PF + K AM+LD
Sbjct: 120 EV------VSGLLAEEAAK----LNEVFIKYVSTGMPFVLLKTAMSLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGH 276
GKIAA +GH+ WI+ SR V LR DA+++G T+ DNP LTAR G
Sbjct: 158 GKIAAYTGHSRWITGSASRAYVHHLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGK 217
Query: 277 TPMRIVLTQTLNLPEEAN-LWDVSDAPTIV-VTQRGARRKFQKYLASRGVEVVEFDILNS 334
P+R+++ P EA L +S APTI+ +T + QK +A+ G +++
Sbjct: 218 DPVRVIVDSLARTPPEAKVLTQISAAPTIIAITAAAPEERVQKLVAA-GAQIIIAGNGPK 276
Query: 335 RDVMEYFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
D+ F + SIL E G + AS + L K+ F+APKIIGGK AP PV
Sbjct: 277 IDLPYLFKSLTAIDITSILIEGGAAVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGR 336
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G+ +S+AL L I ++ D+ + G+L+
Sbjct: 337 GVAAVSEALLLERISVQRFEEDICLEGYLR 366
>gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Kyrpidia tusciae DSM 2912]
gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Kyrpidia tusciae DSM 2912]
Length = 371
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 196/387 (50%), Gaps = 34/387 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A +A + G TSP+P G +I G++ G+G G AEV A+ G
Sbjct: 3 DEDWMRWALQLAASARGQTSPNPMVGAVI-VKDGELVGQGAHLKAGGPHAEVHALRMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP D HG S AL++ G+ RVVV + +P + G +R LR G++
Sbjct: 62 KARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVK 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E K +N I R T P+ + K AMTLD
Sbjct: 122 VEV-------GLLE---KDARALNRGFIQRMTRGRPWVIAKIAMTLDA------------ 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---HTPMR 280
+IA +G + WI+ + +R++V +LR R DAVV G TV D+PRLTAR GG P+R
Sbjct: 160 QIATRTGESRWITGEKAREKVHELRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLR 219
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDI-----LNS 334
+VL L +P +A + APT+V RG A + LA+RGV+V D L+
Sbjct: 220 VVLDSRLRIPADAQILSTVSAPTVVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDL 279
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
R V + G + L E GG L S SGL+ +V F+APK++ G P E G+
Sbjct: 280 RQVFGRLGEAGVNTALVEAGGRLQGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGE-GVE 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
++Q+ L E VG D+ ++ ++
Sbjct: 339 RLAQSAQLEITGVETVGEDLKVTALVR 365
>gi|424835167|ref|ZP_18259837.1| riboflavin biosynthesis protein RibD [Clostridium sporogenes PA
3679]
gi|365978294|gb|EHN14386.1| riboflavin biosynthesis protein RibD [Clostridium sporogenes PA
3679]
Length = 364
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 196/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A K G + +P G ++ K+ GEGY G AEV A+ G +
Sbjct: 7 YMGKALKLAKKGEGKVNSNPKVGAIVIKDN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G A+V+AGI +VV+ +++P ++G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAEAIVKAGIAKVVIAMKDPNSLVQGRGIGILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKE---LNEVFIKYITKKEPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
G + WI+ + SR RV R ++VG T+ +DNP LT R G +P I++ +
Sbjct: 164 TKKGESRWITGEESRYRVHQTRNDLSGIMVGIGTILKDNPLLTTRIEEGRSPKAIIVDSS 223
Query: 287 LNLPEEANLWDVSDAPTI-VVTQRGARRKFQKY-LASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + TI + T + +K L + G++++EF+ + +++
Sbjct: 224 LKIPLESKILETINERTIYIATTKKHNNPLKKNNLENLGIKILEFEENEEGKVPLKKLIQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y SIL E G TL SA+ G++ KV F+APKIIGG+++ T + G+ +
Sbjct: 284 YLGKEEIDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIIGGQDSKTMIGGTGVDNLKDM 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L ++ +E++G D+LI G++
Sbjct: 344 FKLQNLNFEKIGEDILIEGYI 364
>gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [Chlorobium ferrooxidans DSM 13031]
gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [Chlorobium ferrooxidans DSM 13031]
Length = 369
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 198/393 (50%), Gaps = 41/393 (10%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE-- 100
+D Y+ R ++A K G SP+P G +I G + GEG+ G AEV A+
Sbjct: 6 CDDTVYMNRCIELALKGGGTVSPNPMVGSVIVCD-GVIIGEGFHERYGAPHAEVNAIASV 64
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRS 159
A R +T Y+N+EP G S L+ + GI RVVVG R+P + G+ + L
Sbjct: 65 ADQELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAKLLG 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+ V ++E A C+ +N I T+ +PF K A TLD
Sbjct: 125 AGIAV-------TEGVLEAA---CVKLNEAFIKSHTTGLPFVSLKLAETLD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA S G + WI+ + +R V LR R DAVVVG TVR D+ LT RH G P+
Sbjct: 166 ---GKIATSLGASKWITGEAARMEVHRLRARYDAVVVGEATVRCDDAELTVRHCSGRNPL 222
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQK--YLASRGVEVV-------EFD 330
R+VL + L+LP E+ +++ ++APTI+ A +K L RGV V+ E D
Sbjct: 223 RVVLDRRLSLPVESKIFN-TEAPTILFAS-SAWEGLEKAGLLRERGVTVLFVREHAGELD 280
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ R V+E H G LSIL E G L+AS I L+ K++ F+APK+ GG +A + +
Sbjct: 281 L---RQVLEELHKHGILSILVEGGSRLSASFIRERLVDKIYMFIAPKLFGG-DALSSFAP 336
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
LG+ A+ L G D+L+ ++Q +
Sbjct: 337 LGISIPDDAVVLKFETPRFFGSDLLLEAYVQSL 369
>gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
5_1_63FAA]
Length = 366
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 197/378 (52%), Gaps = 32/378 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+RRA ++A K G+T+P+P G +I KV GEGY G AE A++ +
Sbjct: 5 YMRRAIELAKKGCGYTNPNPLVGAVIVKDQ-KVIGEGYHEKIGGLHAERNALKNCIEDPK 63
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GA Y+ +EP CH T AL++AGI +V VG +P + G ++ L G++
Sbjct: 64 GAEIYVTLEPC-CHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIET- 121
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
++ I+EE C +N H + +P++ KYAMTLD GKI
Sbjct: 122 ------ETGILEE---ECRQLNDIFFHYIQNDIPYTALKYAMTLD------------GKI 160
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A ++G + WI+ + +R V LR + A++ G TV D+P L AR G+ P+R++
Sbjct: 161 ATATGESKWITGEEARRHVHTLRHQYAAIMAGIGTVLADDPMLNARIEHGNDPIRVICDS 220
Query: 286 TLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEY 340
L + E +N+ + + PTI+ T + K K L +G ++++ +N ++V++
Sbjct: 221 NLRISEGSNIVKTAREIPTIIATISKDQEKIAK-LEQKGCKILKTSEQDGKVNVKEVLKQ 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ S+L E GG L S I + +HKV+A++APK+ GG+ A TPV G+ + +AL
Sbjct: 280 LRNMEIDSVLVEGGGILNESLIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEAL 339
Query: 401 DLIDICYEQVGPDMLISG 418
++ +G D+L+ G
Sbjct: 340 VFDELKATPLGNDILLEG 357
>gi|392374484|ref|YP_003206317.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino) uracil reductase
[Candidatus Methylomirabilis oxyfera]
gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Candidatus Methylomirabilis oxyfera]
Length = 372
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 198/384 (51%), Gaps = 32/384 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKP-AEVQAVEAG 102
+D ++R A +A+K G TSP+P G ++ G++ GEGY +AQ KP AEV A+E
Sbjct: 5 DDERFMRHALVLAEKGRGRTSPNPMVGAVV-VQHGRIVGEGY-HAQAGKPHAEVVALEYA 62
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G R A Y+ +EP +G ++QAGI RVVV +P + G+ V++LR G
Sbjct: 63 GGAARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDAG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V DL + A + L N I R PF V K A++LD
Sbjct: 123 VIV-----DLG---LRSADATAL--NEAFIKFMKHRTPFVVLKAAVSLD----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMR 280
GKIA +G + W+S + SR+ + LR + DAV+VG TVRRDNPRLT R GG P+R
Sbjct: 162 -GKIATRTGDSRWVSGERSREHIHTLRDQIDAVIVGIGTVRRDNPRLTTRLPEGGRDPIR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAP-TIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
+V+ P++A + A T V A K + L RG+ V+E R +E
Sbjct: 221 VVVDGLGPFPDDAQILQAEAASRTWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLE 280
Query: 340 Y----FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ +R S++ E G + SAI G++ K FVAP ++GGK AP+ G+
Sbjct: 281 HLLKRLGEREVTSVMIEGGEGIFTSAIEEGIVDKFLLFVAPILLGGKTAPSLFGGTGIDN 340
Query: 396 MSQALDLIDICYEQVGPDMLISGF 419
+ QAL L + EQ+G D+LI G+
Sbjct: 341 IGQALRLARLRIEQLGEDVLIEGY 364
>gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
Length = 394
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 205/409 (50%), Gaps = 53/409 (12%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
K ++ D Y+RRA ++A + G+TSP+P G +I G++ GEG+ G AE A
Sbjct: 3 KGTQMTDEQYMRRAIELAKRGMGYTSPNPMVGAVIVKD-GRIIGEGWHERYGELHAERNA 61
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
++ +GA Y+ +EP HG V A+++AGI RV VG +P + G ++ L
Sbjct: 62 LKHCKESPQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKIL 121
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G++V + + + C +N + +R P+ KYAMT+D
Sbjct: 122 KEHGIEV----------VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMD------- 164
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA SG + WI+ + +R+ V +LR R A++ G TV D+P LT R GG
Sbjct: 165 -----GKIATYSGLSKWITGEKAREHVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGVN 219
Query: 278 PMRIVLTQTLNLPEEANLWDVS-DAPTIVV----------------TQRGARRKFQKYLA 320
P+RI+ L LP E+ + + + + PTIV T++ + + Y
Sbjct: 220 PIRIICDTHLKLPLESQIVNTAKEVPTIVAVSERYHETAQSEALPDTEKDSIEENNNYQK 279
Query: 321 SRGVEVVE---FDIL---------NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIH 368
+R + +E +IL + D+M+ +R SIL E GG L SA+ SG+++
Sbjct: 280 NRKITRLEENGIEILYVAEKNGHIDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVN 339
Query: 369 KVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
KV+A++APK+ GG +A TP+ +G + A+ L + ++G D LI
Sbjct: 340 KVYAYIAPKLFGGADAKTPIEGMGTDSPAHAVMLGNSKVTKLGDDFLIE 388
>gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
Length = 363
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A + G T P+P G +I ++ G G G AE+ A+ G +
Sbjct: 7 YMNIALQNARSTKGQTEPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGEQAK 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP HG ALV+AG+ +VV+ +P + G V L++ G++V
Sbjct: 66 GATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+R+ + N ++ ++ PF K A+TLD GKIA
Sbjct: 124 ----ITGVCEEESRQMNEVFNKYIV----TKKPFVSLKSAITLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+S H+ WI+S+ +R V LR + ++VG NTV +DNP LT R GG +P+RIV+
Sbjct: 164 TASSHSKWITSEEARLDVHQLRHETAGILVGVNTVIKDNPELTTRIEGGRSPIRIVMDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF---DILNSRDVMEYFHD 343
L +P E+ L S APT + T +G ++ ++ L +GVEV D +N D++ +
Sbjct: 224 LRMPLESKLATDSLAPTWIFTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+ S+L E GG + A+ + + LI K+ ++APK+ GGK APT + G+ +M A+D+
Sbjct: 284 KFVSSLLIEGGGEVNAAFLENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVE 343
Query: 404 DICYEQVGPDMLISGF 419
+ +G D G+
Sbjct: 344 RLSVTSIGKDFKFVGY 359
>gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 350
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 186/363 (51%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RG T Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G+ ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+L ++ PF K +TLD GKIA S + WI+S
Sbjct: 122 FNKYIL----------TKRPFVTIKSGVTLD------------GKIATSLSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+RI+L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRIILDSTLRIPMEANIVTDG 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T + +K L + GV+V +N ++++ ++G S+L E GG
Sbjct: 220 EAPTWIFTTSNHAGEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ DI + VG D
Sbjct: 280 VNASFIENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDYRY 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
gi|448238588|ref|YP_007402646.1| riboflavin biosynthesis protein [Geobacillus sp. GHH01]
gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
gi|445207430|gb|AGE22895.1| riboflavin biosynthesis protein [Geobacillus sp. GHH01]
Length = 380
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 195/376 (51%), Gaps = 28/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A G TSP+P G ++ V +L A G AEV A+ G
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKA-GEPHAEVYAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G L+QAG+ RVVV +P + G+ + LR G+
Sbjct: 63 KARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + +EA + +N H ++ PF K+A +LD G
Sbjct: 123 VDV------GVLKDEADE----LNRMFFHYIAAKTPFVTLKFACSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIV 282
KIA ++G + WI+S +R+ V LR + DA++VG NTV DNP+LT R G P+RI+
Sbjct: 161 KIATATGESKWITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRKNPLRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L P +A++ +A T ++T +R + Y GV V ++ RDV+
Sbjct: 221 LDTKLRTPLDAHVVADKEAETWIITGGVSREQAAAY-ERLGVRVFSMPTAQIDVRDVLRL 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++G +S+ E G + S + +G +++V A++APK+IGG+ APTPV LG +++A+
Sbjct: 280 LGEQGVMSLFVEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAV 339
Query: 401 DLIDICYEQVGPDMLI 416
+L E +GPD+ I
Sbjct: 340 ELDIRRIETIGPDIKI 355
>gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 360
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A G T+P+P G +I ++ G G G AE+ A+ RG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAEEQARG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G++V V
Sbjct: 60 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 119
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ +SK + E +L ++ PF K +TLD GKIA
Sbjct: 120 VCEEESKKMNEVFNKYIL----------TKRPFVAIKSGVTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
S + WI+S +R V +R + A++VG NTV+ DNP LT R G P+R++L TL
Sbjct: 158 SLSDSKWITSTEARQEVHQIRNENAAILVGANTVQEDNPSLTTRIPNGRNPIRVILDSTL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDR 344
+P EA + +APT + T + +K L + GV+V +N ++++ ++
Sbjct: 218 RIPMEAKVITDGEAPTWIFTTSNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEK 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E GG + AS I + LI K+ ++APK+IGG+ AP+ V G+ +M A++ D
Sbjct: 278 GVSSLLIEGGGEVNASFIENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKD 337
Query: 405 ICYEQVGPDMLISGF 419
I + QVG D G+
Sbjct: 338 ISFTQVGKDYRFIGY 352
>gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
str. F4969]
gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
str. F4969]
Length = 366
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 194/384 (50%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G+ +R LR G+
Sbjct: 61 SIEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V+V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVNV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + W ++K SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKDFKSKWTTNKKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQSESKTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+ ++ S+L E GG L S + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLACLKEKNIDSVLIEGGGNLNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKNFDEDILIE 361
>gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[butyrate-producing bacterium SS3/4]
Length = 369
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 198/386 (51%), Gaps = 38/386 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A G+TSP+P G +I G++ GEGY G AE A+ +
Sbjct: 3 DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKD-GRIIGEGYHERCGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ I RVV+G R+P + G+ LR+ G+
Sbjct: 62 SAEGATLYVTLEPC-CHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ED R+ C +N H T + P+ V KYAMT D
Sbjct: 121 RVE---EDFM-------REECDALNPVFFHYITKKTPYVVMKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIAA +G + WI+ +++R +V +LR + ++ G TV D+P L R G +P+RI+
Sbjct: 159 GKIAARTGDSKWITGESARKKVQELRHQYMGIMAGIGTVLADDPMLNVRIPGLKSPVRII 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGAR--------RKFQKYLASRGVEVVEF----D 330
L +P ++ + + +V G + ++ L + GVE V
Sbjct: 219 CDSGLRIPMDSQIVKTAKEYRTIVAYAGEHSGEGCKEAEEKEEQLHTAGVETVSVPDADG 278
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ R +MEY +G S+L E GGTL +A+S+G+++++ AF+APKI GG A TPVS
Sbjct: 279 RVDLRKLMEYLGKQGIDSVLLEGGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPVSG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
+G+ ++A+ L E +G D+++
Sbjct: 339 IGVAHPAEAVKLTLRQMETIGDDLML 364
>gi|429764753|ref|ZP_19297062.1| riboflavin biosynthesis protein RibD [Clostridium celatum DSM 1785]
gi|429187521|gb|EKY28433.1| riboflavin biosynthesis protein RibD [Clostridium celatum DSM 1785]
Length = 379
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 196/392 (50%), Gaps = 38/392 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A K G +P+P G +I G + G GY G AEV A
Sbjct: 7 DKFYMNIALQLAKKGKGKVNPNPLVGAIIVRD-GVILGRGYHKEYGKAHAEVNAFLDAKE 65
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G V +++ I+RVV+G+ +P + G+ + L+ G+
Sbjct: 66 DITGATMYVILEPCSHYGKTPPCVERIIENKISRVVIGMIDPNPLVAGKGIEKLKKSGIT 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C +N I T PF V K AM+LD G
Sbjct: 126 VTV-------GVLEE---ECRKLNEVFIKYITKNEPFVVLKTAMSLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S G + WI+ + +R+ V +LR +A++VG +TV DNP LT R G P+RI++
Sbjct: 164 KIATSRGESKWITGEKARNEVHNLRNELEAIMVGVDTVIIDNPELTCRLENGRNPIRIIV 223
Query: 284 TQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEF---------DILN 333
TL +P + + D A TIV T++ A + K L + GV V++ +I N
Sbjct: 224 DSTLKIPLNSKVLKNQDEAKTIVATKKEAIEEKVKKLEALGVTVLKISDDKEYENNNIRN 283
Query: 334 SR-DVMEYFHDRGYLSI---LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ ++ + G L+I L E G TL SA+ G++ K+ ++APKIIGG N+ PV
Sbjct: 284 KKVNLNNLMKELGKLNIDGVLLEGGATLNYSALQEGIVDKIQVYIAPKIIGGLNSKGPVG 343
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G+ + A + D+ + +G D+LI G+++
Sbjct: 344 GTGIDFLKDAFKINDLTSKFIGEDILIEGYIE 375
>gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
Length = 350
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 185/363 (50%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T+P+P G +I ++ G G G AE+ A+ G RG T Y+ +EP
Sbjct: 3 GQTTPNPLVGSVIVNDN-RIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG A+VQAGI +VVV +P + G ++ L+ G++V V + +SK + E
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
++ ++ PF K +TLD GKIA S + WI+S
Sbjct: 122 FNKYIM----------TKRPFVTIKSGVTLD------------GKIATSLSDSKWITSTE 159
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
+R V +R + A++VG NTV++DNP LT R G P+R++L TL +P EAN+
Sbjct: 160 ARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVADR 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGGT 356
+APT + T + +K L + GV+V +N ++++ +G S+L E GG
Sbjct: 220 EAPTWIFTTSNYAAEKRKALENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGE 279
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS I + L+ K+ + APKIIGG+ AP+ V G+ +M A++ DI + QVG D
Sbjct: 280 VNASFIENKLMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRF 339
Query: 417 SGF 419
G+
Sbjct: 340 IGY 342
>gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 363
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 204/384 (53%), Gaps = 28/384 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y+ A ++A K G +P+P G LI ++ G GY G AEV A+
Sbjct: 2 NEKYMELALELAKKGEGKVNPNPLVGALIVKDN-EIIGAGYHEKYGESHAEVNAINNATK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G V +++ I +V++G+ +P + G++++ L+ ++
Sbjct: 61 SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G +EE + C +N I TS +PF + K A++LD G
Sbjct: 121 V-IVG-------VEEEK--CKKINESFIKYITSNLPFVILKSAISLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S G + WI+S+ SR LR + A++VG NT+ D+P LT R G P+R+++
Sbjct: 159 KIATSIGESKWITSEESRRDGHLLRNKLSAIMVGINTIIEDDPELTCRIKNGKNPIRVIV 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFH 342
L +P + + + SD TIV T + A + ++ L ++GV V+E + N + D+ E
Sbjct: 219 DSNLRIPLNSKVLNNSDKLTIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMR 278
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G L SIL E GGTL SA+ ++ KV ++APKI+GG+ + + + G ++S A
Sbjct: 279 CLGTLKIDSILIEGGGTLNFSALEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDA 338
Query: 400 LDLIDICYEQVGPDMLISGFLQPI 423
+ L ++ YE++ D++I G++ +
Sbjct: 339 VKLKELTYEKLSEDIVIEGYINKL 362
>gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Eubacterium rectale M104/1]
Length = 388
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 198/403 (49%), Gaps = 53/403 (13%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA ++A + G+TSP+P G +I G++ GEG+ G AE A++
Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKD-GRIIGEGWHERYGELHAERNALKHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP HG V A+++AGI RV VG +P + G ++ L+ G++
Sbjct: 62 SPQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + + C +N + +R P+ KYAMT+D G
Sbjct: 122 V----------VTQVLKDECDRLNEVFFYFIQTRRPYVAMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+ + +R+ V +LR R A++ G TV D+P LT R GG P+RI+
Sbjct: 160 KIATYSGLSKWITGEKAREHVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGVNPIRIIC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARR-------------------KFQK-----Y 318
L LP E+ + + + + PTIV R +QK
Sbjct: 220 DTHLKLPLESQIVNTAKEVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITR 279
Query: 319 LASRGVEVVEFDILNS----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFV 374
L G+E++ N D+M+ +R SIL E GG L SA+ SG+++KV+A++
Sbjct: 280 LEENGIEILYVAEKNGHIDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYI 339
Query: 375 APKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
APK+ GG +A TP+ +G + A+ L + ++G D LI
Sbjct: 340 APKLFGGADAKTPIEGMGTDSPAHAVMLGNSKVTKLGDDFLIE 382
>gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
Langeland]
gi|384463135|ref|YP_005675730.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
230613]
gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
Langeland]
gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
230613]
Length = 365
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A++ G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG +TV +DNP LT R GG +P I++
Sbjct: 164 TRTGESKWITGEEARYKVQQIRNDLSGIMVGIDTVIKDNPLLTTRIEGGRSPKAIIVDSN 223
Query: 287 LNLPEEANLWDVSD--APTIVVTQRGARRKFQKYLASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + A I T++ + L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETFNKRAIYIAATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLVSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L ++ +E++G D+LI G++
Sbjct: 344 FKLENLKFEKIGQDILIEGYV 364
>gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
MLS10]
gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
MLS10]
Length = 361
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 194/363 (53%), Gaps = 27/363 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +IA+ + G TSP+P GC+I ++ G G G AE QA+
Sbjct: 3 DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHN-QIKGIGAHLKAGEWHAERQALHMAKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S AL++AGI+RVV +P + G+ +R LR G++
Sbjct: 62 EANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V G +++ R + N H T + P+ K+A +LD G
Sbjct: 122 V-VEG-------VQKERADRM--NRWFFHAITKQTPYVTLKFATSLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA ++G + WIS++ SR V +R + D ++VG TV +DNP LT R GG P+RI+
Sbjct: 160 KIATATGESQWISNEKSRADVHRIRHQVDGILVGRETVVQDNPSLTTRLPAGGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS--RDVMEY 340
+ +TL P ++ + + +P +VT GA ++ ++ L + G E++E + +++E
Sbjct: 220 MDRTLRTPPDSIMLNDGQSPVWIVTNAGASQERKEMLIASGAEIIEITDKDRFIEEMLEV 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+G ++L E GGT+ ++ GL H+V + AP IIGGK+A + S G+ +++ A
Sbjct: 280 LGRQGISTLLVEGGGTINDQFLTRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAP 339
Query: 401 DLI 403
L+
Sbjct: 340 RLL 342
>gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426]
gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase )
[Geobacillus kaustophilus HTA426]
Length = 380
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 196/376 (52%), Gaps = 28/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A G TSP+P G ++ V G+L A G AEV A+ G
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGGHLKA-GEPHAEVYAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G L+QAG+ RVVV +P + G+ + LR G+
Sbjct: 63 KARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + +EA + +N H ++ PF K+A +LD G
Sbjct: 123 VDV------GVLKDEADE----LNRMFFHYIAAKTPFVTLKFACSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIV 282
KIA ++G + WI+S +R+ V LR + DA++VG NTV DNP+LT R G P+RI+
Sbjct: 161 KIATATGESKWITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRKNPLRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L P +A++ +A T ++T +R + Y GV V ++ RDV+
Sbjct: 221 LDTKLRTPLDAHVVADKEAETWIITGGVSREQAAAY-ERLGVRVFSMPTAQIDVRDVLRL 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++G +S+ E G + S + +G +++V A++APK+IGG+ APTPV LG +++A+
Sbjct: 280 LGEQGVMSLFVEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAV 339
Query: 401 DLIDICYEQVGPDMLI 416
+L E +GPD+ I
Sbjct: 340 ELDIRRIETIGPDIKI 355
>gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter daltonii FRC-32]
gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter daltonii FRC-32]
Length = 368
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 196/382 (51%), Gaps = 31/382 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RA +A K G T+P+P GC+I G + GEG+ GT AE+ A+ G+
Sbjct: 8 MMKRAVSLARKGVGKTAPNPAVGCVI-VKDGAIVGEGWHRKAGTPHAEIHALRQAGALAE 66
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA ++ +EP G AL+ A + RV VG+ +P + G+ + LR+ G+QV
Sbjct: 67 GADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAAGIQV-- 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ ++EE C +N P I T+ +PF + K AMT+D GKIA
Sbjct: 125 -----EAPLLEE---KCRALNEPFIKHVTTGLPFVILKTAMTMD------------GKIA 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + W++S+ SR V LR D ++VG T+ +D+P LT+R GG P+R+V+
Sbjct: 165 TAGMDSKWVTSEKSRRYVHKLRSELDVIMVGVGTIIKDDPLLTSRIPGGRNPLRVVVDSK 224
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEYF 341
L +P +A++ S A T+V T + + LA G EV+ + D ++ +M
Sbjct: 225 LRIPPDAHVLHCDSTAKTVVATISSDEAQVSR-LAGLGAEVLSCGEDGDRVDLCCLMAKL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
RG S+L E G LA A+ G+I K F APK++ G + P + G +M+ AL
Sbjct: 284 GKRGVQSVLLEGGAELAGEALRKGIIDKCMFFYAPKLVAG-DGLGPFAGNGAGKMADALK 342
Query: 402 LIDICYEQVGPDMLISGFLQPI 423
L + ++G D+L+ G+ + I
Sbjct: 343 LQWVTVTKIGVDILVQGYPEKI 364
>gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Carnobacterium sp. 17-4]
gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Carnobacterium sp. 17-4]
Length = 355
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 195/375 (52%), Gaps = 29/375 (7%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A D+A K G+T+P+P G +I G+V G+GY G AEV A+ + GAT
Sbjct: 2 ALDLARKGKGWTTPNPLVGAVIVKG-GRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATL 60
Query: 112 YLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP G S L+ I RVVVG +P + G+ + LRS G++V
Sbjct: 61 YVTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEV------ 114
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
+ + EE++K +N I ++ PF V K AM+LD GKIA +G
Sbjct: 115 VTGVLEEESQK----LNEIFIKYIVTKEPFVVMKNAMSLD------------GKIATVTG 158
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLP 290
+ WIS ++SR +V LR ++VG T+ +D+P+LT+R P+RIV+ L +P
Sbjct: 159 ESQWISGESSRKQVHSLRHELAGIMVGIETIIKDDPQLTSRTLNSRNPIRIVVDSQLRIP 218
Query: 291 EEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEYFHDRG 345
+ + D A TIV T + A + + L G+EV+ ++ ++ +++M+ +G
Sbjct: 219 IASKVLTQQDKAKTIVATTKRANNEKLETLKQMGIEVIVTKEKYGRVDLQELMKVVGAKG 278
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
SIL E G TL SA+ G++ K+ +++APKIIGGK A T V G+ + A + +
Sbjct: 279 IDSILLEGGATLNFSALEEGIVDKIQSYIAPKIIGGKEAKTAVEGAGVHSLKSAFQIDRM 338
Query: 406 CYEQVGPDMLISGFL 420
VG D+ + G++
Sbjct: 339 TPVMVGEDLFVEGYI 353
>gi|429737034|ref|ZP_19270907.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
138 str. F0429]
gi|429153474|gb|EKX96256.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
138 str. F0429]
Length = 372
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 191/381 (50%), Gaps = 30/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y+R A +A + G TSP+P G +I VA G+ A G AE+ A+ G
Sbjct: 10 DESYMREALRMAAYARGRTSPNPLVGAVIVRDDTIVA-SGWHRAAGEPHAEIHALRMAGE 68
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP HG A++ AGI RVVV + +P + G+ LR+ G++
Sbjct: 69 LARGATLYVTLEPCAHHGRTGPCAEAVIAAGIARVVVALSDPNPLVAGRGFSLLRAAGIE 128
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S + E EAR+ N + T++ PF K AMTLD
Sbjct: 129 V-------VSGVCEAEARRQ----NEVFLKWVTTKHPFVTLKTAMTLD------------ 165
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMR 280
GKIA+ +G + WI+ + +R RV + R DA++VG TV D+P LT R G GH P R
Sbjct: 166 GKIASHTGASQWITGEAARARVHECRDVQDAILVGIGTVLADDPSLTTRLEGRTGHNPPR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVM 338
IVL P +A L APT++ A + L + G EVV + ++ ++
Sbjct: 226 IVLDSEARTPIDAKLLTDGAAPTVIAVSERADHRRVNLLHACGAEVVTLGAERVDIGQLL 285
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ S+ E G + S ++ G + KV AF+AP ++GG APTP+ G
Sbjct: 286 DWLGAHEISSLFVEGGAQVNWSFLAGGFVDKVHAFIAPMLMGGTAAPTPIGGTGFDSPQA 345
Query: 399 ALDLIDICYEQVGPDMLISGF 419
AL L D+ EQVG D+L++G+
Sbjct: 346 ALRLTDMTVEQVGADILVTGY 366
>gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
Length = 380
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 194/376 (51%), Gaps = 28/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A G TSP+P G ++ V +L A G AEV A+ G
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKA-GEPHAEVYAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G L+QAG+ RVVV +P + G+ + LR G+
Sbjct: 63 KARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + +EA + +N H ++ PF K+A +LD G
Sbjct: 123 VDV------GVLKDEADE----LNRMFFHYIAAKTPFVTLKFACSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIV 282
KIA ++G + WI+S +R+ V LR + DA++VG NTV DNP+LT R G P+RI+
Sbjct: 161 KIATATGESKWITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRKNPLRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS--RDVMEY 340
L L P +A++ +A T ++T +R + Y GV V + RDV+
Sbjct: 221 LDTKLRTPLDAHVVADKEAETWIITGGVSREQAAAY-ERLGVRVFSMPTAQTDVRDVLRL 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++G +S+ E G + S + +G +++V A++APK+IGG+ APTPV LG +++A+
Sbjct: 280 LGEQGVMSLFVEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAV 339
Query: 401 DLIDICYEQVGPDMLI 416
+L E +GPD+ I
Sbjct: 340 ELDIRRIETIGPDIKI 355
>gi|346308910|ref|ZP_08851014.1| riboflavin biosynthesis protein RibD [Dorea formicigenerans
4_6_53AFAA]
gi|345901459|gb|EGX71258.1| riboflavin biosynthesis protein RibD [Dorea formicigenerans
4_6_53AFAA]
Length = 375
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 195/383 (50%), Gaps = 36/383 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA ++A K G+T+P+P G +I G++ GEGY G AE A+ +
Sbjct: 3 DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKD-GRIIGEGYHARCGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ I +VV+G R+P + G+ + LR G+
Sbjct: 62 SAEGATLYVTLEPC-CHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED R C +N H T++ P+ V KYAMTLD
Sbjct: 121 AVV---EDFM-------RDKCDELNPIFFHYITTKTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ + +R V +R R ++VG TV D+P L R G +P+RI+
Sbjct: 159 GKIATKTGASKWITQEAARREVQYMRHRYMGIMVGIGTVLADDPMLNVRVEGLKSPVRII 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKYLASRGVEVVEF-DI---LNSRD 336
L +P ++ + + +V K ++ L + GVE V D+ +N +
Sbjct: 219 CDSKLRIPLDSQIVKSAREYRTIVAYADLENVEKKKEILQTMGVETVFCPDMKKHVNLKH 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+MEY SIL E GGTL SA+ +G++ +V AF+APKI GG + TPV +G+
Sbjct: 279 LMEYLGKENIDSILLEGGGTLNDSALRAGVVQEVQAFIAPKIFGGTGSRTPVDGIGIELP 338
Query: 397 SQA--LDLIDICYEQVGPDMLIS 417
SQA L DIC Q+G D+ I+
Sbjct: 339 SQAAVLKFKDIC--QIGEDLKIT 359
>gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
Loch Maree]
gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
Loch Maree]
Length = 365
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 197/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A++ G +P+P G ++ + K+ GEGY G AEV A+ +
Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREASEKAK 65
Query: 108 GATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + +V+ GI++ ++ +++P + G+ + L+ G++V
Sbjct: 66 GATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 124 -----VTEIMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG +TV +D+P LT R GG +P I++
Sbjct: 164 TRTGESKWITGEEARHKVQQIRNDLSGIMVGIDTVIKDDPLLTTRIEGGRSPKAIIVDSN 223
Query: 287 LNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV-----ME 339
L +P E+ + + A I T++ + L + G +V+EF+ V M+
Sbjct: 224 LRIPLESKILETLSKRAIYIATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ K+ F+APKI+GG+++ T + G+ +
Sbjct: 284 YLGSEGVDSILLEGGSTLNFSALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Eubacterium rectale DSM 17629]
Length = 386
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 198/403 (49%), Gaps = 53/403 (13%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA ++A + G+TSP+P G +I G++ GEG+ G AE A++
Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKD-GRIIGEGWHERYGELHAERNALKHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP HG V A+++AGI RV VG +P + G ++ L+ G++
Sbjct: 62 SPQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + + C +N + +R P+ KYAMT+D G
Sbjct: 122 V----------VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+ + +R+ V +LR R A++ G TV D+P LT R GG P+RI+
Sbjct: 160 KIATYSGLSKWITGEKAREHVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGVNPIRIIC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARR-------------------KFQK-----Y 318
L LP E+ + + + + PTIV R +QK
Sbjct: 220 DTHLKLPLESQIVNTAKEVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITR 279
Query: 319 LASRGVEVVEFDILNS----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFV 374
L G+E++ N D+M+ +R SIL E GG L SA+ SG+++KV+A++
Sbjct: 280 LEENGIEILYVAEKNGHIDLNDLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYI 339
Query: 375 APKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
APK+ GG +A TP+ +G + A+ L + ++G D LI
Sbjct: 340 APKLFGGADAKTPIEGMGTDSPAHAVMLGNSKVTKLGDDFLIE 382
>gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
2916]
gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
2916]
Length = 365
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A + G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKALKLAKRGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG T+ +DNP LT R G +P I++ +
Sbjct: 164 TKTGESKWITGEEARYKVHQIRNDLSGIMVGIGTIIKDNPLLTTRIERGRSPKAIIVDSS 223
Query: 287 LNLPEEANLWDVSDAPTIVV--TQRGARRKFQKYLASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + TI + T++ + L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETLNERTIYIAATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLGSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
Length = 370
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 200/386 (51%), Gaps = 34/386 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A K G +P+P G +I + G + G+GY G AEV A++ G
Sbjct: 9 DEYYMKMALNLALKGQGNVNPNPLVGAVI-VNNGNIVGQGYHKFYGGPHAEVYALKEAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+G Y+++EP +G A+++AGI +VV+ +++P + G ++ L G++
Sbjct: 68 SAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNGVE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA+K VN I T + PF + K AMTLD G
Sbjct: 128 VIV------GVLEEEAKK----VNEIFIKYITEKTPFVILKTAMTLD------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA +G + WI+ + SR V +R R ++ G T+++DNP LT R G +P I+
Sbjct: 166 KIATKTGESQWITGEESRKYVHTIRNRVMGIMAGIGTIKKDNPLLTTRFIEDGKSPTAII 225
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
+ L++P E+ ++ + I++ + A++K + L +G++++ N+R ++
Sbjct: 226 VDSKLSIPVESKIFTTLNERKIIIACTEEFDAKKKEE--LEQKGIKIIITPKDNNRVDLK 283
Query: 340 YFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
Y G SIL E GG L SA+ S ++ K+ F+APKI+GG +A TPV G+
Sbjct: 284 YLMKELGKEGIDSILLEGGGELNFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEI 343
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+ A+ + + + VG D+LI G+
Sbjct: 344 LKNAVLINKMNCKNVGEDLLIEGYFN 369
>gi|374673043|dbj|BAL50934.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus lactis subsp. lactis IO-1]
Length = 362
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 196/383 (51%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A +A K G +P+P G LI G++ G+GY G AE+ A +
Sbjct: 3 KDEYYMDLAIVLAKKGGGNVNPNPQVGALIVKE-GRIIGQGYHEKYGEAHAEINAFKDCN 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP G A+++ I RVV+G +P + G+ ++A+R G+
Sbjct: 62 ESPEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMREAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + K++E K C +N + + +P+ + KYAMTLD
Sbjct: 122 EVSI-------KVLE---KECEELNKIFFYYVSQGLPYVMMKYAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S+G + WI+ + +R++V R R A+++G T+ D+P+L+ R G P+RI+
Sbjct: 160 GKIATSAGQSKWITGEIAREKVHQDRSRFMAIMIGVETLILDDPQLSVRLENGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL----NSRDV 337
L P + + ++ PTI+ T K +L G E++ L N +++
Sbjct: 220 CDTHLRSPLTSKIVSTATEIPTIIATAESDPEKQAPFLKV-GCEIILVSCLEGRLNLKEL 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++G SI+ E GGTL ASA+ +G++ KV ++APKI GGK AP+PV G+ + +
Sbjct: 279 TKKLGEKGIDSIILEGGGTLNASALKAGIVQKVQTYIAPKIFGGKEAPSPVEGHGIEQPN 338
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
QA L +G D+L+ L
Sbjct: 339 QAYLLKSPQITHLGEDILLESEL 361
>gi|424736467|ref|ZP_18164926.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZB2]
gi|422949463|gb|EKU43837.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZB2]
Length = 371
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A + G T+P+P G +I + G + G G G AEV A G
Sbjct: 6 DEKYMQLALDLAASAKGNTNPNPLVGAVIVKN-GVIVGTGLHRKAGEPHAEVHAFRMAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G + LV ++G++RVVV +++P + G+ ++ L+ G+
Sbjct: 65 HAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDAGIV 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + ++AR+ +N IH + PF + K+AMTLD G
Sbjct: 125 VEV------GVLEQQARR----LNERFIHNMLTHRPFVISKFAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA +GH+ W++ + +R+ V ++R D ++VG TV DNP LT R G G P RI
Sbjct: 163 KIATHTGHSKWVTGEAAREDVHNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRI 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDV 337
++ +L P+ AN+ + DAPTI+V ++ +GV V+ L ++
Sbjct: 223 IMDSSLRTPDNANVLNTEDAPTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEM 282
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+E + G IL E G + AS + G I K ++APK++GGK + TP + M
Sbjct: 283 LEKLYMHGITDILLEGGSKINASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMD 342
Query: 398 QALDLIDICYEQVGPDMLISGF 419
+A ++ ++++G D+ I +
Sbjct: 343 EAWNVEFASFDKIGEDLRIIAY 364
>gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
gi|352683758|ref|YP_004895742.1| riboflavin biosynthesis protein ribD [Acidaminococcus intestini
RyC-MR95]
gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
gi|350278412|gb|AEQ21602.1| riboflavin biosynthesis protein ribD [Acidaminococcus intestini
RyC-MR95]
Length = 366
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 28/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A+K+ G TSP+P GC+I + G V G+GY + G AE+ A++ G
Sbjct: 3 DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP +G AL++AGI +VV +P + G+ R L G++
Sbjct: 63 KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + ++A + N +H + PF KYAMTLD G
Sbjct: 123 V------VSGVLADKAYRQ----NEIFMHYMKTGRPFVALKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+ +R LR DA++VG TV +D+P LT R G P+RI+L
Sbjct: 161 KIATVSGDSKWITGVKARTYAHRLRSWYDAILVGRETVAQDDPSLTVRLVEGKNPLRIIL 220
Query: 284 TQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVV---EFD-ILNSRDVM 338
+LP E ++ A T +VVT + + K + + GV V+ E D ++ D++
Sbjct: 221 DSKASLPLERKVFTDGAADTLLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLL 280
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G + + +GL+ +V+AF+AP +IGG + + G M Q
Sbjct: 281 QQLAKKDVTSVLVEGGSDIHGAFFDAGLVERVYAFIAPSLIGGNKSRPAIGGQGASTMEQ 340
Query: 399 ALDLIDICYEQVGPDMLISGF 419
+ L ++ + PD+L++G
Sbjct: 341 KVTLQEVTTLPLEPDLLVTGL 361
>gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZC1]
gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZC1]
Length = 370
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A + G T+P+P G +I + G + G G G AEV A G
Sbjct: 5 DEKYMQLALDLAASAKGNTNPNPLVGAVIVKN-GVIVGTGLHRKAGEPHAEVHAFRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G + LV ++G++RVVV +++P + G+ ++ L+ G+
Sbjct: 64 HAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDAGIV 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + ++AR+ +N IH + PF + K+AMTLD G
Sbjct: 124 VEV------GVLEQQARR----LNERFIHNMLTHRPFVISKFAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA +GH+ W++ + +R+ V ++R D ++VG TV DNP LT R G G P RI
Sbjct: 162 KIATHTGHSKWVTGEAAREDVHNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDV 337
++ +L P+ AN+ + DAPTI+V ++ +GV V+ L ++
Sbjct: 222 IMDSSLRTPDNANVLNTEDAPTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEM 281
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+E + G IL E G + AS + G I K ++APK++GGK + TP + M
Sbjct: 282 LEKLYMHGITDILLEGGSKINASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMD 341
Query: 398 QALDLIDICYEQVGPDMLISGF 419
+A ++ ++++G D+ I +
Sbjct: 342 EAWNVEFASFDKIGEDLRIIAY 363
>gi|401564568|ref|ZP_10805451.1| riboflavin biosynthesis protein RibD [Selenomonas sp. FOBRC6]
gi|400188721|gb|EJO22867.1| riboflavin biosynthesis protein RibD [Selenomonas sp. FOBRC6]
Length = 367
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 188/381 (49%), Gaps = 30/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +Y+R A +A + G TSP+P G +I G + G+ A G AE+ A+ G
Sbjct: 5 DESYMREALRMAAYARGRTSPNPLVGAVIVRD-GTIIASGWHRAAGEPHAEIHALRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP HG A++ AGI RVVV + +P + G+ + LR+ G++
Sbjct: 64 LARGATLYVTLEPCTHHGRTGPCAEAVIAAGIARVVVALSDPNPLVAGRGLAMLRAAGIE 123
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
++ + E EAR+ N + T++ PF K AMTLD
Sbjct: 124 T-------ETGVCEHEARRQ----NEVFLKWVTTKRPFVTLKTAMTLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA+ +G + WI+ + +R RV R DA++VG TV D+P LT R GH P+R
Sbjct: 161 GKIASHTGASQWITGEAARARVHIYRDVHDAILVGIGTVLADDPSLTTRLPDRTGHNPLR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR--DVM 338
IVL P +A L A T++ A + L S G EVV ++
Sbjct: 221 IVLDSEARTPIDAKLLTDGAASTVIAVSERADHRRVNLLHSCGAEVVTLGAERPEIGQLL 280
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ R SI E G + S ++ G + KV AF+AP ++GG APTP+ G
Sbjct: 281 DWLGAREISSIFVEGGAQVNWSFLAGGFVDKVHAFIAPLLMGGAAAPTPIGGTGFDSPQT 340
Query: 399 ALDLIDICYEQVGPDMLISGF 419
AL L D+ EQVG D+LI+G+
Sbjct: 341 ALHLSDVTVEQVGADILITGY 361
>gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
SM101]
gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
SM101]
Length = 365
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 193/384 (50%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ GEGY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGEGYHEFFGGDHAEINAINSSVK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ VVVG +P + G ++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI++K SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKDFKSKWITNKKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + S++ T++ T + + L +G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLKIPLDSEILKNQSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L S + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGI 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 RNVLDAFEFPEVNLKTFHNDILIE 361
>gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Megamonas hypermegale ART12/1]
Length = 360
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/376 (35%), Positives = 192/376 (51%), Gaps = 29/376 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A +A + G TSP+P G +I +V G G+ GT AEV A+ G +G
Sbjct: 1 MRLAMQLAGNAIGRTSPNPLVGAVIVKDN-RVVGCGWHREAGTPHAEVHALNQAGELAQG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
A Y+ +EP +G S ALV+A + V G+ + + G+ + L G +HV
Sbjct: 60 ADVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAG--IHVE 117
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
LQ +E RK N + PF V K AMTLD GKIA
Sbjct: 118 YGFLQ----DELRKQ----NEVFFKWIEHKKPFIVLKAAMTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
++G + WI+++TSR + LR D ++VG NTV DNP LTAR GG P+RIV+ +L
Sbjct: 158 ATGQSKWITNETSRAYGYKLRDIYDGIMVGINTVIEDNPMLTARVDGGKNPIRIVVDSSL 217
Query: 288 NLPEEANLWDVSDAPTIV-VTQRGARRKFQKYLAS----RGVEVVEFDILNSRDVMEYFH 342
+ AN+ A TIV T + + K K A V+ E D ++ +++
Sbjct: 218 KIDINANVAQDKSAKTIVATTDKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILG 277
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+ SIL E G TL+ S ++ L+ KV+ F+APKI+GGK A TPV+ G++ + +AL L
Sbjct: 278 QQNICSILVEGGATLSGSFVAKKLVDKVYFFIAPKIVGGKEAKTPVAGTGILNLQEALSL 337
Query: 403 IDICYEQVGPDMLISG 418
DI E++ D+LI G
Sbjct: 338 KDIQIEKLEEDILIIG 353
>gi|39996788|ref|NP_952739.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter sulfurreducens PCA]
gi|409912207|ref|YP_006890672.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter sulfurreducens KN400]
gi|39983676|gb|AAR35066.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter sulfurreducens PCA]
gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter sulfurreducens KN400]
Length = 369
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 186/379 (49%), Gaps = 34/379 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A K G TSP+P GC+I G V GEG+ GT AEV A+ G RG
Sbjct: 9 MRRALSLARKGIGKTSPNPVVGCVIVRE-GVVVGEGWHRKAGTPHAEVHALREAGPLARG 67
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV--H 165
A Y+ +EP G ALV AG+ RV VG+ +P + G+ + L + G+QV
Sbjct: 68 ADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQVITG 127
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
VLG K C L+N P + ++ +PF K A+TLD GK
Sbjct: 128 VLG------------KECRLINEPFVKHVSTGLPFLTLKSALTLD------------GKT 163
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A + G + WI++ SR V LR DAV+VG T+ DNP LT RH G P+RI++
Sbjct: 164 ATALGDSRWITNDKSRRYVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDS 223
Query: 286 TLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEY 340
+L +P E+ L D TI+ T + + +L +RG +V+ + ++ RD+M+
Sbjct: 224 SLKIPNESRVLGDDLARGTIIATTSDDQERI-GFLETRGAQVIRCASDKGRVDLRDLMQR 282
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+G SIL E G LA +A+ GLI K F AP ++GG + M +A
Sbjct: 283 LGAKGIQSILLEGGSELAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAF 342
Query: 401 DLIDICYEQVGPDMLISGF 419
L + G D++I +
Sbjct: 343 RLETARVRRFGGDVMIEAY 361
>gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
BS1]
gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
BS1]
Length = 371
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 172/341 (50%), Gaps = 30/341 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA--GGSF 105
Y+ R ++A K AG+ SP+P G L+ G++ GEGY G AEV A+ +
Sbjct: 15 YMSRCLELAGKGAGYVSPNPMVGSLLVLD-GQIIGEGYHERYGGPHAEVNAIASVKDSEQ 73
Query: 106 CRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
R +T Y+N+EP HG S L+ Q I RVVV R+P + + G+ ++ L G++V
Sbjct: 74 LRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAGVEV 133
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
++EE L +N + +PF K TLD GK
Sbjct: 134 -------IEGVLEE---RSLKLNEAFMKSHVKNIPFVSLKLGQTLD------------GK 171
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IA +G + WI+ + +RD V LR R DAV+ G T+ D+P LT RH G P+R+VL
Sbjct: 172 IATVNGLSKWITGQPARDHVHFLRSRYDAVMTGSGTIVADDPLLTVRHLPGRNPLRVVLD 231
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEY 340
+ L LPE N+++ A + + G ++ L +GVEVV N R +V+
Sbjct: 232 RRLQLPETMNVYNGEAATIVFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHV 291
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
H G LS+ E G L+ S + SGL+ K++ +VAPKI GG
Sbjct: 292 LHANGVLSVFVEAGSRLSGSLLQSGLVDKIYLYVAPKIFGG 332
>gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium
sp.]
Length = 380
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 40/391 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A D+A+K GFTSP+P G ++ GKVAG+GY A G AEV A++
Sbjct: 16 DDLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKD-GKVAGKGYHEAYGKAHAEVNAIDDAK 74
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP + G ++++GI RVV IR+P ++G L++ G+
Sbjct: 75 KDSFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGI 134
Query: 163 QV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
V V G+ EA K N I ++ PF + K A TLD
Sbjct: 135 DVIFGVCGK--------EAEKQ----NEIFIKYTKTKRPFVMVKCASTLD---------- 172
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTP 278
G IA +G + W++ + SR V LR SDA++VG +TV+RDNP LT R G G +P
Sbjct: 173 --GNIATKTGDSKWVTGEESRQFVHRLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSP 230
Query: 279 MRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRK--FQKY--LASRGVEVVEF---- 329
+R++L L++ E+A + + SD+ TI+V A K QK L +G++++E
Sbjct: 231 VRVILDSRLSISEDALVLNKNSDSDTIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAEN 290
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+++N +M+ G S+L E G + ASA S ++ K+F F APKI+GG + +
Sbjct: 291 NLINLDILMDTLGLMGITSLLIEGGSRVIASAFSQKIVDKIFFFYAPKILGG-DGVSICR 349
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G M L + ++ ++ G D+LI G++
Sbjct: 350 GPGPALMRDCLPVKEVGIQKFGDDILIEGYI 380
>gi|375009354|ref|YP_004982987.1| riboflavin biosynthesis protein RibD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288203|gb|AEV19887.1| Riboflavin biosynthesis protein RibD [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 380
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 194/376 (51%), Gaps = 28/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A G TSP+P G ++ V +L A G AEV A+ G
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKA-GEPHAEVYAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G L+QAG+ RVVV +P + G+ + LR G+
Sbjct: 63 KARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + +EA + +N H ++ PF K+A +LD G
Sbjct: 123 VDV------GVLKDEADE----LNRMFFHYIAAKTPFVTLKFACSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIV 282
KIA ++G + WI+S +R+ LR + DA++VG NTV DNP+LT R G P+RI+
Sbjct: 161 KIATATGESKWITSSAAREDAHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRKNPLRII 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L P +A++ +A T ++T +R + Y GV V ++ RDV+
Sbjct: 221 LDTKLRTPLDAHVVADKEAETWIITGGVSREQAAAY-ERLGVRVFSMPTAQIDVRDVLRL 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++G +S+ E G + S + +G +++V A++APK+IGG+ APTPV LG +++A+
Sbjct: 280 LGEQGVMSLFVEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAV 339
Query: 401 DLIDICYEQVGPDMLI 416
+L E +GPD+ I
Sbjct: 340 ELDIRRIETIGPDIKI 355
>gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
YUAN-3]
gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
YUAN-3]
Length = 367
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 200/382 (52%), Gaps = 38/382 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A + A+K G+ +P+P G ++ G+V G G+ G AE A+ +
Sbjct: 3 DETYMKLALEYAEKGCGWVNPNPMVGAVVVKD-GRVIGTGWHRRYGELHAERNALASCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP CH T A++++GI RVVVG +P + G+ +R LR +G+
Sbjct: 62 PPQGATLYVTLEPC-CHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGI 120
Query: 163 QVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+V VLG+ +C +N H +R+P+ V KYAMT+D
Sbjct: 121 EVAEGVLGD------------ACTGINEVFFHFIRTRMPYVVMKYAMTMD---------- 158
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA SG + WI+ +T+R R + R R ++VG TV D+P LT R G P+R
Sbjct: 159 --GKIATCSGQSKWITGETARRRTQEDRHRYSGIMVGIGTVLTDDPLLTCRLPDGRNPVR 216
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKY-LASRGVEVVEFDI----LNS 334
IV L P A + ++ +APTI+VT +R + Y G EV+ ++
Sbjct: 217 IVCDSRLRTPLNAQIVRITGEAPTILVTC--SRDEALAYPYRDAGCEVLTLPAKDGHVDL 274
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
R +M +G S+L E GG L SA+ SG+++KV A+VAPK+ GG NA +PV+ +G+
Sbjct: 275 RALMTALGKKGIDSVLLEGGGALNWSALQSGIVNKVQAYVAPKLFGGINAKSPVAGMGVE 334
Query: 395 EMSQALDLIDICYEQVGPDMLI 416
QA L ++G D+L+
Sbjct: 335 SPEQAFRLASPQVTRLGEDILL 356
>gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
Length = 373
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 203/388 (52%), Gaps = 30/388 (7%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S A D A++R A ++A++ G P+P GC+I + G+V G G+ G AEV+A++
Sbjct: 8 SAASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQ 67
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G RG+T Y+ +EP G + A++ AG+ RVV + +P ++G LRS
Sbjct: 68 QAGEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRS 127
Query: 160 QGLQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G+ V +S + E EAR C AP + T +P+ + K+AMTLD
Sbjct: 128 AGIAV-------ESGVCEAEARALC----APYLKLVTRGMPWVIAKWAMTLD-------- 168
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA SG++ WIS SR+ V +RGR D ++VG TV D+P LTAR G TP
Sbjct: 169 ----GKIATRSGYSQWISCSQSRELVHGIRGRVDGIMVGRRTVELDDPLLTARPPGKRTP 224
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
RIVL L L + +P +VVT A K + L+ G EV+ F
Sbjct: 225 ARIVLDSQARLQNSTQLVRTARQSPVLVVTGPEADDKEIRRLSMAGCEVLPFLAATHFER 284
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+++ R +IL E G L S + + L+ +V F+APK+ GG+ AP PV+ G+
Sbjct: 285 LLELLSELGRRQMTNILVEGGAKLLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGV 344
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
+++ AL+L ++ +Q+G D+ +SG L
Sbjct: 345 EQVASALELRNLKIDQIGTDLYVSGRLH 372
>gi|387819142|ref|YP_005679489.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium
botulinum H04402 065]
gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium
botulinum H04402 065]
Length = 365
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A++ G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREAGERAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG T+ +DNP L R G +P I++ +
Sbjct: 164 TKTGESKWITGEEARYKVHQIRNDLSGIMVGIGTIIKDNPLLNTRIERGRSPKAIIVDSS 223
Query: 287 LNLPEEANLWDVSDAPTIVV--TQRGARRKFQKYLASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + TI + T++ + L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETLNERTIYIATTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLGSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+L ++ +E++G D+LI G++
Sbjct: 344 FNLQNLKFEKIGQDILIEGYV 364
>gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
str. JGS1721]
gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
str. JGS1721]
Length = 366
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKD-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T V A+++ RVVVG +P + G++++ LR G+
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGI 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E K C+ +N PF K+AMTLD
Sbjct: 120 EVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTP 278
GKIA + WI++K SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 GKIATKDFKSKWITNKKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKH 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LN 333
RIVL L +P ++ L + +++ T++ T + + L G+EV+E ++ +N
Sbjct: 218 FRIVLDSKLRIPLDSEILKNQNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKIN 277
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV G+
Sbjct: 278 INQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGV 337
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ A + ++ + D+LI
Sbjct: 338 SNVLDAFEFPEVNLKNFDKDILIE 361
>gi|386812801|ref|ZP_10100026.1| riboflavin biosynthesis protein [planctomycete KSU-1]
gi|386405071|dbj|GAB62907.1| riboflavin biosynthesis protein [planctomycete KSU-1]
Length = 377
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 197/376 (52%), Gaps = 29/376 (7%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A ++A+K G P+P G ++ + ++ G GY G AEV A+ GG+ C+GAT
Sbjct: 4 ALELAEKGRGKVEPNPMVGAVLVKND-EIIGTGYHQIFGGAHAEVHAIHEGGANCKGATL 62
Query: 112 YLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y++MEP +G V A+V+AGI +V+ I +P G+ +R L+ G+++ + +
Sbjct: 63 YVSMEPCAHYGKTAPCVDAIVKAGIGKVIAAIIDPNPITSGKGIRKLKEAGIEIKLGVME 122
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
Q+ + +NA +P+ + K+AM+LD GKIA +G
Sbjct: 123 FQA----------MKLNASFFKLMQQGLPYVIVKWAMSLD------------GKIATHTG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLP 290
+ WI+ + SR +RG+ D ++VG NTV RD+P LT R GG P RI++ +LP
Sbjct: 161 DSKWITCEESRVYAHKVRGQVDGILVGINTVLRDDPLLTCRLEGGRNPKRIIIDSNASLP 220
Query: 291 EEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFHDRGYL- 347
+ L + ++ +V R A + K L G EV++ + ++ R D+ E F G +
Sbjct: 221 LHSRLLKTIHESEIVVAVSRNALPERIKKLRQLGCEVIQTNTMSGRVDLQELFRQLGEMK 280
Query: 348 --SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+IL E G + + + L KV F+AP IIGG+ A +PV G+ +++++ + +I
Sbjct: 281 MTNILVEGGSRVITAVLEDCLADKVIVFIAPIIIGGQGANSPVLGKGIDAIAESVKVNEI 340
Query: 406 CYEQVGPDMLISGFLQ 421
++ D++I GFL+
Sbjct: 341 TIKRFSDDVVIEGFLK 356
>gi|440779954|ref|ZP_20958542.1| riboflavin biosynthesis protein RibD [Clostridium pasteurianum DSM
525]
gi|440221630|gb|ELP60834.1| riboflavin biosynthesis protein RibD [Clostridium pasteurianum DSM
525]
Length = 359
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 194/379 (51%), Gaps = 29/379 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +++ K G+ +P+P G +I + K+ GEGY + G AE+ A + G
Sbjct: 1 MKRALELSKKGKGYVNPNPLVGAVIVKNN-KIIGEGYHHIYGGDHAEIDAFKNSIEDVNG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G +V+ GI +VV+ +++P + G+ ++ L+ +++
Sbjct: 60 ATMYVTLEPCSHYGKTPPCAKTIVEKGIKKVVIALKDPNPLVSGRGIKILQDNSIEI--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ I+E+ C +N + TS++PF + K AMTLD GKIA+
Sbjct: 117 ----VTGILED---ECKKLNEIFLKYITSKLPFCIMKTAMTLD------------GKIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G + WI+++ SR+ V +LR ++VG T+ DNP LT R G RI++ TL
Sbjct: 158 CTGDSKWITNEASRNYVHNLRNTVSGIMVGIGTILADNPFLTTRLNNGTDAERIIVDSTL 217
Query: 288 NLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY----FH 342
+P ++N+ ++ S A TI+ T A K K L G V+ + + + Y
Sbjct: 218 RIPLDSNVLNLNSKANTIIATTEKANSKKLKTLEDMGACVIITPLKEGKVDLNYLIKTLG 277
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+ SIL E G L +A+ +I KV++F++PK IGG A TP+ G+ M A+ L
Sbjct: 278 EFKIDSILLEGGSYLNYTALKENIIDKVYSFISPKFIGGNEAKTPIGGEGISFMKDAVRL 337
Query: 403 IDICYEQVGPDMLISGFLQ 421
+I D+LI G+++
Sbjct: 338 KNINIHNFAEDILIEGYIE 356
>gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
Okra]
gi|429246391|ref|ZP_19209714.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
CFSAN001628]
gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
Okra]
gi|428756582|gb|EKX79131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
CFSAN001628]
Length = 365
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ +A +A++ G +P+P G ++ + K+ GEGY G AEV A+ G +
Sbjct: 7 HMEKALKLAERGEGKVNPNPKVGAIVVKNN-KIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G ++V+ GI++ ++ +++P + G+ + L+ G++V V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEV-V 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G I+E+ K +N I T + PF V K A TLD GKIA
Sbjct: 125 TG------IMEKESKK---LNEVFIKYITKKKPFVVLKTASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R +V +R ++VG +TV +DNP LT R GG +P I++
Sbjct: 164 TRTGESKWITGEEARYKVQQIRNDLSGIMVGIDTVIKDNPLLTTRIEGGRSPKAIIVDSN 223
Query: 287 LNLPEEANLWDVSD--APTIVVTQRGARRKFQKYLASRGVEVVEFDILNS-----RDVME 339
L +P E+ + + + A I T++ + L + G +V+EF+ ++M+
Sbjct: 224 LRIPLESKILETFNKRAIYIAATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQ 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
Y G SIL E G TL SA+ G++ KV F+APKI+GG+++ + G+ +
Sbjct: 284 YLVSEGVDSILLEGGSTLNFSALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDI 343
Query: 400 LDLIDICYEQVGPDMLISGFL 420
L ++ +E++G D+LI G++
Sbjct: 344 FKLENLKFEKIGQDILIEGYV 364
>gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 367
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 204/390 (52%), Gaps = 32/390 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ +D +++RA ++A ++ G TSP+P G ++ G++ GEGY GT AE+ A+
Sbjct: 1 MTNNDDQRFMQRALELAARARGRTSPNPLVGAVLVKD-GQILGEGYHQRAGTPHAEINAL 59
Query: 100 E-AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
AG +GA+ Y+N+EP +G + ALV+AG+ VV+ +P + G+ V+ L
Sbjct: 60 NTAGRERAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQIL 119
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G++ V + EAR+ +N PF K AMTLD
Sbjct: 120 QEAGIKTRV------GVLTAEARE----LNEFFFKYIQGGRPFVSLKVAMTLD------- 162
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG--GG 275
GKIA+S+G + WI+ SR+ V LR D ++VG TV +D+PRL R G
Sbjct: 163 -----GKIASSNGDSRWITGTASREYVHQLRNIYDGIMVGIGTVLKDDPRLNTRLELEGK 217
Query: 276 HTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----D 330
P+RI++ L++P ++N+ + T+V T A ++ L G+E+++ D
Sbjct: 218 RDPVRIIIDGRLDMPLDSNIARTGHEQRTLVFTAENADQEKANSLRECGLEIIKLGGNPD 277
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
LN + ++ +S+L E G + + I L+ K++ F+APKIIGG+++P+P+
Sbjct: 278 RLNIEEALDILGKMEIMSLLLEGGAEINSYMIEKQLVDKLYWFIAPKIIGGRSSPSPLGG 337
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G+ M+QA+ L + D+LISG++
Sbjct: 338 EGIKIMNQAIKLKSVTTRHFDDDILISGYI 367
>gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
315-B]
gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
315-B]
Length = 372
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 195/385 (50%), Gaps = 36/385 (9%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE---AGG 103
+Y+ A D+A+K GFT +P GC+I ++ G GY G AE A+E G
Sbjct: 9 SYMSLAMDLAEKGKGFTLTNPMVGCVIVNDD-RIIGRGYHKKFGDLHAETMAIEDAQKNG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G+T Y+N+EP CH A+++ I +VV+ +P + + G+ ++ L G
Sbjct: 68 ESLEGSTLYVNLEPC-CHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V ++ + EE K +N H ++ PF K AMTLD
Sbjct: 127 IEV------VEGIMEEEGLK----LNEEFFHFIKTQRPFVTMKSAMTLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GKIA+ +G + WISS+ SRD V LR ++A++VG TV +D+P L R +G P +
Sbjct: 166 -GKIASVTGDSKWISSQISRDYVHKLRAENNAIMVGIGTVLKDDPSLNVRIYGNYKNPTK 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSR-DVM 338
I++ L +P +A L SDAPTI+ G K+ K V ++ + R D++
Sbjct: 225 ILVDSKLRIPLDAKLLSSSDAPTIIACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLL 284
Query: 339 EYF---HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ F D S+L E GG L S + L+ ++ F+ PKIIGG + +PV+ G+
Sbjct: 285 DLFSKLKDFDICSVLLEGGGNLNYSMLRENLVDRLIFFIGPKIIGG-SGLSPVAGEGISL 343
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
M A+ + D E++G D+LI+ ++
Sbjct: 344 MKDAIKIKDFQVEKMGQDILINAYV 368
>gi|407978100|ref|ZP_11158934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus sp. HYC-10]
gi|407415362|gb|EKF36963.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus sp. HYC-10]
Length = 363
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 194/376 (51%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A + A G TSP+P G +I ++ G G G AE+ A+ G +
Sbjct: 7 YMKLALENARAMKGQTSPNPLVGAVIVREN-EIVGVGAHMKAGEPHAEIHALNMAGEKAK 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG ALV+AG+ +VVV +P + G+ + L+ G+QV
Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEALVKAGVEKVVVAALDPNPLVAGRGIAILQDAGIQV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I + +L+N H T + PF K +TLD GKIA
Sbjct: 124 --------ITGVLEQESILMNEVFNHFITKKTPFVTLKAGITLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+++ + WI+S+TSR +R +DA++VG TV D+P LTAR GH P+RIVL
Sbjct: 164 SATSDSKWITSETSRYDAHHIRSINDAILVGAQTVIHDDPSLTARIPNGHHPIRIVLDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHD 343
L+ P A + APT + T + A ++ + L + GV V+ D + ++V++ +
Sbjct: 224 LSTPLTAKVVTDQMAPTWIFTTKQADKEKRAALEAAGVNVIMTDGGTRVPLQEVLQVLGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R S++ E GG + AS + L+ K+ ++APK+IGG+ +P+ G+ MS A++L
Sbjct: 284 RQVSSLMIEGGGQVNASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELD 343
Query: 404 DICYEQVGPDMLISGF 419
+ EQ+G D+ I+G+
Sbjct: 344 HLSIEQMGKDIKITGY 359
>gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
Length = 389
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 196/388 (50%), Gaps = 42/388 (10%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y+ RA +A K G+T+P+P G +I G++ GEGY G AE A+ +
Sbjct: 14 KMTDQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKD-GRIIGEGYHKKYGELHAERNAIAS 72
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
GA Y+ +EP CH T A+++ I +VV+G R+P + G+ V+ LR
Sbjct: 73 LTESAEGAVIYVTLEPC-CHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRK 131
Query: 160 QGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
G+ V +GE+ C +N H T + P+ V KYAMTLD
Sbjct: 132 AGVTVVEDFMGEE------------CDRLNPVFFHYITMKTPYVVMKYAMTLD------- 172
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +G + WI+S SR V +R + ++VG TV D+P L R G +
Sbjct: 173 -----GKIATKTGASKWITSLASRKEVQHMRHQYMGIMVGIGTVLEDDPMLNVRVEGWKS 227
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVT---QRGARRKFQKYLASRGVEVV----EFD 330
P+RIV L + ++ + + +V Q+ K K L +RGVE + E +
Sbjct: 228 PVRIVCDSKLRIQLDSQIVKSAKKYRTIVAYADQKNTGEKI-KILHTRGVETIYCPDEKN 286
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ + +M +RG SIL E GGTL SA+ +G++ +V AFVAPK+ GG TPV
Sbjct: 287 QIDLKRLMIDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEG 346
Query: 391 LGMVEMSQALDL--IDICYEQVGPDMLI 416
+G+ S+A++L DIC Q+G D+ I
Sbjct: 347 VGVKFPSEAVELKYTDIC--QIGQDIRI 372
>gi|403384160|ref|ZP_10926217.1| riboflavin biosynthesis protein ribD [Kurthia sp. JC30]
Length = 366
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 193/382 (50%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y++ A D+A + G T+P+P G +I + G + G G G AEV A G
Sbjct: 5 DAYYMQLALDLASSARGNTNPNPMVGAVI-VNNGVIVGTGLHRKAGEPHAEVHAFRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G + LV ++G+ RVVV +++P + G+ ++ LR G++
Sbjct: 64 HAKGATLYVTLEPCSHYGKTPPCANLVKESGVKRVVVAMKDPNPSVAGRGIQLLRDAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EA L N IH + PF V KYAMT D G
Sbjct: 124 VEVG--------VLEAEAYTL--NERFIHNMLTERPFVVAKYAMTAD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA S+G + WI++ +R+ V R D ++VG TV DNP LT R G P+RI
Sbjct: 162 KIATSTGDSRWITADDAREDVHLYRHEMDGILVGIGTVLADNPSLTTRLLTKEGKNPVRI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDV 337
VL L P AN+ ++A T+++T + A ++ L ++GVEV+ + D L+
Sbjct: 222 VLDSNLQTPLSANVAQTTEARTMIITAKDAEESREQALVAQGVEVIRVARQADGLDLDAA 281
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + G IL E G + AS L+ K ++APKI+GG ++ TPV+ + M
Sbjct: 282 LQALYQAGVTDILVEGGAGVHASFFRQQLVQKAIIYMAPKILGGAHSITPVAGPDVTWMR 341
Query: 398 QALDLIDICYEQVGPDMLISGF 419
A+D+ + VG D+ I +
Sbjct: 342 DAIDMEFRTVDFVGNDLRIIAY 363
>gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
gi|167710137|gb|EDS20716.1| riboflavin biosynthesis protein RibD [Clostridium sp. SS2/1]
Length = 361
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 32/377 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A K G+T+P+P G +I KV GEGY G AE A++ +G
Sbjct: 1 MRRAIELAKKGCGYTNPNPLVGAVIVKDQ-KVIGEGYHEKIGGLHAERNALKNCIEDPKG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP CH T AL++AGI +V VG +P + G ++ L G++
Sbjct: 60 AEIYVTLEPC-CHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIET-- 116
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ I+EE C +N H + +P++ KYAMTLD GKIA
Sbjct: 117 -----ETGILEE---ECRQLNDIFFHYIQNDIPYTALKYAMTLD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
++G + WI+ + +R V LR + A++ G TV D+P L AR G+ P+R++
Sbjct: 157 TATGESKWITGEEARRHVHTLRHQYAAIMAGIGTVLADDPMLNARIEHGNDPIRVICDSN 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEYF 341
L + E +N+ + + PTI+ T + K K L +G ++++ +N ++V++
Sbjct: 217 LRISEGSNIVKTAREIPTIIATISKDQEKIAK-LEQKGCKILKTSEQDGKVNVKEVLKQL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S+L E GG L S I + +HKV+A++APK+ GG+ A TPV G+ + +AL
Sbjct: 276 RNMEIDSVLVEGGGILNESLIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALV 335
Query: 402 LIDICYEQVGPDMLISG 418
++ +G D+L+ G
Sbjct: 336 FDELKATPLGNDILLEG 352
>gi|402302067|ref|ZP_10821187.1| riboflavin biosynthesis protein RibD [Selenomonas sp. FOBRC9]
gi|400381054|gb|EJP33858.1| riboflavin biosynthesis protein RibD [Selenomonas sp. FOBRC9]
Length = 358
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 186/375 (49%), Gaps = 28/375 (7%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A +A+ + G TSP+P G +I G V G G+ A G AE+ A+ G RGAT
Sbjct: 4 ALHLAEFARGRTSPNPLVGAVIVRD-GIVVGSGWHRAAGEPHAEIHALRMAGELARGATL 62
Query: 112 YLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP HG A++ AGI VV + +P + G + LR+ G++V
Sbjct: 63 YVTLEPCSHHGRTGPCAEAVIAAGIAHVVTALSDPNPVVAGHGIERLRAAGIEV------ 116
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
+ EEAR+ N + ++ PF K AMTLD GK A+ +G
Sbjct: 117 TTGVLSEEARRQ----NEVFLKWVVTKRPFVTLKTAMTLD------------GKTASRTG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLTQTLN 288
+ WI+ +R RV + R DA++VG TV D+P LT R H G P+R+VL T
Sbjct: 161 ASQWITGAEARTRVHEWRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTAR 220
Query: 289 LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEYFHDRGY 346
P +A L A TI+ A K L + G EVV F + ++ +M++
Sbjct: 221 TPHDAKLLTDGAARTIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREEL 280
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
S+ E G ++ S +S+GL+ KV AF+AP ++GG +APT V G AL L D
Sbjct: 281 TSVFVEGGASVHWSFLSAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRLTDTT 340
Query: 407 YEQVGPDMLISGFLQ 421
E+VG D+L++G+ Q
Sbjct: 341 VERVGADILMTGYPQ 355
>gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
Eklund]
gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
Eklund]
Length = 372
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 204/382 (53%), Gaps = 31/382 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++++A +++ AG+T P+P G +I K+ G+GY G AEV A++
Sbjct: 5 FMKKAIELSKLGAGYTYPNPLVGAVIVKDN-KIIGQGYHERFGGLHAEVNALKNATEDVT 63
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + +V++GI V+VG+R+P + + G+ + L+ G++V V
Sbjct: 64 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVTV 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I EE K +N I T++ PF + K AMTLD GKIA
Sbjct: 124 -------GIFEEEIKK---INEIFIKYITTKKPFCILKTAMTLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+G + WIS++ SR V +R R ++VG TV +D+P LT R G RI++
Sbjct: 162 TVTGDSKWISNEISRQYVHKIRHRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVD 221
Query: 285 QTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFH 342
+P + + ++ S TI+ T + A ++ + +G EV+ I N + D+ +
Sbjct: 222 SKGRIPLNSKVLNLDSKEKTIIATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMN 281
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G + SIL E GGTL SA++ G++ KV +F++PKIIGG++A TPV+ G+ +S A
Sbjct: 282 ELGKINIDSILLEGGGTLNYSALNEGIVDKVISFISPKIIGGQDAKTPVAGEGIKNISDA 341
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
+ +I + D++I G+++
Sbjct: 342 VTFHNIEISRFEEDVVIEGYIK 363
>gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 371
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---EA 101
D Y+ RA +IA + G T +P GC+I K+ G+G G AEV A+ ++
Sbjct: 8 DIFYMERALEIAREGTGKTKTNPLVGCVIVKDD-KIIGQGAHLKFGENHAEVNAILDAKS 66
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGAT Y+N+EP +G +V+ GI RVV+G +P + + G+ ++ L
Sbjct: 67 RGEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDA 126
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V + EE CL +N ++ PF V K M+LD
Sbjct: 127 GISV-------TEGLCEE---ECLNLNERFFTYLKNKRPFVVLKSGMSLD---------- 166
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPM 279
GKIA SG + WI+S+ SR +LRG+ DA++VG TV D+P L RH + P+
Sbjct: 167 --GKIATESGESKWITSEFSRAHGHELRGQLDAIMVGIGTVLADDPSLNTRHCKYKNNPI 224
Query: 280 RIVLTQTLNLPEEANLW--DVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDI-LN 333
RI+ +L +P +A + D+ I T+ + K +K A + VEV+ E D ++
Sbjct: 225 RIITDSSLRIPLDAKVLRDDLDSIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVD 284
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+D+ME D SIL E G TL A + + L+ K + F+AP ++G K P + +L +
Sbjct: 285 LKDLMEKLKDYDISSILLEGGRTLNAEMLKNNLVDKFYFFIAPILLGSKGIPA-IGDLEI 343
Query: 394 VEMSQALDLIDICYEQVGPDMLISG 418
E+ A+ + D+ E++ D+L++G
Sbjct: 344 DELKDAIRIKDMKCEKLFDDILVTG 368
>gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 372
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 36/385 (9%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE---AGG 103
+Y+ A ++A+K GFT +P GC+I ++ G GY G AE A+E G
Sbjct: 9 SYMSLAMELAEKGKGFTLTNPMVGCVIVNDD-RIIGRGYHKKFGDLHAETMAIEDAKKNG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G+T Y+N+EP CH A+++ I +VV+ +P + + G+ ++ L G
Sbjct: 68 ESLEGSTLYVNLEPC-CHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V G I+EE L +N H ++ PF K AMTLD
Sbjct: 127 IEV-VEG------IMEE---EGLKLNEEFFHFIKTQRPFVTMKSAMTLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GKIA+ +G + WISS+ SRD V LR ++A++VG TV +D+P L R +G P +
Sbjct: 166 -GKIASVTGDSKWISSQISRDYVHKLRAENNAIMVGIGTVLKDDPSLNVRIYGNYKNPTK 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDILNSR-DVM 338
I++ L +P +A L SDAPTI+ G K+ K V ++ + R D++
Sbjct: 225 ILVDSKLRIPLDAKLLSSSDAPTIIACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLL 284
Query: 339 EYF---HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ F D S+L E GG L S + L+ ++ F+ PKIIGG + +PV+ G+
Sbjct: 285 DLFSKLKDFDICSVLLEGGGNLNYSMLRENLVDRLIFFIGPKIIGG-SGLSPVAGEGITL 343
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
M A+ + D E++G D+LI+ ++
Sbjct: 344 MKDAIKIKDFQVEKMGQDILINAYV 368
>gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
Length = 371
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 190/382 (49%), Gaps = 27/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A K+ G TSP+P G ++ G++AG G GT+ AEV A+
Sbjct: 3 DEDYMDLALSLARKTIGQTSPNPCVGAVV-VKDGQIAGMGAHLKAGTQHAEVHAIRMADG 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA Y+ +EP HG + L+ ++GI RVV+ +P + G+ + L + G++
Sbjct: 62 LARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ + EE +N+ H + P+ K A + D G
Sbjct: 122 VEV---GIRREEAEE-------INSAFFHFMRTSRPYVTIKAAASFD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
K AA++G + WI+S SR+ V LR DA++ G NTV DNP+LTAR GG P+R++
Sbjct: 160 KTAANTGDSQWITSPESREDVHRLRHEHDAILTGVNTVIHDNPQLTARLPRGGKNPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEY 340
L TL +P +A + AP I+ T + + + G E+V F + + + V+E
Sbjct: 220 LDSTLRIPGDAAILHDQKAPVIIFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEE 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
R LS+ E G + AS I GL ++ + APKIIGG+ A + G+ M Q+
Sbjct: 280 LGTRQILSVFVEGGSEIHASFIKEGLFQQIILYAAPKIIGGRKAVPFIGGEGISSMDQST 339
Query: 401 DLIDICYEQVGPDMLISGFLQP 422
L E++GPD+ I QP
Sbjct: 340 PLAFKSAERIGPDLKIIAVPQP 361
>gi|410583363|ref|ZP_11320469.1| riboflavin biosynthesis protein RibD [Thermaerobacter subterraneus
DSM 13965]
gi|410506183|gb|EKP95692.1| riboflavin biosynthesis protein RibD [Thermaerobacter subterraneus
DSM 13965]
Length = 443
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 204/405 (50%), Gaps = 39/405 (9%)
Query: 32 NSAPVFCK----FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
+APV + R D ++RRA D+A ++ G T P+P G +I G V GEGY
Sbjct: 23 GAAPVAGRARLAVDREADRHFMRRALDLAARAGGRTHPNPMVGAVI-VRDGVVVGEGYHR 81
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNP 145
G AEV+A+ + RGAT Y+ +EP CH T A++ AG+ RVVV + +P
Sbjct: 82 RAGEPHAEVEALRSARDQARGATLYVTLEPC-CHHGRTPPCTEAILAAGLRRVVVAMVDP 140
Query: 146 LQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKY 205
+ G+ + L G++V + EA ++ L A ++HR R P KY
Sbjct: 141 DPRVAGRGLSVLAQAGVEV---------AVGVEADRALRLNEAYVVHRVLGR-PMVTAKY 190
Query: 206 AMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDN 265
AMTLD G+IA + G + WI+ +R V LR R DA++VG TV D+
Sbjct: 191 AMTLD------------GRIATARGESRWITGPRARRWVHRLRDRVDAILVGVGTVLADD 238
Query: 266 PRLTAR-HGGGHTPMRIVLTQTLNLPEEANLWDV---SDAPTIVVTQRGARRKFQKYLAS 321
P LT R H GG P+R++L P +A + S APT V A L +
Sbjct: 239 PSLTVRWHPGGRDPVRVILDSHARTPPDAQVIRAARHSPAPTWVAVTPQAPAVRTARLEA 298
Query: 322 RGVEVVEFDI-----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAP 376
GV+V+ ++ ++ RG + +L E G ++ S ++GL+ +V AF+AP
Sbjct: 299 AGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGGASVHGSFFAAGLVDRVVAFIAP 358
Query: 377 KIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
K++GG+ AP P+ + G+ ++ A L + ++G D +ISG+L+
Sbjct: 359 KLVGGRAAPGPIGDPGVDALAAAPALHRPTWRRIGEDWMISGYLR 403
>gi|452994503|emb|CCQ93907.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Clostridium ultunense Esp]
Length = 364
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 188/384 (48%), Gaps = 32/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A + G T P+P G +I ++ G G GT AEV A++ G
Sbjct: 3 DEFYMNLAFALAASTEGRTWPNPMVGAVIVKER-RIVGFGAHLKAGTPHAEVHALKMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G T Y+ +EP +G + ++ AG+ RVVV +P + G+ V +R G+
Sbjct: 62 EAEGGTLYVTLEPCSHYGRTPPCADQIIAAGLKRVVVATLDPNPLVSGKGVEKMRKAGIH 121
Query: 164 VHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V LGE+ ++ N H T R PF+V K AMTLD
Sbjct: 122 VEVGLGEEKGKRL-----------NEVFFHYITKRRPFTVVKMAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GKIAA +G + W+S +R+ V LR ++DAV+VG TV D+P LT R GG P+RI
Sbjct: 159 GKIAAYTGDSRWVSGAAAREYVHRLRNQADAVMVGIGTVLADDPLLTTRLPEGGRNPLRI 218
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEY 340
V+ L +P A + D S APT++ GA L +G EV+ R D+ E
Sbjct: 219 VVDTRLRIPLTARVLDTSAAPTLIACGEGADAAKMAQLREKGAEVLPLPEREGRVDLKEL 278
Query: 341 FHDRGYLSI---LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
G I L E G + S + GL+ KV F++PK+IGGK PTP G M
Sbjct: 279 LRLLGLREIAFLLVEGGAEMNGSLLMEGLVDKVLLFLSPKLIGGKG-PTPFGGKGFPRMD 337
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
+AL L ++ E+VG D I G+L+
Sbjct: 338 EALPLTEVQVEKVGEDWFIQGYLR 361
>gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum ATCC
824]
gi|337735807|ref|YP_004635254.1| riboflavin biosynthesis pirimidine deaminase/pirimidine reductase
RibD [Clostridium acetobutylicum DSM 1731]
gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum ATCC
824]
gi|336292253|gb|AEI33387.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum DSM
1731]
Length = 383
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 200/397 (50%), Gaps = 36/397 (9%)
Query: 38 CKFSRAEDA-----AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTK 92
CKF + ++ A+++RA +IA+K +G+ +P+P G +I K+ GEGY G
Sbjct: 8 CKFIKFKEVFKLNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDN-KIVGEGYHEKFGGN 66
Query: 93 PAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRG 151
AEV A+ G G+ Y+ +EP +G + A+V+AGI RV++ + +P +
Sbjct: 67 HAEVNALNMAGKDAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVST 126
Query: 152 QAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDV 211
+ ++ L+ G++V I +K +N I T++ PF K A TLD
Sbjct: 127 KGIKILKENGIEV----------ITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLD- 175
Query: 212 ILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR 271
GKI SG + WIS +TSR V LR + +++VG T DNP LT R
Sbjct: 176 -----------GKICTVSGESRWISGQTSRKYVHHLRSKYMSIMVGVGTAINDNPLLTTR 224
Query: 272 HGGGH--TPMRIVLTQTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
G + +P+ I++ L +P++ +++ + + I+ T A + + L + GV +++
Sbjct: 225 IEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKIIIATTEYADKNKENELINMGVSIIK 284
Query: 329 FDILNSRDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
N R ++Y D G S+L E G L S I I K+ F+AP I+GG+ A
Sbjct: 285 TPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFSFIKEENIDKIMCFIAPMIVGGEKA 344
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
V G+ ++ ++ + D+ E++G D+L+SG+L
Sbjct: 345 KGAVGGKGIEKLKDSIKIYDMDSEKIGEDILVSGYLN 381
>gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
Length = 367
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 36/392 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D AY++RA +A K G T+P+P GC+I G + GEG+ GT AEV A+ G+
Sbjct: 5 DIAYMKRAISLARKGLGRTAPNPAVGCVIVCD-GVIVGEGWHKKAGTPHAEVHALAMAGA 63
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP CH T AL+ AG+ RVV G+ +P + G+ ++ LR G+
Sbjct: 64 AAKGADVYVTLEPC-CHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQAGV 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++E+ C +N I T+ +P+ ++K AMT+D
Sbjct: 123 RVEV-------GLLEQ---QCKELNKGFIKSVTTGMPYLLYKTAMTMD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
G IA +GH+ W++ + SR V LR DAV+VG +TV DNP+LT RH G P+R++
Sbjct: 161 GNIATVTGHSRWVTGEESRRLVHRLRAHCDAVMVGVDTVIADNPQLTVRHVRGRDPLRVI 220
Query: 283 LTQTLNLPEEANLWDVSDAP-TIVVTQRGARRKFQKYLASRGVEVV---EFD-ILNSRDV 337
+ L PE N+ + +DA T++ T Q+YL S+G +++ E+D + D+
Sbjct: 221 VDTRLRTPESVNVLNGTDAGRTVIATCETNPDIHQRYL-SQGADILVCREYDGRVEMTDL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ RG SIL E G LA + LI + F APK++G AP + G+ M
Sbjct: 280 LRKLAVRGVQSILVEGGSRLAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQ--GISTMD 337
Query: 398 QALDLIDICYEQVGPDMLISGFLQPIPDLMPV 429
+A+ L GPD+++ + +P+ +PV
Sbjct: 338 EAIQLEVQRVGMSGPDVVV--YARPVGVCLPV 367
>gi|339009836|ref|ZP_08642407.1| riboflavin biosynthesis protein RibD [Brevibacillus laterosporus
LMG 15441]
gi|338773106|gb|EGP32638.1| riboflavin biosynthesis protein RibD [Brevibacillus laterosporus
LMG 15441]
Length = 384
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 202/387 (52%), Gaps = 28/387 (7%)
Query: 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQ 97
C+ D A+++ A +A+ ++ TSP+P G +IA + G + G G G AE+
Sbjct: 12 CENQVLLDQAFMKIAIQLAEGASHQTSPNPTVGAVIAKN-GSIVGLGAHLRAGESHAEIH 70
Query: 98 AVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRA 156
A+ G GAT Y+ +EP +G V AL+ AG+ RVV+ I +P + G+ V
Sbjct: 71 ALRMAGEKAAGATVYVTLEPCSHYGKTPPCVQALLDAGVARVVIAIEDPNPLVAGKGVAT 130
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L+ G+ D+Q ++E+ + C N H ++ PF K A TLD
Sbjct: 131 LKHAGI-------DVQVGVLEKEAREC---NESFFHYIHTKRPFVTLKTASTLD------ 174
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGG 275
GK+A ++G + WI+S+ +R V R +SDA++VG NTV +D+P LTAR + G
Sbjct: 175 ------GKLATATGDSKWITSELARREVHAERAKSDAILVGINTVIKDDPLLTARLYEKG 228
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILN 333
P+R+VL QTL +P+ A + + +P + T R A ++ +L ++G+ + + D +
Sbjct: 229 RQPIRVVLDQTLRIPKTATILKDTTSPVWIFTTRRASQQKVDFLRAKGIRITVQQEDQVT 288
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V++ + +S+L E G ++ + + + I KV A+VA ++GG +P G+
Sbjct: 289 IPFVLQTLGEAEIVSVLVEGGSKISGAFLEAQAIQKVIAYVAFTLVGGVESPVAYGGNGI 348
Query: 394 VEMSQALDLIDICYEQVGP-DMLISGF 419
M A+ L D+ E+V ++ I+G+
Sbjct: 349 PLMKDAIQLRDVAVEKVSEQEVKITGY 375
>gi|386715967|ref|YP_006182291.1| riboflavin biosynthesis protein RibD [Halobacillus halophilus DSM
2266]
gi|384075524|emb|CCG47019.1| riboflavin biosynthesis protein RibD [Halobacillus halophilus DSM
2266]
Length = 371
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 194/379 (51%), Gaps = 28/379 (7%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
+ D Y++ A +A ++ G TSP+P+ G ++ ++ G G G AEV A++
Sbjct: 2 SRDEQYMKTAIQMAGETVGQTSPNPSVGAIVIKDN-ELVGLGVHVKAGEAHAEVHALQMA 60
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G +GA Y+ +EP +G A++ AGI RVV+ +P + G+ + +R G
Sbjct: 61 GEKAKGAEIYVTLEPCSHYGKTPPCAKAIIDAGIKRVVIASHDPNPEVSGKGINMMREAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EEA + +N H + P+ K AM+LD
Sbjct: 121 IEVET------NVLTEEADR----LNKDFFHFIQTGEPYVRLKAAMSLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GKIA S+G + WI+ K +R+ R SDA++VG TV D+P LT R G G+ P+R
Sbjct: 160 -GKIATSTGESQWITGKEAREDGHTYRHISDAILVGIQTVLSDDPTLTTRIEGKGNNPIR 218
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF-QKYLASRGVEVVEFDI--LNSRDV 337
+V L +P + L +APT + T + A + QK + V++ D+ ++
Sbjct: 219 VVFDSNLRIPLSSKLIQNQEAPTWIFTGKHASKNMVQKLQDVDHIRVIQQDVDQIDIHQA 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++Y ++ S+L E GGT+A + + +G + + ++APK+IGGK+A +PV+ G+ E+
Sbjct: 279 LQYLGEQKVTSLLVEGGGTIADAFVRAGKVEETITYIAPKLIGGKDASSPVAGKGISELK 338
Query: 398 QALDLIDICYEQVGPDMLI 416
D + EQ+G D+ I
Sbjct: 339 NVPDYQVVSNEQIGEDIKI 357
>gi|354557522|ref|ZP_08976780.1| riboflavin biosynthesis protein RibD [Desulfitobacterium
metallireducens DSM 15288]
gi|353550316|gb|EHC19753.1| riboflavin biosynthesis protein RibD [Desulfitobacterium
metallireducens DSM 15288]
Length = 376
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 206/374 (55%), Gaps = 32/374 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+RRA +A ++ G TSP+P GC+I + ++ GEG+ + GT AEV A+
Sbjct: 9 ANDENYMRRALQLAAQAIGKTSPNPLVGCVIVKNN-EIIGEGFHHKAGTPHAEVHALRQA 67
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G + ATAY+++EP G + ALV++GI RVV+ +++P H+ G+ + LR G
Sbjct: 68 GEKTKDATAYVSLEPCSHFGRTPPCADALVKSGIHRVVIAMQDPNPHVSGEGINRLREAG 127
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+QV V EA K +N P + + +P+ V+K A TLD
Sbjct: 128 IQVEV------GLCAAEAEK----LNQPFLKAIQTGLPYLVYKVASTLD----------- 166
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA +G + WISS++SR +LR + D ++VG TV +D+P LT R G P+R+
Sbjct: 167 -GKIATETGDSRWISSESSRLYAHELRNQLDVILVGSETVVKDDPALTCRLPEGRDPVRV 225
Query: 282 VLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDILNSRDVME 339
++ +L +P EA L +S A I+ T + A ++L + VEV ++ + +
Sbjct: 226 IVDGSLKIPLEAQVLSPLSSATCIIATSQAASPTKIEHLNNLPQVEVWQYPTARHVPLKK 285
Query: 340 YFHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
D RG+ SIL E GG LA + + L+ +V F+APK+IGGK P+P+S L + +M
Sbjct: 286 LLLDLVTRGWNSILLEGGGGLAGALFQAELVDEVDFFIAPKLIGGK-GPSPLSGLRIDKM 344
Query: 397 SQA--LDLIDICYE 408
S+A LD+ +I E
Sbjct: 345 SKAIPLDIEEISLE 358
>gi|435853632|ref|YP_007314951.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase [Halobacteroides halobius DSM 5150]
gi|433670043|gb|AGB40858.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase [Halobacteroides halobius DSM 5150]
Length = 363
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 200/380 (52%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+++A +A ++ G TSP+P G +I G++ G+GY + G AEV A+E
Sbjct: 3 DQQYMKQALRLAKQAQGRTSPNPLVGAIIVKE-GEIIGQGYHHYAGGAHAEVNALEDAKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G +++AGI RVV+ +++P + GQ V LR G++
Sbjct: 62 EVVGSTMYVTLEPCTHYGKTPPCTETIIEAGIKRVVIAMKDPNPKVAGQGVERLRRAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EA++ +N I T++ PF + K A+TLD G
Sbjct: 122 VDV------GLLAVEAKE----LNEIFIKYITTKRPFVILKNAVTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA +G + WI+ SR+ V LR + DA++VG TV DNPRLT R GG P+RI+
Sbjct: 160 KIATKTGDSKWITGTKSREFVHKLRDQVDAILVGIGTVLSDNPRLTTRLSQGGQDPIRII 219
Query: 283 LTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVME 339
L L + EA + S A TIV T A + ++ L GV+VV+ ++ ++E
Sbjct: 220 LDSKLRISSEAKVIKQESKAKTIVATTDQASLEKKEELEKNGVKVVKVGNKAVDLELLLE 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+L E G + AS + L+ K++ F+APKIIGG A + V+ G+ ++
Sbjct: 280 ELGKQEITSLLVEGGSQVNASFWEANLVDKLYYFIAPKIIGGSEAISVVTGAGVEKVKDG 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
+ L ++VG D+L+ G+
Sbjct: 340 VKLDIKTIKEVGDDILMIGY 359
>gi|404496485|ref|YP_006720591.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter metallireducens GS-15]
gi|418064787|ref|ZP_12702163.1| riboflavin biosynthesis protein RibD [Geobacter metallireducens
RCH3]
gi|78194088|gb|ABB31855.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter metallireducens GS-15]
gi|373563060|gb|EHP89261.1| riboflavin biosynthesis protein RibD [Geobacter metallireducens
RCH3]
Length = 370
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 187/377 (49%), Gaps = 30/377 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A + G TSP+P GC+I G + GEG+ GT AEV A+ G RG
Sbjct: 9 MKRALALARRGKGKTSPNPAVGCVI-VRDGAIVGEGWHRKAGTPHAEVHALRQAGELARG 67
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
A Y+ +EP G ALV+AG+ RV VG+ +P + G+ + LR G++V V
Sbjct: 68 ADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLRVAGIEV-VT 126
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G I EA C +N P + T+ +PF + K AMT+D GK A
Sbjct: 127 G-------IREA--ECRRLNEPFVKHVTTGLPFVILKSAMTMD------------GKTAT 165
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+SG + WI+++ SR V LR DA++VG TV D+P+LTAR G P+R+V+ +L
Sbjct: 166 ASGDSRWITNEKSRRYVHKLRSMVDAIMVGVGTVLADDPQLTARIPRGKDPVRVVVDSSL 225
Query: 288 NLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE----FDILNSRDVMEYFH 342
+P A L S A T+V T R + K L S G EV+ ++ RD++
Sbjct: 226 RIPSGARMLHQESPATTVVATVSEDRNRIVK-LESAGAEVLRCHAVMGRIDLRDLLARLG 284
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
RG SIL E G LA A+ +GLI K F APK +GG M L
Sbjct: 285 ARGVQSILLEGGSELAGEALRAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRL 344
Query: 403 IDICYEQVGPDMLISGF 419
D+ + G D++I +
Sbjct: 345 KDVSVRRFGDDVMIEAY 361
>gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
Length = 366
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A D+A+++ G T +P GC+I + G +AG G +GT AE+ A+ G+
Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVIVKN-GALAGVGTHLERGTPHAEIHALNMAGT 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G S L+ G+ RVVV +P + G+ ++ LR+ G++
Sbjct: 65 KAAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + R+ L +N I T+ PF K A TLD G
Sbjct: 125 V----------VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +G + WISS+ SR+ V LR R ++VG +TV DNP LT R GG P+RI+
Sbjct: 163 KIASKTGDSKWISSEESRELVHTLRHRHQGIMVGVSTVIADNPSLTTRLSVGGLHPVRII 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVME 339
+ +L +P ++++ APT ++T A + L RG++V+ E ++ + +
Sbjct: 223 VDSSLRMPLDSHVVSDGTAPTWILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIA 282
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G SIL E GGTL + + L+ ++ F+APKIIGG +AP G +M+QA
Sbjct: 283 KLGQMGISSILLEGGGTLNGAMLEQKLVDRLIQFIAPKIIGGYDAPGNFMFSGYEQMNQA 342
Query: 400 LDLIDICYEQVGPDMLISGF 419
+ L + +++G ++ I+G
Sbjct: 343 IVLTGLESKRLGDNIYITGI 362
>gi|389573633|ref|ZP_10163706.1| riboflavin biosynthesis protein RibD [Bacillus sp. M 2-6]
gi|388426719|gb|EIL84531.1| riboflavin biosynthesis protein RibD [Bacillus sp. M 2-6]
Length = 356
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 194/375 (51%), Gaps = 27/375 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A + A+ G TSP+P G +I ++ G G G AE+ A++ G +G
Sbjct: 1 MKLALENAEAMKGQTSPNPLVGAVIVREN-EIVGVGAHMKAGEPHAEIHALKMAGDKAKG 59
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP HG ALV+AG+ +VVV +P + G+ + L+ G+QV
Sbjct: 60 ATIYVTLEPCSHHGRTGPCAEALVKAGVEKVVVAALDPNPLVAGRGIAILQDAGIQV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
I + +L+N H T + PF K +TLD GKIA+
Sbjct: 117 -------ITGVMEQESILMNEVFNHFITKKTPFVTLKAGITLD------------GKIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
++ + WI+S+TSR +R +DA++VG TV D+P LTAR GH P+RIVL L
Sbjct: 158 ATSDSKWITSETSRYDAHHIRSINDAILVGAQTVIHDDPSLTARIPNGHHPIRIVLDSKL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVMEYFHDR 344
++P A + APT + T + A + + L + GV V+ D + ++V++ +R
Sbjct: 218 SIPLTAKVVTDQMAPTWIFTTKQADEEKRAALEAAGVSVIMTDSDIRVPLQEVLQVLGER 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
S++ E GG + AS + L+ K+ ++APK+IGG+ +P+ G+ MS A++L
Sbjct: 278 NISSLMIEGGGQINASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQ 337
Query: 405 ICYEQVGPDMLISGF 419
+ E +G D+ I+G+
Sbjct: 338 LSLEPLGKDIKITGY 352
>gi|403668251|ref|ZP_10933527.1| riboflavin biosynthesis protein ribD [Kurthia sp. JC8E]
Length = 366
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 192/382 (50%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A + G T+P+P G +I G + G G G AEV A G
Sbjct: 5 DEYYMQLALDLAVSAKGNTNPNPMVGAVI-VQNGVIVGTGLHRKAGEPHAEVHAFRMAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G + LV ++G+ RVV+ + +P + G+ V+ LR G++
Sbjct: 64 HAKGATLYVTLEPCSHYGKTPPCANLVKESGVKRVVIAMEDPNPSVAGRGVKLLRDAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V I EA+ L N IH + PF V KYAMT D G
Sbjct: 124 VEVG--------ILEAQAYKL--NERFIHNMLTSRPFVVSKYAMTAD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA S+G + W++ +R+ V + R D ++VG TV D+P LT R G P+RI
Sbjct: 162 KIAVSNGDSRWVTGDDAREDVHEYRHEMDGILVGIGTVLADDPSLTTRLVSKEGKNPIRI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDV 337
+L + L P A + +DA TI+VT A + + L ++GVE++ L+ ++
Sbjct: 222 ILDRQLRTPLHAKVAQTADAKTIIVTAEDAAIEKAQALQAQGVEILRVATTEGQLHLEEM 281
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + RG IL E G + AS L+ KV ++APKIIGG ++ +PVS + MS
Sbjct: 282 LDALYTRGITDILVEGGAAVHASFFRQHLVQKVLIYMAPKIIGGAHSLSPVSGPDVEAMS 341
Query: 398 QALDLIDICYEQVGPDMLISGF 419
AL+ + +G D+ I +
Sbjct: 342 AALEFEYDAVDVIGNDLRIVAY 363
>gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Slackia heliotrinireducens DSM 20476]
gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Slackia heliotrinireducens DSM 20476]
Length = 371
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 197/384 (51%), Gaps = 34/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RRA ++A +AG+T+P+P G +I G+V GEG G AE A+ +
Sbjct: 4 DEKMMRRAIELARTAAGWTNPNPLVGAVI-VKDGRVIGEGCHERYGDLHAERNALASCTE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP G ALV+AGI RVVVG R+P + G+ + LR+ G+Q
Sbjct: 63 SPQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGIQ 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ED R+ C +N H T++ P+ V K+AMT D G
Sbjct: 123 VE---EDFL-------RQECDGINPVFFHFITTKTPYVVAKWAMTAD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA ++ A W+S + SR +LR R ++VG NTV D+P L AR G + P+RIV
Sbjct: 161 KIATATRDARWVSCEASRADTHELRHRLAGIMVGVNTVLADDPMLNARRGVPSNQPLRIV 220
Query: 283 LTQTLNLP-EEANLWDVSDAPTIVVT----QRGARRKFQKYLASRGVEVVEFDILNSR-- 335
+L +P + A + ++ P +V +G R L + GV+VV + +
Sbjct: 221 CDSSLRIPLDSALVRSATEVPVLVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVD 280
Query: 336 --DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+M + + G S+L E GGTL A+ SGL+ +V ++APK+ GG +APTPV G
Sbjct: 281 LAALMAHLGESGVDSVLVEGGGTLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPVGGAGA 340
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
M+ AL L + VG D+ ++
Sbjct: 341 ALMADALQLGKPQVDIVGDDVRLT 364
>gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
8239]
gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
8239]
Length = 365
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 197/386 (51%), Gaps = 39/386 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQ 160
GAT Y+ +EP CH T + A+++ RVVVG +NPL + G++++ LR
Sbjct: 61 STEGATIYVTLEPC-CHYGKTPPCIEAIIKNKFKRVVVGTLDQNPL--VSGKSIKILRES 117
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++E K C+ +N PF K+AMTLD
Sbjct: 118 GIEVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD---------- 157
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----H 276
GKIA + WI+++ SR+ V LR + +++VG NTV +DNP L R
Sbjct: 158 --GKIATKEFKSKWITNRKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELER 215
Query: 277 TPMRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
RIVL L +P ++ L + +++ T++ T + + L G+EV+E ++
Sbjct: 216 KHFRIVLDSKLRIPLDSEILKNQNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGK 275
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+N V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV
Sbjct: 276 ININQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGE 335
Query: 392 GMVEMSQALDLIDICYEQVGPDMLIS 417
G+ + A + ++ + D+LI
Sbjct: 336 GIRNVLDAFEFPEVNLKNFDKDILIE 361
>gi|421873191|ref|ZP_16304806.1| riboflavin biosynthesis protein RibD [Brevibacillus laterosporus
GI-9]
gi|372457773|emb|CCF14355.1| riboflavin biosynthesis protein RibD [Brevibacillus laterosporus
GI-9]
Length = 384
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 200/387 (51%), Gaps = 28/387 (7%)
Query: 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQ 97
C+ D A+++ A +A+ ++ TSP+P G +I G + G G G AE+
Sbjct: 12 CENQVLLDQAFMKIAIQLAEGASHQTSPNPTVGAVI-VKNGSIVGLGAHLRAGESHAEIH 70
Query: 98 AVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRA 156
A+ G GAT Y+ +EP +G V AL+ AG+ RVV+ I +P + G+ V A
Sbjct: 71 ALRMAGEKAAGATVYVTLEPCSHYGKTPPCVQALLDAGVARVVIAIEDPNPLVAGKGVAA 130
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L+ G+ D+Q + E+ + C N H ++ PF K A TLD
Sbjct: 131 LKHAGI-------DVQVGVFEKEAREC---NESFFHYIHTKRPFVTLKTASTLD------ 174
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGG 275
GK+A ++G + WI+S+ +R V R +SDA++VG NTV +D+P LTAR + G
Sbjct: 175 ------GKLATATGDSKWITSELARREVHAERAKSDAILVGINTVIKDDPLLTARLYEKG 228
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILN 333
P+R+VL QTL +P+ A + + +P + T R A ++ +L ++G+ + + D +
Sbjct: 229 RQPIRVVLDQTLRIPKTATILKDTTSPVWIFTTRRASQQKVDFLRAKGIRITVQQEDQVT 288
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
V++ + +S+L E G ++ + + + I KV A+VA ++GG +P G+
Sbjct: 289 IPFVLQTLGEAEIVSVLVEGGSKISGAFLEAQAIQKVIAYVAFTLVGGVESPVAYGGNGI 348
Query: 394 VEMSQALDLIDICYEQVGP-DMLISGF 419
M A+ L D+ E+V ++ I+G+
Sbjct: 349 PLMKDAIQLRDVAVEKVSEQEVKITGY 375
>gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
13124]
gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
13124]
Length = 371
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 197/386 (51%), Gaps = 39/386 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++++A ++A K G+ +P+P G +I G++ G+GY G AE+ A+ +
Sbjct: 8 DEFFMKKALELARKGEGYVNPNPLVGAVIVKG-GEIIGQGYHEFFGGNHAEINAINSSIK 66
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQ 160
GAT Y+ +EP CH T + A+++ RVVVG +NPL + G++++ LR
Sbjct: 67 STEGATIYVTLEPC-CHYGKTPPCIEAIIKNKFKRVVVGTLDQNPL--VSGKSIKILRES 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++E K C+ +N PF K+AMTLD
Sbjct: 124 GIEVKV-------GVLE---KECIRLNEIFNFYIKENRPFIALKWAMTLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----H 276
GKIA + WI+++ SR+ V LR + +++VG NTV +DNP L R
Sbjct: 164 --GKIATKEFKSKWITNRKSREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELER 221
Query: 277 TPMRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
RIVL L +P ++ L + +++ T++ T + + L G+EV+E ++
Sbjct: 222 KHFRIVLDSKLRIPLDSEILKNQNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGK 281
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+N V+E ++ S+L E GG L + + + ++K++AFVAPK+ GGKNA TPV
Sbjct: 282 ININQVLECLKEKNIDSVLIEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGE 341
Query: 392 GMVEMSQALDLIDICYEQVGPDMLIS 417
G+ + A + ++ + D+LI
Sbjct: 342 GIRNVLDAFEFPEVNLKNFDKDILIE 367
>gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
Length = 355
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 197/372 (52%), Gaps = 30/372 (8%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGAT 110
RA +A+K+ G+T+P+P GC+I + ++ EGY G AE A+ + RGAT
Sbjct: 3 RAIALAEKARGWTNPNPLVGCVIVKND-EILAEGYHERIGGWHAERNAILNSNADLRGAT 61
Query: 111 AYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGE 169
AY+ +EP HG S L++ GI++V +G R+P + G+ V+ L++ G++V
Sbjct: 62 AYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEV----- 116
Query: 170 DLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASS 229
+ + R+ C +N H ++ P+ + KYAMT D GKIA SS
Sbjct: 117 -----VTDFMREECDRLNPIFFHYIQTKRPYVLLKYAMTAD------------GKIATSS 159
Query: 230 GHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNL 289
G + WI+ + +R +V + R + A++VG TV DNP L +R P+RIV +L
Sbjct: 160 GESKWITGELARAKVQETRHQYSAIMVGIETVLADNPMLNSRMPNAKQPVRIVCDSSLRT 219
Query: 290 PEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFHDR 344
P + L + + TI+ T +K ++ GVE++ + + R D+++ +
Sbjct: 220 PLDCQLVQTAKEYRTIIATVSDDLQKIAQF-QPLGVEILVCKVKDKRVDLQDLLQKLGEM 278
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
S+L E G +L SA+ G++++V ++APK++GG A TP+ G+ +SQA+ L +
Sbjct: 279 QIDSLLLEGGSSLNFSALQVGIVNRVHCYIAPKLVGGATAKTPIGGEGIGVLSQAVKLTN 338
Query: 405 ICYEQVGPDMLI 416
Q+G D+LI
Sbjct: 339 AQISQIGEDILI 350
>gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
alkenivorans AK-01]
gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
alkenivorans AK-01]
Length = 372
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 203/393 (51%), Gaps = 34/393 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+R+A +A+K G TSP+P G +I GKV G+G+ G AE+ A+E
Sbjct: 2 KKQDTQYMRQALALAEKGTGNTSPNPMVGAVI-VKDGKVIGQGWHKKAGGPHAEIFALEE 60
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G+ +GAT Y+ +EP + HG S A+++AGI +V+ I++P +G ++ L+
Sbjct: 61 AGADAKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPKAQG-GLKYLQEN 119
Query: 161 GLQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++ Q + E EARK N I T+ PF V K A TLD
Sbjct: 120 GVET-------QWGVCEAEARKQ----NEFFIKHVTTGRPFVVCKCAATLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
G+IA G + WI+ + SR V +R DA++VG NTVR D+P LTAR G G+
Sbjct: 160 ---GRIATRIGDSKWITGEESRAYVHKMRHAMDAILVGINTVRMDDPSLTARLEDGQGND 216
Query: 278 PMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DIL 332
P+R++L L++ P L SD+ T++ A + L G E+VE L
Sbjct: 217 PLRVILDSRLSMDPSAKMLRQDSDSGTLIFCGPQAPEVKRDALEKAGAEIVEAPEMSGFL 276
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N + +RG S+L E GG + +SA+ SG++ KV F APKI+ G + + G
Sbjct: 277 NLDFICRNLGERGLNSLLIEGGGHVHSSALKSGVVDKVCLFYAPKILCGDDGVPMFAGPG 336
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQPIPD 425
M+ +++L DI + G D ++ G++ + D
Sbjct: 337 PDFMADSIELKDITLHRFGNDFMVEGYVMDLFD 369
>gi|384047493|ref|YP_005495510.1| Riboflavin biosynthesis protein [Bacillus megaterium WSH-002]
gi|345445184|gb|AEN90201.1| Riboflavin biosynthesis protein [Bacillus megaterium WSH-002]
Length = 363
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A + G T P+P G +I ++ G G G AE+ A+ G +
Sbjct: 7 YMNIALQNAKATKGQTDPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGEQAK 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP HG ALV+AG+ +VV+ +P + G V L + G++V
Sbjct: 66 GATAYVTLEPCSHHGRTGPCAEALVKAGVKKVVIATLDPNPLVAGNGVNILENAGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+R+ + N ++ ++ PF K A+TLD GKIA
Sbjct: 124 ----ITGVCEEESRQMNEVFNKYIV----TKKPFVSLKSAITLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+S H+ WI+S+ +R V LR + ++VG NTV +DNP LT R GG +P+RIV+
Sbjct: 164 TASSHSKWITSEEARLDVHQLRHETAGILVGVNTVIKDNPELTTRIEGGRSPIRIVMDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF---DILNSRDVMEYFHD 343
L +P ++ L S APT V T + + ++ L +GVEV D +N D++ +
Sbjct: 224 LRMPLDSKLATDSLAPTWVFTSQNYSKGKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+ S+L E GG + A+ + + LI K+ ++APK+ GGK APT + G+ +M A+D+
Sbjct: 284 KFVSSLLIEGGGEVNAAFLENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVE 343
Query: 404 DICYEQVGPDMLISGF 419
+ +G D G+
Sbjct: 344 RLSITSIGKDFKFVGY 359
>gi|336115635|ref|YP_004570402.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 2-6]
gi|335369065|gb|AEH55016.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 2-6]
Length = 373
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 193/378 (51%), Gaps = 28/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A +A+ AG TSP+P G +A G +AG G K AE AVE G +
Sbjct: 9 YMQLALQLAESVAGQTSPNPPVGS-VAVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLAK 67
Query: 108 GATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA ++ +EP +G + L++ GI +V + +P + G+ + LR G++V
Sbjct: 68 GAEVFVTLEPCTHYGKTPPCADFLIEKGIKKVYIAALDPNPLVAGKGIEKLRQAGVEV-- 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ +++E + + P H ++ PF K AMT D GKIA
Sbjct: 126 -----ETGVLKEQAER---LYRPFFHFIQTKTPFVTVKTAMTAD------------GKIA 165
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQ 285
A + + WI+S+ +R LR R DA++VG TV +DNP LTAR G P+RIVL
Sbjct: 166 AETRDSKWITSEEARRDARWLRSRHDAILVGIQTVLQDNPLLTARLPHSGKNPIRIVLDT 225
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHD 343
L +P EA + + DAPTI+ A ++ ++ L EV L RDV+
Sbjct: 226 HLRIPPEAKVLN-GDAPTIIFCGSDAPKEKEQCLKQLNAEVARMPHARLLIRDVLAALGK 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+G +++L E G + +S + G + + ++APK++GG+NAP+P G +++ AL L
Sbjct: 285 KGMMTLLVEGGAAVNSSFLKEGAVQQYIFYIAPKVVGGQNAPSPFGGHGFGKVADALPLR 344
Query: 404 DICYEQVGPDMLISGFLQ 421
EQ+GPD+ I+ +Q
Sbjct: 345 FEKVEQIGPDLKITAAVQ 362
>gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
Length = 366
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 33/387 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ +A +A K G+TSP+P G ++ K+ GEG+ G AEV A+E G
Sbjct: 3 KDIYYMEKALTLARKGVGYTSPNPMVGAVVVRDD-KIVGEGHHRYYGGPHAEVYALEEAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G+T Y+N+EP +G V ++++G+ RVV+ + +P + G+ + L+ G+
Sbjct: 62 EKAFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++EE ++ +N I T+R+PF K A TLD
Sbjct: 122 EVTV-------GVLEEKARN---LNEVFIKNITNRMPFVYLKMAQTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
G +A SSG + W++ K +R V LR R DA++VG TV +D+PRLT R G G ++
Sbjct: 160 GYLATSSGDSRWVTGKKARQYVHRLRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIK 219
Query: 281 IVLTQTLNLPEEANLWDV-SDAPTIVVT-QRGARRKFQKYLASRGVEVVEFDI-----LN 333
IVL L +P AN+ + +DAP I+V R K + + VEV+ D+ +
Sbjct: 220 IVLDSKLKIPLTANILNQENDAPVIIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIP 279
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
++++ + +G S+L E GG + S + G + K+ F+APK++GG + + G
Sbjct: 280 IKELLINLNKKGISSLLVEGGGRVNYSFLKEGFVDKMLFFIAPKLLGGSDGVSVFDGKGA 339
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
M++ L E++G D+LI+G L
Sbjct: 340 EVMAKVKKLKKYKIEEIGEDILITGTL 366
>gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
DSM 12680]
gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
DSM 12680]
Length = 364
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 198/385 (51%), Gaps = 33/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A ++ G TSP+P G ++ V Y GT AE+ A+ G
Sbjct: 4 DEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEG-YHQLAGTPHAEIHALNQAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP CH T V A++ +GI RVVV I++P + GQ + L++ G+
Sbjct: 63 RARGATLYVTLEPC-CHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + EEAR++ N T+ +PF K AMT+D
Sbjct: 122 EVE------VGVLEEEARRA----NEFFFKFITTGMPFVALKTAMTMD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--GGGHTPMR 280
GKIA +G + W++ + +R V +LR DAV+VG TV +DNP L R G PMR
Sbjct: 160 GKIATRTGDSRWVTGEKARRFVHELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMR 219
Query: 281 IVLTQTLNLPEEANLWDVSDAP-TIVVTQRGARRKFQKYLASRGVEVVEF----DILNSR 335
++L L +P ++ + S+ T+VVT R A L GVEV++ D +
Sbjct: 220 VILDGRLEIPLDSQIVLTSNQQCTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLV 279
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
V+E G SIL E GG + AS + +GL+ KV+ F+APKI GG++APTPV G+
Sbjct: 280 PVLEELARLGVTSILVEGGGQVNASFLEAGLVDKVYWFIAPKICGGESAPTPVRGTGVEM 339
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
M QA L + D+LI+G+
Sbjct: 340 MDQARKLRQFDLSRFDDDVLITGYF 364
>gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
gi|225206725|gb|EEG89079.1| riboflavin biosynthesis protein RibD [Coprococcus comes ATCC 27758]
Length = 370
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 191/383 (49%), Gaps = 36/383 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA ++A K G+T+P+P G +I G + GEGY G AE A+ +
Sbjct: 3 DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKD-GSIIGEGYHEKCGELHAERNAIASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ I RVV+G R+P + G+ + LR G+
Sbjct: 62 SAEGATLYVTLEPC-CHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ED R+ C +N H T+ +P+ V KYAMT D
Sbjct: 121 RVE---EDF-------LREECDALNPVFFHYITTGLPYVVMKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WIS + +R V ++R A++ G TV D+P L R G +P+RI+
Sbjct: 159 GKIATKTGASKWISGEEARSLVHEMRHDYMAIMAGIGTVLADDPMLNVRLEGKKSPVRII 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGAR------RKFQKYLASRGVEVV----EFDIL 332
L +P ++ + + +V G + + + L GV ++ E +
Sbjct: 219 CDSMLRIPLDSQICQTAGRYRTIVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEI 278
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N + +M + G S+L E GGTL A+ SG++++V AF+APKI GG+ TPV G
Sbjct: 279 NLQLLMRKLGELGIDSVLIEGGGTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFG 338
Query: 393 MVEMSQALDLIDICYEQVGPDML 415
+ ++ A+ L + QVG D+L
Sbjct: 339 VEKVDDAIKLQLMRISQVGEDIL 361
>gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
13528]
gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
13528]
Length = 372
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 195/387 (50%), Gaps = 37/387 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A GF +P+P G +I + GK+ G+GY G AEV A+ G
Sbjct: 7 DEKYMKEALKLALLGKGFVNPNPLVGAVIVKN-GKIIGKGYHRFFGGAHAEVYALREAGD 65
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G A+V+AGI +VV+G +P + G+ V+ LR + ++
Sbjct: 66 NAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILRDENIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + + +N + S++PF + K +TLD G
Sbjct: 126 V----------VTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA SG + WI+ + SR +V +R R A++VG TV D+P LT R +P ++
Sbjct: 164 KIATVSGESKWITGEKSRLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEEKCKSPKAVI 223
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKY----LASRGVEVVEF-DILNSRDV 337
+ L +P E+ ++ S I++ KF K L + GV +V + R
Sbjct: 224 VDSKLRVPVESQIFKTSREREIIIA---CTEKFDKVKAESLKAMGVNIVVCTENKEGRVD 280
Query: 338 MEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
++Y + G S+L E G L SA+ SG+++KV F+APKI+GGKNA T V G+
Sbjct: 281 LKYLTKKLGEMGIDSVLVEGGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSVEGYGI 340
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
+S ++ L DIC E VG D++I ++
Sbjct: 341 GNLSDSIKLKDICAENVGEDIMIQAYV 367
>gi|310657724|ref|YP_003935445.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[[Clostridium] sticklandii]
gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[[Clostridium] sticklandii]
Length = 382
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 197/387 (50%), Gaps = 35/387 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++ A +A+K G+ +P+P G +I GKV GEGY A G AE++A+ +
Sbjct: 21 DEKFMKLALSLAEKGRGYVNPNPLVGAVIVKD-GKVIGEGYHTAFGKSHAEIEAINSATE 79
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP CH T A+++ + RVVV +P + G + L+ +
Sbjct: 80 DIKSATMYVTLEPC-CHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQSNI 138
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
++ V ++EE K + N IH T+ +PF++ KYAM+LD
Sbjct: 139 EITV-------GVLEEMAK---IQNEVFIHYMTTNLPFTILKYAMSLD------------ 176
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +G + WI+S+ SR V LR AVV G T+ D+ L R G P R
Sbjct: 177 GKIACHTGDSKWITSEKSRTDVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHR 236
Query: 281 IVLTQTLNLPEEANL--WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DV 337
IV+ + +A + D I VT+ + K +K L G +++ + + D+
Sbjct: 237 IVVDSAARISLDAKIINLDSKSDTYIAVTEAASDGKLRK-LEDYGAKIIMTKSKDGKVDL 295
Query: 338 MEYFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
E + + G+L SIL E G L+A+ + + L++K+ A++APKIIGG NA +P+ G
Sbjct: 296 EELWKELGFLGMDSILIEAGEQLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPIGGYGAS 355
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
MS+ ++L + + + D ++ G+++
Sbjct: 356 SMSEVINLKSMNFTHIENDFVVEGYIK 382
>gi|410727039|ref|ZP_11365262.1| riboflavin biosynthesis protein RibD [Clostridium sp. Maddingley
MBC34-26]
gi|410599374|gb|EKQ53927.1| riboflavin biosynthesis protein RibD [Clostridium sp. Maddingley
MBC34-26]
Length = 363
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 197/382 (51%), Gaps = 28/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A G +P+P G +I ++ GEGY G AE AV+
Sbjct: 2 DERYMERALELARLGIGKVNPNPLVGAVIVKDN-EIIGEGYHERYGEAHAERNAVKNATK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G V +++ +VV+G+ +P + + G+++ L+ G++
Sbjct: 61 SVEGSTIYVTLEPCAHYGKTPPCVDLIIEKKFRKVVIGMLDPNELVAGKSIDKLKQHGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + C +N + T+++PF V K M++D G
Sbjct: 121 VVVG----------VKEEECKKINEIFVKYITTKIPFVVLKSGMSID------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+SK SR+ +LR R +++VG NT+ D+P LT R RI++
Sbjct: 159 KIATYSGESKWITSKESREDSQNLRNRLHSIMVGVNTIIADDPELTCRINNEKKLTRIIV 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVME 339
L +P ++ + D TI+ T + ++ L ++G++++E N+ +++++
Sbjct: 219 DTNLRIPLDSKVITNEDKQTIIATSFDSDENKKQILRNQGIKIIEVSRKNNKVDLKELIK 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G SIL E GGTL SA ++ KV ++AP I+GG+N+ + ++ G ++S+A
Sbjct: 279 KIGHEGIDSILIEGGGTLNFSAFEEDIVDKVIFYIAPIILGGENSKSSIAGKGFSKLSEA 338
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
+ LI+ Y ++ D+++ G+++
Sbjct: 339 VKLINTSYRKIEEDLVLEGYIE 360
>gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae]
gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 410
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 36/417 (8%)
Query: 12 FPQNLKDQKGKKEMAPSLVANSAPVFC------KFSRAEDAAYIRRAADIADKSAGFTSP 65
F L+ + K A ++ + PV C F D Y+RRA +A + G+T+P
Sbjct: 10 FLSFLQALRSKDFKAFFIIRVNMPVMCFPLPSNSFKTMTDLDYMRRAIALAKQGLGWTNP 69
Query: 66 HPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT 125
+P GC+I + G++ EGY G AE AV GATAY+ +EP HG
Sbjct: 70 NPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKEDLSGATAYVTLEPCCHHGRTP 128
Query: 126 AVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCL 184
S L++ GI +V +G +P + G+ LR G++V ++ + EE C
Sbjct: 129 PCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV------VEGLLKEE----CD 178
Query: 185 LVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRV 244
+N H ++ P+ + KYAMT D GKIA SG + WI+ +++R RV
Sbjct: 179 ALNPIFFHYIQTKRPYVLMKYAMTAD------------GKIATGSGESKWITGESARARV 226
Query: 245 FDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPT 303
R + A++VG +TV DNP L +R P+RIV L P + L + + T
Sbjct: 227 QQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVCDSQLRTPLDCQLVQTAKEYRT 286
Query: 304 IVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFHDRGYLSILWECGGTLAA 359
++ T +K +++ GV+V+ N R D+++ + S+L E G +L
Sbjct: 287 VIATVSDDLQKIEQF-RPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSLNF 345
Query: 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
SA+ SG++++V ++APK++GGK A TP+ G+ ++ QA+ L E +G D+L+
Sbjct: 346 SALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 402
>gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
DSM 684]
gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
DSM 684]
Length = 364
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 132/376 (35%), Positives = 189/376 (50%), Gaps = 32/376 (8%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A D+A K+ G T+P+P G +I G+V G G+ G AEV A+ RGA A
Sbjct: 4 ALDLARKALGRTTPNPPVGAVIVRD-GQVVGRGFHPKAGEPHAEVFALRDAADQARGADA 62
Query: 112 YLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP HG AL+ AG++RV VG+ +P + GQ V LR+ G++V V
Sbjct: 63 YVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEV---- 118
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
++E C + AP I S P + K A+TLD G+ A +G
Sbjct: 119 ---GVLE---TQCRRLIAPFIKHMISGRPLFILKSALTLD------------GRTATRTG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQTLNL 289
H+ WI+S SR+ V LR + DA++VG T RDNPRLT R GH P+RIV+ L L
Sbjct: 161 HSQWITSARSREHVHRLRDQVDAIMVGSGTALRDNPRLTTRLTPPGHDPIRIVVDSRLQL 220
Query: 290 PEEANLWD-VSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEFDILNSRDV-----MEYFH 342
PE ++L + S +PT VVT A K + GVEV+ ++ V +
Sbjct: 221 PETSHLINHQSASPTWVVTVAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
R S+L E G L S S+GLI +V ++APK++GG + + G+ + AL L
Sbjct: 281 QRDIQSVLVEGGSVLNQSLFSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQL 340
Query: 403 IDICYEQVGPDMLISG 418
D +G D+L+ G
Sbjct: 341 RDFRVTCLGDDVLLEG 356
>gi|427407049|ref|ZP_18897254.1| riboflavin biosynthesis protein RibD [Selenomonas sp. F0473]
gi|425707524|gb|EKU70568.1| riboflavin biosynthesis protein RibD [Selenomonas sp. F0473]
Length = 370
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 190/387 (49%), Gaps = 36/387 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R D +Y+R A +A+ + G TSP+P G +I G + G G+ A G AE+ A+
Sbjct: 5 RPLDESYMREALRLAEYARGRTSPNPLVGAVI-VRDGIIVGSGWHRAAGEPHAEIHALRM 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G RGAT Y+ +EP CH T A++ AGI RVV + +P + G + LR+
Sbjct: 64 AGDLARGATLYVTLEPC-CHYGRTGPCAEAVIAAGIARVVTALGDPNPAVAGHGIERLRA 122
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+ V E+AR+ N + ++ PF K AMTLD
Sbjct: 123 AGIAV------ATGICAEKARRQ----NEVFLKWVVTKRPFVTLKTAMTLD--------- 163
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
GK A+ +G + WI+ + +R RV + R D ++VG TV D+P LT R H G
Sbjct: 164 ---GKTASRTGASHWITGEAARTRVHEWRDAYDVILVGIGTVLADDPSLTVRLPHRTGKN 220
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-----DIL 332
P+R+VL P +A L A TIVV A K L + G EVV F DI
Sbjct: 221 PVRVVLDSMARTPHDAKLLTDGAARTIVVAGERADPKRTALLQACGAEVVTFGRERPDIA 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++++ + S+ E G + S +S+GL K+ F+AP ++GG +APT V G
Sbjct: 281 A---LLDFLGAQELTSVFVEGGAAVHWSFLSAGLADKMHVFIAPMLMGGADAPTAVGGAG 337
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGF 419
AL L+D+ E+VG D+L++G+
Sbjct: 338 FDGPQSALGLLDMTVERVGADILVTGY 364
>gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
5427]
gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
5427]
Length = 363
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 196/380 (51%), Gaps = 31/380 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A ++A + G SP+P G ++ G++ GEGY G AEV A+++
Sbjct: 5 YMRYALNLAKQGGGKVSPNPLVGAVL-VKEGRIIGEGYHEVYGANHAEVNAIKSASQKSE 63
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP + +G ++Q I RVVVG+R+P + G ++ L G++V V
Sbjct: 64 GATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIEVIV 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+EE C +N I T + PF + K AMTLD GKIA
Sbjct: 124 -------GILEE---ECRKLNEIFIKYITKQEPFVLLKAAMTLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + SR+ V LR ++VG TV +D+P LT R G P+ IV+ T
Sbjct: 162 TVAGQSKWITGEASREMVHQLRNAYSGILVGIGTVIKDDPLLTCRLVSGRNPVIIVVDST 221
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKY--LASRGVEVVEFDI----LNSRDVMEY 340
L +P + + + I + K L GV+V+ + +N +++M
Sbjct: 222 LRIPMSSKIIGGTSKVIIAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQ 281
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
G SIL E G + ASA+ +G++ KV ++AP+I+GG+ A TPV+ G+ ++ +++
Sbjct: 282 LGKLGIDSILIEGGAEVNASALEAGIVDKVQFYIAPQIVGGQ-AKTPVAGRGIADLEESI 340
Query: 401 DLIDICYEQVGPDMLISGFL 420
+ ++ +++G D+L+ G++
Sbjct: 341 KVENLQIKRIGEDILLEGYI 360
>gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 379
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 198/394 (50%), Gaps = 36/394 (9%)
Query: 35 PVFC------KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA 88
PV C F D Y+RRA +A + G+T+P+P GC+I + G++ EGY
Sbjct: 2 PVMCFPLPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEK 60
Query: 89 QGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQ 147
G AE AV GATAY+ +EP HG S L++ GI +V +G +P
Sbjct: 61 IGGWHAERNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNP 120
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
+ G+ LR G++V ++ + EE C +N H ++ P+ + KYAM
Sbjct: 121 LVAGRGANQLRQAGVEV------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAM 170
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
T D GKIA SG + WI+ +++R RV R + A++VG +TV DNP
Sbjct: 171 TAD------------GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPM 218
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEV 326
L +R P+RIV L P + L + + T++ T +K +++ GVEV
Sbjct: 219 LNSRMPNAKQPVRIVCDSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEV 277
Query: 327 VEFDILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
+ N R D+++ + S+L E G +L SA+ SG++++V ++APK++GGK
Sbjct: 278 LVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGK 337
Query: 383 NAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
A TP+ G+ ++ QA+ L E +G D+L+
Sbjct: 338 QAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 371
>gi|387929359|ref|ZP_10132036.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus PB1]
gi|387586177|gb|EIJ78501.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus PB1]
Length = 371
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 190/379 (50%), Gaps = 29/379 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A +A + G TSP+P+ G ++ + G++ G G GT AEV A+ G
Sbjct: 2 QDYEYMKLALSMARAAVGQTSPNPSVGAVVVKN-GEILGMGAHLKAGTPHAEVHAIRTAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGA Y+ +EP +G + L+ AGI RVVV +P + G ++ LR G+
Sbjct: 61 ENARGADLYVTLEPCSHYGKTPPCTELIISAGIKRVVVATLDPNPLVAGSGIKQLRQAGI 120
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V V +G+ EEA +N P H + PF K A+TLD
Sbjct: 121 EVEVGVGK-------EEADN----INEPFFHYIQTGKPFVTLKAAVTLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMR 280
GK AA +G + WI+S +R V LR DA++VG TV +DNP LT R GG P+R
Sbjct: 159 -GKTAAKTGDSKWITSTQARSDVHQLRHEHDAILVGIQTVLKDNPLLTTRLPRGGKNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
I+L L +P +AN+ A TI++T ++ L G EVV ++ +++
Sbjct: 218 IILDTHLRIPLDANVIKDKTAKTIIITGNELDQQKAGKLQELGAEVVPLSTGRIDINELL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
R +S+L E G + AS + +G +V +VAPKIIGG +A + G+ +
Sbjct: 278 TVLGKRRIMSVLVEGGSKVHASFMKTGAYQQVIFYVAPKIIGGMDAIPAIGGEGLDFVRD 337
Query: 399 ALDLIDICYEQVGPDMLIS 417
A L E++GPD+ I+
Sbjct: 338 AEKLEFTSVERIGPDLKIT 356
>gi|384457317|ref|YP_005669737.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum EA
2018]
gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum EA
2018]
Length = 365
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 195/385 (50%), Gaps = 31/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ A+++RA +IA+K +G+ +P+P G +I K+ GEGY G AEV A+ G
Sbjct: 2 NEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDN-KIVGEGYHEKFGGNHAEVNALNMAGK 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+ Y+ +EP +G + A+V+AGI RV++ + +P + + ++ L+ G++
Sbjct: 61 DAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I +K +N I T++ PF K A TLD G
Sbjct: 121 V----------ITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH--TPMRI 281
KI SG + WIS +TSR V LR + +++VG T DNP LT R G + +P+ I
Sbjct: 159 KICTVSGESRWISGQTSRKYVHHLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAI 218
Query: 282 VLTQTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
++ L +P++ +++ + + I+ T A + + L + GV +++ N R ++Y
Sbjct: 219 IVDSKLRVPKDLRIFNTLQERKIIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDY 278
Query: 341 FHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
D G S+L E G L S I I K+ F+AP I+GG+ A V G+ ++
Sbjct: 279 LLDELGKIGIDSVLLEGGSELNFSFIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKL 338
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
++ + D+ E++G D+L+SG+L
Sbjct: 339 KDSIKIYDMDSEKIGEDILVSGYLN 363
>gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 379
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 198/394 (50%), Gaps = 36/394 (9%)
Query: 35 PVFC------KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA 88
PV C F D Y+RRA +A + G+T+P+P GC+I + G++ EGY
Sbjct: 2 PVMCFPLPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEK 60
Query: 89 QGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQ 147
G AE AV GATAY+ +EP HG S L++ GI +V +G +P
Sbjct: 61 IGGWHAERNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNP 120
Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
+ G+ LR G++V ++ + EE C +N H ++ P+ + KYAM
Sbjct: 121 LVAGRGANQLRQAGVEV------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAM 170
Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
T D GKIA SG + WI+ +++R RV R + A++VG +TV DNP
Sbjct: 171 TAD------------GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPM 218
Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEV 326
L +R P+RIV L P + L + + T++ T +K +++ GV+V
Sbjct: 219 LNSRMPNAKQPVRIVCDSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQF-RPLGVDV 277
Query: 327 VEFDILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
+ N R D+++ + S+L E G +L SA+ SG++++V ++APK++GGK
Sbjct: 278 LVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGK 337
Query: 383 NAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
A TP+ G+ ++ QA+ L E +G D+L+
Sbjct: 338 QAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 371
>gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DCB-2]
gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DCB-2]
Length = 365
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 197/364 (54%), Gaps = 30/364 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G TSP+P GC+I G + GEGY GT AEV A++A G
Sbjct: 4 DNHYMSRALELAALAMGRTSPNPLVGCVI-VKDGAIVGEGYHQKAGTPHAEVHALQAAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP G + AL++AGI RVVV + +P + GQ + LR+ G+Q
Sbjct: 63 HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGIQ 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V L+ K EAR +N + + +PF ++K A+TLD G
Sbjct: 123 VDV---GLKEK---EART----LNKGFLKAMQTGLPFVLYKSALTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + W++++ SR V LR D ++VG TVR+DNP L R G P+R+++
Sbjct: 161 KIATESGDSKWVTNEASRAYVHRLRDHFDVIMVGSETVRQDNPALNCRIDEGRDPVRLIV 220
Query: 284 TQTLNLP-EEANLWDVSDAPTIVVTQRGA-RRKFQKYLASRGVEVVEFD---ILNSRDVM 338
TL +P + A L AP ++ T A K + A VEV ++D + +D++
Sbjct: 221 DGTLQIPLQAAVLASSCTAPCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLL 280
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
RG+ S+L E GG LA S + LI +V APK+IGGK P+P++ L + M+Q
Sbjct: 281 GDLVKRGWNSVLLEGGGGLAGSLLREQLIDEVEFIYAPKLIGGKG-PSPLTGLELPLMAQ 339
Query: 399 ALDL 402
A+ L
Sbjct: 340 AIPL 343
>gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris MG1363]
gi|389854698|ref|YP_006356942.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris NZ9000]
gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp.
cremoris NZ9000]
gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 362
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 197/384 (51%), Gaps = 34/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ A +A K G +P+P G +I + G++ G+GY G AE+ A ++
Sbjct: 4 DEHFMNLAILLARKGGGNVNPNPQVGAII-VNDGRIIGQGYHEKYGEAHAEINAFKSCIE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP G A+++ + RVV+G +P + G+ + A++ G+
Sbjct: 63 SPEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGI- 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ K++E K C +N H T R P+ + KYAMTLD G
Sbjct: 122 ------DVSLKVLE---KECKDLNKIFFHYVTQRTPYVMMKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA G + WI+ + +R +V + R R A+++G T+ +D+P+LTAR G P+RI+
Sbjct: 161 KIATYKGQSKWITGEKARQKVHEDRSRFMAIMIGVETLLKDDPQLTARIKNGINPIRIIC 220
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
L P + + + + PTI+ T +K Q ++ + G E++ L+ +D++
Sbjct: 221 DTQLRTPLTSKIVSTAFEIPTIIATSNENIQKHQAFIEA-GCEILLVSSISKHLDLKDLI 279
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+R S++ E G L ASA+ +G++ KV A++APKI GGK AP+ V LG+ Q
Sbjct: 280 TKLGEREIDSLILEGGARLNASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQ 339
Query: 399 A--LDLIDICYEQVGPDMLISGFL 420
A LD + Y +G D+L+ L
Sbjct: 340 AYLLDRPQVAY--LGEDILLESEL 361
>gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
Il1403]
gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
Il1403]
Length = 362
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 195/383 (50%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A +A+K G +P+P G LI G++ G+GY G AE+ A +
Sbjct: 3 KDEYYMDLAIVLANKGGGNVNPNPQVGALIVKE-GRIIGQGYHEKYGKAHAEINAFKDCN 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP G A+++ GI RVV+G +P + G+ ++A+R G+
Sbjct: 62 ESPEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + ++E K C +N + + +P+ + KY MTLD
Sbjct: 122 EVSL-------NVLE---KECEELNKIFFYYVSQGLPYVMMKYVMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S+G + WI+ + +R +V R R A+++G T+ D+P+L+ R G P+RI+
Sbjct: 160 GKIATSAGQSKWITGEIARQKVHQDRSRFMAIMIGVETLILDDPQLSVRLENGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL----NSRDV 337
L P + + ++ PTI+ T K +L + G E++ L N +++
Sbjct: 220 CDTHLRSPLASKIVSTATEIPTIIATAESDPEKQAPFLKA-GCEIILVSCLEGRLNLKEL 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++G SI+ E GGTL ASA+ +G++ KV ++A KI GGK AP+PV G+ + +
Sbjct: 279 TKKLGEKGIDSIILEGGGTLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPN 338
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
QA L +G D+L+ L
Sbjct: 339 QAYLLEGAQITYLGEDILLESEL 361
>gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense Y51]
gi|423073999|ref|ZP_17062734.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DP7]
gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense Y51]
gi|361855148|gb|EHL07145.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DP7]
Length = 372
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 197/364 (54%), Gaps = 30/364 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G TSP+P GC+I G + GEGY GT AEV A++A G
Sbjct: 11 DNHYMSRALELAALAMGRTSPNPLVGCVI-VKDGVIVGEGYHQKAGTPHAEVHALQAAGE 69
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP G + AL++AGI RVVV + +P + GQ + LR+ G+Q
Sbjct: 70 HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGIQ 129
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V L+ K EAR +N + + +PF ++K A+TLD G
Sbjct: 130 VDV---GLKEK---EART----LNKGFLKAMQTGLPFVLYKSALTLD------------G 167
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + W+S++ SR V LR D ++VG TVR+DNP L R G P+R+++
Sbjct: 168 KIATESGDSKWVSNEASRAYVHRLRDHFDVIMVGSETVRQDNPALNCRIDEGRDPVRLLV 227
Query: 284 TQTLNLP-EEANLWDVSDAPTIVVTQRGA-RRKFQKYLASRGVEVVEFD---ILNSRDVM 338
L +P + A L AP ++ T A K + A VEV ++D + +D++
Sbjct: 228 DGALQIPLQAAVLASSCTAPCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLL 287
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
RG+ S+L E GG LA S + + LI +V APK+IGGK P+P+S L + M+Q
Sbjct: 288 GDLVKRGWNSVLLEGGGGLAGSLLRAQLIDEVEFIYAPKLIGGK-GPSPLSGLELPLMAQ 346
Query: 399 ALDL 402
A+ L
Sbjct: 347 AIPL 350
>gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
Length = 374
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 203/383 (53%), Gaps = 31/383 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A+ +R A A K G T+P+P GC+I G+V G+G+ GT AEV A+ A
Sbjct: 3 ADHLKMMRLALSEARKGVGKTAPNPAVGCVI-VRDGEVVGKGWHKKAGTPHAEVHALRAA 61
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G GA AY+ +EP G + AL++A + RV V + +P + G+ ++ L+ G
Sbjct: 62 GELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDAG 121
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V L+++ +E +N P + ++ P+ V K A+TLD
Sbjct: 122 IEVEV--GLLEAESLE--------INRPFVKWILTKRPYVVLKSALTLD----------- 160
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK A ++G + W++ SR V LRGR DA++VG TV +D+P LT R GG P+R+
Sbjct: 161 -GKSATATGDSKWVTCDRSRREVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPGGKDPLRV 219
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----D 336
++ TL +P A L+ + S+A T++ T + +A+ GVEV+ + + R D
Sbjct: 220 IVDSTLRIPRHAALFSLRSEAKTVIATCCADLARID-AVAAHGVEVLVCNEKDGRVDPDD 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ +RG SIL E G LA + + +GLI + F+APK++GG + G+ M
Sbjct: 279 LLTKLGERGVQSILLEGGSHLAGAFLRAGLIDRCMLFLAPKLVGGAGMGL-FAGAGVNLM 337
Query: 397 SQALDLIDICYEQVGPDMLISGF 419
+ A+ L ++ +++G D+L+ G
Sbjct: 338 ADAIRLEEMKVKRIGVDLLVEGV 360
>gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
Length = 377
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 203/382 (53%), Gaps = 31/382 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++++A +++ G+T P+P G +I K+ G+GY G AEV A++
Sbjct: 10 FMKKAIELSKLGVGYTYPNPLVGAVIVKDN-KIIGQGYHERFGGAHAEVNALKNATEDVT 68
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + +V++GI V+VG+R+P + + G+ + L+ G++V V
Sbjct: 69 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE K +N I T++ PF + K AMTLD GKIA
Sbjct: 129 -------GVFEEEIKK---INEIFIKYITTKEPFCILKTAMTLD------------GKIA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
G + WIS++ SR+ V ++R R ++VG TV +D+P LT R G RI++
Sbjct: 167 TVMGDSKWISNELSREYVHEIRHRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVD 226
Query: 285 QTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFH 342
+P + + ++ S TI+ T + A + + + +G EV+ I N + D+
Sbjct: 227 SKGRIPLNSKVLNLDSKEKTIIATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVI 286
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G + SIL E GGTL SA++ G++ KV +F+APKIIGG++A T V+ G+ ++S A
Sbjct: 287 ELGKMNIDSILLEGGGTLNYSALNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDA 346
Query: 400 LDLIDICYEQVGPDMLISGFLQ 421
+ L DI D++I G+++
Sbjct: 347 VTLHDIEISNFQEDVVIEGYVK 368
>gi|337285949|ref|YP_004625422.1| riboflavin biosynthesis protein RibD [Thermodesulfatator indicus
DSM 15286]
gi|335358777|gb|AEH44458.1| riboflavin biosynthesis protein RibD [Thermodesulfatator indicus
DSM 15286]
Length = 369
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 194/385 (50%), Gaps = 30/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A K G TSP+P G ++ G++ G+GY GT AEV A+ G
Sbjct: 4 DIYFMRIALKEGRKGLGRTSPNPPVGAVV-VKDGQIVGKGYHRLAGTPHAEVHALREAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP + +G + A+++AGI RVV+G R+P +G A LR GL+
Sbjct: 63 KARGATIYVTLEPCNHYGKTPPCTQAILKAGIKRVVIGARDPNPKAQGGA-DFLRVNGLE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + EE + C + R P+ + K AM+LD G
Sbjct: 122 VTT------GILAEECAELCRF----FLKTVKERRPWIIAKAAMSLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+IA +G + WI+ + +R LR DA++VG NTV +D+P LT R GG P+RI+L
Sbjct: 160 RIATRTGDSKWITGEKARRFGHRLRHICDAILVGKNTVLKDDPLLTCRLKGGKNPVRIIL 219
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
L+LP + ++ +A T+V A R +K L GV V + NS+ ++
Sbjct: 220 DSKLSLPLDRQVFLNKEAQTVVACNNEAPRNKEKELKKLGVIVWRLPVENSQVDLKALLK 279
Query: 344 RGY----LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
R + LSIL E G + S GL+ ++ F P IIGGK++P + G ++QA
Sbjct: 280 RAFNQDILSILVEGGAEVHGSFFDQGLVDEIAFFYGPVIIGGKSSPCAIGGDGPALLAQA 339
Query: 400 LDLIDICYEQVGPDMLISGFL-QPI 423
L ++++G +L+ G+L +PI
Sbjct: 340 SRLSKFSFKRLGDSLLVRGYLTEPI 364
>gi|406980949|gb|EKE02491.1| hypothetical protein ACD_20C00379G0008 [uncultured bacterium]
Length = 360
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 185/382 (48%), Gaps = 31/382 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ D+A G+ SP+P G ++ +V G GY G AEV A+ G
Sbjct: 5 QDKKYMQHCIDLAKLGEGYVSPNPLVGAVVLDKNAQVVGTGYHKKYGEAHAEVNALNDAG 64
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+G T Y+N+EP G V+ ++++GI R+V+G+ +P + G+ +R + G+
Sbjct: 65 ELAKGGTLYINLEPCSHFGKTPPCVNKVIESGIKRLVIGMVDPNPLVAGEGIRRAKEAGI 124
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + I+E K C +N I T + PF K A T+D
Sbjct: 125 EVTI-------GILE---KECKKLNEIFIKHVTQKQPFIAIKTASTID------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+S +R V LR + DA++ G TV DNP LT R GG P+RI+
Sbjct: 163 GKIATKTGSSKWITSDLARLEVQGLRKKYDAILTGSGTVIADNPSLTCRIPGGRNPVRII 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+ L ++ ++ I+ T K VE+++ ++N + + Y
Sbjct: 223 IDSELKTSSDSKVYHDDGTRVIIATSENINNK----TYPDNVEILKCPLVNDKIDLHYLV 278
Query: 343 DRGY----LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ Y SIL E GG L + I + L+ K + F+APKI+G A + + + ++++
Sbjct: 279 NKLYEDQIASILIEAGGVLNGAFIKNSLVDKFYFFIAPKILGDNQAKSIIEGFDITDINE 338
Query: 399 ALDLIDICYEQVGPDMLISGFL 420
+L + + PD++I G+
Sbjct: 339 TPNLRFDEIKSLPPDIMIEGYF 360
>gi|407692605|ref|YP_006817394.1| riboflavin biosynthesis protein [Actinobacillus suis H91-0380]
gi|407388662|gb|AFU19155.1| riboflavin biosynthesis protein [Actinobacillus suis H91-0380]
Length = 361
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 196/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC++ + G++ EGY G AE A+
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVVVKN-GEIVAEGYHEKIGGWHAERNAILHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ S GVEV+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKIEQF-RSLGVEVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ D S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGDMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|384108508|ref|ZP_10009401.1| riboflavin biosynthesis protein RibD [Treponema sp. JC4]
gi|383869895|gb|EID85501.1| riboflavin biosynthesis protein RibD [Treponema sp. JC4]
Length = 372
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 41/391 (10%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE-- 100
AE+ Y+RRA ++A K +G+T+P+P G +I GK+ GEG+ + G AE +A++
Sbjct: 2 AENETYMRRAIELAWKGSGWTNPNPLVGAVI-VKDGKIIGEGFHHKYGELHAEREALKDC 60
Query: 101 -AGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
A G+ GA ++ +EP CH AL + GI RV VG R+P + GQ L
Sbjct: 61 LARGNDPAGAEIFVTLEPC-CHFGKQPPCCQALAEVGIKRVFVGSRDPNPLVHGQGNSFL 119
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R +G++V I + R+ C +N H T++ P+ KYAMT D
Sbjct: 120 REKGIEV----------IEDFLRQECDALNPIFFHYITTKRPYVALKYAMTAD------- 162
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +G + WI+ + +R V LR R A++ G TV DNP L R GG+
Sbjct: 163 -----GKIATKTGASKWITGEAARAYVHQLRNRYAAILCGIGTVLADNPMLNCRMTGGNN 217
Query: 278 PMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRK---FQKY--LASRGVEVVEFDI 331
P+R++ L +P + L + + PTIV G QK L + G+E+++ +
Sbjct: 218 PLRVICDSKLRIPLDCQLVKTAKEIPTIVACAEGLEASEGVAQKISALKTAGLEILQLPL 277
Query: 332 LN--SRDVMEYFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP- 385
+ S D+ G L S+L E GG + SA+ +G+++K++AF+APK+ GG +A
Sbjct: 278 TSEGSLDLTALMQILGQLKIDSVLIEGGGEINYSALKAGIVNKIYAFIAPKLFGGGSAAK 337
Query: 386 TPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+PVS G+ + +A Q D+LI
Sbjct: 338 SPVSGEGIAAVEEAFLFKLTKIRQFEEDLLI 368
>gi|333370642|ref|ZP_08462633.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437]
gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437]
Length = 368
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 189/381 (49%), Gaps = 28/381 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED ++ A +A+ + G TSP+P G ++ G++ G G GT AEV A+E G
Sbjct: 7 EDERWMELALRLAEAARGQTSPNPLVGAVVVKD-GQLLGSGAHLKAGTPHAEVHALEQAG 65
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+G+T Y+ +EP + +G + + +G+ RVVVG +P + G+ V+ LR GL
Sbjct: 66 KSAKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRLREAGL 125
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ++ ++ + C +N H + PF K A+TLD
Sbjct: 126 SV-------KTGVLAD---RCTRLNEAYFHHRRTGFPFVTLKAAVTLD------------ 163
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GK A S G + W++ + +R+ V LR + DAV+VG T D P+LT R GGG P+R+
Sbjct: 164 GKTATSDGDSRWVTGEAAREEVHRLRHQYDAVLVGSGTALHDRPQLTVRLPGGGKNPLRV 223
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVM 338
V+ L +P + L DV A T V A + L +RGV V + V
Sbjct: 224 VVDSRLRMPLNSPLADVESASTWVFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVF 283
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
G +S+L E GG L AS + G ++KV F+APKI+GG+++ T V + +M
Sbjct: 284 RRLGREGIVSVLTESGGELNASLLREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQMKD 343
Query: 399 ALDLIDICYEQVGPDMLISGF 419
AL L D+ + G D+ ++G
Sbjct: 344 ALLLEDVSVDLFGRDICVTGI 364
>gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125]
gi|10174171|dbj|BAB05273.1| riboflavin specific
deaminase(diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase) [Bacillus halodurans C-125]
Length = 368
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 188/374 (50%), Gaps = 25/374 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A+ + G TSP+P G ++ G++ G G G AEV A+ G
Sbjct: 3 DEQYMKLALALAESARGQTSPNPLVGAVVVKD-GQIVGMGAHLKAGEPHAEVHAIRMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP +G L++AG+ RVV+ +P + G+ +R L+ G++
Sbjct: 62 KAKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ L +N H ++ P+ K A TLD G
Sbjct: 122 VEV----------GICKQEALDLNRIFFHFVRTKRPYVTIKSATTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
K A G++ WI+S+ +R+ V R DA++VG TV DNP LT R GG P+R++
Sbjct: 160 KTATVQGNSKWITSEQAREDVHRYRHEHDAILVGVGTVLADNPSLTTRLAAGGLNPVRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L + L P + N+ APT + T+ A + +K L +GV+V ++ V+E
Sbjct: 220 LDRRLRTPLDRNVITDGKAPTWIFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLR 279
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
++ LS+ E G T+ S + +G + +V ++APK+ GG APT + G++ ++ AL
Sbjct: 280 EKNILSVFVEGGATVNGSFVKAGTVDQVITYLAPKVFGGAAAPTAIGGDGVIAVADALPF 339
Query: 403 IDICYEQVGPDMLI 416
Q+GPD+ I
Sbjct: 340 EVQEVIQIGPDVKI 353
>gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
C3-41]
gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
C3-41]
Length = 375
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 195/383 (50%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A D+A + G T+P+P G +I + + G G G AEV A G
Sbjct: 9 KDEKYMQLALDLAASAKGNTNPNPLVGAVIVKND-IIVGTGLHRKAGEPHAEVHAFRMAG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALVQ-AGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP G + LV+ +G++RVVV +++P + G+ ++ LR G+
Sbjct: 68 EHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRDAGI 127
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + ++AR+ +N IH ++ PF + K+AMT+D
Sbjct: 128 TVEV------GVLEQQARR----LNERFIHNMLTKRPFIISKFAMTVD------------ 165
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +GH+ W++ K +R+ V +R D ++VG TV DNP LT R G G P R
Sbjct: 166 GKIATHTGHSKWVTGKAAREDVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRD 336
I++ L P +AN+ + +APTI+V ++ L ++G+ V+ + LN +
Sbjct: 226 IIMDSLLRTPLDANVLNTEEAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDE 285
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ ++ G IL E G + AS + G I K ++APK++GG + TP + M
Sbjct: 286 MLARLYEHGITDILLEGGSKVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLM 345
Query: 397 SQALDLIDICYEQVGPDMLISGF 419
++A + ++++G D+ I +
Sbjct: 346 NEAWQVEFASFDKIGEDLCIIAY 368
>gi|429761344|ref|ZP_19293770.1| riboflavin biosynthesis protein RibD [Anaerostipes hadrus DSM 3319]
gi|429183839|gb|EKY24877.1| riboflavin biosynthesis protein RibD [Anaerostipes hadrus DSM 3319]
Length = 361
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 194/377 (51%), Gaps = 32/377 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A K G+T+P+P G +I +V GEGY G AE A++ G
Sbjct: 1 MRRAIELAKKGCGYTNPNPLVGAVIVKDQ-RVIGEGYHEKIGGLHAERNALKNCIEDPEG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP CH T AL++AGI +V VG +P + G ++ L G++
Sbjct: 60 AEIYVTLEPC-CHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIET-- 116
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ I+EE C +N H + +P++ KYAMTLD GKIA
Sbjct: 117 -----ETGILEE---ECRQLNDIFFHYIQNDIPYTALKYAMTLD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
++G + WI+ + +R LR + A++ G TV D+P L AR G+ P+R++
Sbjct: 157 TATGESKWITGEEARRHAHTLRHQYAAIMAGIGTVLADDPMLNARIEHGNDPIRVICDSN 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEYF 341
L + E +N+ + + PTI+ T + K K L +G ++++ +N ++V++
Sbjct: 217 LRISEGSNIVKTAREIPTIIATISEDQEKIAK-LEQKGCKILKTSEQDGKVNVKEVLKQL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S+L E GG L S I + +HKV+A++APK+ GG+ A TPV G+ + +AL
Sbjct: 276 RNMEIDSVLVEGGGILNESLIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALV 335
Query: 402 LIDICYEQVGPDMLISG 418
++ +G D+L+ G
Sbjct: 336 FDELKATPLGNDILLEG 352
>gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
DSM 20745]
gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
DSM 20745]
Length = 387
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 195/402 (48%), Gaps = 36/402 (8%)
Query: 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQ 97
C+ A D ++RRA D+A + G +P+P G ++ G++ GEG AE+
Sbjct: 6 CRVVPATDLHWMRRALDLAASARGRVAPNPAVGAVL-VRDGRLVGEGATEPPPGAHAEIV 64
Query: 98 AVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRA 156
A+ G+ RGAT Y+ +EP +G V AL+ AGI R VV +R+P + G+ +R
Sbjct: 65 ALRQAGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRL 124
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L G++V + + I NA + R +P K+A++LD
Sbjct: 125 LAEAGVRVELGLAAGAAAAI----------NAGFLKRVHCGLPEVTAKFAVSLD------ 168
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----- 271
GKIA +GHA WI+ +R LR DA++VG T+ D+P LT R
Sbjct: 169 ------GKIATHTGHARWITGAEARREGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPED 222
Query: 272 --HGGGHTPMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
GG H P+R+V+ +Q P A L T++ T A + L + G +VV
Sbjct: 223 CGAGGPHHPLRVVVDSQARTPPGAAMLQPHMPGRTLLATTSSAPPERIAALRAVGADVVT 282
Query: 329 FDILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
R ++ RG S+L E GGTL + +GLI + AF+AP ++GG++A
Sbjct: 283 LPDHGGRVDLHALLRCLAARGVNSVLVEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDA 342
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDL 426
P P+ G+ M A L ++ QVG D+++ G +QPIP L
Sbjct: 343 PGPLGGEGVATMDAACRLREVEVCQVGSDLMVQGRVQPIPGL 384
>gi|414074210|ref|YP_006999427.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413974130|gb|AFW91594.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 362
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 197/384 (51%), Gaps = 34/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ A +A K G +P+P G +I G++ G+GY G AE+ A ++
Sbjct: 4 DEHFMNLAILLARKGGGNVNPNPQVGAIIVND-GQIIGQGYHEKYGEAHAEINAFKSCIE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP G A+++ + RVV+G +P + G+ + A++ G+
Sbjct: 63 SPEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGI- 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ K++E K C +N H T R P+ + KYAMTLD G
Sbjct: 122 ------DVSLKVLE---KECKDLNKIFFHYVTQRTPYVMMKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA G + WI+ + +R +V + R R A+++G T+ +D+P+LTAR G P+RI+
Sbjct: 161 KIATYKGQSKWITGEKARQKVHEDRSRFMAIMIGVETLLKDDPQLTARIKNGINPIRIIC 220
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVM 338
L P + + + + PTI+ T +K Q ++ + G E++ + L+ +D++
Sbjct: 221 DTQLRTPLTSKIVSTAFEIPTIIATSNENIQKHQAFIEA-GCEILLVSSISEHLDLKDLI 279
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+R S++ E G L ASA+ +G++ KV A++APKI GK AP+PV G+ +Q
Sbjct: 280 TKLGEREIDSLILEGGARLNASALKAGIVQKVQAYIAPKIFCGKEAPSPVEGQGVEHPNQ 339
Query: 399 A--LDLIDICYEQVGPDMLISGFL 420
A LD + Y +G D+L+ L
Sbjct: 340 AYLLDRPKVVY--LGEDILLESEL 361
>gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Faecalibacterium prausnitzii L2-6]
Length = 374
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 30/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G+TSP+P G ++A G++ G+G+ G AE A+ +
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKE-GRIIGQGWHQRYGQAHAERNALASCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G V A++ AGI RVVVG +P + G+ + LR+ G+
Sbjct: 62 DPQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGI- 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ +++E C +N H T++ PF KYAMT+D G
Sbjct: 121 ------DVTENVLQE---ECDALNKVFFHYITTKRPFVSMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R+ V R R ++VG T+ D+P LT R GG P+RI+
Sbjct: 160 KIATYTGASKWITGEIARNHVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRDPVRIIC 219
Query: 284 TQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
L P ++ + PTI+ T G K Y G V+ + +N +M
Sbjct: 220 DTHLRTPLQSQVVMTAKQVPTILATCCGDPEKQAAY-QQDGCRVLCLEAHCGHVNLLQLM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E SIL E GGTL SA+ SG++ +V A++APK+ GG++A P+ G+
Sbjct: 279 EQLGQEQIDSILLEGGGTLNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDA 338
Query: 399 ALDLIDICYEQVGPDMLIS 417
A L + EQ+G D LI
Sbjct: 339 AFRLKNSRLEQLGKDFLIE 357
>gi|410657202|ref|YP_006909573.1| riboflavin biosynthesis protein RibD [Dehalobacter sp. DCA]
gi|410660237|ref|YP_006912608.1| riboflavin biosynthesis protein RibD [Dehalobacter sp. CF]
gi|409019557|gb|AFV01588.1| riboflavin biosynthesis protein RibD [Dehalobacter sp. DCA]
gi|409022593|gb|AFV04623.1| riboflavin biosynthesis protein RibD [Dehalobacter sp. CF]
Length = 381
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 205/388 (52%), Gaps = 39/388 (10%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
AED Y+ RA ++A +AG TSP+P GC+I G++ GEG GT AEV A+ A
Sbjct: 7 AEDKNYMERALNLALLAAGRTSPNPLVGCVIVRD-GQIVGEGCHRKAGTPHAEVHALNAA 65
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
GS GA Y+ +EP +G AL+ AG+ +V+V + +P + GQ V+ L+ G
Sbjct: 66 GSSAEGADVYVTLEPCSHYGRTPPCTDALIAAGVKKVIVAMTDPNPLVSGQGVKKLQDAG 125
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V + E+ARK +N P + +++PF ++K AMTLD
Sbjct: 126 ILVET------GLLAEKARK----INEPFLKAIITKMPFVLYKAAMTLD----------- 164
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMR 280
G+ A SG + WI+S+ +R V LR D ++VG TV +DNP LT R+ G P+R
Sbjct: 165 -GRTAVESGDSKWITSEEARHFVHGLRNTFDVIMVGSQTVLQDNPLLTCRNIENGRDPVR 223
Query: 281 IVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARR----KFQKYLASRGVEVVEFDILNSR 335
+++ +L++P A L + S + I+ T + A + ++ A+ VE+ ++D SR
Sbjct: 224 LIVDGSLSVPLNAQILRNESASRCIIATTKAADENKLLRMRETFAADKVEIWQYD--TSR 281
Query: 336 -----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
D++ RG SIL E GGTLA + S LI ++ +APK+ G + +P+S
Sbjct: 282 QVPLPDLLRDIAARGLNSILLEGGGTLAGKMLESRLIDQIMFMLAPKLAG--SGFSPLSG 339
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISG 418
L + MS+A+ + + ++G + +G
Sbjct: 340 LHLASMSEAVTVSQLVVCELGGNYSFTG 367
>gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon
phaeoclathratiforme BU-1]
Length = 366
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-- 101
+D ++RRA ++A AG SP+P G +I G++ GEGY G AEV A+ +
Sbjct: 5 DDLFFMRRALELAVLGAGSVSPNPMVGAVIVCD-GEIIGEGYHQQFGGPHAEVHAIASVE 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+ +EP G S L V+ GI RVV+G R+P + G+ + L++
Sbjct: 64 DEALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V ++ + EA C+ N I T+ +PF K A TLD
Sbjct: 124 GIRV--------TEGVLEAE--CIGCNEAFIKSHTTGLPFVCLKLAQTLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA S G + WI+ + SR V LR DAV+VG TVR D+ +LT R+ G P R
Sbjct: 164 --GKIATSLGASRWITGEESRSEVHRLRSIYDAVMVGEATVRADDAQLTVRNCSGRNPQR 221
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVV--TQRGARRKFQKYLASRGVEVVEFD----ILNS 334
+VL L LP E+ ++ S+APTIVV T A K + L RGV V+ D L+
Sbjct: 222 VVLDSQLRLPLESKIFG-SEAPTIVVASTSFSASPKVAQ-LRERGVTVLFVDEHVGKLDL 279
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
R + H RG LS+L E G L+A+ + L+ K+ FVAPK+ GG +A + + LG+
Sbjct: 280 RQALVELHKRGILSVLVEGGSRLSAAFVREKLVDKILIFVAPKLFGG-DALSAFAPLGVS 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGFL 420
QA+DL G D+L+ ++
Sbjct: 339 MPDQAVDLRFGRPHFFGHDLLLEAYI 364
>gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 364
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 196/379 (51%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP CH T + L++ GI +V +G +P + G+ LR G+
Sbjct: 62 DLSGATAYVTLEPC-CHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ + EE C +N H ++ P+ + KYAMT D
Sbjct: 121 EV------VEGLLKEE----CDALNPIFFHYIQTKCPYVLMKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 159 GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIV 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L P + L + + T++ T +K +++ GVEV+ N R D+
Sbjct: 219 CDSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEVLVCKARNKRVDLQDL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + S+L E G +L+ SA+ SG++++V ++APK++GGK A TP+ G+ ++
Sbjct: 278 LQKLGEMQIDSLLLEGGSSLSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQID 337
Query: 398 QALDLIDICYEQVGPDMLI 416
QA+ L E +G D+L+
Sbjct: 338 QAVKLKLKSTELIGEDILL 356
>gi|385830529|ref|YP_005868342.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-5-phosphoribosylamino uracil reductase
[Lactococcus lactis subsp. lactis CV56]
gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-5-phosphoribosylamino uracil reductase
[Lactococcus lactis subsp. lactis CV56]
Length = 362
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A +A K G +P+P G LI G++ G+GY G AE+ A +
Sbjct: 3 KDEYYMDLAIVLAKKGGGNVNPNPQVGALI-VKEGRIIGQGYHEKYGKAHAEINAFKDCN 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP G A+++ GI RVV+G +P + G+ ++A+R G+
Sbjct: 62 ESPEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + ++E K C +N + + +P+ + KYAMTLD
Sbjct: 122 EVSL-------NVLE---KECEELNKIFFYYVSQGLPYVMMKYAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S+G + WI+ + +R +V R R A+++G T+ D+P+L+ R G P+RI+
Sbjct: 160 GKIATSAGQSKWITGEIARQKVHQDRSRFMAIMIGVETLILDDPQLSVRLENGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL----NSRDV 337
L P + + ++ PTI+ T K +L + G E++ L N +++
Sbjct: 220 CDTHLRSPLASKIVSTATEIPTIIATAESDPEKQAPFLKA-GCEIILVSCLEGRLNLKEL 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++G SI+ E GGTL ASA+ +G++ KV ++A KI GGK AP+PV G+ + +
Sbjct: 279 TKKLGEKGIDSIILEGGGTLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPN 338
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
QA L +G D+L+ L
Sbjct: 339 QAYLLEGAQITYLGEDILLESEL 361
>gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
Length = 369
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 196/378 (51%), Gaps = 31/378 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+R A A K G T+P+P GC+I G+V G G+ GT AEV A++A G
Sbjct: 8 MMRLALCEARKGVGKTAPNPAVGCVI-VRDGEVVGTGWHKKAGTPHAEVHALKAAGEKAA 66
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA AY+ +EP G AL++A + RV V + +P + G+ ++ L+ G+ V V
Sbjct: 67 GADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDAGIAVEV 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+R+ +N P I +R+PF V K A+TLD GK A
Sbjct: 127 ------GLLEEESRE----LNLPFIKWIQTRLPFVVLKSALTLD------------GKSA 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+SG + W++S +R V LRGR DA++VG TV +D+P LT R GG P+R+++ T
Sbjct: 165 TASGDSKWVTSDRARREVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPGGKDPLRVIVDST 224
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYF 341
L +P A + V S A TI+ T G K Q L + GVE++ + R D+
Sbjct: 225 LRIPLHAAVLGVPSKAQTIIATCSGDEAKMQ-ALKAHGVEILTCCESDGRVDLADLFVKL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
RG S+L E G LA +A+ +GLI K F+APK++GG E G M+ A+
Sbjct: 284 GARGVQSVLLEGGSHLAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGE-GATLMADAIR 342
Query: 402 LIDICYEQVGPDMLISGF 419
L + ++VG D+L+ G
Sbjct: 343 LEQMRVKRVGVDLLVEGV 360
>gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905]
gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905]
Length = 375
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A D+A + G T+P+P G +I + + G G G AEV A G
Sbjct: 9 KDEKYMQLALDLAASAKGNTNPNPLVGAVIVKND-IIVGTGLHRKAGEPHAEVHAFRMAG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP G + LV ++G++RVVV +++P + G+ ++ LR G+
Sbjct: 68 EHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRDAGI 127
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + ++AR+ +N IH ++ PF + K+AMT+D
Sbjct: 128 AVEV------GVLEQQARR----LNERFIHNMLTKRPFVISKFAMTVD------------ 165
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +GH+ W++ +R+ V +R D ++VG TV DNP LT R G G P R
Sbjct: 166 GKIATHTGHSKWVTGDAAREDVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRD 336
I++ L P +AN+++ +APTI+V ++ +G+ V+ + LN +
Sbjct: 226 IIMDSLLRSPLDANVFNTEEAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDE 285
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ ++ G IL E G + AS + G I K +VAPK++GG + TP + M
Sbjct: 286 MLARLYEHGITDILLEGGSKVNASFLQQGAIDKYVIYVAPKVLGGNLSLTPFAGDNPSFM 345
Query: 397 SQALDLIDICYEQVGPDMLISGF 419
++A D+ ++++G D+ I +
Sbjct: 346 NEAWDIEFASFDKIGEDLRIIAY 368
>gi|8039802|sp|P50853.2|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
Length = 376
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 195/383 (50%), Gaps = 30/383 (7%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 10 FKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAV 68
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR
Sbjct: 69 LHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLR 128
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V ++ + EE C +N H ++ P+ + KYAMT D
Sbjct: 129 QAGVEV------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD-------- 170
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P
Sbjct: 171 ----GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQP 226
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-- 335
+RIV L P + L + + T++ T +K +++ GV+V+ N R
Sbjct: 227 VRIVCDSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQF-RPLGVDVLVCKARNKRVD 285
Query: 336 --DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+++ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+
Sbjct: 286 LQDLLQKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGI 345
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
++ QA+ L E +G D+L+
Sbjct: 346 QQIDQAVKLKLKSTELIGEDILL 368
>gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
M21/2]
gi|158443838|gb|EDP20842.1| riboflavin biosynthesis protein RibD [Faecalibacterium prausnitzii
M21/2]
Length = 374
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 189/379 (49%), Gaps = 30/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G+TSP+P G ++ G++ G+G+ G AE A+ +
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVV-VKEGRIIGQGWHQRYGQAHAERNALASCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G V A++ AGI RVVVG +P + G+ + LR+ G+
Sbjct: 62 DPQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGI- 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ +++E C +N H T++ PF KYAMT+D G
Sbjct: 121 ------DVTENVLQE---ECDALNKVFFHYITTKRPFVSMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R+ V R R ++VG T+ D+P LT R GG P+RI+
Sbjct: 160 KIATYTGASKWITGEIARNHVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRDPVRIIC 219
Query: 284 TQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
L P ++ + PTI+ T G K Y + G V+ + +N +M
Sbjct: 220 DTHLRTPLQSQVVMTAKQVPTILATCCGDPEKQAAYQQA-GCRVLCLEAHCGHVNLLQLM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E SIL E GGTL SA+ SG++ +V A++APK+ GG++A P+ G+
Sbjct: 279 EQLGQEQIDSILLEGGGTLNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDA 338
Query: 399 ALDLIDICYEQVGPDMLIS 417
A L + EQ+G D LI
Sbjct: 339 AFRLKNSRLEQLGKDFLIE 357
>gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Carnobacterium sp. AT7]
gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Carnobacterium sp. AT7]
Length = 351
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 190/372 (51%), Gaps = 29/372 (7%)
Query: 55 IADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLN 114
+A K G+T+P+P G +I G+V G+GY G AEV A+ + GAT Y+
Sbjct: 1 MARKGKGWTTPNPLVGAIIVKG-GRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVT 59
Query: 115 MEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQS 173
+EP G S L+ I RVVVG +P + G+ + LRS G++V +
Sbjct: 60 LEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEV------VTG 113
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAA 233
+ EE++K +N I ++ PF V K AM+LD GKIA +G +
Sbjct: 114 VLEEESQK----LNEIFIKYIVTKEPFVVMKNAMSLD------------GKIATVTGESQ 157
Query: 234 WISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEA 293
WIS ++SR +V LR ++VG T+ +D+P+LT+R P+RIV+ L +P +
Sbjct: 158 WISGESSRKQVHSLRHELAGIMVGIETIIKDDPQLTSRTLNSRNPIRIVVDSQLRIPIAS 217
Query: 294 NLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVMEYFHDRGYLS 348
+ D A TIV T R A ++ L +EV+ + ++ +++M+ +G S
Sbjct: 218 KVLTQQDKAKTIVATTRRANKEKLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDS 277
Query: 349 ILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE 408
IL E G L SA+ G++ K+ +++APKIIGGK A T V G+ + A + +
Sbjct: 278 ILLEGGANLNFSALEEGIVDKIQSYIAPKIIGGKEAKTAVEGAGVHSLKNAFQIDRMTPV 337
Query: 409 QVGPDMLISGFL 420
VG D+ + G++
Sbjct: 338 MVGEDLFVEGYI 349
>gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
Length = 364
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 199/378 (52%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A+K+ G+T+P+P GC+I + ++ EGY G AE A+ +
Sbjct: 3 DFDYMARAIALAEKARGWTNPNPLVGCVIVKND-EILAEGYHERIGGWHAERNAILNSSA 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP HG S L++ GI++V +G R+P + G+ V+ L+ G++
Sbjct: 62 DLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + R+ C +N H ++ P+ + KYAMT D G
Sbjct: 122 V----------VTDFMREECDRLNPIFFHYIQTKRPYVLLKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ + +R +V + R + A++VG TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGELARAKVQETRHQYSAIMVGVETVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L P + L + + TI+ T +K ++ GV+V+ + R D++
Sbjct: 220 DSSLRTPLDCQLVQTAKEYRTIIATVSDDLQKIAQF-QPLGVDVLVCKAKDKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ +G++++V ++APK++GG+ A TP+ G+ +SQ
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLQLQSTELIGEDILL 356
>gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP]
gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP]
Length = 368
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 198/379 (52%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A+++ G+T+P+P GC+I + ++ EGY G AE A+
Sbjct: 3 DVDYMARAIALAEQARGWTNPNPLVGCVIVKN-DQIIAEGYHQKVGEWHAERNAILNCQQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP CH T L++ GI +V VG R+P + G+ ++ L++ G+
Sbjct: 62 DLTGATAYVTLEPC-CHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V I + R++C +N H + P+ + KYAMT D
Sbjct: 121 EV----------ITDFMREACDQLNPIFFHYMQTTSPYVLLKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA ++G + WIS + +R V R + A++VG TV DNP L +R P+R+V
Sbjct: 159 GKIATATGESKWISGELARQNVQITRHQYSAIMVGVGTVLADNPMLNSRMPNAKQPIRVV 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEY 340
L P L + PTI+ T K + L + GV++++ + N + D+++
Sbjct: 219 CDSHLRTPLACQLVQTARQYPTIIATASTDSTKIAQ-LKAFGVQIIQCKVANKQVDLVDL 277
Query: 341 FHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
G + S+L E G TL SA+ +G+++++ ++APK++GG A +P+ G+++++
Sbjct: 278 LAKLGAMQIDSVLLEGGSTLNFSALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLA 337
Query: 398 QALDLIDICYEQVGPDMLI 416
+A++L + +G D+L+
Sbjct: 338 EAVNLTLKSTQYIGDDILL 356
>gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 364
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 195/379 (51%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP CH T + L++ GI +V +G +P + G+ LR G+
Sbjct: 62 DLSGATAYVTLEPC-CHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ + EE C +N H ++ P+ + KYAMT D
Sbjct: 121 EV------VEGLLKEE----CDALNPIFFHYIQTKCPYVLMKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 159 GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIV 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L P + L + + T++ T +K +++ GVEV+ N R D+
Sbjct: 219 CDSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEVLVCKARNKRVDLQDL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++
Sbjct: 278 LQKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQID 337
Query: 398 QALDLIDICYEQVGPDMLI 416
QA+ L E +G D+L+
Sbjct: 338 QAVKLKLKSTELIGEDILL 356
>gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1]
Length = 373
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 188/386 (48%), Gaps = 38/386 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+RRA ++A + GFTSP+P G +I GK+ GEG+ G AE A + G
Sbjct: 6 YMRRALELAQRGMGFTSPNPMVGAVIVRD-GKIIGEGWHKKYGELHAERTAFAYCDENGI 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
C GA Y+ +EP HG A+++ GI RV +G +P + G+ V+ LR G++
Sbjct: 65 DCTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREHGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ED+ R+ C +N H T PF KYAMTLD G
Sbjct: 125 V---TEDV-------LREECDAINGIFFHWITHNWPFVTVKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R V R R A++VG TV D+P LT R G P+RI+
Sbjct: 163 KIATHTGESKWITGEEARLDVQRERLRHSAIMVGIGTVLADDPMLTCRLENGRDPIRIIC 222
Query: 284 TQTLNLPEEANLWDVS-DAPTIVV----TQRGARRKFQK--YLASRGVEVVEFDI----L 332
L +P ++N+ + D PTI+ ++ R K +K L G ++ +
Sbjct: 223 DSRLRIPLDSNIVKTAKDVPTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHV 282
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ +M + SIL E GG L S L+ +V A++APKI GGK+A +PV G
Sbjct: 283 DLYTLMLKLREMKIDSILVEGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWG 342
Query: 393 MVEMSQALDLIDICYEQVGPDMLISG 418
+ + A + + ++G D+LI G
Sbjct: 343 IPTPNDAYMIENTQIRRIGEDILIEG 368
>gi|374603590|ref|ZP_09676568.1| riboflavin biosynthesis protein RibD [Paenibacillus dendritiformis
C454]
gi|374390892|gb|EHQ62236.1| riboflavin biosynthesis protein RibD [Paenibacillus dendritiformis
C454]
Length = 389
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 199/380 (52%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A+++ G TS +P GC+I G+V G G +G AEV A++ G
Sbjct: 7 DEFYMKLALDMAERAMGQTSINPAVGCVI-VREGRVVGLGAHLQRGEGHAEVHALQMAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP +G S L++AGI RVV+G +P + G+ + LR QG++
Sbjct: 66 AARGATAYVTLEPCSHYGKTPPCSLRLLEAGIKRVVIGSLDPNPAVSGRGAKLLREQGVE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + +++ A ++ + + A I T+ +P+ K A TLD G
Sbjct: 126 V-------VAGVLQPAAEALIEMFAKYI---TTGLPYVTLKTASTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
+IA +G + WIS++ +R+RV +R R A++ G TV DNP LT R G P R++
Sbjct: 164 RIATHTGDSRWISNEQARERVHAMRHRHQAIMAGIGTVLADNPSLTTRLAVPGLHPTRLI 223
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVME 339
+ L LP EA + APTIV T K ++ L +RGV+V+ + ++ R +ME
Sbjct: 224 VDSQLRLPLEAKVVADRSAPTIVFTTSRVDAKKREELEARGVQVIAAGDGPQVDLRRMME 283
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ + SIL E GG L + + + +V F AP I+GG +P + G+ M+ A
Sbjct: 284 WCGSQEIGSILLEGGGRLNGAMLEGRWVDRVVLFYAPTIVGGAGSPANFAFDGISRMNDA 343
Query: 400 LDLIDICYEQVGPDMLISGF 419
L E +G ++ ISG+
Sbjct: 344 YRLRHTRVETLGDNVCISGY 363
>gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
2603V/R]
gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
A909]
gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
H36B]
gi|406709239|ref|YP_006763965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
GD201008-001]
gi|410594308|ref|YP_006951035.1| Riboflavin biosynthesis protein RibD [Streptococcus agalactiae
SA20-06]
gi|421532522|ref|ZP_15978881.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
STIR-CD-17]
gi|424049686|ref|ZP_17787237.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
ZQ0910]
gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae
2603V/R]
gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
A909]
gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
H36B]
gi|389648959|gb|EIM70448.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
ZQ0910]
gi|403642239|gb|EJZ03099.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
STIR-CD-17]
gi|406650124|gb|AFS45525.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
GD201008-001]
gi|410517947|gb|AFV72091.1| Riboflavin biosynthesis protein RibD [Streptococcus agalactiae
SA20-06]
Length = 369
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQEGIDSLLIEGGSSLHFSALKAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
5159]
gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
5159]
Length = 382
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 187/392 (47%), Gaps = 36/392 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA +A ++ G +P+P G +I G+V GEG G AE+ A++ G
Sbjct: 8 DRYWMQRAIALARRAQGRVAPNPAVGAVI-VREGEVVGEGCTQPPGGPHAEIVALQRAGE 66
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP +G V A+VQAGI RVV I +P + G+ LR G+
Sbjct: 67 RARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLRQAGVD 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ VNA + R +P KYAMTLD G
Sbjct: 127 VTV----------GIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------HGGGH 276
IA +GH+ WI+ + +R LR + DA++VG TV D+P LT R GG H
Sbjct: 165 HIATRTGHSKWITGQEARRYAHQLRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPH 224
Query: 277 TPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
+P+R+V+ P A L D A T+V+T A + L G E+ +
Sbjct: 225 SPLRVVIDTRARTPPSARLLDSRLPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGH 284
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
++ + +RG +L E GG + S GL V AF+AP ++GG AP P++
Sbjct: 285 VDLAAALRVLAERGINRVLVEGGGRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGE 344
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
G+ M A L + QVG D++I G L+PI
Sbjct: 345 GVARMEDAPRLTGVRVRQVGDDLVIEGRLRPI 376
>gi|421146758|ref|ZP_15606461.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
GB00112]
gi|401686465|gb|EJS82442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
GB00112]
Length = 369
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQEGIDSLLIEGGSSLHFSALEAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
DSM 20731]
gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
DSM 20731]
Length = 371
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 188/383 (49%), Gaps = 28/383 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A+K+ G TSP+P GC+I G++ G+GY + G AE+ A+ G+
Sbjct: 9 DEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMADAGN 68
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G TAY+ +EP +G AL++AGI +VV +P + G+ L+ G++
Sbjct: 69 QVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEAGVE 128
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + ++A + N +H + PF KYAMTLD G
Sbjct: 129 V------VRGVLADKANRQ----NEVFMHWMKTGRPFVALKYAMTLD------------G 166
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +SG + WIS++ SR LR D ++VG NTV D+P LT R G P+RIVL
Sbjct: 167 KIATASGDSKWISNEQSRTYAHKLRSIYDCILVGKNTVLNDDPSLTCRLVEGKNPLRIVL 226
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQ-RGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
LP + ++ +A T++VT + R K + A V V + N +
Sbjct: 227 DSHCQLPMDRKVFTDGEARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILL 286
Query: 343 DR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
DR S+L E G + + L +V+AF+AP +IGGK + G M
Sbjct: 287 DRLGQQEKTSVLVEGGSQVHGAFFDGRLAQRVYAFIAPCLIGGKRNLGAIGGRGARNMDL 346
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
+ L + YE G D++++G L+
Sbjct: 347 RVTLQEPQYEAFGTDLMVTGLLE 369
>gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
Length = 361
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 27/376 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +IA G TSP+P G ++ G++ G G G AEV A+ G
Sbjct: 4 DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKD-GEIVGFGAHLKAGELHAEVHAIRMAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+G+T Y+ +EP +G LV+ G+ RVV+ +P + G+ + LRS G+
Sbjct: 63 KAKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGID 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + EEA + +N H ++ PF KYA +LD G
Sbjct: 123 VKL------GVLKEEADE----LNRVFFHYIAAKTPFVTLKYASSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA ++G + WI+S+ +R+ V R DA++VG NTV DNP LT R GG P+RIV
Sbjct: 161 KIATTTGESKWITSEAAREDVHRYRAVHDAILVGVNTVIADNPSLTVRLPEGGKNPIRIV 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L P +AN+ + A T +V + +K V+++ ++ +++
Sbjct: 221 LDTHLRTPLDANILNDGQAETWIVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRV 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++ S+ E G + S + + ++++ A+ APKIIGGK APTP+ +G M+ +
Sbjct: 281 LGEKRITSLFVEGGSHVHDSFVRAKAVNEIVAYFAPKIIGGKQAPTPIGGIGFAGMADVM 340
Query: 401 DLIDICYEQVGPDMLI 416
L E +GPD+ I
Sbjct: 341 QLEIRRVETIGPDIKI 356
>gi|390564662|ref|ZP_10245440.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Nitrolancetus hollandicus Lb]
gi|390172097|emb|CCF84765.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Nitrolancetus hollandicus Lb]
Length = 386
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 204/403 (50%), Gaps = 40/403 (9%)
Query: 36 VFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAE 95
+ + SRA D ++ RA +A ++ G T+P+P G ++ G VAGEG+ G + AE
Sbjct: 3 IEIETSRAVDLQWMNRALAVASRARGRTAPNPPVGAVLVRD-GVVAGEGWTERPGQRHAE 61
Query: 96 VQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAV 154
+ A++ GS RGAT Y+ +EP G + ALV AGI R V+ +R+P + G+ +
Sbjct: 62 IMALDQAGSLARGATLYVTLEPCAHFGRTPPCTDALVDAGIARAVISVRDPYPQVDGRGI 121
Query: 155 RALRSQGLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
L G++V + LG AR+S L NA R + +P K+AM+LD
Sbjct: 122 AHLARNGIRVELGLG----------ARESVQL-NAGFFKRIRTGLPEVTAKFAMSLD--- 167
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH- 272
GKIA +GHA W++ +R LR DA++VG TV D+P+LT R
Sbjct: 168 ---------GKIATHTGHARWVTGPEARQEAHRLRDTHDAILVGLGTVLADDPQLTTRLS 218
Query: 273 ------GGGHTPMRIVLTQTLNLPEEANLWDVSDAP--TIVVTQRGARRKFQKYLASRGV 324
GG P+R+V+ P + + D P T+VVT A + + L + G
Sbjct: 219 EAEAGIGGPSHPLRVVVDSRARTPLTSAMLR-PDLPGTTLVVTTDQAPFRAARALQAAGA 277
Query: 325 EVVEFDILNSR-DVMEYFHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
EV+ + R D++ + RG S+L E GG L S S+GL+ +V AF+AP I+G
Sbjct: 278 EVLVLPASDGRVDLLVLLQELGRRGINSVLVEGGGALLGSLFSAGLLDRVVAFIAPVIVG 337
Query: 381 GKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
G AP P+ G+ M +A L ++ + G D+ ISG L I
Sbjct: 338 GDGAPAPIGGDGVDTMDEARRLGNVEVRRFGQDLAISGTLSGI 380
>gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Faecalibacterium prausnitzii SL3/3]
Length = 374
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 188/379 (49%), Gaps = 30/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G+TSP+P G ++ G++ G+G+ G AE A+ +
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVV-VKEGRIIGQGWHQRYGQAHAERNALASCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G V A++ AGI RVVVG +P + G+ + LR+ G+
Sbjct: 62 DPQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGI- 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ +++E C +N H T++ PF KYAMT+D G
Sbjct: 121 ------DVTENVLQE---ECDALNKVFFHYITTKRPFVSMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + R+ V R R ++VG T+ D+P LT R GG P+RI+
Sbjct: 160 KIATYTGASKWITGEIVRNHVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRDPVRIIC 219
Query: 284 TQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
L P ++ + PTI+ T G K Y + G V+ + +N +M
Sbjct: 220 DTHLRTPLQSQVVMTAKQVPTILATCCGDPEKQAAYQQA-GCRVLCLEAHCGHVNLLQLM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E SIL E GGTL SA+ SG++ +V A++APK+ GG++A P+ G+
Sbjct: 279 EQLGQEQIDSILLEGGGTLNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDA 338
Query: 399 ALDLIDICYEQVGPDMLIS 417
A L + EQ+G D LI
Sbjct: 339 AFRLKNSRLEQLGKDFLIE 357
>gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus lactis subsp. lactis KF147]
gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus lactis subsp. lactis KF147]
Length = 362
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 192/383 (50%), Gaps = 30/383 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A +A K G +P+P G LI G++ G+GY G AE+ A +
Sbjct: 3 KDEYYMDLAIVLAKKGGGNVNPNPQVGALI-VKEGRIIGQGYHEKYGEAHAEINAFKDCN 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP G A+++ I RVV+G +P + G+ ++A++ G+
Sbjct: 62 ESPEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + ++E K C +N + + +P+ + KYAMTLD
Sbjct: 122 EVSI-------NVLE---KECEELNKIFFYYVSQGLPYVMMKYAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA S+G + WI+ + +R +V R R A+++G T+ D+P+L+ R G P+RI+
Sbjct: 160 GKIATSAGQSKWITGEIARQKVHQDRSRFMAIMIGVETLILDDPQLSVRLENGKNPIRII 219
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL----NSRDV 337
L P + + S+ TI+ T K +L G E++ L N +++
Sbjct: 220 CDTHLRSPLASKIVSTASEISTIIATAESDPEKQAPFLKV-GCEIILVSCLEGRLNLKEL 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++G SI+ E GGTL ASA+ +G+I KV ++APKI GGK AP+PV G+ +
Sbjct: 279 TKKLGEKGIDSIILEGGGTLNASALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPN 338
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
QA L +G D+L+ L
Sbjct: 339 QAYLLEGAQITYLGEDILLESEL 361
>gi|339301775|ref|ZP_08650861.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC
13813]
gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQDGIDSLLIEGGSSLHFSALEAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
CJB111]
gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
CJB111]
Length = 369
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFYMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQEGIDSLLIEGGSSLHFSALKAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|381208996|ref|ZP_09916067.1| riboflavin biosynthesis protein RibD [Lentibacillus sp. Grbi]
Length = 369
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 190/375 (50%), Gaps = 26/375 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A +G T P+P G ++ + G++ G G G AEV A++ G
Sbjct: 3 DEHYMQMALNLASSVSGQTGPNPPVGAVVVKN-GEILGVGAHLKAGGPHAEVHALQMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G + L+ + G++R V+ I++P + + G+ + L + G+
Sbjct: 62 KAKGATIYVTLEPCSHYGKTPPCADLIIEMGLSRAVIAIKDPNEKVAGRGIEKLEAAGV- 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D++ +++ K VN H ++ P+ K A++LD G
Sbjct: 121 ------DVELGVLQ---KEAAAVNKFFFHYIRTKTPYVTMKSAVSLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
K A +G + W++ + +R V R DA++ G T+ DNP LT R GG P+RI+
Sbjct: 160 KTATHTGDSKWVTGEAARRDVHQYRHIHDAILAGVKTILADNPSLTVRIPNGGKNPLRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARR-KFQKYLASRGVEVVEFDILNSRDVMEYF 341
L L P +AN+ + A T + T+ R K + + GV ++ D L+S V+ Y
Sbjct: 220 LDSDLRTPTDANVVNDQQADTWIFTKEHIREEKMEPFKEKSGVSIIPLDSLDSVTVLNYL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
R +S+ E G + S + SG I+++ ++APK+IGGK+AP+ ++ G M++ L
Sbjct: 280 GSRKIMSLFVEGGSAVNGSFLESGKINQLVQYMAPKLIGGKDAPSSIAGNGFRHMTETLP 339
Query: 402 LIDICYEQVGPDMLI 416
L E +G D+ +
Sbjct: 340 LDITNVEMIGEDIKV 354
>gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 374
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 189/379 (49%), Gaps = 30/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G+TSP+P G ++ G++ G+G+ G AE A+ +
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVV-VKEGRIIGQGWHQRYGQAHAERNALASCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G V A++ AGI RVVVG +P + G+ + LR+ G+
Sbjct: 62 DPQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGI- 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ +++E C +N H T++ P+ KYAMT+D G
Sbjct: 121 ------DVTENVLQE---ECDALNKVFFHYITTKRPYVSMKYAMTMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R+ V R R ++VG T+ D+P LT R GG P+RI+
Sbjct: 160 KIATYTGASKWITGEIARNHVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRDPVRIIC 219
Query: 284 TQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVM 338
L P ++ + PTI+ T G K Y + G V+ + +N +M
Sbjct: 220 DTHLRTPLQSQVVMTAKQVPTILATCCGDPEKQAAYQQA-GCRVLCLEAHCGHVNLLQLM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E SIL E GGTL SA+ SG++ +V A++APK+ GG++A P+ G+
Sbjct: 279 EQLGQEQIDSILLEGGGTLNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDA 338
Query: 399 ALDLIDICYEQVGPDMLIS 417
A L + EQ+G D LI
Sbjct: 339 AFRLKNSRLEQLGKDFLIE 357
>gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 368
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 196/386 (50%), Gaps = 35/386 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---E 100
+D ++ RA ++A G T +P GC+I + K+ GEGY G+ AEV A+ +
Sbjct: 5 DDRYFMSRAIELAKNGIGATKTNPLVGCVIVRNE-KIIGEGYHKVFGSCHAEVNAINDAK 63
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
A G GAT Y+N+EP +G +++ ITRVV+G +P + + G+ + L++
Sbjct: 64 AKGENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKN 123
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V V +++E C +N + PF V K MT+D
Sbjct: 124 AGIEVEV-------GVLKE---ECEKLNERYFTYIKNNRPFVVLKSGMTID--------- 164
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTP 278
GKIA + + WI+S+ SR +LRG D ++VG NTV +D+P L R G H+P
Sbjct: 165 ---GKIATKTYESQWITSEESRKFSHELRGMCDGIMVGINTVLKDDPTLNVRAGRYPHSP 221
Query: 279 MRIVLTQTLNLPEEANLW--DVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFD-IL 332
RI++ L + A + D+ + I T+ + KF+ V VV E D ++
Sbjct: 222 ARIIVDSKLRIFPSAKVLSKDLENIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMV 281
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ RD+ME SIL E GG+L AS + L+ K + F+APKIIG + + + +G
Sbjct: 282 DLRDLMEKLKTFNISSILLEGGGSLNASMLREKLVDKFYFFIAPKIIGS-DGVSAIGSMG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLISG 418
+ ++ +A+D+ D+ ++ D+ I G
Sbjct: 341 IEKLDEAIDIKDVEVIKIATDIFIKG 366
>gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
Length = 369
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQDGIDSLLIEGGSSLHFSALKAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
marina DSM 3645]
gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
marina DSM 3645]
Length = 373
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 33/389 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+FS A+D ++R A +A G P+P GC++ G+V G GY G AE A
Sbjct: 2 QFS-ADDERHMREALQLAALGQGAAEPNPMVGCVL-VQHGQVIGRGYHAKYGGPHAERAA 59
Query: 99 V-EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVR 155
+ + G GATAY+ +EP CH T AL+ A + RVV+ ++P + G +
Sbjct: 60 LSDCGDKQVNGATAYVTLEPC-CHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGID 118
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L++ G+ V V + EA++ +NAP + P+ + K+AMTLD
Sbjct: 119 QLKAAGISVQV------GLLEAEAQR----LNAPYRKLLATGRPWVIAKWAMTLD----- 163
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275
GK+A +GH+ WIS++ +R+RV LRGR DA+VVG T + D+P LT R G
Sbjct: 164 -------GKLATHTGHSRWISNELARERVHQLRGRMDAIVVGSRTAQLDDPLLTVRPAGL 216
Query: 276 HTPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS 334
TP+R+V+ L P + + P +V + A L G E+ +
Sbjct: 217 RTPLRVVVDGDATLSPTHQLVQTAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADH 276
Query: 335 RDVMEY----FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ R +IL E G L ++ G I +VFAF+APK+IGG AP+P+
Sbjct: 277 GQRLDALLIELGQRRLTNILVEGGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGG 336
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGF 419
G +MS+AL L D+ E +G ++L+ G
Sbjct: 337 DGWSDMSEALALSDVSIESLGDNVLMHGL 365
>gi|420158031|ref|ZP_14664854.1| riboflavin biosynthesis protein RibD [Clostridium sp. MSTE9]
gi|394755179|gb|EJF38441.1| riboflavin biosynthesis protein RibD [Clostridium sp. MSTE9]
Length = 366
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 196/378 (51%), Gaps = 33/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A K G+ +P+P G +I G++ G+GY G AE A+ + S
Sbjct: 3 DTEYMSLAVELAKKGCGWVNPNPMVGAVIVRD-GQIIGQGYHEKYGALHAERNALASCES 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A++++GI RVV+G R+P + G+ + LRS G+
Sbjct: 62 PPAGATIYVTLEPC-CHYGKTPPCTDAILESGIRRVVIGSRDPNPQVSGKGIAILRSHGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++++ +E C +N H P+ V KYAMTLD
Sbjct: 121 EV------TENRLKDE----CDALNQSFFHYIQKGTPYVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA G + WI+ + +R RV + R R A++VG TV D+P LT R P+RI+
Sbjct: 159 GKIATHQGKSQWITGEAARRRVHEDRHRYSAIMVGVGTVLADDPLLTCRMENSRNPLRII 218
Query: 283 LTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDV 337
+L P +A L + A T++ T R K + YL + G ++V + ++ +
Sbjct: 219 CDTSLRTPLQARLITSTAIAGTLLATAVTDREKHRPYLEA-GCDIVVIPEKEGHIDLNCL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M +R S+L E GGTL SA+ SG+++++ A++APK+ GG +A TPV+ G+
Sbjct: 278 MRVLGERKIDSVLLEGGGTLNWSALQSGIVNRIQAYIAPKLFGG-SAKTPVAGPGVDSPQ 336
Query: 398 QALDLIDICYEQVGPDML 415
+A L Q+G D+L
Sbjct: 337 EAFRLGKPTITQLGEDIL 354
>gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 364
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GVEV+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|406972152|gb|EKD96000.1| hypothetical protein ACD_24C00224G0002 [uncultured bacterium]
Length = 358
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 197/380 (51%), Gaps = 29/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +IR+ ++A K G+T+P+P G +I + + G+G+ + G AE++A+
Sbjct: 4 DEIFIRQTLNLAKKGLGWTNPNPMVGAVIVKNNSMI-GQGFHHKAGHPHAEIEALNNLTE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+N+EP G A+++ GI +VV +P RG+ + L+ + ++
Sbjct: 63 DPTGATLYVNLEPCSNFGRTPPCTEAIIKHGIKKVVCATPDPNPENRGKGILKLQKENIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + +EA+K +N + PF K+A +LD G
Sbjct: 123 VTV------GVLKDEAKK----LNETFFTFHEKKRPFVAIKFAASLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+++ +R +LRG+ AV+VG NTV DNP L R G P++I+L
Sbjct: 161 KIATRTGDSKWITNEKARIYARNLRGQYQAVLVGINTVLTDNPDLGTRIKGKKYPIKIIL 220
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYF 341
L +P A + + D I+VT A RK ++ L ++G ++ FD + +++
Sbjct: 221 DPRLQIPINAQV--LRDQNVILVTTTKAERKKKEQLENKGFTILVFDSEHIKIEELLSVL 278
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
++ +SIL E GG S + S +I KV+AF AP IIGGKNA + + G + QAL
Sbjct: 279 KEKEIISILVEGGGETLGSFVDSKIIDKVYAFHAPIIIGGKNAIS-IGGKGAQTIQQALQ 337
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L +I Y++ ++L G+++
Sbjct: 338 LKNISYKKFDDNLLRIGYVE 357
>gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
2876]
gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
2876]
Length = 360
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A K G+TSP+P G +I G++ GEGY G AE A++
Sbjct: 3 DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKD-GRIIGEGYHAIYGDLHAERNAIKNLTV 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G A++ AGIT+VV+G R+P + G+ LRS G++
Sbjct: 62 DAKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ED R+ C +N H T + P+ V KYAM++D G
Sbjct: 122 VI---EDFM-------REECDELNPIFFHYITEKTPYVVMKYAMSMD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + +++++ SR+ V +R + ++ G TV D+P L R G +P+RI+
Sbjct: 160 KIATRTGSSRYVTNEFSRNEVQKMRHKYRGIMAGIGTVLADDPMLNTRIEGLRSPVRIIC 219
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDVME 339
L +P + + + ++ A + L + G+ V+ E +N ++M
Sbjct: 220 DSELRIPLNSRICQTAGEYETIIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMY 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
HD SIL E GGTL S + + L++++ F+APK+IGG A +PV LG+ ++ A
Sbjct: 280 VLHDMKIDSILLEGGGTLNESMLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDA 339
Query: 400 LDLIDICYEQVGPDMLI 416
+ I E+ D+L+
Sbjct: 340 VVFKLINVEKFDDDILL 356
>gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 364
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GV+V+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQF-RPLGVDVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|403238146|ref|ZP_10916732.1| riboflavin biosynthesis protein RibD [Bacillus sp. 10403023]
Length = 362
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 186/378 (49%), Gaps = 29/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A G TSP+P G +I G+V G G G AEV A+ G
Sbjct: 3 DQDYMSLAINVAKAGVGQTSPNPVVGAVIVNE-GRVVGIGAHLKAGEPHAEVHAIRMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ ATAY+ +EP HG L+ + + RVV+ +P + G+ + L++ G++
Sbjct: 62 KAKNATAYVTLEPCSHHGKTPPCADLLITSNVKRVVIATTDPNPLVAGKGIAKLKAAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E+A + +NA H ++P+ K A TLD G
Sbjct: 122 VEV------GVCKEQADQ----LNAVFYHFLEKKLPYVTLKSATTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KIA +G + WI+ + +R+ V R DA++VG NTV DNP LT R +G G P+RI
Sbjct: 160 KIATVTGESKWITGEAARNDVHLYRSIHDAILVGVNTVLVDNPSLTTRLPNGTGKNPIRI 219
Query: 282 VLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVM 338
+L TL P + N+ + A T IVVT + + K ++ +GV V++ L+ V+
Sbjct: 220 ILDSTLRTPLDTNVVNDGKAETWIVVTNKVTQEKINEFSGKKGVRVLQLPESSLSVTAVL 279
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ SI E G + S + I++V ++APK+ GGK+APT + +G+ +
Sbjct: 280 TLLGEESISSIFVEGGAEVNGSFLKEKAINQVIVYLAPKLFGGKHAPTSIGGIGVESIDD 339
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L EQ+G D+ I
Sbjct: 340 AVQLTIKSVEQLGEDIKI 357
>gi|417005016|ref|ZP_11943609.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae FSL
S3-026]
gi|341576829|gb|EGS27237.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae FSL
S3-026]
Length = 369
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G++ Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSSLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 EGLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQEGIDSLLIEGGSSLHFSALEAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++QA + DI ++ D++I G ++
Sbjct: 335 DWLNQAFRVKDIELSRMDSDVVIEGKVE 362
>gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
18RS21]
gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
18RS21]
Length = 362
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 34/374 (9%)
Query: 56 ADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNM 115
A+K GF +P+P G +I ++ +GY G AE QA++ G+T Y+ +
Sbjct: 8 AEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKNADEDISGSTLYVTL 66
Query: 116 EPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQS 173
EP CH AL+++GI +VVVG +P + G+ + LR +GL V V
Sbjct: 67 EPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEV------- 118
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAA 233
R+ C +N I T + PF KYAMTLD GKIA +G +
Sbjct: 119 ---GILREECDALNERFIFHMTYKQPFVYLKYAMTLD------------GKIATKTGDSK 163
Query: 234 WISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEA 293
WIS++ SR V LR + A++VG NTV DNPRLT R G +RIV L +P ++
Sbjct: 164 WISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALVRIVCDSQLKIPLDS 223
Query: 294 NLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILNSRDVMEYFHDRGYL 347
L V A TI + A+++ K + R ++V D L+ + +M G
Sbjct: 224 YL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGID 281
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+ ++QA + DI
Sbjct: 282 SLLIEGGSSLHFSALKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIEL 341
Query: 408 EQVGPDMLISGFLQ 421
++ D++I G ++
Sbjct: 342 SRMDSDVVIEGKVE 355
>gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
COH1]
gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
COH1]
Length = 362
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 34/374 (9%)
Query: 56 ADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNM 115
A+K GF +P+P G +I ++ +GY G AE QA++ G+T Y+ +
Sbjct: 8 AEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKNADEDISGSTLYVTL 66
Query: 116 EPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQS 173
EP CH AL+++GI +VVVG +P + G+ + LR +GL V V
Sbjct: 67 EPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEV------- 118
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAA 233
R+ C +N I T + PF KYAMTLD GKIA +G +
Sbjct: 119 ---GILREECDALNERFIFHMTYKQPFVYLKYAMTLD------------GKIATKTGDSK 163
Query: 234 WISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEA 293
WIS++ SR V LR + A++VG NTV DNPRLT R G +RIV L +P ++
Sbjct: 164 WISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALVRIVCDSQLKIPLDS 223
Query: 294 NLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILNSRDVMEYFHDRGYL 347
L V A TI + A+++ K + R ++V D L+ + +M G
Sbjct: 224 YL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGID 281
Query: 348 SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407
S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+ ++QA + DI
Sbjct: 282 SLLIEGGSSLHFSALEAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIEL 341
Query: 408 EQVGPDMLISGFLQ 421
++ D++I G ++
Sbjct: 342 SRMDSDVVIEGKVE 355
>gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
1]
gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
1]
Length = 367
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 192/388 (49%), Gaps = 40/388 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A D+A + G TSP+P G ++ G+ G GY G AE+ A+E G
Sbjct: 4 DERYMWLALDLAAQGQGTTSPNPMVGAVLVKD-GETVGTGYHQKAGGPHAEIIALEEAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGAT Y+ +EP G V ++ AG+ +VVV +++P + + G ++ L+ G++
Sbjct: 63 AARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGIK 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +S ++EE L +N + TSR PF K AMT+D G
Sbjct: 123 V-------KSGVLEE---KALRLNEVFVKYITSRRPFVTMKAAMTMD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA + + WIS + SR+ LR +DA++VG T+ DNP LT R GG P+RIV
Sbjct: 161 KIATRTKASRWISGERSREFGHRLRHHTDAIMVGIGTLLADNPSLTTRLPEGGKNPLRIV 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV----------VEFDIL 332
+ N P ++ + + T++ A ++ L ++GV V V D+L
Sbjct: 221 VDSKANTPLDSKVVAENPEKTLIFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLL 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
M+ S+L E G L S ++SGL+ KV+ F+AP I GG APTPV G
Sbjct: 281 -----MDNLGKHEISSVLVEGGSVLNYSLLASGLVDKVYFFMAPLIFGGDTAPTPVGGTG 335
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFL 420
+ + +A + DI D+LI+G++
Sbjct: 336 VATVEEAWHVKDIEISHYDTDLLITGYI 363
>gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
Length = 370
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 33/380 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G +P+P G +I G+V G GY G AE A+ +
Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVI-VKEGRVIGRGYHQKYGGPHAEQNALSSCTE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP CH V A+++AGI+RVVVG +P + G+ +R LR G+
Sbjct: 63 PPQGAVMYVTLEP-CCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED+ R+ C +N H + PF V KYAMT+D
Sbjct: 122 SVT---EDI-------LREECAKLNEVFFHYIRTEHPFVVMKYAMTMD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GKIAA +G + WI+ + +R V LR R A++ G TV D+P LT R GG P+RI
Sbjct: 160 GKIAAVTGESKWITGEAARHHVQKLRHRYTAIMAGVGTVISDDPLLTCRGVRGGKNPVRI 219
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RD 336
+ L P A + + APT++ T + Y + G V+ N R+
Sbjct: 220 ICDTRLRTPPAARVVATAGQAPTVIATCCDDPERHMVYQEA-GCSVLTVKEKNGHVDLRE 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M +G SIL E GGTL +A+ SG++ K A++APK++GG+ + TPV G +
Sbjct: 279 LMRKLGKQGIDSILLEGGGTLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSP 338
Query: 397 SQALDLIDICYEQVGPDMLI 416
+ L + ++G D LI
Sbjct: 339 GDGIVLKNSRIIRLGEDFLI 358
>gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
Length = 356
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 185/363 (50%), Gaps = 27/363 (7%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G +I ++ G G G AE+ A++ G +GAT Y+ +EP
Sbjct: 13 GQTSPNPLVGAVIVRDN-EIVGVGAHMKAGEPHAEIHALKMAGDKAKGATIYVTLEPCSH 71
Query: 121 HG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
HG ALV+AG+ VVV +P + G+ + L+ G+QV I
Sbjct: 72 HGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQV----------ITGVL 121
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+ +L+N H T + PF K +TLD GKIA+++ + WI+S+T
Sbjct: 122 EQESILMNEVFNHFITKKTPFVTLKAGITLD------------GKIASATSDSKWITSET 169
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS 299
SR +R +DA++VG TV D+P LTAR GH P+RIVL L+ P A +
Sbjct: 170 SRYDAHHIRSINDAILVGAQTVIHDDPSLTARIPNGHHPIRIVLDSRLSTPLTAKIVTDQ 229
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVMEYFHDRGYLSILWECGGT 356
APT + T + A + + L + GV V D + ++V++ +R S++ E GG
Sbjct: 230 MAPTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQ 289
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ AS + L+ K+ ++APK+IGG+ +P+ G+ MS A++L + E +G D+ I
Sbjct: 290 INASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQLSVETLGKDIKI 349
Query: 417 SGF 419
+G+
Sbjct: 350 TGY 352
>gi|355621814|ref|ZP_09046365.1| riboflavin biosynthesis protein RibD [Clostridium sp. 7_3_54FAA]
gi|354823281|gb|EHF07614.1| riboflavin biosynthesis protein RibD [Clostridium sp. 7_3_54FAA]
Length = 370
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 33/380 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G +P+P G +I G+V G GY G AE A+ +
Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKE-GRVIGRGYHQKYGGPHAEQNALSSCTE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP CH V A++QAGI+RVVVG +P + G+ +R LR G+
Sbjct: 63 PPQGAVMYVTLEP-CCHSGKQPPCVKAILQAGISRVVVGSADPNPLVGGKGIRILREHGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED+ R+ C+ +N H + PF V KYAMT+D
Sbjct: 122 SVT---EDI-------LREECVKLNEVFFHYIRTEHPFVVMKYAMTMD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GKIAA +G + WI+ + +R V LR R A++ G TV D+P LT R GG P+RI
Sbjct: 160 GKIAAVTGESKWITGEAARHHVQKLRHRYTAIMAGVGTVISDDPLLTCRGVRGGKNPVRI 219
Query: 282 VL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RD 336
+ T+ P + APT++ T + Y + G V+ N R+
Sbjct: 220 ICDTRLRTSPAARVVATAGQAPTVIATCCDDPERHMVYQKA-GCSVLTVREKNGHVDLRE 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M +G SIL E GGTL +A+ SG++ K A++APK++GG+ + TPV G +
Sbjct: 279 LMRKLGKQGIDSILLEGGGTLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSP 338
Query: 397 SQALDLIDICYEQVGPDMLI 416
+ L + ++G D LI
Sbjct: 339 GDGIVLKNSRIIRLGEDFLI 358
>gi|399047207|ref|ZP_10739303.1| riboflavin biosynthesis protein RibD [Brevibacillus sp. CF112]
gi|433543583|ref|ZP_20499987.1| riboflavin biosynthesis protein RibD [Brevibacillus agri BAB-2500]
gi|398054814|gb|EJL46920.1| riboflavin biosynthesis protein RibD [Brevibacillus sp. CF112]
gi|432185140|gb|ELK42637.1| riboflavin biosynthesis protein RibD [Brevibacillus agri BAB-2500]
Length = 366
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 197/383 (51%), Gaps = 31/383 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++ A ++A + G TSP+P G ++ S G VAG G G AEV A+ G
Sbjct: 3 QDKRFMALALELARSAHGQTSPNPLVGAVL-VSNGAVAGMGAHLRAGEPHAEVHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP G + A+V AGI R V+ +P + G+ V LR+ G+
Sbjct: 62 EKAAGATLYVTLEPCSHFGKTPPCADAVVAAGIRRAVIATLDPNPLVAGKGVEKLRAAGV 121
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V V +GE EA++ +N H T++ PF K A TLD
Sbjct: 122 EVLVGVGE-------AEAKR----LNEVFFHYITTKRPFVTVKTASTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG---GHTP 278
GKIA+ +GH+ WI+ + +R V +LR + DA++VG TV D+P LTAR G G P
Sbjct: 160 -GKIASVTGHSRWITGERARAEVHELRRQHDAILVGVGTVLADDPLLTARQGEQLYGRQP 218
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV-VEFDILNSRDV 337
+RIVL L P A + + +DAPT + T A + + LA++GV + V ++ +V
Sbjct: 219 VRIVLDSELRTPLAARVIENADAPTWIFTTEAAPPEKRAALAAKGVRLFVASGQISVENV 278
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + G S+L E G + + + + I K+ ++V+ K+IGG APTP G M
Sbjct: 279 LDTLGECGITSLLVEGGQAVNGAFLQARAIQKIVSYVSLKLIGGSGAPTPFGGPGFATMD 338
Query: 398 QALDLIDICYEQVGP-DMLISGF 419
Q + L D E + D+ ISG+
Sbjct: 339 QTVRLADATVELLDEQDVRISGY 361
>gi|334340276|ref|YP_004545256.1| riboflavin biosynthesis protein RibD [Desulfotomaculum ruminis DSM
2154]
gi|334091630|gb|AEG59970.1| riboflavin biosynthesis protein RibD [Desulfotomaculum ruminis DSM
2154]
Length = 377
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 198/387 (51%), Gaps = 39/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A ++A ++ G TSP+P G +I G+V G+G+ G AEV A+ G
Sbjct: 6 DSHYMQMALELAARARGRTSPNPLVGAVI-VKEGQVIGKGFHAKAGGAHAEVVALMEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
R AT Y+ +EP CH T A+++AGI RVV + +P + G+ + L+ G+
Sbjct: 65 QARDATLYVTLEPC-CHYGRTGPCTEAVIKAGIKRVVAAMTDPNPLVAGKGLEVLKKAGV 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ ++E+ + +N I T++ PF + K A +LD
Sbjct: 124 EV-------KAGVLEQ---EAMHLNEAFIKYITTKRPFVILKSATSLD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA + G + WI+ K +R++ LR R DA++VG NT+ D+P LT R G G P+R
Sbjct: 162 GKIATAGGESQWITGKAAREQGHWLRDRVDAILVGVNTILADDPSLTTRLPEGRGKDPVR 221
Query: 281 IVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-------EFDIL 332
IV+ P A L S A T++ T A + + L + G EV+ D++
Sbjct: 222 IVVDSLARTPTAAKVLLQESAAHTMIATTEAAPVERRASLMAAGAEVLVVPGPGPRVDLV 281
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ME ++ IL E GG L SA+++G++ KV F+APKIIGG +AP + G
Sbjct: 282 K---LMELLGEKQITQILIEGGGKLNGSALAAGIVDKVVWFIAPKIIGGDSAPGAIRGDG 338
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGF 419
+ + A L D+ + + D +G+
Sbjct: 339 VQALKDATQLYDVSVQCLEGDFAFTGY 365
>gi|422343300|ref|ZP_16424228.1| riboflavin biosynthesis protein RibD [Selenomonas noxia F0398]
gi|355378607|gb|EHG25787.1| riboflavin biosynthesis protein RibD [Selenomonas noxia F0398]
Length = 370
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 202/397 (50%), Gaps = 36/397 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
RA D +Y+R A +A+ + G TSP+P G LI G V G+ A G AE+ A+
Sbjct: 5 RALDESYMREALRLAEFARGRTSPNPLVGALI-VRDGVVVANGWHRAAGEPHAEIHALRM 63
Query: 102 GGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGA Y+ +EP HG A++ AG+ RVVV + +P + G+ + L +
Sbjct: 64 AGDLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + + +EAR+ N + T++ PF K AMTLD
Sbjct: 124 GIEV------VTGVLEDEARRQ----NETFLKWITTKRPFVTLKTAMTLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GKIA+ +G +AWI+ +++R RV + R DA+++G T+ D+P LTAR GH P
Sbjct: 164 --GKIASRTGTSAWITGESARMRVHEYRDAYDAILIGIGTLLVDDPSLTARLPDRPGHHP 221
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRD 336
+RIVL P A L APT++ A K L + G EVV + ++
Sbjct: 222 LRIVLDSEARTPISAKLVTDGAAPTVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGC 281
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++++ +R S+ E G S ++ G KV AF+AP ++GG APTPV G +
Sbjct: 282 LLDWLGERECTSLFVEGGAEANWSFLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDDP 341
Query: 397 SQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSE 433
AL L D+ EQ+G D+L++G+ P+IPSE
Sbjct: 342 QTALRLGDVTVEQIGMDLLVTGY--------PIIPSE 370
>gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
audaxviator MP104C]
gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
audaxviator MP104C]
Length = 372
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 193/382 (50%), Gaps = 31/382 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A D+A ++ G TSP+P G ++ G++ G GY G AE+ A+ G
Sbjct: 2 DQEYMRMALDLAVRARGRTSPNPLVGAVV-VRDGEIVGRGYHARAGLPHAEIVALAQAGE 60
Query: 105 FCRGATAYLNMEPGDCHGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG+T Y+++EP CH T A++ AG+ RVV +R+P + G+ + LR G+
Sbjct: 61 AARGSTLYVSLEPC-CHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGV 119
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ED+ R +N I T+ PF K A++LD
Sbjct: 120 EVT---EDVL-------RDEAARLNEIFIKYITTGRPFVALKVAVSLD------------ 157
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GKIA +G + WI+ +R+ LR DA++VG TV +D+P LT R GGG P+RI
Sbjct: 158 GKIATRTGDSRWITGGPAREYAHRLRDTYDALLVGRGTVVKDDPSLTTRLPGGGRDPVRI 217
Query: 282 VLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDV 337
VL +PE + L S AP IV A R L SRGV+VV ++ +
Sbjct: 218 VLDSLARIPESSRVLSGESTAPVIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ R S++ E G T+ AS + + + K+ FVAPKI+GG AP V+ G+ +S
Sbjct: 278 LRELAAREITSVMVEGGATVHASFLEARFVDKLHWFVAPKIVGGVEAPGAVAGRGVGRIS 337
Query: 398 QALDLIDICYEQVGPDMLISGF 419
+A+ L + ++G D+ I G+
Sbjct: 338 EAVGLERVRRIELGNDLCIEGY 359
>gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus pumilus SAFR-032]
gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus pumilus SAFR-032]
Length = 363
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 190/376 (50%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A + A G TSP+P G +I ++ G G G AE+ A++ G +
Sbjct: 7 YMNLALENARAMKGQTSPNPLVGAVIVREN-EIVGVGAHMKAGEPHAEIHALKMAGDKAK 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG ALV+AG+ VVV +P + G+ + L+ G+QV
Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I + +L+N H T + PF K +TLD GKIA
Sbjct: 124 --------ITGVLEQESILMNEVFNHFITKKTPFVTLKAGITLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+++ + WI+S+TSR +R +DA++VG TV D+P LTAR G+ P+RIVL
Sbjct: 164 SATSDSKWITSETSRYDAHHIRSINDAILVGAQTVIHDDPSLTARIPNGNHPIRIVLDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVMEYFHD 343
L+ P A + APT + T + A + + L + GV V D + ++V++ +
Sbjct: 224 LSTPLTAKIVTDQMAPTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+ S++ E GG + AS + L+ K+ ++APK+IGG+ +P+ G+ MS A++L
Sbjct: 284 KNVSSLMIEGGGQINASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELD 343
Query: 404 DICYEQVGPDMLISGF 419
+ E +G D+ I+G+
Sbjct: 344 QLSVETLGKDIKITGY 359
>gi|418038109|ref|ZP_12676458.1| hypothetical protein LLCRE1631_01265 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354693787|gb|EHE93520.1| hypothetical protein LLCRE1631_01265 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 355
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 189/372 (50%), Gaps = 30/372 (8%)
Query: 55 IADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLN 114
+A K G +P+P G LI G++ G+GY G AE+ A + GA Y+
Sbjct: 7 LAKKGGGNVNPNPQVGALI-VKEGRIIGQGYHEKYGKAHAEINAFKDCNESPEGAMLYVT 65
Query: 115 MEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQS 173
+EP G A+++ GI RVV+G +P + G+ ++A+R G++V +
Sbjct: 66 LEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEVSL------- 118
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAA 233
++E K C +N + + +P+ + KYAMTLD GKIA S+G +
Sbjct: 119 NVLE---KECEELNKIFFYYVSQGLPYVMMKYAMTLD------------GKIATSAGQSK 163
Query: 234 WISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEA 293
WI+ + +R +V R R A+++G T+ D+P+L+ R G P+RI+ L P +
Sbjct: 164 WITGEIARQKVHQDRSRFMAIMIGVETLIFDDPQLSVRLENGKNPIRIICDTHLRSPLAS 223
Query: 294 NLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL----NSRDVMEYFHDRGYLS 348
+ ++ PTI+ T K +L + G E++ L N +++ + ++G S
Sbjct: 224 KIVSTATEIPTIIATAESDPEKQAPFLKA-GCEIILVSCLEGRLNLKELTKKLGEKGIDS 282
Query: 349 ILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE 408
I+ E GGTL ASA+ +G++ KV ++A KI GGK AP+PV G+ + +QA L
Sbjct: 283 IILEGGGTLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQIT 342
Query: 409 QVGPDMLISGFL 420
+G D+L+ L
Sbjct: 343 YLGEDILLESEL 354
>gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
Length = 370
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 201/397 (50%), Gaps = 36/397 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
RA D +Y+R A +A+ + G TSP+P G LI G V G+ A G AE+ A+
Sbjct: 5 RALDESYMREALRLAEFARGRTSPNPLVGALI-VRDGVVVANGWHRAAGEPHAEIHALRM 63
Query: 102 GGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGA Y+ +EP HG A++ AG+ RVVV + +P + G+ + L +
Sbjct: 64 AGDLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + + +EAR+ N + T++ PF K AMTLD
Sbjct: 124 GIEV------VTGVLEDEARRQ----NETFLKWITTKRPFVTLKTAMTLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTP 278
GKIA+ +G +AWI+ +++R RV + R DA+++G T+ D+P LTAR GH P
Sbjct: 164 --GKIASRTGASAWITGESARMRVHEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHP 221
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRD 336
+RIVL P A L APT++ A K L + G EVV + ++
Sbjct: 222 LRIVLDSEARTPISAKLVTDGAAPTVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGC 281
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++++ +R S+ E G S ++ G KV AF+AP ++GG APTPV G
Sbjct: 282 LLDWLGERECTSLFVEGGAEANWSFLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSP 341
Query: 397 SQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSE 433
AL L D+ EQ+G D+L++G+ P+IPSE
Sbjct: 342 QTALRLGDVTVEQIGMDLLVTGY--------PIIPSE 370
>gi|197119395|ref|YP_002139822.1| bifunctional
2,
5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase/5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter bemidjiensis Bem]
gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter bemidjiensis Bem]
Length = 369
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 31/378 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
+R A A K G T+P+P GC+I G+V G G+ GT AEV A++A G
Sbjct: 8 MMRLALAEARKGIGKTAPNPAVGCVI-VRNGEVVGTGWHKKAGTPHAEVHALKAAGDKAA 66
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA AY+ +EP G AL++A + RV V + +P + G+ ++ L+ G+ V V
Sbjct: 67 GADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDAGIAVEV 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+R+ +N P I +++P+ V K A+TLD GK A
Sbjct: 127 ------GLLKEESRE----LNLPFIKWIQTKLPYVVLKSALTLD------------GKSA 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+SG + W++S +R V LRGR DA++VG TV +D+P LT R GG P+R+++ T
Sbjct: 165 TASGDSKWVTSDRARREVHRLRGRLDAIMVGVGTVVKDDPLLTCRVPGGKDPLRVIVDST 224
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYF 341
L +P A + V S A T++ T K + L + GVE++ + R D+ E
Sbjct: 225 LRIPLHAAILGVKSKAETVIATCSCDHAKME-ALKAHGVEILTCCESDGRVDLADLFEKL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
RG S+L E G LA +A+ +GLI K F+APK++GG E G M+ A+
Sbjct: 284 GARGVQSVLLEGGSHLAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGE-GATLMADAIR 342
Query: 402 LIDICYEQVGPDMLISGF 419
L + ++VG D+L+ G
Sbjct: 343 LEQVRVKRVGVDLLVEGV 360
>gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 361
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE A+
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAILHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ + +R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGELARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GVEV+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 403
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 196/395 (49%), Gaps = 31/395 (7%)
Query: 28 SLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
+++ + P F K D Y+ A +A+K+ G+TSP+P GC+I + G + EGY
Sbjct: 25 AIILSLRPQFIKM-HMTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKN-GNIIAEGYHQ 82
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPL 146
G+ AE A+ GATAY+ +EP HG S L ++ GI +V +G R+P
Sbjct: 83 KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPN 142
Query: 147 QHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYA 206
+ G+ LR+ G++V ED R C +N H ++ P+ + KY
Sbjct: 143 PLVSGKGAAQLRAAGIEVV---EDFM-------RTECDALNPIFFHYIQTKRPYVLLKYG 192
Query: 207 MTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNP 266
MT D GKIA +G++ WI+ + +R V R A++VG TV D+P
Sbjct: 193 MTAD------------GKIATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDP 240
Query: 267 RLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVE 325
L +R P+RIV L P ++ L + TI+ T +K +Y A GVE
Sbjct: 241 MLNSRMENAKQPVRIVCDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTAC-GVE 299
Query: 326 VVEFDILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
++ + R D+++ + G S+L E G L S + GL+++V ++APK+IGG
Sbjct: 300 ILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGG 359
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
K A TP+ G+ E++QA+ L E +G D+L+
Sbjct: 360 KAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILL 394
>gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
D16]
gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
D16]
Length = 368
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 192/379 (50%), Gaps = 30/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A + G+TSP+P G ++ G++ G+G+ G AE +A++
Sbjct: 3 DTDYMNLALELARRGMGWTSPNPMVGAVLVKD-GEIIGQGWHTRYGELHAEREALKNCTG 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G T Y+ +EP CH A++ AGITRVVVG +P + G+ + LR G+
Sbjct: 62 SPAGTTLYVTLEPC-CHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV ++ + ++A C +N H T+R P+ V KYAMT+D
Sbjct: 121 QV-------ETGVCKQA---CDALNQVFFHFITTRRPYVVLKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + W++ +T+R RV + R R A++ G TV D+P LT R GG P+R++
Sbjct: 159 GKIATRTGASKWVTGETARKRVHEDRHRYRAILAGVGTVLADDPLLTCRMEGGRNPIRVI 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGAR-RKFQKYLASRGVEVV--EFDILNSRDVM 338
L P E+ + + + PTI+ T R+F A V V+ ++ +M
Sbjct: 219 CDTHLRTPLESQIVRTAQEVPTILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ S+L E GGTL SA+ GL+ KV A++APK+ GG A +PV LG+ Q
Sbjct: 279 DRLGAENIDSVLLEGGGTLNWSALEQGLVQKVQAYIAPKLFGGGAAKSPVEGLGVEIPDQ 338
Query: 399 ALDLIDICYEQVGPDMLIS 417
A+ LI +G D L+
Sbjct: 339 AVRLIHTTITPLGDDFLLE 357
>gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM
2246]
Length = 355
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 191/374 (51%), Gaps = 29/374 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A +A + G P+P G ++ TGK GEG+ G AEV A++A G+ RG
Sbjct: 1 MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
T + +EP CH T A+++AG+ RVV + +P + G + LR+ G+
Sbjct: 61 GTLLVTLEP-CCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGV---- 115
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
D+Q + E ++ +NAP + ++ P+ K+AMTLD GK+A
Sbjct: 116 ---DVQVGLCEADARA---LNAPYLKLLSTGRPWVHAKWAMTLD------------GKLA 157
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
A +G + WIS SR RV +LRGR DA++VG TV D+P LTAR G P R+VLT +
Sbjct: 158 ARTGDSKWISGAESRRRVHELRGRLDAILVGRGTVVADDPLLTARPAGVRVPARVVLTAS 217
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
LP L + +AP +V T K + A+ G EVV F L V+ R
Sbjct: 218 GELPAACQLRATAREAPVLVYTANPG--KLGGW-AADGAEVVGFGELTLDAVLADLGRRR 274
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
+ ++L E G L +A + I + F+APK++GG A TPV G M++AL L +
Sbjct: 275 FTNVLLEGGAGLLGAARDADAIDEFHVFIAPKVVGGSAALTPVGGTGAARMAEALTLEGV 334
Query: 406 CYEQVGPDMLISGF 419
+E G D+ + GF
Sbjct: 335 TFEPSGADVYVHGF 348
>gi|452745527|ref|ZP_21945361.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype 6
str. H23]
gi|452086402|gb|EME02791.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype 6
str. H23]
Length = 395
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 196/395 (49%), Gaps = 31/395 (7%)
Query: 28 SLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
+++ + P F K D Y+ A +A+K+ G+TSP+P GC+I + G + EGY
Sbjct: 17 AIILSLRPQFIKMYMT-DVQYMAYAITLAEKARGWTSPNPLVGCVIVKN-GNIIAEGYHQ 74
Query: 88 AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPL 146
G+ AE A+ GATAY+ +EP HG S L ++ GI +V +G R+P
Sbjct: 75 KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPN 134
Query: 147 QHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYA 206
+ G+ LR+ G++V ED R C +N H ++ P+ + KY
Sbjct: 135 PLVSGKGAAQLRAAGIEVV---EDFM-------RTECDALNPIFFHYIQTKRPYVLLKYG 184
Query: 207 MTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNP 266
MT D GKIA +G++ WI+ + +R V R A++VG TV D+P
Sbjct: 185 MTAD------------GKIATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDP 232
Query: 267 RLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVE 325
L +R P+RIV L P ++ L + TI+ T +K +Y A GVE
Sbjct: 233 MLNSRMENAKQPVRIVCDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTAC-GVE 291
Query: 326 VVEFDILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
++ + R D+++ + G S+L E G L S + GL+++V ++APK+IGG
Sbjct: 292 ILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGG 351
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
K A TP+ G+ E++QA+ L E +G D+L+
Sbjct: 352 KAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILL 386
>gi|373454828|ref|ZP_09546691.1| riboflavin biosynthesis protein RibD [Dialister succinatiphilus YIT
11850]
gi|371935524|gb|EHO63270.1| riboflavin biosynthesis protein RibD [Dialister succinatiphilus YIT
11850]
Length = 399
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 192/384 (50%), Gaps = 30/384 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED ++ RA ++A + G P+P G +I G++ GEG+ G AEV A
Sbjct: 5 EDRKFMARALELAVRGMGHARPNPMVGAVIVKD-GRIIGEGWHEKFGGPHAEVNAFAHCT 63
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP +G + L+ + I RVV + +P + G+ +R LR G+
Sbjct: 64 EDPSGATLYVTLEPCSHYGKTPPCADLIIEKDIDRVVTAMVDPNPLVSGKGIRRLREAGI 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + +EARK +N + T PF ++K AM+LD
Sbjct: 124 FVTV------GVMEKEARK----LNEVFLKYVTEHKPFVLYKAAMSLD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK A +G + WISS+ SR+ V LRG ++VG TV DNP LTAR G P+RI+
Sbjct: 162 GKTACHTGDSKWISSEDSREEVHVLRGCYKGIMVGAGTVMADNPLLTARTEGLDDPVRII 221
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD-----ILNSRDV 337
+ L++P +A ++ IV+T + K ++ L GV+++ D ++
Sbjct: 222 VDGNLSVPLKARVFQ-EGGDVIVLTTTSSDEKKREELTKLGVDIIMTDSDQKGKVDLASA 280
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M +G IL E G +LAASA +G++ KV + APKIIGG AP + +G M+
Sbjct: 281 MTGLALKGIDGILLEGGASLAASAFEAGIVDKVRIYEAPKIIGGVGAPGLIGGIGASSMA 340
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
+A+ L D+ E G D++I ++
Sbjct: 341 EAVKLRDMSTETCGGDLVIEAYVD 364
>gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
Length = 368
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 194/380 (51%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y+ A ++A K++G T +P GC++ G++ G G +GT AEV A++ G
Sbjct: 6 DSYYMSLALELAAKASGQTGINPVVGCVVVKD-GRIIGVGTHLKRGTGHAEVHALQMAGD 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G ++ A RVVV +P + G+ + LR +G++
Sbjct: 65 EAEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE +S +N TSR+P+ K A TLD G
Sbjct: 125 VEV-------GLLEEQSRS---MNEKFNKYITSRLPYVTLKTASTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +G + WI+ T+R++V LR + +A++VG T+ D+P+LT R P+RI+
Sbjct: 163 KIASHTGDSRWITGSTAREQVHTLRHQHEAIMVGIGTLLADDPQLTTRAAVPAIHPVRII 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+ L LP +A + A TIV+ A ++ L GVEV+ + E
Sbjct: 223 VDSQLRLPLDARVVTDGLARTIVLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMR 282
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
G L SIL E GG L + + +GLI K+ ++A KIIGG ++P + G +MS+A
Sbjct: 283 KLGELEIGSILLEGGGKLNGAMLEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEA 342
Query: 400 LDLIDICYEQVGPDMLISGF 419
++L + E G D+ ISG+
Sbjct: 343 IELDHVKVEMAGEDICISGY 362
>gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
Length = 366
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 197/380 (51%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A D+A+++ G T +P GC++ G +AG G +GT AEV A+ G
Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVVVKD-GALAGVGTHLERGTPHAEVHALNMAGP 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G S L+ G+ RVVV +P + G+ ++ LR+ G++
Sbjct: 65 KAAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ I+++ L +N + T+ PF K A TLD G
Sbjct: 125 V-------ETGILKD---RALRLNEAFVKFITTGRPFVTLKTASTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +G + WIS++ SR+ V LR R ++VG +TV DNP LT R G G P+RI+
Sbjct: 163 KIASKTGDSKWISNEKSRELVHTLRHRHQGIMVGVSTVIADNPSLTTRLGVKGLHPVRII 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
+ +L +P ++++ APT ++T A + L GV+V+ ++ + +
Sbjct: 223 VDSSLRIPLDSHVVLDGLAPTWILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALL 282
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G SIL E GGTL S + L+ ++ F+APKIIGG +AP G +M+QA
Sbjct: 283 QLGQKGIASILLEGGGTLNGSMLEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQA 342
Query: 400 LDLIDICYEQVGPDMLISGF 419
+ L + E++G ++ ++G
Sbjct: 343 ISLTGLETERLGDNIYVTGI 362
>gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii
CaD3]
gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chlorobium chlorochromatii CaD3]
Length = 366
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 35/387 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-- 101
E Y++RA ++A + AG SP+P G L+ G++ GEG+ G AEV A+ A
Sbjct: 5 EHTFYMQRALELALRGAGRVSPNPMVGALL-VQEGEIIGEGWHERYGEAHAEVNAIAAVT 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG-ITRVVVGIRNPLQHLRGQAVRALRSQ 160
++ R AT Y+ +EP G S L+ A I RVVVG R+P + G+ + LR+
Sbjct: 64 NEAWLREATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAKLRAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKS-CLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V IE ++ CL N I T +PF K A TLD
Sbjct: 124 GIEV-----------IEGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLD--------- 163
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GK+A +G + WI+ + +R V LR DAV+VGG T DN +LT R G P+
Sbjct: 164 ---GKLATVTGASRWITGEEARAEVHRLRSVYDAVLVGGATALADNSQLTVRQANGRNPL 220
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRK-----FQKYLASRGVEVVEFDILNS 334
R+VL ++L LP E+ +++ +APT++ T + QK S + L
Sbjct: 221 RVVLDRSLQLPLESLIFN-HEAPTLLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQL 279
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
R+V+E H R LS+L E G L A+ + +G + K+ F+APK+ GG + + + LG+
Sbjct: 280 REVLEELHHRHILSVLVESGSRLGAALLQAGFVDKLLIFIAPKLFGG-DGLSAFAPLGVT 338
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
+A+ L G D+L+ ++
Sbjct: 339 VPDEAIALRFELPRFFGKDLLLEAYIN 365
>gi|390454144|ref|ZP_10239672.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus peoriae KCTC 3763]
Length = 369
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 184/379 (48%), Gaps = 29/379 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A + A + G T P+P G +I + G++ G G G AE+ A+ G R
Sbjct: 10 YMRLALENARSAKGQTEPNPLVGSVI-VNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAR 68
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG A+VQAGI RVV+ +P + G+ V+ L+ G++V
Sbjct: 69 GATIYVTLEPCSHHGRTGPCAEAIVQAGIRRVVIAALDPNPLVSGRGVQILKDVGIEV-- 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+ + + +N S+ PF K A+TLD GKIA
Sbjct: 127 --------IVGVCEQESIRMNEVFNRYIVSKRPFITIKSAVTLD------------GKIA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S+ +R+ V LR ++VG TV DNP+LT R G P+RI+L T
Sbjct: 167 TRTSESKWITSEAAREDVHRLRHEHVGILVGVQTVIHDNPQLTTRLPEGRNPIRIILDST 226
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDVMEYF 341
L +P +A + +APT + T R + L GV+V D +N +++
Sbjct: 227 LRIPLDARVITDGEAPTWIFTGRAYDEGKRSQLEQLGVKVYPTQNESSDRVNLPQMLDIL 286
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S+ E G + AS + GL K+ ++APK++GG+ AP + G+ MS A+
Sbjct: 287 GAAEVSSVFVEGGAEVNASFVQQGLADKLVLYIAPKLVGGRAAPGFLGGEGVSAMSDAVG 346
Query: 402 LIDICYEQVGPDMLISGFL 420
L D+ QVG D+ I G+
Sbjct: 347 LQDLSVTQVGVDLKIEGYF 365
>gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
WAL-14163]
gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
WAL-14163]
Length = 370
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 186/380 (48%), Gaps = 33/380 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A K G +P+P G +I G+V G GY G AE A+ +
Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKE-GRVIGRGYHQKYGGPHAEQNALSSCTE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP CH V A++QA I+RVVVG +P + G+ +R LR G+
Sbjct: 63 PPQGAVMYVTLEPC-CHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ED+ R+ C +N H + PF V KYAMT+D
Sbjct: 122 SVT---EDI-------LREECAKLNEVFFHYIRTEHPFVVMKYAMTMD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GKIAA +G + WI+ + +R V LR R A++ G TV D+P LT R GG P+RI
Sbjct: 160 GKIAAVTGESKWITGEAARHHVQKLRHRYTAIMAGVGTVISDDPLLTCRGVRGGKNPVRI 219
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RD 336
+ L P A + + APT++ T + Y + G V+ N R+
Sbjct: 220 ICDTRLRTPPAARVVATAGQAPTVIATCCDDPERHMVYQKA-GCSVLTVREKNGHVDLRE 278
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M +G SIL E GGTL +A+ SG++ K A++APK++GG+ + TPV G +
Sbjct: 279 LMRKLGKQGIDSILLEGGGTLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSP 338
Query: 397 SQALDLIDICYEQVGPDMLI 416
+ L + ++G D LI
Sbjct: 339 GDGIVLKNSRIIRLGEDFLI 358
>gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
DSM 14796]
gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
DSM 14796]
Length = 372
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 201/381 (52%), Gaps = 31/381 (8%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
+++++A D+A +TSP+P GC++ K+ +GY A G AE A++
Sbjct: 15 SFMKKALDLALNGKYYTSPNPMVGCIVVKDK-KIISQGYHRAYGEPHAEANALKPKYIDF 73
Query: 107 RGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GA Y+ +EP +G + S ++ +GI RV + +P + G++V L+ G++V+
Sbjct: 74 SGADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIEVY 133
Query: 166 VLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+ I+E EAR +N +P+ ++K AMTLD GK
Sbjct: 134 -------TGILEKEAR----FINRHFFKAMEKSMPWLIYKCAMTLD------------GK 170
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM-RIVL 283
A + + +ISS SR V +LR DA++VG T D+P L R G + R+++
Sbjct: 171 TADHNFKSKYISSVKSRKYVHELRAECDAIIVGYRTAIFDDPLLNIRLKGVQKKVNRVII 230
Query: 284 TQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYF 341
LP++ +++ ++ TI+V Q+G R K + S+GVEV+E + N D+M+
Sbjct: 231 DPKAALPKDLMVFNTPNEGHTILVIQKGFRNKVTDQIESQGVEVLEVEEKNFYVDLMKEL 290
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ + IL E GG+LA + + LI ++ F+APKI+GGKN+PTP S G E+ Q
Sbjct: 291 FKKNLIKILLEGGGSLACHMLKNRLIDELNFFIAPKILGGKNSPTPFSGAGF-EIDQNTV 349
Query: 402 LID-ICYEQVGPDMLISGFLQ 421
++D + +++G D+LI+ ++
Sbjct: 350 VLDSLKTKKIGTDILITSLVK 370
>gi|374385991|ref|ZP_09643492.1| riboflavin biosynthesis protein RibD [Odoribacter laneus YIT 12061]
gi|373224525|gb|EHP46863.1| riboflavin biosynthesis protein RibD [Odoribacter laneus YIT 12061]
Length = 370
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 194/383 (50%), Gaps = 31/383 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
AED ++RRA ++AD+ GF +P+P G ++ G++ GEG+ G AE A +
Sbjct: 8 AEDCRFMRRAMELADRGKGFVNPNPLVGAVVVKE-GRIIGEGWHEFYGGLHAERNAFKNC 66
Query: 103 GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
RGA Y+ +EP CH T +++ GI RVVVG+ +P + G+ + LR+
Sbjct: 67 TEDTRGAALYVTLEPC-CHYGKTPPCTDIVIEKGIARVVVGLTDPNPLVAGKGIEKLRNA 125
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++ +++ E N + T++ P+ K AMTLD
Sbjct: 126 GIEVVV---GIEQELLREQ-------NRIFLKYITTKQPWVALKTAMTLD---------- 165
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPM 279
GKIA + G + W++++ +R RV +R ++VG TVR D+P L R H P+
Sbjct: 166 --GKIATAEGDSKWVTAEAARLRVHQMRSEYRGILVGAGTVRADDPLLNCRLEDKHRQPV 223
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
RIV+ ++ ++ L + ++V A + + L GV + + + +
Sbjct: 224 RIVVCTKADIALDSQLVRTAREYPLIVAYTAAEEEVLEELRKAGVRTLLCARKEGKVALK 283
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
D++ G S+L E GG L + + L+ +VFAF+APK+IGG+ A TPV G
Sbjct: 284 DMLNKLGGLGIDSVLLEGGGELNYTFLQENLVDEVFAFIAPKLIGGREAKTPVEGKGFGR 343
Query: 396 MSQALDLIDICYEQVGPDMLISG 418
MS A+ L D+ E++G D LI G
Sbjct: 344 MSDAVVLQDLQAEKIGMDFLIRG 366
>gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
14684]
gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
14684]
Length = 374
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 199/386 (51%), Gaps = 31/386 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG- 103
D ++ RA ++A + G SP+P G +I T G+V EG+ G AEV+A+ A G
Sbjct: 9 DRLHLARALELAAQGRGRVSPNPMVGAVI-TRDGEVVAEGWHSEYGAPHAEVEAIAAAGD 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ GAT Y+++EP CH A++ AGI RVVV +P + G+ + LR +G
Sbjct: 68 ADLSGATLYVSLEPC-CHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILRDEG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V V G +L ++ AR L+N P +A + P+ +FK AMTLD
Sbjct: 127 VDVAVAGGELAAR----AR----LLNQPFRKQARTGRPWVLFKSAMTLD----------- 167
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK+A +G + WISS SR+R R DAV VG T D+P+LTAR G P R
Sbjct: 168 -GKVATRAGDSKWISSTQSRERAHHWRAECDAVAVGIGTALADDPQLTARIPGVARQPRR 226
Query: 281 IVLTQTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN--SRDV 337
+V +P ++ L +D P VV R A R L + G EV+ N +R V
Sbjct: 227 VVFDSLARVPLDSQLVQAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVV 286
Query: 338 --MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ G SIL E G LA + + +G I ++ F+AP ++GG+ A P+ G+
Sbjct: 287 SALDQLGAVGVASILLEGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLEGEGVET 346
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+S+AL + + ++VG D+L+S L+
Sbjct: 347 ISEALRALTLDCDRVGEDLLVSARLK 372
>gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlorobium phaeobacteroides DSM 266]
gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlorobium phaeobacteroides DSM 266]
Length = 366
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 193/363 (53%), Gaps = 33/363 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS--F 105
Y+ R ++A + +G SP+P G +I G++ GEGY G AEV A+ + G+
Sbjct: 9 YMNRCFELALQGSGMVSPNPMVGSVI-VHNGEIVGEGYHERFGGPHAEVHAIASVGNAEV 67
Query: 106 CRGATAYLNMEPGDCHGDHTAVSALVQAG-ITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
+ +T Y+N+EP G + L+ A I RVV+G R+P + + G+ + L + G+QV
Sbjct: 68 LQNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAAGVQV 127
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+ ++ EA K +N I T +PF K A TLD GK
Sbjct: 128 ------TEGVLMPEALK----LNEAFIKSCTVGLPFVTLKLAQTLD------------GK 165
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IA + G + WI+ + SR +V LR DAVVVG TV+ D+ LT RH G P+R++L
Sbjct: 166 IATAGGASRWITGEESRTQVHRLRCNCDAVVVGEATVQADDSELTVRHCAGRNPLRVLLD 225
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQ-KYLASRGVEVVEFDI----LNSRDVME 339
+ L+L +A ++ ++A T+V T R + + + L RGVEV+ D L+ + +++
Sbjct: 226 RRLSLFADARIFS-TEAATLVFTTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQ 284
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
H RG +S+L E G L+AS + + L+ K+ F+AP++ GG + + + LG+ QA
Sbjct: 285 ELHRRGIISLLVEGGSRLSASFLGAALVDKLLVFIAPRLFGG-DGLSAFAPLGVELPDQA 343
Query: 400 LDL 402
+ L
Sbjct: 344 VQL 346
>gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Coprococcus catus GD/7]
Length = 371
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 201/385 (52%), Gaps = 30/385 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV-EAG 102
ED Y++ A D+A G+T+P+P G +I G+V +GY + G AEV+A +AG
Sbjct: 7 EDLRYMQMALDMAKLGRGYTNPNPMVGAVIVKD-GQVIAKGYHHCCGQGHAEVEAFKDAG 65
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
GAT Y+ +EP +G +++ I RVVVG +P + G+ + +R+ G
Sbjct: 66 NQDVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEKIRNAG 125
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + EE+ K +N + ++ PF ++K AM+LD
Sbjct: 126 IEVTT------GVLAEESIK----LNEIFMKYIVNKEPFVLYKSAMSLD----------- 164
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA SG + WIS + SR V +LR + A++VG TV D+P L R G P+R+
Sbjct: 165 -GKIATVSGESQWISCEASRKEVHELRHQYMAIMVGSQTVLDDDPMLNCRLIEGKDPIRV 223
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVME 339
V+ +L +P A L + D TIV A K K L + GVEV+ + + D+ +
Sbjct: 224 VVDSSLRIPMTARLVKTARDIRTIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKK 283
Query: 340 YFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ G + SIL E G LAA+A +G+I KV ++APKIIGGK + TPV G+ +
Sbjct: 284 LTEELGRMQIDSILLEGGAALAAAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEHL 343
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
S A L DI +G D+ I+G+++
Sbjct: 344 SDAWQLKDITARNIGNDICITGYIR 368
>gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
25976]
gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
25976]
Length = 361
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE A+
Sbjct: 3 DLDYMRRAIVLAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAILHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
ATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + +E C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKDE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA S+G + WI+ +++R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATSTGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNVKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GVEV+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQFRPP-GVEVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ D S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGDMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|444917686|ref|ZP_21237778.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cystobacter
fuscus DSM 2262]
gi|444710737|gb|ELW51704.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cystobacter
fuscus DSM 2262]
Length = 391
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 199/392 (50%), Gaps = 34/392 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY GT AEV A+
Sbjct: 23 FDRAVAEFFMRLALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGYHRRAGTAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA G+ RGA Y +EP D +G S AL+ AG+ RV+ +P + G+ V LR
Sbjct: 82 EAAGAKARGADLYTTLEPCDHYGRTPPCSQALIDAGVRRVITASSDPNPKVNGKGVARLR 141
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V L + +EA + +N P + +PF K A+TLD
Sbjct: 142 RAGVEV------LTGVLKDEADQ----LNRPFFKAMRTGLPFVTLKAAVTLD-------- 183
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ + +R V LR + D ++VG T RRDNP+LT R GGG
Sbjct: 184 ----GKLATATGDSRWVTGEQARAWVHRLRDQVDVILVGATTARRDNPQLTTRLPGGGGK 239
Query: 277 TPMRIVLTQTLNLPEEANLW-DVSDAPTIVVT-QRGARRKFQKYLASRGVEVVEFDILNS 334
P+R+V+ L LP ++ S A T+V T + + RK ++ LA+ G +V +
Sbjct: 240 DPVRVVVDSHLRLPSTLQVFTQRSPARTVVATLEEPSARKAKRLLAT-GTDVWQLPEKQG 298
Query: 335 RDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
R +E R G +L E G + S + L ++ FVAPK+IGG+ S
Sbjct: 299 RVDLEALMRRLAREGLNHVLVEGGAEMYGSFLREELADELLLFVAPKLIGGEGLSWSGS- 357
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
LG+ +M++AL + + EQVG D+L+ L P
Sbjct: 358 LGVKQMARALTVGALSMEQVGTDLLLRARLDP 389
>gi|415885142|ref|ZP_11547070.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus MGA3]
gi|387590811|gb|EIJ83130.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus MGA3]
Length = 371
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 186/378 (49%), Gaps = 29/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A + G TSP+P+ G ++ + G++ G G GT AEV A+ G
Sbjct: 3 DHEYMKLALSMARAAVGQTSPNPSVGAVVVKN-GEILGMGAHLKAGTPHAEVHAIRTAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA Y+ +EP +G + L+ +GI RVVV +P + G V+ LR G++
Sbjct: 62 KARGADLYVTLEPCSHYGKTPPCTELIISSGIKRVVVATLDPNPLVAGTGVKQLRQAGIE 121
Query: 164 VHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V +G++ +I N P H + P+ K A+TLD
Sbjct: 122 VEVGVGKNEADQI-----------NEPFFHYIQTGKPYVTLKAAVTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GK A +G + WI+S +R V LR DA++VG TV DNP LT R GG P+RI
Sbjct: 159 GKTATKTGDSKWITSAQARSDVHQLRHEHDAILVGIQTVLNDNPLLTTRLPRGGKNPIRI 218
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVME 339
+L L +P +AN+ A TIV+T R+ L GVEVV ++ +++
Sbjct: 219 ILDTHLRIPLDANVIKDKTAKTIVITGNEFDRQKADNLHELGVEVVPLSTAQIDINELLT 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
R +S+L E G + AS I + ++ +VAPK+IGG +A + G+ + A
Sbjct: 279 VLGKRQIMSVLVEGGSKVHASFIKARAFQQLIFYVAPKVIGGIDAIPAIGGEGLDFVRDA 338
Query: 400 LDLIDICYEQVGPDMLIS 417
L E++GPD+ I+
Sbjct: 339 EKLEFTSIERIGPDIKIT 356
>gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
Length = 363
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 191/376 (50%), Gaps = 32/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA ++A+ G+T+P+P GC+I GK+ EGY G AE A+
Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKD-GKIIAEGYHQRYGEWHAERNAILHCQEDLS 64
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP HG S L++ GI VV+G +P + G+ V LR G++V
Sbjct: 65 GATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEV-- 122
Query: 167 LGEDLQSKIIEEARKS-CLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
IE K+ C +N H ++ P+ + KYAMT D GKI
Sbjct: 123 ---------IENVMKAECDALNPIFFHYIQTKRPYVLMKYAMTAD------------GKI 161
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A ++G A WI+ + +R V R + A++VG +TV DNP L +R P+RIV
Sbjct: 162 ATATGEAKWITGEQARANVQCTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVCDS 221
Query: 286 TLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEY 340
L P E L + TI+ T +K ++ GVEV+ + R D+++
Sbjct: 222 RLRTPLECQLVQTAKTYRTIIATVSDDLQKIAQF-QPLGVEVLVCKAKDKRIDLADLLQK 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
D+G S+L E G +L SA+++G++++V ++APK++GG A TP+ G+ ++ A+
Sbjct: 281 LGDQGIDSLLLEGGSSLNFSALNAGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAV 340
Query: 401 DLIDICYEQVGPDMLI 416
L + Q+G D+LI
Sbjct: 341 QLKNAKIRQIGEDLLI 356
>gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
gi|6225948|sp|O66534.1|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
Length = 356
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 30/377 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R D Y++ A +A K G+T P+P G ++ GK+ G GY G AEV A+
Sbjct: 3 REIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKE-GKIVGLGYHEKAGKPHAEVMALGQ 61
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+ +EP G + A++++GI RVVV +P + G+ V LR+
Sbjct: 62 AGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V EEAR+ +N T P+ K+A TLD
Sbjct: 122 GIEVDV------GVCEEEARE----LNEDFFTYITQERPYITLKWAQTLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPM 279
GK+A +G + WI+SK SR LR + AV+VG NTV +D+P LT R P+
Sbjct: 162 --GKLATLTGSSKWITSKESRKVAHILRREATAVLVGVNTVIKDDPHLTVRFVPTEKQPV 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
RI+L L +P A + + +APTIV+T++ + + L +GV+V+ N +++++
Sbjct: 220 RIILDPELEVPLSAKVLNTEEAPTIVITKKENEK--AEKLKEKGVQVLILKGFNLKNILK 277
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ + ++ E G S + G ++ F+APKI+G + +LG+ + ++
Sbjct: 278 KLKELEIMHLMVEGGPRTLTSFLKEGFFDRIVVFIAPKIMG---EGLSIGDLGIRSIEES 334
Query: 400 LDLIDICYEQVGPDMLI 416
L + E +G D++I
Sbjct: 335 LKVRKKKVENLGEDLVI 351
>gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
20712]
gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
20712]
Length = 397
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 198/391 (50%), Gaps = 34/391 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ +D Y+ RA +AD+ G+ +P+P G +I G++ GEG+ G AE A
Sbjct: 20 YMETKDREYMNRARILADRGRGWVNPNPLVGAVIVKD-GRIIGEGWHERYGGLHAERNAF 78
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ GAT Y+ +EP CH T A+++ I RVVVG+ +P + G+ + L
Sbjct: 79 KQCTEDPAGATLYVTLEPC-CHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEML 137
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R G+ V E+ E+ R+ N + T+R P+ V K AMTLD
Sbjct: 138 RKAGIVVETGVEE------EKLREQ----NRVFLKYITTRRPWIVMKTAMTLD------- 180
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGH 276
GKIAA +G + W++ + SR +V ++R ++VG TV+ D+P L R G
Sbjct: 181 -----GKIAAYTGDSHWVTGEESRKKVQEMRSVLMGIMVGSGTVKADDPLLNCRLKGEVR 235
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVV--TQRGARRKFQKYLASRGVEVVEFDILNS 334
P+RI++ T + ++ L +D +V T R K + L +GVE + ++
Sbjct: 236 QPVRIIVDSTAAIATDSQLVRTADRYRTLVAHTSRADAGKLVQ-LQQKGVETILCPGCDN 294
Query: 335 RDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
R ++ + G S+L E GG L + + GL+ +V+AF+APK+IGGK+A TPV
Sbjct: 295 RVDLQALTTKLGQAGIDSVLLEGGGELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVEG 354
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G+ M +A+ L + E+VG D LI GF Q
Sbjct: 355 KGIAWMKEAIALQSVSIEKVGEDFLIKGFPQ 385
>gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
Length = 363
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 32/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA ++A+ G+T+P+P GC+I G + EGY G AE +A+
Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKD-GNIVAEGYHQRYGEWHAERKAILHCQEDLS 64
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP HG S L++ GI VV+G +P + G+ V LR G++V
Sbjct: 65 GATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEV-- 122
Query: 167 LGEDLQSKIIEEARKS-CLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
IE K+ C +N H ++ P+ + KYAMT D GKI
Sbjct: 123 ---------IENVMKAECDALNPIFFHYIQTKRPYVLMKYAMTAD------------GKI 161
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A ++G A WI+ + +R V R + A++VG +TV DNP L +R P+RIV
Sbjct: 162 ATATGEAKWITGEQARANVQCTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVCDS 221
Query: 286 TLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEY 340
L P E L + TI+ T +K ++ GVEV+ + R D+++
Sbjct: 222 RLRTPLECQLVQTAKTYRTIIATVSDDLQKIAQF-QPLGVEVLVCKAKDKRIDLADLLQK 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
D+G S+L E G +L SA+++G++++V ++APK++GG A TP+ G+ ++ A+
Sbjct: 281 LGDQGIDSLLLEGGSSLNFSALNAGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAV 340
Query: 401 DLIDICYEQVGPDMLI 416
L + Q+G D+LI
Sbjct: 341 QLKNAKIRQIGEDLLI 356
>gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 364
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 193/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATGTGESKWITGELARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GV+V+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQF-RPLGVDVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|392393798|ref|YP_006430400.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390524876|gb|AFM00607.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 365
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 190/364 (52%), Gaps = 30/364 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G TSP+P GC+I G + GEGY GT AEV A++A G
Sbjct: 4 DNHYMSRALELAALAMGRTSPNPLVGCVI-VKDGAIVGEGYHQKAGTPHAEVHALKAAGK 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP G AL++AGI RVVV + +P + GQ V LR G+Q
Sbjct: 63 HAQGATAYVTLEPCSHFGKTPPCADALIKAGIERVVVSMVDPNPLVGGQGVARLREAGIQ 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + E+ KS +N + + +PF ++K A+TLD G
Sbjct: 123 VDV-------GLKEKEAKS---LNKGFLKEIQTGLPFLLYKSALTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+++ SR V LR R D ++VG TV D+P L R G P+R+++
Sbjct: 161 KIATESGDSKWITNEASRAYVHQLRNRFDVIMVGSETVLHDDPALNCRVDEGRDPVRLIV 220
Query: 284 TQTLNLP-EEANLWDVSDAPTIVVTQRGA-RRKFQKYLASRGVEVVEFD---ILNSRDVM 338
L +P + A L AP I+ T A K + VEV ++D + R ++
Sbjct: 221 DGELKIPLQSAVLTSSCSAPCIIATSASAPLDKLNALQSIENVEVWKYDSPRYVPLRHLL 280
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
RG+ S+L E GG LA S + LI +V APK+IGGK P+P++ L + M+Q
Sbjct: 281 GDLVKRGWNSVLLEGGGGLAGSLLHDQLIDEVEFIYAPKLIGGK-GPSPLTGLNLPLMTQ 339
Query: 399 ALDL 402
A+ L
Sbjct: 340 AIPL 343
>gi|339442467|ref|YP_004708472.1| pyrimidine reductase, riboflavin biosynthesis [Clostridium sp.
SY8519]
gi|338901868|dbj|BAK47370.1| pyrimidine reductase, riboflavin biosynthesis [Clostridium sp.
SY8519]
Length = 360
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 191/379 (50%), Gaps = 32/379 (8%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGAT 110
RA +A + AG+TSP+P GC++ G++ EGY G AE A+ GA
Sbjct: 3 RAIRLARQGAGYTSPNPMVGCVV-VKDGRIISEGYHERCGEYHAERNALLRCREDPAGAD 61
Query: 111 AYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLG 168
Y+ +EP CH T +++ I V VG + + G+ V+ LR G+ V
Sbjct: 62 LYVTLEPC-CHHGKTPPCTEIILEKKIGHVYVGSMDSNPLVAGKGVQILRDHGIPV---- 116
Query: 169 EDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAAS 228
+ I+EE CL +N H T P+ KYAMTLD GKIA +
Sbjct: 117 ---TTGILEE---ECLKLNEVFYHFITHGTPYVAAKYAMTLD------------GKIACA 158
Query: 229 SGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLN 288
SG + W+++++SR V LR ++VG TV D+P L R G P+RIV L
Sbjct: 159 SGDSKWVTNESSRQDVQQLRKLYSGIMVGIGTVLADDPMLNCRIAEGADPVRIVCDSGLR 218
Query: 289 LPEEANLWDVS-DAPTIVVTQRGA---RRKFQKYLASRGVEVVEFDIL--NSRDVMEYFH 342
+P E+ L + + PTIV A +++ + L GVEV+ + +++M
Sbjct: 219 IPMESKLVQTAREIPTIVAAGADAINQKKEKAEQLTRAGVEVLCAGQTRPDLKELMRQLG 278
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
++ S+L E GGTL ASA +G++ KV+ ++A KI GGK+APTPV G+ M+ AL L
Sbjct: 279 EKKIDSVLIEGGGTLNASAFEAGIVRKVYVYIAGKIAGGKDAPTPVRGRGVERMADALAL 338
Query: 403 IDICYEQVGPDMLISGFLQ 421
D+ + D+ + G+L+
Sbjct: 339 SDLEVSLLDGDLRVVGYLK 357
>gi|389815190|ref|ZP_10206549.1| riboflavin biosynthesis protein ribD [Planococcus antarcticus DSM
14505]
gi|388466261|gb|EIM08568.1| riboflavin biosynthesis protein ribD [Planococcus antarcticus DSM
14505]
Length = 367
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 185/376 (49%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A G T P+P G +I ++ G G G AE+ A+ R
Sbjct: 7 YMDLALSNAKNLKGQTDPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAADMSR 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP G A++ AGI +VVV +P + G VR L G++V V
Sbjct: 66 GATIYVTLEPCSHFGRTGPCAQAIITAGIKKVVVATLDPNPLVSGNGVRMLEEAGIEVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EE+RK + N ++ + PF K A TLD GKIA
Sbjct: 126 SVRE------EESRKMNEVFNKFIV----DKTPFVTLKAASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
S + WI+S+ +R V LR + A++VG TV D+P LTAR G P+R+VL T
Sbjct: 164 THSLDSKWITSEEARLDVHLLRSQHMAILVGVGTVIEDDPELTARIPNGRNPLRLVLDST 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVMEYFHD 343
L +P ++ L A T + T R + +K L + G+ + E + ++ DV+ +
Sbjct: 224 LRIPLDSKLVTDGIADTWIFTSRNHTNEKRKALENLGISIYETNKDTQVDVFDVVRILGE 283
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+G S+ E GGT+ A+ + +GLI KV + APK++GGK APT V G+ M A++L
Sbjct: 284 KGISSLFIEGGGTINAAFLENGLIDKVVFYFAPKLVGGKLAPTFVEGTGIEWMKDAINLR 343
Query: 404 DICYEQVGPDMLISGF 419
D + ++G D +G+
Sbjct: 344 DGEFSKIGKDFKFTGY 359
>gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 364
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 193/378 (51%), Gaps = 30/378 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR G++
Sbjct: 62 DLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ + EE C +N H ++ P+ + KYAMT D G
Sbjct: 122 V------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ + +R RV R + A++VG +TV DNP L +R P+RIV
Sbjct: 160 KIATGTGESKWITGELARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVC 219
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
L P + L + + T++ T +K +++ GVEV+ N R D++
Sbjct: 220 DSQLRTPLDCQLVQTAKEYRTVIATVCDDLQKVEQF-RPLGVEVLVCKARNKRVDLQDLL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+ ++ Q
Sbjct: 279 QKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQ 338
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L E +G D+L+
Sbjct: 339 AVKLKLKSTELIGEDILL 356
>gi|350566242|ref|ZP_08934930.1| riboflavin biosynthesis protein RibD [Peptoniphilus indolicus ATCC
29427]
gi|348662967|gb|EGY79592.1| riboflavin biosynthesis protein RibD [Peptoniphilus indolicus ATCC
29427]
Length = 354
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 182/357 (50%), Gaps = 29/357 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA ++A+ GFT +P G ++ + K+ EGY + G AEV A+ G
Sbjct: 1 MKRALELAELGRGFTKTNPLVGAVVVKNN-KIIAEGYHHRFGDNHAEVDALNKVSKMAEG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G V +++ + RVVV I++P + + G+ + L+ +G+ V V
Sbjct: 60 ATMYVTLEPCSHYGKTPPCVDRIIKEKLKRVVVAIKDPDERVSGRGIEILKKEGIDVEV- 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
++EE K N + + + PF K+A TLD GKIA
Sbjct: 119 ------GMLEEEAK---FQNRVFLLNKSKKRPFITLKFATTLD------------GKIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
SSG + WI++ TSR LRG+ D ++VG NT +DNP LT R G G P+RI+L L
Sbjct: 158 SSGESKWITNSTSRKDSHILRGKVDGILVGKNTASKDNPFLTNRSGEGDNPIRILLDSEL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYFHDRG 345
+ N+++ S+A TIV T K +K + S V V D LN ++ + R
Sbjct: 218 EINSNYNIYN-SEAKTIVFTSSSDFEKREKLIESCEVVRVSRDEKGLNLNEICDELLKRD 276
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
IL E G + +S I +GL+ +++ ++APK++GG + G++ +S +L+
Sbjct: 277 IAHILVEGGSEVHSSFIRAGLVDEIYHYIAPKLLGGGKSVDDGE--GILNLSDSLNF 331
>gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
NEM316]
gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316]
Length = 369
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 194/388 (50%), Gaps = 36/388 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ED Y+ A A+K GF +P+P G +I ++ +GY G AE QA++
Sbjct: 3 KKED--YMALALKEAEKGMGFVAPNPLVGAVIVKDD-RIISKGYHKRFGDLHAERQAIKN 59
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+T Y+ +EP CH AL+++GI +VVVG +P + G+ + LR
Sbjct: 60 ADEDISGSTLYVTLEPC-CHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRK 118
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+ L V V R+ C +N I T + PF KYAMTLD
Sbjct: 119 ECLNVEV----------GILREECDALNERFIFHMTYKQPFVYLKYAMTLD--------- 159
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +G + WIS++ SR V LR + A++VG NTV DNPRLT R G +
Sbjct: 160 ---GKIATKTGDSKWISNEHSRQSVQKLRQKCSAIMVGINTVLADNPRLTCRIPKGEALV 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTI-----VVTQRGARRKFQKYLASRGVEVVEFD-ILN 333
RIV L +P ++ L V A TI + A+++ K + R ++V D L+
Sbjct: 217 RIVCDSQLKIPLDSYL--VKSAKTIPTWIATCSDNLAQQQTLKEMGCRLIKVPRKDGKLD 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ +M G S+L E G +L SA+ +G+++++ F+APKIIGG A T +S G+
Sbjct: 275 LKVLMTILGQEGIDSLLIEGGSSLHFSALKAGIVNRLIVFIAPKIIGGLKAKTAISGEGL 334
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++Q + DI ++ D++I G ++
Sbjct: 335 DWLNQDFRVKDIELSRMDSDVVIEGKVE 362
>gi|398812950|ref|ZP_10571656.1| riboflavin biosynthesis protein RibD [Brevibacillus sp. BC25]
gi|398039940|gb|EJL33062.1| riboflavin biosynthesis protein RibD [Brevibacillus sp. BC25]
Length = 368
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 193/384 (50%), Gaps = 29/384 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D+ Y+ A ++A + G TSP+P G +I G + G G G AEV A+ G
Sbjct: 3 QDSKYMDLALELARSARGQTSPNPMVGAVIVKD-GTIVGMGAHLRAGEPHAEVHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G AL+ A + RVVV +P + G+ + LR+ GL
Sbjct: 62 EKAQGATVYVTLEPCSHYGKTPPCAEALIAADVRRVVVATLDPNPLVAGRGMEMLRAAGL 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + EE K+ +N H + PF K A TLD
Sbjct: 122 EVAV-------GVREEEAKA---LNEVFFHYIQTSRPFVTVKTASTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG---GHTPM 279
GKIA+ +GH+ WI+ +R V +LR + DA+++G T+ D+P LTAR G P+
Sbjct: 160 GKIASFTGHSRWITGAEARAEVHELRRQHDAILIGVGTILADDPLLTARKEEQRFGSQPV 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-LNSRDVM 338
R++L L P +A + +DA T + T A R+ Q+ LA+RGV+V+ + + V+
Sbjct: 220 RVILDNHLRTPLDARVVQNADAKTWIFTTDAASREKQELLAARGVKVITTEAPIRVEKVL 279
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + G S+L E G + S + + I KV + +A K+IGG AP+P G + +
Sbjct: 280 DTLGELGITSLLVEGGQEVNGSFLQARAIQKVVSHIALKLIGGSGAPSPFGGQGFATVGE 339
Query: 399 ALDLIDICYEQVGP-DMLISGFLQ 421
A+ L ++ +G D+ I G+ Q
Sbjct: 340 AVQLTNVTVTPIGKGDVQIIGYPQ 363
>gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
2522]
gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
2522]
Length = 362
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 191/374 (51%), Gaps = 27/374 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A + G T+P+P G +I + ++ G G G AE A+E
Sbjct: 2 DNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNN-QIVGFGAHLKAGEHHAEKHAIEMAKD 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G A+++AGI +V++G +P + G+ ++ L G++
Sbjct: 61 KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EE K +N H ++ PF K A +LD G
Sbjct: 121 VEV------GCMKEETDK----LNDVFFHFVNTKKPFVTLKSATSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
KIA +G + WI+S+ SR V LR ++DA++VG NTV +D+P LT R GG P+R++
Sbjct: 159 KIATRTGESQWITSEESRKDVHQLRHKNDAILVGINTVIKDDPALTTRLPDGGKNPIRVI 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L + L +P A L + + T V+T R A ++ L +G +V ++ D + ++
Sbjct: 219 LDRELRIPMTAKLINDHASLTWVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYL 278
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ S+L E GGT+ S + SG +V ++AP +IGG++A + S G+ +++ A
Sbjct: 279 LGEHNITSLLVEGGGTVNDSFLKSGEFQQVIVYIAPLLIGGEDALSSFSGSGIEKLADAK 338
Query: 401 DLIDICYEQVGPDM 414
L EQ+G D+
Sbjct: 339 KLKVQSLEQIGNDI 352
>gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
786 str. D14]
Length = 373
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 188/381 (49%), Gaps = 28/381 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A D+A+++ G T +P G ++ G + G G +GT AEV A+ G
Sbjct: 5 DDEYYMALALDMAERAQGQTGTNPVVGAVVVKD-GALVGLGTHLKRGTPHAEVHALNMAG 63
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
S G+T Y+ +EP HG L+ + RVVV +P + G+ + LR+ G+
Sbjct: 64 SQAEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLRAAGI 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V R+ L +N I T+ +P+ K A TLD
Sbjct: 124 EVEV----------GVLRERALKLNRRFIKFITTGMPYVTIKSASTLD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRI 281
GK+A+ +G + WIS++ +R+ V +R R A++VG +T+ D+P+LT R G +P+RI
Sbjct: 162 GKLASRTGDSKWISNEGAREIVHTMRHRHQAIMVGASTILADDPQLTTRLSVPGLSPIRI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVM 338
+ TL +PE A + APT +VT A L G EV+ ++ R+ +
Sbjct: 222 IADSTLRIPETAQVLRDGQAPTWIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNAL 281
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
RG S+L E GG L S + L+ ++ F+APK+IGG AP+ S G M
Sbjct: 282 VQLGQRGISSVLVEGGGRLNGSLLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAGYDLMRD 341
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+ L D+ EQ+G ++ I G
Sbjct: 342 AVTLRDMEVEQIGDNVCIRGV 362
>gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
Length = 375
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 192/381 (50%), Gaps = 34/381 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A ++A K GFT+P+P G +I GKV G+GY G AE +A+ +
Sbjct: 9 KDRQYMKMALELAQKGMGFTAPNPMVGAVI-VKRGKVIGQGYHRKYGEPHAEREALASCT 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA+ Y+ +EP +G V+A++++GI RV++G +P + G+ +R L+ G+
Sbjct: 68 EQPEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGI 127
Query: 163 QV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+V +VL E+ C +N + ++ P+ V KYAMT+D
Sbjct: 128 EVTENVLKEE------------CDKLNEAFFYYIQNQKPYVVMKYAMTMD---------- 165
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA +G + W++ + +R V R + ++ G TV D+P LT R G P+R
Sbjct: 166 --GKIATYTGASRWVTGEAARMHVQKQRLKYTGIMAGVGTVLADDPMLTCRLENGRNPVR 223
Query: 281 IVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----R 335
I+ L P + + S PTI T ++K + Y G +V++ N
Sbjct: 224 IICDSHLRTPLNSRIVKTASTIPTIFATSSKDQQKIKNY-EDMGCKVLDVPEKNGHIDLN 282
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ME SIL E GGTL SA+ SG++ KV ++APK+ GG++A TP+ G +
Sbjct: 283 RLMELLGAAKIDSILLEGGGTLNWSALESGIVQKVQTYIAPKLFGGESAKTPIEGKGFPD 342
Query: 396 MSQALDLIDICYEQVGPDMLI 416
+ A+ L + ++G D LI
Sbjct: 343 PASAILLKNSEIIRIGDDFLI 363
>gi|434381009|ref|YP_006702792.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli WesB]
gi|404429658|emb|CCG55704.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli WesB]
Length = 365
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 189/384 (49%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+R A + A K GFTSP+P G +I KV G GY G AE+ A + G
Sbjct: 5 YMRMAIEEAKKGEGFTSPNPLVGAVIVKEN-KVIGIGYHKKYGENHAEINAFLNAKENGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA+ Y+ +EP +G A+++ + +V++G + + G ++ L+ G++
Sbjct: 64 DVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C +N + ++ PF V KYAMT+D G
Sbjct: 124 VIV-------NVLEE---ECRKLNEVFFYYIANKRPFVVMKYAMTMD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 162 KIATVSGKSKWITSEKTREHSHRFRNKYSAIMVGINTVIEDNPMLNCRLPNTRNPIRIIL 221
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L + ++N+ S D T + T G +K K + GVE+++ + N R ++M
Sbjct: 222 DSSLKISLDSNICKTSKDIKTFIATVSGDEKKI-KEIEGLGVEIIKTESDNGRVSLKELM 280
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ S+ E G +L AS + L++K ++APKI GG A +P+ G+ E
Sbjct: 281 KILGEEKNIDSVYVEGGASLHASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGKGIDEPD 340
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A+ L+ ++ D+ + +L+
Sbjct: 341 NAIRLVGNSITKIEDDLFLEYYLK 364
>gi|402815190|ref|ZP_10864783.1| riboflavin biosynthesis protein RibD [Paenibacillus alvei DSM 29]
gi|402507561|gb|EJW18083.1| riboflavin biosynthesis protein RibD [Paenibacillus alvei DSM 29]
Length = 388
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 196/382 (51%), Gaps = 32/382 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A++ G T +P GC+I G+V G G +G AEV A+ G
Sbjct: 7 DELYMQLALDMAERVLGQTDVNPAVGCVI-VKEGRVVGLGAHLRRGEGHAEVHALAMAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP +G L+++G+ RVV+ +P + G+ + L+ G++
Sbjct: 66 AAQGATAYVTLEPCSHYGRTPPCCLRLIESGVARVVIACVDPNPAVAGKGIALLKQHGIE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++ E + + + A I T+ +PF K A TLD G
Sbjct: 126 VTV-------DVLREQGLALIEMFAKYI---TTGLPFITLKTASTLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIV 282
KIA +SG + WIS++ R+ V +R R A++VG TV DNP LT R G +P+R++
Sbjct: 164 KIATASGDSKWISNEQCREVVHTMRHRHQAIMVGIGTVLADNPSLTTRLTVPGVSPIRLI 223
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVME 339
+ L +P EA + T + T A + ++ L SRGV+VV E + +N +ME
Sbjct: 224 VDSKLRIPVEAKVVTDRSVRTCIFTTALASEQKRRELKSRGVDVVACGEGEQVNLHQMME 283
Query: 340 YF--HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ HD G SIL E GG L + + LI K+ F+AP I+GG+ AP + G+ M
Sbjct: 284 WCGQHDIG--SILLEGGGHLNGAMLKEKLIDKIVLFIAPLIVGGQQAPGNFAFGGVSRMK 341
Query: 398 QALDLIDICYEQVGPDMLISGF 419
A L + E +G ++ ISG+
Sbjct: 342 DAYHLQHMEVEVLGDNVCISGY 363
>gi|374320530|ref|YP_005073659.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus terrae HPL-003]
gi|357199539|gb|AET57436.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus terrae HPL-003]
Length = 369
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 183/379 (48%), Gaps = 29/379 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A + A + G T P+P G +I + G++ G G G AE+ A+ G +
Sbjct: 10 YMRLALENAKSAKGQTEPNPLVGSVI-VNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 68
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG A+VQAGI RVV+ +P + G+ V+ L+ G++V
Sbjct: 69 GATIYVTLEPCSHHGRTGPCAEAIVQAGIRRVVIAALDPNPLVSGRGVQILKDAGIEV-- 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+ + + +N S+ P+ K A+TLD GKIA
Sbjct: 127 --------IVGVCEQESVRMNEVFNQYIVSKRPYITIKSAVTLD------------GKIA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S+ +R+ V LR ++VG TV DNP+LT R G P+RI+L T
Sbjct: 167 TRTSESKWITSEVAREDVHRLRHEHVGILVGVQTVIHDNPQLTTRLPEGRNPIRIILDST 226
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDVMEYF 341
L +P +A + +APT + T R + L GV+V D +N +++
Sbjct: 227 LRIPLDARVITDGEAPTWIFTGRAYDEGKRNQLEQLGVKVYPTQDENSDRVNLPQMLDIL 286
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S+ E G + AS + GL K+ ++APK++GG+ AP + G+ MS A+
Sbjct: 287 GAAEVSSVFVEGGAEVNASFVQQGLADKLVLYIAPKLVGGRGAPGFLGGEGVSAMSDAVA 346
Query: 402 LIDICYEQVGPDMLISGFL 420
L D+ QVG D I G+
Sbjct: 347 LQDLSITQVGVDWKIEGYF 365
>gi|421766438|ref|ZP_16203212.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus garvieae DCC43]
gi|407625206|gb|EKF51921.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus garvieae DCC43]
Length = 371
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 183/375 (48%), Gaps = 30/375 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A ++A K G +P+P G +I K+ GEGY G AE A+ + +
Sbjct: 16 YMKLALELAKKGGGMVNPNPQVGAIIVKKD-KIIGEGYHEQYGQAHAERSALSSCIESPQ 74
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP G A++ I RV++G +P + G+ + L+ G++V
Sbjct: 75 GADMYVTLEPCAHQGRQPPCFKAIIDNKIKRVIIGSLDPNPLVSGKGLSQLKKAGIEV-- 132
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+G L+ K C +N H T + PF KYAMTLD GKI+
Sbjct: 133 IGPVLE--------KECKEINQIFYHFITHQTPFVTIKYAMTLD------------GKIS 172
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ + +R++V R R ++VG TV DNP+LT R P+RI+
Sbjct: 173 TVAGKSKWITGEKAREKVHMDRARFMGIMVGVGTVIADNPKLTNRGTSLKNPIRIICDTG 232
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVMEYF 341
L P E+ + + + TI+ T + Q Y+ S+G +++ LN +++M+
Sbjct: 233 LRTPIESEVVATAHEFQTIIATSVKDLKAHQPYI-SKGCKIITVSKKKGSLNLKELMKKL 291
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
D SI+ E G +L ASA+ G++HK+ A++APKI GG A TPV G+ QA
Sbjct: 292 GDELIDSIILEGGASLNASALEEGIVHKIQAYIAPKIFGGSTAKTPVGGEGITFPEQATQ 351
Query: 402 LIDICYEQVGPDMLI 416
Q G D+L+
Sbjct: 352 FKITSITQFGEDILL 366
>gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
2926]
gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
2926]
Length = 359
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 33/377 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A K G +P+P G ++ G + GEGY G AEV A+ GS
Sbjct: 2 DKKYMETALKLALKGEGNVNPNPMVGAVV-VKNGTIVGEGYHKQYGGPHAEVYALNEAGS 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
CRGAT Y+ +EP +G +++ GI + V+ +P + G+ V+ L G++
Sbjct: 61 ECRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E K L +N + T+ PF K A+TLD G
Sbjct: 121 VEV-------GLME---KEALELNRVFMKYITTEKPFVFLKCAITLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIAA +G + WI+++ SR++V LR R ++VG NT+ DNPRL AR GG+ P RIV+
Sbjct: 159 KIAARTGSSKWITNEVSREKVQRLRHRFMGIMVGANTLVMDNPRLNARIEGGNDPFRIVI 218
Query: 284 TQTLNLPEEANLWDVSDAPTIVVT-QRGARRKFQKYLASRGVEVV-----EFDILNSRDV 337
L +P ++N + D +I+VT ++ + L +RGV EF I D+
Sbjct: 219 DPELIVPSDSNFASMKDGKSIIVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKI---SDI 275
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + S+L E G L + A I F+APKI+G + + +
Sbjct: 276 LKKVGELKIDSVLLEGGSYLISKAFEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIE 335
Query: 398 QALDLIDICYEQVGPDM 414
+A +L ++ + Q G ++
Sbjct: 336 EAFELKNVKFNQYGNNI 352
>gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Bacillus coahuilensis m4-4]
Length = 377
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 185/378 (48%), Gaps = 29/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A +G TSP+P G +I G++ G G G AE+ A+ G +
Sbjct: 10 YMNMAIQNAKVMSGQTSPNPLVGAVIVRD-GEIVGFGAHMKAGEPHAEIHALRMAGDKAK 68
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + AL++AGIT VVV +P + G VR L G++V
Sbjct: 69 GATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILEDAGIKV-- 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + EA++ +N H + PF K A +LD GKIA
Sbjct: 127 ----ITGVMEAEAKR----MNEVFNHFIVTGRPFITLKTASSLD------------GKIA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+ ++ WI+ + +R+ V +R DA++VG NT+ DNP LT R + G P+RI++
Sbjct: 167 THTHNSKWITCEGAREDVHKMRNVYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIID 226
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVMEYF 341
L +P + + +APT + T + + + G V++ +N DV+ Y
Sbjct: 227 SALKIPLNSKVLTDKEAPTWIFTSKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYL 286
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S++ E GGT+ +S + L+ K + APK+IGGK APT + G+ +SQA+D
Sbjct: 287 GKMNVSSLIIEGGGTINSSFVEEKLVQKAVIYFAPKLIGGKEAPTFLEGKGVAIVSQAID 346
Query: 402 LIDICYEQVGPDMLISGF 419
L ++ +G D I G+
Sbjct: 347 LENMTITSLGKDFKIEGY 364
>gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Roseburia intestinalis XB6B4]
Length = 396
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 214/416 (51%), Gaps = 52/416 (12%)
Query: 22 KKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVA 81
K++ L +F + R Y+RRA ++A+ G+T +P G ++ ++
Sbjct: 15 KQQRLQILSCRKGKIFMQQER-----YMRRAMELAELGRGWTKTNPVVGAVLVKED-RII 68
Query: 82 GEGYLYAQGTKPAEVQAVEAGGSFCR-------GATAYLNMEPGDCHGDHT--AVSALVQ 132
GEGY G AE +A+ + CR GA Y+ +EP CH T A+++
Sbjct: 69 GEGYHKKFGGLHAEREAL----ADCRSRGEDPAGADLYVTLEPC-CHYGKTPPCTQAVIE 123
Query: 133 AGITRVVVGIR--NPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPL 190
AGI+ V VG + NPL + G +R LR QG+ V +++E C N
Sbjct: 124 AGISHVFVGAKDINPL--VAGGGIRQLREQGILV-------TEGVLQE---ECEYQNRVF 171
Query: 191 IHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR 250
H +++P+ KYAMTLD GKIA++SG + WI+ + +R++V +R
Sbjct: 172 FHYIQTKLPYVRMKYAMTLD------------GKIASASGKSKWITGEAAREQVHRMRHE 219
Query: 251 SDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDA-PTIVVT-- 307
++VG TV D+P L R P+RIV TL +P ++ + ++ TI+ T
Sbjct: 220 MTGIMVGAGTVIADDPMLNCRLPQTKDPVRIVCDTTLRIPLKSRIVQTAEEQKTIIATCC 279
Query: 308 QRGAR-RKFQKYLASRGVEVVEFD-ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSG 365
Q AR R++QKY A R + + D ++ +++M G S+L E G L SA+ +G
Sbjct: 280 QDEARIREYQKY-ACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGAMLNWSALEAG 338
Query: 366 LIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
++++V+A+VAPK+ GG +A +PV+ +G+ A ++ +QVG D+LI+G L+
Sbjct: 339 IVNEVYAYVAPKLFGGADAKSPVAGMGVDHPDDAYCMVSQRVQQVGEDILIAGELK 394
>gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
F0264]
gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
F0264]
Length = 382
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 185/378 (48%), Gaps = 45/378 (11%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
EDA Y++ A ++A K G +P+P G +I + GK+ GEGY G AEV A+E G
Sbjct: 17 EDAEYMKMALELAKKGIGRVNPNPLVGAVIVKN-GKIIGEGYHKMFGEAHAEVHAIENAG 75
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP +G +++AGI R V+G +P + G+ + L++ G+
Sbjct: 76 EETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKNSGI 135
Query: 163 QV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+V +VL +K C +N S++P+ K +TLD
Sbjct: 136 EVTENVL------------KKECDELNQVFFKYIKSKIPYLFLKCGITLD---------- 173
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA S+G + WI+++ +R++V R + ++VG NTV DNP LTAR G P R
Sbjct: 174 --GKIALSNGESKWITNEKAREKVQYYRNKFMGIMVGINTVLYDNPSLTARIENGVDPFR 231
Query: 281 IVLTQTLNLPEEANLW-DVSDAPTIVVT----------QRGARRKFQKYLASRGVEVVEF 329
I++ L + E+ N+ + SD T++VT + RK K++ +G +
Sbjct: 232 IIIDPNLRITEDYNIIKNNSDGKTVIVTSVINKNSDKVEIFKERKKLKFIFLKGKNFL-- 289
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
RD++E G S+L E G L + A S +I F++ KI G K A + +S
Sbjct: 290 ----MRDILEEIGKEGIDSVLLEGGEKLISKAFSEKVIDGGEIFISNKIFGDKTAKSFIS 345
Query: 390 ELGMVEMSQALDLIDICY 407
+ +A+ L +I Y
Sbjct: 346 GFTKINTDEAITLNNIKY 363
>gi|433459946|ref|ZP_20417582.1| riboflavin biosynthesis protein RibD [Halobacillus sp. BAB-2008]
gi|432192062|gb|ELK48975.1| riboflavin biosynthesis protein RibD [Halobacillus sp. BAB-2008]
Length = 378
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 190/394 (48%), Gaps = 30/394 (7%)
Query: 30 VANSAPVFCKFSRAE---DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYL 86
+++S F K + D Y+ A ++A + G TSP+P+ ++ +V G G
Sbjct: 1 MSSSGSFFSKIGGMQMERDEKYMSMAVEMASSTVGQTSPNPSVAAVVVKDN-QVVGVGVH 59
Query: 87 YAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNP 145
G AEV A+ G GA Y+ +EP HG A++ AGI RV++ +P
Sbjct: 60 VKAGEAHAEVHALRMAGEKADGAEIYVTLEPCSHHGRTPPCAQAVIDAGIRRVIIASHDP 119
Query: 146 LQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKY 205
+ G+ + +R+ GL+V + + EA K +N H + +P+ K
Sbjct: 120 NPRVSGRGIEMMRAHGLEVEM------GVLKAEADK----LNRAFFHSIQTGMPYVRLKS 169
Query: 206 AMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDN 265
AM+LD GKIA S+G + WI+ + +R R SDA++VG NTV DN
Sbjct: 170 AMSLD------------GKIATSTGESQWITGEKARADGHRYRHLSDAILVGINTVLMDN 217
Query: 266 PRLTAR-HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV 324
P+LT R G G P+RIV+ L +P + L +APT + T ++K + V
Sbjct: 218 PKLTTRMEGQGSHPVRIVMDTHLRIPPSSQLIQNGEAPTWIFTLENDQKKKDLFEEQDHV 277
Query: 325 EVVEFD--ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
EV+ + + DV+ Y + S+L E G T+A + + +G + + ++APK+IGG+
Sbjct: 278 EVIRMEGSTIAVDDVLRYLGKKRITSLLVEGGATIADAFVRAGKVDETVTYIAPKLIGGR 337
Query: 383 NAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
A TPV G+ ++ I E +G D+ +
Sbjct: 338 EALTPVGGKGIQQLKNVQSFEVILTEILGDDVKV 371
>gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
SRS30216]
gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
SRS30216]
Length = 338
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 198/389 (50%), Gaps = 66/389 (16%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + RA +A + G TSP+P GC++ + G+VAGEG+ G AEV A+ A G
Sbjct: 3 DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNALAAAGD 62
Query: 105 FCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
RG TAY+ +EP C +HT V AL++AGI RVV + +P L G R LR+
Sbjct: 63 RARGGTAYVTLEP--C--NHTGRTGPCVQALLRAGIARVVFAVADP-GALAGGGARELRA 117
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V + + EEA + VN + A P ++K+A TLD
Sbjct: 118 AGVEV------VAGVLAEEAER----VNEAWLTSARRHRPHVLWKFAATLD--------- 158
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---- 275
G+ AA+ G + WISS SR +V DLR R DAVV G TV D+PRLTAR G
Sbjct: 159 ---GRSAAADGTSRWISSAASRGQVHDLRRRVDAVVAGSGTVLADDPRLTAREPDGTLSA 215
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+V+ + +P A + D S APT+V T
Sbjct: 216 RQPLRVVVDRRGRVPATAAVLDGS-APTLVSTA-----------------------ATPA 251
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
D++ H+RG +S+L E G TLA + +++GL+ +V A+VAP ++G P ++ G+
Sbjct: 252 DLLAELHERGVVSVLLEGGPTLAGAFLAAGLVDRVTAYVAPTLLGA--GPAALAGTGITT 309
Query: 396 MSQA--LDLIDICYEQVGPDMLISGFLQP 422
++ A LD+ D+ VG D+ +SG P
Sbjct: 310 IADAVGLDVDDVSV--VGGDVRLSGRPAP 336
>gi|430750124|ref|YP_007213032.1| riboflavin biosynthesis protein RibD [Thermobacillus composti KWC4]
gi|430734089|gb|AGA58034.1| riboflavin biosynthesis protein RibD [Thermobacillus composti KWC4]
Length = 372
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 190/389 (48%), Gaps = 36/389 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
R +D Y+R A ++A K+ G T +P GC+I G++ G G +G AE+ A+
Sbjct: 2 IDRLDDEYYMRLALELAAKARGQTGVNPVVGCVI-VKDGRIVGLGSHLRRGEAHAEIHAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+ G RGAT Y+ +EP +G L++AG+ RVV +P + G + LR
Sbjct: 61 KMAGEEARGATVYVTLEPCSHYGRTPPCADRLIEAGVGRVVAAATDPNPKVSGTGLAKLR 120
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+ G+ E + + E+RK +N + +PF K TLD
Sbjct: 121 AAGI------ETVSGVLEAESRK----LNEAFEKYIRTGLPFVTLKAGATLD-------- 162
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHT 277
G++AA SG + W++ + SR V LR DA+++G T +D+P LT R G
Sbjct: 163 ----GRLAAGSGDSRWVTGEESRAAVHTLRHWHDAIMIGAGTALKDDPSLTTRTPVPGLH 218
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILN 333
P+RIV+ L LP L+ APTIV+ A ++ L + G EV+ + ++
Sbjct: 219 PVRIVVDSQLRLPLHLKLFTDGQAPTIVLAAVDADSGRRRALEAAGAEVISCAAQGGRVD 278
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT---PVSE 390
RD M +R S+L E GG L + + +GL+ K+ F APKI+G P P++E
Sbjct: 279 LRDAMRKLGEREIGSVLLEGGGRLNGAMLQAGLVDKIAVFFAPKIVGSGGIPLFDWPIAE 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGF 419
M++A++L I EQ G D ++G+
Sbjct: 339 ----RMAEAVELTRIVIEQYGDDWCVTGY 363
>gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
BAA-798]
gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
BAA-798]
Length = 364
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 191/388 (49%), Gaps = 40/388 (10%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A+ + G T P+P G ++ G V G+G G AEV A+ G RG
Sbjct: 1 MRRALELAESALGRTWPNPAVGAVVVRD-GLVIGKGATQPPGGPHAEVVALAEAGEAARG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV- 166
A Y+ +EP G + A+++AG+ V +P + G+ V LR G++VH+
Sbjct: 60 AILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLG 119
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L E ++I N R + +PF KYAMTLD G+IA
Sbjct: 120 LCEREATRI-----------NEGFFKRVRTGLPFVTLKYAMTLD------------GRIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------HGGGHTPM 279
+G + WI+ + +R LR R+DA++VG TV D+P LT R +GG H P+
Sbjct: 157 TRTGSSKWITGEEARTCAHRLRDRADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPL 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAP--TIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV 337
R+V+ P A + D P T+V A + G EV F + R
Sbjct: 217 RVVVDSRGRTPARAAMLR-RDTPGRTLVACTTLAPEDRRLAWQDAGAEVAVFAPEDGRVP 275
Query: 338 ME----YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+E Y D G + L E GGTL + + GL K+ AFVAPK+IGG+ AP PV G+
Sbjct: 276 LEALLRYLGDTGVNTALVEGGGTLHGALLDVGLADKIVAFVAPKLIGGEGAPAPVGGRGV 335
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
+M+ AL+L D+ QVG D+LI G+L+
Sbjct: 336 ADMASALELADVRVTQVGRDLLIEGYLR 363
>gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Mannheimia haemolytica PHL213]
gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Mannheimia haemolytica PHL213]
Length = 359
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 186/371 (50%), Gaps = 30/371 (8%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A +A+K+ G+TSP+P GC+I + G + EGY G+ AE A+ GATA
Sbjct: 4 AITLAEKARGWTSPNPLVGCVIVKN-GNIIAEGYHQKAGSWHAERNAILNCEEDLTGATA 62
Query: 112 YLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP HG S L ++ GI +V +G R+P + G+ LR+ G++V ED
Sbjct: 63 YVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVV---ED 119
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
R C +N H ++ P+ + KY MT D GKIA +G
Sbjct: 120 FM-------RTECDALNPIFFHYIQTKRPYVLLKYGMTAD------------GKIATYTG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLP 290
++ WI+ + +R V R A++VG TV D+P L +R P+RIV L P
Sbjct: 161 NSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIVCDSQLRTP 220
Query: 291 EEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFHDRG 345
++ L + TI+ T +K +Y A GVE++ + R D+++ + G
Sbjct: 221 LDSQLVQTARQYRTIIATLNNDAKKQAEYTAC-GVEILVTGERDKRVDLADLLQKLGELG 279
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
S+L E G L S + GL+++V ++APK+IGGK A TP+ G+ E++QA+ L
Sbjct: 280 IDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLK 339
Query: 406 CYEQVGPDMLI 416
E +G D+L+
Sbjct: 340 STELLGEDILL 350
>gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
ATCC 35110]
gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
ATCC 35110]
Length = 368
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 35/388 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
+ED YI R +A K AGF SP+P G +I GK+ GEG+ G AEV A+ +
Sbjct: 6 SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVI-VHNGKIIGEGFHEVYGGPHAEVNAIGSV 64
Query: 103 GS--FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRS 159
+ +T Y+N+EP G + L+ + I RVV+G +P +H+ G+ LR
Sbjct: 65 AQPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRH 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V V ++E L +N IH + PF K+A TLD
Sbjct: 125 AGVEVKV-------GVLE---SEALRLNEAFIHFHIQKRPFVALKFAQTLD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GKIA +SG + WI++K SR LR A+++G NT D+P LT RH G P+
Sbjct: 166 ---GKIATTSGDSKWITNKASRTLGHQLRSWHSAILIGTNTALADDPELTVRHVEGKNPV 222
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI------LN 333
R++L + L++P A +++ + + + + L + VEV F + L+
Sbjct: 223 RVLLDRRLSVPLTAKIFNAAANTLVFTSSQNTNHPKVGKLNEKNVEV--FFVTENEAGLS 280
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
++ + +++ LS+ E G + + I G K + F+APKI+GG T L +
Sbjct: 281 FSEIFQVLYEKKLLSVYVEGGSGVYSRLIQEGYCEKFYGFIAPKIVGGDGLAT-FRPLEI 339
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
M++A+ L + + D+ I G+
Sbjct: 340 TNMAEAVSLRFHQVQMLDGDIFIEGYFN 367
>gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
Length = 369
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 194/380 (51%), Gaps = 28/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A D+A+++ G T +P GC++ G +AG G +GT AEV A+ G
Sbjct: 9 DEFYMSLALDLAERAQGQTGINPVVGCVVVKD-GALAGVGTHLERGTPHAEVHALNMAGP 67
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G S L+ G+ RVVV +P + G+ ++ LR+ G++
Sbjct: 68 KAAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ I+++ L +N + T+ PF K A TLD G
Sbjct: 128 V-------ETGILKD---RALRLNEAFVKFITTGRPFVTLKTASTLD------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA+ +G + WIS++ SR+ V LR R ++VG +TV DNP LT R G G P+RI+
Sbjct: 166 KIASKTGDSKWISNEKSRELVHTLRHRHQGIMVGVSTVIADNPSLTTRLGVEGLHPVRII 225
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
+ +L +P ++++ APT ++ A + L G +V ++ + +
Sbjct: 226 VDSSLRIPLDSHVVSDGLAPTWILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALL 285
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G SIL E GGTL S + L+ ++ F+APKIIGG +AP G +M+QA
Sbjct: 286 QLGQKGIASILLEGGGTLNGSMLEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQA 345
Query: 400 LDLIDICYEQVGPDMLISGF 419
+ L + E++G ++ ++G
Sbjct: 346 ISLTGLETERLGDNIYVTGI 365
>gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophus aciditrophicus SB]
gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophus aciditrophicus SB]
Length = 380
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 189/401 (47%), Gaps = 39/401 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA +A K G+ SP+P G +I + ++ GEGY G AE+ A+
Sbjct: 3 DEFYMKRALQLARKGEGWVSPNPMVGSVIVKND-RIIGEGYHRKFGEAHAEINALNGAKE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+++EP +G V LV RVV+G +P + G+ + L+ G++
Sbjct: 62 SAEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C +N + R+PF KYA TLD G
Sbjct: 122 VTV-------GVLEEV---CREINESFLKFIQFRIPFVTLKYAQTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+IA S+GH+ WISS SR LR DA++VG TV D+P LT R G P+RIVL
Sbjct: 160 RIATSTGHSRWISSPPSRRFAHRLRHAHDAILVGIGTVLSDDPELTVRLVRGKNPLRIVL 219
Query: 284 TQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILNS-----RDV 337
L +P A + D A T++VT A RK L RG+E + + +S +
Sbjct: 220 DSRLRIPLTARILQEQDQAKTLMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ RG S+L E G + + ++ L ++ A +APKI G V +L + M
Sbjct: 280 LRELGSRGIASVLVEGGSGILTALMAQDLADRLIAIIAPKISG--RGIEAVGQLNITSMG 337
Query: 398 QALDLIDICYEQVGPDMLISGFLQ-------PIPDLMPVIP 431
+A+ L+ + G D++I + P P P+IP
Sbjct: 338 KAIGLVFRKIYRKGDDLIIDSRFRRPAETSHPAPPDKPIIP 378
>gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
YK9]
gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
YK9]
Length = 373
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 187/382 (48%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+R A +A + G TS +P GC+I G++ G G +G AEV A+ G
Sbjct: 7 DAFYMRLALQMAQGATGQTSINPVVGCVI-VKEGRIIGMGAHLKRGEGHAEVNALRMAGD 65
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP + T L++A I RVVV ++P + G V LR+ G+
Sbjct: 66 EAEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKLRAAGI 125
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V +S + E +L SR+PF K A TLD
Sbjct: 126 AVSVGLLAEESHAMNERYNKYIL----------SRLPFVTLKTASTLD------------ 163
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
G+IAA +G + WI+ SR+ V +R + D ++VG T+ D+P+LT R P RI
Sbjct: 164 GRIAAKTGDSRWITGPASREAVHTMRHQHDGIMVGIGTLLADDPQLTTRLEVPALHPARI 223
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---LNSRDVM 338
++ L +P +A + A TIV+T A + + L + GVE+V+ +N + M
Sbjct: 224 IVDSALRIPLDARVVTDGMARTIVLTTTAANPEKRSSLQAAGVEIVDCGDGPHVNLTEAM 283
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA-PTPVSELGMVEMS 397
D SIL E GG L + +++GL+ K+ F APK+IGG A P G +M+
Sbjct: 284 RLLGDMEIGSILLEGGGQLNGAMLAAGLVDKISLFFAPKLIGGGEASPAAFVFEGFEKMA 343
Query: 398 QALDLIDICYEQVGPDMLISGF 419
A+ L YEQ G D+ + G+
Sbjct: 344 DAITLESTRYEQYGDDIAVIGY 365
>gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
Length = 359
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 193/380 (50%), Gaps = 39/380 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+RRA ++A K G+T+P+P G +I G+V GEG+ A G AE A+++
Sbjct: 5 YMRRAIELAKKGTGYTNPNPLVGAVIVKD-GEVIGEGFHEAYGGLHAERNALKSCTKDPN 63
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GA Y+ +EP CH T A++++GI +V VG +P + G ++ LR G++
Sbjct: 64 GAELYVTLEPC-CHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEA- 121
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
++ I++E C +N + T P+ V KYAMTLD GKI
Sbjct: 122 ------ETGILDE---ECRGLNDIFFYYITHDTPYVVLKYAMTLD------------GKI 160
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A +G + WI+ +R+ V LR R A++ G +TV D+P L AR GG+ P+R++
Sbjct: 161 AVRTGESKWITGGEAREHVQFLRHRYAAILTGIHTVISDDPMLNARIEGGNNPVRVICDS 220
Query: 286 TLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVV-------EFDILNSRDV 337
L +P + + + PTI+ R + + L + G V+ + D+L ++
Sbjct: 221 RLRIPISSKIVQSAKVIPTIIAACE--RNEKAQRLEALGCRVLICPGKDGKTDLL---EL 275
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M S+L E G + S I +G ++KV+AF+APKI GG+ A +PV G+ ++S
Sbjct: 276 MRILRKEKIDSVLVEGGADINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKIS 335
Query: 398 QALDLIDICYEQVGPDMLIS 417
AL L + G D+L+
Sbjct: 336 DALLLNGPEITRFGEDLLLE 355
>gi|404477155|ref|YP_006708586.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli B2904]
gi|404438644|gb|AFR71838.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli B2904]
Length = 365
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 189/384 (49%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+R A + A K GFTSP+P G +I +V G GY G AE+ A + G
Sbjct: 5 YMRMAIEEAKKGEGFTSPNPLVGAVIVKDD-RVIGIGYHKKYGENHAEINAFLNAKENGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA+ Y+ +EP +G A+++ + +V++G + + G ++ L+ G++
Sbjct: 64 DVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C +N + ++ PF V KYAMT+D G
Sbjct: 124 VIV-------NVLEE---ECRKLNEVFFYYIANKRPFVVMKYAMTMD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 162 KIATVSGKSKWITSEKTREHSHRFRNKYSAIMVGINTVIEDNPMLNCRLPNTRNPIRIIL 221
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L + ++N+ S + T + T G +K K L GVE+++ + N R ++M
Sbjct: 222 DSSLKISLDSNICKTSKEIKTFIATVSGDEKKI-KELEGLGVEIIKTESDNGRVNLKELM 280
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ S+ E G +L AS + L++K ++APKI GG A +P+ G+ E
Sbjct: 281 KILGEEKNIDSVYVEGGASLHASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGEGIDEPD 340
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A+ L+ ++ D+ + +L+
Sbjct: 341 NAIRLVGNSITKIEDDLFLEYYLK 364
>gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
16795]
gi|164603692|gb|EDQ97157.1| riboflavin biosynthesis protein RibD [Clostridium bartlettii DSM
16795]
Length = 370
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 190/382 (49%), Gaps = 31/382 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+++A ++A G +P+P GC+I GKV GEGY G AEV A+ +
Sbjct: 9 EDNYYMKKALELAKLGIGAVNPNPLVGCIIVKD-GKVIGEGYHMKFGEPHAEVNAINSAK 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP G LV+ + RVV+ +P + G ++ L++ G+
Sbjct: 68 EDIEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIKKLQNAGI 127
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + I+EE L +N H + P + K A+++D
Sbjct: 128 EV-------TTGILEEEG---LKLNEVFFHYIKNNKPLVISKTAISMD------------ 165
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PMR 280
GKIA + WIS+++ R+ + R + A++VG NTV +DNP LT+R T P+R
Sbjct: 166 GKIATKHMESQWISNESCREMTHEYRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV----VEFDILNSRD 336
IV+ L +P +NL + + + TI+ T +K L + V+V + + ++
Sbjct: 226 IVIDTNLKIPMNSNLVNDNKSKTIIFTCNNDLKKIN-LLKEKDVDVHICPKKEEGVDLNF 284
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+E + S+L E G TL S + L+ KV F+APKIIGGK+AP+ VS G+ ++
Sbjct: 285 VIEKLGELKIDSVLVEGGATLNDSLFRNNLVDKVKIFMAPKIIGGKDAPSFVSGCGIEKL 344
Query: 397 SQALDLIDICYEQVGPDMLISG 418
S+A L + D+LI
Sbjct: 345 SEATKLEIKNTTMIDSDILIEA 366
>gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
WM1]
gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
WM1]
Length = 368
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 194/385 (50%), Gaps = 30/385 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+ A +A K G +P+P G ++ G++ GEGY G AE A+
Sbjct: 2 EDMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKE-GRIIGEGYYERYGALHAERNAILNCR 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G T Y+ +EP CH T A++Q+GI RVV+G +P ++G+ ++ LR QG
Sbjct: 61 ESPEGTTLYVTLEPC-CHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V ED+ ++ C +N H + P+ V KYAMT+D
Sbjct: 120 IEVV---EDV-------LKEECDKLNEVFFHFIQTGKPYVVMKYAMTMD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK AA +G + WI+ + +R RV + R R AV+VG TV D+P LT R G P+RI
Sbjct: 159 -GKTAAYTGASKWITGEDARRRVHEDRRRYSAVMVGIGTVLADDPLLTCRLENGRNPLRI 217
Query: 282 VLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLAS--RGVEVVEFD-ILNSRDV 337
+ L+ P ++ + S PT++ T R Q Y+ + R + V + D L+ +
Sbjct: 218 ICDTQLHTPLDSRIVLTASKVPTVIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M + S+L E GG L SA+ +G+++KV A++APK++GG TPV+ +G+
Sbjct: 278 MAKLGEEKIDSVLLEGGGILNWSALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSPE 337
Query: 398 QALDLIDICYEQVGPDMLISGFLQP 422
L + +G D+LI +QP
Sbjct: 338 AGYFLTNSTITCLGEDILIESEVQP 362
>gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
DSM 17678]
gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
DSM 17678]
Length = 372
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 190/379 (50%), Gaps = 35/379 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---EAGGS 104
Y+ A ++A K+ G+T+P+P G +I G+V G+GY G AE +A+ ++ G
Sbjct: 5 YMSMAIELAKKACGYTNPNPMVGAVIVKD-GQVLGKGYHTWCGCLHAEREALKDCQSRGV 63
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A+++ GI +VVVG +P + G+ ++ L+ G+
Sbjct: 64 TVTGATMYVTLEPC-CHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDHGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V + K C +N +H ++ PF V KYAMT D
Sbjct: 123 NV----------VTGVMEKECDDLNEVFMHYIKNKKPFVVMKYAMTAD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +R +V R R ++VG TV D+P L R G +P RI+
Sbjct: 161 GKIATRTGKSQWITGPEARGQVHKDRHRYAGIMVGIGTVLADDPTLNCRLEDGLSPTRII 220
Query: 283 LTQTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDV 337
+L +P ++N+ + TI+ T+ K +K L +++ + D ++ D+
Sbjct: 221 CDTSLRIPMDSNIVRTAKTYDTIIATRSKDNEKIRK-LKEASCQILVQDGQADRIDLVDL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M+ G S+L E GG L SA+ +G+++KV ++ KI GG +A +PV G+
Sbjct: 280 MDKVGSMGLDSVLLEGGGQLNWSALEAGIVNKVQVYIGNKIFGGNDAKSPVGGYGVDLPD 339
Query: 398 QALDLIDICYEQVGPDMLI 416
QA L E+ GPD+LI
Sbjct: 340 QAKRLKLTGLEKFGPDLLI 358
>gi|421861183|ref|ZP_16293239.1| pyrimidine reductase [Paenibacillus popilliae ATCC 14706]
gi|410829281|dbj|GAC43676.1| pyrimidine reductase [Paenibacillus popilliae ATCC 14706]
Length = 389
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 198/381 (51%), Gaps = 28/381 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
D Y++ A D+A+++ G T +P GC+I G+V G G +G AEV A++
Sbjct: 6 NDEFYMQLALDMAERAMGQTGINPAVGCVI-VRKGRVVGLGAHLRRGEGHAEVHALQMAD 64
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGATAY+ +EP +G + S L++AGI RVV+G +P + G+ V+ LR G+
Sbjct: 65 EAARGATAYVTLEPCSHYGKTSPCSLRLLEAGIKRVVIGCLDPNPAVSGRGVKLLREHGV 124
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + +++ A ++ + + A I T+ +P+ K A TLD
Sbjct: 125 EV-------VAGVLQPAAEALIEMFAKYI---TTGLPYVTLKTASTLD------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRI 281
G+IA +G + WIS++ +R+RV +R R A++ G TV DNP LT R G P R+
Sbjct: 163 GRIATYTGDSRWISNEQARERVHAMRHRHQAIMAGIGTVLTDNPSLTTRLAMPGLHPTRL 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVM 338
++ L LP +A + APTIV T A ++ L GV+V+ + ++ R ++
Sbjct: 223 IIDSRLRLPLKAKVVADRSAPTIVFTTSRADAGKREALEGHGVQVIASGDGPQVDLRHML 282
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E+ + SIL E GG L + + + +V F AP I+GGK +P + G+ +M+
Sbjct: 283 EWCGSQEIGSILLEGGGRLNGAMLEGRCVDRVVLFYAPAIVGGKASPANFAFDGVSKMND 342
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A L + +G ++ ISG+
Sbjct: 343 AYRLRHTRVDSLGDNVCISGY 363
>gi|347751720|ref|YP_004859285.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
gi|347584238|gb|AEP00505.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
Length = 370
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 28/378 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A +A+ AG TSP+P G ++ G +AG G K AE AVE G
Sbjct: 6 YMQLALHLAESVAGQTSPNPPVGSVV-VKNGTIAGMAAHLKAGEKHAERLAVEQAGPLAE 64
Query: 108 GATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA ++ +EP +G + L++ GI V + +P + G+ + LR G++V
Sbjct: 65 GAEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKV-- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ I++E + + P H ++ PF K AMT D GKIA
Sbjct: 123 -----ETGILKEQAEK---LYRPFFHFIQTKTPFVTVKTAMTAD------------GKIA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIVLTQ 285
+ + + WI+S+ +R LR R DA++VG TV DNP LT R P+RIVL
Sbjct: 163 SETRDSKWITSEEARRDARRLRSRHDAILVGIQTVLHDNPLLTTRLPHSRKNPIRIVLDT 222
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHD 343
L +P EA + DAPTI+ A ++ ++ L VEVV L RDV+ +
Sbjct: 223 HLRIPPEAKVLS-GDAPTIIFCGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
+G +++L E G + S + G + + ++APK+IGGKNAP+P G +++ AL L
Sbjct: 282 KGIMTLLVEGGAAVNGSFLKEGAVQQYIFYIAPKVIGGKNAPSPFGGHGFGKVADALPLR 341
Query: 404 DICYEQVGPDMLISGFLQ 421
EQ+GPD+ I+ +Q
Sbjct: 342 FEKVEQIGPDLKITAAVQ 359
>gi|373108062|ref|ZP_09522353.1| riboflavin biosynthesis protein RibD [Stomatobaculum longum]
gi|371650228|gb|EHO15696.1| riboflavin biosynthesis protein RibD [Stomatobaculum longum]
Length = 360
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 193/385 (50%), Gaps = 41/385 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +A++ G T+P+P G ++ GK+ GEG+ G AE A+E F R
Sbjct: 5 FMRRAISLAERGRGHTAPNPLVGAVL-VRDGKIIGEGFHAFYGGLHAERAALE--DCFQR 61
Query: 108 G-----ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G A+ Y+ +EP CH A++ A I V VG +P + G+ + ALR
Sbjct: 62 GLSPAGASLYVTLEP-CCHTGKQPPCTEAILAADIRAVFVGSSDPNPLVAGKGIAALRQG 120
Query: 161 GLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G+ V HV + +C +NAP H + +PF + KYAMTLD
Sbjct: 121 GIAVTEHV------------SESACDALNAPFFHHIRTGLPFVLLKYAMTLD-------- 160
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GK A +SG + WI+ + +R+ V R AV+VG NTV +D+P LT R GG P
Sbjct: 161 ----GKTACASGASRWITGEAAREEVHRTRAAVGAVMVGINTVLQDDPLLTCRIPGGRNP 216
Query: 279 MRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSR 335
+R+V L P ++ L ++ PT++ + + YLA+ G EV+ F ++ R
Sbjct: 217 LRVVCDSGLRTPLDSALVKTAAEVPTLLACCVSDTARHEAYLAA-GCEVLTFPGRRVDLR 275
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ RG +L E G L + +S+GL+ +V A++APK+ GGKNAP+ + G+
Sbjct: 276 ALLTSLGARGINEVLVEGGAELGWALLSAGLVQRVQAYIAPKLFGGKNAPSALGGTGVPY 335
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
A L ++ G D+ I G L
Sbjct: 336 PIDAFALKNMHIRSFGADVRIEGDL 360
>gi|433444753|ref|ZP_20409495.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus TNO-09.006]
gi|432001293|gb|ELK22171.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus TNO-09.006]
Length = 358
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 182/378 (48%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A + G TSP+P G ++ G++ G G G AEV A+ G
Sbjct: 2 DEQYMRFALQLAQSARGQTSPNPLVGAVVVKH-GEIVGFGAHLKAGEPHAEVHALRMAGE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G L++ + RVVV +P + G+ + L+ G+
Sbjct: 61 KAEGATVYVTLEPCSHYGKTPPCADLLIEKKVKRVVVTTTDPNPLVAGKGIEKLKRAGI- 119
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D+ +++E + +N H +++ P+ KYAM+LD G
Sbjct: 120 ------DITVGVLKEEADA---LNEMFFHYISTKTPYVTLKYAMSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA +G + WI+S+ +R V R DA+VVG T+ D+P LT R G G P+RIV
Sbjct: 159 KIATKTGESKWITSEDARRDVHRERRMHDAIVVGVGTILADDPSLTVRFGYEGKQPIRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
L L P AN+ APT IVV Q + + Y GV ++ + N D+
Sbjct: 219 LDTHLRTPLHANVITDQKAPTWIVVGQHVTEEQMKPY-EHAGVHIIRMN-ENKIDIPSLL 276
Query: 342 HD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
H+ R +SI E G + S +SS + +V A++AP +IGG AP+ + G M
Sbjct: 277 HELGKRNVMSIFVEGGAHVHGSFLSSRSVQQVIAYIAPMLIGGNEAPSAIGGEGFGRMMD 336
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L E++GPD+ I
Sbjct: 337 ALRLQVKHVERIGPDIKI 354
>gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 356
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 191/388 (49%), Gaps = 37/388 (9%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
SR ED Y+RRA +A + G+TSP+P GC+IA G++ GEGY G AE +A+
Sbjct: 3 SRVEDVTYMRRALSLAMRGTGYTSPNPMVGCVIARD-GEILGEGYHRRCGAPHAEREALM 61
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
+ GATAY+ +EP HG + ALV+AGI R VV +P + G+ + LRS
Sbjct: 62 SAVGGVAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILRS 121
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+ V V ++EE C +N I A + +P+ K A++LD
Sbjct: 122 AGVDVSV-------GVLEE---ECRWLNRGFIKGALAGLPWVTVKAAISLD--------- 162
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
G ++ G + WI++ TSR + LR SDAV+VG TV D+P LT R G +P+
Sbjct: 163 ---GDMSLPDGKSKWITNGTSRVKAHLLRSESDAVMVGRGTVTADDPALTVRDVPGKSPI 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
+V+ + N D I+ T+R A ++ + + +V + V+
Sbjct: 220 PVVIGGI-----DENRRVFLDDRCIIYTKRFAGLNGERVIPEKNGQV------DLETVLR 268
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G +L E GG + +S +S GL+ +V FVAPKI+G TP L +E S
Sbjct: 269 DLYGSGVRRLLVEGGGRIISSLLSDGLVDEVSLFVAPKIMGQGQTMTPGMILSSMEESMN 328
Query: 400 LDLIDICYEQVGPDMLISGFLQPIPDLM 427
L LI C Q G D+ + G DL+
Sbjct: 329 LSLIS-CRGQDG-DLWLEGVFPCSRDLL 354
>gi|224370210|ref|YP_002604374.1| protein RibD [Desulfobacterium autotrophicum HRM2]
gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2]
Length = 381
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 197/384 (51%), Gaps = 32/384 (8%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
+++ +A +A++ G+T+P+P G ++ + +V G+G+ G AEV A++ G
Sbjct: 19 SFMEQAICLAEQGRGYTAPNPMVGAVVVKNN-QVVGQGWHKGPGLAHAEVNAIDDAGDLA 77
Query: 107 RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RG+ Y+ +EP + H T +++AGI RV VG +P + G ++ L+ +G+ V
Sbjct: 78 RGSDLYVTLEPCN-HTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLKERGVAV 136
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V I A ++ L+ + + + PF V K A TLD G+
Sbjct: 137 KV-------GICRRASET--LIEDFIWYVKNDKQPFVVLKCAATLD------------GQ 175
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIV 282
+A +G + WI+++ SR V LR DA+VVG T+R DNP LT R + G P+R++
Sbjct: 176 LATRTGDSKWITNEASRKYVHRLRHWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVI 235
Query: 283 LTQTLNL-PEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L L++ P+ S A T+V R A + RG+E++ I++ +
Sbjct: 236 LDAQLSIDPDSQVFTQQSSAKTMVAISRRADPERCALFKHRGIELLVLPEKEGIIDLACL 295
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
E RG +S+L E GG + SA+++G+++K++ F APK++GG + G M+
Sbjct: 296 GEALGQRGVVSLLIEGGGRVVHSALAAGVVNKIYLFFAPKLLGGNDGVPMCRGRGPELMN 355
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
AL L + E+ D+LI G+L+
Sbjct: 356 DALGLSQVEVERFDNDILIKGYLK 379
>gi|442322166|ref|YP_007362187.1| riboflavin biosynthesis protein RibD [Myxococcus stipitatus DSM
14675]
gi|441489808|gb|AGC46503.1| riboflavin biosynthesis protein RibD [Myxococcus stipitatus DSM
14675]
Length = 387
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 199/390 (51%), Gaps = 34/390 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY GT AEV A+
Sbjct: 23 FDRAVAEFFMRIALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGYHKKAGTAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA GS RGA Y +EP D +G S A+++AG+ RV G +P + G+ V +R
Sbjct: 82 EAAGSKARGADLYSTLEPCDHYGRTPPCSLAIIEAGVRRVFCGSADPNPKVSGKGVARMR 141
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V + + EA K +N P + +P+ K A TLD
Sbjct: 142 RAGVKV------VTGVLQAEADK----LNRPFFKAINTGLPWVTLKAAATLD-------- 183
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ + +R+ V LR D ++VG NTVR+D+P+LT R G G
Sbjct: 184 ----GKLATATGDSRWVTGEKAREWVHRLRDSVDVILVGANTVRQDDPKLTTRLPGGKGK 239
Query: 277 TPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEF----D 330
+R+V+ L L P + S A TI+ T RK +++LA +GVEV + D
Sbjct: 240 DALRVVVDSHLRLSPRYSVFSQKSSARTIIATLEDPEGRKAKRFLA-QGVEVWQLRAKAD 298
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ + ++ G +L E G + S + L ++ F+APK++ G+ + +
Sbjct: 299 RVDLKALLRKLARSGLNHVLVEGGAEMYGSFLREHLADELALFLAPKLL-GREGLSWAGD 357
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG+ EM+QAL + D+ +EQ G D+L+ L
Sbjct: 358 LGVKEMAQALSVKDLTFEQHGQDILLQALL 387
>gi|375310480|ref|ZP_09775751.1| riboflavin biosynthesis protein ribD [Paenibacillus sp. Aloe-11]
gi|375077629|gb|EHS55866.1| riboflavin biosynthesis protein ribD [Paenibacillus sp. Aloe-11]
Length = 369
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 182/379 (48%), Gaps = 29/379 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A + A + G T P+P G +I + G++ G G G AE+ A+ G R
Sbjct: 10 YMHLALENARSAKGQTEPNPLVGSVI-VNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAR 68
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG A+V+AGI RVV+ +P + G+ V+ L+ G++V
Sbjct: 69 GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEV-- 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+ + + +N S+ PF K A+TLD GKIA
Sbjct: 127 --------IVGVCEQESIRMNEVFNRYIVSKRPFITIKSAVTLD------------GKIA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S+ +R+ V LR ++VG TV DNP+LT R G P+RI+L T
Sbjct: 167 TRTSESKWITSEAAREDVHRLRHEHVGILVGVQTVIHDNPQLTTRLPEGRNPIRIILDST 226
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV-----VEFDILNSRDVMEYF 341
L +P +A + +APT + T R + L GV+V D +N +++
Sbjct: 227 LRIPLDARVITDGEAPTWIFTGRAYDEAKRSQLEQLGVKVYPTQDANSDRVNLPQMLDIL 286
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S+ E G + AS + L K+ ++APK++GG+ AP + G+ MS A+
Sbjct: 287 GAAEVSSVFVEGGAEVNASFVQQDLADKLVLYIAPKLVGGRVAPGFLGGEGVSAMSDAVG 346
Query: 402 LIDICYEQVGPDMLISGFL 420
L D+ QVG D+ + G+
Sbjct: 347 LQDLSVTQVGVDLKVEGYF 365
>gi|406835396|ref|ZP_11094990.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Schlesneria
paludicola DSM 18645]
Length = 372
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 189/378 (50%), Gaps = 31/378 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A++ G P+P G ++ G++ GEG+ G AEV A++A G RG
Sbjct: 12 MRRALMLAERGRGAVEPNPVVGAIVVNDFGQILGEGWHQKHGGPHAEVHALKAAGEAARG 71
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT ++ +EP CH T A++ AGI RV+V + +P H+ G +R LR+ G+ V V
Sbjct: 72 ATLFVTLEPC-CHFGKTPPCSRAVIAAGIKRVIVAMPDPAPHVDGGGIRELRAAGIDVEV 130
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +AR+ AP + T + P+ K+AMTLD GKIA
Sbjct: 131 ------GLLEADARRMV----APFVQLITQQRPWFHAKWAMTLD------------GKIA 168
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+GH+ WI++ SR V LRGR DA+++G T D+P+LTAR G +RIV+
Sbjct: 169 TGTGHSQWITNAASRAIVHQLRGRMDAIMIGIGTALADDPQLTARPSGPRVALRIVIDSR 228
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVE--VVEFDILNSR---DVMEY 340
+ LP + L + + P +V+ A + L S GVE +V D DV +
Sbjct: 229 VRLPLTSKLVQTAREIPVLVIATADAPHERIAALQSLGVETCIVGVDAAGHASLVDVADE 288
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
R ++L E GG L G I++ AF+APK+IGG ++PTP+ G+ +
Sbjct: 289 LGRRRLTNVLVEGGGQLLGGLFDLGYINEAHAFIAPKLIGGADSPTPIGGRGLAMVPTEA 348
Query: 401 DLIDICYEQVGPDMLISG 418
L E + D+ + G
Sbjct: 349 SLESPEIELIEGDLYVHG 366
>gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus polymyxa SC2]
gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus polymyxa SC2]
gi|392304807|emb|CCI71170.1| riboflavin biosynthesis protein RibD [Paenibacillus polymyxa M1]
Length = 366
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 29/380 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A + A + G T P+P G +I + G++ G G G AE+ A+ G +
Sbjct: 7 YMRLALENARSAKGQTEPNPLVGSVI-VNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG A+V+AGI RVV+ +P + G+ V+ L+ G++V
Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+ + + +N ++ PF K A+TLD GKIA
Sbjct: 124 --------IVGVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S+ +R+ V LR ++VG TV DNP+LT R G P+RI+L
Sbjct: 164 TRTSESKWITSEAAREDVHRLRHEHVGILVGVQTVIHDNPQLTTRLPEGRNPIRIILDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EF-DILNSRDVMEYF 341
L +P +A + +APT + T R + + L GV+V E+ + +N +++
Sbjct: 224 LRIPLDARVITDGEAPTWIFTGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDIL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S+ E G + AS + GL K+ ++APK++GG++AP + G+ MS A+
Sbjct: 284 GAAEVSSVFVEGGAEVNASFVQQGLADKLVLYIAPKLVGGRSAPGFLGGEGVSAMSDAVA 343
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L D+ QVG D I G+ +
Sbjct: 344 LQDLSVTQVGVDWKIEGYFE 363
>gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
Length = 373
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 190/386 (49%), Gaps = 31/386 (8%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
+R ED Y+ R ++A++ AG SP+P G +I + G+V GEG+ G AEV A+
Sbjct: 9 ARPEDETYMWRCLELAERGAGSVSPNPMVGSVIVCA-GRVIGEGWHRQYGGPHAEVDAIA 67
Query: 101 A--GGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ S R +T Y+N+EP +G + L V+ I RVVVG +P + + G+ + L
Sbjct: 68 SVEDESLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARL 127
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R G++V V + +S+ + EA + HR PF K A TLD
Sbjct: 128 REAGIEVTVGVLEAESERLNEAFMTS--------HRKGR--PFVALKTAQTLD------- 170
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+IA S G + WI+ + SR +V LR DAV+ G +TV DN LT R G
Sbjct: 171 -----GRIATSLGASKWITGEESRCQVHRLRCIYDAVLCGASTVLADNTELTVRFCAGRQ 225
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-DILNSRD 336
P+R++L L +P E +++ + + + A + L +RG+EV + S D
Sbjct: 226 PLRVLLDPRLQVPHEFRIFNDAAKTLVFALREEADPDLVRQLEARGIEVATVGEAEGSLD 285
Query: 337 VMEYF---HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
E F H R LS+L E G LA++ + SG + K + F+APK+ GG + LG+
Sbjct: 286 FAEVFAELHKRRLLSVLVEGGSRLASAMVRSGFVDKYYVFIAPKLFGGDGLAS-FGALGV 344
Query: 394 VEMSQALDLIDICYEQVGPDMLISGF 419
A+ L + G D+L+ +
Sbjct: 345 THPDYAVKLSFSGIRRFGEDLLLEAY 370
>gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
19965]
gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
19965]
Length = 378
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 195/396 (49%), Gaps = 45/396 (11%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED ++ A D+A +T +P G ++ + GKV GEG+ G AEV A +
Sbjct: 5 EDEKWMSHALDLAKHGYWYTETNPLVGAVLVKN-GKVVGEGWHKKYGDVHAEVNAFKNCK 63
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
AT Y+ +EP CH T ++ ++Q + RVV+ +++P + G++++ L+ G
Sbjct: 64 ENTEHATLYVTLEPC-CHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+QV I+ + +N I T PF ++K AM++D
Sbjct: 123 IQV----------IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSID----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--------- 272
GKI+ +G + WISS+TSR+ V LR + A++VG T+++DNP LT+R
Sbjct: 162 -GKISCYTGDSKWISSETSRNDVHYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGE 220
Query: 273 ----GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+RI++ L+ P ++ ++ T+V+T A +K + ++G+E++
Sbjct: 221 KELMKNQRNPIRIIVDGKLSSPIDSKVFQ-DGGKTVVLTTSYADKKNVEKFKNKGIELIY 279
Query: 329 FDILNSRDV-----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
++ N V +E +G SIL E G AA A + ++ K+ ++AP IIGGK
Sbjct: 280 SNLGNDGKVDLNKSLEILARKGINSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKT 339
Query: 384 APTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
+P+ + G+ ++S A+ L +I + D + +
Sbjct: 340 SPSIIGGSGVSKISDAIKLKNISINNLNEDTIFEAY 375
>gi|345022975|ref|ZP_08786588.1| riboflavin biosynthesis protein RibD [Ornithinibacillus scapharcae
TW25]
Length = 362
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 184/374 (49%), Gaps = 31/374 (8%)
Query: 54 DIADKSA----GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGA 109
DIA ++A G T+P+P G +I ++ G G G AE+ A+ G +G
Sbjct: 9 DIALQNARAMKGQTAPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGDKAKGG 67
Query: 110 TAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLG 168
T Y+ +EP HG A+VQAGI +VV+ +P + G V+ L + G++V
Sbjct: 68 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVIATLDPNPIVAGNGVKILENAGIEV---- 123
Query: 169 EDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAAS 228
I + + +N + PF K +TLD GK+A
Sbjct: 124 ------ITGIRGQESIQMNEVFNKFIVEKKPFVTLKAGVTLD------------GKVATH 165
Query: 229 SGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLN 288
+ + WI+S+ SR+ V LR + A++VG NTV DNP LTAR G P+R+++ +L
Sbjct: 166 ARSSKWITSEESRNDVHQLRSENMAILVGINTVLDDNPSLTARIPNGRNPLRVIMDTSLK 225
Query: 289 LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVMEYFHDRG 345
+P E+N+ A T + T + + ++ L G+ V D ++ +V+ +
Sbjct: 226 VPMESNVITDKQAETWIFTSKNHNERKKQQLDKMGIRVFVTSSEDKVDPNEVVNILGEHL 285
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
S+ E GG + AS + + L+ KV + APK+IGG+NAPT + G+ M+ A++L +
Sbjct: 286 VSSLFIEGGGNIHASFLENKLVDKVVLYFAPKLIGGQNAPTFLEGNGIANMADAVELDNT 345
Query: 406 CYEQVGPDMLISGF 419
+++G D +G+
Sbjct: 346 EIKKIGKDFKFTGY 359
>gi|405374645|ref|ZP_11029024.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chondromyces
apiculatus DSM 436]
gi|397086810|gb|EJJ17899.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Myxococcus
sp. (contaminant ex DSM 436)]
Length = 387
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 198/390 (50%), Gaps = 34/390 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY GT AEV A+
Sbjct: 23 FDRAVAEFFMRIALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGYHKKAGTAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA G+ +GA Y +EP D +G S A+++AG+ RV+ +P + G+ V +R
Sbjct: 82 EAAGARAKGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVARMR 141
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
GL+V L + EEA + +N P + +P+ K A+TLD
Sbjct: 142 RAGLKV------LTGVLTEEADR----LNRPFFKMIRTGLPWVSLKAAVTLD-------- 183
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ +R V LR D ++VG NTVR+D+P+LT R GGG
Sbjct: 184 ----GKLATATGDSRWVTGPPARAWVHRLRDSVDVILVGANTVRKDDPKLTTRLPGGGGK 239
Query: 277 TPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEF----D 330
P+R+V+ L L P S A T+V T RK +++LA +GV+V +
Sbjct: 240 DPLRVVVDSHLRLSPGYTVFTQRSAARTVVATLEDPEGRKARRFLA-QGVDVWQMRQKSG 298
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ + ++ G ++ E G + AS + L + F+APK+IG + +
Sbjct: 299 QVDLKALLRRLAKEGLNHVMVEGGAEMYASFLRGHLADSLALFLAPKLIGSPGL-SWAGD 357
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG+ EM+QAL + D+ +E+ G DML+ L
Sbjct: 358 LGVKEMAQALSVKDLTFERHGDDMLLQALL 387
>gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans
MPOB]
gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophobacter fumaroxidans MPOB]
Length = 363
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 188/381 (49%), Gaps = 32/381 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A K AG TSP+P G ++ VA EG+ G AEV A+ G RG
Sbjct: 1 MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVA-EGFHEFVGGPHAEVNALRQAGDKARG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP + G + A++ +G+ VV+G+ +P +RG LRS GL+VH
Sbjct: 60 ATLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVH-- 117
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ I+E K C +N P I T+ +P+ K A+TLD G IA+
Sbjct: 118 -----AGILE---KECRALNQPFIKHVTTGLPYVTLKAAVTLD------------GAIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA---RHGGGHTPMRIVLT 284
SSG + WIS++ SR LR SD V++G T D+P L+A R P+RIVL
Sbjct: 158 SSGDSKWISNERSRKFAHHLRCISDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLD 217
Query: 285 QTLNLP-EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVME 339
L LP E A + ++ P +VV R A +K L G EV+ ++ +++
Sbjct: 218 SRLRLPLESALVRTAAEFPLMVVCGRDAPPTREKALVDAGAEVMRLSSGKGGIHLPELLR 277
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+G S+L E G T+ + + +GL F APK++G V G M+ A
Sbjct: 278 ALGSKGLCSLLVEGGATVLGAFLDNGLADDFHFFYAPKVLGDPAGTPMVRGRGRERMADA 337
Query: 400 LDLIDICYEQVGPDMLISGFL 420
+ + D+ + G D+++SG L
Sbjct: 338 VPVFDVRVRRFGEDVMLSGRL 358
>gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
Length = 360
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 189/380 (49%), Gaps = 25/380 (6%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A +A+++ G TSP+P G ++ G + G G G AEV A++ G
Sbjct: 2 KDIDYMKLALTLAEQTRGQTSPNPMVGSVVVKD-GAIVGMGAHLKAGEGHAEVNALKMAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP +G + L+ + + RVVV +P + G+ ++ LR G+
Sbjct: 61 EKAEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V +++ IE +N H ++ PF K A TLD
Sbjct: 121 TVDV--GVCEAEAIE--------LNRMFFHFIQTKRPFVTMKTASTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GK A +G + WI+ + +R V R DA++VG TV DNP LT R GG P+RI
Sbjct: 159 GKTATVTGESKWITGEEARLDVHRDRHIHDAILVGIGTVLSDNPALTTRLPNGGRNPIRI 218
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
+L + L LPE + + A T V T A + ++ L GV+V+ + +++
Sbjct: 219 ILDRHLRLPESSQVACDQAAKTWVFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKEL 278
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
R +++ E G + S I +++V +VAPK+IGGKNAPT V G+ ++QAL+
Sbjct: 279 GKRRVMTLYVEGGQEVNGSFIKERAVNQVITYVAPKMIGGKNAPTSVGGEGIPSINQALE 338
Query: 402 LIDICYEQVGPDMLISGFLQ 421
L I QVG D+ I+ ++
Sbjct: 339 LQVIDVVQVGQDIKITSLVK 358
>gi|423083656|ref|ZP_17072186.1| riboflavin biosynthesis protein RibD [Clostridium difficile
002-P50-2011]
gi|423088293|ref|ZP_17076676.1| riboflavin biosynthesis protein RibD [Clostridium difficile
050-P50-2011]
gi|357542865|gb|EHJ24900.1| riboflavin biosynthesis protein RibD [Clostridium difficile
050-P50-2011]
gi|357544416|gb|EHJ26420.1| riboflavin biosynthesis protein RibD [Clostridium difficile
002-P50-2011]
Length = 370
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 179/368 (48%), Gaps = 31/368 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+++A ++A GF +P+P GC+I + V G+GY G+ AEV A+ +
Sbjct: 7 KEKDIYYMKKAIELAKNGEGFVNPNPLVGCIIVKDSN-VIGKGYHEKFGSNHAEVNAINS 65
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+N+EP +G V ++Q I RVV+ +P + G V+ L+
Sbjct: 66 AKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDN 125
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V V + EEAR +N + ++ P + K A++LD
Sbjct: 126 NIDVTV------GILEEEARD----LNEAFFYYIKNKKPLCIVKSAVSLD---------- 165
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--P 278
GKIA S + WIS+++SR R + +++VG NTV DNP LT R P
Sbjct: 166 --GKIATKSLESKWISNESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHP 223
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNS 334
RIV+ L LP +NL + TIV T +K L VE + + ++++
Sbjct: 224 TRIVIDTHLKLPLNSNLVKDKTSKTIVFTCCKESKKLS-MLKENNVETIISPSKNNLVDL 282
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
VM + S+L E G TL S + L+ KV F++PKIIGGK+APT VS G+
Sbjct: 283 EFVMYKLGELNIDSVLVEGGATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGIN 342
Query: 395 EMSQALDL 402
+S + L
Sbjct: 343 HLSDSTQL 350
>gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
Length = 369
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 188/385 (48%), Gaps = 32/385 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
D +++ A A K G TSP+P G +I G+V G+ G AEV+A G
Sbjct: 4 NDTHFMKLAVKEARKGLGRTSPNPAVGAVIVKE-GRVVASGFHKQAGMPHAEVEAFRKVG 62
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ GAT Y+ +EP + HG + L+ ++G+ RVVVG+R+P + G L +GL
Sbjct: 63 NRAPGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKKGL 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + I+E+ C+ +N T+ PF + K A+TLD
Sbjct: 123 EV-------VTGILED---ECIRLNEAFTKFITTGRPFVIAKSAITLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMR 280
G A S+ H+ WI+++ SR V LR R DAV++G TV D+P +TAR G G P R
Sbjct: 161 GWTATSAHHSQWITNEKSRHFVHRLRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTR 220
Query: 281 IVLTQTLNLPEEANLWD-VSDAPTIVVTQ-RGARRKFQKYLASRGVEVV----EFDILNS 334
IV+ P A + S APTI+ T G R + + +GVE + + D L+
Sbjct: 221 IVVDTNFRTPAGAKVMKHDSTAPTIIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDL 280
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+M+ + SIL E G + + I + LI K + F+APKI+GG + + G
Sbjct: 281 NWLMDKLGEMSITSILVEGGSMILGAMIRAQLIDKFYVFIAPKILGGGDGIPMAAGAGPK 340
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
M +L L D + G D+LI G+
Sbjct: 341 TMDDSLGLKDTSVRRFGDDVLICGY 365
>gi|357012880|ref|ZP_09077879.1| riboflavin biosynthesis protein RibD [Paenibacillus elgii B69]
Length = 378
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 191/381 (50%), Gaps = 29/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A +AG T +P GC+I G++ G G +G AE+ A+ GS
Sbjct: 8 DEYYMNLALQLAASAAGQTGINPVVGCVI-VKEGRIVGMGAHLKRGEAHAEIHALNMAGS 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GATAY+ +EP G S L++ GI RVVV +P + G + LR+ G++
Sbjct: 67 EAAGATAYVTLEPCSHFGKTPPCSDRLIREGIKRVVVAATDPNPLVAGSGIARLRASGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + ++ + EA + ++ +R PF K A TLD G
Sbjct: 127 VTVGMLEREANALNEAFNTFIV----------TRRPFVTVKSASTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIAA +G + WI+ + SR V LR R A++VG TV D+P LT R G P+R+V
Sbjct: 165 KIAARTGDSRWITGEASRAYVHTLRHRHQAIMVGIGTVLADDPSLTTRLPVPGLHPIRVV 224
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV---ME 339
+ TL LP EA L APT+V+T A ++ L +RGVE+V+ + D+ M
Sbjct: 225 VDSTLRLPHEAKLVRDGAAPTVVLTTEQAPAARRRELEARGVEIVDCGPGPAVDLDAAMA 284
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN-APTPVSELGMVEMSQ 398
+R S+L E GG L+ + + L HK+ F+APKIIGG AP G +M +
Sbjct: 285 RLGEREIGSLLVEGGGKLSGALLERRLAHKLVLFLAPKIIGGGALAPANFDFAGFGQMRE 344
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+ L + E G D+ + G+
Sbjct: 345 AIRLERMQVETFGDDLCLIGY 365
>gi|116623314|ref|YP_825470.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Candidatus Solibacter usitatus Ellin6076]
gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Candidatus Solibacter usitatus Ellin6076]
Length = 369
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 185/375 (49%), Gaps = 29/375 (7%)
Query: 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSF 105
++Y+R A D+A K SP+P G +I GKV G G+ G AE+ A+ G
Sbjct: 3 SSYMREALDLARKGRSLASPNPLVGAVI-VRDGKVVGRGFHTYAGLHHAEIIALAQAGEQ 61
Query: 106 CRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGA YLN+EP G V AL++AGI RVV + +P + GQ LR G++V
Sbjct: 62 ARGAEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEV 121
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V+ ++ + EA K +N P +H + P K A+TLD GK
Sbjct: 122 -VMADEFAA----EAGK----LNEPFLHFMLTGRPLVTLKTAITLD------------GK 160
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP--MRIV 282
I+A + WI+S+ +R V +LR DA++ G TV D+ L+ R G +RIV
Sbjct: 161 ISAPDDNRGWITSERARAHVQELRHDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIV 220
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVM 338
+ L LP ++ + ++ + +T A + +K L SRG++V+ FD + R ++
Sbjct: 221 MDSQLRLPLDSKMARSANGDVLAITTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIV 280
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E+ YLS++ E G L SA+ ++ +VF + PKI+GG A +G
Sbjct: 281 EWLGRHRYLSLMIEAGSKLNWSALEGNVVDRVFFYYGPKILGGLEALPLAGGIGRRRRQD 340
Query: 399 ALDLIDICYEQVGPD 413
A+ L ++ Q+ PD
Sbjct: 341 AIQLHNLSIHQIPPD 355
>gi|379009946|ref|YP_005267758.1| riboflavin biosynthesis protein RibD [Acetobacterium woodii DSM
1030]
gi|375300735|gb|AFA46869.1| riboflavin biosynthesis protein RibD [Acetobacterium woodii DSM
1030]
Length = 362
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 182/376 (48%), Gaps = 32/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++RA ++A K G +P+P G +I + G GY G AE A+ A
Sbjct: 7 YMQRALELAIKGRGQVNPNPLVGAVIVKDD-VIIGSGYHEKYGGFHAERNALAACTQSAE 65
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GAT Y+ +EP CH T A+++ I RVV+G ++P + G+ + L+ G+ V
Sbjct: 66 GATLYVTLEPC-CHQGKTPPCTEAIIENKINRVVIGAKDPNPFVSGKGIEILKKHGITV- 123
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
II + C +N H ++ P+ + KYAMT+D GKI
Sbjct: 124 ---------IIGVEEEICQEINNIFFHYIKNKTPYVIMKYAMTVD------------GKI 162
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
A SG + WIS +++R V R ++VG NT+ +D+P+LT R GG P RI+
Sbjct: 163 ATYSGKSQWISGESARAAVHQTRSEVAGIMVGVNTILQDDPQLTCRVEGGKNPRRIICDT 222
Query: 286 TLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEY 340
L P + + PT + T ++K +++ G +++ D LN +++M+
Sbjct: 223 HLRTPLSSKIVASARKIPTYLATCSRDQKKIKRF-EIMGCKILAVSKKGDHLNLQELMKQ 281
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
SIL E GGTL SA+ SG+++K+ ++APKI GG A TPV G+ S+A
Sbjct: 282 LGAEEIDSILLEGGGTLNFSALKSGIVNKLQVYLAPKIFGGVAAKTPVEGPGVEMPSEAF 341
Query: 401 DLIDICYEQVGPDMLI 416
D G D+ +
Sbjct: 342 QFTDRKITIFGDDICL 357
>gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Roseburia intestinalis M50/1]
Length = 366
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 201/389 (51%), Gaps = 45/389 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+RRA ++A+ G+T +P G ++ ++ GEGY G AE +A+ + CR
Sbjct: 6 YMRRAMELAELGRGWTKTNPVVGAVLVKED-RIIGEGYHKKFGGLHAEREAL----ADCR 60
Query: 108 -------GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
GA Y+ +EP CH T A+++AGI+ V VG NPL + G +R
Sbjct: 61 SRGEDPAGADLYVTLEPC-CHYGKTPPCTQAVIEAGISHVFVGAEDINPL--VAGAGIRQ 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
LR QG+ V +++E C N H +++P+ KYAMTLD
Sbjct: 118 LREQGILV-------TEGVLQE---ECEYQNRVFFHYIQTKLPYVRMKYAMTLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276
GKIA++SG + WI+ + +R++V +R ++VG TV D+P L R
Sbjct: 162 ------GKIASASGKSQWITGEAAREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLPQTK 215
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAP-TIVVT--QRGAR-RKFQKYLASRGVEVVEFDIL 332
P+RIV TL +P ++ + ++ TI+ T Q A+ R++QKY V +
Sbjct: 216 DPVRIVCDTTLRIPLKSRIVQTAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKV 275
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ +++M G S+L E G L SA+ +G++++V+A+VAPK+ GG +A +PV+ +G
Sbjct: 276 DLKELMRQLGADGIESVLLEGGAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIG 335
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQ 421
+ A L+ +QVG D+LI+G L+
Sbjct: 336 VDYPDDAYCLVSQRVQQVGEDILIAGELK 364
>gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
eligens ATCC 27750]
gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
eligens ATCC 27750]
Length = 373
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 191/391 (48%), Gaps = 34/391 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
FS+ +D Y+RRA ++A G+ +P+P G +I ++ GEG+ G AE A
Sbjct: 8 NFSK-QDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDD-RIIGEGWHRKYGELHAERDA 65
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ GAT Y+ +EP HG ALVQAGI+RVV+G +P + G+ V+ L
Sbjct: 66 LSRCMEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYL 125
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
G++V + + E CL +N H ++ P+ V K A TLD
Sbjct: 126 EEHGIKV-------EGCVCNE---ECLAMNYVFFHYIRNKEPYVVMKTAQTLD------- 168
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---GG 274
GKIA G + WI+ + +R+ V R R A++VG TV DNP L R
Sbjct: 169 -----GKIATYKGLSKWITGEQARENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISN 223
Query: 275 GHTPMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EF 329
H P+RI+ L P ++ + PTI+ T + Y + G EV+
Sbjct: 224 PHNPVRIICDSRLRTPLDSRIVKSAGQIPTIIATCSTDSDRKSLY-ENAGCEVIITKESE 282
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
++ +++M ++G S++ E GGTL SA+ +G++++V ++APKI GG ++ T V
Sbjct: 283 QHVDLKELMNILGEKGIDSVILEGGGTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVE 342
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G+ + +A L + +G D+LI G L
Sbjct: 343 GQGIANVDEAYRLRNKTVRLLGDDILIEGEL 373
>gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
UPII 345-E]
gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
UPII 345-E]
Length = 378
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 194/396 (48%), Gaps = 45/396 (11%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED ++ A D+A +T +P G ++ + GKV GEG+ G AEV A +
Sbjct: 5 EDEKWMSHALDLAKHGYWYTETNPLVGAVLVKN-GKVIGEGWHKKYGDVHAEVNAFKNCK 63
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
AT Y+ +EP CH T ++ ++Q + RVV+ +++P + G++++ L+ G
Sbjct: 64 ENTEHATLYVTLEPC-CHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+QV I+ + +N I T PF ++K AM++D
Sbjct: 123 IQV----------IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSID----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--------- 272
GK + +G + WISS+TSR+ V LR + A++VG T+++DNP LT+R
Sbjct: 162 -GKTSCYTGDSKWISSETSRNDVHYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGE 220
Query: 273 ----GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+RI++ L+ P ++ ++ T+V+T A +K + ++G+E++
Sbjct: 221 KELMKNQRNPIRIIVDGKLSSPIDSKVFQ-DGGKTVVLTTSYADKKNVEKFKNKGIELIY 279
Query: 329 FDILNSRDV-----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
++ N V +E +G SIL E G AA A + ++ K+ ++AP IIGGK
Sbjct: 280 SNLGNDGKVDLNKSLEILARKGINSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKT 339
Query: 384 APTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
+P+ + G+ ++S A+ L +I + D + +
Sbjct: 340 SPSIIGGFGVSKISDAIKLKNISINNLNEDTIFEAY 375
>gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
Length = 369
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 182/383 (47%), Gaps = 33/383 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
++R A +A+K G SP+P G +I G + GY G AE A +A
Sbjct: 6 FMREALALAEKGMGHVSPNPMVGAVIVRD-GNIIASGYHKRYGDLHAERSAFAECDAKDI 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
CRGA Y+ +EP HG A+++ GI RV VG +P + G+ LR G++
Sbjct: 65 DCRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++++ C +N T+ +PF KYAMTLD G
Sbjct: 125 V-------TEGVLKD---ECDRLNEIFFKFITTGLPFVTLKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+ +T+R V R A++VG TV D+P LT R P+RI+
Sbjct: 163 KIACYTGKSQWITGETARKHVHRERLHHAAIMVGVGTVLADDPMLTCRIKNVRDPLRIIC 222
Query: 284 TQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEF-DILNSRDV---M 338
L P ++N+ S+ PT++V + +Y RG +V+ D S D+ M
Sbjct: 223 DTHLRTPLDSNIVRTSEKVPTLIVCGDADSGRIGEY-EKRGCKVLSLPDKNGSTDLSALM 281
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
Y S+L E GG L SA+ SG++ KV A+VAPKI GG NA TPV G+
Sbjct: 282 AYLGKEKIDSVLIEGGGMLGWSALESGIVDKVMAYVAPKIFGGSNAKTPVGGQGVAVPDD 341
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A L D ++ D+LI G ++
Sbjct: 342 AFMLEDRRITELDGDILIEGRVK 364
>gi|220931696|ref|YP_002508604.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5- phosphoribosylamino)uracil
reductase [Halothermothrix orenii H 168]
gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino)uracil
reductase [Halothermothrix orenii H 168]
Length = 371
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 195/385 (50%), Gaps = 35/385 (9%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
+Y+++ ++A K G+T+P+P G +I G++ G+G+ G AE+ A+E G
Sbjct: 11 SYMQKVLELARKGEGYTAPNPLVGAIIVRE-GEIVGQGFHQYYGGPHAEILALEEAGERA 69
Query: 107 RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGAT Y+N+EP CH T ++ +G+ RV+ + +P + G+ V+ L+ G++V
Sbjct: 70 RGATLYVNLEPC-CHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGIEV 128
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V RK +N I +S PF K A+TLD G
Sbjct: 129 EV----------GLLRKEAERLNEVYIRYISSDRPFVYLKSALTLD------------GF 166
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIV 282
IA +G + WIS++ +R LR + DAV+VG T+ +D+ LT R G G +RI+
Sbjct: 167 IATVTGDSRWISNEKARLFAHTLRHKVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRII 226
Query: 283 LTQTLNLPEEANLWD-VSDAPTIVVT-QRGARRKFQKYLASRGVEVVEFDI-----LNSR 335
L L++P +A + + S TI+V + +K+Q L +E++ + + +
Sbjct: 227 LDPELSIPPDARVINQKSRKRTILVCGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLK 286
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ H +G SIL E GG + S + GL+ KV+ F+AP I+GG + S G+ +
Sbjct: 287 ALLRILHKQGISSILVEGGGRVNYSFLKEGLVDKVYFFIAPIILGGDDGIRVFSGEGVAD 346
Query: 396 MSQALDLIDICYEQVGPDMLISGFL 420
+ +A L D+ Y ++LIS +L
Sbjct: 347 IEKAWKLRDVQYNFFDDNILISAYL 371
>gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
9485]
gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
9485]
Length = 409
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 184/383 (48%), Gaps = 45/383 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+RRA +A ++AG TSP+P G +I G++ GEGY G AEV+A+ G R
Sbjct: 10 YMRRALVLAQQAAGRTSPNPMVGAVI-VKDGRIVGEGYHRRAGEPHAEVEALRVAGEAAR 68
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GAT Y+ +EP H T A++ AGIT V I +P + G+ L + G++V
Sbjct: 69 GATMYVTLEPC-AHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLAAAGIRV- 126
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
Q + E +N P T+ PF K+AM+LD GKI
Sbjct: 127 ------QCGVCE---AEAFELNRPFFKHITTGRPFVTAKFAMSLD------------GKI 165
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHTPMR 280
A G + WIS+ +R RV LR R+DAV+VG TV D+P LT R P+R
Sbjct: 166 ATVIGQSRWISNAAARRRVHHLRNRTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAP--TIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD-- 336
IV +P A ++D D P T+V T ++ L RGV+V +L + D
Sbjct: 226 IVADSRGRVPLSAKVFD-PDLPGQTVVATTELIPADHRRALVERGVDVW---LLPASDDG 281
Query: 337 ------VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ + RG LS+L E G L + LI +V+ F+AP IIGG++AP PV
Sbjct: 282 RVRLSALFDELGRRGMLSVLVEGGSELLGACFCERLIDRVWVFMAPLIIGGQHAPGPVGG 341
Query: 391 LGMVEMSQALDLIDICYEQVGPD 413
G +SQA L + E + D
Sbjct: 342 SGYALLSQAARLGRMHVELIPAD 364
>gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli
95/1000]
gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli
95/1000]
Length = 365
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 187/384 (48%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+R A + A K GFTSP+P G +I +V G GY G AE+ A + G
Sbjct: 5 YMRMAIEEAKKGEGFTSPNPLVGAVIVKDD-RVIGIGYHKKYGENHAEINAFLNAKENGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA+ Y+ +EP +G A+++ + +V++G + + G ++ L+ G++
Sbjct: 64 DVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + C +N + +++PF V KYAMT+D G
Sbjct: 124 VVVN----------VLEEECRKLNEVFFYYIANKIPFVVMKYAMTMD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 162 KIATVSGKSKWITSEKTREHSHRFRNKYSAIMVGINTVIEDNPMLNCRLPNTRNPIRIIL 221
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L + ++N+ S D T + T G +K K L GVE+++ + N R ++M
Sbjct: 222 DSSLKISLDSNICKTSKDIKTFIATVSGDEKKI-KELEGLGVEIIKTESDNGRVSLKELM 280
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ S+ E G +L AS + L++K ++APKI GG A +P+ G+ E
Sbjct: 281 KILGEEKNIDSVYVEGGASLHASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGEGIDEPD 340
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A+ L+ ++ D+ + +L+
Sbjct: 341 NAIRLVGNSITKIEEDLFLEYYLK 364
>gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium
hydrogeniformans]
gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium
hydrogeniformans]
Length = 381
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 195/400 (48%), Gaps = 41/400 (10%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
KFS D Y+ RA +IA K G SP+P G ++ G++ GEGY G AEV A
Sbjct: 4 KFS-ITDIRYMARALEIAKKGEGSASPNPMVGAVL-VKNGEIIGEGYHKFYGGPHAEVYA 61
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
++ G A YL +EP +G L+++GI R V+ + +P + G+ + L
Sbjct: 62 LKEAGQNANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELL 121
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G++V + + E+A+ +N + TS P+ K A TLD
Sbjct: 122 KEAGIEVEL------GLMAEKAKD----LNEVFLKYITSDYPYVYLKKAQTLD------- 164
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGG 275
G IA+S+GH+ WI+++ +R LR + DA++VG TV D+P LT R GG
Sbjct: 165 -----GFIASSTGHSKWITNEKARLEGHKLRHKVDAIMVGIGTVLADDPSLTTRLEEQGG 219
Query: 276 HTPMRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGA--------RRKFQKYLASRGVEV 326
+R++L L++P +A + + S A T+++ + K +K LA V++
Sbjct: 220 IDSLRVILDPELDMPLDAKIINQESTASTLLIASEASLESNSAALMEKKEKLLAKNNVDI 279
Query: 327 V-----EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
+ E LN ++ HD SIL E G L+ S ++ GLI K + F+APKI GG
Sbjct: 280 IAVPLEEEGFLNLDFILRQLHDLNISSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGG 339
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
+ + G MS + D+ + +G ++L+ G LQ
Sbjct: 340 DDGISSFCGQGPKLMSDSKDIKILDRRFLGDNILLIGELQ 379
>gi|451982389|ref|ZP_21930705.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Nitrospina gracilis 3/211]
gi|451760395|emb|CCQ91992.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Nitrospina gracilis 3/211]
Length = 366
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 33/369 (8%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G +I V GEG+ + G AE++A++ G+ RGA + +EP C
Sbjct: 22 GRTSPNPLVGAVIVRGD-TVVGEGFHHCAGKPHAEIEALKKAGNRARGADMIVTLEPC-C 79
Query: 121 HGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
H T A++ AGI RV VG+++P ++G+ R L++ G++V + I+
Sbjct: 80 HQGRTPPCTEAVIAAGIRRVFVGMQDPNPLVKGKGSRRLKNAGIEV-------TTGIL-- 130
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
RK C N + + +PF K A++LD GKIA +SG + WI+
Sbjct: 131 -RKECERQNEVFVKYIRTGLPFVTLKAAVSLD------------GKIATNSGDSKWITGP 177
Query: 239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG--GGHTPMRIVLTQTLNLPEEANLW 296
+R V LR R DA+V G TV +D+P+LT R G G P+R+VL +P +A ++
Sbjct: 178 EARKVVHQLRNRVDAIVAGSGTVLKDDPQLTTRLGKRAGRNPVRVVLDSQGLVPMKARVF 237
Query: 297 DVSDAPTIV-VTQRGARRKFQKYLASRGVEV----VEFDILNSRDVMEYFHDRGYLSILW 351
+ +D ++ VT R A + L GVEV + ++ + VM + G +L
Sbjct: 238 ENTDRDRVIYVTTRLAPVARLRKLEKAGVEVWTERAGREGVSLKRVMRRLAENGLTHVLI 297
Query: 352 ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG 411
E G L A+A+ + ++ KV FVAP +IGG A + + G+ ++ A+ + VG
Sbjct: 298 EGGSRLNAAALKARIVDKVLFFVAPLLIGGNGAVSVIGGPGIQKLKDAMHIQKPTLTPVG 357
Query: 412 PDMLISGFL 420
D ++ G+L
Sbjct: 358 RDWMVEGYL 366
>gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH
391-98]
gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH
391-98]
Length = 370
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 187/378 (49%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A +AG TSP+P G ++ + GK+ G G G + AEV A+ G+
Sbjct: 3 DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKN-GKIVGMGAHLRAGEEHAEVHALRMAGA 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G + L+Q + RVV+ NPL + G + L G
Sbjct: 62 HAKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPL--VAGNGKKKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V + I+EE +S +N H ++ PF K AM+LD
Sbjct: 120 IYV-------TTGILEEEARS---LNRYFFHYMKTKRPFVTLKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMR 280
GKIA ++G + WI+ +RD V R DA++VG NT+ DNP LT R GG P+R
Sbjct: 159 -GKIATTTGESKWITGDAARDDVHHYRHTHDAILVGVNTIIADNPSLTTRLPNGGKNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVM 338
I+L L P +++ APT ++ + ++ S V V + + + +D++
Sbjct: 218 IILDTHLRTPLLSHVVTDRVAPTWIIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G +++
Sbjct: 278 SLLGEKQILSLFVEGGQSIHASFLEANGFNEIVTYISPKLIGGKDAPTWFGGTGFIQLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L Q+G D+ +
Sbjct: 338 ALSLQFQEITQIGNDIKV 355
>gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
gi|167654296|gb|EDR98425.1| riboflavin biosynthesis protein RibD [Anaerostipes caccae DSM
14662]
Length = 354
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 192/379 (50%), Gaps = 39/379 (10%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A K G T+P+P G +I G+V GEG+ A G AE A+++ +G
Sbjct: 1 MRRAIELAQKGTGHTNPNPLVGAVIVKD-GQVIGEGFHEAYGGLHAERNALKSCTEDPKG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP CH T A++++GI +V VG +P + G ++ LR G++V
Sbjct: 60 AELYVTLEPC-CHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKV-- 116
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ I++E C +N + T P+ KYAMTLD GKIA
Sbjct: 117 -----ETGILDE---ECRELNDIFFYYITHDTPYVALKYAMTLD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+G + WI+ +R+ V LR R A++ G +TV D+P L AR GG+ P+R++
Sbjct: 157 VKTGESKWITGGEAREHVQFLRHRYAAILTGIHTVIGDDPMLNARIEGGNNPVRVICDSR 216
Query: 287 LNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVV-------EFDILNSRDVM 338
L +P + + + PTI+ R + + L + G V+ + D+L ++M
Sbjct: 217 LRIPISSKIVQSAKVIPTIIAACE--RNEKAQRLEALGCRVLICPGKDGKTDLL---ELM 271
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
S+L E G + S I +G ++KV+AF+APKI GG+ A +PV G+ ++S
Sbjct: 272 RILRKEKIDSVLVEGGADINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISD 331
Query: 399 ALDLIDICYEQVGPDMLIS 417
AL L + G D+L+
Sbjct: 332 ALLLNGPEITRFGEDLLLE 350
>gi|339498807|ref|YP_004696842.1| riboflavin biosynthesis protein RibD [Spirochaeta caldaria DSM
7334]
gi|338833156|gb|AEJ18334.1| riboflavin biosynthesis protein RibD [Spirochaeta caldaria DSM
7334]
Length = 368
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 35/382 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV----EAGG 103
+++ A D+A K G +P+P G +I GKV G G+ G AEV A+ +AG
Sbjct: 5 FMKMALDLAQKGIGRVNPNPLVGAVIVKH-GKVIGCGFHEFYGGPHAEVMAINDAIQAGC 63
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ T Y+ +EP CH T S ++++GI VVVG+ +P + G+ + L++ G
Sbjct: 64 TDFASTTLYVTLEPC-CHFGKTPPCTSLIIKSGIPSVVVGMEDPNPLVSGKGITILKNAG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V Q ++E+A C +N I T++ P+ + K M+LD
Sbjct: 123 IEV-------QVGVLEDA---CRKLNPVFITYITTKKPYVLLKSGMSLD----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA +G + WI+ + SR V LR + AV+ G TV D+P LT R G P+RI
Sbjct: 162 -GKIATVTGDSKWITCEESRKDVHRLRSQYMAVMCGIGTVLSDDPELTVRIIEGKNPIRI 220
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVME 339
+ L +P E+N+ + + TI+ T + K + L + GVE++ + + R D+ E
Sbjct: 221 ITDSHLRIPLESNIVRTARNIRTIIATTENSDSKKAEKLTTMGVELIYTKLRDGRVDLQE 280
Query: 340 YFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
G + SIL E GGTLA SA+ + ++H V +++P ++GG A T ++ G +
Sbjct: 281 LISILGTMNIDSILLEGGGTLAFSALKAEIVHAVRFYISPILLGGVKAKTVIAGDGFSTL 340
Query: 397 SQALDLIDICYEQVGPDMLISG 418
S A + I + G D++I G
Sbjct: 341 SNAFKIEHIHVDFCGSDIVIQG 362
>gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
Length = 369
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 189/390 (48%), Gaps = 31/390 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R +D Y+RRA +A + G TSP+P GC+I VA EGY + G AEV+A++
Sbjct: 6 RRDDEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVA-EGYHRSYGMPHAEVEALQR 64
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+N+EP G + L ++ ++RVV+G+ +P + G+ V LRS
Sbjct: 65 AGDGAKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSN 124
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
L ++ ++E+ C VN I R + P+ K A T+D
Sbjct: 125 QLIT-------ETGVLED---ECKWVNRGFIRRVRDQRPWFTLKSASTID---------- 164
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
G+IA +G + WI+S+ SR++ LR D ++VG TV RD+P LT RH G +P+R
Sbjct: 165 --GQIALPNGESQWITSEESRNKAHLLRAEHDGIMVGVGTVLRDDPSLTVRHTVGRSPIR 222
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME- 339
IV+ L P +A + D I+ + L+ G E+ N+R +
Sbjct: 223 IVVDTMLRTPADAAILR-GDGAIILAGISAQKMGKHDQLSKAGAEIYYLPEKNNRVDLRS 281
Query: 340 ---YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+RG S+L E G TLA++ I LI + F+AP I+G + E+ + +
Sbjct: 282 AAIILGERGLNSVLVEGGATLASAFIQEKLIDGLSLFIAPTIMG--QGISLFKEIVVPSL 339
Query: 397 SQALDLIDICYEQVGPDMLISGFLQPIPDL 426
+ + + + G D+ I G + PDL
Sbjct: 340 DKLIRFRVLNMSRTGRDIWIEGVPECSPDL 369
>gi|407775028|ref|ZP_11122324.1| riboflavin biosynthesis protein ribD [Thalassospira profundimaris
WP0211]
gi|407281976|gb|EKF07536.1| riboflavin biosynthesis protein ribD [Thalassospira profundimaris
WP0211]
Length = 373
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 193/393 (49%), Gaps = 35/393 (8%)
Query: 33 SAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTK 92
+AP F + +D +++ A ++ + G P+P+ GC++ +S G + G G+ G
Sbjct: 2 TAPAFSE----DDRHFMQVALSLSKRGLGNVWPNPSVGCVLVSSDGTIVGRGHTQPGGRP 57
Query: 93 PAEVQAVEAGGSFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRG 151
AE A++ G RGATAY+ +EP G + L++AG++RVV + +P + G
Sbjct: 58 HAERVALDMAGPLARGATAYVTLEPCSHVGKTPPCATGLIEAGVSRVVSALTDPDPRVSG 117
Query: 152 QAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDV 211
+ + L G+QV V +EAR+ VN + +A PF K A TLD
Sbjct: 118 RGHKMLGDAGIQVDV------GLYADEARR----VNEGFLCKAERSRPFVTLKLASTLDA 167
Query: 212 ILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR 271
+ A +SG + WI+ +R+ LR DA++VG TV D+P LT R
Sbjct: 168 ------------RSATASGESQWITGACAREAGHMLRANHDAILVGAKTVIADDPSLTCR 215
Query: 272 HGG--GHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVE 328
G +P+R++L + ++P A L + D PT +VT + + V+V+
Sbjct: 216 LSGRDHQSPVRVILDRAGDVPFAARLVQTADDVPTWLVTADKNFAELSEKFEKTAVKVIS 275
Query: 329 F----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
D L+ DV+ D G +L E GG LAA I +G++ ++ FVAP +IGG +
Sbjct: 276 AGCAGDHLDLHDVLRKLADEGLTRVLVESGGNLAAGLIRAGVVDRIIHFVAPSVIGG-DG 334
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
+++LG+ +++ A +VG D+ ++
Sbjct: 335 KAMIADLGLNQLADAPHFKRTSVREVGADIAVT 367
>gi|350268520|ref|YP_004879827.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Oscillibacter valericigenes Sjm18-20]
gi|348593361|dbj|BAK97321.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Oscillibacter valericigenes Sjm18-20]
Length = 367
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 195/386 (50%), Gaps = 33/386 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED +R A +A++ G T+P+P G ++ GK+ G+GY G AE +A+ +
Sbjct: 2 EDRESMRLALKLAERGRGRTNPNPVVGAVV-VKDGKIIGQGYHERCGELHAERRALASCT 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGAT Y+ +EP CH A+++AGI RVVVG +P + G+ V LR+ G
Sbjct: 61 ESPRGATLYVTLEPC-CHFGRQPPCTDAILEAGIARVVVGSNDPNPLVAGKGVERLRANG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V ++ I+++ C +N H + P+ V KYAMT+D
Sbjct: 120 VEV-------EAGILKD---ECDALNQVFFHFICTHTPYMVMKYAMTMD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA +G + W++ + +R RV RGR A++ G TV DNP LT R G P+R+
Sbjct: 159 -GKIATRTGASRWVTGEIARQRVHADRGRYAAIMAGIGTVLADNPLLTCRAENGKNPVRV 217
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRD 336
V L +P E+ + + + PTI+ R + + L + G V E ++ R
Sbjct: 218 VCDTHLRIPLESQIVRTAGEVPTILAAGRPTPER-KVALEAAGCRVWELPGREGHVDLRA 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M+ + S+L E G L +A+ +G++ KV ++APK+ GG +PV LG+
Sbjct: 277 LMDRLGAQQLDSVLLEGGAALNGAALEAGVVQKVQIYLAPKLFGGAGK-SPVGGLGVELP 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQP 422
+QA+ L + ++G D L+ + P
Sbjct: 336 AQAVRLGNTAVTRLGDDFLLESEVLP 361
>gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
Length = 387
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 191/393 (48%), Gaps = 40/393 (10%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY GT AEV A+
Sbjct: 23 FDRAVAEFFMRIALEEAAKGLGRTSPNPAVGAVLVKG-GRIIARGYHKKAGTAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA G RGA Y +EP D +G S A++ AG+ RV+ G +P + G+ V L+
Sbjct: 82 EAAGPRARGADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLK 141
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G V VL LQ K +N P T+ +P+ K A+TLD
Sbjct: 142 KAG--VEVLTGVLQ--------KDADQLNQPFFKVMTTGLPYVTLKAAVTLD-------- 183
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ + +R V LR + D ++VG NTVRRDNP+LT R GGG
Sbjct: 184 ----GKLATATGDSRWVTGEAARHWVHQLRDKVDVILVGANTVRRDNPQLTTRLPGGGGK 239
Query: 277 TPMRIVLTQTLNLPEEANLW-DVSDAPTIVVT----QRGARRKFQKYLASRGVEVVEFDI 331
P+R+V+ L L ++ S A I+ T Q R+F + GVEV +
Sbjct: 240 DPVRVVVDSHLRLKSTHTVFTQRSPARVILATLEDPQGAKARRFTRL----GVEVWQMPS 295
Query: 332 LNSRDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
+ ++ R G+ +L E G + S + L + F+APK+IG +
Sbjct: 296 RQGQVALKALLGRVAQEGFNHVLVEGGAEIYGSFLRERLADSLALFLAPKLIGSQGLSWS 355
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+LG+ M+ A L D+ ++Q+G D+L+ L
Sbjct: 356 -GDLGVKLMANAFSLKDLTFQQLGEDLLLQARL 387
>gi|354582600|ref|ZP_09001501.1| riboflavin biosynthesis protein RibD [Paenibacillus lactis 154]
gi|353198892|gb|EHB64358.1| riboflavin biosynthesis protein RibD [Paenibacillus lactis 154]
Length = 367
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 196/384 (51%), Gaps = 30/384 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A D+A+++ G T +P GC++ G +AG G +GT AEV A+ GS
Sbjct: 6 DEFYMSLALDMAERAQGQTGINPVVGCVVVKD-GALAGVGAHLERGTPHAEVHALNMAGS 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+T Y+ +EP +G S L+ G+ RVVV ++P + G+ ++ LR+ G++
Sbjct: 65 KAAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACQDPNPLVAGRGLQMLRAAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + ++EE + +N T+ +PF K A TLD G
Sbjct: 125 V-------TTGVLEE---RAVRLNEAFNKFITTGLPFVTLKTASTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA+ +G + WIS++ SR+ V LR R ++ G TV D+P LT R G P+RI+
Sbjct: 163 KIASKTGDSKWISNEVSRELVHTLRHRHQGIMAGVATVIADDPSLTTRLRVEGLQPVRII 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+ L +P + A T+V+ A + + L RGV+++ D+
Sbjct: 223 VDSQLRIPLNCRVVSDGAAKTVVLATELADKAKRTALEERGVQILVCGPGPRVDLQAALM 282
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ G + SIL E GGTL+ S + + L+ ++ F+APKIIGG +AP G MS+A
Sbjct: 283 ELGRMGIASILVEGGGTLSGSLLENKLVDRIIQFIAPKIIGGFDAPGNYMFSGYELMSEA 342
Query: 400 LDLIDICYEQVGPDMLISGFLQPI 423
++L + +++G ++ ++G QP+
Sbjct: 343 IELTGLETQRLGDNIYVTG--QPV 364
>gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63]
gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
Length = 370
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 178/368 (48%), Gaps = 31/368 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+++A ++A GF +P+P GC+I + G+GY G+ AEV A+ +
Sbjct: 7 KEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKD-DYIIGKGYHEKFGSNHAEVNAINS 65
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+N+EP +G V ++Q I RVV+ +P + G V+ LR
Sbjct: 66 AKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLRDN 125
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V V + EEAR +N + ++ P + K A++LD
Sbjct: 126 NIDVTV------GTLEEEARD----LNEVFFYYIKNKRPLCIVKSAVSLD---------- 165
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--P 278
GKIA S + WIS+++SR R + +++VG NTV DNP LT R P
Sbjct: 166 --GKIATKSLESKWISNESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHP 223
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNS 334
RIV+ L LP +NL + TIV T +K L VE + + ++++
Sbjct: 224 TRIVIDTHLKLPLNSNLVKDKTSKTIVFTCCKESKKLS-MLKENNVETIISPSKNNLVDL 282
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
VM + S+L E G TL S + L+ KV F++PKIIGGK+APT VS G+
Sbjct: 283 EFVMYKLGELNIDSVLVEGGATLNDSLFRNRLVDKVKLFLSPKIIGGKDAPTFVSGEGIN 342
Query: 395 EMSQALDL 402
+S + L
Sbjct: 343 HLSDSTQL 350
>gi|389572237|ref|ZP_10162323.1| riboflavin biosynthesis protein RibD [Bacillus sp. M 2-6]
gi|388428081|gb|EIL85880.1| riboflavin biosynthesis protein RibD [Bacillus sp. M 2-6]
Length = 360
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 188/378 (49%), Gaps = 27/378 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A A G TSP+P G +I S G++ G G G AE+ A+ G
Sbjct: 3 DDVFYMKLAIANAKAMKGQTSPNPLVGAVIVQS-GEIVGIGAHMKAGEPHAEIHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP HG A++ +G+ +V++ ++P + G+ + L+ G+
Sbjct: 62 EKAKGADMYVTLEPCTHHGKTGPCTEAIISSGVKKVLIATQDPNPVVAGKGIAFLKKAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V Q +EA + +NAP H + +P+ + K A+++D
Sbjct: 122 EVE------QGICKQEADR----LNAPFFHLMQTNLPYVILKSAISID------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ +R V LR +DAV+ G T+ +D+ L + H P+R++
Sbjct: 160 GKIATADQESKWITGIEARTEVQRLRQEADAVLTGVETIIQDDAGLIVKDSFNHQPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L TL +P A A TI+ T + + + L +G +V + D+ + H
Sbjct: 220 LDSTLRIPLHAKCLTDHRAETIICTSQDYDHQKYQQLIQKGHQVFVTSGEHRTDLQDVLH 279
Query: 343 ---DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
R +S+L E GG+++AS + + L+++ ++AP +IGGK+APT G+ ++ +A
Sbjct: 280 MLKKRSVMSVLVEAGGSVSASFLEASLVNEAVIYMAPLLIGGKDAPTFFEGEGVKKLKKA 339
Query: 400 LDLIDICYEQVGPDMLIS 417
+ DI Y VG D+ ++
Sbjct: 340 IRPADIEYSMVGKDLKMT 357
>gi|357054136|ref|ZP_09115227.1| riboflavin biosynthesis protein RibD [Clostridium clostridioforme
2_1_49FAA]
gi|355385021|gb|EHG32074.1| riboflavin biosynthesis protein RibD [Clostridium clostridioforme
2_1_49FAA]
Length = 367
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 183/385 (47%), Gaps = 32/385 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A+K G SP+P G +I G++ G+G G AE A+ +
Sbjct: 3 DTDYMSIALKLAEKGCGKVSPNPMVGAVIVKE-GRIIGQGSHLCFGGPHAERNALASLTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP CH T A+V++GI RVV+G R+P + G+ L + G+
Sbjct: 62 SPRGATLYVTLEPC-CHHGKTPPCTDAIVESGIRRVVIGTRDPNPMVSGKGTGVLITNGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V I+EE C +N H + P V KYAMTLD
Sbjct: 121 EV-------TEGILEE---ECRELNHVFFHYIKTGRPLVVMKYAMTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK A +GH+ WI+ + SR RV + R R AV+ G T+ D+ LT R P+RI+
Sbjct: 159 GKTATRAGHSRWITGERSRQRVHEDRSRYFAVMCGVGTILADDSLLTCRLPAARNPVRII 218
Query: 283 LTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L P ++ + S A TI+ T R+ + Y +G E++ R +
Sbjct: 219 CDSRLRTPPDSRVVTTCSQARTILATCCPDRKAWLPY-EEKGCEILLLPPREGRVDLNAL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
E+ G S+L E GG L SA+ G++++V A+++P++ GG A TPV G+
Sbjct: 278 TEHLGQMGIDSVLLEGGGALNWSALDQGIVNRVQAYISPRLFGGATAKTPVGGSGVEFPY 337
Query: 398 QALDLIDICYEQVGPDMLISGFLQP 422
Q L +G D+LI G L P
Sbjct: 338 QGYSLGKTKITALGQDILIEGELAP 362
>gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 370
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 187/381 (49%), Gaps = 36/381 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A++R A +A + G P+P GC+I + G+V G G+ G AE +A+ G+
Sbjct: 10 DRAHMRAALALAKRGLGNVWPNPAVGCVI-VADGRVVGRGWTQPGGRPHAETEALAMAGA 68
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RG TAY+ +EP HG ALV AGI RVVV I++P + G+ + L++ GL
Sbjct: 69 LARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQAAGLS 128
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + EEA + +NA + + T P K A TLD G
Sbjct: 129 V------VTGVMAEEAAE----LNAGFLSKVTRGRPLVTVKLATTLD------------G 166
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRI 281
+IA G + WI+ +R LR +DA++VG TV D+P LT R G +P+RI
Sbjct: 167 RIATHGGESRWITGAAARQAGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRI 226
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRD 336
V+ L LP + L + D T V+TQ GA + ++ GV+VVE L+
Sbjct: 227 VVDGRLRLPLTSKLVSTANDVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQ 286
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
M + G +L E G L A+ + GL+ ++ F A +++GG P VS G+ +
Sbjct: 287 AMRVLAESGITRVLVEGGAHLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVS-FGVDHL 345
Query: 397 SQ--ALDLIDICYEQVGPDML 415
SQ + +D+ ++G D++
Sbjct: 346 SQMPGFECVDV--RRIGADLV 364
>gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
Length = 370
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 180/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVYALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAILLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + SR V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEESRADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT + G +K S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 338 ALSLEIQEMKQIGDDIKI 355
>gi|402813400|ref|ZP_10862995.1| riboflavin biosynthesis protein RibD [Paenibacillus alvei DSM 29]
gi|402509343|gb|EJW19863.1| riboflavin biosynthesis protein RibD [Paenibacillus alvei DSM 29]
Length = 366
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 182/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A A G T P+P G +I ++ G G G AE+ A+ G R
Sbjct: 8 YMRLAIQNAKAMKGQTDPNPLVGSVIVNEN-RIVGIGVHMKAGEPHAEIHAIRMAGELTR 66
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP +G + A+V+AGI +VV+ +P + G+ V LR G++V
Sbjct: 67 GATIYVTLEPCSHYGRTGPCAVAIVEAGIKKVVIAALDPNPLVSGRGVDILREAGIEV-- 124
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I + +N +PF K A+T+D GKI
Sbjct: 125 --------ITGVCEEESFQINEVFNKFIVQHIPFVTLKTAITMD------------GKIN 164
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ S + WI+S+ +R+ V LR ++ A++VG NTV D+P LT R G P+R+VL +
Sbjct: 165 SYSSDSKWITSEAAREDVHVLRNQNAAILVGVNTVLTDDPELTTRLPNGRNPIRVVLDSS 224
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV---EFDILNSRDVMEYFHD 343
L LP A + +APT V T + + L GV+V + +N +V++
Sbjct: 225 LRLPLNAKVVIDGEAPTWVFTTTSHDIEKRAALEKAGVKVFVTEQTGRVNPIEVIQLLGR 284
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
S+L E GG + A+ + LI K ++APK+IGG+NA + + G+ +MS A++L
Sbjct: 285 EMISSVLIEGGGEINAAFFENKLIDKFIVYMAPKLIGGRNASSFLGGAGVEKMSGAVELH 344
Query: 404 DICYEQVGPDMLISGF 419
++ + +G D G+
Sbjct: 345 NVSVQPLGKDFKFVGY 360
>gi|423091599|ref|ZP_17079720.1| riboflavin biosynthesis protein RibD [Clostridium difficile
70-100-2010]
gi|357555081|gb|EHJ36774.1| riboflavin biosynthesis protein RibD [Clostridium difficile
70-100-2010]
Length = 370
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 33/383 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+++A ++A GF +P+P GC+I ++ + G+GY G+ AEV A+ +
Sbjct: 7 KEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKASN-IIGKGYHEKFGSNHAEVNAINS 65
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+N+EP +G V ++Q I RVV+ +P + G V+ L+
Sbjct: 66 AKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDN 125
Query: 161 GLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+ V V + ED EAR +N + ++ P + K A++LD
Sbjct: 126 NIDVTVGILED-------EARD----LNEAFFYHIKNKRPLCIVKSAVSLD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-- 277
GKIA S + WIS+++SR R + +++VG NTV DNP LT R
Sbjct: 166 ---GKIATKSLESKWISNESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSH 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILN 333
P RIV+ L LP +NL + TIV T K L VE + + ++++
Sbjct: 223 PTRIVIDTHLKLPLNSNLVKDKTSKTIVFTCCKESIKLS-MLKENNVETIISPSKNNLVD 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
VM + S+L E G TL S + L+ KV F++PKIIGGK+APT VS G+
Sbjct: 282 LEFVMYKLGELNIDSVLVEGGATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGI 341
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
+S + L + D+LI
Sbjct: 342 NHLSDSTQLTINNVTLIDGDILI 364
>gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Thermaerobacter marianensis DSM 12885]
gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermaerobacter marianensis DSM 12885]
Length = 427
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 200/413 (48%), Gaps = 37/413 (8%)
Query: 21 GKKEMAPSLVANSAPVFCKFSR--AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTG 78
G + P+ + P C+ D A++RRA +A ++ G T P+P G +I G
Sbjct: 9 GGRGAPPAGEPSGVPAACRRDDWPVTDRAFMRRALRLASRARGRTHPNPMVGAVI-VRDG 67
Query: 79 KVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGIT 136
+V GEG+ G AE++A+ G RGAT Y+ +EP CH T A++ AG+
Sbjct: 68 EVVGEGFHRRAGEPHAEIEALRMAGERARGATLYVTLEP-CCHYGRTPPCTGAIISAGLR 126
Query: 137 RVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATS 196
RVVV + +P + G+ + AL + G++V V E+ ++ + EA ++HR
Sbjct: 127 RVVVAMVDPDPRVAGRGIAALAAAGIEVAVGLEEEAARRLNEAY---------IVHRRLG 177
Query: 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVV 256
R P KYAMTLD G+IA + G + W++ +R LR R DA++V
Sbjct: 178 R-PMVTAKYAMTLD------------GRIATARGDSRWVTGIRARRWAHRLRDRVDAILV 224
Query: 257 GGNTVRRDNPRLTAR-HGGGHTPMRIVLTQTLNLPEEANLWDV---SDAPTIVVTQRGAR 312
G TV D+P LT R H GG P+RIVL P A + V S APT V GA
Sbjct: 225 GVGTVLADDPLLTVRLHPGGRDPLRIVLDSHARTPPTARVVQVARQSPAPTWVAVTPGAP 284
Query: 313 RKFQKYLASRGVEVVEFDI-----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLI 367
+ L G VV ++ ++ G + +L E G ++ + + L+
Sbjct: 285 AARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGASVHGAFFGARLV 344
Query: 368 HKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+V A VAPK+ GG AP P++ G+ M+ A L + ++G D LI G+L
Sbjct: 345 DRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSDWLIGGYL 397
>gi|402835283|ref|ZP_10883854.1| putative riboflavin biosynthesis protein RibD [Mogibacterium sp.
CM50]
gi|402275245|gb|EJU24403.1| putative riboflavin biosynthesis protein RibD [Mogibacterium sp.
CM50]
Length = 424
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 206/436 (47%), Gaps = 72/436 (16%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+RRA +A K G+ +P+P G +I S G++ GEGY G AE A+ +
Sbjct: 13 DKEYMRRAIGLAKKGEGWVNPNPKVGAVIVKS-GQIIGEGYHVKCGQMHAERNAIASLRE 71
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ MEP CH T +A+++ I+RVV+G ++P + G+ V+ LR G+
Sbjct: 72 SAEGATLYVTMEPC-CHYGKTPPCTAAIIENKISRVVIGSKDPNPKVAGKGVKILREAGV 130
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ ++EE C +N H T+ P+ KYAMT D
Sbjct: 131 EV------VEDFLMEE----CDALNPIFFHYITTGRPYVRLKYAMTAD------------ 168
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + W++ + +V ++R +V+VG +TV D+ L R G P+RIV
Sbjct: 169 GKIATKTGASRWVTGPEAIHKVHEMRHECMSVMVGVDTVIADDSMLNCRLQDGRDPIRIV 228
Query: 283 LTQTLNLPEEANL---WDVSDAPTIVVTQ----------------------------RGA 311
L +P +A L D D+ TI+V +
Sbjct: 229 CDSKLRIPSDAQLVRTADEYDSETIIVCSVEGLPMGEIRVSEKAPLYMDDENTNPPAKAL 288
Query: 312 RRKF--------QKYLASRGVEVVEFDILNSR-DVMEYFHDRGYL---SILWECGGTLAA 359
+KF L +GV + F + R D++ G L S+L E GG L
Sbjct: 289 AKKFGGAEFTKKAAKLNEKGVRLFNFPGHDGRVDLIMLLQYLGKLDIDSLLLEGGGNLNE 348
Query: 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
SA+ +G+I++V FVAPK+ GGK A +PV LG+ + A E++G D++I+
Sbjct: 349 SALRAGIINEVRIFVAPKVFGGK-AKSPVEGLGVEHPNMAYKFSFDDVERIGSDLMIT-- 405
Query: 420 LQPIPDLMPVIPSEDE 435
+ I +L IP +++
Sbjct: 406 CKRIDNLGTYIPEDED 421
>gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein,
5-amino-6-(5-phosphoribosylamino)uracil reductase,
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. VS]
gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein,
5-amino-6-(5-phosphoribosylamino)uracil reductase,
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. VS]
Length = 365
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 193/387 (49%), Gaps = 41/387 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A + G SP+P+ G +I + G+V G+G+ G AE+ A++ +
Sbjct: 3 YMSQALSLAKLAIGQVSPNPSVGAVIVKN-GEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP CH T +++++GI V + NPL + G+ + L + G++
Sbjct: 62 GAALYVTLEPC-CHQGRTPPCTGSIIESGIKEVYIATLDDNPL--VSGKGKKELENAGIK 118
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
VH+ + EAR+ +N T+ +PF KYAM+LD G
Sbjct: 119 VHL------GMMEREARQ----MNEAYFKHITTGMPFVTAKYAMSLD------------G 156
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT- 277
K +G + WIS++ SR +R SD ++ G NT+ +D+P LTAR G H+
Sbjct: 157 KTGTRTGDSKWISNEESRHFAHYIRHISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQ 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
P R+++ P +N++ V TIV +G + ++ G +VVE +++
Sbjct: 217 PTRVIIDDNGRAPLSSNVFHVP-GNTIVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVD 275
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ ++ Y G S+L E GG + S L+ KV FVAP IIGGK+A PV+ LG
Sbjct: 276 LKALLRYLGQNGVTSVLVEGGGIVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGA 335
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
++ + L DI G D+LISG++
Sbjct: 336 ELITDSAKLRDITTTAFGQDVLISGYV 362
>gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
Length = 372
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 196/382 (51%), Gaps = 35/382 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE--AGGSF 105
Y++R ++A +G SP+P GC+I S G+V GEG+ G AEV AV A
Sbjct: 15 YMQRCHELALMGSGAVSPNPMVGCVI-VSGGQVIGEGFHRQYGGPHAEVNAVASVADRER 73
Query: 106 CRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
R AT Y+N+EP G S +V+ GI RVV+G R+P + G+ + L + G++V
Sbjct: 74 LRNATLYVNLEPCSHFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGVEV 133
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+ +S+ + EA + +HR PF K A +LD GK
Sbjct: 134 IEGVLETESERLNEAFIT--------VHRKGR--PFVALKLAQSLD------------GK 171
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IA SG + WI+ + +R V LR DAV+ G TV D+ RLT RH G P+R+VL
Sbjct: 172 IATVSGASKWITGEEARTEVHRLRCSFDAVLTGAATVIADDSRLTVRHCAGRNPIRVVLD 231
Query: 285 QTLNLPEEANLWDVSDAPTIVVT------QRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
L++P A ++D ++A T+V T + AR+ +K +A GV E L+ V+
Sbjct: 232 SRLSIPIGAGIFD-TEAETVVFTALSMQDSQKARQLAKKGVAVFGVAERECG-LDLAAVL 289
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
E H+R LS+L E GG L +S + L K++ F+AP + GG + + + +G+ Q
Sbjct: 290 ERLHERRILSVLVEGGGRLGSSFVRMELFDKLYMFIAPVLFGG-DGLSAFAPIGITLPEQ 348
Query: 399 ALDLIDICYEQVGPDMLISGFL 420
A+ L + G D+L++ ++
Sbjct: 349 AIRLDFEPPSRFGRDLLLTAYV 370
>gi|389580838|ref|ZP_10170865.1| riboflavin biosynthesis protein RibD [Desulfobacter postgatei 2ac9]
gi|389402473|gb|EIM64695.1| riboflavin biosynthesis protein RibD [Desulfobacter postgatei 2ac9]
Length = 379
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 201/390 (51%), Gaps = 34/390 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G+TSP+P G ++ G++ G+G+ G AEV A++ +
Sbjct: 3 DLDYMARALELAAQGKGYTSPNPCVGAVVVKD-GRIIGQGFHSKAGGPHAEVVAIDDAAA 61
Query: 105 FC----RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
AT Y+ +EP + G + ++ AGI RVVV ++P ++ G + LR
Sbjct: 62 RAPEKLAHATIYVTLEPCNHFGRTPPCTHKILNAGIGRVVVACKDPNPNVAGGGIEFLRG 121
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+GL+V S ++E+ ++ L+ + + + PF K A TLD
Sbjct: 122 KGLEV-------VSGVMEQ--EALTLIEDFVWNVQNHKTPFVTLKCAATLD--------- 163
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-- 277
G IA +G + WI+S SR+ +LR ++DA+++G T+ D+P LTAR G T
Sbjct: 164 ---GYIATRTGDSQWITSSASRNFGHELRHQNDAILIGSGTLHGDDPSLTARIEGKPTRD 220
Query: 278 PMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
P RI+L L++ E A + S APTI+VT + L +G +V++ +L +
Sbjct: 221 PARIILDTRLSIQENAKVVVQNSSAPTIIVTGPECDPGKIQRLKDKGAQVLKCRVLENLL 280
Query: 337 V----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
M + S+L E GG +AASA+++G+++KV F+APKI+G + G
Sbjct: 281 DLNDLMIRLKELSITSLLIEGGGRVAASALAAGIVNKVCYFLAPKILGANDGIPVFKGSG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQP 422
++ +L+ + Q G DML++G+L+P
Sbjct: 341 PEKIKDVFELVRVTTRQFGSDMLVTGYLEP 370
>gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis bifunctional
diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clostridium difficile 630]
gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42]
gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255]
gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Clostridium difficile 630]
Length = 370
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 33/383 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+++A ++A GF +P+P GC+I + + G+GY G+ AEV A+ +
Sbjct: 7 KEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSN-IIGKGYHEKFGSNHAEVNAINS 65
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+N+EP +G V ++Q I RVV+ +P + G V+ L+
Sbjct: 66 AKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDN 125
Query: 161 GLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+ V V + ED EAR +N + ++ P + K A++LD
Sbjct: 126 NIDVTVGILED-------EARD----LNEAFFYHIKNKRPLCIVKSAVSLD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-- 277
GKIA S + WIS+++SR R + +++VG NTV DNP LT R
Sbjct: 166 ---GKIATKSLESKWISNESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSH 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILN 333
P RIV+ L LP +NL + TIV T K L VE + + ++++
Sbjct: 223 PTRIVIDTHLKLPLNSNLVKDKTSKTIVFTCCKESIKLS-MLKENNVETIISPSKNNLVD 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
VM + S+L E G TL S + L+ KV F++PKIIGGK+APT VS G+
Sbjct: 282 LEFVMYKLGELNIDSVLVEGGATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGI 341
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
+S + L + D+LI
Sbjct: 342 NHLSDSTQLTINNVTLIDGDILI 364
>gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88]
gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88]
Length = 380
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 192/383 (50%), Gaps = 31/383 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA ++A G+ +P+P G +I G++ GEGY G AE++A ++
Sbjct: 22 DEIYMKRAIELAHLGEGYVNPNPLVGAVIVKD-GRIIGEGYHKKFGEAHAEIEAFKSCKE 80
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+G T Y+N+EP +G V +++ GI +V++G+++P + G+ + L+ ++
Sbjct: 81 DPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKKANIE 140
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V C +N I T + PF + K+A TLD G
Sbjct: 141 VRV----------GTLEDECRNLNEIFIKYITYKKPFCILKWASTLD------------G 178
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRI 281
KI +S G + WI+ + SR+ V +R + +++VG NT+ RDNP LT R G P RI
Sbjct: 179 KICSSIGDSRWITGEDSREYVHLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRI 238
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDV 337
++ P +A ++ + T + T K K G +++ + ++ + +
Sbjct: 239 IVDSKGRTPLDARIFK-EEGDTFIATTSQIEDKKIKEFEKVGAKIIIIPEKGRKVDLQYL 297
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ Y SIL E GGTL SA+ G++ KV F+APKI+GG+N+ TP+ G+ +
Sbjct: 298 VNYLTKLNIDSILLEGGGTLNYSALKEGIVDKVLMFLAPKILGGENSKTPIEGEGIKYIK 357
Query: 398 QALDLIDICYEQVGPDMLISGFL 420
++L D+ + D+LI GF+
Sbjct: 358 DCIELKDLSIKNFKEDILIEGFI 380
>gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26]
gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932]
gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55]
gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34]
gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79]
gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Clostridium difficile R20291]
gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58]
gi|384360976|ref|YP_006198828.1| riboflavin biosynthesis protein [Clostridium difficile BI1]
gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291]
Length = 367
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 33/383 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ +D Y+++A ++A GF +P+P GC+I + + G+GY G+ AEV A+ +
Sbjct: 4 KEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSN-IIGKGYHEKFGSNHAEVNAINS 62
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ +T Y+N+EP +G V ++Q I RVV+ +P + G V+ L+
Sbjct: 63 AKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDN 122
Query: 161 GLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+ V V + ED EAR +N + ++ P + K A++LD
Sbjct: 123 NIDVTVGILED-------EARD----LNEAFFYHIKNKRPLCIVKSAVSLD--------- 162
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-- 277
GKIA S + WIS+++SR R + +++VG NTV DNP LT R
Sbjct: 163 ---GKIATKSLESKWISNESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSH 219
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILN 333
P RIV+ L LP +NL + TIV T K L VE + + ++++
Sbjct: 220 PTRIVIDTHLKLPLNSNLVKDKTSKTIVFTCCKESIKLS-MLKENNVETIISPSKNNLVD 278
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
VM + S+L E G TL S + L+ KV F++PKIIGGK+APT VS G+
Sbjct: 279 LEFVMYKLGELNIDSVLVEGGATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGI 338
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
+S + L + D+LI
Sbjct: 339 NHLSDSTQLTINNVTLIDGDILI 361
>gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
12442]
gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
12442]
Length = 373
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 190/385 (49%), Gaps = 35/385 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
R D Y+R A +A +AG TSP+P G ++ G + G G G + AEV A+
Sbjct: 1 MKRMTDQEYMRIALQLAQSTAGQTSPNPMVGAVVVKD-GNIVGMGAHLLAGEEHAEVHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
G G+T Y+ +EP G L++ + RVV+ NPL + G +
Sbjct: 60 RMAGDKANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPL--VSGSGAKR 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L+ G+ V + ++EE + +N H +++PF K AM+LD
Sbjct: 118 LQKAGISV-------TTGVLEEEATA---LNRYFFHYMKTKLPFVTIKTAMSLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGG 274
GKIA ++G + WI+ + +R V R DA+++G NTV DNP LT R +GG
Sbjct: 162 ------GKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNGG 215
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
H P+RI+L L P +++ APT I+V + + K Y S+ V V++
Sbjct: 216 KH-PIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGY-ESQAVSVLQMKTSQ 273
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ RD++ ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 274 IEIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPTMFGGT 333
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G +++ A+ L +Q+G D+ I
Sbjct: 334 GFIKLQDAISLQIQEMKQIGDDIKI 358
>gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2]
gi|423682809|ref|ZP_17657648.1| riboflavin-specific deaminase [Bacillus licheniformis WX-02]
gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2]
gi|383439583|gb|EID47358.1| riboflavin-specific deaminase [Bacillus licheniformis WX-02]
Length = 362
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 193/385 (50%), Gaps = 29/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ A ++A + G T +P G ++ G+V G G G AEV A++ G
Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKD-GEVVGMGAHLKYGEAHAEVHAIQMAGR 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G + L+ ++G+ RVVV +P + G+ + LRS G++
Sbjct: 62 HAEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ +++E + +N +H + +P+ K A +LD G
Sbjct: 122 V-------ETGVLKEQAEE---LNEKFMHFMRTGLPYVTLKAAASLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A ++G + WI+S+ +R R ++VG T++ D+P LT R G + P+R+V
Sbjct: 160 KTATATGDSKWITSEEARMDAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAVNQPVRVV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L TL++P ++ + +APT + T A + + + GV+V ++ D L RDV+ +
Sbjct: 220 LDTTLSIPLQSKVIQDKEAPTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLH 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
DRG S+ E G T+ AS + GL ++ ++APK+IGG +P+ +S G M
Sbjct: 280 LADRGIASVFVEGGATVHASFVKEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVP 339
Query: 401 DLIDICYEQVGPDMLISGFLQPIPD 425
L +VG D+ ++ +PI +
Sbjct: 340 LLQFTTITKVGQDIKLAA--RPIKE 362
>gi|386723459|ref|YP_006189785.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
K02]
gi|384090584|gb|AFH62020.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
K02]
Length = 370
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 186/381 (48%), Gaps = 29/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A +AG T +P GC++ G+V G G +G AE+ A+ G+
Sbjct: 5 DEMYMRIALQLATAAAGQTGINPVVGCVL-VKDGRVVGMGAHLKRGDAHAEIHALNMAGA 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+TAY+ +EP HG S L++ G+ RVVV +P + G + LR+QG++
Sbjct: 64 EAAGSTAYVTLEPCSHHGRTGPCSDRLIREGVKRVVVAAVDPNPVVAGSGIARLRAQGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +S+ + EA +L +R PF K A TLD G
Sbjct: 124 VTEGVLAAESEALNEAFNKYIL----------TRRPFVTVKTASTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
K+AA+ G + WI+ + +R V LR R A++ G TV D+P+LT R G +P+RI+
Sbjct: 162 KVAAAGGDSKWITGEAARGYVHTLRHRHQAILTGVGTVMADDPQLTTRLPVPGLSPVRII 221
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L +P E+ L +AP IV+T A ++ L + GV+V++ + D+
Sbjct: 222 ADSMLRIPLESKLLHDGEAPVIVLTTAEAPEDRRRALEALGVQVIDCGPGPAVDLEAALA 281
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKII-GGKNAPTPVSELGMVEMSQ 398
G L S+L E GG LA + + L K+ F APKII GG AP G M Q
Sbjct: 282 RLGELEIGSVLVEAGGKLAGAFLERRLADKLVLFFAPKIIGGGAEAPGTFDFPGFRAMRQ 341
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+ L + E G D+ +G+
Sbjct: 342 AIRLERMTVETFGEDVCFTGY 362
>gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
8327]
gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
8327]
Length = 371
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 185/385 (48%), Gaps = 31/385 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R ED ++RR ++A++ AG SP+P G +I G+V GEG+ G AE A+ +
Sbjct: 8 RPEDEGHMRRCLELAERGAGSVSPNPMVGSVI-VHDGRVIGEGWHQKYGGPHAEPHAIAS 66
Query: 102 --GGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALR 158
+ R +T Y+N+EP HG + L V+ I RVVVG +P + + G+ + LR
Sbjct: 67 VEDEALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLR 126
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V V + +S+ + EA + HR PF K A TLD
Sbjct: 127 EAGVEVTVGVLEAESERLNEAFMTS--------HRKGR--PFVALKTAQTLD-------- 168
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
G+IA S G + WI+ + SR V LR DAV+ G +T D+ LT R G P
Sbjct: 169 ----GRIATSLGASKWITGEASRCEVHRLRCAYDAVLCGASTALADDAELTVRFCAGRQP 224
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNS 334
+R++L L +P E +++ + + + A L +RGVEVV L+
Sbjct: 225 LRVLLDPRLQVPHEFRIFNDAAKTLVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDL 284
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
V H R LS++ E G L+A+ + SG++ K + F+APK+ G P+ L ++
Sbjct: 285 AQVFAELHRRRVLSVMVEGGSRLSAAMVRSGIVDKYYVFIAPKLFGDDGLPS-FGPLDVI 343
Query: 395 EMSQALDLIDICYEQVGPDMLISGF 419
A L E+ G D+L+ +
Sbjct: 344 RPDMATKLSFTRVERFGEDLLVEAY 368
>gi|339626548|ref|YP_004718191.1| riboflavin biosynthesis protein RibD [Sulfobacillus acidophilus
TPY]
gi|379006006|ref|YP_005255457.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Sulfobacillus acidophilus DSM 10332]
gi|339284337|gb|AEJ38448.1| riboflavin biosynthesis protein RibD [Sulfobacillus acidophilus
TPY]
gi|361052268|gb|AEW03785.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Sulfobacillus acidophilus DSM 10332]
Length = 369
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 190/378 (50%), Gaps = 31/378 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++RA +A + G TSP+P G +I G V GEGY GT AEV A++A G RG
Sbjct: 13 MKRALQLAKRGRGRTSPNPLVGAVIVDDQGTVIGEGYHRRAGTDHAEVVALKAAGDRARG 72
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
T Y+ +EP + HG + A++ AGI RVVV R+P + G + L++ G+ V V
Sbjct: 73 HTLYVTLEPCNHHGRTPPCTEAIIAAGIRRVVVATRDPNPEVTGHGIERLQAAGIVVEV- 131
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ + + +N P + + P+ + K AM+LD GK+A
Sbjct: 132 ---------GDGQAAAEALNRPFMTWSRKHRPYVILKAAMSLD------------GKVAT 170
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQT 286
+ + +++S+++ LR +DA++VG TV D+P LT R G P+R+VL
Sbjct: 171 AYHESKYLTSESALAHAHRLRRETDAILVGVGTVLADDPALTDRGPGRRRDPVRVVLDSH 230
Query: 287 LNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-----LNSRDVMEY 340
P A L + S AP +V T A ++++ + S G EV+ ++ V+
Sbjct: 231 GRTPATARLLTEDSPAPALVFTTDRAPAEWERAIFSAGGEVIRVPANPHGQVDLTAVLTE 290
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
DR LS+L E G T+ S I +GL ++APKI+GG+NAPTPV+ G + +A
Sbjct: 291 LADRRLLSLLVEGGPTVHWSFIQAGLADSWVGYIAPKILGGENAPTPVAGPGF-HLPEAP 349
Query: 401 DLIDICYEQVGPDMLISG 418
L + PD+++ G
Sbjct: 350 GLTITHVWRRFPDVILWG 367
>gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
Length = 366
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 180/379 (47%), Gaps = 29/379 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A + A + G T P+P G +I + G++ G G G AE+ A+ G +
Sbjct: 7 YMRLALENARSAKGQTEPNPLVGSVI-VNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP HG A+V+AGI RVV+ +P + G+ V+ L+ G++V
Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEV-- 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+ + + +N S+ PF K A+TLD GKIA
Sbjct: 124 --------IVGVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+S+ +R+ V LR ++VG TV DNP+LT R G P+RI+L
Sbjct: 164 TRTSESKWITSEAAREDVHRLRNEHVGILVGVQTVIHDNPQLTTRLPEGRNPIRIILDSK 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV-----MEYF 341
L +P +A + +APT + T R + L GV+V NS V ++
Sbjct: 224 LRIPLDARVITDGEAPTWIFTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDIL 283
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
S+ E G + AS + GL ++ ++APK++GG+ AP + G+ MS A+
Sbjct: 284 GAAEVSSVFVEGGAEVNASFVQQGLADRLVLYIAPKLVGGRAAPGFLGGEGVSAMSDAVA 343
Query: 402 LIDICYEQVGPDMLISGFL 420
L D+ VG D I G+
Sbjct: 344 LHDLSVTPVGVDWKIEGYF 362
>gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
Ice1]
gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
Ice1]
Length = 374
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 187/393 (47%), Gaps = 32/393 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED +++ RA ++A + G TSP+P G ++ G+V GEGY GT AEV A+ G
Sbjct: 4 EDFSFMDRALELAALALGRTSPNPVVGAVV-VKDGRVIGEGYHRKAGTPHAEVHALRQAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
G T Y+ +EP + HG + A++ A I+RVV + +P + GQ LR G+
Sbjct: 63 EAACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREAGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++ +A + +N P T + P+ + K+AMT D
Sbjct: 123 EVDV-------GVMADA---AITINQPFFTWVTRKRPWVLLKWAMTAD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMR 280
GKIA +SG + W+SS SR +V R R DA++VG TV D+P+LT R P+R
Sbjct: 161 GKIATASGDSRWVSSPASRRKVHQWRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVM 338
I++ P A + ++A TI+ A + L G V+ D D+
Sbjct: 221 IIVDSKARTPLTAKVLS-AEAKTIIAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLS 279
Query: 339 EYFHDRG---YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
H S+L E G + + + L + F+APKI+GG+ AP+PV G
Sbjct: 280 YLLHRLACDNVTSLLVEGGARIHGAFLDGNLADRAAIFLAPKIVGGEGAPSPVGGTGAAL 339
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIPDLMP 428
M++A L VG D L+ G LQ + +P
Sbjct: 340 MAKARRLQRCVMTSVGDDWLLEGVLQEVRPCLP 372
>gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404489726|ref|YP_006713832.1| riboflavin biosynthesis protein RibD [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348716|gb|AAU41350.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase RibD [Bacillus licheniformis DSM 13 = ATCC
14580]
Length = 362
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 193/385 (50%), Gaps = 29/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ A ++A + G T +P G ++ G+V G G G AEV A++ G
Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKD-GEVVGMGAHLKYGEAHAEVHAIQMAGR 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G + L+ ++G+ RVVV +P + G+ + LRS G++
Sbjct: 62 HAEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ +++E + +N +H + +P+ K A +LD G
Sbjct: 122 V-------ETGVLKEQAEE---LNEKFMHFMRTGLPYVTLKAAASLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A ++G + WI+S+ +R R ++VG T++ D+P LT R G + P+R+V
Sbjct: 160 KTATATGDSKWITSEEARMDAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAVNQPVRVV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L TL++P ++ + +APT + T A + + + GV+V ++ D L RDV+ +
Sbjct: 220 LDTTLSIPLQSKVIQDKEAPTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLH 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
DRG S+ E G T+ AS + GL ++ ++APK+IGG +P+ +S G M
Sbjct: 280 LADRGIASVFVEGGATVHASFVKEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVP 339
Query: 401 DLIDICYEQVGPDMLISGFLQPIPD 425
L ++G D+ ++ +PI +
Sbjct: 340 LLQFTTITKIGQDIKLAA--RPIKE 362
>gi|302390233|ref|YP_003826054.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Thermosediminibacter oceani DSM 16646]
gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermosediminibacter oceani DSM 16646]
Length = 373
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 36/389 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RRA D+A K G TSP+P G ++ G++ GEGY G AEV+A+
Sbjct: 4 DVFFMRRALDLAKKGRGTTSPNPMVGAVV-VKDGEIVGEGYHRKAGEPHAEVEALAQAAE 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA--LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGA Y+N+EP CH T A +++AG+ RVV + +P + G+ ++ L+ G+
Sbjct: 63 RARGAELYVNLEPC-CHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + ++K + E I + PF V K A + D
Sbjct: 122 EVVVGVLEEEAKKLNEV----------FIKYIITGKPFVVAKIAQSFD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRI 281
GKIA +SG + WI+ + +R + +LR DA++VG TV D+P LT R P+RI
Sbjct: 160 GKIAMASGESRWITGEPARVKAHELRSWYDAIMVGVGTVMADDPLLTCRLPEKRKNPVRI 219
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
V+ +P +A + I+ T A + L RGVEV++ R +
Sbjct: 220 VVDSGARMPPDARMLRCEGGRVILATTERADSERVSALKERGVEVIKVPPAEGRVDLSRL 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
ME G S+L E G TL +S I L+ K+ FVAP +IGG+ + V +L + +S
Sbjct: 280 MEILGGMGITSVLVEGGSTLTSSLIKGNLVDKLLVFVAPVVIGGEGIDS-VGKLHVDRLS 338
Query: 398 QALDLIDICYEQVGPDMLISGFLQPIPDL 426
QA + +G D+L+ + PDL
Sbjct: 339 QAPRFKFHSIDAIGGDLLLEAY----PDL 363
>gi|355679827|ref|ZP_09061458.1| riboflavin biosynthesis protein RibD [Clostridium citroniae
WAL-17108]
gi|354811948|gb|EHE96570.1| riboflavin biosynthesis protein RibD [Clostridium citroniae
WAL-17108]
Length = 371
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 183/382 (47%), Gaps = 32/382 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y+ A +A K G +P+P G +I G + G GY G AE +A+ +
Sbjct: 5 KMTDEEYMGLALKLAQKGEGRVNPNPLVGAVIVKD-GMIIGRGYHREYGGPHAEREALAS 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
RGAT Y+ +EP CH T A++++GI+RVV+G +P + G+ + L S
Sbjct: 64 LTRTARGATLYVTLEPC-CHCGKTPPCTDAIMESGISRVVIGTADPNPLVAGKGISLLNS 122
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+QV +Q + E C+ N H ++ P+ V KYAMT+D
Sbjct: 123 HGIQV------VQGVLEAE----CISQNQVFFHFIRTKQPYVVMKYAMTMD--------- 163
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GK A +G + WI+ +R RV R R A++ G T+ +D+P LT R G P+
Sbjct: 164 ---GKTATCTGRSRWITGDEARMRVHRDRNRYSAIMAGVGTILKDDPLLTCRLPDGRNPV 220
Query: 280 RIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR--- 335
RI+ L P + + + TI+ T R + Y + G E++ +
Sbjct: 221 RIICDTRLRTPATSRIVSTARSVRTILATCRTEEDIIRPYEEA-GCEILTLPQADGHVDL 279
Query: 336 -DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+M+ + SIL E G L SA+ GL+HKV A+VAPK+ GGK+AP+PV G+
Sbjct: 280 AALMKRLGEMNIDSILLEGGAALNWSALDQGLVHKVQAYVAPKLFGGKDAPSPVDGKGVG 339
Query: 395 EMSQALDLIDICYEQVGPDMLI 416
QA L +G D+L+
Sbjct: 340 APGQAFFLKQPRITVLGDDILL 361
>gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
Length = 378
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 184/395 (46%), Gaps = 37/395 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R E ++ A +A + GF SP+P GC++ GKV G GY G AEV+A+
Sbjct: 15 RREHQYFMHMALSLALRGTGFVSPNPRVGCVVVRE-GKVVGWGYHRRYGGPHAEVEALRR 73
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G+ G+T Y+N+EP G + LV+A + R VVG+R+P + G+ + LR
Sbjct: 74 AGTLAEGSTVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDA 133
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V L+S + EEAR +N I R T P+ K A++LD
Sbjct: 134 GIEV------LESVLPEEAR----WINRGFIRRMTRGRPWVTLKGALSLD---------- 173
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
G A SG + WI+ +RD+ LRG DA++VG TV D+P LT R G P R
Sbjct: 174 --GTTALESGESRWITGPLARDKAHLLRGEHDAILVGVGTVLLDDPELTVRSVEGVCPRR 231
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-----DILNSR 335
+VL L P+ A + ++ T++ + + L RG E+ L+
Sbjct: 232 VVLDGALRTPQTAKV--LASGGCTFFTEQDMPQGAGQRLEERGAEICRVPRGPEGGLSLV 289
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
V+E+ G ++L E G +A S + L+ +V F+APK++G G+
Sbjct: 290 PVLEHLASAGINTLLVEGGARVAGSFLREKLVDEVSLFLAPKLLG--RGLQLGESWGLEH 347
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVI 430
+ Q DL Q G D+ + G +P P +
Sbjct: 348 LDQGFDLRSCRIRQAGEDLWLEG----VPTCSPAL 378
>gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 379
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 182/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ GITRVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ S APT ++ R ++ S + + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIMVGRDVNKEKIASYESENITIFQMKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G
Sbjct: 281 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQAKYFNEIITYISPKLIGGSKAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 341 FSTLQDALSLEIQEMKQIGDDIKI 364
>gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Magnetococcus marinus MC-1]
gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Magnetococcus marinus MC-1]
Length = 376
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 186/392 (47%), Gaps = 31/392 (7%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
K +D AY+ A +A + G T P+P GC+I ++ G G+ G AEV
Sbjct: 1 MAKPDAGKDRAYMDHALRLAARGLGRTRPNPTVGCVIVKED-RIIGRGWHRKAGGPHAEV 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVR 155
+A+ G RGATAY+ +EP HG L++AGI RVV + +P + GQ +
Sbjct: 60 EALRMAGEAARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L+ G+ V V EEA + ++ P I R P K A +LD
Sbjct: 120 RLKQAGVVVQVGVR-------EEAAQ---MLIRPFITRILHNRPMVTLKSAASLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275
GK A H+ WI+ + +R R LR D ++ G TV D+PRLT R GG
Sbjct: 165 -------GKTATRERHSQWITGEAARKRGHRLRDTHDVILTGIQTVLADDPRLTCRLKGG 217
Query: 276 HTPMRIVLTQTLNLPEEANLWDV-SDAPT-IVVTQRGARRKFQKYLASRGVEVV---EFD 330
P+R+V+ +L L E A + + S AP + T R K + GVEV+ E D
Sbjct: 218 RDPIRVVVDSSLKLSENAGVINPDSTAPVWVATTLRAPEEKRALFALLPGVEVIMCAEDD 277
Query: 331 I--LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
++ D+ME R S+L E GG L+ + + L+ ++ F+AP +IGG+ A +
Sbjct: 278 TGRVDLYDLMEKLAKREITSVLAEAGGVLSGALLDKRLVDRIALFMAPMLIGGREASGIL 337
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG ++++A L + + D+L+ G +
Sbjct: 338 DSLGAAKLTEAPRLDHVTLTSLDGDLLVEGCV 369
>gi|407796458|ref|ZP_11143412.1| riboflavin biosynthesis protein RibD [Salimicrobium sp. MJ3]
gi|407019243|gb|EKE31961.1| riboflavin biosynthesis protein RibD [Salimicrobium sp. MJ3]
Length = 364
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 187/382 (48%), Gaps = 38/382 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A K+ G T P+P ++ + ++ G G G AEV A+ G+
Sbjct: 4 DRYYMELAVEMAQKTMGQTDPNPAVAAVVVKNN-QIVGTGVHVKAGEPHAEVHALNMAGT 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
A Y+ +EP +G A+V AG+ R V+ +P + G+ ++ ++ G++
Sbjct: 63 HAEDAEIYVTLEPCSHYGRTPPCADAIVAAGVKRAVIASFDPNPEVAGKGMKKMKDGGVE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + R+ +N P H + P+ K AM+LD G
Sbjct: 123 V----------VTDVCREEADAINRPFFHYISKGKPYVRLKSAMSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA S+G + WI+ + +R R RS A++VG NTV D+P LTAR GG P+RIV
Sbjct: 161 KIATSTGESQWITGERARKDGHWYRHRSGAILVGINTVLTDDPMLTARLEEGGSHPVRIV 220
Query: 283 LTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEV-------VEFDILNS 334
L L +P +A L +P IV + ++ +++ A VE+ V+ D+
Sbjct: 221 LDNHLRMPRDAKLMQDDTSPVWIVAGKTVTNKQLKEFSAPSHVEILRQSEETVDIDVF-- 278
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++ +R S+L E GGT+A S + S + +V ++APK+IGG+ A TPVS G+
Sbjct: 279 ---LKEIAERKISSLLVEGGGTVADSFVRSRNVDEVITYIAPKLIGGRKALTPVSGAGIE 335
Query: 395 EMSQALDLIDICYEQVGPDMLI 416
+ A+ + +++G D+ I
Sbjct: 336 HLHDAMSFSVVHQDRLGEDIKI 357
>gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
Length = 379
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 190/386 (49%), Gaps = 35/386 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+ A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMNIALQLAESTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G G+T Y+ +EP G L++ + RVV+ NPL + G R
Sbjct: 65 IHMAGDKAYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPL--VSGSGAR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L+ G+ V + ++EE + +N H +++PF K AM+LD
Sbjct: 123 RLQEAGISV-------TTGVLEEEATT---LNRYFFHYMKTKLPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GKIA S+G + WI+ + +RD V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKIATSTGESKWITGEDARDDVHQYRHTHDAILVGVNTVIADNPSLTTRLPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H P+RI+L L P +++ APT I+V + + K Y S+G+ V +
Sbjct: 221 GKH-PIRIILDTHLRTPLSSHIITDGIAPTWIIVGKDVDKGKITTY-ESQGISVFQMKTK 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ R+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 279 QIEIREFLSLLGEKQILSLFVEGGQSVHASFLEAKCFNEIVTYISPKLIGGKDAPTMFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ A+ L +Q+G D+ I
Sbjct: 339 TGFNKLQHAISLQIQEMKQIGDDIKI 364
>gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
Length = 379
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 184/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ + RVV+ NPL + G +
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++EE +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV-------TTGVLEE---EAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ S APT ++ + + S + + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGKDVNPEKIASYESENIAIFQMKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G
Sbjct: 281 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +QVG D+ I
Sbjct: 341 FSTLQDALSLEIQEMKQVGDDIKI 364
>gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 370
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 181/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ GITRVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ S APT ++ R ++ S + + + + +D++
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDIL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 278 DLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 338 ALSLEIQEMKQIGDDIKI 355
>gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
Length = 365
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 194/390 (49%), Gaps = 40/390 (10%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
R D +++ A +A+ G T P+P G +I GK+ G+G+ G AE +A+
Sbjct: 1 MERVNDEIFMKEALRLAELRKGLTHPNPTVGAVIVKD-GKIIGKGFHKKAGMPHAEREAI 59
Query: 100 EAG---GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAV 154
G G+T Y+ +EP CH T A++ I RVV+ +P + G+ V
Sbjct: 60 NDAIKKGFNLEGSTMYVTLEPC-CHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGV 118
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
L+ G++ V+G LQ +EARK +N + PF K A +LD
Sbjct: 119 EILKKHGIET-VVGV-LQ----DEARK----LNEDFFVYIKEKRPFIHLKIAQSLD---- 164
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
GKIA +G + WI+S+ SR V LR S A++VG NTV +DNP LT R+
Sbjct: 165 --------GKIATGTGSSKWITSEESRRYVHKLRRESTAIMVGTNTVLKDNPNLTVRYTE 216
Query: 275 GH-TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
P+R+VL + L +PE+ N+++ ++A T++ T A R K L +GV++V + N
Sbjct: 217 TERQPLRVVLDKDLKIPEDYNVFN-NEAKTVLFTSDIADRNKIKRLEDKGVQIVRLPLKN 275
Query: 334 SR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
R D+++ + + + E G L + L ++ F+APKII G++ +
Sbjct: 276 RRFDLNDILKNLYSLDVVHLFIEGGRDLITQFLKEKLFDRISVFIAPKII-GEDGISSFG 334
Query: 390 ELGM--VEMSQALDLIDICYEQVGPDMLIS 417
+LG+ V+ S L L DI ++ G D+L+
Sbjct: 335 KLGIDTVDKSINLHLEDI--KRFGDDILLQ 362
>gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
195]
gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
195]
Length = 365
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 189/387 (48%), Gaps = 41/387 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A + G SP+P G +I + G+V G+G+ G AE+ A++ +
Sbjct: 3 YMSQALSLAKLAIGQVSPNPAVGAVIVKN-GEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP CH T A++++GI V + NPL + G+ + L G++
Sbjct: 62 GAALYVTLEPC-CHQGRTPPCTVAIIESGIKEVYIATLDDNPL--VSGKGKKELEDAGIK 118
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
VH+ + EAR+ +N T+ +PF KYAM+LD G
Sbjct: 119 VHL------GMMEREARQ----MNEAYFKYITTGMPFVTAKYAMSLD------------G 156
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH------T 277
K +G + WIS++ SR +R SD ++ G NT+ +D+P LTAR G
Sbjct: 157 KTGTRTGDSKWISNEESRHFAHYIRHISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQ 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
P R+++ P +N++ V TIV +G + ++ G +VVE +++
Sbjct: 217 PTRVIIDDNGRAPLSSNVFHVP-GNTIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVD 275
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ ++ Y G S+L E GG + S L+ KV FVAP IIGGK+A PV+ LG
Sbjct: 276 LKSLLRYLGQNGVTSVLVEGGGIVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGA 335
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
++ + L DI G D+LISG++
Sbjct: 336 ELITDSAKLRDITTTAFGQDVLISGYV 362
>gi|429219982|ref|YP_007181626.1| riboflavin biosynthesis protein RibD [Deinococcus peraridilitoris
DSM 19664]
gi|429130845|gb|AFZ67860.1| riboflavin biosynthesis protein RibD [Deinococcus peraridilitoris
DSM 19664]
Length = 358
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 192/393 (48%), Gaps = 39/393 (9%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A A + G TSP+P+ GC++ G++ G G+ G AEV A+ RG
Sbjct: 1 MRAALGQAARGLGRTSPNPSVGCVV-VREGEIVGRGFHPKAGEPHAEVFALREAAERARG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
ATAY+ +EP G + AL+ AG+ RVVV +P + G+ VR LR ++V V
Sbjct: 60 ATAYVTLEPCSHFGRTPPCADALIAAGVRRVVVAALDPNPRVAGRGVRKLREADIEVSV- 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
LQ E AR+ + LI RA P++V KYAMTLD G IA
Sbjct: 119 -GVLQD---EAARQQAGFRS--LITRAR---PWTVLKYAMTLD------------GTIAT 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLTQT 286
SG + W+SS+ +R V R DAV VG TV D+P+LT R GG R+V +
Sbjct: 158 RSGDSRWVSSEEARTLVHRWRDELDAVAVGAQTVLTDDPQLTTRGVPGGRDARRVVFDRR 217
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
+P A + +V + + R F+ Y G V+ + L + +
Sbjct: 218 GRVPAAAR--TLGPGSVLVTSAQTDPRPFEAY----GTTVIAHEDLPG--ALRALGELDI 269
Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT--PVSELGMVEMSQALDLID 404
S+L E G LA + + + L+ +V FVAPK++G +P P+ + M+QA +L
Sbjct: 270 ASVLLEGGPVLAGAFLEADLVDEVRVFVAPKLLGAGQSPLGGPLHDF----MAQARELQG 325
Query: 405 ICYEQVGPDMLISGFLQPIPDLMPVIPSEDETF 437
+ E VG D+LI GFL P+P + + P E +T
Sbjct: 326 VRTETVGHDVLIRGFLHPLPTVSTLTPEEIQTI 358
>gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
gi|224954496|gb|EEG35705.1| riboflavin biosynthesis protein RibD [Eubacterium hallii DSM 3353]
Length = 411
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 188/428 (43%), Gaps = 81/428 (18%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG-- 102
+ Y+RRA ++A K +G +P+P G +I G++ GEGY G AE A+
Sbjct: 3 EEKYMRRAIELAKKGSGHVNPNPLVGAVIVKD-GEIIGEGYHECYGQLHAERNAIANARK 61
Query: 103 -GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G+ G+T Y+ +EP CH T A+++ I RVVVG +P + G+ + LR
Sbjct: 62 RGNNIEGSTIYVTLEPC-CHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFKLLRE 120
Query: 160 QGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+G++V H L E+ C +N H ++ P+ KYAMT+D
Sbjct: 121 KGIEVIPHFLKEE------------CDAMNHVFFHYISTGTPYVAMKYAMTMD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GKIA +G + W++ + SR V LR ++ G TV D+P L+ R GG
Sbjct: 162 -----GKIACYTGDSKWVTGEESRAHVQTLRNHYKGIMAGIGTVLADDPMLSCRIEGGRD 216
Query: 278 PMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEV---------- 326
P+RI+ L +P ++ L + P IV A L +GVEV
Sbjct: 217 PVRIIADSHLRIPMDSQLVRTAKQQPLIVACLPDADETKAVQLEEKGVEVLRIPGIAVND 276
Query: 327 -----------------------------VEFDILNSRD--------VMEYFHDRGYLSI 349
V+ DI+ + +M+ R I
Sbjct: 277 FSGSSSDSVLKYKDRLLADNLADNNISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGI 336
Query: 350 LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQ 409
L E GG L SA+ +G++ +V+ ++APKI GG A TPV G+ + + A I ++
Sbjct: 337 LLEGGGQLNESALQAGIVQRVYCYIAPKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQE 396
Query: 410 VGPDMLIS 417
G D+L+
Sbjct: 397 FGQDILLE 404
>gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus thuringiensis str. Al Hakam]
gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus thuringiensis str. Al Hakam]
gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
Length = 379
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ GITRVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G P+R++L L P +++ S APT I+V + K Y S + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGTDVNKEKIASY-ESENITIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT
Sbjct: 280 IEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFSTLQDALSLEIQEMKQIGDDIKI 364
>gi|392956883|ref|ZP_10322409.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus macauensis ZFHKF-1]
gi|391877380|gb|EIT85974.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus macauensis ZFHKF-1]
Length = 360
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 186/381 (48%), Gaps = 29/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A + A G T+P+P G +I + G++ G G G AE+ A+ G
Sbjct: 3 DEGYMKLAIENARAMKGQTAPNPMVGAVIVKN-GRIVGIGSHLKPGEPHAEIHALRMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+T Y+ +EP G AL++AG+ +VV+ +P + G+ V LR G++
Sbjct: 62 EASESTIYVTLEPCSHVGKTGPCAEALIKAGVKKVVIASLDPNPLVAGRGVTMLREAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + +E+ + + N ++H PF K AMTLD G
Sbjct: 122 V------VTGVLEQESWEMNEVFNHFIVHNR----PFVTLKAAMTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
K A + H+ WI+ + +R+ V LR A++VG T+ D+ LTAR G P+R++L
Sbjct: 160 KTATHTMHSQWITGEKAREDVHVLRSEHQAILVGVQTIIEDDAELTARIPNGRNPIRMIL 219
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVME 339
TL + A + APT V T + + + L + GV+V + DV++
Sbjct: 220 DSTLRIGMSAKVLCDGKAPTWVFTTNASSPEKRTALEALGVKVFVVGSHEGKVKLTDVLQ 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+ E GGTL AS ++ L+++V +VAPK+IGGK APT LGM M+ A
Sbjct: 280 TLGEHAISSVFIEAGGTLNASFLTQQLVNQVIVYVAPKLIGGKEAPTFFEGLGMASMTNA 339
Query: 400 LDLIDICYEQVGPDM-LISGF 419
+ L + VG D+ +I+ F
Sbjct: 340 IPLRKMTASVVGEDVKIIASF 360
>gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1]
gi|375286119|ref|YP_005106558.1| riboflavin biosynthesis protein RibD [Bacillus cereus NC7401]
gi|423354614|ref|ZP_17332239.1| riboflavin biosynthesis protein RibD [Bacillus cereus IS075]
gi|423374079|ref|ZP_17351418.1| riboflavin biosynthesis protein RibD [Bacillus cereus AND1407]
gi|423566922|ref|ZP_17543169.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-A12]
gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1]
gi|358354646|dbj|BAL19818.1| riboflavin biosynthesis protein RibD [Bacillus cereus NC7401]
gi|401086460|gb|EJP94683.1| riboflavin biosynthesis protein RibD [Bacillus cereus IS075]
gi|401094894|gb|EJQ02964.1| riboflavin biosynthesis protein RibD [Bacillus cereus AND1407]
gi|401215130|gb|EJR21849.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-A12]
Length = 370
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 182/378 (48%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G + L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKKRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++EE +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLEE---EAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ S APT ++ + + S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 338 ALSLEIQEMKQVGDDIKI 355
>gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
desulfuricans SSM1]
gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
desulfuricans SSM1]
Length = 384
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 188/381 (49%), Gaps = 33/381 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ +A G+T +P G +I GK+ G GY G AE+ A+ G
Sbjct: 8 MKECVQLALLGKGYTKTNPIVGAIIVKD-GKIIGRGYHEEYGKSHAEINAMNDAVEPLEG 66
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV- 166
A Y+ +EP HG V A+++ I RV +G+ +P + GQ + L G++V V
Sbjct: 67 ADLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVG 126
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
E+L + IIE+ K L ++ P+ K A +LD GKIA
Sbjct: 127 FDEELCASIIEDFTKGVL-----------NQEPYYTLKLAQSLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRIVLTQ 285
+G + WI+S++SR V +R SDA++VG NTV RDNPRL R P ++VL
Sbjct: 164 TKTGDSKWITSESSRVYVHYIRSVSDAILVGVNTVNRDNPRLDVRLIKAEVNPYKVVLDP 223
Query: 286 TLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEY 340
+ + L + S+ + V ++ K+ K L S GVE+V+ ++ + + +Y
Sbjct: 224 FFEIDTNSFLCKNYSNKLILFVKDIKSKEKYDK-LISEGVEIVKDESIGELFDLNFISKY 282
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ + L++L E G A I +G + KV F+APKIIGG++A + + G+ ++ A+
Sbjct: 283 LYSKNILNVLIEGGSETAGRFIDAGKVDKVLFFIAPKIIGGRDAVSSIKGDGVEKIQDAI 342
Query: 401 DLIDICYEQVGPDMLISGFLQ 421
++ + D+LISG ++
Sbjct: 343 EVKMAEVKHFDNDILISGKIK 363
>gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
Length = 370
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 189/380 (49%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A +AG TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALRMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
G+T Y+ +EP G L++ + RVV+ NPL + G + L+ G
Sbjct: 62 KANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPL--VSGSGAKRLQKAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V + ++EE + +N H +++PF K AM+LD
Sbjct: 120 ISV-------TTSVLEEEATA---LNRYFFHYMKTKLPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA ++G + WI+ + +R V R DA+++G NTV DNP LT R +GG H P+
Sbjct: 159 -GKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
RI+L L P +++ APT I+V + + K Y S+ V V++ + RD
Sbjct: 217 RIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGY-ESQAVSVLQMKTSQIEIRD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G +++
Sbjct: 276 LLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKL 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
A+ L +Q+G D+ I
Sbjct: 336 QDAISLQIQEMKQIGDDIKI 355
>gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus WK1]
gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus WK1]
Length = 358
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 179/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A + G TSP+P G ++ G++ G G G AEV A+ G
Sbjct: 2 DEQYMRFALQLAQSARGQTSPNPLVGAVVVKH-GEIVGFGAHLKAGEPHAEVHALRMAGE 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G L++ + RVVV +P + G+ + L+ G+
Sbjct: 61 KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEA +N H +++ P+ KYAM+LD G
Sbjct: 121 VTV------GVLKEEADA----LNEMFFHYISTKTPYVTLKYAMSLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
KIA +G + WI+S+ +R V R DA+VVG T+ D+P LT R G G P+RIV
Sbjct: 159 KIATKTGESKWITSEDARRDVHRERRMHDAIVVGVGTILADDPSLTVRFGYEGKQPIRIV 218
Query: 283 LTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
L L P AN+ APT IVV Q + + Y GV ++ + N D+
Sbjct: 219 LDTHLRTPLHANVVTDQKAPTWIVVGQHVTEEQIKPY-EHAGVHIIRMN-ENKIDIPFLL 276
Query: 342 HD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
H+ R +SI E G + S + S + +V A++AP +IGG AP+ + G M
Sbjct: 277 HELGKRNVMSIFVEGGAHVHGSFLHSRSVQQVIAYIAPMLIGGNEAPSAIGGEGFGRMMD 336
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L E++G D+ I
Sbjct: 337 ALRLQVKHVERIGSDIKI 354
>gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
Length = 361
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 184/385 (47%), Gaps = 33/385 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A A G TSP+P G +I G++ G G G AE+ A+ G
Sbjct: 3 DDVFYMKLAIANAKAMKGQTSPNPLVGAVI-VQQGEIVGMGAHMKAGEPHAEIHALHMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP HG A++++G+ RVV+ ++P + G+ + L+ G+
Sbjct: 62 EKAEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + +EA + +N P H S +P+ + K A++LD
Sbjct: 122 EVD------EGICKQEADR----LNVPFFHFIQSDLPYVILKSAISLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ +R V LR +DAV+ G T+ +D+ L + P+R++
Sbjct: 160 GKIATAQLESKWITGTEARQEVQQLRQEADAVITGVETIIQDDAGLIVKDSIASQPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV------EFDILNSRD 336
L TL +P A A TI+ T +K + L +G V DI D
Sbjct: 220 LDSTLRIPLHAKCLTDRRAETIICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDI---HD 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ +R +S+L E GG ++AS + + L+++ ++AP +IGGK APT G+ ++
Sbjct: 277 VLRMLKERSVMSVLVEAGGNVSASFLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKL 336
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
+A+ D+ Y VG D+ ++ Q
Sbjct: 337 KEAIRPADVEYSMVGKDIKMTMKFQ 361
>gi|385810981|ref|YP_005847377.1| pyrimidine deaminase [Ignavibacterium album JCM 16511]
gi|383803029|gb|AFH50109.1| Pyrimidine deaminase [Ignavibacterium album JCM 16511]
Length = 362
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 186/384 (48%), Gaps = 40/384 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +YI+ +IA + +GF SP+P GC+I T K+ G GY G AE+ A+ +
Sbjct: 3 DESYIQLTLEIAKRGSGFVSPNPMVGCVI-TKNNKIIGAGYHQKYGENHAEINAINSAVE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQ 160
G+T Y+N+EP +G HT V ++++ I RVV+G NPL + G V+ L+
Sbjct: 62 SLEGSTLYVNLEPCSHYG-HTPPCVDKIIESKIKRVVIGTLDVNPL--VSGNGVKKLKKA 118
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++E K C +N T ++P+ K A TLD
Sbjct: 119 GIEVKV-------GVLE---KECTELNKFFFKYITKKIPYVTLKIAQTLD---------- 158
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA S ++ WI+S SR V LR DAV++G T DNP LT R G P R
Sbjct: 159 --GKIADESNYSQWITSAESRKLVHSLRAEYDAVLIGKRTAELDNPLLTVRLTEGRNPWR 216
Query: 281 IVLTQTLNLPEEANLW-DVSDAPTIVVTQR--GARRKFQKYLASRGVEVVEFD-----IL 332
+VL L L + L+ +D TI+VT + +++ K L+ GV ++ L
Sbjct: 217 VVLDSDLKLNTDLKLFTQNTDGKTILVTSKESISKKNKIKKLSGLGVRIIFVKRNGNGNL 276
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N + +++ S+L E G + +S + L V F++PK++G + S +
Sbjct: 277 NLKSILKELGILEITSVLVEGGSEIFSSFLKQNLFDDVLLFISPKLLG--TGISAFSSVR 334
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ ++ +A E VG D+L+
Sbjct: 335 INDLRKAFRFKIKNSEIVGDDILL 358
>gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
49989]
gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
49989]
Length = 368
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 197/381 (51%), Gaps = 35/381 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSF-- 105
Y+ A ++A+K G TSP+P G +I G++ G+G+ G+ AEV+AV+ S
Sbjct: 12 YMSMALELAEKGLGTTSPNPMVGAVI-VKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKDY 70
Query: 106 -CRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP G A S L++ I RV +G+R+P + G + L ++
Sbjct: 71 DIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALIK 130
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+EE C +N + T ++P+ +FK +TLD G
Sbjct: 131 CEV-------GILEE---RCRQLNKVFLKYVTEKMPYVIFKSGITLD------------G 168
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA +G + WI+S+ SR V LR R A++VG TV D+PRLTAR G + P++I++
Sbjct: 169 KIATGTGKSKWITSEESRKDVHLLRSRCSAIMVGIGTVLADDPRLTARFEGAYDPVKIIV 228
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
L LP EA + V + + + +R K ++ L ++GV++++ N D+ ++ +
Sbjct: 229 DSKLRLPLEAKV--VGEDCIVGCCENVSREKIEE-LTNKGVKIIKAG-KNKVDLRKFMAE 284
Query: 344 RGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
L S+L E G TLAAS L+ ++ ++AP I G + EL + ++S A+
Sbjct: 285 LAKLEIDSVLLEGGATLAASMFKEQLVDEIRLYMAPMIFGSGKSFLE-GELDIDDVSDAI 343
Query: 401 DLIDICYEQVGPDMLISGFLQ 421
+ + E++ D+++SG ++
Sbjct: 344 RIEGMKVEKINEDVVLSGNVK 364
>gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
11109]
gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
11109]
Length = 362
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 186/377 (49%), Gaps = 31/377 (8%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A +A + G TSP+P G ++ G + G GY G AEV+A+ GS GAT
Sbjct: 4 ALKLAARGVGCTSPNPMVGAVV-VRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGATL 62
Query: 112 YLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+ +EP + +G + A++ AGI RVV+ +P H+ G L+S+GL V
Sbjct: 63 YVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLV------ 116
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
QS ++ +A +N T PF + K A +LD GKIA +
Sbjct: 117 -QSGLLAKAGSR---LNEAFFKAMTIGQPFVIAKAAASLD------------GKIATRTN 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLTQTLN 288
+ WI+ +R V LR + DA++VG TV D+P+LT R G G P+R+VL L
Sbjct: 161 DSQWITGAPARTWVHRLRHQVDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLR 220
Query: 289 LPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFHD 343
LP A L +S APT +V A + + G EV+ + +R +++ +
Sbjct: 221 LPLNAKVLTQISAAPTWMVCTPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGE 280
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R S+L E G + + +GL+ K F+APK IGG+ AP + LG +++A
Sbjct: 281 RRIQSLLVEGGAEVQGAFFDAGLVDKFHLFLAPKFIGGRQAPGILGGLGASRLAEAQLAH 340
Query: 404 DICYEQVGPDMLISGFL 420
D+ ++G D+LISG+L
Sbjct: 341 DLSIRRIGEDILISGYL 357
>gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
Length = 370
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 179/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ GITRVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT ++ R ++ S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 338 ALSLEIQEMKQIGDDIKI 355
>gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
Length = 379
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 189/391 (48%), Gaps = 35/391 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+ A +A ++G TSP+P G ++ GK+ G G G + AEV A
Sbjct: 6 EVKRMTDQEYMALALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMCAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGERAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 123 RLEETGIEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESQWITGEEARADVHQYRHMHDAILVGVNTVLTDNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H P+R++L L P +++ APT I+V + + K Y S + V +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQ 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT
Sbjct: 279 QIEIQDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G ++ AL L +Q+G D+ I L+
Sbjct: 339 AGFSKLQDALSLTIQEMKQIGNDIKIVATLK 369
>gi|406901092|gb|EKD43851.1| Riboflavin biosynthesis protein RibD [uncultured bacterium]
Length = 364
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 191/378 (50%), Gaps = 28/378 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED +I++ +A K + FT+P+P G +I + GK+ G+GY G AE++A+++
Sbjct: 9 EDIKFIKQTLKLAKKGSSFTAPNPMVGAVIVKN-GKIIGQGYHKKYGGDHAEIEALKSAK 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ GAT Y+++EP G +A+++AGI +++ +P + GQ ++ L G+
Sbjct: 68 TNVVGATMYISLEPCSHFGKTPPCANAVIKAGIKKIICCTMDPNPKVAGQGLKKLNDAGI 127
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+ VLG + +EAR +N + PF V K+A +LD
Sbjct: 128 ET-VLGI-----LSQEARD----LNESFFTYHEKKRPFVVIKFATSLD------------ 165
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA G + WI+++T+R LR R +++VG NTV D+P L A++ P+RI+
Sbjct: 166 GKIATKDGESKWITNETARQYARGLRERYQSILVGINTVLADDPNLGAQNKNQKDPLRII 225
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEY 340
L +L +P + + + D ++ T + A + L G VV+F + + ++
Sbjct: 226 LDPSLQIPLKCQV--LRDKNILIFTSQVADKNKLAKLQKLGYTVVQFKNKQITIKQILAE 283
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ R S+ E G + + + L+ K+++F AP IIGG + + G+ ++ AL
Sbjct: 284 LYKRKIHSVFVEGGSQTIGNFVDAKLVDKIYSFHAPIIIGGHKSIPAIGGEGIKKLKTAL 343
Query: 401 DLIDICYEQVGPDMLISG 418
+++ ++ G + LI G
Sbjct: 344 QIVEPQFKIFGDNFLIFG 361
>gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
Length = 370
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ GITRVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ S APT I+V + K Y S + + + + +DV
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGTDVNKEKIASY-ESENITIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 277 LHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLEIQEMKQIGDDIKI 355
>gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter
acetatoxydans Re1]
gi|438003051|ref|YP_007272794.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Tepidanaerobacter acetatoxydans Re1]
gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter
acetatoxydans Re1]
gi|432179845|emb|CCP26818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Tepidanaerobacter acetatoxydans Re1]
Length = 361
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 189/380 (49%), Gaps = 31/380 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA ++A+K T +P G +I GK+ GEGY G AE++A++ G
Sbjct: 4 DEYFMQRALELAEKGRKTTGENPMVGAVI-VKDGKIVGEGYHKKAGGPHAEIEALKEAGL 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+N+EP CH T AL++A I RVV I +P + G+ L++ G+
Sbjct: 63 NAKGATIYVNLEPC-CHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +A K +N I + + PF + K A ++D
Sbjct: 122 EVSV------GVLKNKASK----LNEVFIKNISEQTPFVIAKIAQSVD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GKIA SSG + WI+ +R + ++R DA++VG TV D+P L R P++I
Sbjct: 160 GKIALSSGKSKWITCDAARKKGHEIRSMYDAILVGIGTVLADDPILDCRLANNAANPVKI 219
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVME 339
VL + +P E+ L + T + + + QK L G +++ + +N ++++
Sbjct: 220 VLDSSAVIPIESKLLQGKGKVILATTAQADKGRLQK-LEEMGADIIMTSQNKVNLNELLK 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
++ G SIL E G + S + GL+ K+ F++PKIIGG + V L + EM
Sbjct: 279 ALYNSGIYSILVEGGAKVFTSFLIEGLLDKLIVFLSPKIIGG-DGKDYVENLFLREMKDV 337
Query: 400 LDLIDICYEQVGPDMLISGF 419
D E+VG D++++ +
Sbjct: 338 YDFYIDDAEKVGEDIMLTMY 357
>gi|423470333|ref|ZP_17447077.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6O-2]
gi|402436749|gb|EJV68777.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6O-2]
Length = 370
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 188/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATVYVTLEPCSHFGKTPPCCELLIERGVQRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IKV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITSEEARADVHQYRHMHDAILVGVNTVITDNPHLTTRILNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDILNS--RD 336
R++L L P +++ APT I+V + + K Y S + V + S +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTKQSEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|365839617|ref|ZP_09380852.1| riboflavin biosynthesis protein RibD [Anaeroglobus geminatus F0357]
gi|364564458|gb|EHM42225.1| riboflavin biosynthesis protein RibD [Anaeroglobus geminatus F0357]
Length = 372
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 34/365 (9%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ A +A G+TSP+P+ GC+I G++ G GY + GT AEV A+ G G
Sbjct: 1 MEEALALARMGLGYTSPNPSVGCVIVKD-GEIVGRGYHHRAGTPHAEVWALREAGERAAG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
+T Y+ +EP +G + ALV+AG+ +VV + +P + G+ LR+ G+ V ++
Sbjct: 60 STVYVTLEPCAHYGRTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPV-IV 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G L K I+ +N I ++ PF K A +LD G A+
Sbjct: 119 GL-LSGKAIK--------INEVFIKNMITQQPFIAVKLAQSLD------------GVTAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHTPMRIV 282
+G + WI++ +R R + LR DA++VG NTV DNP LT+R H H P RI+
Sbjct: 158 RTGKSKWITNDWARKRGYYLRSLYDAILVGINTVEADNPLLTSRTVREGHDAPHQPFRII 217
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDV 337
L T + +A L A T+V+T + + ++ L GVEV+ + D ++ +
Sbjct: 218 LDSTGRIDLQALLVTDKQARTMVITTKHCPVEKKEALERAGVEVLVAPLRDDDRVDLPAM 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ +++G SIL E G T+ + S L+ K++AF+ K+IGG ++ T V LG ++S
Sbjct: 278 VHTLYEKGIHSILVEGGSTVQGTFFDSNLVDKIYAFIGAKVIGGVDSKTSVGGLGADDLS 337
Query: 398 QALDL 402
+++ L
Sbjct: 338 ESVTL 342
>gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
Length = 365
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 192/387 (49%), Gaps = 41/387 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A + G SP+P+ G +I + G+V G+G+ G AE+ A++ +
Sbjct: 3 YMSQALSLAKLAIGQVSPNPSVGAVIVKN-GEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP CH T +++ +GI V + NPL + G+ + L + G++
Sbjct: 62 GATLYVTLEPC-CHQGRTPPCTGSVIASGIKEVYIATLDDNPL--VSGKGKKELEAAGIK 118
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
VH+ + EAR+ +N T+ +PF KYAM+LD G
Sbjct: 119 VHL------GMMEREARQ----MNEAYFKHVTTGMPFVTAKYAMSLD------------G 156
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT- 277
K +G + WIS++ SR +R SD ++ G NT+ +D+P LTAR G H+
Sbjct: 157 KTGTRTGDSKWISNEESRHFAHYIRHISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQ 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
P R+++ P +N++ V TIV +G + ++ G +VVE +++
Sbjct: 217 PTRVIIDDNGRAPLSSNVFHVP-GNTIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVD 275
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ ++ Y G S+L E GG + S L+ KV FVAP IIGGK+A PV+ +G
Sbjct: 276 LKALLRYLGQNGVTSVLVEGGGIVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGA 335
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
++ + DI G D+LISG++
Sbjct: 336 ELITDSAKFKDITTTIFGQDVLISGYV 362
>gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
Length = 379
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ GITRVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G P+R++L L P +++ S APT I+V + K Y S+ + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT
Sbjct: 280 IEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFSTLQDALSLEIQEMKQIGDDIKI 364
>gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
Length = 387
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 198/390 (50%), Gaps = 34/390 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY G+ AEV A+
Sbjct: 23 FDRAVAEFFMRIALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGYHKKAGSAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA G+ +GA Y +EP D +G S A+++AG+ RV+ +P + G+ V +R
Sbjct: 82 EAAGARAKGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMR 141
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
GL+V L + E+A + +N P + +P+ K A+TLD
Sbjct: 142 RAGLKV------LTGVLAEDADR----LNRPFFKMIRTGLPWVTLKAAVTLD-------- 183
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ +R V LR D ++VG NTVR+D+P+LT R GGG
Sbjct: 184 ----GKLATATGDSRWVTGAPARAWVHRLRDSVDVILVGANTVRKDDPKLTTRLPGGGGK 239
Query: 277 TPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEF----D 330
P+R+V+ L L P S A T+V T RK +++LA +GV+V +
Sbjct: 240 DPLRVVVDSHLRLSPGYTIFTQRSAARTVVATLEDPEGRKARRFLA-QGVDVWQLREKAG 298
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ + ++ G+ ++ E G + S + L + F+APK+IG + +
Sbjct: 299 QVDLKALLRRLAKGGHNHVMVEGGAEMYGSFLRGRLADSLALFLAPKLIGSPGL-SWAGD 357
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG+ EM+QAL + D+ +E+ G D+L+ L
Sbjct: 358 LGVKEMAQALAVKDLAFERHGDDILLQALL 387
>gi|381181073|ref|ZP_09889909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Treponema
saccharophilum DSM 2985]
gi|380767078|gb|EIC01081.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Treponema
saccharophilum DSM 2985]
Length = 379
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 189/391 (48%), Gaps = 49/391 (12%)
Query: 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAE---VQAVEAG 102
A ++ A + A K GFT P+P G ++ G V GY + G AE ++
Sbjct: 8 AEFMLLAINEAKKGEGFTHPNPLVGAVLVKD-GIVLATGYHHRYGDLHAERDCLKNAREK 66
Query: 103 GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+ +EP CH +A+++AGI RVV+G R+P + G+ V L++
Sbjct: 67 GVDTKGATMYVTLEPC-CHTGKQPPCTNAIIEAGIARVVIGSRDPNNLVNGKGVEQLKAA 125
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V +Q + EE C +N + T ++P+ + KYAMT D
Sbjct: 126 GIEV------VQDFLKEE----CDKLNEVFFYYITHKMPYVILKYAMTAD---------- 165
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---HT 277
G+ A SG + WI+ + +R+ V R AV+ G TV+ D+P LT R G H
Sbjct: 166 --GRTATVSGKSKWITGEKARENVHRTRASVAAVMTGIGTVKADDPLLTCRLDDGKEHHQ 223
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVT------QRGARRKFQKYLASRGVEVVEFDI 331
P RIV+ L +PEE+ L + + V RR ++L +GVE F +
Sbjct: 224 PERIVIDTNLEIPEESALVKSAKTSKVTVIYGFFNPHTSDRR---EWLFHQGVETASFSL 280
Query: 332 -----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG-KNAP 385
+N ++V+EY G SIL E GG LAAS + ++V A+VAPKI GG +
Sbjct: 281 DEKHRINIKEVLEYLASIGIDSILVESGGELAASVLP--FANEVHAYVAPKIFGGVSDIR 338
Query: 386 TPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
P+ G+ A+ + EQ G D+L+
Sbjct: 339 VPIRGDGVDSPDDAVQFSLLGVEQFGDDVLL 369
>gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
100599]
gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
100599]
Length = 368
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 195/384 (50%), Gaps = 29/384 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D+ Y+ A ++A + G TSP+P G +I G + G G G AEV A+ G
Sbjct: 3 QDSKYMDLALELARSARGQTSPNPMVGAVIVKD-GTIVGMGAHLRAGEPHAEVHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G AL+ A + RVVV +P + G+ + LR+ G+
Sbjct: 62 EKAQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + EE K+ +N H +R PF K A TLD
Sbjct: 122 EVAV-------GVREEEAKA---LNEVFFHYIQTRRPFVTVKTASTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG---GHTPM 279
GKIA+ +GH+ WI+ +R V +LR + DA++VG T+ D+P LTAR G P+
Sbjct: 160 GKIASFTGHSRWITGAEARAEVHELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPV 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-DILNSRDVM 338
R++L L P +A++ +DA T + A ++ Q+ LA+RGV+V+ + V+
Sbjct: 220 RVILDSQLRTPLDAHVVQNADAKTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVL 279
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + G S+L E G + S + + I KV + +A K+IGG +AP+P G M +
Sbjct: 280 DTLGELGITSLLVEGGQEVNGSFLQARAIQKVVSHIALKLIGGSSAPSPFGGQGFSTMGE 339
Query: 399 ALDLIDICYEQVGP-DMLISGFLQ 421
A+ L ++ +G D+ ISG+ Q
Sbjct: 340 AVQLANVTITPIGKSDVQISGYPQ 363
>gi|456014198|gb|EMF47813.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Planococcus
halocryophilus Or1]
Length = 367
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 180/380 (47%), Gaps = 35/380 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A G T P+P G +I ++ G G G AE+ A+ G R
Sbjct: 7 YMNLALTNAQTLKGQTDPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGDMSR 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP G A++ AGIT+V+V +P + G VR L+ G++V V
Sbjct: 66 GATIYVTLEPCSHFGRTGPCAQAIIDAGITKVIVATLDPNPIVAGNGVRMLKEAGIEVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEA K + N ++ ++ PF K A TLD GKIA
Sbjct: 126 GVRE------EEAIKINEVFNKFIV----TKTPFVTLKAASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
S + WI+++ +R V +R ++ A++VG TV D+P LTAR G P+RIVL T
Sbjct: 164 THSLDSKWITAEEARLDVHLMRSQNMAILVGVGTVIEDDPELTARISNGRNPLRIVLDST 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM-------E 339
L +P ++ + T + T + ++ L GV + E S D
Sbjct: 224 LRIPLDSKIVTDGIVDTWIFTSKNYNADKRQALEKLGVSIFE----TSHDTQVDVVDVVR 279
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
++G S+ E GGT+ A+ + + LI KV + APK++GG APT + G+ M A
Sbjct: 280 TLGEKGISSLFIEGGGTINAAFLENDLIDKVVFYFAPKLVGGTMAPTFIEGTGVEWMKDA 339
Query: 400 LDLIDICYEQVGPDMLISGF 419
+DL D + +VG D +G+
Sbjct: 340 IDLRDGEFSKVGKDFKFTGY 359
>gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
MPA1U2]
gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
MPA1U2]
Length = 367
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 33/379 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A A G T P+P G +I ++ G G G AE+ A+ G +
Sbjct: 7 YMNLALTNAQTLKGQTDPNPLVGSVIVNDN-RIVGIGTHLKAGEPHAEIHALRMAGDMSQ 65
Query: 108 GATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+ +EP G A++ AGI +VV+ +P + G VR L+ G++V V
Sbjct: 66 GATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEAGIEVIV 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ EEA K + N ++ ++ PF K A TLD GKIA
Sbjct: 126 GVRE------EEAIKMNEVFNKFIV----TKTPFVTLKAASTLD------------GKIA 163
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
S + WI+++ +R V +R + A++VG TV D+P LTAR G P+RIVL T
Sbjct: 164 THSLDSKWITAEEARLDVHLMRSQHMAILVGVGTVIEDDPELTARISNGRNPIRIVLDST 223
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE------FDILNSRDVMEY 340
L +P ++ L T + T + + ++ L GV + E D++ DV+
Sbjct: 224 LRIPLDSKLVTDGIVDTWIFTSQNYDAEKRQALEELGVLIFETSHDTQVDVI---DVVRT 280
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
++G S+ E GGT+ A+ + + LI KV + APK++GGK APT + G+ M A+
Sbjct: 281 LGEKGISSLFIEGGGTINAAFLENDLIDKVVFYFAPKLVGGKLAPTFIEGTGVEWMKDAI 340
Query: 401 DLIDICYEQVGPDMLISGF 419
+L D + +VG D +G+
Sbjct: 341 ELRDGEFSKVGKDFKFTGY 359
>gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
Length = 362
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 168/338 (49%), Gaps = 26/338 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A + G T P+P GC++ + G++ G GY G AEV A+E G
Sbjct: 3 DVGYMSLALSLAKRRKGLTHPNPTVGCVV-VNEGEIVGLGYHEGAGHPHAEVVALEQAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+G+T Y+ +EP G + AL++AGI + VV +++P + G+ + LR GL
Sbjct: 62 KAKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLD 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + EEAR+ +N T + P+ K A TLD G
Sbjct: 122 VEV------GVLEEEARE----LNEDFFTFITMKRPYVTLKLAQTLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
K+A SG + WISS SR LR + AV+VG NT RDNP LT RH G P+RIV
Sbjct: 160 KVATPSGDSKWISSPESRRFAHRLRSEATAVLVGLNTFLRDNPSLTIRHIPFGRQPLRIV 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
+ L +P ++NL A T+VV R K + L + GV+++ + + ++++
Sbjct: 220 IDPELEIPMDSNLVSDGMAQTLVVFSRRDPAKESELLGA-GVQLLYMEKIELGELLKELA 278
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
R L +L E G + + GL ++ F AP+++G
Sbjct: 279 SRDVLHLLVEGGAYTVSQFLKEGLWDRLVVFQAPRVMG 316
>gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlorobium phaeovibrioides DSM 265]
gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
phaeovibrioides DSM 265]
Length = 357
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 172/338 (50%), Gaps = 30/338 (8%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA--GGSFCRG 108
R ++A + AG SP+P G +I G+V GEGY A G AEV A+ + G+ R
Sbjct: 3 RCLELARQGAGAVSPNPMVGSVIVCD-GEVVGEGYHEAFGGPHAEVNAIASVGDGAVLRR 61
Query: 109 ATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
+T Y+N+EP HG + L+ + GI RVV+G +P + G+ V LRS G++V
Sbjct: 62 STLYVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEV--- 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
L+ + E+++ L A + A R PF K A TLD G+IA
Sbjct: 119 ---LEGVLEAESKR---LNEAFMTSHAEGR-PFVALKLAETLD------------GRIAT 159
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+ G + WI+ +R V LR DAV+ G T+R D RLT RH G P+R+VL +L
Sbjct: 160 ADGQSKWITGDAARLEVHRLRCSYDAVLSGAATIRADGSRLTVRHCAGRNPLRVVLDPSL 219
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVMEYFHD 343
+L +A ++ + +Q A+ GVE+V + L+ R V++ H
Sbjct: 220 SLSPDAPVFGDEAKTLLFASQSMEGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHR 279
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
R LS+L E GG L+AS L+ K++ F+APK+ GG
Sbjct: 280 RQVLSVLVESGGRLSASLARERLLDKLYMFIAPKLFGG 317
>gi|423522050|ref|ZP_17498523.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA4-10]
gi|401175799|gb|EJQ82998.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA4-10]
Length = 370
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 188/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIIGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ R+V+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRIVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTQRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITSEEARADVHQYRHMHDAILVGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDILNS--RD 336
R++L L P +++ APT I+V + + K Y S + V + S +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTKQSEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
Length = 370
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 181/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G + L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKKRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++EE +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLEE---EAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ S APT ++ + + S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 338 ALSLEIQEMKQVGDDIKI 355
>gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. BAV1]
gi|452203863|ref|YP_007483996.1| Riboflavin biosynthesis protein RibD [Dehalococcoides mccartyi
DCMB5]
gi|452205360|ref|YP_007485489.1| Riboflavin biosynthesis protein RibD [Dehalococcoides mccartyi
BTF08]
gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. BAV1]
gi|452110922|gb|AGG06654.1| Riboflavin biosynthesis protein RibD [Dehalococcoides mccartyi
DCMB5]
gi|452112416|gb|AGG08147.1| Riboflavin biosynthesis protein RibD [Dehalococcoides mccartyi
BTF08]
Length = 365
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 191/387 (49%), Gaps = 41/387 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ +A +A + G SP+P+ G +I + G+V G+G+ G AE+ A++ +
Sbjct: 3 YMSQALSLAKLAIGQVSPNPSVGAVIVKN-GEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP CH T +++ +GI V + NPL + G+ + L G++
Sbjct: 62 GATLYVTLEPC-CHQGRTPPCTGSVIASGIKEVYIATLDDNPL--VSGKGKKELEDAGIK 118
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
VH+ + EAR+ +N T+ +PF KYAM+LD G
Sbjct: 119 VHL------GMMEREARQ----MNEAYFKHVTTGMPFVTAKYAMSLD------------G 156
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT- 277
K +G + WIS++ SR +R SD ++ G NT+ +D+P LTAR G H+
Sbjct: 157 KTGTRTGDSKWISNEESRHFAHYIRHISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQ 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
P R+++ P +N++ V TIV +G + ++ G +VVE +++
Sbjct: 217 PTRVIIDDNGRAPLSSNVFHVP-GNTIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVD 275
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ ++ Y G S+L E GG + S L+ KV FVAP IIGGK+A PV+ +G
Sbjct: 276 LKALLRYLGQNGVTSVLVEGGGIVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGA 335
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
++ + DI G D+LISG++
Sbjct: 336 ELITDSAKFKDITTTIFGQDVLISGYV 362
>gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
Length = 379
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 183/385 (47%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ GITRVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G P+R++L L P +++ S APT I+V + K Y S + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESENITIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT
Sbjct: 280 IEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFSTLQDALSLEIQEMKQIGDDIKI 364
>gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 379
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + I+E LL+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGILE---AEALLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GKIA +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + ++ S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKAKISSYESKNIAIFQMETKY 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|384210138|ref|YP_005595858.1| riboflavin biosynthesis protein RibD [Brachyspira intermedia PWS/A]
gi|343387788|gb|AEM23278.1| riboflavin biosynthesis protein RibD [Brachyspira intermedia PWS/A]
Length = 369
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 186/384 (48%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y++ A + A K GFTSP+P G +I GKV G GY G AE+ A + G
Sbjct: 9 YMKMAIEEAKKGEGFTSPNPLVGAVIVKD-GKVIGIGYHKKCGENHAEINAFLDAKEKGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
A Y+ +EP +G A+++ + RV++G + + G ++ L+ G++
Sbjct: 68 NVEDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C +N + ++ PF V KYAMT+D G
Sbjct: 128 VIV-------NVLEE---ECRKLNEVFFYYIANKRPFIVMKYAMTID------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 166 KIATVSGKSKWITSEKTREHSHRFRNKYSAIMVGINTVIEDNPTLNCRLPNTRNPIRIIL 225
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVM 338
+L + +N+ + + T + T +K K L S G+++++ + N +D+M
Sbjct: 226 DSSLKIDLYSNICKTAKEIKTFIATISDDDKKI-KELESFGIDIIKTENDNGKVSLKDLM 284
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ S+ E G L AS + L++K ++APKI GG A +P+ G+ + +
Sbjct: 285 RILGEEKDIDSVYVEGGAALHASLLKEKLVNKALIYIAPKIFGGLEAKSPIGGEGIDDPN 344
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A+ L + ++ D+ + +LQ
Sbjct: 345 DAVKLTEGSITKIEDDLFLEYYLQ 368
>gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273]
gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
luteolum DSM 273]
Length = 366
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 184/386 (47%), Gaps = 33/386 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG- 103
DA ++ R ++A + AG SP+P G LI G V GEGY G AEV A+ A
Sbjct: 6 DACHMARCIELALQGAGSVSPNPMVGSLIVCD-GSVIGEGYHMQCGGPHAEVNAIAAVSD 64
Query: 104 -SFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
S +T Y+N+EP G S L+ + I RVVVG R+P + G+ + LR G
Sbjct: 65 PSLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLRDSG 124
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V+ ++E CL +N I T PF K A TLD
Sbjct: 125 VDVY-------EGVLE---AECLRLNEAFITSHTKGRPFVALKIAETLD----------- 163
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
G+IA + G + WI+ +R V LR DAV+ G TV D +LT R G P+R+
Sbjct: 164 -GRIATADGASKWITGSEARREVHRLRSTYDAVLAGAATVLLDRAQLTVRDVEGRNPLRV 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA-SRGVEVVEFDI----LNSRD 336
VL L +P +A ++ SDAPT+V + + A +G+EVV L+
Sbjct: 223 VLDSGLRVPFDAPVFS-SDAPTLVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQ 281
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ H R LS+L E G L+A+ + +GL K+ F+APK+ G P+ + L +
Sbjct: 282 VLRELHRRDVLSLLVESGSRLSAAFVRAGLADKLLMFIAPKLFGADALPS-FAPLAVEAP 340
Query: 397 SQALDLIDICYEQVGPDMLISGFLQP 422
S A+ L + G D+L+ + QP
Sbjct: 341 SGAVQLEFGQSKAFGRDILLEAYFQP 366
>gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
DSM 271]
gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
DSM 271]
Length = 373
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 182/369 (49%), Gaps = 36/369 (9%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S A D Y+ R ++A K AG SP+P G +I +V GEG+ G AEV A+
Sbjct: 7 STARDEYYMHRCLELARKGAGLVSPNPMVGSVIVVED-RVVGEGFHERYGGPHAEVNALA 65
Query: 101 A--GGSFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRAL 157
+ S +T Y+N+EP +G S L+ I RVVVG +P + + G+ + L
Sbjct: 66 SVSDASLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKL 125
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R G++V + +S+ + EA I T +PF V K A T+D
Sbjct: 126 RQAGVEVTIGVLQRESEALNEA----------FIKSHTISMPFVVLKTAQTID------- 168
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+IA +SG + W++ SR V +R DAV+ +TV DN RLT RH G
Sbjct: 169 -----GRIAVASGESKWVTGAESRREVHRMRSVHDAVMTTSSTVIADNSRLTVRHCEGRN 223
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQR--GARRKFQKYLASRGVEVV----EFDI 331
P+R+VL + L +P + ++D +A TI+ T G+ K + L + GV V + D
Sbjct: 224 PVRVVLDRLLRVPLSSAIFD-GEAKTILYTSNALGSSEK-ARALKAMGVIVCAAGDDGDF 281
Query: 332 LNSRDVMEYFHDR-GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
L+ V++ HD LSI+ E GGTLA + I L+ ++ FVAPK+ G + V
Sbjct: 282 LDLSAVLKSLHDEHALLSIMVEAGGTLAGALIRHRLVDRIVWFVAPKLFGA-DGLGAVGS 340
Query: 391 LGMVEMSQA 399
LG+ + A
Sbjct: 341 LGLQSVDDA 349
>gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 355
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 34/379 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A K G +P GC+I K+ G G+ G AEV A+ G
Sbjct: 6 YMQLALDLAQKGKGRVYTNPLVGCVIVKDN-KIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP + +G T + +++AGI RV + P ++ G L ++VH
Sbjct: 65 GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAV--PDSNVSG-GREILERNNIKVH- 120
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
E L K +S +L+ L H P K AMTLD GKIA
Sbjct: 121 --EGLLKK------QSRILIKDYLKHLKNK--PKVSIKAAMTLD------------GKIA 158
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ WI+S+ SR+ V +R R DAV+VG NT +DNP LT P+R+V+
Sbjct: 159 TYEYDSKWITSEKSRNFVHKMRARYDAVLVGMNTALKDNPILTTHSKNLKNPIRVVIDSG 218
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD----VMEYFH 342
L LP+ +L+D PT++V KYL G+ + +I ++ +++
Sbjct: 219 LKLPKSHHLFDAC-VPTVIVYDLNITN-IPKYLNREGIILSPVNIDAAKKDFSVIIKKLD 276
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
IL E G + ASA+ S ++ ++ F+APKI GG+ A + V G+ +MS++L +
Sbjct: 277 SLSIKRILIEGGSEIIASALFSDVVDDIYFFIAPKITGGRTAISVVGGTGVKKMSESLCI 336
Query: 403 IDICYEQVGPDMLISGFLQ 421
++ +++GPD+LI+G ++
Sbjct: 337 KNMKVKKIGPDLLITGQIR 355
>gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
Length = 367
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 185/379 (48%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A + A K GF +P+P G +I + G V G G G AE A+
Sbjct: 3 DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKN-GCVIGRGAHERYGGPHAERNAIAHCTE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ + P CH T +++ GI RVV+G +P + +++ LR G+
Sbjct: 62 DLQDATLYVTLTPC-CHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGV 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + I+++ C +N H P+ V KYAMT+D
Sbjct: 121 EV-------TTGILQQ---ECDALNDAFFHFIRIHRPYVVMKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK+A +SG + WI+ + +R+RV R R A++ G TV D+P LT R GG P+RIV
Sbjct: 159 GKVATASGKSKWITGELARERVHLDRKRYAAILTGIGTVLADDPLLTCRIPGGRDPVRIV 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L +P A + + TI+ T G +K Q L +G EV++ + N R +
Sbjct: 219 CDTKLRIPLTAQIVKTAAKTRTIIATGSGDNKK-QSLLKQKGCEVLKMTVENGRIDLKAL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M + SIL E G + ++A+ SG+++K+ A+VAPK+ GG+ A TPV G+
Sbjct: 278 MRRLGEMAIDSILMEGGPQMNSAALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPE 337
Query: 398 QALDLIDICYEQVGPDMLI 416
A L ++G D+L+
Sbjct: 338 AAWRLSAPVITKLGQDILL 356
>gi|423452581|ref|ZP_17429434.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5X1-1]
gi|401139763|gb|EJQ47321.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5X1-1]
Length = 370
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 188/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IKV--------TTGVLEAEAT--LLNRYFFHYMKTKQPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHMHDAILVGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ S APT I+V + + K Y + V + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDSLAPTWIIVGKDVNKEKIASY-ECNNIAVFQMNTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
Length = 370
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 187/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMCAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEETG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESQWITGEEARADVHQYRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ APT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
2489]
gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
2489]
Length = 390
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 193/380 (50%), Gaps = 44/380 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE--AGGSF 105
+++RA ++A + G P+P G +I GK+ EG+ + G AE A++ A +
Sbjct: 18 FMQRAIELAKRGGGKVHPNPLVGAVIEKD-GKIIAEGFHHEYGNLHAERDALKNAAEKNA 76
Query: 106 C-RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
C RGA Y+ +EP CH A++ AGI VV+G R+P + G+ V L + G+
Sbjct: 77 CVRGANLYVTLEPC-CHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGI 135
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
++ D + C +N + T++ PF + KYA + D
Sbjct: 136 KIF---RDFM-------KAECDSLNEIFFYYITAKRPFVIVKYAQSAD------------ 173
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG--HTPMR 280
GK + SSG + WI++++SR+ V LRG + AV+ G TV +D+P LT R G + P+R
Sbjct: 174 GKTSLSSGESKWITNESSREYVHYLRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVR 233
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVM 338
IVL L +P E+NL + + P I+ T + +K L +G +V++ + +S D++
Sbjct: 234 IVLDTELKIPLESNLVKTANEVPLIIFTCSDSAKK--SALEEKGAKVIQIEKKDSHIDIL 291
Query: 339 EYFHDRGYLSI---LWECGGTLAASAISSG-----LIHKVFAFVAPKIIGGKNAPTPVSE 390
+ G SI L E GG+L +S G L++KV FVAPKI+GG N T S
Sbjct: 292 QVLKKLGEFSIDSVLVESGGSLNSSLFFYGKEKKCLVNKVLCFVAPKILGGING-TVHSP 350
Query: 391 LGMVEMSQALDLIDICYEQV 410
+ +E S L +++ + V
Sbjct: 351 VQGIECSSLLSCVNLALKNV 370
>gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
CNS-205]
gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
CNS-205]
Length = 353
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 192/381 (50%), Gaps = 53/381 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC++ G+V GEG+ G AE+ A+ G RG
Sbjct: 10 MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVALAQAGERARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S ALVQAGI RVV+ + +P + G A LR+ G++V
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDPNRAASGGAA-TLRAAGIRV--- 125
Query: 168 GEDLQSKIIE-EARKSCLLVNAPLIHRATSRV-PFSVFKYAMTLDVILPGVLSWMLTGKI 225
DL + E EA L + T R P+ ++KYA TLD G+
Sbjct: 126 --DLGVRAAEAEAGNVAWLTS-------TRRGWPYVIWKYAATLD------------GRS 164
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--GGG---HTPMR 280
AA+ G + WI+S+ +R V LRG DAV+ G TV D+PRLT R+ G P+R
Sbjct: 165 AAADGTSMWITSEVARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLR 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVT--QRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
+V+ T P A + D APT + T + G + + LA ++
Sbjct: 225 VVVDSTGRTPPGARVRD-DAAPTWIATAEEVGVDPEGRVELAG---------------LL 268
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
H RG + L E G LA + +++GL+ K+ +VAP+++G P ++E G+ +++
Sbjct: 269 AALHQRGVRAALVEGGPRLAGAFLAAGLVDKIVGYVAPRLLG--AGPAALTEAGVTTITE 326
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+D + QVGPD+ I+
Sbjct: 327 AIDCEVVDVTQVGPDLRITAL 347
>gi|350546840|ref|ZP_08916202.1| riboflavin biosynthesis protein RibD [Mycoplasma iowae 695]
gi|349503581|gb|EGZ31162.1| riboflavin biosynthesis protein RibD [Mycoplasma iowae 695]
Length = 395
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 195/384 (50%), Gaps = 36/384 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+++A ++A + G +P+P G +I + K+ GEG+ G + AE+ A
Sbjct: 35 KDIEYMKKAIELAYQGEGNVNPNPMVGAVIVKN-DKIIGEGFHEYFGKEHAEINAFNKLT 93
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
C AT Y+ +EP CH T V ++ I RVV+G +P + G++V L++
Sbjct: 94 ESCENATMYVTLEPC-CHFGKTPPCVDEIINKKIKRVVIGTLDPNPLMSGKSVDILKNNN 152
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V+G ++E+ K+ + H ++ PF KYAMT+D
Sbjct: 153 IEV-VVG------VLEQECKNLI---KEFSHFIKNKKPFITLKYAMTID----------- 191
Query: 222 TGKIAASSGHAAWISSKTS--RDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279
GK+A + + WIS++ + +RV R ++ A++VG NTV D+P LT R P+
Sbjct: 192 -GKVATRTNKSKWISNEKALFSNRVD--RYKNTAIMVGINTVLIDDPLLTTRIKNKRNPI 248
Query: 280 RIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS---- 334
RI+ L +P +N+ ++ TIV T K +K L + + ++ + N+
Sbjct: 249 RIICDTNLRIPLTSNIVKTANEVKTIVATCCEDVEKAEKLL-EKNIAILNIKMKNNHLDL 307
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
D++E G SI+ E TLA++ I LI+ + +V PKI GGK+A +P+ +G+
Sbjct: 308 NDLVEKLGAIGIDSIILEGARTLASNFIEEKLINYLKIYVCPKIFGGKDAVSPIGGIGVD 367
Query: 395 EMSQALDLIDICYEQVGPDMLISG 418
E S A+ +I+ + D++I G
Sbjct: 368 EPSDAIKIINQKVSSIDDDVVIEG 391
>gi|423582322|ref|ZP_17558433.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD014]
gi|423635061|ref|ZP_17610714.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD156]
gi|401213201|gb|EJR19942.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD014]
gi|401279047|gb|EJR84977.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD156]
Length = 370
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + I+E LL+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGILE---AEALLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + ++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|445062292|ref|ZP_21374699.1| riboflavin biosynthesis protein RibD [Brachyspira hampsonii 30599]
gi|444506333|gb|ELV06688.1| riboflavin biosynthesis protein RibD [Brachyspira hampsonii 30599]
Length = 371
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 187/384 (48%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
YI+ A + A K GFTSP+P G +I KV G GY G AE+ A + G
Sbjct: 9 YIKMAIEEARKGEGFTSPNPLVGAVIVKDD-KVIGIGYHQKYGENHAEINAFLDAQKKGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA+ Y+ +EP +G A+++ I +V++G + + G ++ L+ G++
Sbjct: 68 DVEGASIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKEAGIE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+ C +N + +++PF V KYAMT+D G
Sbjct: 128 V----------IVNVLEDECRKLNEVFFYYIANKIPFVVMKYAMTID------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SSG + WI+S+ SR+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 166 KIATSSGKSKWITSEKSREHSHRFRNKYSAIMVGINTVLEDNPTLNCRLPNTRNPIRIIL 225
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L + +N+ + + T + T +K K L S G+E+++ + N+R ++M
Sbjct: 226 DSSLKIDLNSNICKTAKEIKTFIATISNDDKKI-KELESLGIEIIKTESYNNRVSLKELM 284
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ S+ E G +L AS I L++KV ++APKI GG A +PV G+ + +
Sbjct: 285 KILGEEKNIDSVYVEGGASLHASLIEERLVNKVLVYIAPKIFGGVKAKSPVGGEGIDDPN 344
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A L ++ D+ + +L
Sbjct: 345 NAFKLKIGDITKIDDDLFLEYYLN 368
>gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
Length = 370
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 181/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ GITRVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ APT I+V + K Y S+ + + + + +DV
Sbjct: 218 VILDTHLKTPPSSHVITDGLAPTWIIVGTDVNQEKIASY-ESKNITIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 277 LHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLEIQEMKQIGDDIKI 355
>gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
Length = 379
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 39/393 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
L G++V VLG + L+N H ++ PF K AM+LD
Sbjct: 123 ILEEAGIKVTTGVLGAE------------ATLLNRYFFHYMKTKRPFVTIKTAMSLD--- 167
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-- 271
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R
Sbjct: 168 ---------GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIP 218
Query: 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFD 330
+GG H P+R++L L P +++ PT I+V + ++ K Y S + V +
Sbjct: 219 NGGKH-PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVSKEKIASY-ESNNIAVFQMK 276
Query: 331 I--LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
+ +DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT
Sbjct: 277 TQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLF 336
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G ++ AL L +Q+G D+ I L+
Sbjct: 337 GGAGFSKLQDALSLTIQEMKQIGNDIKIVATLK 369
>gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
Hxd3]
gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
Hxd3]
Length = 363
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 191/387 (49%), Gaps = 34/387 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++ A +A++ GFTSP+P G ++ V +G+ A G AEV A++ G
Sbjct: 2 DDTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVG-QGFHAAAGKPHAEVVAIDDAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGA Y+ +EP + H T + AGI RVVV + H+ G ++ L S+G
Sbjct: 61 ELARGADLYVTLEPCN-HTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRG 119
Query: 162 LQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V V + E K IE K T+ PF K AMTLD
Sbjct: 120 IAVTVGVCEAEAKKQIEWFAKY-----------VTTGRPFVTVKCAMTLD---------- 158
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--P 278
G+IA +G + W++ + +R V +R SDA++VG T DNPRLTAR G T P
Sbjct: 159 --GRIATRTGDSKWVTGEAARAFVHRMRHASDAILVGVGTANADNPRLTARVEGMRTRDP 216
Query: 279 MRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGV---EVVEFDILNS 334
MRIVL L++ E+A ++D+ S A T++V G +K + L + + ++
Sbjct: 217 MRIVLDTKLSIREDAAMFDLDSSAETLIVVGPGHDKKKRDRLKGKARFFDAALAIGRIDM 276
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+M+ G S+L E GG + +A ++G++ KV F APKI+GG + + G
Sbjct: 277 AGLMDGLGKMGITSLLIEGGGQVIGAAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQE 336
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
+M AL + ++ + D+LI G++
Sbjct: 337 QMKNALPVRNVSVTRFDDDILIEGYVS 363
>gi|402555758|ref|YP_006597029.1| riboflavin biosynthesis protein RibD [Bacillus cereus FRI-35]
gi|401796968|gb|AFQ10827.1| riboflavin biosynthesis protein RibD [Bacillus cereus FRI-35]
Length = 370
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 181/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G + L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKKRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ S APT ++ + + S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGKDVNTEKIASYESENIAIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 338 ALSLEIQEMKQVGDDIKI 355
>gi|423389574|ref|ZP_17366800.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1X1-3]
gi|401641665|gb|EJS59382.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1X1-3]
Length = 370
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 187/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEETG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESQWITGEEARADVHQYRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ APT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|338731395|ref|YP_004660787.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thermotoga
thermarum DSM 5069]
gi|335365746|gb|AEH51691.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermotoga thermarum DSM 5069]
Length = 367
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 190/385 (49%), Gaps = 31/385 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A +A K TSP+P G +I GK+ GY G AE+ A+ +
Sbjct: 6 YMSLALKLAKKGKYTTSPNPMVGAVIVKD-GKILATGYHKKAGQPHAEINALSKLNFQAQ 64
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
Y+ +EP +G A++++GI +VV+ +P + G+ V L++ G++V V
Sbjct: 65 NCEMYVTLEPCSHYGRTPPCADAIIRSGIRKVVIATLDPNPLVNGKGVEKLKNAGIEV-V 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
G ++EE K +N T+++PF K A TLD GKIA
Sbjct: 124 CG------VLEEKAKK---LNEKFFKYITTKIPFVALKIAQTLD------------GKIA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-PMRIVLTQ 285
+G + WI+S+ SR+ V LR DAV+ G T+ +D+P+L R + P+RI+L
Sbjct: 163 LKNGESKWITSEKSREYVHKLRMEYDAVLTGIGTILKDDPQLNVRLKKVYKQPLRIILDS 222
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEYF 341
L +P A + + I+ T + K ++ L S+GVEV+ + I++ ++
Sbjct: 223 KLKIPLSAKVLEDPSKVIILTTALADKEKLEE-LRSKGVEVIITNEKNGIVDLESALKIL 281
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
++ S++ E G TL S + L K++ F+APKI G ++ + SELG+ ++S++
Sbjct: 282 GEKKITSVMVEAGPTLLTSFLKESLFDKIYLFIAPKIFGA-DSKSVFSELGLEDISKSQK 340
Query: 402 LIDICYEQVGPDMLISGFLQPIPDL 426
+++G D+L+ + + + L
Sbjct: 341 FSLESVKKIGEDLLLELYPKQLKKL 365
>gi|337746993|ref|YP_004641155.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
KNP414]
gi|336298182|gb|AEI41285.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
KNP414]
Length = 406
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 185/381 (48%), Gaps = 29/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A + G T +P GC++ G+V G G +G AE+ A+ G+
Sbjct: 41 DEMYMRIALQLAAAAVGQTGINPVVGCVL-VKDGRVVGMGAHLKRGDAHAEIHALNMAGA 99
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+TAY+ +EP HG S L++ G+ RVVV +P + G + LR+QG++
Sbjct: 100 EAAGSTAYVTLEPCSHHGRTGPCSDRLIREGVKRVVVAAVDPNPVVAGSGIARLRAQGIE 159
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +S+ + EA ++ +R PF K A TLD G
Sbjct: 160 VTEGVLAAESEALNEAFNKYIV----------TRRPFVTVKTASTLD------------G 197
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
K+AA+ G + WI+ + +R V LR R A++ G TV D+P+LT R G +P+RI+
Sbjct: 198 KVAAAGGDSKWITGEAARGYVHTLRHRHQAILTGVGTVMADDPQLTTRLPVPGLSPVRII 257
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L +P E+ L +AP IV+T A ++ L + GV+V++ + D+
Sbjct: 258 ADSMLRIPLESKLLHDGEAPVIVLTTAEAPEDRRRALEALGVQVIDCGPGPAVDLEAALA 317
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKII-GGKNAPTPVSELGMVEMSQ 398
G L S+L E GG LA + + L K+ F APKII GG AP G M Q
Sbjct: 318 RLGELEIGSVLVEAGGKLAGAFLERRLADKLVLFFAPKIIGGGAEAPGTFDFPGFRAMRQ 377
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+ L + E G D+ +G+
Sbjct: 378 AIRLERMTVETFGEDVCFTGY 398
>gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
Length = 379
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + I EA + L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV--------TTGILEAEAT--LLNRFFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKY-LASRGVEVVEFDI 331
G H P+R++L L P +++ APT I+V + + K Y + + ++
Sbjct: 221 GKH-PIRVILDTHLRTPSSSHVITDGLAPTWIIVGKDVNKEKIASYEFENIAIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +D+++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEVQDILDLLGEKQILSLFVEGGQTVHASFLQTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFATLQDALSLEIQEMKQIGDDIKI 364
>gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440]
gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Salinispora tropica CNB-440]
Length = 353
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 189/379 (49%), Gaps = 49/379 (12%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA D+A + G TSP+P GC++ G+V GEG+ G AE+ A+ G RG
Sbjct: 10 MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVALAHAGERARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S ALVQAG+ RVV+ + +P Q G A LR+ G++V
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPNQAASGGAA-TLRAAGVRV--- 125
Query: 168 GEDLQSKIIE-EARKSCLLVNAPLIHRATSRV-PFSVFKYAMTLDVILPGVLSWMLTGKI 225
DL + E EA L + T R P+ ++KYA TLD G+
Sbjct: 126 --DLGVRAAEAEAGNIAWLTS-------TRRGWPYLLWKYAATLD------------GRS 164
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--GGG---HTPMR 280
AA+ G + WI+S+ +R V LRG DAV+ G TV D+PRLT R+ G P+R
Sbjct: 165 AAADGTSMWITSEAARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLR 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEY 340
+V+ P A + D APT + T + + V+ L +
Sbjct: 225 VVVDSAGQTPAGARVRD-DAAPTWIAT--------ADEVGTDSAGRVDLPAL-----LAA 270
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
H RG + L E G LA + +++GL+ K+ +VAP+++G PT +++ G+ ++ A+
Sbjct: 271 LHQRGVRAALLEGGPRLAGAFLAAGLVDKIVGYVAPRLLGA--GPTALADAGVTTITDAI 328
Query: 401 DLIDICYEQVGPDMLISGF 419
D I QVGPD+ I+
Sbjct: 329 DCEVIDVTQVGPDLRITAL 347
>gi|372267546|ref|ZP_09503594.1| riboflavin biosynthesis protein RibD [Alteromonas sp. S89]
Length = 377
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 182/385 (47%), Gaps = 43/385 (11%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGAT 110
RA +A++ T P+P GC+IA + G + GEG+ G AE++A+ G RG T
Sbjct: 11 RAVQLAERGLYTTMPNPRVGCVIADANGNIVGEGWHKRAGEPHAEIEALRDAGEQARGKT 70
Query: 111 AYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGE 169
AY+ +EP G AL+ AG+ +VV G+ +P + G ++ LR G++V
Sbjct: 71 AYVTLEPCSHTGKTGPCADALIAAGVAKVVFGMEDPNPSVSGNGLQKLRDAGIEV----- 125
Query: 170 DLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASS 229
+ ++EE SC +N I R T +P K AM++D G+ A +S
Sbjct: 126 --EGPLLEE---SCRALNPGFIKRMTLGLPLVRSKSAMSID------------GRTAMAS 168
Query: 230 GHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------------HGGGHT 277
G + W++ +R V LR RS AVV G +TVR DNP + R
Sbjct: 169 GESKWVTGPAARADVQALRARSCAVVTGVDTVRYDNPNMNVRPDEMALPAELAAAAAEKQ 228
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-----L 332
P+R+++ L P +A + DAPT+VVT A + + L G EV+ +
Sbjct: 229 PLRVIVDSQLRTPAKAFILQ-GDAPTLVVTTDAAAPERRARLEKAGAEVLALPADKEGRV 287
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ +++ R +L E G TL+ + I G + +V +VAPKI+G ++ P+ EL
Sbjct: 288 HLGQLLQELARRECNEVLIESGATLSGAFIYQGHVDEVIVYVAPKILG--SSARPLFELP 345
Query: 393 MVEMSQALDLIDICYEQVGPDMLIS 417
+ M L + VG D I+
Sbjct: 346 IERMGSMLPITITDMRAVGHDWRIT 370
>gi|348026994|ref|YP_004766799.1| riboflavin biosynthesis protein RibD [Megasphaera elsdenii DSM
20460]
gi|341823048|emb|CCC73972.1| riboflavin biosynthesis protein RibD [Megasphaera elsdenii DSM
20460]
Length = 378
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 187/387 (48%), Gaps = 34/387 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E A Y+++A D+A + G+T+ +P GC+I G++ G GY + GT AEV A+ G
Sbjct: 2 EPAEYMKKALDLAKTALGYTTSNPAVGCVIVKD-GEIVGTGYHHKAGTPHAEVWALREAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G + LV+ G+ +VV+ + +P + G+ LR G+
Sbjct: 61 ERAKGATVYVTLEPCAHYGRTPPCARTLVEKGVGKVVMAMLDPNPLVAGKGAAILRQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V L SK E A+ +N I + PF K A +LD
Sbjct: 121 PVEV---GLLSK--EAAQ-----LNEVFIKNMMVQKPFIAIKLAQSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT 277
G+ A+ +G + WI++ +R LR D ++VG NTV DNP LT+R H
Sbjct: 159 GRTASRTGKSQWITNDWARSYGHYLRSIYDGILVGINTVLTDNPLLTSRIERPGQDAPHQ 218
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-- 335
P+R+VL P + + T++VT + K L + GV V+ + + +
Sbjct: 219 PVRVVLDTKGRTPLNSLVVTDKTTQTLIVTTSLCPVEKMKALKNAGVRVILAPLQDGKTI 278
Query: 336 ---DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
D ++ HD G SIL E G T+ S + L+ K++AFV K+IGG A V G
Sbjct: 279 YLPDALQLLHDEGLTSILVEGGSTVQGSFFDARLVDKIYAFVGDKVIGGTGALPSVGGCG 338
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGF 419
+ E+ + + L+ E ++LI+ +
Sbjct: 339 VDELDECMPLLYDSVELHENNILITAY 365
>gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 379
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 181/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+++ G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEETCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ + RVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ S APT ++ R ++ S + + + +
Sbjct: 221 GQNPIRVILDTNLRTPPSSHVITDSLAPTWIMVGRDVNKEKIASYESENITIFQMKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G
Sbjct: 281 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 341 FSTLQDALSLEIQEMKQIGDDIKI 364
>gi|385800110|ref|YP_005836514.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Halanaerobium praevalens DSM 2228]
gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Halanaerobium praevalens DSM 2228]
Length = 379
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 192/389 (49%), Gaps = 40/389 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A + G TSP+P G +I G++ GEGY G + AEV A+ G
Sbjct: 8 DQKYMDRALKLAALAVGKTSPNPLVGAVI-VKNGEIIGEGYHQKYGAQHAEVNALAKAGF 66
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA ++N+EP G A++ +G+ RVVV + +P + G+ ++ LR G++
Sbjct: 67 KAEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKAGIK 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + +A+K +N + TS +PF K A TLD G
Sbjct: 127 VEI------GLLAAKAKK----LNEIFLKYITSELPFVYLKKAQTLD------------G 164
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PMRI 281
IA SS + WI+++ +R LR + DA++VG T+ D+P LT R T P+RI
Sbjct: 165 YIATSSSDSKWITNEQARKEGHKLRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRI 224
Query: 282 VLTQTLNLPEEANLWD-VSDAPTIVVTQR--------GARRKFQKYLASRGVEVVEFDI- 331
+L L +P +A + + S+A T+++T +K +K L GV+++ F +
Sbjct: 225 ILDPLLEIPIDAQIIEQKSEAETLIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVD 284
Query: 332 ----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
+ + +++Y H + SIL E G L+ S ++ LI K + F+APKI GG +
Sbjct: 285 ANNYFDLKKILKYLHQQKIASILVEGGAKLSHSFLAQKLIDKFYYFIAPKIYGGNDGCAS 344
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLI 416
S G M+ ++L I + ++L+
Sbjct: 345 FSGSGPKLMADTVNLEIIEQRNLADNILL 373
>gi|443290451|ref|ZP_21029545.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Micromonospora lupini str. Lupac 08]
gi|385886006|emb|CCH17619.1| Riboflavin biosynthesis protein ribD (Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Micromonospora lupini str. Lupac 08]
Length = 353
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 190/382 (49%), Gaps = 55/382 (14%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC++ + G+V GEG+ G AE+ A+ G G
Sbjct: 10 MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGPRAEG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH-- 165
TA + +EP D G S ALVQAG+ RVV+ + +P G A LRS G+QV
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPNPVASGGAA-TLRSAGVQVDLG 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V G++ ++ N + P+ ++KYA T+D G+
Sbjct: 129 VRGDEAEAG------------NVAWLTSMRRGWPYVIWKYAATVD------------GRS 164
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--GGG---HTPMR 280
AA+ G + WI+S+ +R V LRG DAVV G TV D+PRLTAR+ G P+R
Sbjct: 165 AAADGTSMWITSEAARIDVHALRGTVDAVVAGVGTVLADDPRLTARNLRDGSLAIRQPLR 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV---EVVEFDILNSRDV 337
+V+ + P +A + D GA R + A G V+ L
Sbjct: 225 VVVDSSGRTPLDAQVRD------------GAARTWIATAAEVGAGPDGRVDLPAL----- 267
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ H RG ++L E G LA + +++GL+ K+ +VAP+++G PT + + G+ ++
Sbjct: 268 LAALHQRGIRAVLLEGGPRLAGAFLAAGLVDKIVGYVAPRLLGA--GPTALVDAGVTTIA 325
Query: 398 QALDLIDICYEQVGPDMLISGF 419
+A+DL + QVGPD+ I+
Sbjct: 326 EAIDLEFVDVTQVGPDLRITAL 347
>gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
Length = 379
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 186/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKE-GNIVGIGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPL--VSGTGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV-------ATGVLE---TEATLLNRFFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R++L L P +++ APT ++ + ++ S + + +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASYESENIAIFQMKTKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +D++ + ++ LS+ E G T+ AS + + ++++ +++PK+IGGK+APT
Sbjct: 280 IEIKDLLFFLGEKQILSLFVEGGQTVHASFLQTKHLNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +QVG D+ I
Sbjct: 340 GFAALHDALSLEIQEMKQVGDDIKI 364
>gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
200]
gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
200]
Length = 379
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 189/387 (48%), Gaps = 33/387 (8%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
F + + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV
Sbjct: 4 FGEVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEV 62
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQA 153
A++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G
Sbjct: 63 HALQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNG 120
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
R L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 121 KRRLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD--- 167
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-- 271
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R
Sbjct: 168 ---------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIP 218
Query: 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI 331
+GG H P+R+VL L P +++ APT ++ + +++ S+ + + + +
Sbjct: 219 NGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMET 277
Query: 332 --LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 278 KHIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFG 337
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 338 GNGFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|367468317|ref|ZP_09468196.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Patulibacter
sp. I11]
gi|365816624|gb|EHN11643.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Patulibacter
sp. I11]
Length = 374
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 187/388 (48%), Gaps = 29/388 (7%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA- 101
A D A + R ++A++ SP+P G ++ T G+ GEG+ G AEV A+ A
Sbjct: 5 ARDEALLGRTVELAERGRRHVSPNPLVGAVV-TRDGQTLGEGWHAKAGGPHAEVAAIAAC 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
GG+ GAT ++++EP CH T A++ AG+ RVVV +P G+ + LR
Sbjct: 64 GGADLTGATIHVSLEPC-CHTGRTPPCTEAILAAGLRRVVVASDDPSAKASGRGLGILRD 122
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+G+QV V +A ++ L N P A + +P+ + K A +LD
Sbjct: 123 EGVQVDVAAPG------SDAGRAARLQNQPFRKHARTGIPWVMLKTASSLD--------- 167
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTP 278
G++A +G + WIS SRD R DAVVVG T D+P+LTAR P
Sbjct: 168 ---GRLATHAGDSRWISGGPSRDLAHGWRAEVDAVVVGIGTALADDPQLTARVPDVPRQP 224
Query: 279 MRIVLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS--- 334
R+V LP + L V++AP V+ R A R L + GVEV+ N
Sbjct: 225 TRVVFDSEARLPLDGKLVASVAEAPVTVIASRAASRSATDALRASGVEVIVVSGQNEHGR 284
Query: 335 -RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
R +E R S++ E G LA + +G I ++ FVAP ++GG+ AP + G+
Sbjct: 285 VRAGLEELGQREVTSLMLEGGSHLAGAFFDAGEIDELRMFVAPILLGGRQAPGILGGEGV 344
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
++ A ++I E +G D+L L+
Sbjct: 345 ERIADAARPVEITREPIGDDLLTIARLK 372
>gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
Length = 401
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 187/379 (49%), Gaps = 37/379 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R A A K G TSP+P G ++ G+V G+ G AEV A+ A G+ R
Sbjct: 34 FMRAAVREATKGLGRTSPNPAVGAVLVKG-GRVVARGHHARAGGPHAEVVALRAAGARAR 92
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y +EP D G S A+++AG+ RV VG +P + G+ V LR G++V
Sbjct: 93 GADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEV-- 150
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ R++C +NA T R P K A+TLD G+IA
Sbjct: 151 --------VTGVLRETCDELNAHWFTFITERRPHVTLKAAVTLD------------GRIA 190
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
+G A W++ + +R V LR R DAV+VG T R D+PRLT R G G P+R+VL
Sbjct: 191 TRTGDARWVTGEPARRWVHRLRDRVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLD 250
Query: 285 QTLNLPEEANLW-DVSDAPTIVVTQRGARR----KFQKYLASRGVEVVEFDILNSRDVME 339
L+LP + NL+ S APT+V R + + RG V+ RD++
Sbjct: 251 TDLSLPRDLNLFRQRSAAPTLVAHASARARDLGPRIELLRCRRGPGGVDL-----RDLLA 305
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
RG +L E G + A + GL+ +V FVAPKI GG P V+ G M+ A
Sbjct: 306 RLAARGVTHLLVEGGARVHARFLQEGLVDRVAIFVAPKIAGGDGIPL-VAGRGPARMADA 364
Query: 400 LDLIDICYEQVGPDMLISG 418
L L D+ E+VG D+L++G
Sbjct: 365 LSLADVRVERVGDDVLVTG 383
>gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 380
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 193/391 (49%), Gaps = 39/391 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA D+A K G T+P+P G ++ + VA +GY G AE A+E G
Sbjct: 7 KDRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVA-QGYHGRLGGPHAEAVALEKAG 65
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G T Y+ +EP CH T +++AG+ RVV+ +P + + G+ V+ LR G
Sbjct: 66 REASGTTMYVTLEPC-CHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAG 124
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V + +++ E + ++ +P+ + K+ M+LD
Sbjct: 125 IKVEVGLKKAEAEKQNEIFRKYIVTG----------LPYMIGKWGMSLD----------- 163
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPM 279
GKIA +G + WI+S+ +R LR R A++VG TV+ D+P LT RH G P+
Sbjct: 164 -GKIATHTGDSRWITSEKARFDTHRLRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPV 222
Query: 280 RIVLTQTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDIL------ 332
RIV+ L L ++ + + +S+ PTI+ T + K ++ ++ +E + ++L
Sbjct: 223 RIVVDSHLRLSLQSKVLEKISETPTIIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTS 282
Query: 333 ----NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
+ ++++ RG S+L E G TL S I + K ++ +IGG N+PTPV
Sbjct: 283 TGKVDIFELVKLLGQRGLDSVLVEGGETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPV 342
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLISGF 419
G + ++ L ++ YE G + I +
Sbjct: 343 GGKGFQALKDSVMLNNMEYEYFGDSIRIEAY 373
>gi|423358849|ref|ZP_17336352.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD022]
gi|401084721|gb|EJP92967.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD022]
Length = 370
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 187/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGH 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Bacillus pumilus SAFR-032]
gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Bacillus pumilus SAFR-032]
Length = 361
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 186/385 (48%), Gaps = 33/385 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ A A G TSP+P G +I G++ G G G AE+ A++
Sbjct: 3 DDVFYMELAIANAKAMKGQTSPNPLVGAVI-VQQGEIVGMGAHMKAGEPHAEIHALQMAR 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GA Y+ +EP +G A++++G+ RVV+ ++P + G+ + L+ G+
Sbjct: 62 EKAKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + +EA + +N P H S P+ + K A++LD
Sbjct: 122 EVD------EGICKQEADR----LNVPFFHFIQSDFPYVILKSAISLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ +R V LR +DAV+ G T+ +D+ L + P+R++
Sbjct: 160 GKIATADLESKWITGTEARKEVQQLRQEADAVITGVETIIQDDAGLIVKDSNMTQPIRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV------EFDILNSRD 336
L TL +P A A TI+ R +K + L +G +V DI D
Sbjct: 220 LDSTLRIPLHAKCLTDRRAETIICISRMYDQKKYELLIEKGHQVYITSGEERTDI---HD 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ +R +S+L E GG+++AS + + L+++ ++AP +IGGKNAPT G+ ++
Sbjct: 277 VLRMLKERSVMSVLVEAGGSVSASFLEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKL 336
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
+A+ D+ Y VG D ++ +Q
Sbjct: 337 KEAIRPADVEYSMVGKDFKMTLKIQ 361
>gi|344998474|ref|YP_004801328.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SirexAA-E]
gi|344314100|gb|AEN08788.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SirexAA-E]
Length = 366
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RRA +A + G TSP+P GC++ + G+ AGEG+ G AE+ A+ G
Sbjct: 6 DITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALREAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
RG TAY+ +EP C +HT AL+ AGI RVV + +P G A LR+
Sbjct: 66 RARGGTAYVTLEP--C--NHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATGGA-DTLRA 120
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
+G+QV Q + +EA N + P+ ++KYA TLD
Sbjct: 121 EGVQVE------QGLLADEAETG----NTAWLTSVRLGRPYVLWKYAATLD--------- 161
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTP 278
G++AA+ + WI+S SR V LR +DAVVVG T R D+P+L R G P
Sbjct: 162 ---GRVAAADATSRWITSAESRADVHRLRAEADAVVVGSGTARADDPQLGVRGIDGAVQP 218
Query: 279 MRIVL-TQTLNLPEEANLWDVSDAPTIV-VTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
+R+V+ T + A + D S APT+V V + K R + L+
Sbjct: 219 LRVVVDTGATAVKPGARVLDGS-APTLVAVAEDADASHLPKDAVLRLPRAADGRGLDVPA 277
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
++ H RG S+L E G LA S +++G + V ++AP ++G P +++ G+ +
Sbjct: 278 LLAALHARGVRSVLLEGGPVLAGSFVAAGTVDTVVGYLAPVLLGA--GPAALADAGITTL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQPIP 424
SQAL L ++GPD+ ++ P+P
Sbjct: 336 SQALRLAVTETVRIGPDLRVTAV--PVP 361
>gi|423417975|ref|ZP_17395064.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-1]
gi|401106248|gb|EJQ14209.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-1]
Length = 370
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 187/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATIYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEETG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATITGESQWITGEEARADVHHYRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ APT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|407787152|ref|ZP_11134294.1| riboflavin biosynthesis protein RibD [Celeribacter baekdonensis
B30]
gi|407199978|gb|EKE69990.1| riboflavin biosynthesis protein RibD [Celeribacter baekdonensis
B30]
Length = 366
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 182/378 (48%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +R A +A + G T P+P GC+I + +V G G+ G AE A+ G
Sbjct: 3 DVGPMRHALSLAARGLGRTWPNPAVGCVIMRES-RVVGRGWTQPGGRPHAETMALAQAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP HG + AL+ AGITRVVV + +P + G+ L+S G++
Sbjct: 62 AARGATAYVTLEPCSHHGKTPPCAEALIAAGITRVVVALGDPDPRVNGRGFALLQSAGIK 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
+ + +++ +E S +++ P++ K A++ D G
Sbjct: 122 LTTGVCEAEARAAQEGFLSKVILGRPMV----------TLKLALSWD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
+IA ++G + WI+ +R RV +R DAV+VG T R D+P LT R G H P+R+V
Sbjct: 160 RIATATGESQWITGPLARRRVHAMRATHDAVLVGAGTARADDPSLTVRGLGVSHQPVRVV 219
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDV 337
+++ L+LP L + + P +V + + A G E++E + L+ +
Sbjct: 220 MSRRLDLPLSGQLARTAQEVPVWIVHGPDVSPELKSVWAGLGAELIEAPVVYGQLDPKAS 279
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+E RG + E GG LAAS + + L V F A IG + P + LG+ +
Sbjct: 280 LEALGARGLTRVFCEGGGALAASLMGAHLPDHVALFTAGLAIGAEGMPG-LGALGIDRLR 338
Query: 398 QALDLIDICYEQVGPDML 415
QA EQ+GPD L
Sbjct: 339 QAPRYALQRVEQIGPDAL 356
>gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
Length = 379
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 189/387 (48%), Gaps = 33/387 (8%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
F + + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV
Sbjct: 4 FGEVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEV 62
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQA 153
A++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G
Sbjct: 63 HALQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPL--VSGNG 120
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
R L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 121 KRRLEEARIEV-------TTGVLE---ADAVLLNRYFFHYMKTKRPFVTIKTAMSLD--- 167
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-- 271
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R
Sbjct: 168 ---------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIP 218
Query: 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI 331
+GG H P+R++L L P +++ APT ++ + +++ S+ + + + +
Sbjct: 219 NGGKH-PIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMET 277
Query: 332 --LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 278 KYIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFG 337
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 338 GNGFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
Length = 379
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 182/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGEKAKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++ EA +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV--------TTVVLEAE--AVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ APT ++ + + S + + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENITIFQIKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG NAPT G
Sbjct: 281 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKHFNEIVTYISPKLIGGSNAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 341 FSTLQDALSLEIQEMKQIGDDIKI 364
>gi|389577257|ref|ZP_10167285.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
gi|389312742|gb|EIM57675.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
Length = 373
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/389 (30%), Positives = 184/389 (47%), Gaps = 47/389 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y+RRA ++A + G+ P+P G +I GK+ GEGY G AE A ++
Sbjct: 3 EEEYMRRAIELARQGEGWCHPNPMVGAVIVRD-GKIIGEGYHRKCGELHAERNAFQSLRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH T A++ I +VV+G R+P + G+ LR G+
Sbjct: 62 SAEGAVLYVTLEPC-CHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ED R+ C +N H T R P+ KYAMT D
Sbjct: 121 EVV---EDF-------LREECDALNDVFFHYITKRRPYVKLKYAMTAD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ + +R+ V +R ++VG TVR+D+P L R GG P+RI+
Sbjct: 159 GKIATRTGASKWITGEEAREEVQRMRHACMGIMVGSGTVRKDDPMLNCRLPGGRDPVRII 218
Query: 283 LTQTLNLPEEANLWDVSDA--PTIVVTQRGARRKFQ---KYLASRGVEV----------V 327
L++ E + + ++ IV R F+ + L G EV V
Sbjct: 219 CDSKLSIGENSQIMRSAEQQRTIIVAACRDVDAGFESRREILEKAGAEVWNLPKQAGEGV 278
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
+ ++L ME + S+L E GG LA SA+ +G++ +V F APKI GG+ +P
Sbjct: 279 DLNLL-----MEKLGEIEIDSVLLEGGGILADSALRAGIVSEVDVFTAPKIFGGR-GKSP 332
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLI 416
V G+ S+A+ L + GPD+ +
Sbjct: 333 VEGEGVDLPSEAVMLTPKEVKMFGPDLFV 361
>gi|423598573|ref|ZP_17574573.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD078]
gi|401236843|gb|EJR43300.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD078]
Length = 370
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 39/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRILEEAG 119
Query: 162 LQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
++V VLG + L+N H ++ PF K AM+LD
Sbjct: 120 IKVTTGVLGAE------------ATLLNRYFFHYMKTKRPFVTIKTAMSLD--------- 158
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H
Sbjct: 159 ---GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH- 214
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNS 334
P+R++L L P +++ PT I+V + ++ K Y S + V + +
Sbjct: 215 PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVSKEKIASY-ESNNIAVFQMKTQQIEI 273
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G
Sbjct: 274 QDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFS 333
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
++ AL L +Q+G D+ I L+
Sbjct: 334 KLQDALSLTIQEMKQIGNDIKIVATLK 360
>gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
Length = 379
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 35/391 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 123 KLEEVGIEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H P+R++L L P +++ PT I+V + + K Y S + V +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIAPY-ESNNIAVFQMKTQ 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT
Sbjct: 279 QIEIQDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G ++ AL L +Q+G D+ I L+
Sbjct: 339 AGFSKLQDALSLTIQEMKQIGNDIKIVATLK 369
>gi|423661043|ref|ZP_17636212.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM022]
gi|401301084|gb|EJS06673.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM022]
Length = 370
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 39/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRILEEAG 119
Query: 162 LQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
++V VLG + L+N H ++ PF K AM+LD
Sbjct: 120 IKVTTGVLGAE------------ATLLNRYFFHYMKTKRPFVTIKTAMSLD--------- 158
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H
Sbjct: 159 ---GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH- 214
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNS 334
P+R++L L P +++ PT I+V + ++ K Y S + V + +
Sbjct: 215 PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVSKEKIASY-ESNNIAVFQMKTQQIEI 273
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G
Sbjct: 274 QDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFS 333
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
++ AL L +Q+G D+ I L+
Sbjct: 334 KLQDALSLTIQEMKQIGNDIKIVATLK 360
>gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 366
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 196/386 (50%), Gaps = 39/386 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE---AGGS 104
Y+ A D+A + G+T P+P G +I GK+ G+G+ Y G AE +A++ + G
Sbjct: 7 YMNIALDLAKERKGYTHPNPTVGAVIVKD-GKIIGKGFHYKAGMPHAEREAIKDAKSKGF 65
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG+T ++++EP CH T A+++ GI++VVV +P + G+ V L+ +G+
Sbjct: 66 DLRGSTIFVSLEPC-CHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGV 124
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V VLG ++E K +N T + PF K A T+D
Sbjct: 125 EV-VLG------VLE---KQAQKINEDFFIYITQKRPFVHIKVAQTID------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GKIA +G + WI+S+ SR LR ++ AV+VG NT + DNP LT R+ P+R+
Sbjct: 163 GKIATKTGSSKWITSQESRKYAHILRNQATAVLVGSNTAQLDNPSLTVRYIQTERQPIRV 222
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR--GVEVVEFDILNS----R 335
+L L +P N++ +A TIV+T + A ++K + S+ V++ D N +
Sbjct: 223 LLDSKLKVPLNYNIYS-KEADTIVITSKEA-DPYKKEILSKQSNVKLYTLDTYNGKFKIK 280
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
D++E + + +L E G + S I K+ F APKI+ G++ + LG+ +
Sbjct: 281 DILEILYQNQIVHLLVEGGKEVITSFIKEDFWDKISLFTAPKIV-GEDGISSFGSLGVND 339
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+++++ L +++ G D + Q
Sbjct: 340 INESIKLKVEDFKRFGDDFYFECYKQ 365
>gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
Length = 373
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 181/383 (47%), Gaps = 31/383 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+
Sbjct: 1 MKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
G +GAT Y+ +EP G L++ + RVV+ NPL + G +
Sbjct: 60 HMAGDKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKKR 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 118 LEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGG 275
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R GG
Sbjct: 162 ------GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGG 215
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LN 333
P+R++L L P +++ APT ++ + + S + + + +
Sbjct: 216 QNPIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENIAIFQMKTKQIE 275
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G
Sbjct: 276 IQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGF 335
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
+ AL L +QVG D+ I
Sbjct: 336 STLQDALSLEIQEMKQVGDDIKI 358
>gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
Length = 366
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 185/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V ++E CL + T VP+ KYAMT+D
Sbjct: 121 QVTV-------GVLEN---ECLNLIKSFRKYITQHVPYVFMKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + H+ WI+ + +R V LR + A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNHSKWITGEEARKHVHQLRHQVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + +D T + T + K + Y + G E++ + ++ D+
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-KNHGCEILSIKKKGNHIDLSDL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S+L E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLLLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGDDYLI 355
>gi|376268011|ref|YP_005120723.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus F837/76]
gi|364513811|gb|AEW57210.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus F837/76]
Length = 370
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 180/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHAFHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ GITRVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNEGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ S APT I+V + K Y S + + + + +DV
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGTDVNKEKIASY-ESENITIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 277 LHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLEIQEMKQIGDDIKI 355
>gi|338535979|ref|YP_004669313.1| riboflavin biosynthesis protein RibD [Myxococcus fulvus HW-1]
gi|337262075|gb|AEI68235.1| riboflavin biosynthesis protein RibD [Myxococcus fulvus HW-1]
Length = 379
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 198/390 (50%), Gaps = 34/390 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F RA ++R A + A K G TSP+P G ++ G++ GY GT AEV A+
Sbjct: 15 FDRAVAEFFMRIALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGYHKKAGTAHAEVVAL 73
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA G+ +GA Y +EP D +G S A+++AG+ RV+ +P + G+ V +R
Sbjct: 74 EAAGARAKGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPQVSGKGVARMR 133
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
GL+V L + EEA + +N P + +P+ K A+TLD
Sbjct: 134 RAGLKV------LTGVLAEEADR----LNRPFFKMMRTGLPWVTLKAAVTLD-------- 175
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH 276
GK+A ++G + W++ +R V LR D ++VG NTVR+D+P+LT R GGG
Sbjct: 176 ----GKLATATGDSRWVTGAPARAWVHRLRDSVDVILVGSNTVRKDDPKLTTRLPGGGGK 231
Query: 277 TPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGAR-RKFQKYLASRGVEVVEF----D 330
P+R+V+ L L P S A T+V T RK +++LA +GV+V +
Sbjct: 232 DPLRVVVDSHLRLSPGYTVFTQRSPARTVVATLEDPEGRKARRFLA-QGVDVWQLRQKSG 290
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++ + ++ G+ ++ E G + S + L + F+APK+IG + +
Sbjct: 291 QVDLKALLRRLAREGHNHVMVEGGAEMYGSLLRGHLADALALFLAPKLIGSPGL-SWAGD 349
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFL 420
LG+ EM+QAL + D+ +E+ G D+L+ L
Sbjct: 350 LGVKEMAQALAVKDLTFERHGDDLLLQALL 379
>gi|423615551|ref|ZP_17591385.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD115]
gi|401260088|gb|EJR66261.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD115]
Length = 370
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 184/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G + L G
Sbjct: 62 KAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGHGKKKLEDAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ + APT ++ + ++ S+ + + + + +DV
Sbjct: 217 RVILDTHLRTPPSSHVITDALAPTWIIVGKDVNKEKLASYESKNIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ ++ LS+ E G T+ AS + + +++ +++PK IGGK+APT G ++
Sbjct: 277 LDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKFIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
gi|156863153|gb|EDO56584.1| riboflavin biosynthesis protein RibD [Clostridium sp. L2-50]
Length = 336
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 33/351 (9%)
Query: 78 GKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGIT 136
G++ GEGY G AE A GA Y+ +EP +G V+A+++ I+
Sbjct: 6 GRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAIIEHKIS 65
Query: 137 RVVVGIRNPLQHLRGQAVRALRSQGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRA 194
RV VG +P + G+ + LR G++V HVL E+ C +N H
Sbjct: 66 RVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEE------------CDSLNPVFFHYI 113
Query: 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAV 254
++ P+ V KYAMT+D GKIA SG + WI+ + +R V + R +
Sbjct: 114 VNKTPYVVMKYAMTMD------------GKIATYSGKSKWITGEEARAHVMEQRNALTGI 161
Query: 255 VVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLW-DVSDAPTIVVT-QRGAR 312
+VG TV +D+P LT R GG P+RI+ L +P ++ + S+ PTI+ T Q +
Sbjct: 162 MVGSETVIKDDPALTCRRAGGRNPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQ 221
Query: 313 RKFQKYLASRGVEVVEFDILNS----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIH 368
++ L GVE++E + ++ +++M R IL E GGTL SA+ +G++
Sbjct: 222 TDKKQKLIGAGVEIIETENVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVK 281
Query: 369 KVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
+V ++APKI GG TPV +G+ +A ++ G D+++ F
Sbjct: 282 EVDVYIAPKIFGGSAGYTPVGGMGVESPEEAYPFELGSVQRFGADIMLQYF 332
>gi|423457701|ref|ZP_17434498.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5X2-1]
gi|401148085|gb|EJQ55578.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5X2-1]
Length = 370
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 182/378 (48%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKE-GNIVGIGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPL--VSGTGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------ATGVLE---TEATLLNRFFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT ++ + ++ S + + + + +D++
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ LS+ E G T+ AS + + ++++ +++PK+IGGK+APT G +
Sbjct: 278 FFLGEKQILSLFVEGGQTVHASFLQTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALHD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 338 ALSLEIQEMKQVGDDIKI 355
>gi|337287728|ref|YP_004627200.1| riboflavin biosynthesis protein RibD [Thermodesulfobacterium sp.
OPB45]
gi|334901466|gb|AEH22272.1| riboflavin biosynthesis protein RibD [Thermodesulfobacterium
geofontis OPF15]
Length = 380
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 190/382 (49%), Gaps = 30/382 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFG-CLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
D +++ A K G+TSP+P G LI K+ +GY G AEV+A+
Sbjct: 10 DEFFMKIAVKEGYKGLGWTSPNPPVGAVLIDPLNKKIIAKGYHKKFGYPHAEVEAINRAK 69
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+G+ Y+ +EP +G +++AGI++VV GIR+P +G + L+S+G+
Sbjct: 70 EKAKGSILYVTLEPCSHYGKTPPCTEKIIEAGISKVVCGIRDPNPIAKG-GLEYLKSKGI 128
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + + KI+ S +L + P+ + K A +LD
Sbjct: 129 EVKVGVLEREVKILTRFFLSHIL----------RKRPWVIMKVASSLD------------ 166
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
G+IA S+G + WI+ + +R LR DA++VG NT+ +DNP LT R G P+RIV
Sbjct: 167 GRIAVSTGESKWITGEKARKYAHKLRHICDAILVGKNTILKDNPDLTCRLVKGKNPIRIV 226
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEV----VEFDILNSRDV 337
L L+L +++V+ + TI+V A + +K L +RG+EV +E + ++ +
Sbjct: 227 LDTYLSLDPNFKIFEVNKNKKTIIVCGEKADLQKEKILKARGIEVWRLPLEREKIDLNAL 286
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+E ++ SIL E GG + S + L+ ++F + P IIG + + + +
Sbjct: 287 LEKCNENNICSILVEGGGKVHGSFLEKNLVDEIFYIIGPVIIGDREGILAIEREPIKSLK 346
Query: 398 QALDLIDICYEQVGPDMLISGF 419
+AL L ++ +++G L F
Sbjct: 347 EALFLKNLKVKKMGDSFLFHCF 368
>gi|423406462|ref|ZP_17383611.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-3]
gi|401659752|gb|EJS77235.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-3]
Length = 370
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKATSGQTSPNPMVGAVVVND-GNIVGMGAHLHAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 NAKNATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++EE L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLEE---EATLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATKTGESKWITGEEARADVHQYRHTHDAILVGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT ++ + ++ S + + + + +DV
Sbjct: 217 RVILDTHLRTPPSSHVMTDGLAPTWIIVGKDVNKEKIASYESENIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + S +++ +++PK+IGGK+APT G ++
Sbjct: 277 LYLLGEKQILSLFVEGGQTVHASFLQSNNFNEIVTYISPKLIGGKDAPTLFGGHGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
Length = 379
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 186/391 (47%), Gaps = 35/391 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V D ++ L+N H ++ PF K AM+LD
Sbjct: 123 RLEEVGIEVTTGVLDAEAT----------LLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H P+R++L L P +++ PT I+V + + K Y S + V +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQ 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT
Sbjct: 279 QIEIQDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G ++ AL L +Q+G D+ I L+
Sbjct: 339 AGFSKLQDALSLTIQEMKQIGNDIKIVATLK 369
>gi|423489291|ref|ZP_17465973.1| riboflavin biosynthesis protein RibD [Bacillus cereus BtB2-4]
gi|423495015|ref|ZP_17471659.1| riboflavin biosynthesis protein RibD [Bacillus cereus CER057]
gi|423498193|ref|ZP_17474810.1| riboflavin biosynthesis protein RibD [Bacillus cereus CER074]
gi|401151108|gb|EJQ58560.1| riboflavin biosynthesis protein RibD [Bacillus cereus CER057]
gi|401160242|gb|EJQ67620.1| riboflavin biosynthesis protein RibD [Bacillus cereus CER074]
gi|402432539|gb|EJV64598.1| riboflavin biosynthesis protein RibD [Bacillus cereus BtB2-4]
Length = 370
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 39/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRILEEAG 119
Query: 162 LQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
++V VLG + L+N H ++ PF K AM+LD
Sbjct: 120 IKVATGVLGAE------------ATLLNRYFFHYMKTKRPFVTIKTAMSLD--------- 158
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHT 277
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H
Sbjct: 159 ---GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH- 214
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNS 334
P+R++L L P +++ PT I+V + ++ K Y S + V + +
Sbjct: 215 PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVSKEKIASY-ESNNIAVFQMKTQQIEI 273
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G
Sbjct: 274 QDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFS 333
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
++ AL L +Q+G D+ I L+
Sbjct: 334 KLQDALSLTIQEMKQIGNDIKIVATLK 360
>gi|358068450|ref|ZP_09154912.1| riboflavin biosynthesis protein RibD [Johnsonella ignava ATCC
51276]
gi|356693267|gb|EHI54946.1| riboflavin biosynthesis protein RibD [Johnsonella ignava ATCC
51276]
Length = 367
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 185/378 (48%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A ++A K AG SP+P G +I + K+ G+GY G+ AE+ A++ +
Sbjct: 3 DLEYMKLAVELARKGAGKVSPNPMVGAVIVKN-DKIIGKGYHKKFGSSHAEINALKDCVA 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP CH T A++++GI+RVV+G + + G+ L+ G+
Sbjct: 62 STKDATIYVTLEPC-CHYGKTPPCTEAIIKSGISRVVIGTLDVNPVVAGKGSYQLQQHGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV + ++E K + I + PF + KYAMT+D
Sbjct: 121 QVDI-------GVLEHECKHLIRFFKKFI---IDKKPFVLMKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GK A +G + WIS + SR++V LR A++VG TV +D+P L R G P+RI+
Sbjct: 159 GKTATYTGASKWISCEKSREKVHQLRSEFSAIMVGITTVLKDDPMLNCRIENGRNPIRII 218
Query: 283 LTQTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKY--LASRGVEV-VEFDILNSRDVM 338
TL LP + + + + T + T + K Y L + + V + D +N +M
Sbjct: 219 CDTTLKLPLTSQIVKTAHSIETYIATAQTDDEKLIPYKELGCKFITVDKKGDFINLNQLM 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
S+L E GG L SA++ ++ ++ FV+PK+ GG + TPV+ G+
Sbjct: 279 TKLGKLQIDSVLLEGGGMLNWSALNERIVQEIAVFVSPKVFGG-SPHTPVTGQGISIPDN 337
Query: 399 ALDLIDICYEQVGPDMLI 416
A+ L + VG D LI
Sbjct: 338 AIKLQPCSFSSVGSDFLI 355
>gi|430744529|ref|YP_007203658.1| riboflavin biosynthesis protein RibD [Singulisphaera acidiphila DSM
18658]
gi|430016249|gb|AGA27963.1| riboflavin biosynthesis protein RibD [Singulisphaera acidiphila DSM
18658]
Length = 371
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 186/386 (48%), Gaps = 32/386 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D +++RA A++ G P+P G ++ G++ G G+ G AEV+A+ G
Sbjct: 5 DDLFWMQRALAEAERGRGAVEPNPMVGSVV-VRDGQLVGFGHHTRFGGPHAEVEALSRAG 63
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ +GAT Y+ +EP CH T A++ AG+TRVV +R+P + G + LR+ G
Sbjct: 64 TAAQGATLYVTLEPC-CHFGKTPPCTEAILTAGVTRVVAAMRDPFPKVAGGGLAQLRAAG 122
Query: 162 LQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ + V L D +++ NAP + R + P+ K+AMTLD
Sbjct: 123 VAIEVGLESDAAARL-----------NAPYLKRLATGRPYVTAKWAMTLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GK A +SG + WIS SR V ++RGR DA+ VG T D+P LTAR G TP R
Sbjct: 162 --GKTATASGDSRWISGSRSRALVHEVRGRMDAIAVGIGTALADDPELTARPPGPRTPSR 219
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
+VL LP + L + + P +V A + ++ LA+ G E++ F ++
Sbjct: 220 VVLDSAGRLPTTSRLARTAREIPVLVALTDRAAPERREALAALGCELIPFSGDGPVPILP 279
Query: 340 YFHD---RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ RG ++L E GG L + + +G + V F+A + GG A TP G M
Sbjct: 280 LLDELGRRGMTNLLVEGGGRLLGAFLDAGQVDAVDVFIASLVEGGPPAFTPAQGNGRPRM 339
Query: 397 SQALDLIDICYEQVGPDMLISGFLQP 422
+ AL + + D+ + G P
Sbjct: 340 ADALRVERQQVSLIDGDVRLQGVFPP 365
>gi|374856316|dbj|BAL59170.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[uncultured candidate division OP1 bacterium]
Length = 376
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 190/391 (48%), Gaps = 37/391 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R ED ++RRA ++A++ AG+TSP+P G ++ V+ G+ G AE A++
Sbjct: 3 RPED--FMRRALELAERGAGWTSPNPMVGAVVVKHNIIVSA-GWHEEFGGPHAEFSALQR 59
Query: 102 GGSFCRGATAYLNMEP---GDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G+ RGA Y+N+EP + +++AGI RV V +R+P + G+ + LR
Sbjct: 60 AGALARGADLYVNLEPCVAAPGKRNPPCADEIIRAGIKRVFVALRDPDPRINGKGIDTLR 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V ++ + EARK +N + T+ +PF K AMT D
Sbjct: 120 RAGIEV------IEGLLEREARK----LNEIYLKFKTTGLPFMTLKMAMTAD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----G 274
GKIA +G + WISS+ S + +LR R A++VG TV DNP+LT R
Sbjct: 162 ----GKIATHTGDSQWISSQRSLEFAHELRHRHRAILVGIGTVLADNPQLTVRRTVQARP 217
Query: 275 GHTPMRIVLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
P+RIVL +P +A + + TIV T ++ L V V +
Sbjct: 218 ARNPIRIVLDSRGRIPLDATVVRSAQEVRTIVATTDAMPPDKEQALRDAHVAVWRLPQRD 277
Query: 334 SR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
R +++ S+L E G +A S + + LI K+ +APKIIGG+ AP P+
Sbjct: 278 GRVDLCALIQKLAHEQIDSVLIEGGSDVAWSFVRARLIDKILLVIAPKIIGGRAAPGPIG 337
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G +S+A+ L +I ++ D+L +L
Sbjct: 338 GPGCERLSEAIPLREITVSRLDDDILYEAYL 368
>gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
Length = 370
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEETR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + ++V +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEVVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 374
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 192/393 (48%), Gaps = 41/393 (10%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
K +A+ A++RRA +A + G TSP+P GC++ + VA EGY G AE A
Sbjct: 7 KAEKAQAEAFMRRALALARQGMGHTSPNPMVGCVVVQNGVVVA-EGYHERVGGYHAERNA 65
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRA 156
+ A Y+ +EP CH T +++ GI RV VG + + G+ V+
Sbjct: 66 LTHCEKDLSDADLYVTLEPC-CHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKI 124
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L + G++V + I+E C +N H T R PF V KYAMTLD
Sbjct: 125 LEAAGIEV-------VTGILE---TKCRKLNEVFYHYMTMRTPFVVSKYAMTLD------ 168
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276
GKIA +SG A W+S + SR +V +R + ++VG TV D+P L R G
Sbjct: 169 ------GKIACASGDAKWVSGEASRAQVQRMRKQYSGIMVGIGTVMADDPMLNCRIEAGV 222
Query: 277 TPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKY-LASRGVEV-------- 326
P+RIV L++P + + + D P IV A + L + GV V
Sbjct: 223 DPVRIVCDSNLHIPLASRIVQTAGDIPVIVACTETAAASAKATALQAAGVTVLPAGDGTR 282
Query: 327 VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
V+ +IL M R S+L E G TL A+A +G+++KV AF+APK++GG AP
Sbjct: 283 VDLNIL-----MRLLGRREIDSVLLEGGATLNAAAFEAGVVNKVVAFIAPKLVGGAAAPP 337
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
PV G+ M+ A+ L + + G D+ +SG+
Sbjct: 338 PVGGAGIPCMADAIVLTSVETGRCGDDLWVSGY 370
>gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
Length = 379
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + +++ S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQNALSLKIQEMKQIGDDIKI 364
>gi|429123694|ref|ZP_19184226.1| riboflavin biosynthesis protein RibD [Brachyspira hampsonii 30446]
gi|426280263|gb|EKV57278.1| riboflavin biosynthesis protein RibD [Brachyspira hampsonii 30446]
Length = 369
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 187/384 (48%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+R A + A K GFTSP+P G +I KV G GY G AE+ A + G
Sbjct: 9 YMRMAIEEAKKGEGFTSPNPLVGAVIVKDD-KVIGIGYHQKYGENHAEINAFLDAQKKGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G A+++ I +V++G + + G ++ L+ G++
Sbjct: 68 DVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGIE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++EE C+ +N + ++ PF V KYAMT+D G
Sbjct: 128 VIV-------NVLEE---ECIKLNEVFFYYIANKRPFVVMKYAMTID------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 166 KIATVSGKSKWITSEKAREHSHRFRNKYSAIMVGINTVIEDNPTLNCRLPNTRNPIRIIL 225
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYF 341
+L + ++N+ + + T + T K K L S G+E+++ + N R D+ E
Sbjct: 226 DSSLKIDLDSNICKTAKEIKTFIATISNDDSKI-KELESLGIEIIKTESDNGRVDLKELM 284
Query: 342 ----HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ S+ E G +L AS I L++KV ++APKI GG A +P+ G+ + +
Sbjct: 285 KILGEEKNIDSVYVEGGASLHASLIEERLVNKVLVYIAPKIFGGVKAKSPIGGEGIDDPN 344
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A LI ++ D+ + +L
Sbjct: 345 NAFKLIGGDITKIDEDLFLEYYLN 368
>gi|423604256|ref|ZP_17580149.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD102]
gi|401244876|gb|EJR51234.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD102]
Length = 370
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 180/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G + L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKKRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+S+ +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITSEDARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT ++ + + S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGGKNAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 338 ALSLEIQEMKQVGDDIKI 355
>gi|423574204|ref|ZP_17550323.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-D12]
gi|401211729|gb|EJR18475.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-D12]
Length = 370
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 179/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT ++ + K S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPKKIASYESENIAIFQIKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGG NAPT G +
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 338 ALSLEIQEMKQIGDDIKI 355
>gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
Length = 379
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 189/387 (48%), Gaps = 33/387 (8%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
F + + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV
Sbjct: 4 FGEVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGIGAHLRAGEEHAEV 62
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQA 153
A++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G
Sbjct: 63 HALQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPL--VSGNG 120
Query: 154 VRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
R L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 121 KRRLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD--- 167
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-- 271
GK A +G + WI+ + +R V R DA+++G NTV DNP LT R
Sbjct: 168 ---------GKTATVTGESKWITGEQARADVHQYRHTHDAILIGVNTVIADNPHLTTRIP 218
Query: 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI 331
+GG H P+R++L L P +++ APT ++ + +++ S+ + + + +
Sbjct: 219 NGGKH-PIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMET 277
Query: 332 --LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 278 KYIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFG 337
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 338 GNGFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
Length = 373
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 187/384 (48%), Gaps = 33/384 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+
Sbjct: 1 MKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
+ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 60 QMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRR 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 118 LEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG
Sbjct: 162 ------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGG 215
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
H P+R+VL L P +++ APT ++ + +++ S+ + + + + +
Sbjct: 216 KH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHI 274
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G
Sbjct: 275 EIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNG 334
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
++ AL L +Q+G D+ I
Sbjct: 335 FSKLQDALSLKIQEMKQIGDDIKI 358
>gi|403380823|ref|ZP_10922880.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JC66]
Length = 366
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 185/388 (47%), Gaps = 35/388 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
++ + Y+R A ++A + G T +P GC+I G++ G G G+ AEV A+
Sbjct: 1 MNKLTEETYMRLALELAKGAQGQTGVNPMVGCVIVRD-GRIVGTGAHLRMGSAHAEVHAI 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG-ITRVVVGIRNPLQHLRGQAVRALR 158
G G+T Y+ +EP HG L+ A + +VVV +P + G + LR
Sbjct: 60 RMAGDEAEGSTVYVTLEPCSHHGRTPPCCELLIASRVAKVVVAATDPNPQVAGSGISRLR 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V V + +EAR+ + N ++ + +PF K A TLD
Sbjct: 120 EAGIEVAV------GLLEQEARELNEVFNKYIV----TGLPFVTLKTASTLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHT 277
GKIA+ SG + WI+++ SR+ V LR R A++VG TV DNP LT R
Sbjct: 162 ----GKIASKSGDSRWITNEASREFVHTLRHRHQAIMVGVGTVLADNPSLTTRLPVPALD 217
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV------EFDI 331
P+R+++ L P +A + I+ T+ A + + L G EV+ E D+
Sbjct: 218 PLRVIIDSRLRTPPDARVLHKPGRALIITTEEAAVERRMR-LEQNGAEVIAAGAGPEVDL 276
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ M+ +R SIL E GG + + + GLI K + F APKIIGG+ AP+
Sbjct: 277 TLA---MKLLGERQISSILLEGGGRINGAMLELGLIDKCYLFYAPKIIGGEGAPSNFQFP 333
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGF 419
G +M+ A+ L I E ++ + G+
Sbjct: 334 GQEKMADAVSLRKITVEMFDDNICLVGY 361
>gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
gi|423426247|ref|ZP_17403278.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-2]
gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
gi|401110994|gb|EJQ18893.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3X2-2]
Length = 370
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
Length = 370
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 180/378 (47%), Gaps = 31/378 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
++L L P +++ APT ++ + + S + + + + +DV+
Sbjct: 218 VILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ LS+ E G T+ AS + + +++ +++PK+IGG NAPT G ++
Sbjct: 278 HLLGEKQILSLFVEGGQTVHASFLQTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSKLQD 337
Query: 399 ALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 338 ALSLKIQEMKQIGDDIKI 355
>gi|423401040|ref|ZP_17378213.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-2]
gi|401654030|gb|EJS71573.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-2]
Length = 370
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGIGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPL--VSGTGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + +IE L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVIE---TEATLLNRFFFHYMRTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT + + ++ S + + + + +D+
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIFVGKDVNKEKIASYESENIAIFQMKTKHIEIKDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G T+ AS + + ++++ +++PK+IGGK+APT G +
Sbjct: 277 LFFLGEKQILSLFVEGGQTVHASFLQTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +QVG D+ I
Sbjct: 337 DALSLEIQEMKQVGDDIKI 355
>gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
4222]
gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
4222]
Length = 379
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMASQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GKIA +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + +++ S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5]
gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5]
Length = 353
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 51/380 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC++ + G+V GEG+ G AE+ A+ G+ RG
Sbjct: 10 MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S AL+ AG++RVV+ + +P G A LR+ G+QV L
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASGGAA-TLRAAGVQV-AL 127
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G Q EA L + + R P+ ++KYA TLD G+ AA
Sbjct: 128 GVRAQEA---EAGNVAWLTS---MRRGW---PYVIWKYAATLD------------GRSAA 166
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-----PMRIV 282
+ G + WI+S+ +R V LRG DAV+ G TV D+PRLTAR+ T P+R+V
Sbjct: 167 ADGTSMWITSEAARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVV 226
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV---EVVEFDILNSRDVME 339
+ + P +A + D GA R + A G V+ L +
Sbjct: 227 VDSSGRTPADARVRD------------GAARTWIATAAEVGAGPDGRVDLPAL-----LA 269
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
H RG + L E G TLA + +++GL+ ++ +VAPK++G PT + + G+ ++ A
Sbjct: 270 ELHHRGVRAALLEGGPTLAGAFLAAGLVDRIVGYVAPKLLGA--GPTALLDAGVSTIADA 327
Query: 400 LDLIDICYEQVGPDMLISGF 419
+DL +VGPD+ I+
Sbjct: 328 IDLEITDVTRVGPDLRITAL 347
>gi|407769105|ref|ZP_11116482.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288025|gb|EKF13504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 373
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 182/382 (47%), Gaps = 31/382 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++R A ++ + G P+P+ GC++ +S G + G G+ G AE A++ G
Sbjct: 9 DDRHFMRVALSLSKRGLGNVWPNPSVGCVLVSSEGAIVGRGFTKPGGRPHAERVALDEAG 68
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
R +TAY+ +EP G + L++AG+ RVV + +P + + G+ + LR G+
Sbjct: 69 DKARNSTAYVTLEPCSHFGKSPPCALGLIEAGVKRVVSALEDPDRRVSGKGYKMLRDAGI 128
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V +EA + +NA + R S P K A T+D
Sbjct: 129 TVET------GLYGDEAHR----INAGFLSRIVSGRPIITLKLASTID------------ 166
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMR 280
+ A SG + WI+ +R+ LR DA++VG TV DNP LT R G +P+R
Sbjct: 167 ARSATRSGESQWITEDIAREYGHLLRANHDAILVGAKTVIVDNPTLTCRIPGREAQSPVR 226
Query: 281 IVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
+VL + ++P A L+ PT ++T + + + GV+V+ E D +
Sbjct: 227 VVLDRNGDVPVSAELFRGAQKVPTWIITSQDKFDEVFEKFGKTGVKVLTAGCENDHFDLN 286
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
DVM++ ++G +L E GG LAA + LI +V F+AP +IG + ++ELG+
Sbjct: 287 DVMKHLGEQGLTRVLVESGGNLAADLVHRDLIDRVVHFIAPSLIGAEGKAM-IAELGLDH 345
Query: 396 MSQALDLIDICYEQVGPDMLIS 417
+S VG D+ I+
Sbjct: 346 LSDMPRFQRTSVRPVGKDIAIT 367
>gi|423395586|ref|ZP_17372787.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-1]
gi|401653328|gb|EJS70872.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG2X1-1]
Length = 370
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKATSGQTSPNPMVGAVVVND-GNIVGMGAHLHAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 NAKNATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E+ L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLED---EATLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A ++G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATTTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT ++ + ++ S + + + + +DV
Sbjct: 217 RVILDTHLRTPPSSHVMTDGLAPTWIIVGKDVNKEKIASYESENIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + S +++ +++PK+IGGK+APT G ++
Sbjct: 277 LYLLGEKQILSLFVEGGQTVHASFLQSNNFNEIVTYISPKLIGGKDAPTLFGGHGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 379
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 181/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGEKAKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ APT ++ + + S + + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENIAIFQIKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG NAPT G
Sbjct: 281 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKHFNEIVTYISPKLIGGSNAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 341 FSTLQDALSLKIQEMKQIGDDIKI 364
>gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
Length = 379
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 181/384 (47%), Gaps = 31/384 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LHMAGEKAKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
G P+R++L L P +++ APT ++ + + S + + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNPEKIASYESENIAIFQIKTKQI 280
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG NAPT G
Sbjct: 281 KIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKHFNEIVTYISPKLIGGSNAPTLFGGNG 340
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 341 FSTLQDALSLKIQEMKQIGDDIKI 364
>gi|254412559|ref|ZP_05026333.1| conserved hypothetical protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180869|gb|EDX75859.1| conserved hypothetical protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 159
Score = 154 bits (390), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/151 (50%), Positives = 95/151 (62%), Gaps = 11/151 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK +PYG FSNFSPHPIQ ++G W +VEHYYQAHKF G D A + IK
Sbjct: 3 IYFYKVEEPYGCFSNFSPHPIQ---IDG-WCWQTVEHYYQAHKFVGTTDEA---LIRTIK 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
+P EAA LGR R H R DWE VK IM+R + KF +P + +LL+TG V
Sbjct: 56 NVSTPMEAALLGRDRTRNH----RPDWEQVKQQIMWRGVLTKFLTHPDIQQILLNTGEDV 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLR 601
+VE SP D +WG G + G N+LG++LM +R
Sbjct: 112 IVEDSPTDYYWGCGEDQTGENHLGKMLMNVR 142
>gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 379
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 187/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + + + S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKEEKISSYESKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQNALSLKIQEMKQIGDDIKI 364
>gi|365159104|ref|ZP_09355288.1| riboflavin biosynthesis protein RibD [Bacillus sp. 7_6_55CFAA_CT2]
gi|363625620|gb|EHL76641.1| riboflavin biosynthesis protein RibD [Bacillus sp. 7_6_55CFAA_CT2]
Length = 370
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
Length = 353
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 51/380 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC++ + G+V GEG+ G AE+ A+ G+ RG
Sbjct: 10 MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S AL+ AG++RVV+ + +P G A LR+ G+QV L
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASGGAA-TLRAAGVQV-AL 127
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
G Q EA L + + R P+ ++KYA TLD G+ AA
Sbjct: 128 GVRAQEA---EAGNVAWLTS---MRRGW---PYVIWKYAATLD------------GRSAA 166
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-----PMRIV 282
+ G + WI+S+ +R V LRG DAV+ G TV D+PRLTAR+ T P+R+V
Sbjct: 167 ADGTSMWITSEAARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVV 226
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV---EVVEFDILNSRDVME 339
+ + P +A + D GA R + A G V+ L +
Sbjct: 227 VDSSGRTPADARVRD------------GAARTWIATAAEVGAGPDGRVDLPAL-----LA 269
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
H RG + L E G TLA + +++GL+ ++ +VAPK++G PT + + G+ ++ A
Sbjct: 270 ELHHRGVRAALLEGGPTLAGAFLAAGLVDRIVGYVAPKLLGA--GPTALLDAGVSTIADA 327
Query: 400 LDLIDICYEQVGPDMLISGF 419
+DL +VGPD+ I+
Sbjct: 328 IDLEITDVTRVGPDLRITAL 347
>gi|423612327|ref|ZP_17588188.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD107]
gi|401246378|gb|EJR52726.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD107]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 186/384 (48%), Gaps = 33/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLCAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L + G
Sbjct: 62 RAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEASG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHRYRHMHDAILVGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT ++ + ++ S + V + + +DV
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGKDVNKEQIASYESNNIAVFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++P++IGGK+APT G ++
Sbjct: 277 LSLLGEKQILSLFVEGGQTVHASFLKTTSFNEIVTYISPRLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G ++ I L+
Sbjct: 337 DALPLTIQEMKQIGNNIKIVATLK 360
>gi|423561413|ref|ZP_17537689.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-A1]
gi|401201670|gb|EJR08535.1| riboflavin biosynthesis protein RibD [Bacillus cereus MSX-A1]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIIGKDVKKEKISSYNSKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
KBAB4]
gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
KBAB4]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 186/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATITGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ PT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|334136630|ref|ZP_08510090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF7]
gi|333605829|gb|EGL17183.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF7]
Length = 379
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 30/385 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D +Y+R A +A + G T +P GC++ G++ G G +G AEV A++ G
Sbjct: 6 QDESYMRLALQMAQAALGQTGINPVVGCVV-VKDGRIVGMGAHLKRGEGHAEVHALKMAG 64
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP +G S L+++GI RVVV +P + G + LRS+G+
Sbjct: 65 REAEGATAYVTLEPCSHYGKTPPCSDRLIESGIRRVVVAAVDPNPLVAGSGIARLRSRGI 124
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
D+++ ++ + + +N +R+PF K A TLD
Sbjct: 125 -------DVEAGLLADEANA---LNEAFGKFIVTRLPFVTMKSASTLD------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRI 281
GKIAA +G + WI+ +R+ V +R R A++VG TV D+P LT R P+RI
Sbjct: 163 GKIAAKTGDSKWITGAPARELVHAMRHRHAAIMVGIGTVLADDPELTTRLSVPALHPLRI 222
Query: 282 VLTQTLNLPEEANLWDVSDA-PTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV--- 337
V+ L P A + D PT+++T A ++ L + G EV+ D+
Sbjct: 223 VVDSQLRTPLSARVLRQQDERPTLILTTADADPAKREALEALGAEVLACGSGPHVDLPLA 282
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKII-GGKNAPTPVSELGMVEM 396
M +R S+L E GG L+ + + + L+ K F APK I GG AP + G M
Sbjct: 283 MRLLGEREVPSVLLEGGGRLSGAMLENRLVDKAVLFFAPKWIGGGPEAPDNAAFAGFGRM 342
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
S+A+ L + E VG D+ ++G+ Q
Sbjct: 343 SEAIRLARMTVETVGEDVCLTGYPQ 367
>gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
Length = 379
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 187/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 TLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + + + S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKEEKISSYESKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQNALFLKIQEMKQIGDDIKI 364
>gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Protochlamydia amoebophila UWE25]
gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Protochlamydia amoebophila UWE25]
Length = 368
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 34/351 (9%)
Query: 65 PHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDH 124
P+P GC+I K+ G+GY Y G AE+ A+++ +GA+ Y+ +EP HG
Sbjct: 27 PNPWVGCVIVKDQ-KIIGKGYTYPSGQAHAEINALKSASENAKGASLYVTLEPCSHHGKT 85
Query: 125 T-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV-LGEDLQSKIIEEARKS 182
A+++AGI V V +++P +RGQ ++ LR G+ V V +GE K
Sbjct: 86 PPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKLREAGIHVKVGIGE-----------KE 134
Query: 183 CLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRD 242
+V P +++ S++P++V K A ++D G+ AA G + W++S +R
Sbjct: 135 AKVVLTPYLYQRESQIPYTVLKIATSVD------------GRTAAVDGTSQWLTSSEARL 182
Query: 243 RVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH---TPMRIVLTQTLNLPEEANLWDVS 299
R S AVV+G T D+P+LT RH H P RI++ + P L+D
Sbjct: 183 DAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLFDQK 242
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-----LNSRDVMEYFHDRGYLSILWECG 354
APT+V+T + + Q G EV+ +N R+ + RG + +L E G
Sbjct: 243 LAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRGIIQVLVEGG 302
Query: 355 GTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
TL ++ + GL++ + + P +IG P E+ ++ ++ L + +I
Sbjct: 303 STLQSALLEIGLVNCLSVYTGPLLIGKSGLPLFSKEIPTLKKAKLLKIQNI 353
>gi|423591890|ref|ZP_17567921.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD048]
gi|401232023|gb|EJR38525.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD048]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V D ++ L+N H ++ PF K AM+LD
Sbjct: 120 IEVTTGVLDAEAT----------LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ PT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Candidatus Nitrospira defluvii]
gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Candidatus Nitrospira defluvii]
Length = 373
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 186/387 (48%), Gaps = 36/387 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
+ D Y+ A +A K G TSP+P G L+ T G++ G+G G AEV A+
Sbjct: 3 SRDREYMTLALRLAAKGRGSTSPNPMVGALVVTR-GRIVGQGSHRKAGGPHAEVIALSQA 61
Query: 103 GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
GS +G T Y+ +EP T V ++ +G+ RVVV + +P ++G V L
Sbjct: 62 GSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTRA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V + ++ + +A +H + PF++ K MTLD
Sbjct: 122 GIRVDVGCCEAEATQLNQA----------YLHWVKTGRPFTILKAGMTLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------HGG 274
G+IA +SG + WI+ + SR + LR DA++VG TV RDNP+LTAR
Sbjct: 162 --GQIATASGESQWITDEVSRQQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTT 219
Query: 275 GHTPMRIVLTQTLNLPEEANLWD-VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
G P+RIV+ L +P +A + + A T++ T A + + L RG++V+
Sbjct: 220 GRQPLRIVVDSRLRIPLKAKVLEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAG 279
Query: 334 SRDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ R G ++L E G L A+ + +GL ++ +VAP ++GG++A
Sbjct: 280 GHVNLPVLWARLGQLGVTTVLVEGGSDLNAAVLQAGLPQRLMCYVAPLLLGGQDAKGLFG 339
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLI 416
+ A+ L ++ E VG DMLI
Sbjct: 340 GRSPRRLRSAVPLKNVRIEPVGRDMLI 366
>gi|423385615|ref|ZP_17362871.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1X1-2]
gi|423528028|ref|ZP_17504473.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB1-1]
gi|401635671|gb|EJS53426.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1X1-2]
gi|402451691|gb|EJV83510.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB1-1]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
gi|402564477|ref|YP_006607201.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
HD-771]
gi|434377219|ref|YP_006611863.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
HD-789]
gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
gi|401793129|gb|AFQ19168.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
HD-771]
gi|401875776|gb|AFQ27943.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
HD-789]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMASQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GKIA +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
gi|423585405|ref|ZP_17561492.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD045]
gi|423630835|ref|ZP_17606582.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD154]
gi|423640805|ref|ZP_17616423.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD166]
gi|423649977|ref|ZP_17625547.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD169]
gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
gi|401234048|gb|EJR40534.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD045]
gi|401264202|gb|EJR70314.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD154]
gi|401279866|gb|EJR85788.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD166]
gi|401283257|gb|EJR89154.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD169]
Length = 370
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 185/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + + + S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 NALSLKIQEMKQIGDDIKI 355
>gi|410641971|ref|ZP_11352489.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
chathamensis S18K6]
gi|410138288|dbj|GAC10676.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
chathamensis S18K6]
Length = 372
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 196/403 (48%), Gaps = 51/403 (12%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
+FS A DA + A +A+K TSP+PN GC+I G + G+G+ GT AE+
Sbjct: 1 MTQFS-ALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDPKGNIVGQGWHQKAGTPHAEI 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVR 155
A+ G +GATAY+ +EP + HG S AL++AG++RVV + +P + G ++
Sbjct: 60 HAIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+ V S ++E K+ +N I R + +P+ K A +LD
Sbjct: 120 KLSDAGVAV-------SSGLLEREAKA---LNLGFIKRMKTGIPWVTVKLASSLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-- 273
GK A ++G + WI+ +R+ V R +S A++ G TV DNP L R+
Sbjct: 165 -------GKTALNNGESQWITGPLAREDVQRHRAKSCAILSGSGTVLADNPSLNVRYSEL 217
Query: 274 ----------GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYL 319
P+RI+L + + +L+ +S +P +++ + F ++Y
Sbjct: 218 GNVKSELSEENLRQPVRILLDGRNQMRPDLHLFSLS-SPIVIINSQPNTADFPAHVEQYQ 276
Query: 320 A-SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
A S G + L+ +DVM++ RG+ I E G LA + + + LI ++ + APK+
Sbjct: 277 ALSNGAQ------LDLQDVMKHLGQRGFNQIWVEAGAKLAGALLQNKLIDELILYQAPKL 330
Query: 379 IGGKNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+G K V EL +M QA +L QVGPD+ ++ L
Sbjct: 331 LGDKGRDLFAVDEL--TQMQQAFELQWQDVRQVGPDLKLTARL 371
>gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 373
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 187/384 (48%), Gaps = 33/384 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+
Sbjct: 1 MKKMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
+ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 60 QMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRR 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L ++V + ++E +L+N H ++ PF K A++LD
Sbjct: 118 LEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTALSLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG
Sbjct: 162 ------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGG 215
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
H P+R+VL L P +++ APT ++ + +++ S+ + + + + +
Sbjct: 216 KH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHI 274
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G
Sbjct: 275 EIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNG 334
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
++ AL L +Q+G D+ I
Sbjct: 335 FSKLQDALSLKIQEMKQIGDDIKI 358
>gi|386738004|ref|YP_006211185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus anthracis str. H9401]
gi|384387856|gb|AFH85517.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus anthracis str. H9401]
Length = 373
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 181/384 (47%), Gaps = 33/384 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+
Sbjct: 1 MKKMTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
G +GAT Y+ +EP G L++ + RVV+ NPL + G R
Sbjct: 60 HMAGDKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRK 117
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 118 LEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGG 275
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG
Sbjct: 162 ------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGG 215
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--L 332
P+R++L L P +++ S APT I+V + K Y S+ + + + +
Sbjct: 216 QNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQI 274
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G
Sbjct: 275 EIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNG 334
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ AL L +Q+G D+ I
Sbjct: 335 FSTLQDALSLEIQEMKQIGDDIKI 358
>gi|383454626|ref|YP_005368615.1| riboflavin biosynthesis protein RibD [Corallococcus coralloides DSM
2259]
gi|380734137|gb|AFE10139.1| riboflavin biosynthesis protein RibD [Corallococcus coralloides DSM
2259]
Length = 387
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 193/391 (49%), Gaps = 36/391 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F A ++R A + A K G TSP+P G ++ G++ G+ GT AEV A+
Sbjct: 23 FDHAVAEFFMRIALEEAAKGLGRTSPNPVVGAVLVKG-GRIIARGHHKKAGTAHAEVVAL 81
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
EA GS RGA Y +EP D +G S A+++AG+ RV +P + G+ + L+
Sbjct: 82 EAAGSKARGADLYTTLEPCDHYGRTPPCSLAVLEAGVRRVFSASSDPNPLVSGKGLNRLK 141
Query: 159 SQGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
G+ V HVL ++ + +N P + +P+ K A+TLD
Sbjct: 142 RGGVAVVTHVLKDEADA------------LNRPFFKMMRTGLPWVTLKAAVTLD------ 183
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGG 274
GKIAA SG + W++ + SR V LR + DA++VG NTVR D+P+LT R GG
Sbjct: 184 ------GKIAAPSGDSRWVTGEASRAWVHRLRDQVDAILVGANTVRMDDPQLTTRLPGGG 237
Query: 275 GHTPMRIVLTQTLNL-PEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV----VEF 329
G P+R+V+ L L P S A T++ T + + ++GVEV +
Sbjct: 238 GKDPVRVVVDSHLKLSPGHTVFTQRSPARTVIATLEDPEGRRARRFLAQGVEVWNVRAKQ 297
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
D ++ + V++ G +L E G L + + L + F+APK++G T
Sbjct: 298 DRVDLKAVLKRVKKEGLNHVLVEGGAGLYGTLLREHLADALALFLAPKLVGA-GGLTWAG 356
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
ELG+ +M+ AL + D+ E+VG D+L+ L
Sbjct: 357 ELGVKDMAHALAVKDLTMEKVGDDVLLRALL 387
>gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
Length = 379
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALLLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + +++ S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQDALSLKIQEMKQIGDDIKI 364
>gi|340357622|ref|ZP_08680235.1| riboflavin biosynthesis protein RibD [Sporosarcina newyorkensis
2681]
gi|339617198|gb|EGQ21826.1| riboflavin biosynthesis protein RibD [Sporosarcina newyorkensis
2681]
Length = 362
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 184/374 (49%), Gaps = 29/374 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A +A G TSP+P G +I G++ G G G + AE A++ G+
Sbjct: 5 YMGMALKLARNVVGQTSPNPPVGAVIVKD-GRIVGMGAHLQAGERHAERVALDMAGTKAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP G + + A+++AGI RV V I +P + G+ + LR+ GL+V
Sbjct: 64 GADLYVTLEPCSHTGKTSPCADAIIRAGIQRVYVAISDPNPLVAGKGMERLRAAGLEVE- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ ++A+K + AP H ++ P K AMT+D GKIA
Sbjct: 123 -----KDVCTDQAQK----LYAPFFHFIRTKTPHVTMKTAMTID------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIVLT 284
S+G + W++S+ +R V LR DA++VG T+ D+P LT R GG H P+R++L
Sbjct: 162 TSTGDSKWVTSEQARLDVHLLRHTQDAILVGVQTILHDDPLLTTRLPRGGKH-PIRVILD 220
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYFH 342
L P ++ + + APT + A ++ L V ++ L+ +++
Sbjct: 221 TWLRTPIDSQVIQNNAAPTWIFCGNEAEYLREQLLQKPHVRIIRMPKIQLDIEEILLRLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
G +++L E G + AS I + + +V ++APK++GG + TPV M +A L
Sbjct: 281 SDGVMTLLVEGGAAVNASFIRARAVQRVICYMAPKLLGGSGSLTPVGGTDPEIMGEAFPL 340
Query: 403 IDICYEQVGPDMLI 416
I E +GPD+ I
Sbjct: 341 IFESVEMIGPDIKI 354
>gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 379
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 182/385 (47%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ + RVV+ NPL + G R
Sbjct: 65 LHMAGDKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGG 274
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G P+R++L L P +++ S APT I+V + K Y S+ + + +
Sbjct: 221 GQNPIRVILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ +DV+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT
Sbjct: 280 IEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFSTLQDALSLEIQEMKQIGDDIKI 364
>gi|423412084|ref|ZP_17389204.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3O-2]
gi|423432131|ref|ZP_17409135.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4O-1]
gi|401104152|gb|EJQ12129.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG3O-2]
gi|401116887|gb|EJQ24725.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4O-1]
Length = 370
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|410620475|ref|ZP_11331346.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
polaris LMG 21857]
gi|410159960|dbj|GAC35484.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
polaris LMG 21857]
Length = 372
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 191/397 (48%), Gaps = 50/397 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A DA + A +A+K TSP+PN GC+I S G + G+G+ GT AE+ A+
Sbjct: 6 AHDAKMMALAIRLAEKGQYTTSPNPNVGCVITDSQGHIIGQGWHKKAGTAHAEIHALAEA 65
Query: 103 GSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G GATAY+ +EP HG AL+ AGI RVV + +P + G ++ L + G
Sbjct: 66 GEQANGATAYVTLEPCSHHGRTGPCAQALLNAGIKRVVAAMVDPNPLVAGNGLKKLNAAG 125
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V S ++E K +N I R T+ P+ K A +LD
Sbjct: 126 VEV-------SSGLLENEAKR---LNRGFIKRMTTGQPWVTVKLASSLD----------- 164
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-------- 273
GK A +G + WI+ +R V R RS A++ G TV DNP LT RH
Sbjct: 165 -GKTALHNGLSQWITGPLARQDVQRHRARSCAILSGSGTVLADNPSLTVRHSELGFAMED 223
Query: 274 ----GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYLA-SRGV 324
P R++L + + +L+ +S +P +++ + +F ++Y A S+G
Sbjct: 224 IAIDELRQPSRVLLDGRNQMHPDLHLFSLS-SPIVLINSQLNSAEFPSHVEQYQAKSKGA 282
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
+ L+ +DVM++ RG+ S+ E G LA + + + LI ++ + APK++G K
Sbjct: 283 Q------LDLQDVMQHLGQRGFNSVWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGR 336
Query: 385 PT-PVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
V EL ++ + AL D+ VGPD+ ++ +
Sbjct: 337 DLFAVDELTQMQQAFALQWSDV--RHVGPDLKLTAYF 371
>gi|423503199|ref|ZP_17479791.1| riboflavin biosynthesis protein RibD [Bacillus cereus HD73]
gi|449091069|ref|YP_007423510.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|402459420|gb|EJV91157.1| riboflavin biosynthesis protein RibD [Bacillus cereus HD73]
gi|449024826|gb|AGE79989.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 370
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K A++LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTALSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|407781555|ref|ZP_11128773.1| riboflavin biosynthesis protein ribD [Oceanibaculum indicum P24]
gi|407207772|gb|EKE77703.1| riboflavin biosynthesis protein ribD [Oceanibaculum indicum P24]
Length = 370
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 177/389 (45%), Gaps = 32/389 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A +A++ G +P+P GC++ +S G++ G G+ G AE +A+ G
Sbjct: 3 DLVHMRAALSLAERGLGQVAPNPAVGCVLVSSDGQIVGRGWTQPGGRPHAETEALRRAGP 62
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP HG + ALV AGI R VV + + + G+ + LR G+
Sbjct: 63 LAKGATAYVTLEPCSHHGKTPPCADALVAAGIARAVVALEDSDPRVSGRGIARLRDAGIA 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V +EAR+ +N + P K A +LD G
Sbjct: 123 VDV------GLCADEARR----LNEGFFLKVEQGRPLVTVKLASSLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRI 281
IA SG + WI+ +R LR DA++VG NT D+P LT R G G +P+RI
Sbjct: 161 NIATHSGDSKWITGPEARRHAHLLRATHDAILVGSNTALSDDPELTCRLPGLAGRSPVRI 220
Query: 282 VLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVM 338
V L LP + L S PT + T+ G G+EV+E D N DV
Sbjct: 221 VADGRLRLPLTSRLVATASQVPTWLCTREGNDPSRLDAYRDLGLEVIELPGDGDNPLDVT 280
Query: 339 ---EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ RG +L E GG + A+ + LI ++ F A IGG P + LG+
Sbjct: 281 ALAQALGARGITRLLVEGGGAVIAALLQRDLIDRLVWFRAGLAIGGDGVPA-IGGLGLQR 339
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIP 424
++ A D + VG DM+ PIP
Sbjct: 340 VADAPDFVRTDAVPVGADMMECYARNPIP 368
>gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
NRRL 11379]
gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
Length = 366
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 188/387 (48%), Gaps = 36/387 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D +RRA +A + G TSP+P GC+I + G VAGEG+ G AEV A+ A
Sbjct: 4 AADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRAA 63
Query: 103 GSFCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
RG TAY+ +EP C +HT V AL+ AGI+RVV + +P G L
Sbjct: 64 DDRARGGTAYVTLEP--C--NHTGRTGPCVQALLAAGISRVVYAVGDPNPQATGGG-DTL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R+ G+QV + L ++ + L + + R P+ ++KYA TLD
Sbjct: 119 RAAGVQVE---QGLLAEEAGAGNAAWL--TSVRLGR-----PYVLWKYAATLD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+IAA+ + WI+S +R V LR +DAV+VG T R D+P+L R G T
Sbjct: 162 -----GRIAAADATSRWITSPEARADVHRLRAEADAVLVGSGTARTDDPQLGVRGIDGAT 216
Query: 278 -PMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+V+ T + A + D + I V + R L+
Sbjct: 217 QPLRVVVDTNAAAVKPGARVLDATAPTLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLD 276
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++E H RG S+L E G TLA + +++G + KV ++AP ++G P +++ G+
Sbjct: 277 ALLESLHTRGVRSVLLEGGPTLAGAFVAAGKVDKVVGYLAPVLLGA--GPAALADAGIST 334
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQP 422
+SQAL L +GPD+ ++ P
Sbjct: 335 ISQALRLDVTETVAIGPDLRVTAVPAP 361
>gi|423437565|ref|ZP_17414546.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X12-1]
gi|401120720|gb|EJQ28516.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X12-1]
Length = 370
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 185/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R D ++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDVILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLKIQEMKQIGDDIKI 355
>gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
Length = 379
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 188/386 (48%), Gaps = 35/386 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ R+V+ NPL + G +
Sbjct: 65 LHMAGEKAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIKV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H+ +R++L L P +++ + APT I+V + + K Y S+ + + +
Sbjct: 221 GKHS-IRVILDTHLRTPPSSHIITNTLAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTK 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT
Sbjct: 279 QIEIQDVLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ +L L +Q+G D+ I
Sbjct: 339 NGFSKLQDSLSLKIQEMKQIGDDIKI 364
>gi|384181933|ref|YP_005567695.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 370
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 184/384 (47%), Gaps = 33/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G +L++ + RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT + + ++ S + + + + +D+
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDI 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK+APT G +
Sbjct: 277 LDLLGEKQILSLFVEGGQTVHASFLQTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSTLQ 336
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I Q
Sbjct: 337 DALSLKIQEMKQIGDDIKIVAHAQ 360
>gi|417940098|ref|ZP_12583386.1| riboflavin biosynthesis protein RibD [Streptococcus oralis SK313]
gi|343388979|gb|EGV01564.1| riboflavin biosynthesis protein RibD [Streptococcus oralis SK313]
Length = 366
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 184/380 (48%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
QV V + E+ +I+ RK T VP+ KYAMT+D
Sbjct: 121 QVTVGVLENECLNLIKSFRK-----------YITQHVPYVFMKYAMTMD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI
Sbjct: 159 -GKIATKTNQSKWITGEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRI 217
Query: 282 VLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRD 336
+ L P + + +D T + T + K + Y + G E++ + ++
Sbjct: 218 ICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKIKLY-QNHGCEILSIKKKGNHIDLSS 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+M++ + S+L E G + SA+ ++ ++ ++APKI GG NA PV G+
Sbjct: 277 LMQHLGNMQIDSLLLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-NAKFPVGGEGISLP 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
+ A+ L + Q+G D LI
Sbjct: 336 NDAISLKPYAFSQIGDDYLI 355
>gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
Length = 383
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 178/392 (45%), Gaps = 42/392 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV-EAGG 103
D ++++A A G TSP P G +I +V G G AE+ A+ EAG
Sbjct: 3 DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDN-RVIGRGATSPPYGPHAEIHALNEAGA 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ GA Y +EP C HT A++ AGI RV++G +P + G+ V LR G
Sbjct: 62 TAASGADLYTTLEPC-CIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V V G I + S L+ P T P+ K+AMTLD
Sbjct: 121 INV-VTG-------IAQQETSALI--RPFATYITQGRPYVTAKWAMTLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----- 276
GK+A +G A WIS +R V LR R DA+++G T DNP LT R
Sbjct: 160 -GKLATHTGDAHWISGPAARTWVHQLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKR 218
Query: 277 ----TPMRIVLTQTLNLPEEANLWDVSDAP-TIVVTQRGARRKFQKYLASRGVEVVEFDI 331
P+RIVL+ L +L AP T V+ + + ++ L RGV+V+E
Sbjct: 219 TPRQDPLRIVLSSYGKLGSHLHLLQEQLAPGTCVMVSETSSLQQREDLRQRGVQVIEVPA 278
Query: 332 LNSRDV-----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
+ V + +G + +L E G L +A LI V AF+APK+IGG +P+
Sbjct: 279 NKTGQVDLVAALNILAQKGIMHLLLEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPS 338
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
P+ G+ M AL L + + + D+LI G
Sbjct: 339 PIGGSGLAVMQHALRLQGVSIQTIDEDLLIEG 370
>gi|451346486|ref|YP_007445117.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens IT-45]
gi|449850244|gb|AGF27236.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens IT-45]
Length = 371
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 182/379 (48%), Gaps = 27/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G
Sbjct: 2 DEYYMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAINMAGR 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++
Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIK 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V L + EE +N +H + +P+ K A +LD G
Sbjct: 121 VKT---GLLRQQAEE-------LNKMFLHFMRTGLPYITLKAAASLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A +G + WI+S+ +R R +++VG TV+ DNP LT R P+R++
Sbjct: 159 KTATETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVI 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L L +PE AN+ APT + T +GA + Q L + G++V +E D ++ +V+
Sbjct: 219 LDTKLTIPETANVLTDGAAPTWIFTAKGADVQKQDRLTALGIKVFPLETDRIHIPEVLSI 278
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M
Sbjct: 279 LAENGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVP 338
Query: 401 DLIDICYEQVGPDMLISGF 419
L Q+GPD+ ++
Sbjct: 339 HLQFTQITQIGPDIKLTAI 357
>gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Sterne]
gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0488]
gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0442]
gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0193]
gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0465]
gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0389]
gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0174]
gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Tsiankovskii-I]
gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
684]
gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0248]
gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
CNEVA-9066]
gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A1055]
gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Western North America USA6153]
gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Kruger B]
gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Vollum]
gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Australia 94]
gi|421506376|ref|ZP_15953299.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. UR-1]
gi|421638196|ref|ZP_16078792.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. BF1]
gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Sterne]
gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0488]
gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0193]
gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0442]
gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0389]
gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0465]
gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0174]
gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Tsiankovskii-I]
gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
684]
gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0248]
gi|401823369|gb|EJT22516.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. UR-1]
gi|403394622|gb|EJY91862.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. BF1]
Length = 370
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ S APT I+V + K Y S+ + + + + +DV
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 277 LHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALSLEIQEMKQIGDDIKI 355
>gi|145348536|ref|XP_001418703.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578933|gb|ABO96996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 169
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 104/159 (65%), Gaps = 8/159 (5%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
+ FYK WD YGA SNFSP P+ V+G V W +VEHYYQA KF GV++ A++ EKIK
Sbjct: 7 VKFYKAWDEYGALSNFSPFPVS---VDG-VEWPTVEHYYQAQKFAGVHNDIARESFEKIK 62
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLS---TG 567
A+SPE AA++GRS Q HP+ VR DW+ VK+D+M RAL K Y ++L+ T
Sbjct: 63 LAESPEAAAKIGRSAQAAHPESVRKDWDDVKVDVMRRALTEKLVRYEGPRTLLMESVCTD 122
Query: 568 GSV-LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFL 605
G V ++E SP D WG GR+G G N LG LL+ +R + +
Sbjct: 123 GRVRVIEDSPVDGVWGAGRDGTGQNLLGALLVNIREDLV 161
>gi|423478256|ref|ZP_17454971.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6X1-1]
gi|402428418|gb|EJV60515.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6X1-1]
Length = 370
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGIGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPL--VSGTGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + +IE L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVIE---TEATLLNRFFFHYMRTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ APT + + ++ S + + + + +D+
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIFVGKDVNKEKIASYESENIAIFQMKTKHIEIKDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G T+ AS + + ++++ +++PK+IGGK+APT G +
Sbjct: 277 LFFLGEKQILSLFVEGGQTVHASFLQTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L + VG D+ I
Sbjct: 337 DALSLEIQEMKHVGDDIKI 355
>gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
Length = 360
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 197/398 (49%), Gaps = 52/398 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC+I + G V GEG+ G AEV A+ A G+ RG
Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60
Query: 109 ATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
TAY+ +EP C +HT AL++AG+TRVV + +P G LR+ G+
Sbjct: 61 GTAYVTLEP--C--NHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGA-TLRAAGIA 115
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
++ ++E+ + NA + P ++KYA TLD G
Sbjct: 116 T-------EAGLLEQEAEEG---NAAWLTSVRRGRPHVLWKYAATLD------------G 153
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTPM 279
+IAA+ G + WISS SR V LR +DAVVVG T+R D+P L R G P+
Sbjct: 154 RIAAADGTSRWISSPESRADVHRLRAEADAVVVGSGTLRADDPHLAVRGRPGTDPADQPL 213
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSR 335
R+VL + A + D + APT++ A GV++V + ++
Sbjct: 214 RVVLDTRATVRPGARVLDDA-APTLIAVAEDADTGHLP-----GVDLVRLPADENGISVH 267
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ H RG S+L E G TLA + +++G + KV ++AP ++G T + + G+
Sbjct: 268 ALLAELHRRGVRSVLLEGGPTLAGAFVAAGAVDKVVGYLAPVLLGAGR--TALGDAGIDT 325
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSE 433
++ AL L ++GPD+ ++ +P+ +P P E
Sbjct: 326 IADALRLRITETVRIGPDLRVTA----VPEAVPTAPKE 359
>gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
Length = 375
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 31/389 (7%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F +D ++++A ++A K+ T P+P G +I GK+ G+GY G AEV+A+
Sbjct: 11 FVMNKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKE-GKIIGQGYHKKAGLPHAEVEAI 69
Query: 100 EA--GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRA 156
+ + + AT Y+N+EP + +G S A++ +GI RVV+G+R+ + G +
Sbjct: 70 NSVKDRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDINKKASG-GIER 128
Query: 157 LRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
L+ G+ V V + +EA+K +N I +R PF + K AM
Sbjct: 129 LKGAGIDVKV------GVLEDEAKK----LNEVFIENTLNRKPFFIMKAAM--------- 169
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276
+L G IA G + WI+S+ +R LRG + AV+VG NT+ D+P LT R G
Sbjct: 170 ---LLNGCIAVKGGVSQWITSEKARRFSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGYR 226
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----L 332
P R+VL L +P A ++ ++T + + ++ L + V +VE D
Sbjct: 227 QPKRVVLDMNLKIPISAKIFSEYPNNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEF 286
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N D+ E + S + E G + + L +K + APKI G A
Sbjct: 287 NPADLSEKLLENEICSCIVEGGSRTHGYFLKNKLYNKAYLLYAPKITGSYGAFNVAGFDA 346
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQ 421
++++A+ LID +++G D+L G+ +
Sbjct: 347 PKDLNEAIKLIDTKCKKIGDDILFEGYFK 375
>gi|428279800|ref|YP_005561535.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto
BEST195]
gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto
BEST195]
Length = 361
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 184/378 (48%), Gaps = 35/378 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH- 165
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVRE 123
Query: 166 -VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+L + +S +N +H + +P+ K A +LD GK
Sbjct: 124 GILADQAES------------LNEKFLHFMRTGLPYVTLKAAASLD------------GK 159
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVL 283
IA S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 160 IATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVIL 219
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYF 341
L++PE+A + APT + T A + +K L++ GV + +E + + DV++
Sbjct: 220 DTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKIL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA-- 399
+ G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M
Sbjct: 280 AEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPL 339
Query: 400 LDLIDICYEQVGPDMLIS 417
L DI Q+G D+ ++
Sbjct: 340 LQFTDIT--QIGRDIKLT 355
>gi|423483706|ref|ZP_17460396.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6X1-2]
gi|401141257|gb|EJQ48812.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6X1-2]
Length = 370
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 185/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIVGMGAHMRAGKEHAEVHALQMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 NAKNATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEKARADVHLYRHTHDAILVGVNTVVADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ APT I+V + + K Y S + + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVMTDGLAPTWIIVGKDVNKEKIASY-ESENIAIFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ + LS+ E G T+ AS + S +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLYLLGENQILSLFVEGGQTVHASFLQSNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTMQEMKQIGNDIKIVATLK 360
>gi|423674133|ref|ZP_17649072.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM062]
gi|401309684|gb|EJS15017.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM062]
Length = 370
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 186/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G++ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GEIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATITGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ PT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
Length = 379
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 187/386 (48%), Gaps = 35/386 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLCAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ R+V+ NPL + G +
Sbjct: 65 LHMAGEKAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H+ +R++L L P +++ + APT I+V + + K Y S+ + + +
Sbjct: 221 GKHS-IRVILDTHLRTPPSSHVITDTLAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTK 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT
Sbjct: 279 QIEIQDVLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ +L L +Q+G D+ I
Sbjct: 339 NGFSKLQDSLSLKIQEMKQIGDDIKI 364
>gi|386758914|ref|YP_006232130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus sp. JS]
gi|384932196|gb|AFI28874.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus sp. JS]
Length = 361
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 185/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A++ G T +P G ++ G+V G G G AEV A+ G+
Sbjct: 5 YMKLALDLANQGEGQTESNPLVGAVVVKD-GQVVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVK- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A K +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILPDQAEK----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRRTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQLAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILSE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTLAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|418032508|ref|ZP_12670991.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471371|gb|EHA31492.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 361
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 184/378 (48%), Gaps = 35/378 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH- 165
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVRE 123
Query: 166 -VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
+L + +S +N +H + +P+ K A +LD GK
Sbjct: 124 GILADQAES------------LNEKFLHFMRTGLPYVTLKAAASLD------------GK 159
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVL 283
IA S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 160 IATSTGDSKWITSEAARQDAQQYRKAHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVIL 219
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYF 341
L++PE+A + APT + T A + +K L++ GV + +E + + DV++
Sbjct: 220 DTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKIL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA-- 399
+ G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M
Sbjct: 280 AEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPL 339
Query: 400 LDLIDICYEQVGPDMLIS 417
L DI Q+G D+ ++
Sbjct: 340 LQFTDIT--QIGRDIKLT 355
>gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 379
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 188/385 (48%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ + D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKKMTDQEYMRIALLLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
++ G + AT Y+ +EP G L++ G+ RVV+ NPL + G R
Sbjct: 65 LQMAGQNAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 RLEEARIEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R+VL L P +++ APT ++ + +++ S+ + + + +
Sbjct: 221 GKH-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKH 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT
Sbjct: 280 IEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G ++ AL L +Q+G D+ I
Sbjct: 340 GFSKLQDALTLKIQEMKQIGDDIKI 364
>gi|379720854|ref|YP_005312985.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
3016]
gi|378569526|gb|AFC29836.1| riboflavin biosynthesis protein RibD [Paenibacillus mucilaginosus
3016]
Length = 370
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 186/381 (48%), Gaps = 29/381 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A +AG T +P GC++ G+V G G +G AE+ A+ G+
Sbjct: 5 DEMYMRIALQLAAAAAGQTGINPVVGCVL-VKDGRVVGMGAHLKRGDAHAEIHALNMAGA 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
G+TAY+ +EP HG S L++ G+ RVVV +P + G + LR+QG++
Sbjct: 64 EAAGSTAYVTLEPCSHHGRTGPCSDRLIREGVKRVVVAAVDPNPVVAGSGIARLRAQGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +S+ + EA ++ +R PF K A TLD G
Sbjct: 124 VTEGVLAAESEALNEAFNKYIV----------TRRPFVTVKTASTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIV 282
K+AA+ G + WI+ + +R V LR R A++ G TV D+P+LT R G +P+RI+
Sbjct: 162 KVAAAGGDSKWITGEAARGYVHTLRHRHQAILTGVGTVMADDPQLTTRLPVPGLSPVRII 221
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L +P E+ L +AP IV+T A ++ L + GV+V++ + D+
Sbjct: 222 ADSMLRIPLESKLLHDGEAPVIVLTTAEAPEDRRRALEALGVQVIDCGPGPAVDLEAALA 281
Query: 343 DRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKII-GGKNAPTPVSELGMVEMSQ 398
G L S+L E GG LA + + L K+ F APKII GG AP G M Q
Sbjct: 282 RLGELEIGSVLVEAGGKLAGAFLERRLADKLVLFFAPKIIGGGAEAPGTFDFPGFRAMRQ 341
Query: 399 ALDLIDICYEQVGPDMLISGF 419
A+ L + E G D+ +G+
Sbjct: 342 AIRLERMTVETFGEDVCFTGY 362
>gi|423657040|ref|ZP_17632339.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD200]
gi|401289783|gb|EJR95487.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD200]
Length = 370
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 184/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + + + S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ S + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHVSFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 NALSLKIQEMKQIGDDIKI 355
>gi|398311273|ref|ZP_10514747.1| riboflavin biosynthesis protein RibD [Bacillus mojavensis RO-H-1]
Length = 361
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 186/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+ +
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV V +R+P + G+ + + G++V+
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIIKSGIKRVFVAMRDPNPIVAGRGISMIEEAGIEVN- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GK A
Sbjct: 123 -----EGILADQAEQ----LNEKFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDVSKQPVRVILDN 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++P++AN+ APT + T A +K ++ GV++ +E D + DV++ +
Sbjct: 222 ELSIPDDANVICDQAAPTWIFTTTHADDDKKKRFSACGVKIFTLETDRIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + +G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKAGCFQEIIFYFAPKLIGGTLAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|384188175|ref|YP_005574071.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410676494|ref|YP_006928865.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis Bt407]
gi|452200562|ref|YP_007480643.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|409175623|gb|AFV19928.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis Bt407]
gi|452105955|gb|AGG02895.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 370
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A++ G
Sbjct: 3 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALQMAGQ 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L
Sbjct: 62 NAKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPL--VSGNGKRRLEEAR 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R+VL L P +++ APT ++ + +++ S+ + + + + + D+
Sbjct: 217 RVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDL 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + ++ LS+ E G ++ AS + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 337 DALTLKIQEMKQIGDDIKI 355
>gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
2CP-1]
Length = 392
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 195/400 (48%), Gaps = 35/400 (8%)
Query: 26 APSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGY 85
APS SA + AE ++R A A + G TSP+P G ++ V +
Sbjct: 6 APSGWRASARAPAPVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHH 65
Query: 86 LYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRN 144
A G AEV A+ A G+ RGA Y +EP D G S AL++AG+ RV VG +
Sbjct: 66 ARAGGPH-AEVVALRAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSD 124
Query: 145 PLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFK 204
P + G+ + LR G+ V + R +C +NAP T PF K
Sbjct: 125 PNPLVNGRGMARLRRHGVAV----------VKGVLRDACDRLNAPWFTFITEGRPFVTLK 174
Query: 205 YAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRD 264
A+TLD G+IA +G A W+S + +R V LR R DAV+VG T R D
Sbjct: 175 AAVTLD------------GRIATRTGDARWVSGEAARAWVHRLRDRVDAVLVGAGTARAD 222
Query: 265 NPRLTAR-HGGGHTPMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASR 322
+PRLT R GG P+R+VL L+LP L+ S APT+V A ++Y
Sbjct: 223 DPRLTTRLPRGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLVAHASAA--PARRY--GP 278
Query: 323 GVEVVEFDI----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
GVE+V ++ RD++ RG +L E G + A + +GL+ +V FVAPKI
Sbjct: 279 GVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEAGLVDRVAVFVAPKI 338
Query: 379 IGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
GG P V+ G M+ AL L + +E+VG D+L++G
Sbjct: 339 AGGDGVPL-VAGRGPARMADALRLEQVAFERVGDDLLVTG 377
>gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402776588|ref|YP_006630532.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus subtilis QB928]
gi|430758509|ref|YP_007209137.1| Riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|452915524|ref|ZP_21964150.1| riboflavin biosynthesis protein RibD [Bacillus subtilis MB73/2]
gi|132565|sp|P17618.1|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis]
gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168]
gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. subtilis str. 168]
gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4]
gi|402481768|gb|AFQ58277.1| Fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus subtilis QB928]
gi|407959571|dbj|BAM52811.1| bifunctionaldiaminohydroxyphosphoribosylaminopyrimidinedeaminase/5-
amino-6-(5-phosphoribosylamino) uracilreductase
[Bacillus subtilis BEST7613]
gi|407965146|dbj|BAM58385.1| bifunctionaldiaminohydroxyphosphoribosylaminopyrimidinedeaminase/5-
amino-6-(5-phosphoribosylamino) uracilreductase
[Bacillus subtilis BEST7003]
gi|430023029|gb|AGA23635.1| Riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|452115872|gb|EME06268.1| riboflavin biosynthesis protein RibD [Bacillus subtilis MB73/2]
Length = 361
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 185/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus subtilis BSn5]
gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis BSn5]
Length = 361
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 185/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVR- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|398788449|ref|ZP_10550605.1| riboflavin biosynthesis protein RibD [Streptomyces auratus AGR0001]
gi|396992187|gb|EJJ03302.1| riboflavin biosynthesis protein RibD [Streptomyces auratus AGR0001]
Length = 375
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 191/387 (49%), Gaps = 45/387 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ A +RRA ++A + G TSP+P GC++ S G+ AGEG+ G AE+ A+ A G
Sbjct: 8 ETAAMRRAIELAARGLGHTSPNPVVGCVVLDSEGRTAGEGWHQRAGGPHAEIHALRAAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
RG TA + +EP C +HT AL+ AGI RVV + +P G A
Sbjct: 68 RARGGTALVTLEP--C--NHTGRTGPCAQALIDAGIARVVYAVADPDPSATGGA------ 117
Query: 160 QGLQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
L + G D++ ++ EA N + R PF ++KYA TLD
Sbjct: 118 --LTLAAAGVDVEGGLLAVEAAAG----NEAWLTSVLRRRPFVLWKYAATLD-------- 163
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG--- 275
G++AA+ G + WI+S SR V LR +DAV+VG R D+P+L AR GG
Sbjct: 164 ----GRVAAADGTSRWITSPESRADVHRLRAAADAVIVGSGPARADDPQLGARIGGLADD 219
Query: 276 --HTPMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLAS--RGVEVVEFD 330
P+R+V+ + + A + D APT++ A LA R +
Sbjct: 220 EISQPLRVVVDSGATAVKAGARVLD-GTAPTLIAVAEDADASHLDGLAPLVRLPRAADGR 278
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
L+ +++ +DR S+L E G TLA + +++ ++ KV ++AP ++G P + +
Sbjct: 279 GLHLPALLQALYDREVRSVLLEGGPTLAGAFLAAQVVDKVVGYLAPVLLGA--GPAVLGD 336
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLIS 417
G+ ++QAL L E++GPD+ I+
Sbjct: 337 AGITTIAQALRLDVTDIERLGPDLRIT 363
>gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|451928673|pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
gi|451928674|pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
gi|451928675|pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
gi|451928676|pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 185/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 17 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 75
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 76 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR- 134
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 135 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 173
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 174 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 233
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 234 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 293
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 294 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 353
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 354 FTDIT--QIGRDIKLT 367
>gi|384175939|ref|YP_005557324.1| riboflavin biosynthesis protein RibD [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349595163|gb|AEP91350.1| riboflavin biosynthesis protein RibD [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 361
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 184/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKETGIEVR- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R ++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQCILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|406891355|gb|EKD36998.1| hypothetical protein ACD_75C01291G0004 [uncultured bacterium]
Length = 376
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 188/386 (48%), Gaps = 35/386 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A A K G TSP+P G +I G++ +GY GT AEV A+
Sbjct: 6 DEQFMRLALQEAKKGLGRTSPNPCVGAVIVRD-GRIIAKGYHKKAGTPHAEVNAIRQASE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP + G + L+ ++GI+RVVVG+ +P + G+ + LRSQG++
Sbjct: 65 AVSGATIYVTLEPCNHTGKTPPCTRLISESGISRVVVGMTDPNPLVDGKGIDFLRSQGVE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V S I+E+ C +N P I T R+P+ + K ++LD G
Sbjct: 125 V-------ASGILEQ---ECEAINRPFIKYITQRIPWVIMKAGVSLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PMRI 281
K+ G + WI+ + S V +R R DA++VG TV DNP LT R G T P+RI
Sbjct: 163 KLNYQHGQSGWITGEQSAIAVHKMRDRVDAILVGRRTVEIDNPSLTTRLSRGKTKDPVRI 222
Query: 282 VLTQTLNLPEEANLWDV--SDAPTIVV-TQRGARRKFQKYLASRGVEVVEFDI----LNS 334
++ L+ P + ++ V + APT V ++ K ++LA RGV++ D L+
Sbjct: 223 IVDSQLSSPLSSKVFQVGSNTAPTWVFHAADASQSKIAQFLA-RGVQLYPIDRKANGLDL 281
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++ + S+L E G + + + LI F AP I G N + + +
Sbjct: 282 SQLLSILGKKEICSVLVEGGARIHGAFLKEKLIDYAHLFYAP-IFAGDNGVSLIEGHPVP 340
Query: 395 EMSQALDLIDICYEQVGPDMLISGFL 420
A L + Y+++G DML+SG L
Sbjct: 341 GRLAAPRLDGVHYKRLGDDMLVSGRL 366
>gi|365157510|ref|ZP_09353769.1| riboflavin biosynthesis protein RibD [Bacillus smithii 7_3_47FAA]
gi|363623889|gb|EHL74984.1| riboflavin biosynthesis protein RibD [Bacillus smithii 7_3_47FAA]
Length = 361
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 187/381 (49%), Gaps = 33/381 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A +A+ G TSP+P G ++ G++ G G G + AE A++ GS
Sbjct: 6 YMKFALKLAESVNGQTSPNPPVGSVVVKE-GRIIGMGAHLKAGERHAERIALDMAGSEAE 64
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G L++ + RV V +P + G+ ++ L+ G++V
Sbjct: 65 GADVYVTLEPCSHYGKTPPCADYLIEKRVKRVFVATLDPNPLVAGKGIQKLKDAGIEV-- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ +EA++ + P H ++ PF K A+T D GKIA
Sbjct: 123 ----VTGICGQEAKQ----LYRPFFHFIQTKTPFVTIKTAVTAD------------GKIA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLTQ 285
++ + WI+S+ SR V LR DA++VG +TV DNP LT R G P+R++L
Sbjct: 163 TAAHDSKWITSEQSRQDVHLLRKNHDAILVGIHTVLHDNPLLTVRLPQGEKNPIRVILDT 222
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV-----MEY 340
L +P +AN+ D+ TIVV A K + L GV V+ S+DV ++
Sbjct: 223 HLRIPNDANVITNKDSETIVVCGCNASEKKELDLIRLGVTVIR---QKSQDVSIAELLQE 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
RG +++L E G + S + ++ ++APK+IGG+ A T S G+ +++ +L
Sbjct: 280 LGRRGIMTLLVEGGSEVNGSFLQEKAFQRLILYMAPKLIGGREALTSFSGKGVEKIADSL 339
Query: 401 DLIDICYEQVGPDMLISGFLQ 421
L E VGPD+ I+ ++
Sbjct: 340 PLTFEKVEMVGPDVKITASVK 360
>gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
gi|407706638|ref|YP_006830223.1| ABC transporter [Bacillus thuringiensis MC28]
gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
gi|407384323|gb|AFU14824.1| RibD [Bacillus thuringiensis MC28]
Length = 379
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 187/386 (48%), Gaps = 35/386 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ R+V+ NPL + G +
Sbjct: 65 LHMAGEKAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H+ +R++L L P +++ + APT I+V + + K Y S+ + + +
Sbjct: 221 GKHS-IRVILDTHLRTPPSSHVITDTLAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTK 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT
Sbjct: 279 QIEIQDVLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ +L L +Q+G D+ I
Sbjct: 339 NGFSKLQDSLSLKIQEMKQIGDDIKI 364
>gi|423669690|ref|ZP_17644719.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM034]
gi|401298817|gb|EJS04417.1| riboflavin biosynthesis protein RibD [Bacillus cereus VDM034]
Length = 370
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 186/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G++ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GEIIGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ PT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKV 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|449094824|ref|YP_007427315.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus subtilis XF-1]
gi|449028739|gb|AGE63978.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus subtilis XF-1]
Length = 361
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 184/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R ++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQCILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium
1_7_47_FAA]
gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium
1_7_47FAA]
Length = 370
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 189/398 (47%), Gaps = 48/398 (12%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
S D Y+ RA +A K G +P+P G +I G V G+GY G AE A+
Sbjct: 1 MSETSDNIYMGRALALAAKGEGRVNPNPLVGAVIVRD-GAVIGQGYHGFYGGPHAERAAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
++ + +GA Y+ +EP CH T A++++GI RVV+G +P + G+ + AL
Sbjct: 60 DSLTAPAKGAVLYVTLEPC-CHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAAL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+S G++V +Q + EE C+ N H +R P+ V KYAMT+D
Sbjct: 119 KSHGIEV------IQGVLEEE----CIRQNEVFFHFIRTRQPYVVMKYAMTMD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+ A S + WI+ + +R+ V R R AV+ G T+ D+P+LT R GG
Sbjct: 162 -----GRTATSGRLSRWITGEQAREHVHKTRNRLSAVMTGLGTILADDPQLTCRIPGGRN 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAP---TIVVT---QRGARRKFQKYLASRGVEVVEFDI 331
P+RI+ L P +N+ V AP TI+ T A F+ G E++ I
Sbjct: 217 PVRIICDTRLMTPLTSNV--VRTAPHVRTILATCCQDPAAMAPFK----DAGCEIL---I 267
Query: 332 LNSRD-------VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
L RD +ME S+L E G L SA+ G++HK+ A++APKI GG+
Sbjct: 268 LPERDGHTDLRFLMERLGGMDIDSVLLEGGSALNWSALDQGIVHKLQAYIAPKIFGGEKG 327
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
PV G+ A L +G D+L+ + P
Sbjct: 328 LCPVGGKGVELPGMAFSLEPPKITVLGRDILLESGVVP 365
>gi|375362842|ref|YP_005130881.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|371568836|emb|CCF05686.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
Length = 371
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 182/379 (48%), Gaps = 27/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G
Sbjct: 2 DEYYMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAINMAGR 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++
Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V L + EE +N +H + +P+ K A +LD G
Sbjct: 121 VKT---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A +G + WI+S+ +R R +++VG TV+ DNP LT R P+R++
Sbjct: 159 KTATETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVI 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L L +PE AN+ APT + T +GA + + L + G++V +E D ++ +V+
Sbjct: 219 LDTKLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVFPLETDRIHIPEVLSV 278
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M
Sbjct: 279 LAENGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVP 338
Query: 401 DLIDICYEQVGPDMLISGF 419
L Q+GPD+ ++
Sbjct: 339 HLQFTQITQIGPDIKLTAI 357
>gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
Length = 397
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 119/396 (30%), Positives = 183/396 (46%), Gaps = 45/396 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG---- 103
+++R D+A AG SP+P G ++ G V GEG G AE +A++A
Sbjct: 27 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86
Query: 104 -SFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ + AT Y+N+EP HG + L V+ + RVVVG +P +G+ +R LR QG
Sbjct: 87 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V + E A C +N H + P K A TLD
Sbjct: 147 VEVEV-------GVHEHA---CRRLNEAFFHHVDTGRPLVTLKTAQTLD----------- 185
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
G+IA +G + WI+ + +R V R D ++VG T D+PRLT RH G P+R+
Sbjct: 186 -GRIATRTGDSQWITGEAARTLVHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQPLRL 244
Query: 282 VLTQTLNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEV----------VEF 329
VL + L + L+ +D VV R + L +RG + ++
Sbjct: 245 VLDRKGTLSPDRTLFTDAHADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDL 304
Query: 330 DILNSRDVMEYFHDRGYL-SILWECGGTLAASAISSGLIHKVFAFVAPKIIG-GKNAPTP 387
L R + D L S+L E G LA + L+ + F FVAPK++G G+ A
Sbjct: 305 HALLQRLGTDAGRDAEPLQSLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDGRPA--- 361
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
+ +LG+ EM AL + + VG D+L+ G+ + +
Sbjct: 362 LHDLGITEMDGALTFAEQAWATVGADVLLRGYRRTV 397
>gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
Length = 373
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 119/396 (30%), Positives = 183/396 (46%), Gaps = 45/396 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG---- 103
+++R D+A AG SP+P G ++ G V GEG G AE +A++A
Sbjct: 3 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62
Query: 104 -SFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
+ + AT Y+N+EP HG + L V+ + RVVVG +P +G+ +R LR QG
Sbjct: 63 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V + E A C +N H + P K A TLD
Sbjct: 123 VEVEV-------GVHEHA---CRRLNEAFFHHVDTGRPLVTLKTAQTLD----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
G+IA +G + WI+ + +R V R D ++VG T D+PRLT RH G P+R+
Sbjct: 162 -GRIATRTGDSQWITGEAARTLVHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQPLRL 220
Query: 282 VLTQTLNLPEEANLWDV--SDAPTIVVTQRGARRKFQKYLASRGVEV----------VEF 329
VL + L + L+ +D VV R + L +RG + ++
Sbjct: 221 VLDRKGTLSPDRTLFTDAHADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDL 280
Query: 330 DILNSRDVMEYFHDRGYL-SILWECGGTLAASAISSGLIHKVFAFVAPKIIG-GKNAPTP 387
L R + D L S+L E G LA + L+ + F FVAPK++G G+ A
Sbjct: 281 HALLQRLGTDAGRDAEPLQSLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDGRPA--- 337
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
+ +LG+ EM AL + + VG D+L+ G+ + +
Sbjct: 338 LHDLGITEMDGALTFAEQAWATVGADVLLRGYRRTV 373
>gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
Length = 379
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 187/386 (48%), Gaps = 35/386 (9%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G + AT Y+ +EP G L++ G+ R+V+ NPL + G +
Sbjct: 65 LHMAGEKAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAGIEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H+ +R++L L P +++ + APT I+V + + K Y S+ + + +
Sbjct: 221 GKHS-IRVILDTHLRTPPSSHVITDALAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTK 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT
Sbjct: 279 QIEIQDVLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G ++ +L L +Q+G D+ I
Sbjct: 339 NGFSKLQDSLSLKIQEMKQIGDDIKI 364
>gi|387787380|ref|YP_006252448.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
ST556]
gi|379137122|gb|AFC93913.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
ST556]
Length = 398
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 183/383 (47%), Gaps = 33/383 (8%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 31 SEMSDSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALK 89
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L
Sbjct: 90 NCRESPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILE 148
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
LQV V I+E CL + T VP+ KYAMT+D
Sbjct: 149 ENNLQVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMTID-------- 190
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P
Sbjct: 191 ----GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNP 246
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILN 333
+RI+ L P + + + D T + T + K + Y + G E++ + ++
Sbjct: 247 IRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHID 305
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+
Sbjct: 306 LSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGI 364
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
+ A+ L + Q+G D LI
Sbjct: 365 SLPNDAIRLKPYAFSQIGNDYLI 387
>gi|423518806|ref|ZP_17495287.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA2-4]
gi|401159861|gb|EJQ67240.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA2-4]
Length = 370
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 39/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA+++G NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATITGESKWITGEEARADVHQYRHIHDAILIGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT---IVVTQRGARRKFQKYLASRGVEVVEFDI--LNS 334
R++L L P +++ ++D T I+V + + K Y S + V + +
Sbjct: 217 RVILDTHLRTPPSSHV--ITDGLTQTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEI 273
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G
Sbjct: 274 QDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFS 333
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQ 421
++ AL L +Q+G D+ I L+
Sbjct: 334 KLQDALSLTIQEMKQIGNDIKIVATLK 360
>gi|394993486|ref|ZP_10386231.1| hypothetical protein BB65665_13441 [Bacillus sp. 916]
gi|393805598|gb|EJD66972.1| hypothetical protein BB65665_13441 [Bacillus sp. 916]
Length = 371
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 181/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAIHMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVMEYFHD 343
L +PE AN+ APT + T +GA + + L + G++V+ E D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 ITQITQIGPDIKLTAI 357
>gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
WA1]
gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
WA1]
Length = 360
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 185/383 (48%), Gaps = 34/383 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGSF 105
++ A + A K GFTSP+P G +I GKV G GY G AE+ A + G
Sbjct: 1 MKMAIEEAKKGEGFTSPNPLVGAVIVKD-GKVIGIGYHKKCGENHAEINAFLDAKEKGEN 59
Query: 106 CRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
A Y+ +EP +G A+++ + RV++G + + G ++ L+ G++V
Sbjct: 60 VEDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEV 119
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V ++EE C +N + ++ PF V KYAMT+D GK
Sbjct: 120 IV-------NVLEE---ECRKLNEVFFYYIANKRPFIVMKYAMTID------------GK 157
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
IA SG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 158 IATVSGKSKWITSEKTREHSHRFRNKYSAIMVGINTVIEDNPTLNCRLPNTRNPIRIILD 217
Query: 285 QTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVME 339
+L + ++N+ + + T + T +K K L + G+E+++ + N +D+M
Sbjct: 218 SSLKMGLDSNICKTAKEIKTFIATISDDDKKI-KELENVGIEIIKTENDNGKVSLKDLMR 276
Query: 340 YF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ S+ E G L AS + L++K ++APKI GG A P+ + + +
Sbjct: 277 ILGEEKDIDSVYVEGGAALHASLLKEKLVNKALIYIAPKIFGGFEAKGPIGGEWIDDPND 336
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A+ L++ ++ D+ + +L+
Sbjct: 337 AVKLVEGSITKIEDDLFLEYYLK 359
>gi|423512214|ref|ZP_17488745.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA2-1]
gi|402449185|gb|EJV81022.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuA2-1]
Length = 370
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 185/385 (48%), Gaps = 35/385 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ GK+ G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GKIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRILEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IKV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ PT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++ K+IGGK+APT G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISSKLIGGKDAPTLFGGAGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 336 QDALSLTIQEMKQIGNDIKIVATLK 360
>gi|385265302|ref|ZP_10043389.1| RibD [Bacillus sp. 5B6]
gi|385149798|gb|EIF13735.1| RibD [Bacillus sp. 5B6]
Length = 371
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 181/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAINMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVMEYFHD 343
L +PE AN+ APT + T +GA + + L + G++V+ E D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|429505714|ref|YP_007186898.1| hypothetical protein B938_11070 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429487304|gb|AFZ91228.1| hypothetical protein B938_11070 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 371
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 181/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAIHMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVMEYFHD 343
L +PE AN+ APT + T +GA + + L + G++V+ E D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|422933548|ref|ZP_16966468.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339891537|gb|EGQ80501.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 369
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 179/374 (47%), Gaps = 35/374 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G +GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ +
Sbjct: 60 NEAGENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIME 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V LG I+E+ K VN + +++P+ K +TLD
Sbjct: 120 ETGIEVE-LG------ILEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HG 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R +G
Sbjct: 162 ----GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDVEKYG 217
Query: 274 -GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P RIV+ L P EA + +D I+VT R K ++Y L +R + +E
Sbjct: 218 IEKRNPFRIVVDPNLESPIEAKFLNFNDEKAIIVTSNDNRELEKIKEYKNLGTRFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I +D+++ S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMKDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDL 402
+ M L
Sbjct: 337 NGFNFDNMEDVFKL 350
>gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
Length = 379
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 186/391 (47%), Gaps = 35/391 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A ++G TSP+P G ++ + + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDS-NIVGMGAHMRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ + RVV+ NPL + G R
Sbjct: 65 LHMAGERAKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPL--VSGNGKR 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L ++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 123 KLEEAAIEV--------TTGVLEAEAT--LLNRYFFHYMKTKQPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI- 331
G H P+R++L L P +++ PT I+V + + K Y S + V +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQ 278
Query: 332 -LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
+ +DV+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT
Sbjct: 279 QIEIQDVLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGG 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
G ++ AL L +Q+G D+ I L+
Sbjct: 339 AGFSKLQDALSLTIQEMKQIGNDIKIVATLK 369
>gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SP195]
gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SP195]
Length = 384
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 191/399 (47%), Gaps = 37/399 (9%)
Query: 29 LVANSAPVFCKF----SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEG 84
+ A S+P+F + S D+ Y++ A +A K AG+ +P+P G +I + G+G
Sbjct: 1 MYALSSPLFKAYFFGGSEMSDSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQG 59
Query: 85 YLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI 142
Y G AE A++ GAT Y+ +EP CH T + A++ +GITRVV+G
Sbjct: 60 YHEFFGGPHAERNALKNCRESPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGS 118
Query: 143 RNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSV 202
+ + G+ V+ L LQV V I+E CL + T VP+
Sbjct: 119 LDCNPIVSGKGVKILEENNLQVTV-------GILEN---ECLNLIKSFRKYITQHVPYVF 168
Query: 203 FKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVR 262
KYAM++D GKIA + + WI+ + +R V LR A++VG NTV
Sbjct: 169 MKYAMSMD------------GKIATKTNQSKWITEEEARKHVQQLRHHVSAIMVGVNTVI 216
Query: 263 RDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLAS 321
+D+P LT R G P+RI+ L P + + + D T + T + K + Y +
Sbjct: 217 QDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QN 275
Query: 322 RGVEVVEF----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPK 377
G E++ + ++ +M++ + S++ E G + SA+ ++ ++ ++APK
Sbjct: 276 HGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPK 335
Query: 378 IIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
I GG +A PV G+ + A+ L + Q+G D LI
Sbjct: 336 IFGG-SAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLI 373
>gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D11]
gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D11]
Length = 370
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 184/389 (47%), Gaps = 35/389 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G +GAT Y+ +EP G + +++AGI + VV +P + G+ ++ +
Sbjct: 60 NEAGENAKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIE 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V LG I+E+ K VN + +++P+ K +TLD
Sbjct: 120 DAGIEVK-LG------ILEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----- 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ----GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFG 217
Query: 274 -GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P R+V+ L P EA + +D I+VT R K ++Y L +R + +E
Sbjct: 218 IEKRNPFRVVIDPNLESPIEAKFLNFNDGKAIIVTSNDNRELEKIKEYKNLGTRFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I +D+++ G S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMKDILKELGKLGIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLIS 417
+ M L + + G ++ I
Sbjct: 337 NGFNFDNMEDVFKLPNSKFNIYGDNISIE 365
>gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
Length = 392
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 194/401 (48%), Gaps = 35/401 (8%)
Query: 26 APSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGY 85
APS SA + AE ++R A A + G TSP+P G ++ V +
Sbjct: 6 APSGRRASARAPAPVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHH 65
Query: 86 LYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRN 144
A G AEV A+ A G+ RGA Y +EP D G S AL++AG+ RV VG +
Sbjct: 66 ARAGGPH-AEVVALRAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSD 124
Query: 145 PLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFK 204
P + G+ + LR G+ V + R C +NAP T PF K
Sbjct: 125 PNPLVNGRGMARLRRHGVAV----------VKGVLRAECDRLNAPWFTFITEGRPFVTLK 174
Query: 205 YAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRD 264
A+TLD G+IA +G A W+S + +R V LR R DAV+VG T R D
Sbjct: 175 AAVTLD------------GRIATRTGDARWVSGEAARAWVHRLRDRVDAVLVGAGTARAD 222
Query: 265 NPRLTAR-HGGGHTPMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASR 322
+PRLT R GG P+R+VL L+LP L+ S APT+V A ++Y
Sbjct: 223 DPRLTTRLPRGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLVAHASAA--PARRY--GP 278
Query: 323 GVEVVEFDI----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
GVE+V ++ RD++ RG +L E G + A + +GL+ +V FVAPKI
Sbjct: 279 GVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEAGLVDRVAVFVAPKI 338
Query: 379 IGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
GG P V+ G M+ AL L + +E+VG D+L++G
Sbjct: 339 AGGDGVPL-VAGRGPARMADALRLEQVAFERVGDDVLVTGV 378
>gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
11563]
gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
11563]
Length = 364
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 189/381 (49%), Gaps = 35/381 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---GS 104
Y++ A D+A+ G+T +P G +I ++ ++ G GY G AE +A++ G
Sbjct: 4 YMQEALDLAELGQGWTRSNPMVGAVIVKNS-QIIGRGYHQQYGGLHAEREALKDANEQGH 62
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP CH T A+++ GI +VVV +P + G+ ++ LR+ +
Sbjct: 63 DVKGATMYVTLEPC-CHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V ++ ++ E + +N + T + P+ KYAMTLD
Sbjct: 122 EV-------ETGLLAEESED---LNRKFNYFMTHQRPYVTMKYAMTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMR 280
G+ AA +G + WI+ K +R+ V R R+ +++VG TV D+P LT R G P+R
Sbjct: 160 GRTAAYTGDSQWITDKIAREHVHYQRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIR 219
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
IV +L LP + L + + PTI+ T Q Y A+ +V + N D+++
Sbjct: 220 IVCDTSLKLPLNSQLVATAKETPTIIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLD 279
Query: 340 Y---FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+G SI E G L AS + +GLI ++ ++ PK+IGG + +P+S G +M
Sbjct: 280 LITQLGQQGIQSIYVEGGSKLNASLLEAGLIQEIHTYIGPKVIGGFDQYSPISGFGFPQM 339
Query: 397 SQALDLIDICYEQVGPDMLIS 417
QAL +G D+LI
Sbjct: 340 DQALTSNVQAITSLGKDLLIE 360
>gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus
anthracis str. A2012]
Length = 370
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ S APT I+V + K Y S+ + + + + +DV
Sbjct: 218 VILDTHLRTPPSSHVITDSLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 277 LHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSXLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
AL +Q+G D+ I
Sbjct: 337 DALSXEIQEMKQIGDDIKI 355
>gi|357402936|ref|YP_004914861.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386359016|ref|YP_006057262.1| riboflavin biosynthesis protein RibD [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|337769345|emb|CCB78058.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365809524|gb|AEW97740.1| riboflavin biosynthesis protein RibD [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 373
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 181/374 (48%), Gaps = 29/374 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A + G TSP+P GC++ + G+VAGEG+ G AEV A+ G RG
Sbjct: 10 MRRAVALAARGLGHTSPNPVVGCVVLDADGRVAGEGWHRRAGGPHAEVHALREAGDRARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S AL+ AGI RVV + +P G A R LR+ G+ V
Sbjct: 70 GTAVVTLEPCDHTGRTGPCSQALIDAGIRRVVHAVADPDPTASGGAGR-LRAAGIDVEAG 128
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
++ EA + + R PF +KYA TLD G+ AA
Sbjct: 129 LLAAEAARGNEAWLASV----------RHRRPFVTWKYAATLD------------GRSAA 166
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT--PMRIVLTQ 285
+ G + WI+S +R V LR +DAV+VG T+R D+P L R G P+R+V+
Sbjct: 167 ADGTSRWITSDAARAEVHRLRAEADAVLVGSGTLRADDPHLAVRGVPGEVTQPLRVVVDT 226
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRG 345
+ A + D + APT++ A A R L+ ++ H R
Sbjct: 227 EATVEPGARVLDDA-APTLIAVAEDADAGHLGARALRLPRAATGPGLDIPALLTALHQRD 285
Query: 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDI 405
S+L E G TLA + +++ + KV ++AP ++G P +++ G+ ++QAL L
Sbjct: 286 VRSVLLEGGPTLAGAFLAADAVDKVVGYLAPTLLGA--GPAALADAGVRTIAQALRLDLA 343
Query: 406 CYEQVGPDMLISGF 419
+VGPD+ ++ +
Sbjct: 344 EAVRVGPDLRVTAY 357
>gi|406910998|gb|EKD50885.1| Riboflavin biosynthesis protein RibD [uncultured bacterium]
Length = 365
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 164/336 (48%), Gaps = 31/336 (9%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A +A K AG SP+P GC+I G+V G+GY G AEV A++ G RGAT
Sbjct: 4 ALKLARKGAGRVSPNPLVGCVI-VKNGQVVGKGYHKKYGDYHAEVNALKMAGHKARGATL 62
Query: 112 YLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
Y+N+EP +G V A++ AGI RVV+ +++P G+++ L+ G++V V
Sbjct: 63 YVNLEPCFHYGKTPPCVDAVIAAGIKRVVIAMQDPNPKTDGRSITKLKRHGIEVCV---- 118
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
+EAR+ +N IH T + P+ + K A +LD G I A G
Sbjct: 119 --GVCAKEARE----LNQYFIHAMTHKQPYVIVKVAQSLD------------GMITAQKG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLP 290
I+ K + D V LR AV+VG NTVR D+P LT R+ P RI+L L+LP
Sbjct: 161 QRTQITGKRAVDYVQRLRSEVSAVLVGVNTVRVDDPLLTVRNPKKPQPKRIILDSNLSLP 220
Query: 291 EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI------LNSRDVMEYFHDR 344
NL+ S I+V AR K RGV V+ D+ L+ + V++ +D
Sbjct: 221 HTVNLFGASGGQVILVCALPARHKKVLAFTKRGVVVIS-DVPRDRQGLDLKYVLKSLYDL 279
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
G S+L E G + S ++ L + AP + G
Sbjct: 280 GLRSVLVEGGAKVFRSFLTQKLADEWQIITAPVVYG 315
>gi|423368164|ref|ZP_17345596.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD142]
gi|401081382|gb|EJP89658.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD142]
Length = 370
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 182/384 (47%), Gaps = 33/384 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G T P+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTRPNPMVGAVVVKD-GNIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEVG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + + EA + L+N H ++ PF K AM+LD
Sbjct: 120 IEV--------TTGVLEAEAT--LLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R GG P+R
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTRISNGGKHPIR 217
Query: 281 IVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
++L L P +++ PT I+V + + K Y S + V + + +DV
Sbjct: 218 VILDTHLRTPPSSHVITDGLTPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTQQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ ++ LS+ E G T+ A+ + + +++ +++PK+IGGK+APT G ++
Sbjct: 277 LSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 337 DALSLTIQEMKQIGNDIKIVATLK 360
>gi|423378029|ref|ZP_17355313.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1O-2]
gi|423547416|ref|ZP_17523774.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB5-5]
gi|423622802|ref|ZP_17598580.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD148]
gi|401179137|gb|EJQ86310.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB5-5]
gi|401259575|gb|EJR65749.1| riboflavin biosynthesis protein RibD [Bacillus cereus VD148]
gi|401636295|gb|EJS54049.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG1O-2]
Length = 370
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 183/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLCAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ R+V+ NPL + G + L G
Sbjct: 62 KAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKKKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +GG H+ +
Sbjct: 159 -GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-I 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDV 337
R++L L P +++ + APT ++ + ++ S+ + + + + +DV
Sbjct: 217 RVILDTHLRTPPSSHVITDTLAPTWIIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDV 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT G ++
Sbjct: 277 LDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQ 336
Query: 398 QALDLIDICYEQVGPDMLI 416
+L L +Q+G D+ I
Sbjct: 337 DSLSLKIQEMKQIGDDIKI 355
>gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
Length = 383
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 41/386 (10%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y++ A +A K AG+ +P+P G +I ++ G+GY G AE A++
Sbjct: 17 KMSDTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDN-RIIGQGYHEIFGGLHAERNALKN 75
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
GAT Y+ +EP CH T A++++GITRVVVG + + G+ V+ L
Sbjct: 76 CRESPVGATLYVTLEPC-CHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEE 134
Query: 160 QGLQVHVLGEDLQSK-IIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+QV + +++ + +I+ RK T +P+ KYAMT+D
Sbjct: 135 NNIQVVIGILEMECQQLIKVFRK-----------YVTRHIPYVFMKYAMTMD-------- 175
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA + + WIS + +R +V R + A++VG NTV +D+P LT R G P
Sbjct: 176 ----GKIATYTNQSKWISGEKARKQVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENGENP 231
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVV-------EFD 330
+RIV L P + + + D T + T K Y G E++ D
Sbjct: 232 IRIVCDTDLRTPITSKIIKTANDIKTYIATSSIDESKIALYRKC-GCEIIYTKKKGNHID 290
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
++N +M+ + S+L E G + SA+ ++ +V ++APKI GG +A +PVS
Sbjct: 291 LMN---LMQCLGNMQIDSLLLEGGSAMNWSALEQQIVDEVQIYIAPKIFGG-SAKSPVSG 346
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLI 416
G+ + A+ L + QVG D I
Sbjct: 347 QGVAFPNDAIMLKPYAFSQVGNDYFI 372
>gi|423550138|ref|ZP_17526465.1| riboflavin biosynthesis protein RibD [Bacillus cereus ISP3191]
gi|401189754|gb|EJQ96804.1| riboflavin biosynthesis protein RibD [Bacillus cereus ISP3191]
Length = 370
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 181/380 (47%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A+ + G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGD 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ + RVV+ NPL + G R L G
Sbjct: 62 KAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPL--VSGNGKRKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---AEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ APT I+V + K Y S+ + + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDGLAPTWIIVGTDVNQEKIASY-ESKNIAIFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ AS + + +++ +++PK+IGG APT G +
Sbjct: 276 VLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTL 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
AL L +Q+G D+ I
Sbjct: 336 QDALSLEIQEMKQIGDDIKI 355
>gi|410647318|ref|ZP_11357753.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
agarilytica NO2]
gi|410133173|dbj|GAC06152.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
agarilytica NO2]
Length = 372
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 51/403 (12%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
+FS A DA + A +A+K TSP+PN GC+I G + G+G+ GT AE+
Sbjct: 1 MTQFS-ALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDPKGNIVGQGWHQKAGTPHAEI 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVR 155
A+ G +GATAY+ +EP + HG S AL++AG++RVV + +P + G ++
Sbjct: 60 HAIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+ V S ++E K+ +N I R + +P+ K A +LD
Sbjct: 120 KLSDAGVAV-------SSGLLEHEAKA---LNLGFIKRMKTGMPWVTVKLASSLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-- 273
GK A ++G + WI+ +R+ V R +S A++ G TV DNP L R+
Sbjct: 165 -------GKTALNNGESQWITGPLAREDVQRHRAKSCAILSGSGTVLADNPSLNVRYSEL 217
Query: 274 ----------GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYL 319
P+RI+L + + +L+ +S +P +++ + F ++Y
Sbjct: 218 GYVKSELTEENLRQPVRILLDGRNQMRPDLHLFSLS-SPIVIINSQPNTTDFPAHVEQYQ 276
Query: 320 A-SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
A S G + L+ DVM++ RG+ + E G LA + + + LI ++ + APK+
Sbjct: 277 ALSNGAQ------LDLHDVMKHLGQRGFNQLWVEAGAKLAGALLQNKLIDELILYQAPKL 330
Query: 379 IGGKNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+G K V EL +M QA L QVGPD+ ++ L
Sbjct: 331 LGDKGRDLFAVDEL--TQMQQAFQLQWQDVRQVGPDLKLTARL 371
>gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
3_1_53]
gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
3_1_53]
Length = 366
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 184/384 (47%), Gaps = 43/384 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A K AG+ +P+P G +I ++ G+GY G AE A++
Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDN-RIIGQGYHEIFGGLHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A++++GITRVVVG + + G+ V+ L +
Sbjct: 62 SPVGATLYVTLEPC-CHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNI 120
Query: 163 QVHVLG--EDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
QV V+G E ++I+ RK T +P+ KYAMT+D
Sbjct: 121 QV-VIGILEMECQQLIKVFRK-----------YVTRHIPYVFMKYAMTMD---------- 158
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA + + WIS + +R +V R + A++VG NTV +D+P LT R G P+R
Sbjct: 159 --GKIATYTNQSKWISGEKARKQVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENGENPIR 216
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVV-------EFDIL 332
IV L P + + + D T + T K Y G E++ D++
Sbjct: 217 IVCDTDLRTPITSKIIKTANDIKTYIATSSIDESKIALYRKC-GCEIIYTKKKGNHIDLM 275
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N +M+ + S+L E G + SA+ ++ +V ++APKI GG +A +PVS G
Sbjct: 276 N---LMQCLGNMQIDSLLLEGGNAMNWSALEQQIVDEVQIYIAPKIFGG-SAKSPVSGQG 331
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ + A+ L + QVG D I
Sbjct: 332 VAFPNDAIMLKPYAFSQVGNDYFI 355
>gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
WGA-A3]
gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
WGA-A3]
Length = 362
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 185/375 (49%), Gaps = 54/375 (14%)
Query: 73 IATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT---AVSA 129
+ + G V G GY G AE+ A+ + RGAT Y +EP CH + V A
Sbjct: 5 VIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEP-CCHTNKRTPPCVPA 63
Query: 130 LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV--LGEDLQSKIIEEARKSCLLVN 187
++ +G+ R+V+ +R+P + G+ +R LR GL V V LG++ +N
Sbjct: 64 ILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQ------------LN 111
Query: 188 APLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDL 247
+H ++ PF V K AMTLD GKIA +SG + WI+ +R V L
Sbjct: 112 EVYLHWMKTKRPFVVLKAAMTLD------------GKIATASGESQWITGAKARAHVHQL 159
Query: 248 RGRSDAVVVGGNTVRRDNPRLTARHGGGH-------TPMRIVLTQTLNLPEEAN-LWDVS 299
R + D + VG TV +D+P+LT R GG P+R+++ L P +A L +
Sbjct: 160 RSQVDVIAVGVETVLKDDPQLTVRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIE 219
Query: 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVMEYFHDRGYLSILWECGG 355
APT++ T + A + + L GV+V+ +R ++ + G +S+L E G
Sbjct: 220 QAPTVIATTKLAGPRKVERLRKMGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGS 279
Query: 356 TLAASAISSGLIHKVFAFVAPKIIGGK------NAPTPVSELGMVEMSQALDLIDICYEQ 409
L A+ + +GL+++V +VAP ++GG+ P+P +++ L + ++ +
Sbjct: 280 ELNAAFLRAGLVNRVALYVAPSLLGGQLTKGLLGGPSP------GRLAEILPVSNLQVQT 333
Query: 410 VGPDMLISGFLQPIP 424
+G DML++G + +P
Sbjct: 334 LGEDMLVTGNVVSLP 348
>gi|423448694|ref|ZP_17425573.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5O-1]
gi|423464224|ref|ZP_17440992.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6O-1]
gi|401129288|gb|EJQ36971.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG5O-1]
gi|402420491|gb|EJV52762.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG6O-1]
Length = 370
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 185/380 (48%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ R+V+ NPL + G + L G
Sbjct: 62 KAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKKKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +GG H+ +
Sbjct: 159 -GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-I 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ + APT I+V + + K Y S+ + + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDTLAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT G ++
Sbjct: 276 VLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
+L L +Q+G D+ I
Sbjct: 336 QDSLSLKIQEMKQIGDDIKI 355
>gi|423541178|ref|ZP_17517569.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB4-10]
gi|401172366|gb|EJQ79587.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB4-10]
Length = 370
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 185/380 (48%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ R+V+ NPL + G + L G
Sbjct: 62 KAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKKKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +GG H+ +
Sbjct: 159 -GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-I 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ + APT I+V + + K Y S+ + + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDTLAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT G ++
Sbjct: 276 VLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
+L L +Q+G D+ I
Sbjct: 336 QDSLSLKIQEMKQIGDDIKI 355
>gi|417697658|ref|ZP_12346831.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41317]
gi|418147667|ref|ZP_12784434.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13856]
gi|419452401|ref|ZP_13992376.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP03]
gi|419505180|ref|ZP_14044841.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49194]
gi|421231017|ref|ZP_15687667.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2080076]
gi|421244089|ref|ZP_15700594.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2081685]
gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41317]
gi|353813865|gb|EHD94092.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13856]
gi|379607094|gb|EHZ71840.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49194]
gi|379628364|gb|EHZ92968.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP03]
gi|395597214|gb|EJG57421.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2080076]
gi|395611055|gb|EJG71129.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2081685]
Length = 366
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAMT+D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
Length = 369
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 177/374 (47%), Gaps = 35/374 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G +GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ +
Sbjct: 60 NEAGENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIE 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V LG ++E+ K VN + +++P+ K +TLD
Sbjct: 120 DAGIEVK-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----- 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ----GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFG 217
Query: 274 -GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P R+V+ L P EA + +D I++T R K ++Y L +R + +E
Sbjct: 218 IEKRNPFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNRELEKIKEYKNLGTRFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I +D+++ S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMKDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAAEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDL 402
+ M L
Sbjct: 337 NGFNFDNMEDVFKL 350
>gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
39149]
gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
39149]
Length = 353
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 185/380 (48%), Gaps = 51/380 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA +A + G TSP+P GC++ + G+V GEG+ G AE+ A+ G RG
Sbjct: 10 MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGRRARG 69
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S AL+ AG+ RVV+ + +P G A LR+ GL V V
Sbjct: 70 GTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASGGAA-TLRAGGLDVEVG 128
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
++ EA L + + R P+ +KYA TLD G+ AA
Sbjct: 129 VRAAEA----EAGNVAWLTS---MRRGW---PYVTWKYAATLD------------GRSAA 166
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-----PMRIV 282
+ G + WI+S+ +R V LRG DAV+ G TV D+PRLTAR+ T P+R+V
Sbjct: 167 ADGTSMWITSEAARIDVHALRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVV 226
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV---EVVEFDILNSRDVME 339
+ P +A + D GA R + A G V+ L +
Sbjct: 227 VDTFGRTPADARVRD------------GAARTWVATAAEVGAGPDGRVDLPAL-----LA 269
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
H RG + L E G LA + +++GL+ +V +VAPK++G PT +++ G+ ++ A
Sbjct: 270 ELHHRGVRAALLEGGPKLAGAFLAAGLVDRVVGYVAPKLLGA--GPTALADAGVTTIADA 327
Query: 400 LDLIDICYEQVGPDMLISGF 419
+DL QVGPD+ I+
Sbjct: 328 IDLEITDVTQVGPDLRITAL 347
>gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|384158664|ref|YP_005540737.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens TA208]
gi|384164894|ref|YP_005546273.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens LL3]
gi|384167725|ref|YP_005549103.1| riboflavin biosynthesis protein ribD [Bacillus amyloliquefaciens
XH7]
gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens TA208]
gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens LL3]
gi|341827004|gb|AEK88255.1| riboflavin biosynthesis protein ribD [Bacillus amyloliquefaciens
XH7]
Length = 371
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 181/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T P+P G ++ + G++ G G G AEV A+ GS +
Sbjct: 5 YMNTAIELARRGEGQTQPNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAINMAGSHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + + +P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L +PE AN+ APT + T G+ + + L + G++V +E D ++ +V+ +
Sbjct: 222 KLTVPETANVLTDGAAPTWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + +G ++ + AP +IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKAGCFDELHFYFAPTLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|365864377|ref|ZP_09404064.1| putative riboflavin/cytosine deaminase [Streptomyces sp. W007]
gi|364006173|gb|EHM27226.1| putative riboflavin/cytosine deaminase [Streptomyces sp. W007]
Length = 366
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 186/399 (46%), Gaps = 60/399 (15%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D +RRA +A + G TSP+P GC+I + G V GEG+ G AEV A+ A
Sbjct: 4 AADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVVGEGFHQRAGGPHAEVHALRAA 63
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNP-------LQHLRGQAV 154
G RG+TAY+ +EP D G S AL+ AGI+RVV + +P LR V
Sbjct: 64 GGRARGSTAYVTLEPCDHTGRTGPCSRALLAAGISRVVYAVADPNPGAAGGGDTLRHAGV 123
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
RA QGL + + R P+ ++KYA TLD
Sbjct: 124 RA--EQGLLAEEAEAGNAAWLTSVRRGR----------------PYVLWKYAATLD---- 161
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
G+IAA+ + WI+S +R V LR +DAV+VG T R D+P+L R
Sbjct: 162 --------GRIAAADATSRWITSPEARADVHRLRAEADAVLVGSGTARTDDPQLAVRGID 213
Query: 275 GHT-PMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARR---------KFQKYLASRG 323
G T P+R+V+ T + A + D APT+V AR + + A G
Sbjct: 214 GVTQPLRVVVDTNATAVKPGARVLD-DTAPTLVAVADDARAGHLPEAAVLRLPRAGAGPG 272
Query: 324 VEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
+++ + H RG S+L E G TLA + +++G + KV ++AP ++G
Sbjct: 273 LDITAL--------LGALHTRGVRSVLLEGGPTLAGAFVAAGTVDKVVGYLAPVLLGA-- 322
Query: 384 APTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
P +++ G+ +S+A L ++GPD+ I+ P
Sbjct: 323 GPAALADAGISTISRAFRLDVTETVRIGPDLRITAVPAP 361
>gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
Length = 384
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 175/352 (49%), Gaps = 35/352 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ Y++ A + A K GF +P+P G +I + GK+ GEGY G AE A+
Sbjct: 21 ECKYMQLALENAKKGVGFVNPNPMVGAVIVKN-GKIIGEGYHKKYGGLHAERNALNNCSE 79
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ AT Y+ +EP CH T A+++ I +VV+ +P + G+++ L+ +G+
Sbjct: 80 NPKDATMYVTLEPC-CHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGI 138
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V L E+ K+ E RK T++ PF +FKYAMT+D
Sbjct: 139 KVEKGLLENEGDKLNETFRKF-----------ITTKKPFVLFKYAMTMD----------- 176
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA + WI+ + +R V R + ++VG +TV DNP L + G P+RI
Sbjct: 177 -GKIATKINESKWITGEEARLNVQKTRHKYSGIMVGVDTVIIDNPMLNCKIENGLNPIRI 235
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVE----FDILNSRD 336
+ L P + + + + PTI+ T K ++Y+ +G E+++ ++ +D
Sbjct: 236 ICDTNLRTPIGSKIVSTAKEIPTIIATCSDDEIKKEQYI-EKGCEILQIKIKKKKIDLQD 294
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
+M ++ SIL E G TLA SA G++ K+ A++APKI GG N T V
Sbjct: 295 LMSKLGEKKIDSILLEGGATLAWSAFERGIVDKIQAYIAPKIFGG-NGKTAV 345
>gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
gi|373122631|ref|ZP_09536493.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
21_3]
gi|373453079|ref|ZP_09544977.1| riboflavin biosynthesis protein RibD [Eubacterium sp. 3_1_31]
gi|422330201|ref|ZP_16411224.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
6_1_45]
gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
gi|371654763|gb|EHO20126.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
6_1_45]
gi|371663062|gb|EHO28254.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
21_3]
gi|371964226|gb|EHO81756.1| riboflavin biosynthesis protein RibD [Eubacterium sp. 3_1_31]
Length = 366
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 184/384 (47%), Gaps = 43/384 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A +A K AG+ +P+P G +I ++ G+GY G AE A++
Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDN-RIIGQGYHEIFGGLHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T A++++GITRVVVG + + G+ V+ L +
Sbjct: 62 SPVGATLYVTLEPC-CHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNI 120
Query: 163 QVHVLG--EDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
QV V+G E ++I+ RK T +P+ KYAMT+D
Sbjct: 121 QV-VIGILEMECQQLIKVFRK-----------YVTRHIPYVFMKYAMTMD---------- 158
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
GKIA + + WIS + +R +V R + A++VG NTV +D+P LT R G P+R
Sbjct: 159 --GKIATYTNQSKWISGEKARKQVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENGENPIR 216
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVV-------EFDIL 332
IV L P + + + D T + T K Y G E++ D++
Sbjct: 217 IVCDTDLRTPITSKIIKTANDIKTYIATSSIDESKIALYRKC-GCEIIYTKKKGNHIDLM 275
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
N +M+ + S+L E G + SA+ ++ +V ++APKI GG +A +PVS G
Sbjct: 276 N---LMQCLGNMQIDSLLLEGGSAMNWSALEQQIVDEVQIYIAPKIFGG-SAKSPVSGQG 331
Query: 393 MVEMSQALDLIDICYEQVGPDMLI 416
+ + A+ L + QVG D I
Sbjct: 332 VAFPNDAIMLKPYAFSQVGNDYFI 355
>gi|423441150|ref|ZP_17418056.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X2-1]
gi|423533566|ref|ZP_17509984.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB2-9]
gi|402417811|gb|EJV50111.1| riboflavin biosynthesis protein RibD [Bacillus cereus BAG4X2-1]
gi|402463785|gb|EJV95485.1| riboflavin biosynthesis protein RibD [Bacillus cereus HuB2-9]
Length = 370
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 185/380 (48%), Gaps = 35/380 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+ AT Y+ +EP G L++ G+ R+V+ NPL + G + L G
Sbjct: 62 KAKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPL--VSGNGKKKLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IEV-------TTGVLE---TEAVLLNRYFFHYMKTKRPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ +R V R DA++VG NTV DNP LT R +GG H+ +
Sbjct: 159 -GKTATVTGESKWITGAEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-I 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ + APT I+V + + K Y S+ + + + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDALAPTWIIVGKDVNKEKIASY-ESKNIAIFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V++ ++ LS+ E G T+ AS + + +++ +++PK+IGGK APT G ++
Sbjct: 276 VLDLLGEKQILSLFIEGGQTVHASFLQTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKL 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
+L L +Q+G D+ I
Sbjct: 336 QDSLSLKIQEMKQIGDDIKI 355
>gi|402310515|ref|ZP_10829479.1| riboflavin biosynthesis protein RibD [Eubacterium sp. AS15]
gi|400368438|gb|EJP21449.1| riboflavin biosynthesis protein RibD [Eubacterium sp. AS15]
Length = 367
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 186/379 (49%), Gaps = 32/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A G TSP+P G +I ++ G+G+ G AEV A+
Sbjct: 6 DEKYMKLAIDLAKNGIGKTSPNPIVGAVIVKDD-EIIGKGWHEKYGEAHAEVNALANCKI 64
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
AT Y+ +EP CH S +++AGI+ VV+G +P + G+ + L+ G+
Sbjct: 65 SPSNATMYVTLEPC-CHFGKQPPCTSKIIEAGISHVVIGSFDPNPQVSGKGSQILKESGI 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V QS + ++ C +N H + P+ + KYAMT D
Sbjct: 124 KV------TQSVL----QRECDELNTVFFHYIKTNRPYVILKYAMTAD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ +R++V R R A++VG TV +DNP L R GH P+R++
Sbjct: 162 GKIATYTGESKWITGDKAREQVHRDRNRYSAIMVGVGTVLKDNPMLNCRIENGHNPLRVI 221
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P +N+ S+ PT++ T ++++Y A G ++++ + ++ ++
Sbjct: 222 CDTKLRTPFTSNVVKTASEIPTLIATASEDNARWRQYEA-YGCKLIKIPKDGESIDLVEL 280
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ + S++ E G L S + + L++KV ++ K+ GG NA TP++ G+ +
Sbjct: 281 IKALGENKIDSVIVEGGAKLNWSILKASLMNKVQVYIGAKLFGGANAKTPIAGDGLAFPN 340
Query: 398 QALDLIDICYEQVGPDMLI 416
+++ + Q D L+
Sbjct: 341 ESVSMKLSSISQFDEDCLL 359
>gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Streptococcus pneumoniae TCH8431/19A]
gi|417311768|ref|ZP_12098485.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04375]
gi|418082087|ref|ZP_12719289.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44288]
gi|418084277|ref|ZP_12721465.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47281]
gi|418093035|ref|ZP_12730166.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49138]
gi|418099765|ref|ZP_12736854.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7286-06]
gi|418118125|ref|ZP_12755086.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA18523]
gi|418140797|ref|ZP_12777612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13455]
gi|418149759|ref|ZP_12786515.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14798]
gi|418151936|ref|ZP_12788676.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16121]
gi|418156411|ref|ZP_12793130.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16833]
gi|418163530|ref|ZP_12800206.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17371]
gi|418194985|ref|ZP_12831466.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47688]
gi|418197101|ref|ZP_12833567.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47778]
gi|419424248|ref|ZP_13964451.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7533-05]
gi|419426382|ref|ZP_13966566.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
5652-06]
gi|419428455|ref|ZP_13968626.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11856]
gi|419437916|ref|ZP_13977986.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13499]
gi|419443833|ref|ZP_13983848.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19923]
gi|419445942|ref|ZP_13985948.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7879-04]
gi|419448101|ref|ZP_13988099.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
4075-00]
gi|419450195|ref|ZP_13990184.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP02]
gi|419500946|ref|ZP_14040633.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47628]
gi|419518010|ref|ZP_14057620.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA08825]
gi|419527201|ref|ZP_14066748.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17719]
gi|421286709|ref|ZP_15737476.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA58771]
gi|421288839|ref|ZP_15739591.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA54354]
gi|421304155|ref|ZP_15754813.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA62331]
gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Streptococcus pneumoniae TCH8431/19A]
gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04375]
gi|353757524|gb|EHD38117.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44288]
gi|353760580|gb|EHD41156.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47281]
gi|353767388|gb|EHD47922.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49138]
gi|353773764|gb|EHD54259.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7286-06]
gi|353792974|gb|EHD73344.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA18523]
gi|353808316|gb|EHD88583.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13455]
gi|353817901|gb|EHD98101.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14798]
gi|353818581|gb|EHD98779.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16121]
gi|353825688|gb|EHE05852.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16833]
gi|353832956|gb|EHE13068.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17371]
gi|353863104|gb|EHE43033.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47688]
gi|353865638|gb|EHE45545.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47778]
gi|379537921|gb|EHZ03102.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13499]
gi|379553706|gb|EHZ18789.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11856]
gi|379568364|gb|EHZ33344.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17719]
gi|379571526|gb|EHZ36483.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19923]
gi|379603191|gb|EHZ67960.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47628]
gi|379615400|gb|EHZ80106.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7879-04]
gi|379619342|gb|EHZ84014.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
5652-06]
gi|379621052|gb|EHZ85701.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
7533-05]
gi|379624913|gb|EHZ89541.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
4075-00]
gi|379625340|gb|EHZ89967.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP02]
gi|379642223|gb|EIA06755.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA08825]
gi|395890099|gb|EJH01105.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA54354]
gi|395890968|gb|EJH01971.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA58771]
gi|395906546|gb|EJH17444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA62331]
Length = 366
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAMT+D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMTID------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica
T6c]
gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas atlantica T6c]
Length = 372
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 195/400 (48%), Gaps = 51/400 (12%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
+FS A DA + A +A+K TSP+PN GC+I + G + G+G+ GT AE+
Sbjct: 1 MTQFS-ALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEI 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVR 155
A+ G +GATAY+ +EP + HG S AL+ AG+ RVV + +P + G ++
Sbjct: 60 HAIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+QV S ++E K+ +N I R + P+ K A +LD
Sbjct: 120 KLSDAGVQV-------SSGLLESEAKA---LNRGFIKRMQTGKPWVTVKLASSLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-- 273
GK A ++G + WI+ +R+ V R +S A++ G TV DNP L R+
Sbjct: 165 -------GKTALNNGESQWITGPLAREDVQRHRAQSCAILSGSGTVLADNPSLNVRYSEL 217
Query: 274 ----------GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYL 319
P+R++L + + +L+ +S +P +++ + +F ++Y
Sbjct: 218 GFARNALAEVNLRQPVRVLLDGRNQMRPDLHLFALS-SPIVIINSQPNTAEFPDHVEQYQ 276
Query: 320 A-SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
A S G + L+ +DVM++ RG+ I E G LA + + + LI ++ + APK+
Sbjct: 277 AQSNGAQ------LDLQDVMKHLGQRGFNHIWVEAGAKLAGALLQNKLIDELILYQAPKL 330
Query: 379 IGGKNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
+G K V EL +M QA +L QVGPD+ ++
Sbjct: 331 LGDKGRDLFAVDEL--TQMQQAFELQWQDVRQVGPDLKLT 368
>gi|340755162|ref|ZP_08691864.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. D12]
gi|419841858|ref|ZP_14365220.1| riboflavin biosynthesis protein RibD [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|421501068|ref|ZP_15948045.1| riboflavin biosynthesis protein RibD [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313686174|gb|EFS23009.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. D12]
gi|386903895|gb|EIJ68696.1| riboflavin biosynthesis protein RibD [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|402266508|gb|EJU15936.1| riboflavin biosynthesis protein RibD [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 359
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 184/376 (48%), Gaps = 31/376 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y+ A +A K G +P+P G ++ + G + G+GY + G AEV A++ G
Sbjct: 2 EAQEYMHFALKLAKKGEGKVNPNPLVGAVVVKN-GNIIGQGYHHQYGGPHAEVYALQEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+ + AT Y+ +EP +G ++ +GI R ++ + +P + G+ + ++ G+
Sbjct: 61 TEAKDATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGI 120
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
QV V L E EAR ++N + +++ PF K +TLD
Sbjct: 121 QVEVGLCET-------EAR----VLNRVFLKYISTKTPFLFLKCGITLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK+A S + WI+++T+R+RV LR + ++VG +TV DNP L AR G P RI
Sbjct: 159 -GKLATRSFQSKWITNETARERVQYLRNKYMGIMVGIHTVIEDNPSLDARIENGRDPYRI 217
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVT----QRGARRKFQKYLASRGVEVVEFDILNSRDV 337
++ L +P + L D I++T + +RK + L R + + E I + ++
Sbjct: 218 IVDPYLEIPLSSKLLHKKDKKVIIITSLSEKETDKRKELEKLELRFIFLKE-RIFSFSNM 276
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+E G S+L E GG L ++A +I F+APKI+G + A + +S M
Sbjct: 277 LEEIGKLGVDSVLLEGGGQLISAAFQENVIDGGEIFIAPKILGDEKAVSFISGFCKESME 336
Query: 398 QALDLIDICYEQVGPD 413
+A+ L ++ Q G +
Sbjct: 337 EAISLPNVKVHQYGNN 352
>gi|402301429|ref|ZP_10820776.1| riboflavin specific deaminase [Bacillus alcalophilus ATCC 27647]
gi|401723477|gb|EJS96950.1| riboflavin specific deaminase [Bacillus alcalophilus ATCC 27647]
Length = 361
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 27/380 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A+K+ G TSP+P G ++ G+V G G +G AEV A++ G
Sbjct: 5 DQEYMELAIRLAEKTEGQTSPNPVVGAVVVKD-GQVVGFGAHLKRGEGHAEVLALQMAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIR-NPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP +G + L+ + VV +P + G + L+ G++
Sbjct: 64 KADGATVYVTLEPCSHYGKTPPCANLLVEKKVKRVVVATVDPNPQVSGTGIARLKEAGIE 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V I E+ + +N + ++ P+ K AMTLD G
Sbjct: 124 VTV-------GICEQ---EAIQLNEVFFYYILTKQPYVTLKAAMTLD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
KIA +G + WI+S+ +R V R + DA++VG TV DNP LT R GG P+RIV
Sbjct: 162 KIATVTGESKWITSEEARADVHQYRHKHDAILVGIGTVLADNPTLTTRLESGGKNPIRIV 221
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342
L + L +P ++ L APT V T A + K L S GVEV + + V+
Sbjct: 222 LDRKLRIPLDSKLVTDGLAPTWVFTNSEAPLEKVKKLESVGVEVYQIGT-DLNHVLRTLG 280
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
+ S+ E G + I L+ +V + APK++ G+ APT G+ ++ L L
Sbjct: 281 QQEITSLFVEGGSQIHGQFIEKKLVQQVITYFAPKMLAGEMAPTFSGGNGIKSLANHLRL 340
Query: 403 IDICYEQVGPDM-LISGFLQ 421
+ +Q+GPD+ +IS L+
Sbjct: 341 EFVTVKQLGPDIKIISKVLE 360
>gi|408676760|ref|YP_006876587.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Streptomyces venezuelae ATCC 10712]
gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Streptomyces venezuelae ATCC 10712]
Length = 417
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 190/384 (49%), Gaps = 41/384 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +RRA ++A + G TSP+P GC++ ++G+ GEG+ G AEV A+ G+
Sbjct: 66 DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RG TAY+ +EP + G AL++AGI+RVV + +P G A LR+ G+
Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNPQATGGA-DTLRAAGV- 183
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D++ ++E+ ++ L + R PF +KYA TLD G
Sbjct: 184 ------DVRQGLLEDEAEAVNLAWLTSVRRGR---PFVRWKYAATLD------------G 222
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
+IAA+ G + WI+S SR V LR +DAVVVG T R D+P L R P+R+V
Sbjct: 223 RIAAADGTSRWITSAESRADVHRLRAEADAVVVGSGTARTDDPHLAVRGIDAAVQPLRVV 282
Query: 283 L-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYL----ASRGVEVVEFDILNSRDV 337
+ T+ + A + D APT++ A + A RG+ V
Sbjct: 283 VDTEATAVKAGARVLD-DAAPTLIAVAEDADTALTDVVRLPRAERGLSVPAL-------- 333
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
++ H RG S+L E G TLA + +++G + +V ++AP ++G P ++ G+ ++
Sbjct: 334 LDALHARGVRSVLLEGGPTLAGAFVAAGAVDQVVGYLAPVLLGA--GPNALAGAGISTIT 391
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
AL L +VG D+ I+ L+
Sbjct: 392 DALRLDITETVRVGTDLRITATLK 415
>gi|452856085|ref|YP_007497768.1| Riboflavin biosynthesis protein
RibD/Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080345|emb|CCP22107.1| Riboflavin biosynthesis protein
RibD/Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 371
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 180/376 (47%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAIHMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVMEYFHD 343
L +PE AN+ APT + T +GA + L + G++V+ E D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKGADVQKTDRLTALGIKVIPLETDRIHVPEVLGILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
AHT2]
gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
AHT2]
Length = 368
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 198/391 (50%), Gaps = 37/391 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D AY++ A ++A K G TSP+P G ++ G+V G G+ G AE+ A+ A
Sbjct: 4 ATDQAYMKMALELARKGVGKTSPNPCVGAVL-VKDGQVVGRGWHRRAGEPHAEINALAAA 62
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVSALVQA-GITRVVVGIRNPLQHLRGQAVRALRSQG 161
G GAT Y+ +EP + G S ++A GI RVV G+ +P + G L +G
Sbjct: 63 GDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDP-NPVAGGGGAYLAGRG 121
Query: 162 LQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
L+V VL +D C +N P R T+ P+ K A++LD
Sbjct: 122 LEVLAGVLADD------------CRRLNLPFSKRVTTGYPWVQLKAAVSLD--------- 160
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTP 278
G+IAA++G + WI+ + +R +V LR SDA++VG TV D+P LT R G G P
Sbjct: 161 ---GRIAAATGRSKWITGEQARRQVHRLRCLSDAILVGSGTVLADDPSLTTRLPGKGRDP 217
Query: 279 MRIVLTQTLNLPEEAN-LWDVSDAPTIVVTQRGARRKFQKYLASRGVEV----VEFD-IL 332
+R++L L P A + S A T + A ++ L GVEV +E D L
Sbjct: 218 LRVILDSKLATPPAAKVVAHDSAAATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTL 277
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+V+E+ G ++L E GG + S + GL +V F+AP ++GG + VSELG
Sbjct: 278 RLVEVLEHLGRAGVTTLLVEGGGRVHGSFLRRGLADEVIFFIAPLLLGG-DGMAAVSELG 336
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
+ + SQA L +I + G D++I G L+P+
Sbjct: 337 LADPSQAPRLHEIERRRCGDDLMIRGRLRPL 367
>gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384198414|ref|YP_005584157.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 366
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 182/380 (47%), Gaps = 33/380 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+DA Y+ A ++A + AG+ +P+P G +I ++ G+GY G AE A+
Sbjct: 2 DDAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDD-RIIGQGYHEMFGGLHAERNALRHCT 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
GAT Y+ +EP CH T A+V++GI RVVVG + + G+ VR L G
Sbjct: 61 QSPAGATLYVTLEPC-CHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V ++ + + + V + I T+ P+ + KYAMT+D
Sbjct: 120 IRVDV-------GVLADECRHLIRVFSKYI---TTHTPYVIMKYAMTMD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA + + WIS + SR RV LR AV+VG NTV D+P LT R G P+R+
Sbjct: 159 -GKIATHTNQSRWISGEESRRRVHQLRRSVAAVMVGVNTVIEDDPLLTCRMAHGRNPVRV 217
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRD 336
V L P + + + D T + T RK + Y G E++ D ++ D
Sbjct: 218 VCDTRLRTPLTSRIVQTANDVRTYIATACDDERKAEDY-RRHGCEILAVGRKGDHVDLAD 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ D S+L E G + SA+ ++ + ++APKI GG A +PV G+
Sbjct: 277 VVRRLGDMQMDSVLLEGGSAMNWSALEQRIVDEAHVYIAPKIFGG-TAKSPVGGQGVALP 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
S A+ L +VG D L+
Sbjct: 336 SDAVMLRPRACSRVGEDYLV 355
>gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
Length = 369
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 179/374 (47%), Gaps = 35/374 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G +I GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKD-GKIIGEGWHKKFGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G +GAT Y+ +EP G + +++AGI R VV +P + G+ ++ +
Sbjct: 60 NEAGENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIE 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+ G++V LG ++E+ K VN + +++P+ K +TLD
Sbjct: 120 NAGIEVE-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR---HGGG 275
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R G
Sbjct: 162 ----GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSG 217
Query: 276 ---HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P R+V+ L P EA + +D I++T + K +KY L +R + +E
Sbjct: 218 IEKRNPFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNKGLEKIEKYKNLGTRFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I D+++ S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMEDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDL 402
+ M + L
Sbjct: 337 NGFNFDNMEEVFKL 350
>gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
Length = 302
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 156/316 (49%), Gaps = 27/316 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E Y++ A + A G T+P+P G +I ++ G G G AE+ A+ G
Sbjct: 3 EHELYMKLALENAKAMKGQTTPNPLVGSVIVNDN-RIVGVGAHMKAGEPHAEIHAIRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGAT Y+ +EP HG A+VQAGI +VVV +P + G+ ++ L+ G+
Sbjct: 62 EQVRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + +SK + E +L ++ PF K +TLD
Sbjct: 122 EVLVGVCEEESKKMNEVFNKYIL----------TKRPFVTIKSGVTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA SS + WI+S +R V +R + A++VG NTV++DNP LT R G P+RI+
Sbjct: 160 GKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRII 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD---ILNSRDVME 339
L TL +P EAN+ +APT + T K + L + GV+V +N ++++
Sbjct: 220 LDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLD 279
Query: 340 YFHDRGYLSILWECGG 355
+G S+L E GG
Sbjct: 280 VLGQKGVSSLLVEGGG 295
>gi|357414586|ref|YP_004926322.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus
ATCC 33331]
gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus
ATCC 33331]
Length = 366
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 184/389 (47%), Gaps = 38/389 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A + A +RRA +A + G TSP+P GC+I + G AGEG+ G AEV A+ A
Sbjct: 4 AAETAAMRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAA 63
Query: 103 GSFCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G RG TA + +EP C +HT AL++AG+ RVV + +P G A L
Sbjct: 64 GERARGGTAIVTLEP--C--NHTGRTGPCAQALIEAGVRRVVYAVSDPNPQATGGA-DTL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R GL+V Q + +EA N + P+ ++KYA TLD
Sbjct: 119 RGAGLEVA------QGLLADEAEAG----NTAWLTSVRLGRPYVLWKYAATLD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGH 276
G+IAA+ + WI+S +R V LR +DAVVVG T R D+P+L R G
Sbjct: 162 -----GRIAAADATSRWITSPEARADVHRLRAEADAVVVGSGTARADDPQLGVRGIEGAV 216
Query: 277 TPMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+V+ T + A + D S + V + R L+
Sbjct: 217 QPLRVVVDTGATAVRPGARVLDGSAPSLVAVADDAEAGHLPEEAVLRLPRAATGPGLDID 276
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ H RG S+L E G LA S +++G + V ++AP ++G P +++ G+
Sbjct: 277 ALLAALHARGVRSVLLEGGPVLAGSFVAAGAVDTVVGYLAPVLLGA--GPAALADAGIST 334
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQPIP 424
+SQAL L ++GPD+ I+ P+P
Sbjct: 335 ISQALRLDVTETVRIGPDLRITAV--PVP 361
>gi|452976734|gb|EME76549.1| riboflavin biosynthesis protein RibD [Bacillus sonorensis L12]
Length = 362
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 189/385 (49%), Gaps = 29/385 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A + G T +P G ++ G+V G G G AEV A++ G
Sbjct: 3 DEHYMNLALGLAKQGEGQTGANPLVGAVVVKD-GQVVGMGAHLKYGEAHAEVHAIQMAGR 61
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G + LV ++G+ RVVV +P + G+ + L+ G++
Sbjct: 62 HAEGAEIYVTLEPCSHYGKTPPCAELVIRSGLKRVVVAAEDPNPLVSGRGIGMLKEAGIE 121
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V S +++E + +N +H + +P+ K A++LD G
Sbjct: 122 V-------TSGVLKEQAEE---LNEKFMHFMRTGLPYVTLKAAVSLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIV 282
K A ++G + WI+S+ +R R +++VG T++ D+P LT R G + P+R++
Sbjct: 160 KTATTTGDSKWITSEEARMDAHKYRRNHQSILVGVGTIKADDPSLTCRLPGTANQPVRVI 219
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEY 340
L L +P A + ++APT + T A +YL +GV+V D ++ + V+++
Sbjct: 220 LDTNLTIPLHAKVIHDNEAPTWIYTTSKADPDTIRYLEDKGVQVNVLDSGSISVKAVLQH 279
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
G S+ E G T+ AS ++ GL ++ ++APK+IGG ++P+ +S G M
Sbjct: 280 LAANGITSVYVEGGSTIHASFVNEGLYQQIIFYLAPKLIGGLHSPSAISGEGFQSMKDVP 339
Query: 401 DLIDICYEQVGPDMLISGFLQPIPD 425
L ++G D+ ++ +PI +
Sbjct: 340 LLQFTTISKIGRDLKLAA--KPIKE 362
>gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus 1942]
gi|419820513|ref|ZP_14344123.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus C89]
gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus 1942]
gi|388475329|gb|EIM12042.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus C89]
Length = 363
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 185/380 (48%), Gaps = 27/380 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A++ G +
Sbjct: 5 YMNTALELAKQGEGQTGSNPLVGAVVVKN-GEIVGMGAHLKYGEAHAEVHAIKMAGKHVK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
A Y+ +EP +G + L+ +GI RV V +R+P + G+ + +++ G++V
Sbjct: 64 DADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIEVK- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A K +N +H + +P+ K A +LD GK A
Sbjct: 123 -----EGILTDQAEK----LNEKFLHYMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNTVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
+L +PEEA + APT + T A + +K L+ GV++ +E ++ DV++ +
Sbjct: 222 SLTIPEEAKVILDQAAPTWIFTTSQADAEKKKRLSDFGVKIFTLENGHIHIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G + S + G ++ ++APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGAAVHGSFVKEGCYQEIIFYIAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 404 DICYEQVGPDMLISGFLQPI 423
+G D+ + +P+
Sbjct: 342 FTAITHIGQDIKLEAKPKPV 361
>gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola sp. 4H-3-7+YE-5]
gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola sp. 4H-3-7+YE-5]
Length = 372
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 51/403 (12%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
+FS A DA + A +A+K TSP+PN GC++ G + G+G+ GT AE+
Sbjct: 1 MTQFS-ALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEI 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVR 155
A+ G +GATAY+ +EP + HG S AL++AG++RVV + +P + G ++
Sbjct: 60 HAIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+ V S ++E K+ +N I R + +P+ K A +LD
Sbjct: 120 KLSDAGVAV-------SSGLLEREAKA---LNLGFIKRMKTGMPWVTVKLASSLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-- 273
GK A ++G + WI+ +R+ V R +S A++ G TV DNP L R+
Sbjct: 165 -------GKTALNNGESQWITGPLAREDVQRHRAKSCAILSGSGTVLADNPSLNVRYSEL 217
Query: 274 ----------GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYL 319
P RI+L + + +L+ +S +P +++ + F ++Y
Sbjct: 218 GFAKSELTEESLRQPGRILLDGRNQMRPDLHLFSLS-SPIVIINSQPNTADFPAHVEQYQ 276
Query: 320 A-SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
A S G + L+ DVM++ RG+ I E G LA + + + LI ++ + APK+
Sbjct: 277 ALSNGAQ------LDLHDVMKHLGQRGFNQIWVEAGAKLAGALLQNKLIDELILYQAPKL 330
Query: 379 IGGKNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
+G K V EL +M QA +L QVGPD+ ++ L
Sbjct: 331 LGDKGRDLFAVDEL--TQMQQAFELQWQDVRQVGPDLKLTARL 371
>gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 371
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 185/370 (50%), Gaps = 42/370 (11%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---G 103
+Y++ A D+A G T P+P G +I GK+ G+GY G AE +A++ G
Sbjct: 9 SYMKIALDLAKIRKGLTHPNPTVGAVIVKD-GKIIGKGYHTKAGMPHAEREAIKDAKEKG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRS 159
+G+T ++ +EP CH T +A+++ GI+ +V+G+ +NP+ ++GQ V L+S
Sbjct: 68 YDLKGSTMFVTLEPC-CHYGRTPPCTNAIIEEGISEIVIGVLDQNPV--VKGQGVNILKS 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V I K C +N + PF K A + D
Sbjct: 125 HGIKV----------ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTP 278
GKIA +G + WI+S+ SR LR + A++VG NT +DNP LT RH P
Sbjct: 166 ---GKIATKTGDSKWITSEKSRQFAHQLRKEASAILVGTNTALKDNPALTVRHVETEKQP 222
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDILNSR-- 335
+RI++ + L +P N+++ ++A TIV+T + A ++ K L+ + VE+V D+ +
Sbjct: 223 VRILIDKRLKVPPTYNIYN-NEAKTIVITSKLASQENLKRLSEKENVEIVFLDLDENENF 281
Query: 336 ---DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
D+++ + R + +L E G + I K+ F AP +IG + + + LG
Sbjct: 282 KIDDILKTLYAREIVHLLVEGGRGVITDLIKERKFDKISIFTAPILIGD-DGISWLGYLG 340
Query: 393 MVEMSQALDL 402
+ ++ +L L
Sbjct: 341 IEKIQDSLKL 350
>gi|443634946|ref|ZP_21119118.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443345371|gb|ELS59436.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 361
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 182/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ GS
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAINMAGSHAM 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + + G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEEAGIEVK- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A K +N +H + +P+ K A +LD GK A
Sbjct: 123 -----EGILADQAEK----LNEKFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVIADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 ALSIPEDAQVICDQAAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGLHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|384129051|ref|YP_005511664.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
TK-6]
gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
TK-6]
Length = 361
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 165/341 (48%), Gaps = 30/341 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R D ++RRA ++A G T P+P GC+I GK+ EGY G AE A+E
Sbjct: 3 RETDHHFMRRALELAKLRKGLTHPNPTVGCVIVKD-GKIIAEGYHEKVGMPHAEAVALEK 61
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G+ G+T Y+ +EP +G A+++A + RVV+ +P + G+ V+ LR
Sbjct: 62 AGTQAEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V V + +EAR+ +N T + P+ K A ++D
Sbjct: 122 GIDVCV------GVLEDEARE----LNEDFFTYITQKRPYITLKLAQSID---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT-PM 279
G+IA G + WI+++ SR LR ++ AV+VG NTV RD+P LT RH + P+
Sbjct: 162 --GRIATKHGESQWITNQESRTFAHRLRAQATAVLVGINTVLRDDPSLTVRHIPWESQPI 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
R+VL L +P + L A T+++T R K K L G++V+ E L R
Sbjct: 220 RVVLDPNLRIPITSKLVREKTAKTLIITASENREKM-KILEDEGIKVLLAPAEEGKLILR 278
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAP 376
+V+ + + +L E G S I L ++F F+AP
Sbjct: 279 EVLRELYFMEIMHLLVEGGAQTITSFIKEDLYDRLFIFLAP 319
>gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
longum JDM301]
gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
longum JDM301]
Length = 366
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 182/380 (47%), Gaps = 33/380 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+DA Y+ A ++A + AG+ +P+P G +I ++ G+GY G AE A+
Sbjct: 2 DDARYMGLAIELAKRGAGYVNPNPMVGAVIVKDD-RIIGQGYHEMFGGLHAERNALRHCT 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
GAT Y+ +EP CH T A+V++GI RVVVG + + G+ VR L G
Sbjct: 61 QSPAGATLYVTLEPC-CHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V V ++ + + + V + I T+ P+ + KYAMT+D
Sbjct: 120 IRVDV-------GVLADECRHLIRVFSKYI---TTHTPYVIMKYAMTMD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA + + WIS + SR RV LR AV+VG NTV D+P LT R G P+R+
Sbjct: 159 -GKIATHTNQSRWISGEESRRRVHQLRRSVAAVMVGVNTVIEDDPLLTCRMAHGRNPVRV 217
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRD 336
V L P + + + D T + T RK + Y G E++ D ++ D
Sbjct: 218 VCDTRLRTPLTSRIVQTANDVRTYIATACDDERKAEDY-RRHGCEILAVGRKGDHVDLAD 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ D S+L E G + SA+ ++ + ++APKI GG A +PV G+
Sbjct: 277 VVRRLGDMQMDSVLLEGGSAMNWSALEQRIVDEAHVYIAPKIFGG-TAKSPVGGQGVALP 335
Query: 397 SQALDLIDICYEQVGPDMLI 416
S A+ L +VG D L+
Sbjct: 336 SDAVMLRPRACSRVGEDYLV 355
>gi|427719370|ref|YP_007067364.1| hypothetical protein Cal7507_4150 [Calothrix sp. PCC 7507]
gi|427351806|gb|AFY34530.1| hypothetical protein Cal7507_4150 [Calothrix sp. PCC 7507]
Length = 166
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 94/153 (61%), Gaps = 11/153 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPH IQ+ WS+VEHYYQA KF G D + I
Sbjct: 3 IYFYKAWQPYGCFSNFSPHGIQIQGT----YWSTVEHYYQAQKFVGSIDAV---IIPLIH 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A++PEEAA LGR RQ +RSDW VK ++M A+ KF + + +LLSTG +
Sbjct: 56 AAQTPEEAAALGRCTTRQ----LRSDWNVVKTEVMREAVLKKFVTHGEIREILLSTGNQI 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
LVE SP D FWG G + G NYLG +LM +R+E
Sbjct: 112 LVENSPIDYFWGCGADKTGQNYLGNILMSVRAE 144
>gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
gi|418120300|ref|ZP_12757248.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44194]
gi|419441620|ref|ZP_13981655.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13224]
gi|419490169|ref|ZP_14029911.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47179]
gi|421274154|ref|ZP_15724988.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA52612]
gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
gi|353794855|gb|EHD75207.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44194]
gi|379555116|gb|EHZ20185.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13224]
gi|379596449|gb|EHZ61253.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47179]
gi|395875989|gb|EJG87066.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA52612]
Length = 366
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + +D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|440681523|ref|YP_007156318.1| hypothetical protein Anacy_1920 [Anabaena cylindrica PCC 7122]
gi|428678642|gb|AFZ57408.1| hypothetical protein Anacy_1920 [Anabaena cylindrica PCC 7122]
Length = 157
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 96/154 (62%), Gaps = 11/154 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPHPI +V G W +VEHYYQA KF G D + + I
Sbjct: 3 IYFYKVWQPYGCFSNFSPHPI---EVQGS-HWPTVEHYYQAQKFVGSTD---EVIIPLIH 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
+ +PEEAA LGR R+ +R DWE VKI++M A++ KF+ +P + +LL TG +
Sbjct: 56 ASATPEEAAALGRCSTRK----LRPDWEIVKIEVMRSAVRKKFTTHPEIRKVLLVTGDEI 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
LVE SP D FWG G G N+LG +LM +R E
Sbjct: 112 LVENSPTDYFWGCGANKTGQNHLGIILMSVREEI 145
>gi|387756745|ref|YP_006063724.1| riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Streptococcus pneumoniae OXC141]
gi|418231328|ref|ZP_12857917.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA07228]
gi|418235622|ref|ZP_12862191.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19690]
gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae OXC141]
gi|353888994|gb|EHE68766.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA07228]
gi|353893551|gb|EHE73296.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19690]
gi|429318721|emb|CCP31924.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae SPN034183]
gi|429320534|emb|CCP33897.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae SPN994039]
gi|429322354|emb|CCP29938.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae SPN994038]
Length = 366
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + +D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLSN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera
pallida ATCC 43644]
gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera
pallida ATCC 43644]
Length = 387
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 187/394 (47%), Gaps = 57/394 (14%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA--GGSFC 106
+R A +A++ G P+P G LI G+V G G+ G AEV+A+ + +
Sbjct: 1 MRLALALAERGRGHVEPNPMVGALIVRG-GEVVGRGWHRRFGGPHAEVEALRSLSDPALA 59
Query: 107 RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
RGAT ++ +EP CH T A+++AGITRVV + +P + G + ALR+ G++V
Sbjct: 60 RGATLFVTLEPC-CHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEV 118
Query: 165 -HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
H L E ++ NA + + P+ K+AMTLD G
Sbjct: 119 CHGLEETAARRL-----------NAAYLKQVLIGRPYVTAKWAMTLD------------G 155
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
K AA++G + WIS++ SR RV +LRGR DA+VVG T D+P LT R G TP RIVL
Sbjct: 156 KTAAATGDSRWISNERSRARVHELRGRMDAIVVGIGTALADDPLLTVRPPGPRTPTRIVL 215
Query: 284 TQTLNLP---------EEANLWDV--SDAPT--IVVTQRGARRKFQKYLA------SRGV 324
LP ++A LW V DAP + +R + F + + GV
Sbjct: 216 DSQARLPLSSRLVRTIDQAPLWLVHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGV 275
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
+V ++ G +L E GG +A + +G I + F+AP++IGG
Sbjct: 276 PIVPL--------LDELGREGMTHLLVEGGGRVAGAFFDAGAIDALEVFIAPRVIGGTAR 327
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
P+ G M+QA I+ E + D+ + G
Sbjct: 328 FAPLLGQGRPLMAQAARFIESRLEILDGDLRLVG 361
>gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP18-BS74]
gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1873-00]
gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
P1031]
gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
670-6B]
gi|342162985|ref|YP_004767624.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae IS7493]
gi|383938893|ref|ZP_09992090.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae SK674]
gi|410475684|ref|YP_006742443.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
gamPNI0373]
gi|417675964|ref|ZP_12325377.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17545]
gi|417695343|ref|ZP_12344523.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47368]
gi|418087983|ref|ZP_12725148.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47033]
gi|418090809|ref|ZP_12727954.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44452]
gi|418095276|ref|ZP_12732392.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16531]
gi|418108418|ref|ZP_12745453.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41410]
gi|418109149|ref|ZP_12746178.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49447]
gi|418154235|ref|ZP_12790966.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16242]
gi|418161236|ref|ZP_12797927.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17328]
gi|418168276|ref|ZP_12804922.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19077]
gi|418175000|ref|ZP_12811598.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41437]
gi|418199176|ref|ZP_12835625.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47976]
gi|418201495|ref|ZP_12837927.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA52306]
gi|418217933|ref|ZP_12844602.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP127]
gi|418220124|ref|ZP_12846781.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47751]
gi|418224638|ref|ZP_12851268.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP112]
gi|418237775|ref|ZP_12864332.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418969229|ref|ZP_13520367.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|419422425|ref|ZP_13962644.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43264]
gi|419461320|ref|ZP_14001238.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02714]
gi|419488400|ref|ZP_14028153.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44386]
gi|419522474|ref|ZP_14062057.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13723]
gi|419524954|ref|ZP_14064520.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14373]
gi|421271834|ref|ZP_15722681.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR55]
gi|421284423|ref|ZP_15735201.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60190]
gi|421306391|ref|ZP_15757038.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60132]
gi|444386715|ref|ZP_21184742.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS125219]
gi|444394951|ref|ZP_21192499.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0002]
gi|444396654|ref|ZP_21194141.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0006]
gi|444399490|ref|ZP_21196953.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0007]
gi|444401679|ref|ZP_21198862.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0008]
gi|444407023|ref|ZP_21203690.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0010]
gi|444413616|ref|ZP_21209931.1| riboflavin biosynthesis protein RibD family protein [Streptococcus
pneumoniae PNI0153]
gi|444416233|ref|ZP_21212424.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0199]
gi|444420642|ref|ZP_21216412.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0427]
gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP18-BS74]
gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1873-00]
gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
P1031]
gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
670-6B]
gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17545]
gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47368]
gi|341932867|gb|AEL09764.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae IS7493]
gi|353755660|gb|EHD36263.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47033]
gi|353766182|gb|EHD46722.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44452]
gi|353772056|gb|EHD52562.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16531]
gi|353776945|gb|EHD57419.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41410]
gi|353784442|gb|EHD64862.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49447]
gi|353822527|gb|EHE02702.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA16242]
gi|353830826|gb|EHE10955.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17328]
gi|353836195|gb|EHE16283.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19077]
gi|353843560|gb|EHE23604.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41437]
gi|353866764|gb|EHE46660.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47976]
gi|353868971|gb|EHE48854.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA52306]
gi|353877074|gb|EHE56918.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP127]
gi|353877921|gb|EHE57760.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47751]
gi|353883282|gb|EHE63090.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP112]
gi|353894908|gb|EHE74648.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379535356|gb|EHZ00560.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02714]
gi|379560095|gb|EHZ25121.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13723]
gi|379560658|gb|EHZ25680.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14373]
gi|379589756|gb|EHZ54595.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43264]
gi|379590515|gb|EHZ55353.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44386]
gi|383352313|gb|EID30029.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383714234|gb|EID70243.1| riboflavin biosynthesis protein RibD [Streptococcus
pseudopneumoniae SK674]
gi|395877393|gb|EJG88462.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR55]
gi|395888343|gb|EJG99354.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60190]
gi|395910101|gb|EJH20975.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60132]
gi|406368629|gb|AFS42319.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
gamPNI0373]
gi|444254466|gb|ELU60899.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS125219]
gi|444258920|gb|ELU65237.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0002]
gi|444261885|gb|ELU68183.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0006]
gi|444267780|gb|ELU73669.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0008]
gi|444268665|gb|ELU74506.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0007]
gi|444270619|gb|ELU76370.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0010]
gi|444272787|gb|ELU78474.1| riboflavin biosynthesis protein RibD family protein [Streptococcus
pneumoniae PNI0153]
gi|444277870|gb|ELU83362.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0199]
gi|444284132|gb|ELU89294.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0427]
Length = 366
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|336419106|ref|ZP_08599373.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 11_3_2]
gi|336164111|gb|EGN67023.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 11_3_2]
Length = 369
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 175/374 (46%), Gaps = 35/374 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDEKYMTRAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ +
Sbjct: 60 NEAGENAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIE 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V LG ++E+ K VN + +++P+ K +TLD
Sbjct: 120 DAGIEVK-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----- 273
GKIA SG + WI+++ R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ----GKIATRSGKSKWITNEIVREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFG 217
Query: 274 -GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P R+V+ L P EA + +D I++T R K ++Y L +R + +E
Sbjct: 218 IEKRNPFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNRELEKIKEYKNLGTRFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I +D+++ S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMKDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAAEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDL 402
+ M L
Sbjct: 337 NGFNFDNMEDVFKL 350
>gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP6-BS73]
gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP6-BS73]
Length = 366
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
Length = 369
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 181/383 (47%), Gaps = 33/383 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
+++ A D A+ GF +P+P G +I GK+ G+ G+ AE A G
Sbjct: 6 FMQAALDSAENGMGFVNPNPMVGAVIVRD-GKIIASGFHERYGSLHAERSAFAQCNKKGI 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALVQA-GITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
C GA Y+ +EP HG + + A GI V +G +P + G+ LRS+G+
Sbjct: 65 NCAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGIG 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V +++E C +N T+ +PF KYAMTLD G
Sbjct: 125 V-------TEGVLKE---KCDKLNEIFFKFITTGLPFVTLKYAMTLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
K A +G + WI+ +T+R V R R A++ G TV D+P LT R G P+R++
Sbjct: 163 KTACYTGESKWITGETARRHVHRERLRHAAIMAGIGTVLADDPLLTCRIENGRDPLRMIC 222
Query: 284 TQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVM 338
L +P ++N+ ++ PT++V +K L + G ++V N +M
Sbjct: 223 DTHLRIPLDSNIVRTAEKVPTMIVCGEEDAQK-ADALKNAGCQIVCLPNGNGGTDLSALM 281
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ ++ S+L E GGTLA SA+ ++ KV A+ APKI GGK+ TPV G ++
Sbjct: 282 KMLGEKKIDSVLIEGGGTLAWSALECSIVDKVMAYTAPKIFGGKSPFTPVGGKGAKSPAK 341
Query: 399 ALDLIDICYEQVGPDMLISGFLQ 421
A L D + D+LI G ++
Sbjct: 342 AFMLEDTTVTALDGDILIEGRVK 364
>gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Koribacter versatilis Ellin345]
gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Koribacter versatilis Ellin345]
Length = 399
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 189/413 (45%), Gaps = 48/413 (11%)
Query: 34 APVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKP 93
AP + + D + RA ++A K SP+P G ++ + G+V GEG+ G K
Sbjct: 5 APRMISINASPDERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKH 64
Query: 94 AEVQAVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQ 152
AEV A+E G+ RGAT YLN+EP G A++ AGI RVV + +P + G+
Sbjct: 65 AEVLALEQAGNAARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGR 124
Query: 153 AVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVI 212
LR G+++ L + ARK +N R + +P K AMTLD
Sbjct: 125 GFAKLREAGVEL------LVGVFADYARK----LNEGFSKRIRTGLPLVTLKAAMTLD-- 172
Query: 213 LPGVLSWMLTGKIAASSGHA--------AWISSKTSRDRVFDLRGRSDAVVVGGNTVRRD 264
GKIA WI+S+ +R V +LR +D++++G TV D
Sbjct: 173 ----------GKIAPPPAEVTDIGFSQPGWITSEIARAHVQELRHAADSIMIGVGTVVSD 222
Query: 265 NPRLTARHG--GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR 322
NP LT R G +R+VL L LP ++ L + +V A K + L R
Sbjct: 223 NPLLTDRTGLPRRRPLLRVVLDSQLRLPLDSRLVKTAHHDVLVFCSF-AEEKKRAALEER 281
Query: 323 GVEVVEFDILNSRD--------------VMEYFHDRGYLSILWECGGTLAASAISSGLIH 368
G++V + + + V+E R S++ E G + +A+++G++
Sbjct: 282 GIQVEQVPLAKNEPGGVAVAGGRPDLNAVVERLGARELNSLIVEGGAAVNWAALAAGIVD 341
Query: 369 KVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
KVF + APKI+GG NA G M +A L ++ + G D + G+L+
Sbjct: 342 KVFLYYAPKILGGGNAVPFALGPGYARMDEAAYLRNLELHRFGEDFAVEGYLR 394
>gi|421731173|ref|ZP_16170299.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407075327|gb|EKE48314.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 371
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 183/379 (48%), Gaps = 27/379 (7%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G
Sbjct: 2 DEYYMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAINMAGR 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++
Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ ++ R+ +N +H + +P+ K A +LD G
Sbjct: 121 V-------KTGLL---RQQAEELNKMFLHFMRTGLPYVTLKAAASLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A +G + WI+S+ +R R +++VG TV+ DNP LT R P+R++
Sbjct: 159 KTATETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVI 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L L +PE AN+ APT + T +GA + + L + G++V +E + ++ +V+
Sbjct: 219 LDTKLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVFPLETESIHIPEVLSV 278
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
+ G +S+ E G ++ S + G ++ + AP +IGG AP+ +S G M
Sbjct: 279 LAENGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPNLIGGTLAPSLISGEGFQSMKDVP 338
Query: 401 DLIDICYEQVGPDMLISGF 419
L Q+GPD+ ++
Sbjct: 339 HLQFTQITQIGPDIKLTAI 357
>gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 3_1_5R]
gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 3_1_5R]
Length = 359
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 180/384 (46%), Gaps = 51/384 (13%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+ A ++A G +P+P G ++ + GK+ G+GY + G AEV A++ G
Sbjct: 2 EDLEYMHLALELAKHGEGRVNPNPLVGAVVVKN-GKIIGKGYHHEYGGPHAEVFALQEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G ++ +GI R V+ + +P + G+ + +R G+
Sbjct: 61 EEAKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGI 120
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V + L E EAR +N + ++++PF K +TLD
Sbjct: 121 EVEIGLCET-------EARA----LNRVFLKYISTKLPFLFLKCGITLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK+A + + WI+++ +R++V LR + ++VG +TV DNP L AR G P RI
Sbjct: 159 -GKLATRNFQSKWITNEIAREKVQKLRNKYTGIMVGVHTVIEDNPSLDARIENGRDPYRI 217
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
++ L +P + L D T+++T +L + E D L +R + +
Sbjct: 218 IVDPYLEIPLSSKLLHRHDKKTVIITS---------FLEKETQKKKELDDLETRFI--FL 266
Query: 342 HDR--------------GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
DR G S+L E GG L +SA +I F+APKI+G K A
Sbjct: 267 EDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSAFREDVIDGGEIFIAPKILGDKEAVAF 326
Query: 388 VSELGMVEMSQALDLIDICYEQVG 411
VS M +A+ L ++ Q G
Sbjct: 327 VSGFSKESMDEAITLPNVELHQYG 350
>gi|419454603|ref|ZP_13994566.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP04]
gi|379631044|gb|EHZ95624.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP04]
Length = 366
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPIGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|340757884|ref|ZP_08694476.1| riboflavin biosynthesis protein RibD [Fusobacterium varium ATCC
27725]
gi|340577701|gb|EES64707.2| riboflavin biosynthesis protein RibD [Fusobacterium varium ATCC
27725]
Length = 353
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 180/370 (48%), Gaps = 27/370 (7%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ RA ++A G+ +P+P G ++ GK+ GEGY G AEV A+E G G
Sbjct: 1 MERALELAALGEGYVNPNPMVGAVVVKD-GKIVGEGYHKKYGGPHAEVFALEEAGEKAEG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G ++ GI R ++ +P + G+ ++ + G++V
Sbjct: 60 ATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIEV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ I+E K L +N + +++VP+ K +TLD GKIA+
Sbjct: 117 ----VTGIME---KEALELNRVFMKYISTKVPYLFLKCGITLD------------GKIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G++ WI+++ +R++V LR + ++VG NTV D+P LTAR G P R+V+ L
Sbjct: 158 RTGNSKWITNELAREKVQKLRNKYMGIMVGINTVLADDPSLTARIENGRNPYRVVIDPFL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQ-RGARRKFQKYLASRGVEVVEFDILNSR--DVMEYFHDR 344
++P ++ + D +I++T ++ +L + V V+ + ++ + D+++ +
Sbjct: 218 DIPIDSKFVNFEDGKSILITSYNNVEKERISFLKKKNVNVIFLEGIDFKLYDILKKIGEI 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G +L E G L + A S +I F+APKI+G A + +S L +
Sbjct: 278 GIDGVLLEGGSFLISKAFSEDVIDGGEIFIAPKILGDDKAIPFIKGFNFENISDGFQLRN 337
Query: 405 ICYEQVGPDM 414
+ G ++
Sbjct: 338 VKINNYGNNV 347
>gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42]
gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42]
Length = 371
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAIHMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEV-- 121
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ ++ R+ +N +H + +P+ K A +LD GK A
Sbjct: 122 -----KTGLL---RQQAEELNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--EFDILNSRDVMEYFHD 343
L +PE AN+ APT + T +GA + + L + G++V+ E D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEDCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC3059-06]
gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Hungary19A-6]
gi|418077729|ref|ZP_12714953.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
4027-06]
gi|418079888|ref|ZP_12717104.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6735-05]
gi|418088593|ref|ZP_12725754.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43265]
gi|418097602|ref|ZP_12734704.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6901-05]
gi|418113781|ref|ZP_12750774.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
5787-06]
gi|418115948|ref|ZP_12752925.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6963-05]
gi|418133913|ref|ZP_12770773.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11426]
gi|419439430|ref|ZP_13979487.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40410]
gi|419479085|ref|ZP_14018898.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19101]
gi|419498779|ref|ZP_14038479.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47597]
gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Hungary19A-6]
gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC3059-06]
gi|353748751|gb|EHD29402.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
4027-06]
gi|353754207|gb|EHD34820.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6735-05]
gi|353764334|gb|EHD44883.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43265]
gi|353771758|gb|EHD52265.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6901-05]
gi|353788445|gb|EHD68842.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
5787-06]
gi|353791586|gb|EHD71960.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
6963-05]
gi|353903900|gb|EHE79414.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11426]
gi|379574419|gb|EHZ39362.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19101]
gi|379581915|gb|EHZ46798.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40410]
gi|379603667|gb|EHZ68435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47597]
gi|429317179|emb|CCP36932.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae SPN034156]
Length = 366
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|350266503|ref|YP_004877810.1| riboflavin biosynthesis protein RibD [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599390|gb|AEP87178.1| riboflavin biosynthesis protein RibD [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 361
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 181/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ GS +
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGSHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + + G+ V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIAVE- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A K +N +H + +P+ K A +LD GK A
Sbjct: 123 -----EGILADQAEK----LNEKFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVIADNPSLTCRLPDVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+ + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 ALSIPEDTQVICDQAAPTWIFTTTRADEEKKKRLSALGVNIFTLETERIQVPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|374985087|ref|YP_004960582.1| putative riboflavin/cytosine deaminase [Streptomyces
bingchenggensis BCW-1]
gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces
bingchenggensis BCW-1]
Length = 378
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 190/405 (46%), Gaps = 49/405 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+A +RRA +A + G TSP+P GC+I + G+ AGEG+ G AEV A+ A G
Sbjct: 6 EAEAMRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALRAAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNP-LQHLRGQAVRALR 158
RG TA + +EP C +HT AL+ AGI RVV + +P + G A A
Sbjct: 66 RARGGTAVVTLEP--C--NHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAA 121
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
++ +L + Q+ + EA + + PF ++KYA TLD
Sbjct: 122 GTAVESGLLAD--QAAAVNEAWLTSMRFGR----------PFVLWKYAATLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------- 271
G+ AA+ G + WI+S SR V LR SDAVVVG T+R D+P L R
Sbjct: 162 ----GRSAAADGTSRWITSAESRADVHRLRAESDAVVVGSGTLRADDPHLAVRGASGSNG 217
Query: 272 ---HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
G P+R+VL + +A + D + I V + + R +
Sbjct: 218 ASGSNGARQPLRVVLDSKATIAPDARVLDGTAPTLIAVAEDAPAVRLAGAETVRLPRAIS 277
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L+ ++ H RG S+L E G TLA + +++ + KV ++AP ++ G AP +
Sbjct: 278 GPGLDIPALLGELHGRGIRSVLLEGGPTLAGAFLAARAVDKVVGYLAPALL-GAGAPA-L 335
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSE 433
++ G+ ++QAL L ++GPD+ I+ P PV P E
Sbjct: 336 ADAGITTITQALRLELTDVTRLGPDLRITAVPAPT---APVAPEE 377
>gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
12563]
gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
12563]
Length = 368
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 186/384 (48%), Gaps = 34/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA---VEAGGS 104
Y+R A + A K GFTSP+P G +I K+ G GY G AE+ A + G
Sbjct: 9 YMRMAIEEAKKGEGFTSPNPLVGAVIVKDD-KIIGIGYHQKYGENHAEINAFLDAQKKGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G A+++ I +V++G + + G ++ L+ G++
Sbjct: 68 DVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGIE 127
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V + C +N + ++ PF V KYAMT+D G
Sbjct: 128 VVVN----------VLEEECRKLNEVFFYYIANKRPFVVMKYAMTID------------G 165
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA+SSG + WI+S+ +R+ R + A++VG NTV DNP L R P+RI+L
Sbjct: 166 KIASSSGKSKWITSEKAREHSHRFRNKYSAIMVGINTVIEDNPTLNCRLPNTRNPIRIIL 225
Query: 284 TQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+L + +N+ + + T + T +K K + S G+E+++ + N R ++M
Sbjct: 226 DSSLKIDLNSNICKTAKEIKTFIATISNDEKKI-KEIESLGIEIIKTESDNGRVNLKELM 284
Query: 339 EYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ D+ S+ E G +L AS I L++KV ++APKI GG A +P+ G+ + +
Sbjct: 285 KILGEDKNIDSVYVEGGASLHASLIEERLVNKVLVYIAPKIFGGIKAKSPIGGEGIDDPN 344
Query: 398 QALDLIDICYEQVGPDMLISGFLQ 421
A LI ++ D+ + ++
Sbjct: 345 NAFKLIGGDITKIDEDLFLEYYIN 368
>gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1087-00]
gi|418183974|ref|ZP_12820523.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47283]
gi|419509523|ref|ZP_14049168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP141]
gi|421212223|ref|ZP_15669189.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070108]
gi|421214448|ref|ZP_15671383.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070109]
gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1087-00]
gi|353852443|gb|EHE32431.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47283]
gi|379634709|gb|EHZ99273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP141]
gi|395582068|gb|EJG42531.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070108]
gi|395582801|gb|EJG43251.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070109]
Length = 366
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|406937684|gb|EKD71067.1| Pyrimidine reductase/pyrimidine deaminase [uncultured bacterium]
Length = 359
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 175/363 (48%), Gaps = 42/363 (11%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
S+ YI A ++A++ SP+P GC+I + + G+GY G AE+ A+
Sbjct: 1 MSKTNHQQYISLALELAERGRLTVSPNPMVGCVIVKN-NTIVGQGYHQRAGDAHAEINAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
GS AT Y+ +EP CH T V+A++QA I +VVV +P + G+++ L
Sbjct: 60 RNAGSKAENATMYVTLEPC-CHVGKTPPCVNAIIQAQIKKVVVACLDPNPLMSGKSISIL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
++ G++V + I E+ K+ +N H T++ PF + K+AM++D
Sbjct: 119 QNAGIEVDI-------GICEQEAKT---LNEIFFHYITTKRPFVIAKWAMSID------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-- 275
G+ IS S + LR + DA+++G NT R DNP LT R G
Sbjct: 162 -----GQTITHPEDNRQISCAESHKQTHHLREQVDAILIGANTARVDNPLLTVRLGESPR 216
Query: 276 HTPMRIVLTQTLNLPEEANLWDVS-DAPTIVV-TQRGARRKFQKYLASRGVEVVEFDILN 333
H P+RI+L+ T LPE NL+ S A TI+V T++ + +Y + +E I+
Sbjct: 217 HHPIRIILSSTGQLPENLNLFSHSLPAKTIIVATEKICSQLINQYQKNN----IELLIIK 272
Query: 334 S--------RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
S ++++E R S+L E G T+ + L++K+ ++AP IG
Sbjct: 273 SNQHGQVDIKNLLEELGKRHITSLLVEGGMTIHQHFFAEKLVNKIHVYIAPVFIGKTKTK 332
Query: 386 TPV 388
PV
Sbjct: 333 IPV 335
>gi|421297643|ref|ZP_15748339.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60080]
gi|395905014|gb|EJH15923.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA60080]
Length = 366
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 371
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 179/369 (48%), Gaps = 45/369 (12%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---G 103
+Y++ A D+A G T P+P G +I GK+ G+GY G AE +A++ G
Sbjct: 9 SYMKIALDLAKIRKGLTHPNPTVGAVIVKD-GKIIGKGYHTKAGMPHAEREAIKDAKEKG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGI--RNPLQHLRGQAVRALRS 159
+G+T ++ +EP CH T SA+++ GI+ VV+G +NP+ ++GQ V L+S
Sbjct: 68 HDLKGSTMFVTLEPC-CHYGRTPPCTSAIIEEGISEVVIGALDQNPI--VKGQGVNILKS 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V I K C +N + PF K A + D
Sbjct: 125 HGIKV----------ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFD--------- 165
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTP 278
GKIA G + WI+S+ SR LR + A++VG NT +DNP LT RH P
Sbjct: 166 ---GKIATKIGDSKWITSEKSRQFAHQLRKEASAILVGTNTALKDNPALTVRHVETEKQP 222
Query: 279 MRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDILNSR-- 335
R+++ + L +P N+++ ++A TIV+T + A ++ K L+ + VE+V D+ +
Sbjct: 223 ARVLIDKKLKVPPTYNIYN-NEAKTIVITSKLANQENLKRLSEKENVEIVFLDLDENEKF 281
Query: 336 ---DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
D++ ++R + +L E G + I K+ F AP +IG +S LG
Sbjct: 282 KIDDILNTLYEREIVHLLVEGGRGVITDLIKERKFDKISIFTAPLLIGNDG----ISWLG 337
Query: 393 MVEMSQALD 401
+ + + D
Sbjct: 338 CIGIEKIQD 346
>gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP19-BS75]
gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP23-BS72]
gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC0288-04]
gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
1974]
gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
1974M2]
gi|387625675|ref|YP_006061847.1| riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Streptococcus pneumoniae INV104]
gi|417685666|ref|ZP_12334946.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41301]
gi|417693108|ref|ZP_12342297.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47901]
gi|418073064|ref|ZP_12710327.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11184]
gi|418075319|ref|ZP_12712561.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47502]
gi|418101890|ref|ZP_12738967.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP070]
gi|418104260|ref|ZP_12741320.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44500]
gi|418142972|ref|ZP_12779775.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13494]
gi|418158827|ref|ZP_12795533.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17227]
gi|418165809|ref|ZP_12802467.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17971]
gi|418172589|ref|ZP_12809203.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41277]
gi|418177236|ref|ZP_12813821.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41565]
gi|418181820|ref|ZP_12818381.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43380]
gi|418215664|ref|ZP_12842390.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Netherlands15B-37]
gi|419432837|ref|ZP_13972959.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40183]
gi|419435094|ref|ZP_13975190.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
8190-05]
gi|419456779|ref|ZP_13996728.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02254]
gi|419463519|ref|ZP_14003415.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04175]
gi|419474569|ref|ZP_14014411.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14688]
gi|419485667|ref|ZP_14025434.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44128]
gi|419492341|ref|ZP_14032069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47210]
gi|419496622|ref|ZP_14036334.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47522]
gi|419520166|ref|ZP_14059765.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05245]
gi|419533634|ref|ZP_14073142.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17457]
gi|421208068|ref|ZP_15665093.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070005]
gi|421210201|ref|ZP_15667193.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070035]
gi|421224062|ref|ZP_15680808.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070768]
gi|421233233|ref|ZP_15689858.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2061617]
gi|421267416|ref|ZP_15718291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR95]
gi|421308656|ref|ZP_15759287.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA62681]
gi|444385841|ref|ZP_21183910.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS8203]
gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP19-BS75]
gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP23-BS72]
gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC0288-04]
gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae INV104]
gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41301]
gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47901]
gi|353751333|gb|EHD31965.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47502]
gi|353752602|gb|EHD33227.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11184]
gi|353777602|gb|EHD58074.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP070]
gi|353778694|gb|EHD59160.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44500]
gi|353810715|gb|EHD90965.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13494]
gi|353826482|gb|EHE06640.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17227]
gi|353831904|gb|EHE12027.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17971]
gi|353839288|gb|EHE19362.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41277]
gi|353845678|gb|EHE25718.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41565]
gi|353850057|gb|EHE30061.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43380]
gi|353874570|gb|EHE54425.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Netherlands15B-37]
gi|379533465|gb|EHY98678.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02254]
gi|379540798|gb|EHZ05969.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04175]
gi|379541790|gb|EHZ06955.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05245]
gi|379562076|gb|EHZ27090.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA14688]
gi|379568596|gb|EHZ33575.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17457]
gi|379578959|gb|EHZ43867.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40183]
gi|379588576|gb|EHZ53416.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44128]
gi|379596038|gb|EHZ60843.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47210]
gi|379602747|gb|EHZ67517.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47522]
gi|379616763|gb|EHZ81456.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
8190-05]
gi|395575900|gb|EJG36460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070035]
gi|395576538|gb|EJG37092.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070005]
gi|395591398|gb|EJG51693.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070768]
gi|395603945|gb|EJG64078.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2061617]
gi|395872505|gb|EJG83603.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR95]
gi|395912801|gb|EJH23658.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA62681]
gi|444249158|gb|ELU55653.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS8203]
Length = 366
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|374286843|ref|YP_005033928.1| riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacteriovorax marinus SJ]
gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Bacteriovorax marinus SJ]
Length = 378
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 177/373 (47%), Gaps = 41/373 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D YIRR +A K+ G TSP+P G +I + GEGY G AE A+
Sbjct: 6 DEQYIRRCFALAKKATGMTSPNPLVGSVIVQDN-IIIGEGYHQRYGEPHAEPNAINNAVE 64
Query: 105 FCRGATAYLNMEPGDCHGDHT---AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
GAT Y N+EP CH + V+ ++++ I RVV+ +P ++ G V+ LR G
Sbjct: 65 PVEGATLYCNLEPC-CHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKLREAG 123
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V V + EE R+ +N T++ PF K A TLD
Sbjct: 124 IAVSV------GVLEEEGRE----LNEVFFKYITTQKPFVHIKLAQTLD----------- 162
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG---GGHTP 278
GKIA SG + WISS+ +R+RV R + DAV++G NT+ D+P L R G G P
Sbjct: 163 -GKIATDSGDSKWISSELARERVHQWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHP 221
Query: 279 MRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQ----KYLASRGVEVVEFDIL- 332
RI+L L E ++ D + A TI++T + K ++ ++GV ++ +
Sbjct: 222 FRIILCSVDKLSTEFKVFNDSASAKTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKE 281
Query: 333 NSRDVMEYFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+S D+ + G L SIL E G ++ + I K+ F+ PKIIG N +
Sbjct: 282 DSFDLNDLLLKLGALKISSILVEGGQSVITAFIDQVEYDKLSLFICPKIIG--NGISYYK 339
Query: 390 ELGMVEMSQALDL 402
+MS+A+ L
Sbjct: 340 NDKKQKMSEAIQL 352
>gi|421216584|ref|ZP_15673487.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070335]
gi|395585622|gb|EJG46001.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070335]
Length = 366
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVRGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|418226782|ref|ZP_12853403.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
3063-00]
gi|353883987|gb|EHE63789.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
3063-00]
Length = 366
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSID------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM
4136]
Length = 354
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 186/387 (48%), Gaps = 56/387 (14%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG- 102
ED ++R A A + G TSP+P G ++ + G++ G+G+ + G AEV+A+
Sbjct: 5 EDEKWMRLALAEARRGIGLTSPNPAVGAVL-VNEGRLIGQGWHHRVGQPHAEVEALRNAE 63
Query: 103 ----GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G+ RGATAY+ +EP HG A + AL +AG++RVV G +P G A R L
Sbjct: 64 ANGHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLL 123
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G+ V S ++ R+ C V P T+ +P+ V K +LD
Sbjct: 124 QEAGIAV-------LSGVL---REECEEVLRPFAKWITTGLPYVVAKAGQSLD------- 166
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG---- 273
G++ G + WI+S+ SR LR +SDA+++G T+RRDNPRLT R
Sbjct: 167 -----GRLTRPPGESQWITSEVSRAHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPE 221
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
G P R+V+T+ +LP ANL++ +V + R F
Sbjct: 222 GKIQPWRVVVTRGGDLPRGANLFNDEFKERTLVLE--GERCFP----------------- 262
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
++++ RG S+L E GG L A ++G + +V ++AP+I GG V L
Sbjct: 263 --EILQELAARGITSLLLESGGNLLGQAFAAGAVDEVCWYIAPRICGGGT--MAVGGLDF 318
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFL 420
+++++L E +G D+ + G +
Sbjct: 319 ALGAKSVELEKARVEVLGSDVCVRGLV 345
>gi|384265923|ref|YP_005421630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898936|ref|YP_006329232.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
amyloliquefaciens Y2]
gi|380499276|emb|CCG50314.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173046|gb|AFJ62507.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
amyloliquefaciens Y2]
Length = 371
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 181/376 (48%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T +P G ++ + G++ G G G AEV A+ G +
Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKN-GQIVGMGAHLQYGEAHAEVHAIHMAGRHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + +++P + G+ + L + G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEV-- 121
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
++ ++ R+ +N +H + +P+ K A +LD GK A
Sbjct: 122 -----KTGLL---RQQAEELNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVMEYFHD 343
L +PE AN+ APT + T + A + + L + G++V+ D ++ +V+ +
Sbjct: 222 KLTIPETANVLTDGAAPTWIFTAKDADVQKKDRLTALGIKVIPLDTDRIHVPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + G ++ + APK+IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKEGCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
Length = 383
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 187/388 (48%), Gaps = 46/388 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ +A +A K T P+P GC++ VA EGY G AEV A+ +
Sbjct: 12 WMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVA-EGYHKVAGEGHAEVNAIANANGDTQ 70
Query: 108 GATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G TAY+ +EP G AL++A ++R+V G+++P + G+ + L+ G++V
Sbjct: 71 GCTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEV-- 128
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+G ++++ L +N I R T +P+ K AM+LD G+ A
Sbjct: 129 IGPVMETE--------ALALNPGFIKRMTEGLPYVRLKLAMSLD------------GRTA 168
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM------- 279
SG + WI+ +R V LR +SDA+V G +V D+P +T R + P+
Sbjct: 169 MESGESQWITGPDARLDVQKLRAQSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQ 228
Query: 280 --RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE--------F 329
RI++ L++P E+ + + I + A + K L +GV V
Sbjct: 229 PKRIIMDTALSIPPESKILYPCNQVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGI 288
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
D++ S ME D+G +L E G LA + + GL+ +V ++APK++ G NA P+
Sbjct: 289 DLVVS---METLADQGINEVLVETGAVLAGAFLQEGLVDEVVLYMAPKLL-GSNA-RPLM 343
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLIS 417
+L + M+QA+D + Q+G D+ ++
Sbjct: 344 QLPLDSMAQAVDFEMVNLSQLGKDIKLT 371
>gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 361
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 182/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ GS +
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGSHAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + + G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIEVK- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A K +N +H + +P+ K A +LD GK A
Sbjct: 123 -----EGILADQAEK----LNEKFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVIADNPSLTCRLPDVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+ + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 ALSIPEDTQVICDQAAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG ++P+ +S G M L
Sbjct: 282 EGVMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHSPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
Length = 434
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 200/389 (51%), Gaps = 40/389 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D ++ RA ++A G T P+P G ++ G++ GEG+ G AEV A
Sbjct: 5 DDKKFMARALELAANGMGHTRPNPMVGAVL-VKDGEIIGEGWHEFYGGPHAEVNAF---- 59
Query: 104 SFCR----GATAYLNMEPGDCHGDHTAVSA--LVQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ CR GAT Y+ +EP CH T A +V + RVVV +++P + G+ +R L
Sbjct: 60 ADCRADPAGATLYVTLEPC-CHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G+ V + ++E K ++N + T + PF ++K A+++D
Sbjct: 119 KDAGIFV-------TTGVME---KEAQVLNEVFMKFITEKKPFVLYKSAVSMD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
GK A +G + WISS+ SR+ V LRG AV+ G T+ D+P LTAR G
Sbjct: 162 -----GKTACHTGKSQWISSEESREEVRTLRGLYAAVMAGAGTIAADDPLLTARTEGLED 216
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD-----IL 332
P+RI++ L++ E+ ++ ++ IV+T A + K S+G+EV+ D +
Sbjct: 217 PVRIIVDGKLSVSMESRVFG-GESRVIVLTTSSAASEKVKAFQSKGIEVIFADSDTEGCV 275
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ M +G SIL E G AA+A +G++ K+ ++AP +IGGK+AP V G
Sbjct: 276 DLEAAMIGLAVKGIDSILLEGGAETAAAAFEAGIVDKIRFYMAPILIGGKDAPGAVGGTG 335
Query: 393 MVEMSQALDLIDICYEQVGPDMLISGFLQ 421
+ +A+ L +I E+ G D+++ G+++
Sbjct: 336 AALIPEAVQLENIRTERSGVDLVVEGYVK 364
>gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium gonidiaformans ATCC 25563]
gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium gonidiaformans ATCC 25563]
Length = 359
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 179/384 (46%), Gaps = 51/384 (13%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+ A ++A G +P+P G ++ + GK+ G+GY + G AEV A++ G
Sbjct: 2 EDLEYMHLALELAKHGEGRVNPNPLVGAVVVKN-GKIIGKGYHHEYGGPHAEVFALQEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP +G ++ +GI R V+ + +P + G+ + +R G+
Sbjct: 61 EEAKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGI 120
Query: 163 QVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V + L E EAR +N + ++++PF K +TLD
Sbjct: 121 EVEIGLCET-------EARA----LNRVFLKYISTKLPFLFLKCGITLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GK+A + WI+++ +R++V LR + ++VG +TV DNP L AR G P RI
Sbjct: 159 -GKLATRDFQSKWITNEIAREKVQQLRNKYTGIMVGVHTVIEDNPSLDARIENGRDPYRI 217
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
++ L +P + L D T+++T +L + E D L +R + +
Sbjct: 218 IVDPYLEIPLSSKLLHRHDKKTVIITS---------FLEKETQKKKELDDLETRFI--FL 266
Query: 342 HDR--------------GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
DR G S+L E GG L +SA +I F+APKI+G K A
Sbjct: 267 EDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSAFREDVIDGGEIFIAPKILGDKEAVAF 326
Query: 388 VSELGMVEMSQALDLIDICYEQVG 411
VS M +A+ L ++ Q G
Sbjct: 327 VSGFSKESMDEAITLPNVELHQYG 350
>gi|418192882|ref|ZP_12829378.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47439]
gi|419481229|ref|ZP_14021025.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40563]
gi|421205606|ref|ZP_15662673.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2090008]
gi|421228868|ref|ZP_15685546.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2061376]
gi|421239758|ref|ZP_15696311.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2080913]
gi|421290986|ref|ZP_15741730.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA56348]
gi|421310890|ref|ZP_15761503.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA58981]
gi|353861029|gb|EHE40968.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47439]
gi|379582636|gb|EHZ47514.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA40563]
gi|395578027|gb|EJG38555.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2090008]
gi|395598535|gb|EJG58736.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2061376]
gi|395610632|gb|EJG70708.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2080913]
gi|395896786|gb|EJH07751.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA56348]
gi|395913850|gb|EJH24699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA58981]
Length = 366
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|304320114|ref|YP_003853757.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Parvularcula bermudensis HTCC2503]
gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
+5-amino-6-(5-phosphoribosylamino)uracil reductase
(RibD) [Parvularcula bermudensis HTCC2503]
Length = 366
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 181/382 (47%), Gaps = 36/382 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + RAA + + AGFT+P+P GC++ G++ GEGY G AE+ A++A G+
Sbjct: 5 DDICMDRAAALGELGAGFTAPNPMVGCVL-VKGGQIVGEGYHPRPGADHAEIAALKAAGA 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA AY+ +EP + +G + AL++AG+ VV + +P L L++ G+
Sbjct: 64 EARGAVAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADP-NPLASGGRETLQAAGIA 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V S++ + R S T+ P+ K+A TLD G
Sbjct: 123 VRAHPTLAASRLTDAWRFSL-----------TADRPWVAAKFAATLD------------G 159
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRI 281
++A G + WI+ +R R DLR RS A+VVG TV DNP L R G +++
Sbjct: 160 RVATRGGDSQWITGPAARARSHDLRQRSGAIVVGVGTVLADNPALNPRPEGRAAAETLKV 219
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSRDV 337
+ P A S P +++T A + L G ++ E + L R
Sbjct: 220 IFDSQARTPPHAACLS-SPGPVLLITAEDAPGAAKSALKESGAHIISVQRENEGLCLRSA 278
Query: 338 MEYFH-DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
+ D G LSI+ E GG L S +GLI +V+AF+APKI+GG V G +
Sbjct: 279 LHCLRADFGCLSIMVEGGGRLLGSFADAGLIDEVWAFLAPKILGGGQ--CAVDGHGPSRI 336
Query: 397 SQALDLIDICYEQVGPDMLISG 418
+A+ L D+ E GPD LI G
Sbjct: 337 GEAMALTDVSIEMAGPDFLIRG 358
>gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum
ferrodiazotrophum]
Length = 397
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 37/352 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D +++RA +A+K +P+P G ++ GKV GEGY G + AEV A+ A G
Sbjct: 10 DRRWMQRALVLAEKGRDTVAPNPMVGAVV-VRDGKVVGEGYHREAGQEHAEVLALRAAGD 68
Query: 105 FCRGATAYLNMEPGDCHGDHT---AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
RGAT Y+N+EP CH + A+VQAG+ RVVV +R+P + G+ + L Q
Sbjct: 69 RARGATLYVNLEPC-CHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLAGQR 127
Query: 162 LQVHVLGEDL-QSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
L V E L ++ E+ R L+ P+ K AM+LD
Sbjct: 128 LDVS---EGLFAARAFEQNRGFSSLIR--------QGRPYVTLKGAMSLD---------- 166
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTP 278
GKIA S+G + WIS S LR DA++VG +T +D+PRLT R G H P
Sbjct: 167 --GKIATSTGDSQWISGSRSLAYAHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQP 224
Query: 279 MRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEV-----VEFDIL 332
R++L T LP ++ L+ + P +V A + + L G + V +
Sbjct: 225 ARVILDSTGRLPPDSRLFGEEGGGPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEI 284
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
+ R ++ + G L++L E G + AS +++GL+ ++ +AP +IGG +A
Sbjct: 285 DLRALLAVLAEEGLLTVLVEGGSRVNASFLAAGLVDRIRVVLAPLLIGGTDA 336
>gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6]
gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP11-BS70]
gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
MLV-016]
gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CGSP14]
gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
BS455]
gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus
pneumoniae AP200]
gi|387758540|ref|YP_006065518.1| riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Streptococcus pneumoniae INV200]
gi|418124804|ref|ZP_12761727.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44511]
gi|418145426|ref|ZP_12782212.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13637]
gi|418188430|ref|ZP_12824945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47373]
gi|418190650|ref|ZP_12827155.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47388]
gi|418213385|ref|ZP_12840120.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA54644]
gi|418233404|ref|ZP_12859985.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA08780]
gi|419465831|ref|ZP_14005717.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05248]
gi|419470220|ref|ZP_14010080.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA07914]
gi|419476842|ref|ZP_14016668.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA18068]
gi|419483450|ref|ZP_14023226.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43257]
gi|419503067|ref|ZP_14042743.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47760]
gi|419511637|ref|ZP_14051271.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05578]
gi|419513800|ref|ZP_14053428.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
England14-9]
gi|419515907|ref|ZP_14055525.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02506]
gi|421226356|ref|ZP_15683070.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2072047]
gi|421235372|ref|ZP_15691973.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2071004]
gi|421248542|ref|ZP_15705005.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2082239]
gi|421265266|ref|ZP_15716150.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR27]
gi|421282424|ref|ZP_15733214.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04216]
gi|421293301|ref|ZP_15744028.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA56113]
gi|421299906|ref|ZP_15750578.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19998]
gi|421313163|ref|ZP_15763757.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47562]
gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6]
gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP11-BS70]
gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CGSP14]
gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
MLV-016]
gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae INV200]
gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
BS455]
gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus
pneumoniae AP200]
gi|353801660|gb|EHD81962.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44511]
gi|353816300|gb|EHD96509.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13637]
gi|353855572|gb|EHE35541.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47373]
gi|353858249|gb|EHE38209.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47388]
gi|353870668|gb|EHE50539.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA54644]
gi|353889988|gb|EHE69755.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA08780]
gi|379547403|gb|EHZ12540.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05248]
gi|379547853|gb|EHZ12988.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA07914]
gi|379567641|gb|EHZ32624.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA18068]
gi|379582961|gb|EHZ47838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA43257]
gi|379610441|gb|EHZ75172.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47760]
gi|379636107|gb|EIA00665.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA05578]
gi|379638290|gb|EIA02835.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
England14-9]
gi|379639910|gb|EIA04449.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA02506]
gi|395597426|gb|EJG57632.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2072047]
gi|395604291|gb|EJG64423.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2071004]
gi|395615171|gb|EJG75187.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2082239]
gi|395869288|gb|EJG80403.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR27]
gi|395884394|gb|EJG95432.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04216]
gi|395896355|gb|EJH07322.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA56113]
gi|395901003|gb|EJH11940.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19998]
gi|395915134|gb|EJH25974.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47562]
Length = 366
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
Length = 365
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 183/376 (48%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A +A + G TSP+P G ++ + G++ G G GT AEV A+ A G +
Sbjct: 6 YMELAISLAAATKGQTSPNPQVGAVVVKN-GEILGMGAHLKAGTPHAEVHAIAAAGEKAK 64
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP G + L+ +GI RV + +P + G+ + ++ G++V
Sbjct: 65 GADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEV-- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + EEA +N P H ++ P+ K A + D GK A
Sbjct: 123 ----VTGLLKEEADA----LNEPFFHFIKTKTPYVTIKAASSFD------------GKTA 162
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQ 285
A +G + WI+S SR V LR DA++ G NT+ DNP LTAR GG P+R+VL
Sbjct: 163 AKTGDSKWITSPESRQDVHRLRHEHDAILTGVNTIIHDNPLLTARLPQGGKNPIRVVLDT 222
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEYFHD 343
L +P +AN+ TI+ T R + L EV F + + ++V+ +
Sbjct: 223 NLRIPADANVIRDQSVKTIIFTGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGE 282
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG--MVEMSQALD 401
R +++ E G + AS I+SG ++ ++APKIIGG A + G V+ + AL+
Sbjct: 283 RNIMTLFVEGGSEIHASFINSGFFQQIILYMAPKIIGGNKAIPFIGGDGANYVKDAPALE 342
Query: 402 LIDICYEQVGPDMLIS 417
+I E++G D+ I+
Sbjct: 343 FTEI--EKIGGDLRIT 356
>gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
Length = 383
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 193/393 (49%), Gaps = 41/393 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A++R+A ++A + G TSP+P GC++ +V G G+ G AEV A+ G
Sbjct: 6 DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGA-EVVGRGFHPRAGEPHAEVLALRQAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP +G + AL++AG+ RVVV +P + G+ + L G+
Sbjct: 65 RAQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVA 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + +EA + + + HR PF VFK A++LD G
Sbjct: 125 VTT------GLLRDEAERQQEVFRHWIAHRE----PFVVFKTALSLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------HGGGH 276
K A +G A W+S + +R+RV LR DAVVVG TV D+P LT R H
Sbjct: 163 KTATVAGDARWVSGEAARERVQLLRDELDAVVVGVGTVLTDDPWLTCRLREPAVPHRVPR 222
Query: 277 TPMRIVLTQTLNLPEEANLWDVSD----APTIVVTQRGARRKFQKYLASRGVEVVEFDI- 331
P+++V P A L+ A +++ GA + L G EVV +
Sbjct: 223 DPVKVVFDTHARTPPRARLFAPGPRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAG 282
Query: 332 LNSRDVME----YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
+ R +E RG +L E G LA S +G +HKV AFVAPK++GG+ PTP
Sbjct: 283 PDGRPRLEAALQALEARGLTGLLLEGGSVLAGSFFDAGKVHKVVAFVAPKLVGGRG-PTP 341
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
++ G+ MSQA L + E +G D+L+ G+L
Sbjct: 342 LAGNGVARMSQARHLERVRVEPLGTDVLVEGYL 374
>gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
Length = 353
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 35/374 (9%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGAT 110
RA ++A G T P+P GC++ GK+ EGY G AEV A+ G + +T
Sbjct: 3 RALELARLRKGLTHPNPTVGCVVVKD-GKIISEGYHERAGAPHAEVVALSKAGQNAKDST 61
Query: 111 AYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGE 169
Y+ +EP +G +A+++AG+ RVVV +P + G + LR+ G+QV V
Sbjct: 62 LYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDV--- 118
Query: 170 DLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASS 229
+ EEAR+ +N T P+ K+A ++D G +A +
Sbjct: 119 ---GVLEEEARQ----LNEDFFVYITQNRPYITLKWAQSID------------GSLATKT 159
Query: 230 GHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQTLN 288
G + WI+S+ SR+ LR + A++VG NTV +D+P LT R P+R+VL L
Sbjct: 160 GDSKWITSRESREFAHRLRAEATAILVGVNTVVKDDPLLTVRAFLWERQPIRVVLDPYLR 219
Query: 289 LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD----VMEYFHDR 344
P +ANL + A TI+VT K +K L GV VV+ + + R +M + H +
Sbjct: 220 TPLQANLMVDTSAKTILVTCSQKEDKVKK-LEDMGVSVVKAECVKGRVDLRWLMRWMHQQ 278
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG-GKNAPTPVSELGMVEMSQALDLI 403
+ ++ E G I GL ++ F+ P +IG G +P +E ++ A+ L
Sbjct: 279 EIMHLMVEGGARTLEGFIEEGLWDRIVVFLGPLLIGNGIRVRSPGAE----KLMDAIPLR 334
Query: 404 DICYEQVGPDMLIS 417
Q+G D+ I
Sbjct: 335 KRRLWQLGEDVAIE 348
>gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP9-BS68]
gi|417678156|ref|ZP_12327557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17570]
gi|419507288|ref|ZP_14046944.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49542]
gi|421219430|ref|ZP_15676292.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070425]
gi|421221747|ref|ZP_15678548.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070531]
gi|421277988|ref|ZP_15728800.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17301]
gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP9-BS68]
gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17570]
gi|379613423|gb|EHZ78135.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA49542]
gi|395590838|gb|EJG51138.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070531]
gi|395591230|gb|EJG51526.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2070425]
gi|395883107|gb|EJG94150.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17301]
Length = 366
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVQQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
Length = 373
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 171/358 (47%), Gaps = 45/358 (12%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D AY+ RA +A + T P+P GC++ + G++ GEG+ G AEV A+
Sbjct: 1 MEQVNDRAYMARALKLAWRGLFTTDPNPRVGCVLVRA-GEIVGEGWHQWAGDAHAEVNAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
RGAT Y+ +EP CH T AL++AG+ RVV +R+P + GQ + L
Sbjct: 60 RQADVRARGATCYVTLEPC-CHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQL 118
Query: 158 RSQGLQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
R GLQV +L E+ Q+ +N + R P+ K AM+LD
Sbjct: 119 REAGLQVEYGLLQEEAQA------------LNPGFVQRLVQGRPWVRCKLAMSLD----- 161
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--- 272
G A +SG + WI++ +R V R RS A++ G TV D+P L R+
Sbjct: 162 -------GATALASGESRWITAPPARRDVQRWRARSSAILTGIGTVIGDDPALNVRYEEL 214
Query: 273 ------GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV 326
G P R++L + L + E+A L + P ++ G + K + L S+G EV
Sbjct: 215 QNEVPPGFDRQPWRVILDRKLAISEKARLLSLP-GPVLIACADGEQPKAES-LRSKGAEV 272
Query: 327 VEFDI----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
+ + L+ + +M R + ECG LA S + +GL+ ++ ++APK++G
Sbjct: 273 ISLPVASEGLDLKALMAVLAAREINELHVECGARLAGSLLQAGLMDELVLYIAPKLMG 330
>gi|423558323|ref|ZP_17534625.1| riboflavin biosynthesis protein RibD [Bacillus cereus MC67]
gi|401191591|gb|EJQ98613.1| riboflavin biosynthesis protein RibD [Bacillus cereus MC67]
Length = 361
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 183/385 (47%), Gaps = 44/385 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A +A ++G TSP+P G ++ G + G G G + AEV A+ G
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKD-GNIVGMGAHMRAGEEHAEVHALHMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVRALRSQG 161
+GAT Y+ +EP G L++ G+ RVV+ NPL + G R L G
Sbjct: 62 RAKGATVYITLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPL--VSGNGKRRLEEAG 119
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V + ++E +L+N H ++ PF K AM+LD
Sbjct: 120 IKV-------TTGVLE---AEAILLNRYFFHYMKTKQPFVTIKTAMSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPM 279
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +GG H P+
Sbjct: 159 -GKTATVTGESKWITGEEARADVHQYRHMHDAILVGVNTVITDNPHLTTRIPNGGKH-PI 216
Query: 280 RIVLTQTLNLPEEANLWDVSDAPT-IVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRD 336
R++L L P +++ S APT I+V + + K Y S + V + + +D
Sbjct: 217 RVILDTHLRTPPSSHVITDSLAPTWIIVGKDVNKEKIASY-ESNNIAVFQMKTKQIEIQD 275
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ ++ LS+ E G T+ A+ + + +++ +++PK+IGG G ++
Sbjct: 276 VLSLLGEKQILSLFVEGGQTVHANFLKTNSFNEIVTYISPKLIGGA---------GFSKL 326
Query: 397 SQALDLIDICYEQVGPDMLISGFLQ 421
AL L +Q+G D+ I L+
Sbjct: 327 QDALSLTIQEMKQIGNDIKIVATLK 351
>gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
TIGR4]
gi|418186205|ref|ZP_12822736.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47360]
gi|418228929|ref|ZP_12855540.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP01]
gi|421242015|ref|ZP_15698544.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2081074]
gi|421246355|ref|ZP_15702846.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2082170]
gi|421269624|ref|ZP_15720481.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR48]
gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
TIGR4]
gi|353854027|gb|EHE34007.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47360]
gi|353891367|gb|EHE71123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
EU-NP01]
gi|395611878|gb|EJG71932.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2081074]
gi|395616474|gb|EJG76485.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2082170]
gi|395870276|gb|EJG81389.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SPAR48]
Length = 366
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APK+ GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKVFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|386851393|ref|YP_006269406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Actinoplanes sp. SE50/110]
gi|359838897|gb|AEV87338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Actinoplanes sp. SE50/110]
Length = 351
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 185/386 (47%), Gaps = 50/386 (12%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED A +RRA +A + G TSP+P GCL+ + G+V GEG+ G AE+ A+ G
Sbjct: 4 EDEA-MRRAIALAARGLGTTSPNPVVGCLLLDAAGEVVGEGFHAYAGGPHAEIVALAQAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RG T + +EP + G S AL+QAG+ RVV+ + +P G A LR+ G+
Sbjct: 63 ERARGGTCVVTLEPCNHTGRTGPCSDALLQAGLRRVVIAVDDPNPVASGGAA-TLRAAGV 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV R L N + PF +K+A TLD
Sbjct: 122 QVET----------GVRRAEAELGNLAWLTAVRRGRPFVTWKFAATLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGG---HT 277
G+ AA+ G + W+SS SR V LR DA+V G TV D+P+LT R G
Sbjct: 160 GRSAAADGTSQWVSSAESRFDVHLLRSTVDAIVAGVGTVLADDPQLTVRDLRDGSLAIRQ 219
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVT--QRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+V+ PE A + D + APT +VT + GA + L +
Sbjct: 220 PLRVVVDSHRRTPENARVRDAA-APTWIVTADEVGAGPDGRVDLTA-------------- 264
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
V+ +DRG ++L E G TLA + +++GL+ +V +VAPK++G A + +G +
Sbjct: 265 -VLTGLYDRGIRNVLLEGGPTLAGAFLAAGLVDRVIGYVAPKLLGAGRAALVDAGVGTIA 323
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQ 421
+ LD DI Q+G D+ + L+
Sbjct: 324 DALELDFTDIA--QIGGDLRFTATLR 347
>gi|411001507|ref|ZP_11377836.1| riboflavin biosynthesis protein RibD [Streptomyces globisporus
C-1027]
Length = 366
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 190/387 (49%), Gaps = 36/387 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D +RRA +A + G TSP+P GC+I + G VAGEG+ G AEV A+ A
Sbjct: 4 AADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRAA 63
Query: 103 GSFCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G RG TAY+ +EP C +HT AL+ AGI+RVV + +P G A L
Sbjct: 64 GDRARGGTAYVTLEP--C--NHTGRTGPCAQALLAAGISRVVYAVGDPNPQATGGA-DTL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R+ G+Q + L ++ E + L + + R P+ ++KYA TLD
Sbjct: 119 RAAGVQAE---QGLLAEEAEAGNAAWL--TSVRLGR-----PYVLWKYAATLD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+IAA+ + WI+S +R V LR +DAV+VG T R D+P+L R G T
Sbjct: 162 -----GRIAAADATSRWITSPEARADVHRLRAEADAVLVGSGTARTDDPQLGVRGIDGAT 216
Query: 278 -PMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+V+ T + A + D + I V + + R L+
Sbjct: 217 QPLRVVVDTNAAAVKPGARVLDATAPTLIAVAEDAPAGHLPEAAVLRLPRAATGPGLDLD 276
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++E H RG S+L E G TLA + +++G + KV ++AP ++G P +++ G+
Sbjct: 277 ALLEALHTRGVRSVLLEGGPTLAGAFVAAGKVDKVVGYLAPVLLGA--GPAALADAGIST 334
Query: 396 MSQALDLIDICYEQVGPDMLISGFLQP 422
+SQAL L +GPD+ ++ P
Sbjct: 335 ISQALRLDVTETVPIGPDLRVTAVPAP 361
>gi|336400104|ref|ZP_08580892.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 21_1A]
gi|336163301|gb|EGN66233.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 21_1A]
Length = 370
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 178/374 (47%), Gaps = 35/374 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 1 MDKNSDKKYMARAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALR 158
G +GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ +
Sbjct: 60 NEAGENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIE 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+ G++V LG ++E+ K VN + +++P+ K +TLD
Sbjct: 120 NAGIEVE-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----- 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ----GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFG 217
Query: 274 -GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVE 328
P R+V+ L P EA + +D I++T R K ++Y L +R + +E
Sbjct: 218 IEKRNPFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNRELEKIKEYKNLGARFI-FLE 276
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
I +++++ S+L E G L ++A +I F+APKIIG +A +
Sbjct: 277 GKIFKMKNILKELGKLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFI 336
Query: 389 SELGMVEMSQALDL 402
+ M L
Sbjct: 337 NGFNFDNMEDVFKL 350
>gi|419468108|ref|ZP_14007981.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA06083]
gi|379548378|gb|EHZ13510.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA06083]
Length = 366
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + +D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGRLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 365
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 179/362 (49%), Gaps = 32/362 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ ++ Y+R +A + G TSP+P GC++ K+ G G+ G+ AEV A+
Sbjct: 8 KRQNEYYMRIVLSLARRGTGRTSPNPRVGCVVVKDD-KIVGTGFHRCPGSPHAEVMALSM 66
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
RGAT Y+N+EP +G + L V+ GI RV + +P +RG+ V LRS
Sbjct: 67 AKDMSRGATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEYLRSH 126
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + + +EAR +N + P+ K AM+LD
Sbjct: 127 GVEV------VSGVLSDEAR----WLNRGFLKVFEEGRPWITLKAAMSLD---------- 166
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280
G +A S G + WI+ ++S R LR +DAV+VG T+ +D+P LT R+ G P++
Sbjct: 167 --GDVALSDGSSRWITGRSSLKRSHLLRAEADAVLVGIGTILKDDPELTVRYVEGEHPLK 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-----DILNSR 335
I+L L +P A ++ D +VVT +G+ + + + SRG V++ L+ +
Sbjct: 225 IILDTHLRIPINAKVFKEGD--VLVVTSKGSSPQKVEEIISRGAGVMQIPTDSRGFLDIK 282
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG-GKNAPTPVSELGMV 394
+++ +L E G + +S + L ++ F APKI+G GK A + +S + M
Sbjct: 283 EMVCKLPSMDVHYLLVEGGPNVLSSFFDAKLFDEMALFYAPKIMGRGKGAFSGLSLMSMS 342
Query: 395 EM 396
E+
Sbjct: 343 EI 344
>gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 392
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/378 (34%), Positives = 183/378 (48%), Gaps = 35/378 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R A A + G TSP+P G ++ V + A G AEV A+ A G+ R
Sbjct: 28 FMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPH-AEVVALRAAGALAR 86
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y +EP D G S AL++AG+ RV VG +P + G+ + LR G+ V
Sbjct: 87 GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAV-- 144
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ R C +NAP T R PF K A+TLD G+IA
Sbjct: 145 --------VKGVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLD------------GRIA 184
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQ 285
+G A W+S + +R V LR R DAV+VG T R D+PRLT R GG P+R+VL
Sbjct: 185 TRTGDARWVSGEAARAWVHRLRDRVDAVLVGAGTARADDPRLTTRLPRGGRDPIRVVLDS 244
Query: 286 TLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVMEY 340
L+LP L+ S APT+V GVE++ ++ RD++
Sbjct: 245 DLSLPRTLALFRGGSPAPTLVAHA----APAPARPYGPGVELLRCRRGKGGVDLRDLLAK 300
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQAL 400
RG +L E G + A + +GL+ +V FVAPKI GG P V+ G M+ AL
Sbjct: 301 LAARGVAHLLVEGGAHVHARFLEAGLVDRVAVFVAPKIAGGDGVPL-VAGRGPARMADAL 359
Query: 401 DLIDICYEQVGPDMLISG 418
L + +E+VG D+L++G
Sbjct: 360 RLDQVAFERVGDDVLVTG 377
>gi|410626490|ref|ZP_11337251.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
mesophila KMM 241]
gi|410154029|dbj|GAC24020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
mesophila KMM 241]
Length = 372
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 196/400 (49%), Gaps = 51/400 (12%)
Query: 37 FCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96
+FS A DA + A +A+K TSP+PN GC+I + G + G+G+ GT AE+
Sbjct: 1 MTQFS-ALDAKMMALAIRLAEKGQYTTSPNPNVGCVIIDAQGNIVGQGWHQKAGTPHAEI 59
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVR 155
A+ G +GATAY+ +EP + HG S AL++AG+ RVV + +P + G ++
Sbjct: 60 HAIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALLKAGVKRVVAAMVDPNPLVAGSGLQ 119
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+ V S ++E + + +N I R + +P+ K A +LD
Sbjct: 120 KLCDAGVAV-------SSGLLE---REAMALNLGFIKRMKTGMPWVTVKLASSLD----- 164
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-- 273
GK A ++G + WI+ +R+ V R +S A++ G TV DNP L R+
Sbjct: 165 -------GKTALNNGESQWITGPLAREDVQRHRAQSCAILSGSGTVLADNPSLNVRYSEL 217
Query: 274 ----------GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKF----QKYL 319
P+R++L + + +L+ +S +P +++ + +F ++Y
Sbjct: 218 GFAKNEIAEVNLRLPVRVLLDGRNQMRPDLHLFSLS-SPIVIINSQPNTAEFPDHVEQYQ 276
Query: 320 A-SRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKI 378
A S G + L+ DV+++ +RG+ I E G LA + + + LI ++ + APK+
Sbjct: 277 AHSNGAQ------LDLHDVIKHLGERGFNQIWVEAGAKLAGALLQNKLIDELILYQAPKL 330
Query: 379 IGGKNAPT-PVSELGMVEMSQALDLIDICYEQVGPDMLIS 417
+G K V EL +M QA +L QVGPD+ ++
Sbjct: 331 LGDKGRDLFAVDEL--TQMQQAFELQWQDVRQVGPDLKLT 368
>gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
3776]
gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
3776]
Length = 401
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 189/409 (46%), Gaps = 49/409 (11%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A + A +A + GF P+P G ++ ++ GEG+ G AEV A+ G
Sbjct: 8 AVMEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHALAKAGEKA 67
Query: 107 RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
RGAT Y +EP G + AL+ AGI V + +P H+ GQ + LR G+ V+
Sbjct: 68 RGATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKLRQAGITVN 127
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
V + ++AR+ + AP + + P+ K+AMTLD GKI
Sbjct: 128 V------GRCADKARE----LLAPFVAFQCANRPWVHAKWAMTLD------------GKI 165
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHTPMR 280
+ +GH+ WISS+ SR V +LRGR DA+VVG TV D+P+L R G TP R
Sbjct: 166 STKTGHSHWISSEASRRTVHELRGRVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPAR 225
Query: 281 IVLTQTLNLPEEANLWDVS-DAPTIVVT------QRGAR----RKFQKYLASRGVEVVEF 329
IVL L++ + L + PTIV T Q R ++ ++ L + G +V
Sbjct: 226 IVLDSRLSISPHSQLVQTARKIPTIVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSL 285
Query: 330 -----DI-LNSRDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKII 379
DI L + + D+ G +L E G + S + LI +V A++APK++
Sbjct: 286 PCGSTDIGLAHHPCLIHLLDKMRAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLV 345
Query: 380 GGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMP 428
GG A +P++ G + + + + + D G + D +P
Sbjct: 346 GGSAAASPIAGKGRMTIFDGEEFASGEFTTIDKDAYFHGIRRVAIDRLP 394
>gi|421237642|ref|ZP_15694215.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2071247]
gi|395605168|gb|EJG65299.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
2071247]
Length = 366
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAMT+D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMTMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEERKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|392407158|ref|YP_006443766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaerobaculum mobile DSM 13181]
gi|390620294|gb|AFM21441.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaerobaculum mobile DSM 13181]
Length = 362
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 32/356 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+R A +A + G T+P+P GC++ G + G G+ G AEV+A+ G
Sbjct: 12 YMRMALSLAQRGTGTTTPNPRVGCVVVKD-GTIVGMGFHRYPGGPHAEVEALSEAGEMAE 70
Query: 108 GATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GAT Y+N+EP +G L VQ+GI R + ++P ++G+ + L S+GL V V
Sbjct: 71 GATLYVNLEPCTHYGRTPPCCPLIVQSGIKRAFIATKDPFPKVQGKGIEYLSSRGLDVTV 130
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E K +N P+ K A +LD G +A
Sbjct: 131 -------GILE---KEARWLNRGFFKAYEEGRPWITLKAASSLD------------GNVA 168
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
G + W++ ++S R LR +DA++VG TV RD+P+LT R G P++IVL
Sbjct: 169 LEDGSSRWVTGQSSLKRAHLLRAETDAILVGIGTVLRDDPQLTVRMTDGRNPLKIVLDTN 228
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-DVMEYFHDRG 345
L +P +A L++ + T++VT + + + + L SRGV V++ + + D+ E
Sbjct: 229 LRIPFDAKLFN--EGMTLIVTSKDSPSQKVEELISRGVSVLQVPTDSGKLDIKELVFKLP 286
Query: 346 YLSI---LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ + L E G + +S +GL + F APK++G SEL +MS
Sbjct: 287 SMEVHYLLVEGGPKILSSFFRAGLCDDMALFYAPKVMG--KGIGMFSELSFADMSN 340
>gi|419531476|ref|ZP_14070996.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47794]
gi|379609802|gb|EHZ74539.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47794]
Length = 366
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRK 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 GAIRLKPYAFSQIGNDYLI 355
>gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
17093]
gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
17093]
Length = 393
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 205/404 (50%), Gaps = 47/404 (11%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE-- 100
AE Y+ RA ++A++ G T+P+P GC+I ++ GEG+ G AEV+A++
Sbjct: 10 AEHERYMSRALELAERGRGSTAPNPMVGCVIVRDD-EIIGEGWHERAGEAHAEVRALQDA 68
Query: 101 -AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+ G+ RGAT Y+ +EP + G + A+++AG+ RVV+ +P + G V L+
Sbjct: 69 RSRGARVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQ 128
Query: 159 SQGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
+ G++V VL + +++ E ++ L P + ++K AMTLD
Sbjct: 129 AAGVEVVTGVLAAEAEAQ--NEVFRTVHLRGRPWV----------LYKTAMTLD------ 170
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276
GKIA +G + WI+ +R+RV R AV VG NTV D+P LT R GGH
Sbjct: 171 ------GKIATRTGRSRWITGPAARERVQRWRAHLSAVAVGVNTVLLDDPLLTCRVPGGH 224
Query: 277 TPMRIVLTQTLNLPEEANLWD-----VSDAPTIVVTQR--GARRKFQKYLASRGVEVVEF 329
TP ++V P A L+ + T+ VT+R AR +Y RG EVV
Sbjct: 225 TPHKVVFDTVARTPPTAQLFHPDPQGEAARVTLFVTERAPAARVAALRY---RGAEVVVL 281
Query: 330 ----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
+ R + + + G ++L E GGTLA S + +V F+ PK++GG A
Sbjct: 282 PETRGRADVRSALAHLKEVGVQTLLLEGGGTLAWSFFEVQAVDRVAVFIGPKLLGGGGA- 340
Query: 386 TPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ-PIPDLMP 428
+P+ LG+ EM +A+ L + E+VG D+L++G + P P P
Sbjct: 341 SPLGGLGVTEMERAITLSGLTTEEVGGDLLVTGRVHYPEPADTP 384
>gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 365
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 32/356 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++ A D+A G TSP+P G +I ++ G G+ G AEV A++
Sbjct: 6 DKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDN-QIIGRGWHEKYGEAHAEVNALDNCQV 64
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH S ++++GI+ VV+G +P + G+ + L++ +
Sbjct: 65 SPNGATMYVTLEPC-CHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNSEI 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V QS + ++ C +N H + P+ + KYAMT D
Sbjct: 124 KV------TQSVL----QRECDELNTVFFHYIKTNRPYVILKYAMTAD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA +G + WI+ + +R +V R R A++VG TV +DNP L R G+ P+R++
Sbjct: 162 GKIATYTGESKWITGEKARKQVHRDRDRYSAIMVGVGTVLKDNPMLNCRIENGNNPLRVI 221
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P +N+ S+ PT++ T ++++Y A G ++++ + ++ ++
Sbjct: 222 CDTKLRTPFTSNVVKTASEIPTLIATASEDNARWRQYEA-YGCKLIKIPKDGESIDLVEL 280
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
++ + S++ E G L S + + L++KV +V K+ GG NA TP++ G+
Sbjct: 281 IKVLGENKIDSVIVEGGAKLNWSILKASLMNKVQVYVGAKLFGGANAKTPIAGDGL 336
>gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
Length = 375
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 184/398 (46%), Gaps = 50/398 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ RA ++A K T P+P GC+I G+V GEG+ G AEV A+ G
Sbjct: 8 DAHYMARAVELARKGLYTTHPNPRVGCVI-VRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA AY+ +EP HG + ALV+AG+ RVV +++P + G +R LR G++
Sbjct: 67 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR +N + R +PF K AM+LD
Sbjct: 127 V-------ASGVLEAEARA----LNPGFLKRMEHGLPFVRAKLAMSLD------------ 163
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------- 272
G+ A +SG + WI+ +R V LR RS V+ +V +DN R+T R
Sbjct: 164 GRTAMASGESQWITGPAARAAVQRLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALT 223
Query: 273 --GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF- 329
P+R+++ L LP +A + P +VVT G ++ A+ G E++
Sbjct: 224 TLALSRPPLRVLVDGRLRLPLDAPFFQAG--PALVVTAAGDDPRY----AAAGHELLNLP 277
Query: 330 ---DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
D ++ ++ +RG IL E G L + GL+ + FVA +G +
Sbjct: 278 GDDDQVDLPALLRCLAERGVNEILLEAGAGLVGAFARQGLVDEFQLFVAGTFLGSEA--R 335
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
P+ + + +MS+A L VG D ++ L P P
Sbjct: 336 PLLDWPLSKMSEAPRLKITEMRAVGDDWRVTAILLPAP 373
>gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
Length = 379
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 180/385 (46%), Gaps = 33/385 (8%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ R D Y+R A +A+ ++G TSP+P G ++ G + G G G + AEV A
Sbjct: 6 EVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKD-GNIVGMGAHLRAGEEHAEVHA 64
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIR--NPLQHLRGQAVR 155
+ G +GAT Y+ +EP G L++ + RVV+ NPL + G +
Sbjct: 65 LHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPL--VSGNGKK 122
Query: 156 ALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L G+ D+ + ++E L+N H ++ PF K AM+LD
Sbjct: 123 RLEEAGI-------DVTTGVLE---AEATLLNRFFFHYMKTKRPFVTIKTAMSLD----- 167
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HG 273
GK A +G + WI+ + +R V R DA++VG NTV DNP LT R +G
Sbjct: 168 -------GKTATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG 220
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
G H P+R++L L P +++ PT + + ++ S V + +
Sbjct: 221 GKH-PIRVILDTHLRTPPSSHVIKDGLVPTWIFVGKDVNKEKIASYESENVTIFQMKTKQ 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ D++ + ++ LS+ E G ++ AS + + +++ +++P +IGGK+APT
Sbjct: 280 IEIEDLLFFLGEKQILSLFVEGGQSIHASFLQTKHFNEIITYISPILIGGKDAPTLFGGN 339
Query: 392 GMVEMSQALDLIDICYEQVGPDMLI 416
G + AL L +Q+G D+ I
Sbjct: 340 GFAALQDALSLEIQEMKQIGDDIKI 364
>gi|452943703|ref|YP_007499868.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Hydrogenobaculum sp. HO]
gi|452882121|gb|AGG14825.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Hydrogenobaculum sp. HO]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 25/339 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A + A K G T P+P G LI GK+ G GT AE+ A++
Sbjct: 3 KDIYYMKLALEEAYKYKGQTHPNPAVGALIVKD-GKILSIGAHKKAGTDHAEIVALKNAQ 61
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP HG A++ +GI +VV+G +P + G+ + L+S G+
Sbjct: 62 EDVKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSSGI 121
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V I++E C +N T + PF K AM+LD
Sbjct: 122 EVEV-------GILKE---ECDKLNEDFFVYITRKRPFVTLKCAMSLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GK+A + + WISS+ +R R S A++VG NT+ DNP LT R G + P +
Sbjct: 160 GKLAKENKESKWISSEKARKISHIYRKHSSAILVGINTILNDNPELTVRLEGNEYQPYSV 219
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
V+ L++P +AN++ I++ A K ++YL S GV ++E + + + +++
Sbjct: 220 VIDPNLDVPYDANMFKKGYEKIIIIVSTKADEKKKEYLKSLGVRLLELESFDIKSILKAL 279
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
++ + I E G + + + K+ F K IG
Sbjct: 280 YEIDIMHIFVEGGAYTISRFLEENMWDKMLIFRGYKFIG 318
>gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
Length = 369
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 175/369 (47%), Gaps = 35/369 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G +P+P G +I GK+ GEG+ G AEV A+ G
Sbjct: 6 DEKYMARAIELAKRGIGGVNPNPLVGAVIVKD-GKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP G + +V+ GI R VV +P + G+ ++ + G++
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V LG ++E+ K VN + +++P+ K +TLD G
Sbjct: 125 VE-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR---HGGG---HT 277
KIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R G
Sbjct: 163 KIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEFDILN 333
P R+V+ L P EA + +D I++T + K +KY L +R + +E I
Sbjct: 223 PFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNKGLEKIEKYKNLGTRFI-FLEGKIFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+++ S+L E G L ++A +I F+APKIIG +A ++
Sbjct: 282 MEDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNF 341
Query: 394 VEMSQALDL 402
M + L
Sbjct: 342 GNMEEVFKL 350
>gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
str. 28L]
gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
str. 28L]
Length = 378
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 175/370 (47%), Gaps = 34/370 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E A Y+++A +A + G+TSP+P GC+I G++ G GY + G AEV A++ G
Sbjct: 2 EAAEYMKKALALAKIALGYTSPNPVVGCVIVKD-GEIVGTGYHHQAGAPHAEVLALQEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP +G + LVQ I +VV+ + +P + G+ LR G+
Sbjct: 61 DRATGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + EA K +N I S +PF K A +LD
Sbjct: 121 VVEV------GLLSAEAVK----LNEVFIKNMLSNIPFIAIKLAQSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT 277
G IA +GH+ WI++ SR LR D ++VG NT+ DNP LT R H
Sbjct: 159 GCIATRTGHSQWITNAWSRQYGQYLRSIYDGILVGINTILEDNPLLTCRVRREGQAVPHQ 218
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV 337
P+RIVL P + + + A TI++T ++ ++ L + GV V+ N+ V
Sbjct: 219 PIRIVLDTYGRTPLSSQVVNDKTARTIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCV 278
Query: 338 -----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++ G SIL E G T+ S + L+ K++AF+ IIGG A V+ G
Sbjct: 279 DLHAALQLLRQEGIGSILVEGGSTIHGSFFDAKLVDKIYAFLGNSIIGGTCALCSVAGEG 338
Query: 393 MVEMSQALDL 402
+ + + + L
Sbjct: 339 VDGLEECVPL 348
>gi|451948169|ref|YP_007468764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfocapsa
sulfexigens DSM 10523]
gi|451907517|gb|AGF79111.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfocapsa
sulfexigens DSM 10523]
Length = 363
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 179/380 (47%), Gaps = 33/380 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+R A A K G TSP+P G ++ V GY GT AEV A+ GS G
Sbjct: 1 MRLALHQARKGIGRTSPNPCVGAVVVQDDDTVVSRGYHKKAGTPHAEVHALRKAGSRAEG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP + G S A+ AGI RVVVG+ +P + G + LR QG++V
Sbjct: 61 ATIYVTLEPCNHTGRTPPCSHAVAAAGIKRVVVGMVDPNPLVSGSGISYLRKQGIEV--- 117
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
S ++E C VN P + T+ PF V K M+LD GK++
Sbjct: 118 ----LSGVLEN---ECKEVNLPFVKHITTGKPFVVMKAGMSLD------------GKLSY 158
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLTQT 286
G ++ SR V LR DA++VG TV DNP LT R G P+R+VL +
Sbjct: 159 QKGVPGKMTGAKSRRTVHGLRNSMDAILVGVGTVIADNPSLTTRLVKCGRDPLRVVLDSS 218
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDI------LNSRDVM 338
L + +A + + S A T++ A R ++ L GV V + L+ V+
Sbjct: 219 LRISSQAKILHLDSSASTLIFCSPVADRDKKELLGKMDGVNVQSVALDETGRGLDMNRVL 278
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
++ G S+L E G + S +S L+ +V FVAP + GG + +S + + +
Sbjct: 279 DHLGKMGICSLLVEGGAEIHGSFLSKSLVDRVMLFVAP-LFGGSSGTPLLSGFPVSDNTS 337
Query: 399 ALDLIDICYEQVGPDMLISG 418
A L +I Y++ G D+L+ G
Sbjct: 338 APRLQNIHYKKCGEDVLVRG 357
>gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
gi|158449142|gb|EDP26137.1| riboflavin biosynthesis protein RibD [Coprococcus eutactus ATCC
27759]
Length = 382
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 169/368 (45%), Gaps = 47/368 (12%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE--AGGS 104
AY+RRA ++A K G +P+P G +I + G++ GEGY G AE A A +
Sbjct: 13 AYMRRAIELAKKGTGAVNPNPLVGAVIVKA-GRIIGEGYHVRYGELHAERAAFASLADPA 71
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GA Y+ +EP CH V A+++ I +V G +P + G+ R LR G+
Sbjct: 72 EAEGAVMYVTLEPC-CHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFRRLRDAGI 130
Query: 163 QV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+V H L + C +N ++ P+ KYAMT+D
Sbjct: 131 EVYTHCL------------KDECDALNDIFFKYIIAKKPYVTMKYAMTMD---------- 168
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----- 275
G+IA G + WI+ + SR V +LR R ++ G TV D+P LT R G
Sbjct: 169 --GRIATHIGASKWITGEASRAYVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDT 226
Query: 276 ---HTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKY--LASRGVEVVEF 329
P+RI+ L +PE++N+ + + TIV T K L + V ++E
Sbjct: 227 DNVRNPIRIICDSKLRIPEDSNIVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIET 286
Query: 330 DILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
D + +M+ +G IL E GG L S +S GL+ + F+APKI GG+
Sbjct: 287 DSTDGNVDLGQLMDILGGKGIDGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKY 346
Query: 386 TPVSELGM 393
+PVS G+
Sbjct: 347 SPVSGTGV 354
>gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
5692]
gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
5692]
Length = 384
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 181/388 (46%), Gaps = 49/388 (12%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---EAGGSF 105
++ A ++ + G T+P+P G +I T G V EGY A G AEV+A+ A G
Sbjct: 1 MQHAVELGETGFGRTAPNPCVGAVI-TRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVD 59
Query: 106 CRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
T ++ +EP + HG + A+++AGI V +G +P H+ G LR QG++V
Sbjct: 60 LSECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEV 119
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V I+E A C + A + + P + K A TLD GK
Sbjct: 120 EV-------GILEPA---CRDLIADFLLWQQEKRPGVLLKLAATLD------------GK 157
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGHTPMRIV 282
IA SGH+AW+S +R+ V LRGR D V+VGG T+R DNPRLT R P+ +V
Sbjct: 158 IATRSGHSAWVSGPEAREEVHGLRGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALV 217
Query: 283 LTQTL-----------NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR--GVEVVEF 329
+T L + P+E W D R + + L R + +
Sbjct: 218 VTSRLPEAQDDLHLLRHRPQETIFWTTDD------QSRTPQADALRALGCRIWDLPLTAS 271
Query: 330 DILNSRDVMEYFHDRGY-LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
+L+ R + +F D+G +IL E GG LA + GL ++ ++APKI+G A
Sbjct: 272 GMLDLRAGLTHFFDQGLGHTILCEGGGRLALALAEQGLADRLRLYLAPKILGDATAINLF 331
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLI 416
S ++M QAL QVG DM +
Sbjct: 332 SGRDELDMGQALPWRFTRSRQVGADMCL 359
>gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD
[Candidatus Kuenenia stuttgartiensis]
Length = 367
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 192/388 (49%), Gaps = 29/388 (7%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ D Y+ A ++A+K G P+P G +I + ++ G+GY G AE+ A+
Sbjct: 3 LMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNN-EIVGKGYHKNYGGAHAEIHAI 61
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
GG C+GAT Y+ MEP +G +A++ AGI +VV +P G+ V+ L+
Sbjct: 62 NEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQLQ 121
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
+ G+ V + ++E+ K +NAP +P+ + K+AM++D
Sbjct: 122 AAGITVRM-------GVMEDQAKK---LNAPFFKLIQKGMPYIIVKWAMSID-------- 163
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA +G + WI+S+ SR V LR + D V+VG NTV +D+P LT R GG P
Sbjct: 164 ----GKIATVTGDSKWITSEESRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNGGRNP 219
Query: 279 MRIVLTQTLNLP-EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD-ILNSRD 336
RI++ +LP A + V + I+ + A +K + L G V+E + + D
Sbjct: 220 KRIIIDSRASLPLTSALIRTVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVD 279
Query: 337 VMEYFHDRGYL---SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+ E F G + +I+ E G + S + L K+ F+AP IIGG +PV G+
Sbjct: 280 LKELFLKLGSMRLTNIMVEGGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGV 339
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQ 421
+ AL + ++ + + D+++ G L
Sbjct: 340 ENVCDALKIREVRHYRFSDDIVVEGLLN 367
>gi|386387641|ref|ZP_10072628.1| riboflavin biosynthesis protein RibD [Streptomyces tsukubaensis
NRRL18488]
gi|385664889|gb|EIF88645.1| riboflavin biosynthesis protein RibD [Streptomyces tsukubaensis
NRRL18488]
Length = 391
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 190/389 (48%), Gaps = 44/389 (11%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A D A +RRA +A + G TSP+P GC++ + G++AGEGY G AEV A+
Sbjct: 1 MATAADLAAMRRAIALAARGLGATSPNPVVGCVVTDAAGRIAGEGYHRRAGGPHAEVHAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
A G RG TAY+ +EP D G + AL +AGI RVV + +P G + LR
Sbjct: 61 RAAGDRARGGTAYVTLEPCDHTGRTGPCTRALTEAGIRRVVYAVPDPTPQAAGGS-STLR 119
Query: 159 SQGLQVHVLGEDLQSKII--EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
+ G+ +S ++ E A + + A R P+ ++KYA TLD
Sbjct: 120 AAGIVT-------ESGLLAAEAAEGNTAWLTAVRTGR-----PYVLWKYAATLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGG 275
G+IAA + WI+S +R V LR +DAVVVG T+ D+P+L R G
Sbjct: 162 ------GRIAAEDRTSRWITSPEARADVHRLRAEADAVVVGSGTLAADDPQLAVRGIEGA 215
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
P+R+VL + A + D APT+V GA G E VE
Sbjct: 216 VQPLRVVLDTRATIRPGARILD-GTAPTLVAVGTGADPGPVP-----GAEFVELPPADDG 269
Query: 332 ---LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L+ R ++ + RG S+L E G TLA + +++G I +V ++AP ++G A
Sbjct: 270 GPGLSVRALLAELYGRGVRSVLLEGGPTLAGAFVAAGAIDRVVGYLAPVLLGAGPAALGG 329
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLIS 417
+ +G + + LD+ + ++GPD+ I+
Sbjct: 330 AGIGTIADALRLDMTETV--RIGPDLRIT 356
>gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
thiodismutans ASO3-1]
Length = 371
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 191/388 (49%), Gaps = 43/388 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE------A 101
++ +A +A ++ GFT+P+P G L+ T ++ G+G+ A G AEV+A+E A
Sbjct: 6 FMLKALGLARQAKGFTAPNPCVGALV-TCGDRIMGKGWHRAPGENHAEVEAIENARENGA 64
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
S CR Y+ +EP + HG +A++QAGI +++G R+P ++G LR+
Sbjct: 65 DLSSCR---MYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAEFLRNH 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
GL+V V E+ + CL + A S P+ K A TLD
Sbjct: 122 GLRVTVGVEE----------QKCLDLIADFSLWQNSGRPYVYLKTASTLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPM 279
G+IA +GH+ W++S +R V LR AV+VGGNT +DNP LT R + P
Sbjct: 162 --GRIATRTGHSRWVTSANARQMVHQLRSIVGAVLVGGNTFYQDNPALTCRIQEVKNQPW 219
Query: 280 RIVLTQTLNLPEEA-NLWDVSDAPTIVVTQRG-ARRKFQKYLASRGVEVVEFDI----LN 333
+VLT L P++ L + TI T + A L +RG V+ D L+
Sbjct: 220 AVVLTSRLPDPDQDFYLLQKRASRTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLD 279
Query: 334 SRDVMEYF-HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ +E + G +L E GG LA+S + GL +V+AFVA KI+G A PV+
Sbjct: 280 LKLGLEMLRRETGIYYLLCEGGGQLASSLLQQGLADEVWAFVALKILGDSLA-VPVTSGR 338
Query: 393 MVE-MSQALDLIDICYEQVGPDMLISGF 419
VE M Q LD +GP++L+ F
Sbjct: 339 EVELMDQTLDFRPGEILNLGPEILLRLF 366
>gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
33386]
gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
33386]
Length = 363
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 39/390 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +IA+K G +P+P G ++ G V G+GY G AEV A++ G
Sbjct: 2 DKKYMEMALEIAEKGLGHVNPNPLVGAVVVKD-GTVVGKGYHGVYGGPHAEVYALDEAGK 60
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA Y+ +EP +G ++++GI R VG +P + G+ + L+ ++
Sbjct: 61 SAEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIE 120
Query: 164 VH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
VH VL E+ C +N ++P+ K A+TLD
Sbjct: 121 VHTGVLKEE------------CDNINKAFFKYIKEKIPYLFLKCAITLD----------- 157
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281
GKIA+ +G + WIS++T+R++V R + ++VG TV DNPRLTAR G P+RI
Sbjct: 158 -GKIASRNGDSKWISNETAREKVQFYRNKFMGIMVGIGTVLNDNPRLTARIENGVNPLRI 216
Query: 282 VLTQTLNLPEEANLWDVS-DAPTIVVTQRG--ARRKFQKYLASRGVEVV-----EFDILN 333
++ L + E N+ + D TI++T K+ + G++ + EF +
Sbjct: 217 IVDPHLKVNTELNIISNNYDKKTIIITSENNTGTAKYSELENEFGIKFITLPDYEFSV-- 274
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D++ S+L E G + + A S LI F++ KI+G + + +S
Sbjct: 275 -SDILRELGRAKIDSVLLEGGEKMISKAFSEKLIDGGEIFISDKILGDSSGKSFISGFST 333
Query: 394 VEMSQALDLIDICYEQVGPDMLISGFLQPI 423
++S ++ L +I Y G ++ + LQ +
Sbjct: 334 EKISDSIILRNIKYNLYGNNIGVEFELQEV 363
>gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio metschnikovii CIP 69.14]
gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio metschnikovii CIP 69.14]
Length = 369
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 185/400 (46%), Gaps = 50/400 (12%)
Query: 36 VFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAE 95
+ FS A D + RA +A + T+P+P GC+I T G++ GEG+ Y G AE
Sbjct: 1 MMSNFS-AVDYQMMARAIQLAQRGRFTTAPNPKVGCVI-TQQGRIVGEGFHYRAGQPHAE 58
Query: 96 VQAVEAGGSFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAV 154
V A+ + RGATAY+ +EP +G L+QAG+ +V+ +++P + G+ +
Sbjct: 59 VHALRMAKEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGI 118
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
LR G++V V + +K++ N I R + +P+ K A +LD
Sbjct: 119 AMLREAGIEVEVGLLEADAKVL----------NPAFIKRMQTGMPYVQLKLAASLD---- 164
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--- 271
G+ A ++G + WI+S +R V R ++ AV+ TV DN L R
Sbjct: 165 --------GQTALANGESQWITSAQARQDVQVYRAQAGAVLSTSQTVIADNASLAVRWSE 216
Query: 272 ----------HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLAS 321
H P R++L + L + L+ + +P I V ++ A
Sbjct: 217 LPADVQQQYPHAELRQPTRVILDRQHQLHQSLALY-ATTSPIIRVAEQD---------AE 266
Query: 322 RGVEVVEFDILNSRDVMEYFHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIG 380
V + E L+ RD + ++ ++ LW E G TLA S + L+ ++ ++APKI+
Sbjct: 267 LCVPLNEHQQLDLRDTLASLAEQYQINHLWVEAGPTLAKSLLEQQLVDELIIYLAPKIM- 325
Query: 381 GKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G + + LG M QAL L+ VGPD+ ++ L
Sbjct: 326 GSDGRGLLGALGFTHMDQALGLVIQDCRMVGPDLRLTATL 365
>gi|75908506|ref|YP_322802.1| hypothetical protein Ava_2289 [Anabaena variabilis ATCC 29413]
gi|75702231|gb|ABA21907.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 157
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 95/154 (61%), Gaps = 11/154 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPH I++ + W +VEHYYQA KF G D A + I+
Sbjct: 3 IYFYKVWQPYGCFSNFSPHSIEIQGTH----WLTVEHYYQAQKFVGSVDAA---IIPAIR 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
T+K+PEEAA LGR RQ +R DW+ VK +M A+ KF + + +LLSTG V
Sbjct: 56 TSKTPEEAAALGRCTSRQ----LRPDWDLVKTIVMREAVLKKFLTHADIREVLLSTGNEV 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
LVE S D FWG G + G N+LG++LM +R E
Sbjct: 112 LVENSSCDYFWGCGADKTGQNHLGKILMSVREEI 145
>gi|421527332|ref|ZP_15973935.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum ChDC F128]
gi|402256540|gb|EJU07019.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum ChDC F128]
Length = 369
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 170/351 (48%), Gaps = 35/351 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 6 DEKYMARAIELAKRGIGGVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWALNEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP G + V +AGI R VV +P + G+ ++ + G++
Sbjct: 65 NAKGATIYITLEPCSHQGKTPPCAKRVAEAGIKRCVVACIDPNPLVAGKGIKIIEDAGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V LG ++E+ K +N +R+P+ K +TLD G
Sbjct: 125 VK-LG------VLEKEAKE---INKIFFKYIENRIPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGHT 277
KIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 163 KIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLNEEKFGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEFDILN 333
P R+V+ L P EA + +D I++T + K ++Y L +R + +E I
Sbjct: 223 PFRVVIDPDLESPIEAKFLNFNDDKAIIITSSDNKELEKIEEYKNLGTRFI-FLEGKIFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
D+++ G S+L E G L ++A ++ F+APKIIG +A
Sbjct: 282 MEDILKELGKLGIDSVLLEGGSGLISTAFKENIVDAGEIFIAPKIIGDNSA 332
>gi|2493562|sp|P70814.1|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens]
Length = 371
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T P+P G ++ ++ G G G AEV A+ GS +
Sbjct: 5 YMNTAIELARRGEGQTQPNPLVGAVVVKKR-QIVGMGAHLQYGEAHAEVHAINMAGSLAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + + +P + G+ + L G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R ++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQRILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L +PE AN+ APT + T G+ + + L + G++V +E D ++ +V+ +
Sbjct: 222 KLTVPETANVLTDGAAPTWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + +G ++ + AP +IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>gi|345010724|ref|YP_004813078.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
gi|344037073|gb|AEM82798.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
Length = 369
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 191/394 (48%), Gaps = 39/394 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A +A +R A +A + G TSP+P GC+I + G+V GEG+ G AEV A+
Sbjct: 1 MATAAEAQAMRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPL-QHLRGQAVRAL 157
A G RG TA + +EP D G S AL+ AGI RV + +P Q G A A
Sbjct: 61 RAAGDRARGGTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAA 120
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
++ +L E+ ++ VN P + PF ++K+A TLD
Sbjct: 121 AGVEVEAGLLAEEAEA------------VNEPWLTAMRRGRPFVLWKFAATLD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G+ AA+ G + WI+S SR V LR +DAVVVG T R D+P L R G T
Sbjct: 162 -----GRSAAADGTSRWITSPESRADVHRLRAEADAVVVGSGTQRADDPHLAVRDREGVT 216
Query: 278 -PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDI---- 331
P+R+V+ + A + D APT++ A +L R GVE V
Sbjct: 217 QPLRVVVDTAATIKPGARILD-DAAPTLLAV---AEDASTAHLPRRPGVETVRLPRADGG 272
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
L ++ H RG S+L E G TLA + +++G + KV ++AP ++G P +++
Sbjct: 273 LAIPALLAELHGRGVRSVLLEGGPTLAGAFLAAGAVDKVIGYLAPVLLGA--GPAALADA 330
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGF-LQPIP 424
G+ ++QAL L ++GPD+ ++ + P P
Sbjct: 331 GITTIAQALRLATADVTRLGPDLRVTAVPVAPAP 364
>gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
Length = 383
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 186/399 (46%), Gaps = 47/399 (11%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+ RA +A K T P+PN GC+I V GEGY G AE+ A+ G
Sbjct: 8 EDIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDN-HVIGEGYHMRAGENHAEINALSVAG 66
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+F +GATAY+ +EP +G +AL+++GI RVVV + +P L G+ ++ L+ G+
Sbjct: 67 NFAKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGI 126
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++ EA +N I R + +P+ K A +LD
Sbjct: 127 LVS------HSIMLSEAES----INKGFIKRIRTGMPWIKLKLASSLD------------ 164
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----------- 271
G++A SSG + WI+S SR V R SD ++ +TV DNPRL R
Sbjct: 165 GRVAMSSGESKWITSVQSRQDVQCFRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNI 224
Query: 272 HGGGHT---PMRIVLTQTLN-LPEEANLWDVSDAPTIVVTQRGAR--RKFQKYLASRGVE 325
+ G+ P+R+++ T LP + + + + + + ++ L S V
Sbjct: 225 YINGNQIRHPLRVIIDSTNRILPTHRFIQNEGGVILVRIKKDNLNWPKSVEQLLVSPIVN 284
Query: 326 VVEFDILNSRDVMEYFHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
+ +N + +M+Y ++ +W E G TL+ + + GL+ +V + A K +G
Sbjct: 285 KSGLNQINLKKLMQYLACYLKINSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAK 344
Query: 385 P-TPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
P + L + + LIDI +GPD+ + LQP
Sbjct: 345 PLCLLPNLNKLSDIKTFKLIDI--TSIGPDIRL--ILQP 379
>gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 7_1]
gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 7_1]
Length = 370
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 176/372 (47%), Gaps = 35/372 (9%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 3 KNSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWALNE 61
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+ +E G + +V+AGI R VV +P + G+ ++ +
Sbjct: 62 AGENAKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V + ++E+ K VN + +++P+ K +TLD
Sbjct: 122 GIEV-------KFGVLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------G 274
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 --GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIE 219
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEFD 330
P RIV+ L P EA + +D I+VT R K ++Y L +R + +E
Sbjct: 220 KRNPFRIVVDPNLESPIEAKFLNFNDGKAIIVTSNDNRELEKIKEYKNLGTRFI-FLEGK 278
Query: 331 ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSE 390
I +D+++ S+L E G L ++A +I+ F+APKIIG +A ++
Sbjct: 279 IFKMKDILKELGKLEIDSVLLEGGSGLISTAFKENIINAGEIFIAPKIIGDNSAIPFING 338
Query: 391 LGMVEMSQALDL 402
M L
Sbjct: 339 FNFDNMEDVFKL 350
>gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
70585]
gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
70585]
Length = 366
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 181/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRII 218
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + +D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++A KI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIASKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|335049773|ref|ZP_08542759.1| riboflavin biosynthesis protein RibD [Megasphaera sp. UPII 199-6]
gi|333762268|gb|EGL39772.1| riboflavin biosynthesis protein RibD [Megasphaera sp. UPII 199-6]
Length = 378
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 175/370 (47%), Gaps = 34/370 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
E A Y+++A +A + G+TSP+P GC+I G++ G GY + G AEV A++ G
Sbjct: 2 EAAEYMKKALALAKIALGYTSPNPVVGCVIVKD-GEIVGTGYHHQAGAPHAEVLALQEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP +G + LVQ I +VV+ + +P + G+ LR G+
Sbjct: 61 DRATGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + EA K +N I S +PF K A +LD
Sbjct: 121 VVEV------GLLSAEAVK----LNEVFIKNMLSNIPFIAIKLAQSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHT 277
G IA +GH+ WI++ SR LR D ++VG NT+ DNP LT R H
Sbjct: 159 GCIATRTGHSQWITNAWSRQYGQYLRSIYDGILVGINTILEDNPLLTCRVRREGQVVPHQ 218
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV 337
P+RIVL P + + + A TI++T ++ ++ L + GV V+ N+ V
Sbjct: 219 PIRIVLDTYGRTPLSSQVVNDKTARTIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCV 278
Query: 338 -----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++ G SIL E G T+ S + L+ K++AF+ IIGG A V+ G
Sbjct: 279 DLHAALQLLRQEGIGSILVEGGSTIHGSFFDAKLVDKIYAFLGNSIIGGTCALCSVAGEG 338
Query: 393 MVEMSQALDL 402
+ + + + L
Sbjct: 339 VDGLEECVPL 348
>gi|410091956|ref|ZP_11288500.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
gi|409760699|gb|EKN45823.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
Length = 378
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 183/400 (45%), Gaps = 48/400 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+ RA ++A K T P+P GC+I G++ GEG+ G AEV A+
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVI-VREGQIVGEGWHALAGEPHAEVHALRQA 65
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G RGATAY+ +EP HG + ALV AG+TRVV +++P + G+ + L + G
Sbjct: 66 GEQARGATAYVTLEPCSHHGRTPPCADALVNAGVTRVVASMQDPNPEVAGRGLLRLMTAG 125
Query: 162 LQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V Q ++E EAR +N I R + P+ K AM+LD
Sbjct: 126 IAV-------QCGVLEAEARA----LNKGFIKRMETGQPYVRVKLAMSLD---------- 164
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------- 271
G+ A +SG + WI+ +R V LR +S V+ G +TV D RLT R
Sbjct: 165 --GRTAMASGESQWITGPEARSAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAE 222
Query: 272 ---HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A A AR ++ G E+V
Sbjct: 223 LTALAAARVPLRVLIDGRLRVPLDAPFLQAGSALVATCAAASARGRYH----DEGHEIVA 278
Query: 329 F----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
++ R ++ RG +L E G LA + GL+ + F+A K +G ++
Sbjct: 279 MADSAGHVDLRKLLTELGTRGVNEVLVEAGPRLAGAFTRLGLVDEFQIFIAGKFLG--SS 336
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
P+ +L + +MS+AL+L + VG D + P+P
Sbjct: 337 ARPLLDLPLAQMSEALELNIVEMRAVGNDWRVIALPVPVP 376
>gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC
700669]
gi|415696726|ref|ZP_11456368.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
459-5]
gi|415748561|ref|ZP_11476613.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SV35]
gi|415751287|ref|ZP_11478522.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SV36]
gi|418122508|ref|ZP_12759443.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44378]
gi|418127090|ref|ZP_12763988.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP170]
gi|418136252|ref|ZP_12773096.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11663]
gi|419472295|ref|ZP_14012148.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13430]
gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae ATCC 700669]
gi|353797981|gb|EHD78311.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA44378]
gi|353800895|gb|EHD81203.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
NP170]
gi|353903310|gb|EHE78834.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11663]
gi|379553197|gb|EHZ18281.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA13430]
gi|381310892|gb|EIC51717.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SV36]
gi|381318818|gb|EIC59535.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SV35]
gi|381319819|gb|EIC60501.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
459-5]
Length = 366
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 181/379 (47%), Gaps = 33/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D+ Y++ A +A K AG+ +P+P G +I + G+GY G AE A++
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRE 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L L
Sbjct: 62 SPVGATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV V I+E CL + T VP+ KYAM++D
Sbjct: 121 QVTV-------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
GKIA + + WI+ + +R V LR A++VG NTV +D+P LT R P+RI+
Sbjct: 159 GKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEERKNPIRII 218
Query: 283 LTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDV 337
L P + + + D T + T + K + Y + G E++ + ++ +
Sbjct: 219 CDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M++ + S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ +
Sbjct: 278 MQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPN 336
Query: 398 QALDLIDICYEQVGPDMLI 416
A+ L + Q+G D LI
Sbjct: 337 DAIRLKPYAFSQIGNDYLI 355
>gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Coprococcus sp. ART55/1]
Length = 382
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 170/370 (45%), Gaps = 47/370 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA--G 102
D +Y+RRA ++A + G +P+P G +I G++ GEGY G AE A +
Sbjct: 11 DPSYMRRAIELARRGTGAVNPNPLVGAVIVKD-GRIIGEGYHVRYGELHAERAAFASLKD 69
Query: 103 GSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ GA Y+ +EP CH V A+++ I +V G +P + G+ + LR
Sbjct: 70 QADAEGAVMYVTLEPC-CHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRDA 128
Query: 161 GLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V H L + C +N ++ P+ KYAMT+D
Sbjct: 129 GIEVYTHCL------------KAECDAINGIFFKYIVNKQPYVTMKYAMTMD-------- 168
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR------- 271
G+IA +G + WI+ + SR V +LR R ++ G TV D+P LT R
Sbjct: 169 ----GRIATHTGASKWITGEASRAYVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDR 224
Query: 272 -HGGGHTPMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKY--LASRGVEVV 327
P+RIV L +PE++ + + + TIV T K L +GV ++
Sbjct: 225 DTDNVRNPIRIVCDSKLRIPEDSQIVQTAGEIETIVATTAAGASDSAKCERLKDKGVSII 284
Query: 328 EFDILNS----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
E + ++ R +M +G IL E GG L S +S GL+ + F+APKI GG+
Sbjct: 285 ETEDVDGQVDLRQLMTILGGKGIDGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEG 344
Query: 384 APTPVSELGM 393
+PVS G+
Sbjct: 345 KYSPVSGTGV 354
>gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
Length = 357
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 179/379 (47%), Gaps = 47/379 (12%)
Query: 52 AADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATA 111
A + + G P+P GC++ G++ G G+ G AEV A+ G RGATA
Sbjct: 4 ALSLGRRGQGNCWPNPAVGCVL-VREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGATA 62
Query: 112 YLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGED 170
++ +EP HG AL+ AGI R+V + + + GQ LR G++V V
Sbjct: 63 FVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEV---- 118
Query: 171 LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSG 230
+ EEA + +A ++ PF K A + D G+IA +G
Sbjct: 119 --GVLSEEAARD----HAGFFYKTEQGRPFVTLKMASSFD------------GRIATGTG 160
Query: 231 HAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLTQTLNL 289
+ WI+ +R V +R R DAVVVG T R D+P LT R G H P+R+V+++ L+L
Sbjct: 161 QSKWITGPEARRAVHAMRARHDAVVVGAGTARADDPSLTVRDLGVAHQPVRVVISRHLDL 220
Query: 290 PEEANL-WDVSDAPTIVVTQRGA---RRKFQKYL-------ASRGVEVVEFDILNSRDVM 338
P + L S P + +GA R++ + L ASRGV+ L+ DV+
Sbjct: 221 PLISQLATSASKVPLWLCHGQGADVERKQAWEGLGARLLPCASRGVQ------LDPHDVL 274
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM--VEM 396
+ G + E G LAAS ++ L+ ++ F A IG + P+ + LG+ +E
Sbjct: 275 QQLGAAGLTRVFCEGGSALAASLLAFDLVDELIGFTAGLGIGAEGLPS-IGALGLHRLEA 333
Query: 397 SQALDLIDICYEQVGPDML 415
+ DLI+ C VG D++
Sbjct: 334 ANRFDLIETC--PVGADVM 350
>gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 369
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 175/371 (47%), Gaps = 33/371 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ D Y+ RA ++A + G +P+P G +I GK+ GEG+ G AEV A+
Sbjct: 3 KNSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKD-GKIIGEGWHKKFGGPHAEVWALNE 61
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+ +EP G + +++AGI R VV +P + G+ ++ + +
Sbjct: 62 AGENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V LG ++E+ K +N +++P+ K +TLD
Sbjct: 122 GIEVE-LG------VLEKEAKE---INKIFFKYIENKIPYLFLKCGITLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------G 274
GKIA +G + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 --GKIATRNGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIE 219
Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKYLASRGVEV-VEFDI 331
P R+V+ L P E + +D I+VT + K +KY + + +E I
Sbjct: 220 KRNPFRVVIDPNLESPIEGKFLNFNDGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKI 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+D+++ G S+L E G L ++A ++ F+APKIIG +A ++
Sbjct: 280 FKIQDILKELGKLGIDSVLLEGGSGLISTAFKENIVDAGEIFIAPKIIGDSSAIPFINGF 339
Query: 392 GMVEMSQALDL 402
M L
Sbjct: 340 NFDSMEDVFKL 350
>gi|427736610|ref|YP_007056154.1| hypothetical protein Riv7116_3134 [Rivularia sp. PCC 7116]
gi|427371651|gb|AFY55607.1| hypothetical protein Riv7116_3134 [Rivularia sp. PCC 7116]
Length = 155
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFS H I+M + W++VEHYYQA KF G D ++ + I
Sbjct: 3 IYFYKVWQPYGCFSNFSLHSIEM----HNTLWATVEHYYQAQKFAGSPD---EEIIPIIH 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A +PEEAA LGR RQ +RSDWE VK IM A+ KF + + +LLSTG +
Sbjct: 56 QASTPEEAAALGRCSSRQ----MRSDWELVKTQIMREAVLNKFLTHHDIRDILLSTGDRL 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
LVE SP D FWG G G N+LG++LM +R E
Sbjct: 112 LVEDSPRDYFWGCGANKTGQNHLGQILMSVREEL 145
>gi|170078553|ref|YP_001735191.1| hypothetical protein SYNPCC7002_A1948 [Synechococcus sp. PCC 7002]
gi|169886222|gb|ACA99935.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length = 154
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 11/154 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK DPYG FSNFS HPI ++ W +VEH+YQAHKF + QD ++KI+
Sbjct: 9 IYFYKAHDPYGCFSNFSLHPIHCEALD----WPTVEHFYQAHKFLPTHQ---QDLIDKIR 61
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A +PE AA LGR QHP R DWE +K +M++ + KF +P + +LL+TG +
Sbjct: 62 AASTPEIAAALGRD--PQHPK--RPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAA 117
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
++E SP D +WG G +G G NYLG++LM++RS+
Sbjct: 118 IIENSPVDYYWGCGADGSGRNYLGKVLMRVRSQL 151
>gi|444921114|ref|ZP_21240952.1| Riboflavin biosynthesis protein RibD [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507850|gb|ELV08024.1| Riboflavin biosynthesis protein RibD [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 368
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 183/362 (50%), Gaps = 33/362 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ RA +A G SP+P G +I S GK+ GEG+ GT AEV A+
Sbjct: 8 DLRFLARAVALATVPIGAVSPNPYVGAVIVKS-GKIIGEGFHAKAGTAHAEVVAIANATE 66
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+++EP CH T A+++AGI RVV +P ++ G+ L++ G+
Sbjct: 67 STEGATIYVSLEPC-CHHGKTGPCTEAILKAGIARVVYATEDPNPNVAGRGKAFLQAHGI 125
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + +D ++ I N H ++ F K ++LD
Sbjct: 126 EV-ICADDPTARAI----------NRIFFHNQLTQSTFVTLKAGLSLD------------ 162
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH-TPMRI 281
GKIA+ +G + WI+ + +R + +LR DA+++G T+ D+P LT R G + P+RI
Sbjct: 163 GKIASKTGDSQWITCQAARRKAHELRAMHDAILIGKRTLLNDDPALTVRLEGDYRNPVRI 222
Query: 282 VLTQTLNLPEEAN--LWDVSDAPTIVVTQRGARRK--FQKYLASRGVEVVEFDILNSRDV 337
VL + + AN +++ + A T+++ A + L ++GV + ++ +
Sbjct: 223 VLLRNFDGIRHANYQIFETTAAKTLIIHPNTALMDDALKADLTAKGVMIHALPAIDPATL 282
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ Y +++G +S+L E G ++ + +S+G + ++ F P++I G +AP+ G+ ++S
Sbjct: 283 LSYLYEQGIMSVLLEGGSSIYNAFLSAGKVDELALFYGPRLI-GDDAPSLWDHSGITQLS 341
Query: 398 QA 399
A
Sbjct: 342 DA 343
>gi|418170409|ref|ZP_12807039.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19451]
gi|353838703|gb|EHE18780.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA19451]
Length = 360
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 179/375 (47%), Gaps = 33/375 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K AG+ +P+P G +I + G+GY G AE A++ G
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGSHAERNALKNCRESPVG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L LQV V
Sbjct: 60 ATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTV 118
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E CL + T VP+ KYAMT+D GKIA
Sbjct: 119 -------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMTID------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 157 TKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTH 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYF 341
L P + + + D T + T + K + Y + G E++ + ++ +M++
Sbjct: 217 LRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSLMQHL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ + A+
Sbjct: 276 GNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPNDAIR 334
Query: 402 LIDICYEQVGPDMLI 416
L + Q+G D LI
Sbjct: 335 LKPYAFSQIGNDYLI 349
>gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115]
gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti
VCD115]
Length = 368
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 184/395 (46%), Gaps = 53/395 (13%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A + A + G TSP+P GC+I G+V G G+ G AEV A+ G
Sbjct: 8 DTEYMRLALNEAARGMGRTSPNPPVGCVI-VRDGQVVGRGFHPRAGEPHAEVFALREAGE 66
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+ RGATAY+ +EP G + ALV AG+++VV+ +P + GQ LR G++
Sbjct: 67 YARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIE 126
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++G + + ++A L++ A P+ ++KYAMTLD G
Sbjct: 127 V-IVGVAEEEALRQQAGFRSLVMRA---------RPWVIYKYAMTLD------------G 164
Query: 224 KIAA--SSGHA---AWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHT 277
K+AA +SG ++ SR RV R D + VG TV D+P LT R GG
Sbjct: 165 KVAALDASGRGEANGLVTGLASRARVMAWRNEVDGIAVGSGTVITDDPLLTTRGVEGGRD 224
Query: 278 PMRIVLTQTLNLPEEANLWD----VSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
P +V A + V AP + +++ A Y + E LN
Sbjct: 225 PRPVVFDGQGRTSASARVIRPGAVVVTAPGMDMSRHEAAGAQVIYATQPSEALAELGRLN 284
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP--TPVSEL 391
+ ++ E G TLA S + +GL+ +V AFVAPK++G P PV
Sbjct: 285 ------------FSTLFVEGGPTLAGSLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVR-- 330
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDL 426
M +A L D+ +E +GPD+LI G L IP L
Sbjct: 331 ---PMHEAQVLRDVTFESLGPDLLIRGLLNDIPRL 362
>gi|365873644|ref|ZP_09413177.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio velox DSM
12556]
gi|363983731|gb|EHM09938.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio velox DSM
12556]
Length = 377
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 177/384 (46%), Gaps = 32/384 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R A +A + SP+P GC++ KV G GY G AEV+A+ R
Sbjct: 21 FMRMALSLAARGGVSVSPNPKVGCVLVRDE-KVVGIGYHRRYGGPHAEVEALAMARDKAR 79
Query: 108 GATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+TAY+ +EP HG + L +AG++RVV G R+P + G+ +R L S G V V
Sbjct: 80 GSTAYVTLEPCAHHGKTPPCAPRLAEAGVSRVVYGFRDPNPKVNGEGLRILESSG--VEV 137
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+G L+ + C +N I R T P+ K A+++D G
Sbjct: 138 IGPVLE--------RDCKWINRGFIRRITLGRPWVTLKGALSVD------------GTAC 177
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
SG + WI+ +R + LR DAV+VG NTV D+P LT R G +P ++VL
Sbjct: 178 LDSGESKWITGPMARQKAHLLRAEHDAVLVGINTVMNDDPELTVRALDGESPKKVVLDGH 237
Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYFH 342
L +P EA + + IV T + A + L + GV +++ +L+ V+
Sbjct: 238 LRIPLEAKV--LKGGERIVFTSQEAPMEKLTCLRNMGVTLIQVPSVGGMLDLSQVLLELG 295
Query: 343 DRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
G ++L E G + + + SGL V FVAP I+G + + +++
Sbjct: 296 RLGVNNLLVEGGARVLGAFVDSGLGDMVSLFVAPSILG--RGLQIFESFAIQGLGSRVEI 353
Query: 403 IDICYEQVGPDMLISGFLQPIPDL 426
D Q G D+ + G L+ P L
Sbjct: 354 TDHMVRQAGHDLWLEGVLRCSPAL 377
>gi|422640736|ref|ZP_16704162.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
gi|440742672|ref|ZP_20921995.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP39023]
gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
gi|440376976|gb|ELQ13633.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP39023]
Length = 378
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 184/389 (47%), Gaps = 48/389 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+ RA ++A K T P+P GC+I G++ GEG+ G AEV A+
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVI-VREGRIVGEGWHVRAGEPHAEVHALRQA 65
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G RGATAY+ +EP G + AL++AG+TRVV +++P + G+ + L + G
Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNAG 125
Query: 162 LQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V Q ++E EAR +N + R + +P+ K AM+LD
Sbjct: 126 IGV-------QCGVLESEARA----LNKGFLKRMETGLPYVRVKMAMSLD---------- 164
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------- 271
G+ A +SG + WI+ +R V LR +S V+ G +TV D RLT R
Sbjct: 165 --GRTAMASGESQWITGPEARSAVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAE 222
Query: 272 ---HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A + A + AR ++Q+ G E++
Sbjct: 223 LTSLAAARPPLRVLIDGRLRVPLDAPFFQAGSALVVTCAAASARGRYQE----EGHEMLA 278
Query: 329 F----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
++ R +M RG +L E G LA + GL+ + F+A K +G ++
Sbjct: 279 LADSAGHVDLRRLMGELAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLG--SS 336
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPD 413
P+ +L + +MS+AL+L + VG D
Sbjct: 337 ARPLLDLPLAQMSEALELNIVEMRAVGND 365
>gi|386855369|ref|YP_006259546.1| Riboflavin biosynthesis protein RibD [Deinococcus gobiensis I-0]
gi|379998898|gb|AFD24088.1| Riboflavin biosynthesis protein RibD [Deinococcus gobiensis I-0]
Length = 368
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 191/388 (49%), Gaps = 46/388 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R A A + +P+P GC++ G+V G G+ G AEV A+ A G R
Sbjct: 12 HMRLALREAARGQPTAAPNPPVGCVLVRG-GEVVGSGFHVRAGEPHAEVLALRAAGEQAR 70
Query: 108 GATAYLNMEPGDC-HGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
GATAY+ +EP C H T AL+ AG+ RVVV +P + GQ V LR+ G+ V
Sbjct: 71 GATAYVTLEP--CAHTGRTPPCADALIAAGVARVVVAALDPDPRVAGQGVARLRAAGVDV 128
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V + +EA + A R T+ P+ +KYAMTLD G+
Sbjct: 129 TV------GVLEDEATRQ----QAGFRMRVTAGRPWVAYKYAMTLD------------GR 166
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHTPM 279
+AA ++S + RV R +DAV VG TV D+PRLT R GGH P
Sbjct: 167 VAAQGEGRGAVTSAPAWARVMAWRAEADAVAVGSGTVLADDPRLTVRGPEDGAAGGHDPR 226
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA-RRKFQKYLASRGVEVVEFDILNSRDVM 338
+V ++ +P A ++++T G R +++ RGV V+ L +
Sbjct: 227 PVVFDRSGRVPPTARALRPG---SVLITAPGTDARPYEE----RGVTVLRVGSLPG--AL 277
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
D G ++L E G TLA + ++GL+ +V A VAPK++G A P L M+Q
Sbjct: 278 RALGDLGLNTLLLEGGPTLATAFFAAGLVDEVRALVAPKVLG---AGLPPLALAPRPMAQ 334
Query: 399 ALDLIDICYEQVGPDMLISGFLQPIPDL 426
A +L D+ E +GPD+L+SG ++P+P L
Sbjct: 335 AHELSDLQIEVLGPDLLVSGLVRPVPRL 362
>gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 393
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 54/396 (13%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+R D+A ++ G TSP+P GC+I G++ G G+ G AEV A+ G
Sbjct: 28 DAFYMRMCVDLARQAVGKTSPNPIVGCVI-VKDGRIVGRGFHPKAGEPHAEVFALREAGP 86
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+++EP + +G S ALV+A + RVVVG+ +P + G+ ++ LR+ G++
Sbjct: 87 LAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAGIE 146
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V+G +EE CL N +HR + PF +Y+M++D G
Sbjct: 147 V-VVG-------VEETL--CLKANESFMHRMATGRPFVTLRYSMSMD--------GGFLG 188
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+ S+ S L +DAVV+ V D+P L + G P+R++L
Sbjct: 189 NMGLSNAQGGLYSK---------LLQENDAVVITDAAVL-DDPDLLSSEPGAKQPLRVIL 238
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGA-----RRK------FQKYLASRGVEVVEFDIL 332
++L+LP E+ ++D S A T+V+ + + +RK + L + GV+VV + L
Sbjct: 239 ARSLDLPVESKVFDTSYAKTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDL 298
Query: 333 NSRDVMEYFHDRGYLSILWECGGT--------LAASAISSGLIHKVFAFVAPKIIGGKNA 384
+V+ + G S+L + G L A+ KV VAP I G+N
Sbjct: 299 TLENVLSVCYQLGATSVLLDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAP-IFLGENR 357
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
P + S + L + VG D++I G+
Sbjct: 358 TEPCFRMD----SDLVKLERVSSHMVGQDVVIEGYF 389
>gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
JJ]
gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
JJ]
Length = 380
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 182/391 (46%), Gaps = 43/391 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV---EA 101
DA ++ RA ++A++ GF P+P G ++ G VA EG+ G AEV+ + E
Sbjct: 5 DADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVA-EGWHKVFGGPHAEVECLHDAER 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G G T Y+ +EP + G S L+ AGI RVVVG +P + G LR +
Sbjct: 64 KGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDP-NPVAGGGAALLRQE 122
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V ++E C A I T P+ K AMTLD
Sbjct: 123 GVEVTV-------GVLE---SQCREAVADFITWQTMGRPYVTVKLAMTLD---------- 162
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----HGGGH 276
G+IA +G AAW+S + SR+RV +R S AV+VGG T+R DNPRL+ R H H
Sbjct: 163 --GRIATRTGDAAWVSCEASRERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAH 220
Query: 277 TPMRIVLTQTLNLPE-EANLWDVSDAPT---IVVTQRGARRKFQKYLASRGVEVVEFDIL 332
P + + T LP+ +A L + D PT I+ + A L GV V
Sbjct: 221 NPQPLGVVVTRRLPDADAQLALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRA 280
Query: 333 NSRDVMEYFHDRGYL-------SILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
+ + ++ L ++L E GG LAAS + GL ++ F APK++G A
Sbjct: 281 ANGEGLDLAAGLARLRQEARVFALLCEGGGELAASLLGQGLADELVIFYAPKVLGDAAAV 340
Query: 386 TPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
S L + M+ A L E VG D+++
Sbjct: 341 PGFSGLTVPRMADAAQLRFTSMESVGTDVMV 371
>gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
AMB-1]
gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
AMB-1]
Length = 375
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 179/380 (47%), Gaps = 33/380 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A +A + G P+P GC+I G+V G G+ G AE +A+ GS
Sbjct: 14 DLGHMRAALALARRGLGTVWPNPAVGCVI-VKDGRVVGRGWTQPGGRPHAETEALAMAGS 72
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP HG ALV AG++RVVV +++P + G+ V LR G+
Sbjct: 73 AALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGIP 132
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + EA + +NA R + P K A TLD G
Sbjct: 133 V------TEGVLHAEAAE----LNAGFFLRINTGRPLVTLKLATTLD------------G 170
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--GHTPMRI 281
+IA +G + WI+ +R LR +DA++VG T D+P LT R G +P+R+
Sbjct: 171 RIATHTGESRWITGDQARSAAHLLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRV 230
Query: 282 VLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD-----ILNSR 335
V+ L LP + L +D PT ++T ++ GV+VVE ++
Sbjct: 231 VVDGRLRLPLTSRLVATANDVPTWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLE 290
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
++ + G +L E G L+A+ + +GL+ ++ F AP+++GG P VS G+
Sbjct: 291 LALQALGESGVTRVLVEGGAHLSAALLRAGLVDRMVWFRAPRLMGGDGLPAAVS-FGIDH 349
Query: 396 MSQALDLIDICYEQVGPDML 415
++Q + VG D++
Sbjct: 350 LAQTPHFERVEIRPVGDDVM 369
>gi|423138082|ref|ZP_17125725.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371958644|gb|EHO76353.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 370
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 176/373 (47%), Gaps = 35/373 (9%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
+ D Y+ RA ++A + G +P+P G +I GK+ GEG+ G AEV A+
Sbjct: 2 DKNSDEKYMARAIELAKRGIGGVNPNPLVGAVIVKD-GKIIGEGWHKKFGGPHAEVWALN 60
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G GAT Y+ +EP G + +V+ GI R VV +P + G+ ++ + +
Sbjct: 61 EAGENAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIIEN 120
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V LG ++E+ K VN + +++P+ K +TLD
Sbjct: 121 AGIEVK-LG------VLEKEAKD---VNKIFLKYIENKIPYLFLKCGITLD--------- 161
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------ 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ---GKIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGI 218
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEF 329
P R+V+ L P EA + +D I+VT R K ++Y L +R + +E
Sbjct: 219 EKRNPFRVVIDPNLESPIEAKFLNFNDEKAIIVTSNDNRELEKIKEYENLGTRFI-FLEG 277
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
I +++++ S+L E G L ++A +I F+APKIIG +A ++
Sbjct: 278 KIFKMKNILKELGKLEIDSVLLEGGSGLISTAFKENVIDAGEIFIAPKIIGDNSAIPFIN 337
Query: 390 ELGMVEMSQALDL 402
M L
Sbjct: 338 GFNFDNMEDVFKL 350
>gi|349575170|ref|ZP_08887091.1| riboflavin biosynthesis protein RibD [Neisseria shayeganii 871]
gi|348013178|gb|EGY52101.1| riboflavin biosynthesis protein RibD [Neisseria shayeganii 871]
Length = 370
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 171/342 (50%), Gaps = 30/342 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D A++R A +A++ TSP+P GC+IA G++ G+G+ G AEV A+ G
Sbjct: 9 QDHAHMRHALALAEQGRFSTSPNPRVGCVIALG-GQIIGQGFHLRAGEPHAEVHALRQAG 67
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
S RGATAY+ +EP HG +AL+QAG+ RVV +R+P + G+ + LR G+
Sbjct: 68 SAARGATAYVTLEPCAHHGRTPPCAAALIQAGVARVVAAMRDPNPLVAGKGLAMLREAGI 127
Query: 163 QVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
QV + E EAR+ +N + R PF K A +LD
Sbjct: 128 QV-------ACGLYEAEARE----LNRGFLSRIERGRPFVKLKTAASLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMR 280
GK A + G + WI+ +R V LR S AV+ G TV DNPRL R P+R
Sbjct: 166 -GKTALADGRSQWITGPAARQNVQTLRAESCAVLTGVGTVLADNPRLNVRSFPTLRQPLR 224
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV-VEFDILNSRD-VM 338
IVL L P ++L A T+++T +F + A R + + D+ S ++
Sbjct: 225 IVLDSRLRTPVHSHLIQDGQA-TLILTAAEDDGRFAAFPAVRLHRLPTDADVRPSLPALL 283
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
Y ++G ++ E G TL + +++ L+ ++ + APKI+G
Sbjct: 284 AYLAEQGIGELMLEAGHTLHTAFLAADLVDEIVCYQAPKILG 325
>gi|398845171|ref|ZP_10602214.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM84]
gi|398253825|gb|EJN38939.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM84]
Length = 376
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 181/398 (45%), Gaps = 50/398 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ RA ++A K T P+P GC+I G+V GEG+ G AEV A+ G
Sbjct: 9 DAHYMARALELARKGVYTTHPNPRVGCVI-VRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA AY+ +EP HG + ALV+AG+ RVV +++P + GQ +R L G++
Sbjct: 68 RARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLADAGIE 127
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR +N + R +PF K AM+LD
Sbjct: 128 V-------ASGVLEAEARA----LNPGFLKRMEHGLPFVRAKLAMSLD------------ 164
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-------- 274
G+ A +SG + WI+ +R V LR RS V+ +V DN R+T R
Sbjct: 165 GRTAMASGESQWITGPAARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDEETT 224
Query: 275 ----GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
TP+R+++ L LP +A + P +VVT G ++ A G E++
Sbjct: 225 ALALSRTPLRVLIDGHLRLPLDAPFFQAG--PALVVTAMGDDPRY----AEAGHELLNLP 278
Query: 331 ILNS----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
N + +M+ RG IL E G L + GLI + FVA +G +
Sbjct: 279 GSNGHVDLQALMQVLAARGVNEILLEAGAGLVGAFAQHGLIDEYQLFVAGTFLGSQA--R 336
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
P+ + + +MS+A L VG D ++ P P
Sbjct: 337 PLLDWPLSKMSEAPRLKITEMRAVGDDWRVTAIPLPAP 374
>gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
Length = 449
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 191/389 (49%), Gaps = 44/389 (11%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A D A +RRA ++A + G TSP+P GC+I ++G++AG GY G AEV A+
Sbjct: 62 VATAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHAL 121
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
A G+ RG TAY+ +EP D G S AL+ AGITRVV + +P G A LR
Sbjct: 122 RAAGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASGGA-GTLR 180
Query: 159 SQGLQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
+ G++V +LG + ++ VNA + P V+KYA TLD
Sbjct: 181 AAGVRVECGLLGPEAEA------------VNAAWLTSVRLGRPQVVWKYAATLD------ 222
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGG 275
G+IAA + WI+S +R V LR +DAVV+G T+R D+P+L R G
Sbjct: 223 ------GRIAAEDRSSRWITSPEARADVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGA 276
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
P+R+VL + A + D APT++ GA GV+ V
Sbjct: 277 VQPLRVVLDSRATVTPAARVLD-DAAPTLIAVGEGADTGHLP-----GVDTVVLPAAPGP 330
Query: 332 ---LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L+ ++ RG S+L E G TLA + +++ + KV ++AP ++G A
Sbjct: 331 GRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVAARAVDKVIGYLAPALLGAGPAALGG 390
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLIS 417
+ + + + LDL + ++GPD+ I+
Sbjct: 391 AGISTIGEALRLDLTESV--RIGPDLRIT 417
>gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
Length = 388
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 191/389 (49%), Gaps = 44/389 (11%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A D A +RRA ++A + G TSP+P GC+I ++G++AG GY G AEV A+
Sbjct: 1 MATAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
A G+ RG TAY+ +EP D G S AL+ AGITRVV + +P G A LR
Sbjct: 61 RAAGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASGGA-GTLR 119
Query: 159 SQGLQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGV 216
+ G++V +LG + ++ VNA + P V+KYA TLD
Sbjct: 120 AAGVRVECGLLGPEAEA------------VNAAWLTSVRLGRPQVVWKYAATLD------ 161
Query: 217 LSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGG 275
G+IAA + WI+S +R V LR +DAVV+G T+R D+P+L R G
Sbjct: 162 ------GRIAAEDRSSRWITSPEARADVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGA 215
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI---- 331
P+R+VL + A + D APT++ GA GV+ V
Sbjct: 216 VQPLRVVLDSRATVTPAARVLD-DAAPTLIAVGEGADTGHLP-----GVDTVVLPAAPGP 269
Query: 332 ---LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L+ ++ RG S+L E G TLA + +++ + KV ++AP ++G A
Sbjct: 270 GRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVAARAVDKVIGYLAPALLGAGPAALGG 329
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLIS 417
+ + + + LDL + ++GPD+ I+
Sbjct: 330 AGISTIGEALRLDLTESV--RIGPDLRIT 356
>gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
Length = 363
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 176/377 (46%), Gaps = 27/377 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
++ Y++ A +A G T+P+P G ++ G++ G G G AEV A+ G
Sbjct: 2 QEQEYMKLALSLAKAGKGQTAPNPAVGAVVVKD-GEIVGMGAHLKAGDPHAEVHAIRQAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVSAL-VQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
S GA Y+ +EP G + L V+ + RV + +P + G+ + L G+
Sbjct: 61 SKAEGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V + K L +NA H ++ P+ K A+TLD
Sbjct: 121 EV----------VTGICEKEALELNAHFFHFIQTKTPYVTLKSAVTLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
GK AA +G + WI+S+ SR V R DA++VG NTV DNP LT R GG P+R+
Sbjct: 159 GKTAAYTGDSKWITSEESRLDVHKYRHHHDAILVGVNTVINDNPLLTTRLPRGGKNPIRV 218
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVME 339
VL L +P E+++ ++ A TI+ A + + L ++GV V + + L + V++
Sbjct: 219 VLDSHLRIPLESDILNIEHAKTIIFCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQ 278
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ S+ E G + S + +V ++APK++GG A T G +++
Sbjct: 279 RLGELNVTSLFVEGGSAIHFSFLKEKAYQEVVIYMAPKLVGGSEAFTSFGGHGFPSIAEG 338
Query: 400 LDLIDICYEQVGPDMLI 416
+L E++G D+ I
Sbjct: 339 DELEFSSIEKIGKDIKI 355
>gi|428781656|ref|YP_007173442.1| hypothetical protein Dacsa_3605 [Dactylococcopsis salina PCC 8305]
gi|428695935|gb|AFZ52085.1| hypothetical protein Dacsa_3605 [Dactylococcopsis salina PCC 8305]
Length = 150
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 11/152 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK PYG FSNFSPHPI + + W +VEHYYQAHK G D Q +E I+
Sbjct: 3 IYFYKADQPYGCFSNFSPHPITI----NRIPWQTVEHYYQAHKLLGTPD---QPLMEVIR 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A++PE+AA +GR R +R DW + K ++M+ A+ KF +P + +LL TG
Sbjct: 56 QAETPEQAASIGRDRART----IRVDWNTAKQEVMWTAVLTKFLTHPDIQRVLLETGEES 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRS 602
L+E SP D +WG G++G G N LG++LM++RS
Sbjct: 112 LIENSPKDYYWGCGKDGSGQNQLGKMLMRVRS 143
>gi|427732545|ref|YP_007078782.1| hypothetical protein Nos7524_5469 [Nostoc sp. PCC 7524]
gi|427368464|gb|AFY51185.1| hypothetical protein Nos7524_5469 [Nostoc sp. PCC 7524]
Length = 267
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 95/153 (62%), Gaps = 11/153 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPH I ++ G WS+VEHYYQA KF G D + I+
Sbjct: 111 IYFYKVWQPYGCFSNFSPHYI---EIQG-TYWSTVEHYYQAQKFVGSVDAV---IIPLIR 163
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A++PEEAA LGR RQ +R DW+ VK +M A+ KF + + +LLSTG V
Sbjct: 164 AAQTPEEAAALGRCSSRQ----LRPDWDVVKTQVMREAVFTKFLTHADIREILLSTGNEV 219
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
LVE SP D FWG G + G N+LG++LM +R +
Sbjct: 220 LVENSPTDYFWGCGTDKTGQNHLGKILMSVRED 252
>gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13]
Length = 367
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 177/381 (46%), Gaps = 33/381 (8%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE-AG 102
+D Y++ A D+A ++ G TSP+P G ++ + G++ G G G AEV A++ AG
Sbjct: 2 DDQYYMKFAIDLAKRATGQTSPNPVVGSVVVKN-GEIVGFGAHLRAGEAHAEVNAIQMAG 60
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G+T Y+ +EP G S L+Q+ ++RVV+ +P + G+ + LR G
Sbjct: 61 VDKANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAG 120
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++V LG + EE L +N H + PF K A +LD
Sbjct: 121 IEVE-LG------VCEE---EALALNQVFFHHIKTGKPFVTLKTAASLD----------- 159
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMR 280
GK A + WI+ SR V R + DA++VG TV D+P L R GG P+R
Sbjct: 160 -GKTATHRNESKWITGPDSRLDVHQYRHQHDAILVGVGTVLADDPSLDTRLPNGGKNPIR 218
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV--- 337
I+L L P ++ + APT +VT G++ +K G E V L V
Sbjct: 219 IILDSHLRTPLDSKVLTDGKAPTWIVT--GSKPDLEKMAFLEGQEGVRVFTLPMEKVEVN 276
Query: 338 --MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVE 395
+ + S+ E G T+ S + I ++ ++APK+IGGK APT V G
Sbjct: 277 ELLSLLGEEEITSLFVEGGATVNGSFLKEKAIQQLITYIAPKLIGGKAAPTLVGGEGFAT 336
Query: 396 MSQALDLIDICYEQVGPDMLI 416
M + ++ ++GPD+ I
Sbjct: 337 MDEVMEFEIKEVTKIGPDLKI 357
>gi|354566693|ref|ZP_08985864.1| Conserved hypothetical protein CHP02464 [Fischerella sp. JSC-11]
gi|353544352|gb|EHC13806.1| Conserved hypothetical protein CHP02464 [Fischerella sp. JSC-11]
Length = 156
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 96/154 (62%), Gaps = 11/154 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK ++PYG FSNFSPH I++ ++ W +VEHYYQA KF G D + I
Sbjct: 3 IYFYKAYEPYGCFSNFSPHSIKIDGIH----WRTVEHYYQAQKFVGTTDAV---IIPVIH 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
++PEEAA LGR R+ VR DWE VK +IM +A+ KF + + +LL+TG +
Sbjct: 56 AVETPEEAAALGRCCTRK----VRLDWEIVKTNIMRQAVLKKFLTHADIREVLLTTGDQL 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
LVE SP D FWG G + G N+LG++LM +R E
Sbjct: 112 LVENSPRDYFWGCGADHTGQNHLGKILMSVREEI 145
>gi|345302670|ref|YP_004824572.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus
SG0.5JP17-172]
gi|345111903|gb|AEN72735.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus
SG0.5JP17-172]
Length = 393
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-- 101
E ++ R ++A + AG SP+P G ++ + G+V EG+ G AE A+E
Sbjct: 21 EAERFMVRCLELAFRGAGRVSPNPMVGAVLVDTDGQVLAEGWHERYGGPHAERMAIEEAL 80
Query: 102 ---GGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G R AT Y+N+EP +G + ++ GI RVVVG+ +P + G+ + L
Sbjct: 81 RRHGSEALRRATLYVNLEPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARL 140
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R+ G+QV V ++E A C N +H + P K A TLD
Sbjct: 141 RAHGVQVKV-------GVLEAA---CRRFNEAFVHHVETGRPLVTLKMAQTLD------- 183
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT 277
G +A +G + WIS + +R V R D V+VG T D+P LT RH G
Sbjct: 184 -----GFVATRTGQSRWISGERARKLVHRWRAVLDGVLVGSGTAAADDPALTVRHVEGRQ 238
Query: 278 PMRIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
P+RIVL +T +LP L+ D A T+ + GAR + L G V + +
Sbjct: 239 PVRIVLDRTGSLPPTLRLFTDEQAARTLAIVGPGARPAYAASLLQAGGRVWTLPLRDGHL 298
Query: 337 VMEYFHD----------RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
+E + R S+L E G LA + GL+ + F F+AP++ G+ P
Sbjct: 299 DLEALLERLGREGGPDGRPLQSLLVEAGPRLATALFRQGLVDRFFLFIAPRLF-GEGVPL 357
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGF 419
+++LG+ + + + +VG D+L G+
Sbjct: 358 -LNDLGVRAVDEGPRFEAHRWVEVGEDLLFLGY 389
>gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
Length = 384
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 50/393 (12%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ RA +A T+P+P GC++ G+V GEG+ G AE+ A+ G R
Sbjct: 10 WMARALRLARHGLYTTAPNPRVGCVL-VKEGRVIGEGWHERAGEPHAEIHALRNAGEAAR 68
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP G + ALV+AG+ RVVV +R+P + G+ + LR G++V
Sbjct: 69 GATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLRQAGIEVE- 127
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + EA L N+ I R PF K AM+LD G+ A
Sbjct: 128 -------EGVLEAEAHAL--NSGFIARMARGRPFVRMKMAMSLD------------GRTA 166
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG----------GGH 276
SG + WI+ +R V LR RS V+ G +V DN RLT R
Sbjct: 167 MRSGESQWITGPCARREVQRLRARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASR 226
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDI 331
PMR+V+ L LP A T+V T G + ++ L G EVV E
Sbjct: 227 QPMRVVVDSRLRLPLAAACLR-EPGRTLVATVDGHDDEHREKLEQAGAEVVVLPAEEGGR 285
Query: 332 LNSRDVMEYF--HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
++ ++ Y H+ +L E G TLA + + +GL+ ++ FVAP ++GG+ P+
Sbjct: 286 VDLEALLSYLASHEEAN-EVLLETGATLAGAMLDAGLVDEMQLFVAPTLLGGEA--RPLF 342
Query: 390 EL-GMVEMSQA--LDLIDICYEQVGPDMLISGF 419
EL G+ M + LD+ DI VG D I+
Sbjct: 343 ELPGLTRMDEQRPLDIRDI--RAVGDDWRITAV 373
>gi|409400251|ref|ZP_11250369.1| riboflavin biosynthesis protein ribD [Acidocella sp. MX-AZ02]
gi|409130728|gb|EKN00473.1| riboflavin biosynthesis protein ribD [Acidocella sp. MX-AZ02]
Length = 365
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 186/389 (47%), Gaps = 36/389 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A +A + G T+P+P+ GC+I +V G G+ A G AEV A+ G+
Sbjct: 3 DQDFMRAALAMARRGLGQTAPNPSVGCIIVNQD-RVVGRGFTSAGGRPHAEVNALAQAGN 61
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RG TAY+ +EP + G AL+QAGI+RVV+G ++P + G + LR+ G+
Sbjct: 62 AARGGTAYVTLEPCNFTGKSGPCTEALIQAGISRVVLGAQDPHPKVNGAGIVRLRAAGIS 121
Query: 164 VH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
V VL + ++ I A ++ R P K A +LD
Sbjct: 122 VSEGVLAAECEASIAGFA----------MVQRQGR--PLLRLKLASSLD----------- 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP--M 279
G+IA + G + WI+ + +R LRG DA++VG TV D+P LT R G +
Sbjct: 159 -GRIATAKGESKWITGEPARQAAHMLRGTHDAIMVGVGTVLEDDPELTCRIEGYRCTDLV 217
Query: 280 RIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNS 334
R+V+ L P + L + P ++ + GA + K L GV+++E ++
Sbjct: 218 RVVVDSHLRTPLLSKLVRGAARHPLWILHRNGADKLRAKALVQAGVKLIELPAASIGVDL 277
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
M+ G S+L E GGTLAA+ + + L+ ++ F AP +IGG P G+
Sbjct: 278 VAAMKALAQNGLTSVLAEGGGTLAAALLRANLVDRLSWFHAPCVIGGDGLPA-AQAFGIA 336
Query: 395 EMSQALDLIDICYEQVGPDMLISGFLQPI 423
++Q I ++G DML QP+
Sbjct: 337 SLAQMPRFTQISSRRLGADMLTDFIRQPV 365
>gi|408826115|ref|ZP_11211005.1| riboflavin biosynthesis protein RibD [Streptomyces somaliensis DSM
40738]
Length = 367
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 191/397 (48%), Gaps = 47/397 (11%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A D +RRA +A + G TSP+P GC++ ++G G GY G AEV+A+
Sbjct: 1 MATASDTTAMRRAVALAARGLGSTSPNPVVGCVVLDASGHEVGSGYHERAGGPHAEVRAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAV 154
G RG TAY+ +EP C +HT AL++AGI RVV + +P RG A
Sbjct: 61 REAGVLARGGTAYVTLEP--C--NHTGRTGPCAQALIEAGIARVVYAVADPDPQARGGA- 115
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
LR+ G++V E EA + L + L P +KYA TLD
Sbjct: 116 ETLRAAGVEV----EGGVLAEEAEAGNAAWLTSVRLAR------PHVRWKYAATLD---- 161
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
G++AA+ G + WI+S +R V LR +DAVVVG T R D+P L R
Sbjct: 162 --------GRVAAADGTSRWITSPEARADVHRLRAEADAVVVGSGTARTDDPHLAVRGLA 213
Query: 275 GHTPMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
P+R+V+ T+ + A + D APT++ A +LA G +VV
Sbjct: 214 AVQPLRVVVDTEATAVAPGARVLD-DAAPTLIAV---AEDAAADHLA--GTDVVRLPRAA 267
Query: 332 ----LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
L+ ++ H+RG S+L E G TLA + ++G + +V ++AP ++G P
Sbjct: 268 SGRGLSVPALLAALHERGVRSVLLEGGPTLAGAFAAAGAVDEVVGYLAPVLLGA--GPAV 325
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
+ + G+ ++ AL L ++GPD+ ++ +P
Sbjct: 326 LGDAGITTVADALRLRVTDTARLGPDLRVTARPATLP 362
>gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
Ellin428]
gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
Ellin428]
Length = 344
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 56/389 (14%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-- 101
+D ++R A A + G TSP+P G +I + GK+ GY + G AE++A+ A
Sbjct: 2 QDEEFMRAALAEARRGLGQTSPNPAVGAVIVRA-GKIIARGYHHRAGLPHAEIEALRALP 60
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ RGAT Y+ +EP HG V A++ AG RVV+G +P G+ V+ LR
Sbjct: 61 KPALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDT 120
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V + ++E C +NA H +++P + K M+LD
Sbjct: 121 GIAV-------TTDVLE---AECRALNAAFNHWIVTKMPLVIAKAGMSLD---------- 160
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPM 279
G+I G W+++ +R LR + DA+++G T+R+DNPRLT R G P
Sbjct: 161 --GRITRPPGEGQWLTNAVARKDAHRLRSQVDAILIGAETLRQDNPRLTVRGVRGARQPW 218
Query: 280 RIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVM 338
RIV+T++ LP+EA+L+ D T+V ++ + R V+
Sbjct: 219 RIVITRSGKLPKEAHLFTDEHRERTLVYREK-----------------------SLRTVL 255
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
R S++ E GG + A L+ + ++AP + GG V LG+ ++
Sbjct: 256 RDLGKRQITSVMIEGGGGVLGEAFDRRLVQRAHFYLAPLLCGGPA--VVVKGLGVGSNAE 313
Query: 399 ALDLIDICYEQVGPDMLISGFLQ---PIP 424
A + + Y ++G ++ ++G ++ P+P
Sbjct: 314 AATIRNATYTRLGDNLCLTGEVEYPAPVP 342
>gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
Length = 376
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 183/380 (48%), Gaps = 47/380 (12%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC+I G V GEG+ G AEV A+ A G RG
Sbjct: 23 MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82
Query: 109 ATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
TAY+ +EP C +HT ALV AGI RVV + +P G LR+ G+
Sbjct: 83 GTAYVTLEP--C--NHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGA-TLRAAGI- 136
Query: 164 VHVLGEDLQSKII-EEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
D ++ ++ +EA + N + P +KYA TLD
Sbjct: 137 ------DTEAGLLADEAEQG----NTAWLTSVRLGRPHVTWKYAATLD------------ 174
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRI 281
G+ AA G + WI+S SR V LR +DAV+VGG T+R D+P L R G P+R+
Sbjct: 175 GRSAAEDGSSRWITSPESRADVHRLRAEADAVLVGGGTLRADDPHLAVRGVDGAVQPLRV 234
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
L LP A + D + APT++VT A G +V+ + + R +
Sbjct: 235 ALDTRAGLPATARILDDA-APTLIVTGEDADTAHLP-----GTDVLRLPLRDGRLPLGPL 288
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ + RG S+L E G TLA + + +G + +V ++AP ++G A + + + +
Sbjct: 289 LAELYGRGVRSVLLEGGPTLAGAFLEAGAVDRVVGYIAPALLGAGPAALAGAGITNIAHA 348
Query: 398 QALDLIDICYEQVGPDMLIS 417
LD+ + + GPD+ I+
Sbjct: 349 VRLDITEAV--RTGPDLRIT 366
>gi|17232521|ref|NP_489069.1| hypothetical protein all5029 [Nostoc sp. PCC 7120]
gi|17134167|dbj|BAB76728.1| all5029 [Nostoc sp. PCC 7120]
Length = 157
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 11/153 (7%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPH I++ W +VEHYYQA KF G D A + I+
Sbjct: 3 IYFYKVWQPYGCFSNFSPHSIEIQGTY----WLTVEHYYQAQKFVGSVDAA---IIPAIR 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
+K+PEEAA LGR RQ +R DW+ VK +M A+ KF + + +LLSTG +
Sbjct: 56 ASKTPEEAAALGRCTSRQ----LRQDWDLVKTIVMREAVLKKFLTHTDIREILLSTGNEI 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSE 603
LVE S D FWG G + G N+LG++LM +R E
Sbjct: 112 LVEDSSCDYFWGCGADKTGQNHLGKILMSVREE 144
>gi|418131593|ref|ZP_12768470.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11304]
gi|444390656|ref|ZP_21188571.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS70012]
gi|444392290|ref|ZP_21190027.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS81218]
gi|444406026|ref|ZP_21202851.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0009]
gi|444409109|ref|ZP_21205709.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0076]
gi|444417598|ref|ZP_21213628.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0360]
gi|444421791|ref|ZP_21217461.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0446]
gi|353809061|gb|EHD89323.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA11304]
gi|444257119|gb|ELU63457.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS70012]
gi|444263693|gb|ELU69844.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS81218]
gi|444270427|gb|ELU76198.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0009]
gi|444280322|gb|ELU85693.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0076]
gi|444283514|gb|ELU88711.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0360]
gi|444289000|gb|ELU93888.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PNI0446]
Length = 360
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 33/375 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K AG+ +P+P G +I + G+GY G AE A++ G
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRKSPVG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L LQV V
Sbjct: 60 ATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTV 118
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E CL + T VP+ KYAM++D GKIA
Sbjct: 119 -------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 157 TKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTH 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYF 341
L P + + + D T + T + K + Y + G E++ + ++ +M++
Sbjct: 217 LRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSLMQHL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ + A+
Sbjct: 276 GNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPNDAIR 334
Query: 402 LIDICYEQVGPDMLI 416
L + Q+G D LI
Sbjct: 335 LKPYAFSQIGNDYLI 349
>gi|422646401|ref|ZP_16709534.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 381
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 183/389 (47%), Gaps = 48/389 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+ RA ++A K T P+P GC+I G++ GEG+ G AEV A+
Sbjct: 10 ALDVHYMARALELARKGLYSTHPNPRVGCVI-VRDGQIVGEGWHARAGEPHAEVHALRQA 68
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G RGATAY+ +EP G + ALV AG+ RVV +++P + G+ + L + G
Sbjct: 69 GELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNAG 128
Query: 162 LQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ V Q ++E EAR +N + R + P+ K AM+LD
Sbjct: 129 IGV-------QCGVLESEARA----LNKGFLKRMETGRPYVRVKLAMSLD---------- 167
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------- 271
G+ A +SG + WI+ +R V LR +S V+ G +TV DN RLT R
Sbjct: 168 --GRTAMASGESQWITGPEARSAVQRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAE 225
Query: 272 ---HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A + A + AR ++Q+ G E++
Sbjct: 226 MSALAATSPPLRVLIDGRLRVPLDAPFFQAGSALVVTCAAASARGRYQE----EGHEMLA 281
Query: 329 F----DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
++ R +M +RG +L E G LA + GL+ + F+A K +G ++
Sbjct: 282 LADSAGHVDLRKLMGELANRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLG--SS 339
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPD 413
P+ +L + +MS+AL+L + VG D
Sbjct: 340 ARPLLDLPLAQMSEALELQIVEMRAVGND 368
>gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP3-BS71]
gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP3-BS71]
Length = 360
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 33/375 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K AG+ +P+P G +I + G+GY G AE A++ G
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAIIVKDN-HIIGQGYHEFFGGPHAERNALKNCRKSPVG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L LQV V
Sbjct: 60 ATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTV 118
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E CL + T VP+ KYAM++D GKIA
Sbjct: 119 -------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 157 TKTNQSKWITEEEARKHVHQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTH 216
Query: 287 LNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYF 341
L P + + +D T + T + K + Y + G E++ + ++ +M++
Sbjct: 217 LRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSLMQHL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ + A+
Sbjct: 276 GNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLSNDAIR 334
Query: 402 LIDICYEQVGPDMLI 416
L + Q+G D LI
Sbjct: 335 LKPYAFSQIGNDYLI 349
>gi|419954681|ref|ZP_14470817.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri TS44]
gi|387968545|gb|EIK52834.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri TS44]
Length = 368
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 183/390 (46%), Gaps = 53/390 (13%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D A++ RA +A K T P+P GC+I + G++ GEG+ G AEV A+
Sbjct: 3 AADHAWMARALQLAHKGLYSTHPNPRVGCVI-VAAGELVGEGWHVRAGEPHAEVHALRQA 61
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G RGATAY+ +EP HG ALV+AG+ RVV +++P + G+ ++ LRS G
Sbjct: 62 GERARGATAYVTLEPCSHHGRTPPCAEALVRAGVGRVVAAMQDPNPQVAGRGLQLLRSAG 121
Query: 162 LQVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ D+ S ++E EAR+ +N I R S +PF K AM+LD
Sbjct: 122 I-------DVASGVLEAEARE----LNGGFIKRMESGLPFVRAKLAMSLD---------- 160
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG------ 274
G+ A +SG + WI+ +R V LR RS V+ G +TV D RLT R
Sbjct: 161 --GRTAMASGESQWITGPAARAEVQRLRARSSVVLTGADTVLMDAARLTVRGAELGLDVE 218
Query: 275 ------GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA-----RRKFQKYLASRG 323
P+R+++ L +P +A+ + P +V T RR + L G
Sbjct: 219 TTALALQRPPLRVLVDGRLRVPLDASFFQAG--PALVATAVAGCEDIYRRAGHEALVL-G 275
Query: 324 VEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
E V+ L + RG +L E G L + GLI + FVA K +G +
Sbjct: 276 DERVDLPAL-----LRELAVRGANEVLLEAGPRLVGAFARLGLIDEYQLFVAAKFLG--S 328
Query: 384 APTPVSELGMVEMSQALDLIDICYEQVGPD 413
+ P+ EL + MS+A +L + VG D
Sbjct: 329 SARPLLELPLERMSEARELKIVDIRAVGDD 358
>gi|421280227|ref|ZP_15731026.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04672]
gi|444383814|ref|ZP_21181994.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS8106]
gi|395883584|gb|EJG94626.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04672]
gi|444248257|gb|ELU54769.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
PCS8106]
Length = 360
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 33/375 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K AG+ +P+P G +I + G+GY G AE A++ G
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRESPVG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L LQV V
Sbjct: 60 ATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTV 118
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E CL + T VP+ KYAM++D GKIA
Sbjct: 119 -------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 157 TKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTH 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYF 341
L P + + + D T + T + K + Y + G E++ + ++ +M++
Sbjct: 217 LRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSLMQHL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S++ E G + SA+ ++ ++ ++APKI GG +A PV G+ + A+
Sbjct: 276 GNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGG-SAKFPVGGEGISLPNDAIR 334
Query: 402 LIDICYEQVGPDMLI 416
L + Q+G D LI
Sbjct: 335 LKPYAFSQIGNDYLI 349
>gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
HEL-45]
gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
HEL-45]
Length = 370
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 174/381 (45%), Gaps = 31/381 (8%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
+ DA ++ A + + G P+P GC+I T ++ G G+ + G AE QA+
Sbjct: 5 KVSDARFMALALSLGRRGQGNVWPNPAVGCVIVQGT-RIIGRGWTHPGGRPHAEPQALAQ 63
Query: 102 GGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G RGAT Y+ +EP HG AL+ AG+ RVV+ ++ + G+ + LR+
Sbjct: 64 AGEAARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAA 123
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G+ V V GE EAR +A R P K A + D
Sbjct: 124 GIDVSV-GERE-----AEARAD----HAGFFCRTDLGRPMLTLKLANSFD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPM 279
G+IA +G + WI+ +R +R R DAV+VG T R+D+P LT R G H P
Sbjct: 164 --GRIATGTGESQWITDAPARRLTHAMRARHDAVMVGAGTARKDDPSLTVRDLGVAHQPA 221
Query: 280 RIVLTQTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNS 334
R+V+++ L+LP L +D P I+ A + + G ++ L+
Sbjct: 222 RVVVSRRLDLPLMGQLARTAADIPLILCHGTDADPALVRTWSDLGATLLLCAARGAQLDP 281
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
DV+ G I E G LAAS I + L+ ++ F A +IG + P + LG+
Sbjct: 282 TDVLRQLAGHGLTRIFCEGGSALAASLIEADLVDRLVGFTAGLVIGAEGLPG-IGALGLS 340
Query: 395 EMSQALDLIDICYEQVGPDML 415
+++A +++GPD+L
Sbjct: 341 RLAEAPRFALQSSQRIGPDLL 361
>gi|408372489|ref|ZP_11170189.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax hongdengensis
A-11-3]
gi|407767464|gb|EKF75901.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax hongdengensis
A-11-3]
Length = 371
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 185/391 (47%), Gaps = 47/391 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A + T P+P GC++ G+V GEGY G AE A+ A G
Sbjct: 6 DRQYMARALQLARIALYTTDPNPRVGCVL-VRDGQVVGEGYHVRAGEPHAERNALAAAGE 64
Query: 105 FCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP G AL++AG++RVV + +P + GQ ++ + G+Q
Sbjct: 65 QARGATAYVTLEPCSHTGRTGPCADALIEAGVSRVVAAMTDPNPQVAGQGLQRIAEAGIQ 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V S ++E+ ++ +N I R T + P+ K A ++D G
Sbjct: 125 V-------ASGLLEDEARA---LNPGFISRMTRQRPYIRIKIAASVD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------HGGG 275
+ A +SG + WI+ +R+ V LR RS AV+ G TV D P T R + G
Sbjct: 163 RTAMASGESQWITGPAARENVQHLRARSSAVITGVGTVLADRPSYTVRPEQWTRRPYPGD 222
Query: 276 --HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILN 333
P+R++L +TL P + + +V + R Q L S G EV++
Sbjct: 223 WVRQPLRVILDRTLRTPPDVPVVSAPGHCLVVAGEHHPGR--QNALESAGAEVIQLPASG 280
Query: 334 S----RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
S + ++ + R +L ECG TLA + + GL ++ ++AP ++G P
Sbjct: 281 SGIDLQQLLVELNRRECNEVLVECGATLAGAFVREGLFDELVVYMAPALLGSSARPL--- 337
Query: 390 ELGMVEMSQALDLIDICYE---QVGPDMLIS 417
LG+ +++ + + + ++ QVG D+ ++
Sbjct: 338 -LGLPQLASMSEKVSLKWQDVRQVGEDLRLT 367
>gi|298491837|ref|YP_003722014.1| hypothetical protein Aazo_3165 ['Nostoc azollae' 0708]
gi|298233755|gb|ADI64891.1| conserved hypothetical protein ['Nostoc azollae' 0708]
Length = 155
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 95/162 (58%), Gaps = 11/162 (6%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK W PYG FSNFSPHPI++ W +VEHYYQA KF G + + I
Sbjct: 3 IYFYKVWQPYGCFSNFSPHPIEI----QGTYWPTVEHYYQAQKFVGSEEAI---IIPSIH 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
A +PEEAA LGR R+ +RSDWE VK D+M A+ KF + + +LL T V
Sbjct: 56 AAPTPEEAATLGRCGTRK----LRSDWEMVKTDVMRAAVLKKFITHREIQEVLLVTDDEV 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI 612
LVE SP D FWG G + G N+LG++LM +R E S S+
Sbjct: 112 LVENSPTDYFWGCGADKTGQNHLGKILMSVREEIRQLLSLSV 153
>gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
12809]
gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
12809]
Length = 387
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 36/377 (9%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A G+T +P G ++A + ++ G+ A G AEV A+++ G
Sbjct: 12 MQECAQLALLGKGYTKTNPVVGAIVANQS-EILSRGWHMAYGGPHAEVNAIDSCPVSTEG 70
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
Y+ +EP H T V +V++GI RV +G+ +P + G+ V L++ G++V+V
Sbjct: 71 LDLYVTLEPCS-HSGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYV 129
Query: 167 -LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
EDL + IIE+ + T + P+ FK A TLD GKI
Sbjct: 130 GYMEDLCASIIED-----------FVKFITEKKPYYTFKTAQTLD------------GKI 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLT 284
A+S+G + WISS+ SR +R SDA++VG NTV D+P L R P +IVL
Sbjct: 167 ASSTGDSKWISSEASRTYTHYMRAVSDAILVGVNTVIADDPELNVRMVKSDRDPFKIVLD 226
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD---VMEYF 341
+P + L + S I VT A + + L ++G +V+ S D + +
Sbjct: 227 PKGRMPLDRKLVENSADKLIYVTC--AESRITEALRNKGADVITLGGDGSLDLNVLSDEL 284
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+R L+++ E GGT A +GL+ KV F+A I+GG + + V G+ ++QA
Sbjct: 285 VERSILNVMIEGGGTTAGKFFDAGLVDKVNIFIAMMIMGG--SVSSVGGNGVENVAQAYK 342
Query: 402 LIDICYEQVGPDMLISG 418
L ++ + D++ISG
Sbjct: 343 LKEVQSKHFEGDLMISG 359
>gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
F0359]
gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
F0359]
Length = 371
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 167/342 (48%), Gaps = 34/342 (9%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ A ++A G+TSP+P GC+I G++ G GY + GT AEV A+ +G
Sbjct: 1 MEEALNLARMGLGYTSPNPTVGCVIVKD-GEIVGRGYHHQAGTPHAEVWALREAKEKAKG 59
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G + ALV+AG+ +VV + +P + G+ LR+ G+ V V
Sbjct: 60 ATVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIV- 118
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
L SK E + + + + ++H+ PF K A +LD G A+
Sbjct: 119 --GLMSK--EAVKMNEVFIKNMIVHK-----PFIAVKLAQSLD------------GCTAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-----HGGGHTPMRIV 282
+G + WI++ T+R LR DA++VG NTV DNP LT+R H P RI+
Sbjct: 158 RTGKSKWITNDTARQEGHYLRSLYDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRII 217
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDV 337
L T + +A L +PTI+VT ++ L + GVEV+ + ++ +
Sbjct: 218 LDSTGRIDLQALLVTDKQSPTIIVTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGL 277
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKII 379
M+ + +G SIL E G T+ S L+ K++ F I+
Sbjct: 278 MDTLYKKGICSILIEGGSTVIGSFFDENLVDKLYVFTGHIIM 319
>gi|398304379|ref|ZP_10507965.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus vallismortis DV1-F-3]
Length = 361
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 180/379 (47%), Gaps = 31/379 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ +Y+ A D+A + G T +P G ++ G++ G G G AEV A++ GS
Sbjct: 2 EESYMELALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIQMAGS 60
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GA Y+ +EP +G + L+ +GI R V +R+P + G+ + + G++
Sbjct: 61 HAKGADIYVTLEPCSHYGKTPPCAELIINSGIKRAFVSMRDPNPLVAGRGISMMEEAGIE 120
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + + ++A K +N +H + +P+ K A +LD G
Sbjct: 121 VK------EGILADQAEK----LNEKFLHFMRTGLPYVTLKAAASLD------------G 158
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
K A S+G + WI+S+ +R R +++VG TV+ D+P LT R P+R++
Sbjct: 159 KTATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADDPSLTCRLPNVLKQPVRVI 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEY 340
L L++PE A + A T + T A + +K L+ GV V +E + + D++
Sbjct: 219 LDTELSIPENARVICDQAAQTWIFTTARADEEKKKRLSDFGVNVFTLETERIQIPDILHI 278
Query: 341 FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA- 399
+ G +S+ E G + S + G ++ + APK+IGG +AP +S G M
Sbjct: 279 LAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPGLISGEGFQSMKDVP 338
Query: 400 -LDLIDICYEQVGPDMLIS 417
L DI Q+G D+ ++
Sbjct: 339 LLQFTDIT--QIGRDIKLT 355
>gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
Length = 357
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 25/339 (7%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y++ A + A K G T P+P G LI K+ G GT AE+ A++
Sbjct: 4 KDKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDD-KILSIGAHKKAGTDHAEIVALKNAQ 62
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP HG A++ +GI +VV+G +P + G+ + L+S G+
Sbjct: 63 EDVKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSAGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V ++ C +N T + PF K AM+LD
Sbjct: 123 EVEV----------GVLKEECDKLNEDFFVYITQKRPFITLKCAMSLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GK+A + + WISS+ +R R S A++VG NT+ +DNP+LT R G + P +
Sbjct: 161 GKLAKENKDSKWISSEKARKISHIYRKYSSAILVGINTILKDNPKLTVRLEGNEYQPYSV 220
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341
V+ L++P +AN++ I++ K ++YL S GV ++E + + + +++
Sbjct: 221 VIDPNLDIPYDANIFKKGYENIIIIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKAL 280
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
++ + I E G + + + K+ F K IG
Sbjct: 281 YEIDIMHIFVEGGAYTISRFLEENMWDKMLIFRGYKFIG 319
>gi|431928637|ref|YP_007241671.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
stutzeri RCH2]
gi|431826924|gb|AGA88041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
stutzeri RCH2]
Length = 366
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 180/385 (46%), Gaps = 47/385 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A++ RA +A K T P+P GC+I + G++ GEG+ G AEV A+ G
Sbjct: 4 DHAWMARALQLARKGLYSTHPNPRVGCVI-VAAGELVGEGWHVRAGEPHAEVHALRQAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP +G ALV+AG+ RVV +++P + G+ ++ LRS G++
Sbjct: 63 RARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGRGLQLLRSAGIE 122
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR+ +N I R S +PF K AM+LD
Sbjct: 123 V-------VSGVLEAEARE----INCGFIKRMESGLPFVRAKLAMSLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------- 272
G+ A +SG + WI+ +R V LR RS V+ G +TV D RLT R
Sbjct: 160 GRTAMASGESQWITGPAARAEVQRLRARSSVVLTGADTVLMDAARLTVRGDELGLDAETT 219
Query: 273 --GGGHTPMRIVLTQTLNLPEEANLWDVSDA--PTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A + A T V GA L G E V+
Sbjct: 220 ALALQRPPLRVLVDGQLRVPLDAPFFQAGPALVATTVAGHEGAFAAAGHELLVLGQERVD 279
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L + RG +L E G L + S GLI + F+A K +G ++ P+
Sbjct: 280 LTAL-----LRELGARGANEVLVEAGPRLVGAFASLGLIDEYQIFMAAKFLG--SSARPL 332
Query: 389 SELGMVEMSQALDLIDICYEQVGPD 413
EL + MS+A +L + VG D
Sbjct: 333 LELPLERMSEARELKIVDIRAVGDD 357
>gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
1003]
gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
1003]
Length = 367
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 184/381 (48%), Gaps = 34/381 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++R A +A + G P+P GC+I + G++ G G+ G AE +A++ G
Sbjct: 5 DGRFMRLALGLAGRGLGNVWPNPAVGCVI-VNGGRIVGRGWTQPGGRPHAERRALDQAGP 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP HG + AL+ AG+ RVV + +P + G+ LR+ G+
Sbjct: 64 AARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAAGIA 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V ++ ++ ++ I R P+ K + D G
Sbjct: 124 V-------ETGVLAAEARAAQAGFLSRIERGR---PWLALKLGASFD------------G 161
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIV 282
+IA ++G + WI+ +R +V LR R DAV+VGG T R D+P LT RH P+R+V
Sbjct: 162 RIALANGESQWITGPQARAQVQALRARFDAVLVGGGTARADDPLLTLRHFKPLRAPVRVV 221
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS-RD----- 336
++ L+LP + AP ++ A + + + A G E++E ++ RD
Sbjct: 222 ASRRLDLPRGRLAGSLGQAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDP 281
Query: 337 --VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
++ RG + E GG AAS +++GL+ ++ F A ++GG P + +LG+
Sbjct: 282 VALLAALGARGLTRVFCEGGGQFAASLMAAGLVDELIGFTAGVVLGGDARPG-IGDLGLT 340
Query: 395 EMSQALDLIDICYEQVGPDML 415
+++A + +GPD+L
Sbjct: 341 RLAEAPRYRLDSLQPIGPDVL 361
>gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae
TIGR4]
Length = 360
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 33/375 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
++ A +A K AG+ +P+P G +I + G+GY G AE A++ G
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDN-HIIGQGYHEFFGGPHAERNALKNCRESPVG 59
Query: 109 ATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
AT Y+ +EP CH T + A++ +GITRVV+G + + G+ V+ L LQV V
Sbjct: 60 ATLYVTLEPC-CHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTV 118
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
I+E CL + T VP+ KYAM++D GKIA
Sbjct: 119 -------GILEN---ECLNLIKSFRKYITQHVPYVFMKYAMSMD------------GKIA 156
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQT 286
+ + WI+ + +R V LR A++VG NTV +D+P LT R G P+RI+
Sbjct: 157 TKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTH 216
Query: 287 LNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYF 341
L P + + + D T + T + K + Y + G E++ + ++ +M++
Sbjct: 217 LRTPLTSKIVKTANDIKTYIATSSEDKNKMKLY-QNHGCEILSIKKKGNHIDLSSLMQHL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALD 401
+ S++ E G + SA+ ++ ++ ++APK+ GG +A PV G+ + A+
Sbjct: 276 GNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKVFGG-SAKFPVGGEGISLPNDAIR 334
Query: 402 LIDICYEQVGPDMLI 416
L + Q+G D LI
Sbjct: 335 LKPYAFSQIGNDYLI 349
>gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 4_1_13]
gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 4_1_13]
Length = 369
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 172/369 (46%), Gaps = 35/369 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G +P+P G +I GK+ GEG+ G AEV A+
Sbjct: 6 DEKYMARAIELAKRGIGGVNPNPLVGAVIVKD-GKIIGEGWHKKFGGPHAEVWALNEAEE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ + + G+
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V LG ++E+ K +N +R+P+ K +TLD G
Sbjct: 125 VK-LG------VLEKEAKE---INKIFFKYIENRIPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGHT 277
KIA SG + WI+++ +R++V LR + A++VG NT+ +DNP L +R
Sbjct: 163 KIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEFDILN 333
P R+V+ L P EA + +D I++T + K +KY L +R + +E I
Sbjct: 223 PFRVVIDPNLESPIEAKFLNFNDGKAIIITSNDNKGLEKIEKYKNLGTRFI-FLEGKIFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+++ S+L E G L ++A +I F+APKIIG +A ++
Sbjct: 282 MEDILKELGKLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDSSAVPFINGFNF 341
Query: 394 VEMSQALDL 402
M L
Sbjct: 342 DSMEDVFKL 350
>gi|427414234|ref|ZP_18904424.1| riboflavin biosynthesis protein RibD [Veillonella ratti
ACS-216-V-Col6b]
gi|425714610|gb|EKU77613.1| riboflavin biosynthesis protein RibD [Veillonella ratti
ACS-216-V-Col6b]
Length = 415
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 184/409 (44%), Gaps = 56/409 (13%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA +A ++ GFT P+P G ++ + G++ GEGY G AEV A++A G
Sbjct: 18 DKQYMMRALTLAKRATGFTHPNPMVGAVVVKN-GEIIGEGYHQKAGEAHAEVHALKAAGE 76
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP +G + +++AGI RVVVG+ +P + G+ ++ +R G++
Sbjct: 77 NAKGATLYVTLEPCAHYGKTPPCAKHVIEAGIKRVVVGLIDPNLLVAGKGIQMIREAGIE 136
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V + I+E + LV L T + PF K AM+LD G
Sbjct: 137 V-------TTGILES--ECAKLVEGFLTFIKTGK-PFVTLKSAMSLD------------G 174
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-------H 276
KIA +GH+ WI+++T+R LR DA++ G TV DNP L R H
Sbjct: 175 KIATRTGHSQWITNETARMDGHKLRALHDAILTGIGTVLSDNPSLNCRWQADDTNEHVVH 234
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-DILNSR 335
P IVL P AN++ ++ V K L G +VV D ++
Sbjct: 235 QPDVIVLDSMGRTPTNANIFKQANRKVYVFVSSACETSRIKALEDVGAQVVILSDTTDTT 294
Query: 336 D------------------------VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVF 371
D ++ + G+ S+L E G + AS + + K+
Sbjct: 295 DNIETADALATKQSGSAKVQLPIDAILTKLAELGFTSVLVEGGSQVIASFVEAKAFDKIV 354
Query: 372 AFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
++ IIGG+ A + G+ +++ +DL E + ++ I +L
Sbjct: 355 TYIGNTIIGGQAALGAIRGTGIDQLADGVDLTFESVEILDNNIRIETYL 403
>gi|428777047|ref|YP_007168834.1| hypothetical protein PCC7418_2473 [Halothece sp. PCC 7418]
gi|428691326|gb|AFZ44620.1| hypothetical protein PCC7418_2473 [Halothece sp. PCC 7418]
Length = 158
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 98/161 (60%), Gaps = 11/161 (6%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIK 510
IYFYK PYG FSNFSPHP+ ++G W +VEHYYQAHK G D Q +E I+
Sbjct: 3 IYFYKADQPYGCFSNFSPHPVT---IDGK-QWPTVEHYYQAHKLLGTPD---QPLMEMIR 55
Query: 511 TAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSV 570
+PEEAA +GR R +R+DW++ K +M+R + KF + L LL TG
Sbjct: 56 QVATPEEAAAIGRDRART----IRADWKTAKRSVMWRGVLTKFLTHLDLQQTLLKTGEEW 111
Query: 571 LVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
L+E SP D +WG G++G G N LG++LMQ+R++ E S +
Sbjct: 112 LIEDSPRDYYWGCGKDGSGQNELGKMLMQVRTQIRNEISQT 152
>gi|441181730|ref|ZP_20970269.1| riboflavin biosynthesis protein RibD [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440614244|gb|ELQ77540.1| riboflavin biosynthesis protein RibD [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 375
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 183/386 (47%), Gaps = 43/386 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
+ A +RRA +A G TSP+P GC+I + G GEG+ G AEV A+ G
Sbjct: 8 ETAAMRRAIQLAAHGLGHTSPNPVVGCVILDAAGHTVGEGWHERAGGPHAEVNALREAGD 67
Query: 105 FCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
RG TA++ +EP C +HT AL++AGI RV + +P G + L
Sbjct: 68 RARGGTAFVTLEP--C--NHTGRTGPCAQALIEAGIARVHYAVPDPTPTATGGST-TLAE 122
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V + +EA N + R PF ++KYA TLD
Sbjct: 123 AGIEVE------GGLLADEAAAG----NEAWLTAVLRRRPFVLWKYAATLD--------- 163
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG----- 274
G+IAA+ G + WISS SR V LR ++DAV+VG T R D+P L AR G
Sbjct: 164 ---GRIAAADGTSRWISSAESRADVHRLRAQADAVIVGSGTARADDPHLGARIAGLADAE 220
Query: 275 GHTPMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLAS--RGVEVVEFDI 331
P+R+V+ T + A + D APT++ A + LA R
Sbjct: 221 VSQPLRVVIDTAAAVVKPGARVLD-GTAPTLIAVAEDADAGHLEGLAPIVRLPRTAAGTG 279
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
L+ +++ + R S+L E G TLA S +++ + KV ++AP ++G P + +
Sbjct: 280 LHIPALLDALYARDVRSVLLEGGPTLAGSFLAAHAVDKVVGYLAPVLLGA--GPAALGDA 337
Query: 392 GMVEMSQALDLIDICYEQVGPDMLIS 417
G+ + QAL L +++GPD+ I+
Sbjct: 338 GIGTIDQALRLDVTATDRLGPDLRIT 363
>gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
Length = 371
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 182/402 (45%), Gaps = 57/402 (14%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA ++A + TSP+PN GC+I G++ GEGY G AEV A+ G
Sbjct: 4 QDRIYMARAFELAKEGRFTTSPNPNVGCVI-VRDGEIVGEGYHQKAGEPHAEVHALRMAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GATAY+ +EP HG AL+ AGI+RVV +++P + G+ + L G+
Sbjct: 63 DKAKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
E + ++EEA +N + R + P+ K A +LD
Sbjct: 123 ------ETASNILLEEAEA----LNRGFLKRMRTAFPYIQLKLAASLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----------- 271
GK A ++G + WI+S +R V LR ++ A++ NTV D+P LT R
Sbjct: 161 GKTALANGESKWITSPAARKDVQVLRAQASAILSTSNTVLADDPALTVRWNELPEDIQAK 220
Query: 272 --HGGGHTPMRIVLTQTLNL-PE------EANLWDVSDAPTIVVTQRGARRKFQKYLASR 322
P+RIVL + + P+ E W V P VT +G +
Sbjct: 221 YPEETLRQPIRIVLDRHNRITPDHKVTQLEGECWLVRPTPDTAVTWQGDVEQLAIPADDN 280
Query: 323 GVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG-G 381
G+++V M R SI E G LA S + GL+ ++ ++APK++G
Sbjct: 281 GIDLVIL--------MMQLAKRNVNSIWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGDA 332
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
+ EL + + + D+ E+VG D+ + L+P+
Sbjct: 333 ARGLVSLPELSALSDAPKFEFTDV--EKVGSDLRVR--LRPV 370
>gi|359785931|ref|ZP_09289076.1| riboflavin biosynthesis protein RibD [Halomonas sp. GFAJ-1]
gi|359296758|gb|EHK61001.1| riboflavin biosynthesis protein RibD [Halomonas sp. GFAJ-1]
Length = 389
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 178/372 (47%), Gaps = 45/372 (12%)
Query: 35 PVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA----TSTGKVAGEGYLYAQG 90
P FS +D Y+ RA +A + T P+P GC+I + G+V GEG+ + G
Sbjct: 5 PRHAAFS-LQDHKYMARALQLAKQGLYTTDPNPRVGCVIVRYDESDEGRVVGEGFHISAG 63
Query: 91 TKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHL 149
AE+ A+ A RGATAY+ +EP G + AL +A ++RVVV + +P +
Sbjct: 64 GPHAEIHALNAAAGLARGATAYVTLEPCSHTGRTGPCAVALAEAKVSRVVVAMVDPNPQV 123
Query: 150 RGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTL 209
GQ ++ L++ G+ V V ++E ++ +N I R + PF K AM+L
Sbjct: 124 SGQGIKRLQADGVTVDV-------GLLEADARA---LNPGFISRMQHKRPFVRLKMAMSL 173
Query: 210 DVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 269
D G+ A SG + WI+ +R +V LR RS A++ G ++ D+ RLT
Sbjct: 174 D------------GRTAMGSGESQWITGPEARSQVQRLRARSSAILSGVESLIMDDSRLT 221
Query: 270 ARHGG----------GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYL 319
R P+R++L L LP A ++ T++ + K K L
Sbjct: 222 LRADQLALANADEVVKRQPLRVILDSRLRLPLAAACLREPGRTLLITTEQHSEEKRHK-L 280
Query: 320 ASRGVEVVEFDI-----LNSRDVMEYFHDRGYLS-ILWECGGTLAASAISSGLIHKVFAF 373
+ G E+V F + D++ + D ++ +L E G TLA + + + L++++ F
Sbjct: 281 EAAGAEIVVFPADQGGRIALADMLHWLADNEQVNELLVETGATLAGALLDANLVNELQLF 340
Query: 374 VAPKIIGGKNAP 385
VAP ++GG+ P
Sbjct: 341 VAPTLLGGEARP 352
>gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
Length = 371
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 186/387 (48%), Gaps = 42/387 (10%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+R A ++A K AG +P+P G ++ GKV G GY G AEV A++
Sbjct: 6 DEKYMRMAIELAKKGAGPVNPNPMVGAVVVQG-GKVIGTGYHKYFGEPHAEVYALDEASK 64
Query: 105 FCRG---ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
+ AT Y+ +EP +G +V+ G+ R V+G +P + G+ ++ L++
Sbjct: 65 NSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILKNA 124
Query: 161 GLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V ++L E+ C +N +++P+ K A+TLD
Sbjct: 125 GIEVTENILKEE------------CDKINQVFFKYIMTKLPYLFLKCAITLD-------- 164
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA +G++ WI+++ +R++V R + ++VG NTV DNP LTAR G P
Sbjct: 165 ----GKIATKTGNSKWITNEAAREKVQFYRNKFMGIMVGINTVLADNPSLTARIENGINP 220
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS--- 334
RI++ L ++ + + D TI++T + +++ S + V+F LN
Sbjct: 221 YRIIIDPHLKTEKDYTVIKENIDEKTIIITSEENKNSEKQFDFSENSK-VKFVFLNGTKF 279
Query: 335 --RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++++E G SIL E G +L + A +I F+A KI+G + ++
Sbjct: 280 SFKEILEKIGMLGIDSILLEGGQSLISQAFEEDVIDAGEIFIANKILGDTEGKSFIAGFD 339
Query: 393 MVEMSQALDLIDICY----EQVGPDML 415
M++A+ L +I Y E VG + L
Sbjct: 340 KKNMNEAIVLKNIKYNVYGENVGTEFL 366
>gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
44233]
gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
44233]
Length = 366
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 180/378 (47%), Gaps = 43/378 (11%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A + RAA++A+ A P+P GC++ G GEGY G AEV A+ A G
Sbjct: 12 AALHRAAELAEYGAATALPNPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALTAAGPLA 71
Query: 107 RGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV- 164
RG TA +++EP + G S AL+ AG++RV+V +R+P G V LR G+QV
Sbjct: 72 RGGTAVVSLEPCNHTGRTGPCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQAGVQVV 130
Query: 165 ---HVLGED-LQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+ G+D + +E A+ + A + H PF +K MT+D
Sbjct: 131 DLPSLAGQDPAAAAAVEHAQDVNRVWLAAMRHGR----PFVTWKVGMTID---------- 176
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH---- 276
G++AA+ + WI+S SR V LR R D ++VG TV D+P LT R G
Sbjct: 177 --GRVAAADATSRWITSPQSRADVHALRARVDTIMVGVGTVLDDDPALTVRDDQGEPVGR 234
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRD 336
P+R+V+ + P +A + D APT + T A ++
Sbjct: 235 QPLRVVIDSSGRTPAQARVLD-DAAPTWLATAESAGTGADGR-------------VDLAA 280
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEM 396
V+ RG +L E G LAAS + +GL+ +V A+VAP ++G + +G +
Sbjct: 281 VLAELWRRGRRHVLLEGGPHLAASFLDAGLVDEVVAYVAPTLLGAGPSALSGGAVGTLSD 340
Query: 397 SQALDLIDICYEQVGPDM 414
+ A +L+D+ + GPD+
Sbjct: 341 AHAAELVDLT--RFGPDV 356
>gi|404367669|ref|ZP_10973031.1| riboflavin biosynthesis protein RibD [Fusobacterium ulcerans ATCC
49185]
gi|404288608|gb|EFS25594.2| riboflavin biosynthesis protein RibD [Fusobacterium ulcerans ATCC
49185]
Length = 353
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 168/336 (50%), Gaps = 27/336 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ RA ++A G +P+P G ++ GK+ GEGY G AEV A+E G +G
Sbjct: 1 MERALELAALGEGNVNPNPMVGAVVVKD-GKILGEGYHRKYGGPHAEVFALEEAGEKAKG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G ++ GI R V+ +P + G+ ++ + G++V
Sbjct: 60 ATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIEV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ I+E K L +N + +++ P+ K +TLD GKIA+
Sbjct: 117 ----ITGIME---KEALELNRVFMKYISTKTPYLFLKCGITLD------------GKIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G++ WI+++ +R++V LR + ++VG NTV D+P LTAR G P RIV+ L
Sbjct: 158 RTGNSKWITNELAREKVQRLRNKYMGIMVGINTVLADDPSLTARIENGRNPYRIVIDPFL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQ-KYLASRGVEVVEFDILNSR--DVMEYFHDR 344
++P ++ + D +I+VT K + L ++ V V+ + N + D+++ +
Sbjct: 218 DIPLDSKFVNFEDGKSILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGET 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
G ++L E G L + A + I F+APKI+G
Sbjct: 278 GIDAVLLEGGSFLISRAFAEKAIDGGEIFIAPKILG 313
>gi|377575395|ref|ZP_09804389.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Mobilicoccus pelagius NBRC 104925]
gi|377535972|dbj|GAB49554.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Mobilicoccus pelagius NBRC 104925]
Length = 344
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 185/391 (47%), Gaps = 64/391 (16%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
+R D Y+RRA D+A + P+P G +I + G V GEG+ + GT AE +A+
Sbjct: 6 TRDTDETYLRRALDLAARGP-LGDPNPRVGAVILDADGTVVGEGWHHGAGTPHAEAEALR 64
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
A G RG T Y+ +EP D G A S AL+ AGI RVVV +P + G + LR+
Sbjct: 65 AAGDAARGGTCYVTLEPCDHEGRTPACSQALLAAGIARVVVAGTDP-HPVAGGGLARLRA 123
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G+ D+ ++ EA ++ +N +H + PF +K A TLD
Sbjct: 124 AGV-------DVAHGVLVEAAEA---LNREWLHAVRTGRPFVTWKVASTLD--------- 164
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH--- 276
G+IAA G + WI+ +R V ++R R AV+VG T D+P LT R G
Sbjct: 165 ---GRIAAVDGTSRWITGPAARRDVHEIRARVGAVLVGTGTAIADDPALTVRDADGEDAA 221
Query: 277 -TPMRIVLTQ-TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS 334
P+R+V+ + + LP +A L D GA +L +
Sbjct: 222 RQPLRVVMGERSTALPADARLRD------------GAATTL---------------LLPT 254
Query: 335 RD---VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP-VSE 390
RD + +RG +L E GG LAA+ + G + +V A++AP ++G A TP +++
Sbjct: 255 RDPAVALAALTERGVRHVLLEGGGHLAAAFLREGFVDEVVAYLAPALLG---AGTPCLAD 311
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421
LG+ + A L VG D+ ++ L+
Sbjct: 312 LGITTIGDAARLRVTDVRLVGDDVRLTATLE 342
>gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
Length = 363
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 188/387 (48%), Gaps = 35/387 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+ A +A++ TSP+P GC+I GKV G G+ G AE+ A+
Sbjct: 4 ALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNG-GKVVGTGWHERAGEPHAEIHALRKA 62
Query: 103 GSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G +GAT Y+ +EP HG V AL+QAG+ +VV+ + +P H+ GQ L+ G
Sbjct: 63 GDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKAG 122
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ + + ++A + +N + R P+ K A + D
Sbjct: 123 IAIQA------GLLADQAER----LNIGFVTRMRHDRPWVRTKIAASFD----------- 161
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMR 280
G+ A +G + WI+S+ +R R RS A++ G ++VR+D+P+LT R+ PMR
Sbjct: 162 -GRTALKNGKSQWITSEPARRDGHKWRARSCAILTGISSVRKDDPQLTVRYITVSRQPMR 220
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-DILNSRDV-- 337
IV+ L P +A L +D T + T + ++ K + L G +V D+ D+
Sbjct: 221 IVVDSNLETPLQAKLLQNADT-TWIFTAQTSKEKIHR-LEDTGAHIVVLPDLAGKVDLKA 278
Query: 338 -MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK-NAPTPVSELGMVE 395
M + G +L E G L + +++GL+ ++ + AP ++G A + E+G +
Sbjct: 279 MMVKLAELGINELLVEAGPVLNGALVTAGLVDEIIFYFAPSLLGNSAQAMLALPEIG--D 336
Query: 396 MSQALDLIDICYEQVGPDM-LISGFLQ 421
+S+ DL ++G D+ LI+ F++
Sbjct: 337 LSEKYDLQISDIRKIGMDVRLIARFMK 363
>gi|383315775|ref|YP_005376617.1| riboflavin biosynthesis protein RibD [Frateuria aurantia DSM 6220]
gi|379042879|gb|AFC84935.1| riboflavin biosynthesis protein RibD [Frateuria aurantia DSM 6220]
Length = 368
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 185/379 (48%), Gaps = 33/379 (8%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D A + +A +A K T P+P GC+IAT G V G+G+ G AEV A+
Sbjct: 8 ALDQACMTQALALAAKGLYTTDPNPRVGCVIATGEG-VVGQGWHRRAGEPHAEVHALREA 66
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G+ GATAY+ +EP HG + AL++AG+ RVVV ++P + GQ + LR G
Sbjct: 67 GAQAHGATAYVTLEPCAHHGRTPPCADALIEAGVARVVVACQDPFPAVAGQGIERLRQAG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+QV + + EAR +NA R P+ K AM+LD
Sbjct: 127 IQVDI------GLLQAEARA----LNAGFFSRIERGRPWLRLKMAMSLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----T 277
G+ A +G + WI+ + +R R RS A++ TV D+P LTAR T
Sbjct: 166 -GRTALVNGESRWITGEAARADAHRWRARSSAILSSAATVLADDPLLTARLQDEAVEVVT 224
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-LNSRD 336
P+R++L + L P++A + D S APT ++ A+ + +R V + E L+
Sbjct: 225 PVRVILDRWLRTPDDARVLDGS-APTWLLHGELAKPSAIQAARARCVVMPERGKHLDLVA 283
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL-GMVE 395
VM++ G + E G TLA + ++GL ++ ++AP ++G + P+ +L ++
Sbjct: 284 VMQWLASEGINEVHLEAGPTLAGALFTAGLADELLIYMAPVLLG--DHAMPLLQLPNLLS 341
Query: 396 MSQALDLIDICYEQVGPDM 414
M + DL + +G D+
Sbjct: 342 MDERWDLQPLEQTMLGADL 360
>gi|342218720|ref|ZP_08711326.1| riboflavin biosynthesis protein RibD [Megasphaera sp. UPII 135-E]
gi|341589096|gb|EGS32462.1| riboflavin biosynthesis protein RibD [Megasphaera sp. UPII 135-E]
Length = 378
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 180/371 (48%), Gaps = 34/371 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+++A +A + G+T+P+P GC+I GK+ G GY GT AEV A+E G
Sbjct: 2 EDVEYMKKALQLAALARGYTTPNPVVGCVIVKD-GKIVGTGYHQKAGTPHAEVWALEEAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GAT Y+ +EP +G + LV+ +++VV+ + +P + G+ LR G+
Sbjct: 61 DAAAGATVYVTLEPCAHYGRTPPCARTLVKHKVSKVVIAMLDPNPLVAGKGAAILRQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V V + +EA +N I +++PF K A +LD
Sbjct: 121 AVEV------GLLSQEAA----YLNEVFIKNMLTQMPFIAIKLAQSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA---RHGGG--HT 277
G IA +GH+ WI++ SR + LR D +VVG NTV DNP LT R GG H
Sbjct: 159 GCIATKTGHSQWITNTWSRQQGHYLRSIYDGIVVGINTVLADNPLLTCRIKREGGKAPHQ 218
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDV 337
P+RI+L P + + A TI+VT + ++ ++ L GV V+ + + + V
Sbjct: 219 PVRIILDSQGRTPCTSLVVTDKTAQTIIVTTQRCAQERREALEKAGVRVLVAPMQDGKRV 278
Query: 338 -----MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
+ + G S+L E G T+ S + L KV F+ +IGG A V+ G
Sbjct: 279 DLAKALTLLYQEGIRSLLVEGGSTIHGSFFDAQLFDKVHVFLGNSVIGGTQALHAVAGEG 338
Query: 393 MVEMSQALDLI 403
++ +S+ + L+
Sbjct: 339 VMNLSECVPLV 349
>gi|422339994|ref|ZP_16420950.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355370433|gb|EHG17816.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 369
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 172/369 (46%), Gaps = 35/369 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 6 DEKYMARAIELAKRGTGGVNPNPLVGAVVVKD-GKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ + G+
Sbjct: 65 NAKGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGI- 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D++ ++E+ K VN + ++VP+ K +TLD G
Sbjct: 124 ------DIKLGVLEKEAKD---VNKIFLKYIENKVPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGHT 277
KIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 163 KIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARR----KFQKYLASRGVEVVEFDILN 333
P R+V+ L P EA + +D I+VT + K + L +R + +E
Sbjct: 223 PFRVVIDPNLESPIEAKFLNFNDNKAIIVTSSDNKNLEKIKVYEKLGTRFI-FLEGKTFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
+D+++ S+L E G L ++A +I F+APKIIG +A ++
Sbjct: 282 MKDILKELGRLEIDSVLLEGGSGLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNF 341
Query: 394 VEMSQALDL 402
M L
Sbjct: 342 DSMEDVFKL 350
>gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
Length = 363
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 188/381 (49%), Gaps = 35/381 (9%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D+ ++ A +A++ TSP+P GC++ +V G G+ G AEV A+ A
Sbjct: 3 AADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQH-EVVGTGWHERAGEPHAEVHALRAA 61
Query: 103 GSFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G +GATAY+ +EP HG ALV AGI RVV +++P + GQ + LR+ G
Sbjct: 62 GKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAAG 121
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V + ++E A + +N + R T +P+ K A +LD
Sbjct: 122 IGV-------ECGLMEVAARE---LNIGFVSRMTRGIPWVRSKVAASLD----------- 160
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMR 280
G+ A ++G + WI+ + +R V R RS AV+ G TV D+P+L R P+R
Sbjct: 161 -GRTALANGSSKWITGEAARCDVQHWRARSCAVLTGIGTVLADDPQLNVREMPAARQPLR 219
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----D 336
+VL L + +A + + + +V T K K L++RG EVV L+ +
Sbjct: 220 VVLDSELRISSQAEI--LRNGHALVYTACTVDAKL-KALSARGAEVVTLAGLDGKVDLFA 276
Query: 337 VMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG-MVE 395
VM RG +L E G L + + +GL+ ++ ++AP+++G +A ++ELG + +
Sbjct: 277 VMRDLARRGINEVLVEAGRELNGALLKAGLVDEMVLYLAPQLLG--DAARGLAELGELTQ 334
Query: 396 MSQALDLIDICYEQVGPDMLI 416
+ Q + L QVG D+ I
Sbjct: 335 LQQRVPLQWQDVRQVGSDLRI 355
>gi|398994114|ref|ZP_10697036.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM21]
gi|398133173|gb|EJM22401.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM21]
Length = 377
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 180/393 (45%), Gaps = 45/393 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ RA ++A K T P+P GC+I G+V GEG+ G AEV A+ A G
Sbjct: 11 DAHYMARALELARKGHYTTHPNPRVGCVI-VRDGQVVGEGWHVRTGEPHAEVHALRAAGE 69
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGATAY+ +EP HG HT ALV AG+ RVV +++P + G+ ++ L G+
Sbjct: 70 QARGATAYVTLEPCSHHG-HTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGI 128
Query: 163 QVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+S ++E EARK +N + R +PF K AM+LD
Sbjct: 129 AT-------ESGVLEGEARK----LNQGFLKRMEHGLPFVRVKLAMSLD----------- 166
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH--------- 272
G+ A SG + WI+ +R V LR ++ V+ G +TV DN RLT R
Sbjct: 167 -GRTAMESGESQWITGPAARSAVQRLRAQASVVLTGADTVLADNARLTVRADELGLDPEQ 225
Query: 273 ---GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF 329
P+R+++ L +P A + P +V T ++ V V+
Sbjct: 226 TALAMSRPPLRVLIDGRLRVPLNAPFFKAG--PALVATCVAVEEQYANGPECLIVPGVDG 283
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
+ R ++E H RG +L E G LA + GL+ + F+A K +G ++ P+
Sbjct: 284 QVDLHRLLIELAH-RGVNEVLVEAGPRLAGAFAQQGLVDEFQIFIAGKFLG--SSARPLL 340
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
+ + +M A +L VG D ++ P
Sbjct: 341 DWPLAQMKDAPELKITDIRAVGDDWRVTAIPSP 373
>gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
DS-1]
gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
DS-1]
Length = 372
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 178/374 (47%), Gaps = 39/374 (10%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTG---KVAGEGYLYAQGTKPAEV 96
+R DA +++ A +A++ G +P+P GC++ G +V G G+ G AE
Sbjct: 1 MARPYDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAET 60
Query: 97 QAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVR 155
+A+ G+ RGAT Y+++EP HG AL++AG+ RVV I +P + G+
Sbjct: 61 EALARAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFA 120
Query: 156 ALRSQGLQV--HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVIL 213
AL + G++V +V D +N + + P K A +LD
Sbjct: 121 ALEANGIEVTENVCAADAHH------------LNEGFFLTMSEKRPLVTLKIASSLD--- 165
Query: 214 PGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273
G IA GH+ WI+ +R+R LR DA++VG T D+P LT R
Sbjct: 166 ---------GYIATHEGHSQWITGDRARERGHLLRATHDAIMVGSATAIVDDPELTCRLP 216
Query: 274 G--GHTPMRIVLTQTLNLPEEANL-WDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
G +P+RI+ L LP + L D S P ++T G + +K GV ++E +
Sbjct: 217 GLGDRSPIRIIADGRLRLPLTSKLVRDASKTPVWILTLPGGDGQRRKAFEDCGVTLIEVE 276
Query: 331 -----ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
I+N R +E RG +L E G LAAS + S L+ ++ F APK+IGG P
Sbjct: 277 AGEGGIMNMRAALEQIAARGVTRLLVEGGSRLAASLVLSRLVDRIEWFRAPKLIGGDGYP 336
Query: 386 TPVSELGMVEMSQA 399
VS LG+ ++ A
Sbjct: 337 A-VSALGVKKLDGA 349
>gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus DSM
785]
gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus DSM
785]
Length = 371
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 178/374 (47%), Gaps = 38/374 (10%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G ++ G++ G G+ G AEV A+ G RGA+ Y+ +EP
Sbjct: 22 GRTSPNPAVGAVV-VQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTI 80
Query: 121 HGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE-E 178
G + A++ AGI V++ R+P A L++ G++V E + I + E
Sbjct: 81 WGRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTE 140
Query: 179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
A + H ++ PF KYAM+LD GKIA +G A WIS
Sbjct: 141 AFR----------HWIVTKQPFVTVKYAMSLD------------GKIATRTGDARWISGP 178
Query: 239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTPMRIVLTQTLNLPEEAN 294
SR +V +LR ++DA++VG NTV D+P LT R P+R+VL +P A
Sbjct: 179 ASRQKVHELRDQTDAILVGINTVLADDPLLTTRLEQHWRPVQHPVRVVLDARGRMPASAA 238
Query: 295 LWDVSDAPTIVVTQRGARRKFQKYLAS-RGVEVVEF-DILNSR----DVMEYFHDRGYLS 348
+ ++DA + AS E++E L R ++ RG S
Sbjct: 239 M--LADAVPGSTIIATTAAASAAWRASLNNAEILELPSNLEGRVSIPALLNELGQRGISS 296
Query: 349 ILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE 408
++ E GG A+ +++ + KV +APKIIGG AP+PV+ +G+ MS+A E
Sbjct: 297 LMVEGGGETIAAFLAAQAVQKVQVVIAPKIIGGV-APSPVAGVGIARMSEAQLWQVRSSE 355
Query: 409 QVGPDMLISGFLQP 422
Q+G D+ ++ + P
Sbjct: 356 QIGADIWLTAYPNP 369
>gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
Length = 384
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 183/390 (46%), Gaps = 56/390 (14%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++ +A +A K T P+P GC++ ++ G+G+ G AEV A+
Sbjct: 9 WMAKAIQLAKKGRYTTHPNPRVGCVLVKDQ-QIIGQGFHVKAGEGHAEVNALADAKHDAV 67
Query: 108 GATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GATAY+ +EP G AL++AG+ RVV G+++P + G + ++ G+++
Sbjct: 68 GATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEI-- 125
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+G L+S C +N I R +P+ K AM++D G+ A
Sbjct: 126 IGPILES--------DCEALNPGFIKRMREGLPYVRVKLAMSMD------------GRTA 165
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---------HT 277
SG + WI+ +R V LR +SDA+V G +V DNP +T R
Sbjct: 166 MESGESQWITDSAARLDVQRLRAQSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQ 225
Query: 278 PMRIVLTQTLN-LPEEANLWDVSDA------------PTIVVTQRGARRKFQKYLASRGV 324
P+R+V+ L+ LPE L+ + A ++T++G +F A RG
Sbjct: 226 PIRVVMDTALSILPEAKILYPANQAWVFSVEEEVEAEHLELLTKKGVTVRF----APRG- 280
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
E D+L D ME D G +L E G LA + +GLI ++ ++APK++G ++
Sbjct: 281 EDGRLDLL---DAMEQLADAGINEVLLEAGAELAGGFLEAGLIDEIIVYMAPKLLG--SS 335
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPDM 414
P+ +L + M +A+DL QVG D+
Sbjct: 336 ARPLFKLPLDVMDEAVDLTLKSVRQVGQDV 365
>gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
Length = 385
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 186/380 (48%), Gaps = 32/380 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA + TSP+P GC++ + G+ AGEG+ G AEV+A+ A G G
Sbjct: 22 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 81
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP G AL AG++RVV + +P + G A R L + G++V
Sbjct: 82 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASGGAER-LAAGGVEV--- 137
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ EEA + N + PF +K+A T+D G+ AA
Sbjct: 138 ---VGGLHREEAERH----NEFWLTSVRRERPFVTWKFAGTID------------GRSAA 178
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIVLTQT 286
+ G + WI++ +R LR DAV+VGG T+R DNP L RHG G P+R+VL
Sbjct: 179 ADGSSRWITAAQARRDAHALRAVHDAVLVGGGTLRADNPHLGLRHGVVGEPPLRVVLDSA 238
Query: 287 LNLPEEANLWDVSDAPTIVVT--QRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+ A + D S APT+VV + G R + V E D L+ + E R
Sbjct: 239 GRIKPGARVLDGS-APTLVVVSDRAGEPRGLGAAAGTLAVPSTE-DGLDLAALSERLFAR 296
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E G LAA ++ GL+ +V A++AP +GG P V+++G+ M++A +
Sbjct: 297 GVRSVLLEGGARLAAGFLAGGLVDRVVAYLAPMFLGGAGLPV-VTDIGVASMAEAARMRV 355
Query: 405 ICYEQVGPDMLISGFLQPIP 424
Q+GPD+ + +QP P
Sbjct: 356 EEVRQLGPDLRV--VMQPEP 373
>gi|422315025|ref|ZP_16396468.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
D10]
gi|404592988|gb|EKA94678.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
D10]
Length = 370
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 181/388 (46%), Gaps = 35/388 (9%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
++ D ++ RA ++A K G +P+P G ++ GK+ GEG+ G AEV A+
Sbjct: 2 NKTVDEKFMARAIELAFKGIGGVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWALN 60
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G +GAT Y+ +EP G + +V+AGI R V+ +P + G+ ++ +
Sbjct: 61 EAGEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIED 120
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V I+E+ K VN + +++P+ K +TLD
Sbjct: 121 AGIKVDF-------GILEKEAKE---VNKVFLKYIENKIPYLFLKCGITLD--------- 161
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------ 273
GKIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 162 ---GKIATRSGKSKWITNELAREKVQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGI 218
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEF 329
P R+V+ L P ++ +D I+VT R K ++Y L +R + +E
Sbjct: 219 EKRNPFRVVVDPNLESPIDSKFLHFNDNKAIIVTSNDNRNLEKVKEYENLGTRLI-YLEG 277
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
I D+++ S+L E G L ++A +I F+APKIIG ++ ++
Sbjct: 278 KIFKMEDILKELGKLNIDSVLLEGGSGLISTAFKENVIDAGEIFIAPKIIGDNSSIPFIN 337
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLIS 417
M + L + + G ++ I
Sbjct: 338 GFNFDSMEEVFKLSNPKFNIYGDNISIE 365
>gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 369
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 35/351 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ RA ++A K G +P+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 6 DEKYMARAIELAQKGIGGVNPNPLVGAVVVKD-GKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GAT Y+ +EP G + +V+AGI R VV +P + G+ ++ + G+
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGI- 123
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
D++ ++E+ K VN + ++VP+ K +TLD G
Sbjct: 124 ------DIKLGVLEKEAKD---VNKIFLKYIENKVPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGHT 277
KIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 163 KIATRSGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARR----KFQKYLASRGVEVVEFDILN 333
P R+V+ L P EA + +D I+VT + K + L ++ + +E
Sbjct: 223 PFRVVIDPNLESPIEAKFLNFNDNKAIIVTSSDNKNLEKIKVYEKLGTKFI-FLEGKTFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
D+++ S+L E G L ++A +I F+APKIIG +A
Sbjct: 282 MEDILKELGKLEIDSVLLEGGSELISTAFKENIIDAGEIFIAPKIIGDNSA 332
>gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
Length = 371
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 165/351 (47%), Gaps = 41/351 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D AY+ RA +A + T P+P GC++ G++ GEG+ G AE+ A+ G
Sbjct: 3 DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRG-GEIVGEGWHQQAGDSHAEINALRQAGI 61
Query: 105 FCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+G+T Y+ +EP CH T AL++AG+ RVV + +P + Q + LR GL
Sbjct: 62 RAQGSTCYVTLEPC-CHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGL 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
QV + EEA +N + R P+ K AM+LD
Sbjct: 121 QVE------HGLLQEEAEA----LNVGFVQRLVQGRPWVRCKLAMSLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------G 273
G A +SG + WI++ +R V R RS A++ G TV D+P L R+ G
Sbjct: 159 GATALASGESRWITASPARRDVQRWRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLG 218
Query: 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-- 331
P+R++L + L + +A L + P ++V A K + L RGVEV+ +
Sbjct: 219 FNRQPLRVILDRQLAISVQARLLSLP-GPVMIVCADAASSKAES-LRCRGVEVISLPVTP 276
Query: 332 --LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
L+ +M R + ECG LA S + +GL+ ++ ++APK++G
Sbjct: 277 QGLDLMALMAALAAREINELHVECGARLAGSLLQAGLMDELVLYIAPKLMG 327
>gi|422019672|ref|ZP_16366215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia alcalifaciens Dmel2]
gi|414102778|gb|EKT64368.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia alcalifaciens Dmel2]
Length = 371
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 182/402 (45%), Gaps = 57/402 (14%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA ++A + TSP+PN GC+I G++ GEGY G AEV A+ G
Sbjct: 4 QDRIYMARAFELAKEGRFTTSPNPNVGCVIVRD-GEIVGEGYHQKAGEPHAEVYALRMAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GATAY+ +EP HG AL+ AGI+RVV +++P + G+ + L G+
Sbjct: 63 DKAKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
E + ++EEA +N + R + P+ K A +LD
Sbjct: 123 ------ETASNILLEEAEA----LNRGFLKRMRTAFPYIQLKLAASLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----------- 271
GK A ++G + WI+S +R V LR ++ A++ NTV D+P LT R
Sbjct: 161 GKTALANGESKWITSPAARKDVQVLRAQASAILSTSNTVIADDPALTVRWNELPADIQAK 220
Query: 272 --HGGGHTPMRIVLTQTLNL-PE------EANLWDVSDAPTIVVTQRGARRKFQKYLASR 322
P+RIVL + + P+ E W V P VT +G +
Sbjct: 221 YPEETLRQPIRIVLDRHNRVTPDHKVTQLEGECWLVRPTPDTTVTWQGDVEQLAIPADDN 280
Query: 323 GVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG-G 381
G+++V M R SI E G LA S + GL+ ++ ++APK++G
Sbjct: 281 GIDLVIL--------MMQLAKRNVNSIWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGDA 332
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
+ EL + + + D+ E+VG D+ + L+P+
Sbjct: 333 ARGLVSLPELSALSDAPKFEFTDV--EKVGSDLRVR--LRPV 370
>gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
Length = 369
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 179/384 (46%), Gaps = 35/384 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++ RA ++A + G +P+P G ++ GK+ GEG+ G AEV A+ G
Sbjct: 6 DEKFMARAIELAFRGLGGVNPNPLVGAVVVKD-GKIIGEGWHKKYGGPHAEVWALNEAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+ +EP G + +V+AGI R V+ +P + G+ ++ + G++
Sbjct: 65 EAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAGIK 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V I+E+ K VN + +++P+ K +TLD G
Sbjct: 125 VDF-------GILEKEAKE---VNKVFLKYIENKIPYLFLKCGITLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG------GGHT 277
KIA SG + WI+++ +R++V LR + A++VG NTV +DNP L +R
Sbjct: 163 KIATRSGKSKWITNELAREKVQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRN 222
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR--RKFQKY--LASRGVEVVEFDILN 333
P R+V+ L P ++ +D I+VT R K ++Y L +R + +E I
Sbjct: 223 PFRVVVDPNLESPIDSKFLHFNDNKAIIVTSNDNRNLEKVKEYENLGTRLI-YLEGKIFK 281
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+++ S+L E G L ++A +I F+APKIIG ++ +S
Sbjct: 282 MEDILKELGKLNIDSVLLEGGSGLISTAFKENVIDAGEIFIAPKIIGDNSSIPFISGFNF 341
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
M + L + + G ++ I
Sbjct: 342 NSMEEVFKLSNPKFNIYGDNISIE 365
>gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
Length = 364
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 176/355 (49%), Gaps = 38/355 (10%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+FS A D A +++A +A + TSP+P GC+IA G++ G+G+ G AEV A
Sbjct: 3 QFSHA-DHALMQQAIALAWQGRFSTSPNPRVGCVIAQG-GQIVGQGFHLKAGEPHAEVHA 60
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
+ GS +GATAY+ +EP HG + AL++AG+ RVV +++P + G+ + L
Sbjct: 61 LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
+ G+QV + EAR+ +N + R PF K A +LD
Sbjct: 121 EAAGIQVAC------GLMEREARQ----LNRGFLSRIERGRPFVKLKTAASLD------- 163
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-H 276
GK A ++G + WI+ + +R V R S AV+ G TV DNPRLT R
Sbjct: 164 -----GKTALANGQSQWITGEAARHDVQIQRAESCAVLTGIGTVLADNPRLTVRDFPTLR 218
Query: 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----- 331
P+R++L L LP ++L D S APT++ T + + E+ +
Sbjct: 219 PPLRVLLDSRLRLPAGSHLLDGS-APTLIYTLS------DRPAPAGAAEICRLEADAQGR 271
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
L+ V+ RG ++ E G TL ++ ++ L+ ++ + APK++GG +PT
Sbjct: 272 LSLNAVLADLAARGIGELMLEAGATLGSAFLAQDLVDEIVCYQAPKLLGGAQSPT 326
>gi|384100231|ref|ZP_10001294.1| riboflavin biosynthesis protein RibD [Rhodococcus imtechensis
RKJ300]
gi|383842178|gb|EID81449.1| riboflavin biosynthesis protein RibD [Rhodococcus imtechensis
RKJ300]
Length = 350
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 185/384 (48%), Gaps = 60/384 (15%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S A+ A ++ A A+ + GFTSP+P G ++ S G++AG G G AEV A+
Sbjct: 6 SAADLDAAMQIAIGAAESARGFTSPNPAVGAVVLDSAGRIAGVGMTQPPGGPHAEVVALR 65
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G RG TA + +EP + HG S AL+ AG+ V + +P G A L S
Sbjct: 66 EAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVIAVHYAVGDPNPEAAGGA-ETLVS 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V L+++ +E L HR + P +KYA TLD
Sbjct: 125 AGVEVT---SGLRAQDVERGPLRAWL------HRQRTGRPHVTWKYAATLD--------- 166
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---- 275
G+ AA+ G + WI+ +R+RV R + DA+VVG TV DNPRLTAR G
Sbjct: 167 ---GRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGTVLADNPRLTARMPDGSLAA 223
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
H P+R+V+ ++P +A + D S APT+ +L +R
Sbjct: 224 HQPVRVVVGLG-DIPADARVLDDS-APTL--------------------------LLRTR 255
Query: 336 DVMEYFHDRG-YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP-VSELGM 393
DV E Y +L E G LA + +++G + ++ A++AP ++G A TP V+E G+
Sbjct: 256 DVDEVLAALAEYTDVLLEGGPRLAGAFLAAGRVDRIQAYLAPLVLG---AGTPAVAEAGV 312
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ AL E +GPD+L+S
Sbjct: 313 HTIDGALRFRHESVETIGPDLLLS 336
>gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
Length = 384
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 167/359 (46%), Gaps = 45/359 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
A D Y+RRA +A++ G T P+P G ++ G++ GEGY G AEV A+
Sbjct: 9 ALDERYLRRALQLAERGRGHTHPNPLVGAVL-VKNGRIVGEGYHPRAGEPHAEVFALHQA 67
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G +GAT Y+++EP D HG S AL++AG+ RVVV R+P +G R LRS G
Sbjct: 68 GEEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPKAQGGLER-LRSAG 126
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+ V + + EAR N H R PF ++K A++LD
Sbjct: 127 VAVEL------GLLEAEARAQ----NEVFFHALRRRRPFVLWKAALSLD----------- 165
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT---- 277
G++A SGHAAW+S+ SR R AV+VG TV D+P+LT R
Sbjct: 166 -GQVATRSGHAAWVSNALSRRVAQGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHL 224
Query: 278 --------PMRIVLTQTLNLPEEANLWDV----SDAPTIVVTQRGARRKFQKYLASRGVE 325
P+++VL P A L+ A V+ GA + L G
Sbjct: 225 LEPPPLRDPLKVVLDTEARTPPGARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGAT 284
Query: 326 VVEFDILNSRDVME----YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
VVE R +E + ++G +L E G TLA + + G + KV F+APK++G
Sbjct: 285 VVELPREGGRVSLEAALAWLWEQGVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVG 343
>gi|406879714|gb|EKD28238.1| Riboflavin biosynthesis protein RibD [uncultured bacterium]
Length = 384
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 32/344 (9%)
Query: 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFC 106
A+++ A A+K P+P G +I + GK+ GEGY G AEV A+ +
Sbjct: 17 AHMQNAFKNANKGTNKVYPNPFVGAVIVKA-GKIMGEGYHEECGKAHAEVNAIRMAQTHA 75
Query: 107 RGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
+GA Y+ +EP +G +A+ +AGI RV G + + R +A AL+++ ++
Sbjct: 76 KGADLYVTLEPCSTYGRTPPCTTAIAEAGIKRVFFGAYDSNKKNRKKAEMALKTKNIETV 135
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+ D Q E +N +H TS++P+ + K A++LD GKI
Sbjct: 136 FI--DFQKTNDE--------LNRVFLHNLTSKIPYVILKAAISLD------------GKI 173
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT---PMRIV 282
S G + WI+ SR +R SD +++G NT +DNP+LT R G P +I+
Sbjct: 174 MDSKGKSKWITGAQSRTAAHQIRQLSDGIIIGANTFNKDNPKLTVRLAGNQKFKDPAKII 233
Query: 283 LTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVE----FDILNSRDV 337
++ + NL L + I+ T K +K + + VV ++ +
Sbjct: 234 ISASGNLKTNNELLSKNTKGEVIIFTSEPVSAKLRKNIKNNNCIVVSMGKALKQISLKGC 293
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
+ Y RGY ++L E G L I L +++ +VAPK GG
Sbjct: 294 LTYLKKRGYHNLLVEGGAKLLGQFIKLKLFNELHLYVAPKFFGG 337
>gi|343505430|ref|ZP_08743002.1| riboflavin-specific deaminase [Vibrio ichthyoenteri ATCC 700023]
gi|342807728|gb|EGU42908.1| riboflavin-specific deaminase [Vibrio ichthyoenteri ATCC 700023]
Length = 368
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 180/393 (45%), Gaps = 60/393 (15%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D + RA +A T+P+PN GC+I T G++ GEG+ + G AEV A+ G
Sbjct: 7 QDFLMMSRAIKLAQGGIYTTAPNPNVGCVI-TRDGQIVGEGFHFRAGEPHAEVHALRMAG 65
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
GATAY+ +EP +G L+ A + +V+ +++P + G+ +R LR G+
Sbjct: 66 ELAEGATAYVTLEPCSHYGRTPPCAEGLINAKVAKVICAMQDPNPQVSGRGIRMLREAGI 125
Query: 163 QVHV--LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
+V V L D Q+ +N I R + +PF K A +LD
Sbjct: 126 EVQVGLLEADAQA------------LNPAFIKRMQTGMPFVQLKMAASLD---------- 163
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------- 271
G+ A ++GH+ WI+S +R V LR +S A++ TV DN L R
Sbjct: 164 --GQTALANGHSQWITSAQARQDVQVLRAQSGAILSTSQTVIEDNASLNVRWDDLPKSLQ 221
Query: 272 --HGGGH--TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
+ H P+R++L + L + L+ Q G R +A G
Sbjct: 222 AHYPAEHLRQPVRVILDRQSKLSADLKLF-----------QTGGERLV---VAPNGDIEC 267
Query: 328 EFDILNSRDV---MEYFHDRGYLSILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
++ N D+ E + ++ +W E G TLA+S I L+ +V ++APK++ G +
Sbjct: 268 PLNVDNQVDLRATFEMLAKQHNINHIWVEAGATLASSLIQQQLVDEVVLYLAPKLM-GSD 326
Query: 384 APTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
LG+ EMSQ +DL +QVG D+ I
Sbjct: 327 GRGLFGALGLQEMSQVIDLDITELKQVGRDIRI 359
>gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
Length = 383
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 180/391 (46%), Gaps = 42/391 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV-EAGGSFC 106
++++A A G TSP P G ++ +V G G AE+ A+ EA +
Sbjct: 6 FMQKAIACARSIEGRTSPRPPVGAVLVREN-QVIGRGATSPPYGPHAEIHALREAETTAA 64
Query: 107 RGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
GA Y +EP C HT +A++ AGI RV++G +P + G+ V LR G++V
Sbjct: 65 VGADLYTTLEPC-CITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIEV 123
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
I E + L+ P T P+ K+AMTLD GK
Sbjct: 124 --------ITTIAEPETAALI--RPFATYITQGRPYVTAKWAMTLD------------GK 161
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------HGGGHT 277
+A+ +G A+WIS +R V LR R DA+++G T D+PRLT R H
Sbjct: 162 LASHTGDASWISGSAARTWVHQLRDRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQR 221
Query: 278 P--MRIVLTQTLNLPEEANLWDVSDAP-TIVVTQRGARRKFQKYLASRGVEVVEF--DIL 332
P +RIV++ L + L+ AP T V+ + ++ L RG++V+E D
Sbjct: 222 PNHLRIVVSSRGELNAQLQLFQKQLAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQT 281
Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAAS---AISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
D+M H G I+ ++ A LI V AFVAPK+IGG+ AP+P+
Sbjct: 282 GRVDLMAALHILGQREIMHLLLEGGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPIG 341
Query: 390 ELGMVEMSQALDLIDICYEQVGPDMLISGFL 420
G+ M A L + ++ V D+LI G +
Sbjct: 342 GAGLAIMQHAHRLQQVSFQTVAEDLLIEGEM 372
>gi|392422575|ref|YP_006459179.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri CCUG
29243]
gi|390984763|gb|AFM34756.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri CCUG
29243]
Length = 366
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 178/385 (46%), Gaps = 47/385 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A++ RA +A + T P+P GC+I + G++ GEG+ G AEV A+ G
Sbjct: 4 DHAWMARALQLACRGLYSTHPNPRVGCVI-VADGELVGEGWHVRAGEPHAEVHALRQAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP +G ALV+AG+ RVV +++P + G + LRS G++
Sbjct: 63 RARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLELLRSAGIE 122
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR+ +NA I R S +PF K AM+LD
Sbjct: 123 V-------ASGVLEGEARE----LNAGFIKRMESGLPFVRAKLAMSLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-------- 274
G+ A +SG + WI+ +R V LR RS V+ G +TV D RLT R
Sbjct: 160 GRTAMASGESQWITGPAARAEVQRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETT 219
Query: 275 ----GHTPMRIVLTQTLNLPEEANLWDVSDA--PTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A + A T V GA L G E V+
Sbjct: 220 ALAMQRQPLRVLVDGQLRVPLDAPFFQAGPALVATTVAGHEGAFAAAGHELLVLGQERVD 279
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L + RG +L E G L + GLI + F+A K +G ++ P+
Sbjct: 280 LTAL-----LRELGARGANEVLVEAGPRLVGAFAGLGLIDEYQIFMAAKFLG--SSARPL 332
Query: 389 SELGMVEMSQALDLIDICYEQVGPD 413
EL + MS+A +L + VG D
Sbjct: 333 LELPLERMSEARELKIVDIRAVGDD 357
>gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 371
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+R A ++A G TSP+P G ++ G+V G+G GT AEV A+ G
Sbjct: 3 EDERYMRMALEVARLGEGQTSPNPMVGAIVVNG-GRVVGQGAHLMAGTPHAEVHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP + HG + A++ G+ RVVV + G V+ L+ G+
Sbjct: 62 DAAQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGI 121
Query: 163 QVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V V ++E EAR+ +N HR T+ P+ V+K AMTL
Sbjct: 122 EVTV-------GVLEAEARE----LNRHFFHRVTTGRPYVVYKVAMTL------------ 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT---- 277
+G +AASSGH+ +++ +R+ V LR A+ VG TV D+P LTAR T
Sbjct: 159 SGHVAASSGHSQYVTGLAAREDVHWLRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDR 218
Query: 278 -PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRG----VEVVEFD-I 331
P+R+V L P A L ++ ++R A + LA +G V E D
Sbjct: 219 QPLRVVFDTRLRTPPTARLLAAPGRTLLLTSERMASAPAARRLAEQGDVRIAPVAERDGH 278
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKII-GGKNAPTPVSE 390
L+ + G ++L E G TLA++ + S LI ++ ++APK++ GG A
Sbjct: 279 LDLHAALSAIAAEGANALLVEGGPTLASALLKSRLIDEIRVYLAPKLLAGGLPAFAGAFT 338
Query: 391 LGMVEMSQALDLIDICYEQVGPDMLISG 418
GM E A++L + + VG D++++G
Sbjct: 339 QGMAE---AVELHGVRSDWVGDDLVVTG 363
>gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
4252]
gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
4252]
Length = 368
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 176/386 (45%), Gaps = 41/386 (10%)
Query: 51 RAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA-----GGSF 105
R ++A + AG SP+P G ++ + G+V EG+ G AE A+E G
Sbjct: 3 RCLELAFRGAGRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGPEA 62
Query: 106 CRGATAYLNMEPGDCHGDHTAVSA-LVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV 164
R AT Y+N+EP +G + ++ GI RVVVG+ +P + G+ + LR+ G+QV
Sbjct: 63 LRRATLYVNLEPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGVQV 122
Query: 165 HVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V ++E A C N +H + P K A TLD G
Sbjct: 123 EV-------GVLEAA---CRRFNEAFVHHVETGRPLVTLKMAQTLD------------GF 160
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLT 284
+A +G + WIS + +R V R D V+VG T D+P LT RH G P+RIVL
Sbjct: 161 VATRTGQSRWISGERARKLVHCWRAVLDGVLVGSGTAAADDPALTVRHVEGRQPVRIVLD 220
Query: 285 QTLNLPEEANLW-DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+T LP L+ D A T+ + GAR + L G V + + +E +
Sbjct: 221 RTGGLPPTLRLFTDEQAARTLAIVGPGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLE 280
Query: 344 ----------RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
R S+L E G LA + GL+ + F F+AP++ G+ P +++LG+
Sbjct: 281 RLGREGGPDGRPLQSLLVEAGPRLATALFRQGLVDRFFLFIAPRLF-GEGVPL-LNDLGV 338
Query: 394 VEMSQALDLIDICYEQVGPDMLISGF 419
+ + + +VG D+L G+
Sbjct: 339 RAVDEGPRFEAHRWVEVGEDLLFLGY 364
>gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
Length = 381
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 181/395 (45%), Gaps = 53/395 (13%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A G T +P GC++ + G G GT AEV A+ RG
Sbjct: 1 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP D G S AL++AG+ RV+ + +P + G A R + V +
Sbjct: 61 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
++E + + A R PF +K+A TLD G+ AA
Sbjct: 121 LGAEAEAVLE------MWLTAVRAGR-----PFVTWKFAATLD------------GRSAA 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIVLTQT 286
+ G A WISS SR +LR R DAV+VG T R D+PRL RHG GH P+RI L
Sbjct: 158 ADGSARWISSAESRADAHELRARHDAVLVGSGTWRSDDPRLDLRHGVVGHPPLRIALDAR 217
Query: 287 LNLPEEANLWDVSDAPTIVVTQ-------------------RGARRKFQKYLASRGVEVV 327
LP ++ L D + APT+VVT + A+ G +V+
Sbjct: 218 GELPPDSRLLDGA-APTLVVTDPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVL 276
Query: 328 EFDILNSR------DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
++R D++ RG S+L E G LAAS + +GL+ +V A+VAP ++G
Sbjct: 277 RLKT-DARGHFPPLDLLAALDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGS 335
Query: 382 KNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416
+ + LG+ + +A +++GPD+ I
Sbjct: 336 EGV-SATGPLGIGSIREAHRFRITSVDRIGPDLRI 369
>gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
Length = 368
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 37/380 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVI-VKNGRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+ Y+ +EP CH +T V+ L++ + V + + +P + G+ +LR G+ V+
Sbjct: 70 GSEVYVTLEPC-CHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKAGICVY 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
E L + E + KS I++ T P+ V K A T+D G++
Sbjct: 129 ---EGLGKEEAERSLKS-------YIYQRTHGKPWVVIKSAATVD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRI 281
A G + WI+ +R V LR RS A++VG TV +DNP LTAR G P+R+
Sbjct: 167 ADRDGQSQWITCPEARADVGKLRARSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDV 337
V+ +P EA ++ S ++ VT + +K + GV+++ + +N ++
Sbjct: 227 VVDSKGVVPPEAKVFH-SAGKSLYVTTPQSSEDHRKKIEDLGVDLLVTEPQGAKVNLHEL 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
M Y L +L E G L + + L+H + ++ PKI+G + PT +LG+ +
Sbjct: 286 MAYLSTTPTLQVLVEGGAALHTAFLKERLVHALVLYLGPKILGDQRNPT-FGDLGL-RLH 343
Query: 398 QALDLIDICYEQVGPDMLIS 417
+ ++ I E +G + S
Sbjct: 344 SSQKIVPIFSEIIGNSLKTS 363
>gi|343497592|ref|ZP_08735655.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
nigripulchritudo ATCC 27043]
gi|342817784|gb|EGU52660.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
nigripulchritudo ATCC 27043]
Length = 365
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 183/387 (47%), Gaps = 47/387 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + RA +A + TSP+PN GC+IA GK+ GEG + G AEV A+ A G
Sbjct: 7 DHQMMARAIALAKRGRFTTSPNPNVGCVIAKD-GKIVGEGLHFKAGEPHAEVHALRAAGE 65
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATAY+ +EP +G S AL++AG+ RVV +++P + G+ V+ LR G++
Sbjct: 66 NAKGATAYVTLEPCSHYGRTPPCSEALIKAGVARVVCAMQDPNPVVAGRGVKMLRDAGVE 125
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E ++ +N + R + PF K A +LD G
Sbjct: 126 VEV-------GVLESDARA---LNKGFLKRMETGKPFVQLKLAASLD------------G 163
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
+ A S+G + WI+S +R V R +S A+V TV DN L R +++
Sbjct: 164 QTALSNGESKWITSPQARQDVQAYRAQSCAIVSTSKTVIDDNASLNVRWSELPESTQVIY 223
Query: 284 TQT-LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE----FDILNSRDVM 338
++ L P A I+ Q+ + + +EVV+ + LNS +
Sbjct: 224 PESELRQP----------ARVILDRQQKLHQNLSLFQTPGNIEVVDPKSPYFQLNSAGQV 273
Query: 339 E--YFHDR-----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
+ Y D+ G I E G TLAAS I L+ ++ ++APK++G + V L
Sbjct: 274 DIPYVFDKLAEKLGIQHIWVEAGATLAASLIEQDLMDELIVYLAPKLMGS-DGRGLVHIL 332
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISG 418
G+ M QA+DL VGPD+ I+
Sbjct: 333 GLTSMQQAIDLEINDVRMVGPDIRITA 359
>gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
acidaminovorans]
gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 368
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 184/388 (47%), Gaps = 33/388 (8%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A+ Y++RA +A+K+ G SP+P G +I + +V EG+ G+ +E+QA+
Sbjct: 1 MTDAQIKQYMQRAIKVAEKARGKCSPNPFVGSVIVKNN-QVISEGWTLEYGSDHSEIQAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
+ G + AT ++ +EP +G A++ AGI V +GI +P ++G+ + L+
Sbjct: 60 KKAGKKAKDATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLK 119
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G+ VH +EE ++ L I + PF K A+TLD
Sbjct: 120 EAGIDVHY-------GFLEEKIRTQLECYLCYIQKER---PFVTLKTALTLD-------- 161
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT- 277
GK AA G A WI+ K +R+ LR +D V+ G T+ D+PRL R G +
Sbjct: 162 ----GKYAAEDGTAHWITGKKAREYAHQLRSENDVVLTGIMTILFDDPRLNVRLPGNYKQ 217
Query: 278 PMRIVLTQTLNLPEEANLWDVS-DAPTIVVTQ-RGARRKFQKYLASRGVEVVEFDI---- 331
P+R+VL L +P + +S P +V+T + L +GV++ +
Sbjct: 218 PLRVVLDPYLKIPVLSYFVSISAKFPGMVITSPDNLQTDKADILRQKGVKIEALETKDGH 277
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
N +V+ + Y S+L E G +A + + LI K+ KI+GG +P P L
Sbjct: 278 FNLHEVLNLLYKMNYYSVLLETGSGIAEAFLKEELIDKIIFIYGAKILGGTKSPLP--NL 335
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISGF 419
G+ + +AL + ++ D++++ +
Sbjct: 336 GIESIYKALYIWKTSCRKIENDVVVTAY 363
>gi|384452940|ref|YP_005665537.1| riboflavin biosynthesis protein [Chlamydophila psittaci 08DC60]
gi|334695629|gb|AEG88845.1| riboflavin biosynthesis protein [Chlamydophila psittaci 08DC60]
Length = 368
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I + G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKN-GRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+ Y+ +EP CH +T V+ L++ + V V + +P + G+ + +LR G+ V+
Sbjct: 70 GSEVYVTLEPC-CHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVY 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
E L + E + KS L ++ T P+ V K A TLD G++
Sbjct: 129 ---EGLGKEEAERSLKSYL-------YQRTHGKPWVVIKSAATLD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRI 281
A G + WI+ +R V LR S A++VG TV +DNP LTAR G P+R+
Sbjct: 167 ADKDGQSQWITCPEARADVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
V+ +P EAN++ S ++ VT + + +K + GV+++ + +S+ ++
Sbjct: 227 VVDSKGVIPSEANIFH-STGKSLYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHEL 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
M Y L +L E G L S + L + + ++ PKI+G + P
Sbjct: 286 MTYLSTTHTLQVLVEGGAVLHTSFLKERLANTLVLYLGPKILGDQRKP 333
>gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
Length = 363
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 190/386 (49%), Gaps = 38/386 (9%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ A +A +RRA +A + G TSP+P GC+I ++G V GEG+ G AE+ A+
Sbjct: 1 MATAAEADAMRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHAL 60
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTA-----VSALVQAGITRVVVGIRNPLQHLRGQAV 154
A G RG TAY+ +EP C +HT ALV+AG+ RVV + +P G A
Sbjct: 61 RAAGVLARGGTAYVTLEP--C--NHTGRTGPCAQALVEAGVARVVYAVADPNGEAAGGA- 115
Query: 155 RALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILP 214
LR+ G++V + L ++ L + + R P +KYA TLD
Sbjct: 116 DTLRAAGIEVE---QGLLAEEAAAGNAGWL--TSVRLGR-----PHVTWKYAATLD---- 161
Query: 215 GVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG 274
G++AA+ G + WISS SR V LR +DAVVVG T R D+P L R
Sbjct: 162 --------GRVAAADGTSRWISSPESRADVHRLRAEADAVVVGSGTARADDPHLAVRGVA 213
Query: 275 GHT-PMRIVL-TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR-GVEVVEFDI 331
G T P+R+V+ T+ + + A + D APT V ++A +
Sbjct: 214 GATQPLRVVIDTEAVAVKPGARVLD-DAAPTAVAVAEDVLPDATAHIADVWRLPRASGGG 272
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
L+ ++ H RG S+L E G TLA + +++G + +V ++AP ++G P +++
Sbjct: 273 LDVAALLATLHTRGVRSVLLEGGPTLAGAFVAAGAVDRVIGYLAPVLLGA--GPAALADA 330
Query: 392 GMVEMSQALDLIDICYEQVGPDMLIS 417
G+ ++ AL L ++G D+ ++
Sbjct: 331 GITTITDALRLDVTETVRIGTDLRVT 356
>gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
Length = 369
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 164/344 (47%), Gaps = 30/344 (8%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + ++ A D+A TSP+P GC+IA G+V G+G+ G AEV A+ G
Sbjct: 6 DISMMQNALDLAALGRFSTSPNPRVGCVIAQG-GQVVGQGFHIKAGEPHAEVHALRQAGK 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATA++ +EP +G ALV+AG++RVV +R+P + G+ + L + G++
Sbjct: 65 MAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIK 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
++ ++E K +N + R R PF K A++LD G
Sbjct: 125 -------MECGLLESEAKE---LNRGFLSRIERRRPFVRLKCAVSLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
K A S G + WI+ + +R V LR S AV+ G TV DNPRL R P RIV
Sbjct: 163 KTALSDGSSFWITGEEARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIV 222
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV-----EFDILNSRDV 337
L L LP ++L +PT + T K + Y + ++ ++ +
Sbjct: 223 LDSRLRLPPYSHLVTDGQSPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHL 282
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381
M D G+ I+ E G L ++ ++ L ++ + +PKI+GG
Sbjct: 283 MRLLADEGFGEIMVEAGSELTSAFLAEDLADEIVLYRSPKILGG 326
>gi|419966835|ref|ZP_14482751.1| riboflavin biosynthesis protein RibD [Rhodococcus opacus M213]
gi|414567744|gb|EKT78521.1| riboflavin biosynthesis protein RibD [Rhodococcus opacus M213]
Length = 350
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 185/384 (48%), Gaps = 60/384 (15%)
Query: 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVE 100
S AE A ++ A A+ + GFTSP+P G ++ S G++AG G G AEV A+
Sbjct: 6 SAAELDAAMQIAIGAAESARGFTSPNPAVGAVVLDSAGRIAGVGMTQPPGGPHAEVVALR 65
Query: 101 AGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRS 159
G RG TA + +EP + HG S AL+ AG+ V + +P G A L S
Sbjct: 66 EAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVIAVHYAVGDPNPEAAGGA-ETLVS 124
Query: 160 QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSW 219
G++V L+++ +E L HR + P +KYA TLD
Sbjct: 125 AGVEVT---SGLRAQDVERGPLRAWL------HRQRTGRPHVTWKYAATLD--------- 166
Query: 220 MLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG---- 275
G+ AA+ G + WI+ +R+RV R + DA+VVG TV D+PRLTAR G
Sbjct: 167 ---GRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGTVLADDPRLTARMPDGSLAA 223
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
H P+R+V+ ++P +A + D S APT+ +L +R
Sbjct: 224 HQPVRVVVGLG-DIPADARVLDDS-APTL--------------------------LLRTR 255
Query: 336 DVMEYFHDRG-YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP-VSELGM 393
DV E Y +L E G LA + +++G + ++ A++AP ++G A TP V+E G+
Sbjct: 256 DVDEVLAALAEYTDVLLEGGPRLAGAFLAAGRVDRIQAYLAPLVLG---AGTPAVAEAGV 312
Query: 394 VEMSQALDLIDICYEQVGPDMLIS 417
+ AL E +GPD+L+S
Sbjct: 313 HTIDGALRFRHESVETIGPDLLLS 336
>gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
Length = 371
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 182/401 (45%), Gaps = 55/401 (13%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA ++A K TSP+PN GC+I G+V GEGY G AEV A+ G
Sbjct: 4 QDRIYMARAFELARKGRFTTSPNPNVGCVIVRD-GEVVGEGYHQKAGEPHAEVHALRMAG 62
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
RGATAY+ +EP HG AL++AG++RVV +++P + G+ + L G+
Sbjct: 63 DKARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQAGI 122
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+ S I+ E ++ +N + R + P+ K A +LD
Sbjct: 123 ET-------SSNILLEQAEA---LNRGFLKRMRTAFPYIQLKLAASLD------------ 160
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----------- 271
GK A SG + WI+S +R V LR ++ A++ NTV D+P LT R
Sbjct: 161 GKTALESGESKWITSPAARKDVQVLRAQASAILSTSNTVIADDPALTVRWSELPSDIQQE 220
Query: 272 --HGGGHTPMRIVLTQTLNLPEEANL-------WDVSDAPTIVVTQRGARRKFQKYLASR 322
P+RIVL + + E + W + P VT +G +
Sbjct: 221 YPEDQLRQPIRIVLDRHNKVTPEHQVTQLAGECWLIRPTPDNEVTWQGQVEQVPILADEN 280
Query: 323 GVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
G+++V M R SI E G TLA S + GL+ ++ ++APK++ G
Sbjct: 281 GIDLVIL--------MMQLAKRNINSIWVEAGPTLAGSLLKLGLVDELIVYIAPKLL-GD 331
Query: 383 NAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423
A V+ + +S A + E+VG D+ + L+P+
Sbjct: 332 TARGLVNFPALKSLSDAPNFEFTDVEKVGNDLRVR--LRPV 370
>gi|384431251|ref|YP_005640611.1| riboflavin biosynthesis protein RibD [Thermus thermophilus
SG0.5JP17-16]
gi|333966719|gb|AEG33484.1| riboflavin biosynthesis protein RibD [Thermus thermophilus
SG0.5JP17-16]
Length = 377
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 185/398 (46%), Gaps = 51/398 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RRA +A+++ G TSP+P G ++ G++ GEG+ G AEV A+ G
Sbjct: 5 DERFLRRALQLAERARGHTSPNPLVGAVL-VREGRIVGEGFHPRAGEPHAEVLALREAGE 63
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP D G S AL+QAG++RVVV R RG R LR+ G+Q
Sbjct: 64 LARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVARGGLAR-LRAGGVQ 122
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ++ ++E EAR N +PF + K A+TLD
Sbjct: 123 V-------EAGLLEAEARAQ----NEVFFTVQKKGLPFVLLKAALTLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT----- 277
GK+AA SG A WISS+ SR R AV+VG TV +D+P LT RH
Sbjct: 160 GKVAAPSGDARWISSEASRRVAHAYRQWLPAVMVGVGTVLKDDPALTVRHPDFRPFPWML 219
Query: 278 -------PMRIVLTQTLNLPEEANLWDV----SDAPTIVVTQRGARRKFQKYLASRGVEV 326
P+++VL P A L+ A +V GA L G V
Sbjct: 220 EPPPLRDPLKVVLDTEARTPPTARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARV 279
Query: 327 V----EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382
V E ++ + + + G +L E G LA + + GL+ K+ F+AP+I+G
Sbjct: 280 VALPREGGRVDPERALAFLLEEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEG 339
Query: 383 NAPTPVSELGMVE-MSQALDLIDICYEQVGPDMLISGF 419
++E VE +++AL L E +G D+ + +
Sbjct: 340 RG---LAEGFRVERVAEALRLRLARREWLGEDLWLEAY 374
>gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
Length = 373
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 186/389 (47%), Gaps = 48/389 (12%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED+ + A ++A K T P+P+ G +I G++ GEGY G AEV A+ G
Sbjct: 5 EDSQMMSLAIELAQKGMYTTRPNPSVGSVI-VKDGEIVGEGYHIRAGGPHAEVYALNMAG 63
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
S +GATAY+ +EP +G AL++ G++RVV+ + +P + G+ + LR G+
Sbjct: 64 SDAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGI 123
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+V V + EEA++ VN + R +P+ K A +LD
Sbjct: 124 RVDV------GLMTEEAKQ----VNLGFLKRMEKGLPWVTVKLAASLD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------- 272
GK A S+G + WI+ +R V LR R A+V G T+ D+P L RH
Sbjct: 162 GKTALSNGVSKWITGPEARRDVQRLRARHCALVTGVETILADDPSLNVRHSELGSLASQL 221
Query: 273 --GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQK----YLASRGVEV 326
H P+R+VL L E NL+ + D+P ++V+ + Q ++ S+ +
Sbjct: 222 APAEIHQPLRVVLDSQARLGHELNLFKI-DSPILLVSTQAYPESVQAAWPPHVQSQVLAA 280
Query: 327 VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG--GKNA 384
V+ I + + S+L E G TLA + ++ GL ++ + A KI+G G+N
Sbjct: 281 VDSRI--DLNALLSLLGESCNSVLVEAGATLAGAFVNQGLADEIVLYQAMKILGSQGRNL 338
Query: 385 PTPVSELGMVEMSQALDLIDICYEQVGPD 413
T M E+ + ++LID +VGPD
Sbjct: 339 LTLDDFQAMSEVPK-INLID--ERKVGPD 364
>gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica 020-06]
gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica 020-06]
Length = 369
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 170/351 (48%), Gaps = 39/351 (11%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D + ++ A +A TSP+P GC+IA G++ G+G+ G AEV A+ G
Sbjct: 6 DISMMQNALKLAALGRFSTSPNPRVGCVIAQG-GQIVGQGFHVKAGEPHAEVHALRQAGE 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GATA++ +EP +G ALV+AG++RVVV +R+P + G+ + L + G++
Sbjct: 65 MAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAAGIK 124
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
+ ++E EAR+ +N + R R PF K A++LD
Sbjct: 125 T-------ECGLLESEARE----LNRGFLSRIERRRPFVRLKCAVSLD------------ 161
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRI 281
GK A S G + WI+ + +R V LR S AV+ G TV DNPRL R P RI
Sbjct: 162 GKTALSDGSSFWITGEEARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARI 221
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV--------EFDILN 333
VL L LP ++L +PT + T K + Y V ++ + D+
Sbjct: 222 VLDSRLRLPPNSHLVTDGQSPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDL-- 279
Query: 334 SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG-GKN 383
+M D GY ++ E G LA++ ++ L ++ + +PKI+G GK+
Sbjct: 280 -HRLMRLLADEGYGEVMVEAGAKLASAFLAEDLADEIVLYRSPKILGSGKD 329
>gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
Length = 372
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 173/354 (48%), Gaps = 34/354 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +I ++ T P+P GC++ GK+ EGY G AE A+
Sbjct: 11 FMRRAIEIGERGRITTPPNPWVGCVL-VKNGKILSEGYHEYPGGPHAEEIAIRKAHVSLE 69
Query: 108 GATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA YL++EP +G + L++ + V + +++P + G+ + +L++ G++VHV
Sbjct: 70 GAQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNVGIRVHV 129
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
E+ + ARKS P +++ +S P+ V K A ++D G++A
Sbjct: 130 GLEEAR------ARKSL----QPYLYQRSSCSPWVVLKSAASID------------GQVA 167
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRIV 282
+ + WI+ +R V +R S AV+VG TV DNP+LTAR G P+RIV
Sbjct: 168 DRNSQSQWITCPEARHDVGFIRACSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIV 227
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDVM 338
L + +P+E+ ++ + V T+R + Q YL + GVE+ +S +VM
Sbjct: 228 LDSSGRVPKESQVFHLGGEVLYVTTKRCPSQHLQ-YLEALGVEIACVKASSSGVDLHEVM 286
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
++ +L +L E G T+ + L + + + PKI+G + P ELG
Sbjct: 287 RLLANKHFLQVLVEGGATVHTEFLKHHLANAIILYYGPKILGDQKKPL-FKELG 339
>gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
Length = 364
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 186/380 (48%), Gaps = 32/380 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA + TSP+P GC++ + G+ AGEG+ G AEV+A+ A G G
Sbjct: 1 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60
Query: 109 ATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
TA + +EP G AL AG++RVV + +P + G A R L + G++V
Sbjct: 61 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASGGAER-LAAGGVEV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ EEA + N + PF +K+A T+D G+ AA
Sbjct: 117 ---VGGLHREEAERH----NEFWLTSVRRERPFVTWKFAGTID------------GRSAA 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG-GGHTPMRIVLTQT 286
+ G + WI++ +R LR DAV+VGG T+R DNP L RHG G P+R+VL
Sbjct: 158 ADGSSRWITAAQARRDAHALRAVHDAVLVGGGTLRADNPHLGLRHGVVGEPPLRVVLDSA 217
Query: 287 LNLPEEANLWDVSDAPTIVVT--QRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344
+ A + D S APT+VV + G R + V E D L+ + E R
Sbjct: 218 GRIKPGARVLDGS-APTLVVVSDRAGEPRGLGAAAGTLAVPSTE-DGLDLAALSERLFAR 275
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLID 404
G S+L E G LAA ++ GL+ +V A++AP +GG P V+++G+ M++A +
Sbjct: 276 GVRSVLLEGGARLAAGFLAGGLVDRVVAYLAPMFLGGAGLPV-VTDIGVASMAEAARMRV 334
Query: 405 ICYEQVGPDMLISGFLQPIP 424
Q+GPD+ + +QP P
Sbjct: 335 EEVRQLGPDLRV--VMQPEP 352
>gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
ATCC 27064]
gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
ATCC 27064]
Length = 379
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 187/380 (49%), Gaps = 44/380 (11%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+RRA ++A + G TSP+P GC+I ++G++AG GY G AEV A+ A G+ RG
Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60
Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH-- 165
TAY+ +EP D G S AL+ AGITRVV + +P G A LR+ G++V
Sbjct: 61 GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASGGA-GTLRAAGVRVECG 119
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+LG + ++ VNA + P V+KYA TLD G+I
Sbjct: 120 LLGPEAEA------------VNAAWLTSVRLGRPQVVWKYAATLD------------GRI 155
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPMRIVLT 284
AA + WI+S +R V LR +DAVV+G T+R D+P+L R G P+R+VL
Sbjct: 156 AAEDRSSRWITSPEARADVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGAVQPLRVVLD 215
Query: 285 QTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI-------LNSRDV 337
+ A + D APT++ GA GV+ V L+ +
Sbjct: 216 SRATVTPAARVLD-DAAPTLIAVGEGADTGHLP-----GVDTVVLPAAPGPGRGLDLHAL 269
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMS 397
+ RG S+L E G TLA + +++ + KV ++AP ++G A + + + +
Sbjct: 270 LAELSARGVRSVLLEGGPTLAGAFVAARAVDKVIGYLAPALLGAGPAALGGAGISTIGEA 329
Query: 398 QALDLIDICYEQVGPDMLIS 417
LDL + ++GPD+ I+
Sbjct: 330 LRLDLTESV--RIGPDLRIT 347
>gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
gi|384450978|ref|YP_005663578.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC]
gi|384451966|ref|YP_005664564.1| riboflavin biosynthesis protein [Chlamydophila psittaci 01DC11]
gi|384453919|ref|YP_005666515.1| riboflavin biosynthesis protein [Chlamydophila psittaci C19/98]
gi|384454898|ref|YP_005667493.1| riboflavin biosynthesis protein [Chlamydophila psittaci 02DC15]
gi|392377041|ref|YP_004064819.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1]
gi|407454465|ref|YP_006733573.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci 84/55]
gi|407457150|ref|YP_006735723.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci VS225]
gi|407461087|ref|YP_006738862.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci WC]
gi|449071540|ref|YP_007438620.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci
Mat116]
gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1]
gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC]
gi|334692700|gb|AEG85919.1| riboflavin biosynthesis protein [Chlamydophila psittaci C19/98]
gi|334693676|gb|AEG86894.1| riboflavin biosynthesis protein [Chlamydophila psittaci 01DC11]
gi|334694655|gb|AEG87872.1| riboflavin biosynthesis protein [Chlamydophila psittaci 02DC15]
gi|405781224|gb|AFS19974.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci 84/55]
gi|405784411|gb|AFS23158.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci VS225]
gi|405787106|gb|AFS25850.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci WC]
gi|449040048|gb|AGE75472.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci
Mat116]
Length = 368
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I + G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKN-GRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+ Y+ +EP CH +T V+ L++ + V V + +P + G+ + +LR G+ V+
Sbjct: 70 GSEVYVTLEPC-CHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVY 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
E L + E + KS L ++ T P+ V K A TLD G++
Sbjct: 129 ---EGLGKEEAERSLKSYL-------YQRTHGKPWVVIKSAATLD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRI 281
A G + WI+ +R V LR S A++VG TV +DNP LTAR G P+R+
Sbjct: 167 ADKDGQSQWITCPEARADVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
V+ +P EAN++ S ++ VT + + +K + GV+++ + +S+ ++
Sbjct: 227 VVDSKGVIPPEANIFH-STGKSLYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHEL 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
M Y L +L E G L S + L + + ++ PKI+G + P
Sbjct: 286 MTYLSTTHTLQVLVEGGAVLHTSFLKERLANTLVLYLGPKILGDQRKP 333
>gi|373498071|ref|ZP_09588586.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 12_1B]
gi|371962111|gb|EHO79720.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 12_1B]
Length = 353
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 168/336 (50%), Gaps = 27/336 (8%)
Query: 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
+ RA ++A G +P+P G ++ GK+ GEGY G AEV A+E G +G
Sbjct: 1 MERALELAALGEGNVNPNPMVGAVVVKD-GKILGEGYHKKYGGPHAEVFALEEAGEKAKG 59
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT Y+ +EP +G ++ GI R V+ +P + G+ ++ + G++V
Sbjct: 60 ATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIEV--- 116
Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
+ I+E K L +N + +++ P+ K +TLD GKIA+
Sbjct: 117 ----ITGIME---KEALELNRVFMKYISTKTPYLFLKCGITLD------------GKIAS 157
Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTL 287
+G++ WI+++ +R++V LR + ++VG NTV D+P LTAR G P RIV+ L
Sbjct: 158 RTGNSKWITNELAREKVQRLRNKYMGIMVGINTVLADDPSLTARIENGRNPYRIVIDPFL 217
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQ-KYLASRGVEVVEFDILNSR--DVMEYFHDR 344
++P ++ + D +I+VT K + L ++ V V+ + + + D+++ +
Sbjct: 218 DIPLDSKFVNFEDGKSILVTSYNNVEKEKISLLKNKNVNVIFLEGTDFKICDILKKVGET 277
Query: 345 GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
G ++L E G L + A + I F+APKI+G
Sbjct: 278 GIDAVLLEGGSFLISRAFAEKAIDGGEIFIAPKILG 313
>gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius LAA1]
gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius LAA1]
Length = 371
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 188/387 (48%), Gaps = 38/387 (9%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
ED Y+R A ++A G TSP+P G ++ G V G+G GT AEV A+ G
Sbjct: 3 EDERYMRMALEVARLGEGQTSPNPMVGAIVVNG-GLVVGQGAHLMAGTPHAEVHALRMAG 61
Query: 104 SFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GAT Y+ +EP + HG + A++ +G+ RVVV + G V+ L+ GL
Sbjct: 62 DAAKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGL 121
Query: 163 QVHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
+V V ++E EAR+ +N HR + P+ V+K AMTL
Sbjct: 122 EVSV-------GVLEVEARE----LNRHFFHRVETGRPYVVYKVAMTL------------ 158
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHT---- 277
+G +AASSGH+ +++ +R+ V LR A+ VG TV D+P LTAR T
Sbjct: 159 SGHVAASSGHSQYVTGLAAREDVHRLRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDR 218
Query: 278 -PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRG----VEVVEFD-I 331
P+R+V L P A L ++ ++R A LA++G V V E D
Sbjct: 219 QPLRVVFDTRLRTPPTARLLTAPGRTLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGH 278
Query: 332 LNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSEL 391
L+ + G ++L E G TLA++ + S LI +V ++APK++ G P
Sbjct: 279 LDLHAALSAIAAEGANALLVEGGPTLASALLQSRLIDEVRVYLAPKLLAG-GLPAFAGAF 337
Query: 392 GMVEMSQALDLIDICYEQVGPDMLISG 418
MS +++L + E VG D++++G
Sbjct: 338 TQ-SMSASVELHGVRSEWVGDDLVLTG 363
>gi|406592789|ref|YP_006739969.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci CP3]
gi|406594779|ref|YP_006742060.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci MN]
gi|410858824|ref|YP_006974764.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci 01DC12]
gi|405783211|gb|AFS21959.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci MN]
gi|405788661|gb|AFS27404.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci CP3]
gi|410811719|emb|CCO02374.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci 01DC12]
Length = 368
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 171/347 (49%), Gaps = 33/347 (9%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I + G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKN-GRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+ Y+ +EP +GD V+ L++ + V V + +P + G+ + +LR G+ V+
Sbjct: 70 GSEVYVTLEPCCHYGDTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVY- 128
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
E L + E + KS L ++ T P+ V K A TLD G++A
Sbjct: 129 --EGLGKEEAERSLKSYL-------YQRTHGKPWVVIKSAATLD------------GQVA 167
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRIV 282
G + WI+ +R V LR S A++VG TV +DNP LTAR G P+R+V
Sbjct: 168 DKDGQSQWITCPEARADVGKLRACSQAIIVGSKTVLKDNPLLTARQPSGELYPCQPLRVV 227
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DVM 338
+ +P EAN++ S ++ VT + + +K + GV+++ + +S+ ++M
Sbjct: 228 VDSKGVIPPEANIFH-STGKSLYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHELM 286
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
Y L +L E G L S + L + + ++ PKI+G + P
Sbjct: 287 TYLSTTHTLQVLVEGGAVLHTSFLKERLANALVLYLGPKILGDQRKP 333
>gi|406593845|ref|YP_006741024.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci NJ1]
gi|407455734|ref|YP_006734625.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci GR9]
gi|407458473|ref|YP_006736778.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci WS/RT/E30]
gi|405782277|gb|AFS21026.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci GR9]
gi|405784952|gb|AFS23698.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci WS/RT/E30]
gi|405789717|gb|AFS28459.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci NJ1]
Length = 368
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I + G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKN-GRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+ Y+ +EP CH +T V+ L++ + V V + +P + G+ + +LR G+ V+
Sbjct: 70 GSEVYVTLEPC-CHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVY 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
E L + E + KS L ++ T P+ V K A TLD G++
Sbjct: 129 ---EGLGKEEAERSLKSYL-------YQRTHGKPWVVIKSAATLD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRI 281
A G + WI+ +R V LR S A++VG TV +DNP LTAR G P+R+
Sbjct: 167 ADKDGQSQWITCPEARADVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
V+ +P EAN++ S ++ VT + + +K + GV+++ + +S+ ++
Sbjct: 227 VVDSKGVIPPEANIFH-STGKSLYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHEL 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
M Y L +L E G L S + L + + ++ PKI+G + P
Sbjct: 286 MTYLSTTHTLQVLVEGGAVLHTSFLKERLANALVLYLGPKILGDQRKP 333
>gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
307]
gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
307]
Length = 370
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 184/376 (48%), Gaps = 43/376 (11%)
Query: 52 AADIADKSAGFTSPHPNFGCLIA---TSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
A + + G P+PN GC+I + G+V G G+ G AE +A++ G G
Sbjct: 4 ALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GIDADG 61
Query: 109 ATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
AT+Y+ +EP HG V AL+ A + RVV+ +P + G+ V LR+ G+
Sbjct: 62 ATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGI----- 116
Query: 168 GEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
D+ + + E EAR+ A + R T PF K A + D G+IA
Sbjct: 117 --DVITGVREHEAREDM----AGFLLRVTENRPFVTLKLASSFD------------GRIA 158
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
++G + WI+ +R +V +R DAV+VG TVR D+P LT R+ G P+R+V ++
Sbjct: 159 TATGQSKWITGPDARRKVHAMRAGHDAVLVGAGTVRADDPTLTVRNTGAVRQPVRVVASR 218
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI----LNSRDVMEYF 341
L++ L + DAP + GA QK+ A G + + D+ ++ D+M
Sbjct: 219 RLDIGAANLLATLGDAPLWLC--HGANVDAQKW-ADLGAKTLACDLQGRQIDPVDMMHKL 275
Query: 342 HDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA-- 399
G + E GG+LAAS + +GL+ ++ F A +G + P+ + LG+ + A
Sbjct: 276 AASGLTRVFCEGGGSLAASLLGAGLVDEIVGFTAGIALGAEGTPS-IGALGLDVLDDAPR 334
Query: 400 LDLIDICYEQVGPDML 415
DLI+ QVG D++
Sbjct: 335 FDLIE--TTQVGADIM 348
>gi|409422473|ref|ZP_11259570.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. HYS]
Length = 376
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 181/398 (45%), Gaps = 50/398 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
DA Y+ RA ++A K T P+P GC+I G+V GEG+ G AEV A+ G
Sbjct: 9 DAHYMARAIELARKGLYSTHPNPRVGCVI-VRDGQVVGEGWHVRAGEPHAEVYALRQAGE 67
Query: 105 FCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGA AY+ +EP HG + ALV+AG+ RVV +++P + GQ ++ L G++
Sbjct: 68 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLKRLADAGIE 127
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR +N + R +PF K AM+LD
Sbjct: 128 V-------ASGVLEAEART----LNPGFLKRMEHGLPFVRAKLAMSLD------------ 164
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------- 272
G+ A +SG + WI+ +R V LR RS V+ +V DN R+T R
Sbjct: 165 GRTAMASGESQWITGPAARSAVQRLRARSSVVLTSAESVLADNARMTVRGDELGLDPQTT 224
Query: 273 --GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
P+R+++ L +P +A + P +VVT A ++ A G E++
Sbjct: 225 ALALARAPLRVLIDGRLRVPLDAPFFQAG--PALVVTAAEADSRY----AQAGHELLRLP 278
Query: 331 ILNSR----DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPT 386
R +M RG +L E G L + GLI + FVA +I+G ++
Sbjct: 279 GSEGRVDLPALMLELAARGVNEVLVEAGAGLVGAFARQGLIDEYQIFVAGRILG--SSAR 336
Query: 387 PVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIP 424
P+ + + MSQA L VG D ++ +P P
Sbjct: 337 PLLDWPLETMSQAPYLQITEMRAVGDDWRVTAVPKPAP 374
>gi|407459713|ref|YP_006737816.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci M56]
gi|405785728|gb|AFS24473.1| riboflavin biosynthesis protein RibD [Chlamydia psittaci M56]
Length = 368
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA ++ +K A + P+P GC+I + G++ GEGY G AE +A+ +
Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKN-GRIIGEGYHEKAGQPHAEEKAIRSASESIE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
G+ Y+ +EP CH +T V+ L++ + V + + +P + G+ + +LR G+ V+
Sbjct: 70 GSEVYVTLEPC-CHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGIASLRKAGICVY 128
Query: 166 VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
E L + E + KS L ++ T P+ V K A TLD G++
Sbjct: 129 ---EGLGKEEAERSLKSYL-------YQRTHGKPWVVIKSAATLD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH----TPMRI 281
A G + WI+ +R V LR S A++VG TV +DNP LTAR G P+R+
Sbjct: 167 ADKDGQSQWITCPEARADVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR----DV 337
V+ +P EAN++ S ++ VT + + +K + GV+++ + +S+ ++
Sbjct: 227 VVDSKGVIPPEANIFH-STGKSLYVTTTQSSKDHRKKIEDLGVDLLVTESKDSKVNLHEL 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
M Y L +L E G L S + L + + ++ PKI+G + P
Sbjct: 286 MTYLSTTHTLQVLVEGGAVLHTSFLKERLANALVLYLGPKILGDQRKP 333
>gi|407801226|ref|ZP_11148070.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax sp. W11-5]
gi|407024663|gb|EKE36406.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax sp. W11-5]
Length = 367
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 185/395 (46%), Gaps = 41/395 (10%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
+ + D Y+ RA +A + T P+P GC++ G + GEG+ G AE A+
Sbjct: 1 MANSSDREYMSRALYLARRGLHTTDPNPRVGCVL-VRNGMIVGEGWHQRAGEPHAERHAL 59
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G RGAT Y+ +EP H T ALV+AG+ RVV +++P + GQ + L
Sbjct: 60 ATAGEQARGATCYVTLEPCS-HTGRTGPCADALVEAGVARVVAAMQDPNPQVAGQGLARL 118
Query: 158 RSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVL 217
R G++V + ++E+A ++ +N I R +P+ K AM++D
Sbjct: 119 RDAGIEV-------ECGVLEDAARA---LNPGFIRRMEQGLPWVRVKLAMSVD------- 161
Query: 218 SWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--- 274
G+ A +SG + WI+ +R+ V LR RS A+V G TV D P LT R
Sbjct: 162 -----GRTAMASGESQWITGAEAREDVQRLRARSSAIVTGIGTVLADAPSLTVRPATWQF 216
Query: 275 ---GHT----PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
G T P+R+VL + L P +A + +D +++T + L G EV+
Sbjct: 217 SDYGPTPVRQPLRVVLDRALRTPADAAVIQ-ADGECLILTAQ--ETSGAPALREAGAEVL 273
Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
D + R V+ RG +L E G LA + +++G + ++ ++AP ++G P
Sbjct: 274 AGD-WSPRQVLAELAARGCNEVLVEAGAELAGAFVAAGCVDELVVYMAPMLLGSSARPL- 331
Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
++ G+ M+ L QVG D+ + L P
Sbjct: 332 LALPGLDRMADKYLLTLRDTRQVGVDLRLCYALAP 366
>gi|418292847|ref|ZP_12904777.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379064260|gb|EHY77003.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 366
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 179/385 (46%), Gaps = 47/385 (12%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D A++ RA +A K T P+P GC+I + G++ GEG+ G AEV A+ G
Sbjct: 4 DHAWMARALQLARKGLYSTHPNPRVGCVI-VADGELVGEGWHVRAGEPHAEVHALRQAGE 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
RGATAY+ +EP +G ALV+AG+ RVV +++P + G ++ LRS G++
Sbjct: 63 RARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLKLLRSAGIE 122
Query: 164 VHVLGEDLQSKIIE-EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V S ++E EAR+ +NA I R S +P+ K AM+LD
Sbjct: 123 V-------ASGVLEGEARE----LNAGFIKRMESGLPYVRAKLAMSLD------------ 159
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH---------- 272
G+ A +SG + WI+ +R V LR RS V+ G +TV D RLT R
Sbjct: 160 GRTAMASGESQWITGPAARAEVQRLRARSSVVLTGADTVLMDAARLTVRGDELGLDAETT 219
Query: 273 --GGGHTPMRIVLTQTLNLPEEANLWDVSDA--PTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R+++ L +P +A + A T V GA L G E V+
Sbjct: 220 ALALQRPPLRVLVDGRLRVPLDAPFFQAGPALVATTVAGHEGAFAGAGHELLVLGQERVD 279
Query: 329 FDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L + RG +L E G L + S GLI + F+A K +G + P+
Sbjct: 280 LTAL-----LRELAARGANEVLVEAGPRLVGAFASLGLIDEYQVFMAAKFLG--STARPL 332
Query: 389 SELGMVEMSQALDLIDICYEQVGPD 413
EL + M++A +L + VG D
Sbjct: 333 LELPLECMTEARELKIVDIRAVGDD 357
>gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera versatilis 301]
gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera versatilis 301]
Length = 370
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 184/382 (48%), Gaps = 36/382 (9%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y+ A +A++ T P+P GC+I + ++ G+G G AEV A+ G+
Sbjct: 6 DHTYMTLALRLAERGLYTTQPNPRVGCVIVKNN-QIVGQGAHLKAGEPHAEVFALREAGA 64
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
GA AY+ +EP + HG V AL+ A + RVVV +++P + G ++ L++ G++
Sbjct: 65 NAEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAHGIE 124
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V ++E KS +N I R TS +P+ K A +LD G
Sbjct: 125 VEV-------GLMEAESKS---LNLGFISRMTSALPYVRCKVAASLD------------G 162
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIV 282
+ A ++G + WI+ + +R V R +S A+V G TV DNP + R G P+R++
Sbjct: 163 RTALNNGKSLWITGEPARLDVQHWRAQSCAIVTGIGTVLTDNPSMNVRLENTGRQPLRVI 222
Query: 283 LTQTLNLPEEANLWD---VSDAPTIVVTQRGARRKFQKYLASRGVEVV----EFDILNSR 335
+ L P + + + +S +P +V + A K L + G +++ E +N
Sbjct: 223 VDSNLQTPTDCKMLNPELLSLSPVLVAYAQDAHHK-ASALTATGAQLLHLPDESGRVNLH 281
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK-NAPTPVSELGMV 394
+++ R +L E G L + + +GL+ + + APK++G +SEL +
Sbjct: 282 ALLKNLASRDVNEVLLEAGQGLNGAFLQAGLVDEFIFYYAPKLMGADAKGMFAISEL--I 339
Query: 395 EMSQALDLIDICYEQVGPDMLI 416
EM QA DL Q+G D+ +
Sbjct: 340 EMQQATDLQIFDVRQIGQDIRV 361
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,007,872,762
Number of Sequences: 23463169
Number of extensions: 437455600
Number of successful extensions: 1061372
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3861
Number of HSP's successfully gapped in prelim test: 1417
Number of HSP's that attempted gapping in prelim test: 1043570
Number of HSP's gapped (non-prelim): 5960
length of query: 612
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 463
effective length of database: 8,863,183,186
effective search space: 4103653815118
effective search space used: 4103653815118
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)