BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039210
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 177/363 (48%), Gaps = 31/363 (8%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T +P G ++ G++ G G G AEV A+ G+ GA Y+ +EP
Sbjct: 30 GQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSH 88
Query: 121 HGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
+G + L+ +GI RV V +R+P + G+ + ++ G++V + + ++A
Sbjct: 89 YGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR------EGILADQA 142
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
+ +N +H + +P+ K A +LD GKIA S+G + WI+S+
Sbjct: 143 ER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIATSTGDSKWITSEA 186
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQTLNLPEEANLWDV 298
+R R +++VG TV+ DNP LT R P+R++L L++PE+A +
Sbjct: 187 ARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICD 246
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHDRGYLSILWECGGT 356
APT + T A + +K L++ GV + +E + + DV++ + G +S+ E G
Sbjct: 247 QIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSA 306
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LDLIDICYEQVGPDM 414
+ S + G ++ + APK+IGG +AP+ +S G M L DI Q+G D+
Sbjct: 307 VHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDIT--QIGRDI 364
Query: 415 LIS 417
++
Sbjct: 365 KLT 367
>pdb|2B3W|A Chain A, Nmr Structure Of The E.Coli Protein Ybia, Northeast
Structural Genomics Target Et24
Length = 168
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 14/158 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAAWPIK---VDGK-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR R P +R +WESVK +M +AL+ KF + L ++LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRD--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRALLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
+ LVE + +D +WG G G+G N LG LLM+LR +
Sbjct: 119 APAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQL 156
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 44/330 (13%)
Query: 58 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---GSFCRGATAYLN 114
K G +P+P G ++ G++ EG+ G AE A+E+ G RGAT +
Sbjct: 27 KGLGRVNPNPPVGAVVVKD-GRIIAEGFHPYFGGPHAERXAIESARKKGEDLRGATLIVT 85
Query: 115 MEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQS 173
+EP D HG + L+ ++GI VV+G R+P + G V R+ G++V ++
Sbjct: 86 LEPCDHHGKTPPCTDLIIESGIKTVVIGTRDP-NPVSGNGVEKFRNHGIEV------IEG 138
Query: 174 KIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAA 233
+ EE +K C I T + PF KYA TLD GKIA G +
Sbjct: 139 VLEEEVKKLCEF----FITYVTKKRPFVALKYASTLD------------GKIADHRGDSK 182
Query: 234 WISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEA 293
WI+ K R +V + R AV+VG TV +DNP+LT R G P+R++L + L +
Sbjct: 183 WITDKL-RFKVHEXRNIYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILDRKGVLSGKV 241
Query: 294 NLWDVSDAPTIVVTQRGARR---KFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSIL 350
+A IV T+ +K L+ VE ++ ++R S+L
Sbjct: 242 FRVFEENARVIVFTESEEAEYPPHVEKALSDCSVE----------SILRNLYERDIDSVL 291
Query: 351 WECGGTLAASAISSGLIHKVFAFVAPKIIG 380
E G + + + + VF F + KI G
Sbjct: 292 VEGGSKVFSEFLDHADV--VFGFYSTKIFG 319
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
T P+PN GC+I G++ GEGY G AEV A+ G +GATAY+ +EP HG
Sbjct: 48 THPNPNVGCVI-VKDGEIVGEGYHQRAGEPHAEVHALRXAGEKAKGATAYVTLEPCSHHG 106
Query: 123 DH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV-HVLGEDLQSKIIEEAR 180
AL+ AG+ RVV ++P + G+ + L+ G+ V H L EA
Sbjct: 107 RTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGL-------XXSEAE 159
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
+ +N + R + P+ K +LD G+ A +SG + WI+S +
Sbjct: 160 Q----LNKGFLKRXRTGFPYIQLKLGASLD------------GRTAXASGESQWITSPQA 203
Query: 241 RDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------------HGGGHTPMRIVLTQTL 287
R V LR +S A++ TV D+P LT R P+RIV+
Sbjct: 204 RRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN 263
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
+ + TQ +R + R + + E V+ + +
Sbjct: 264 RVTPVHRIVQQPGETWFARTQEDSREWPETV---RTLLIPEHKGHLDLVVLXXQLGKQQI 320
Query: 348 SILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+ +W E G TLA + + +GL+ ++ ++APK++ G +A + G+ +++ A
Sbjct: 321 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLL-GSDARGLCTLPGLEKLADAPQFKFKE 379
Query: 407 YEQVGPDMLI 416
VGPD+ +
Sbjct: 380 IRHVGPDVCL 389
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122
T P+PN GC+I G++ GEGY G AEV A+ G +GATAY+ +EP HG
Sbjct: 26 THPNPNVGCVIVKD-GEIVGEGYHQRAGEPHAEVHALRXAGEKAKGATAYVTLEPCSHHG 84
Query: 123 DH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQV-HVLGEDLQSKIIEEAR 180
AL+ AG+ RVV ++P + G+ + L+ G+ V H L EA
Sbjct: 85 RTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGL-------XXSEAE 137
Query: 181 KSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS 240
+ +N + R + P+ K +LD G+ A +SG + WI+S +
Sbjct: 138 Q----LNKGFLKRXRTGFPYIQLKLGASLD------------GRTAXASGESQWITSPQA 181
Query: 241 RDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-------------HGGGHTPMRIVLTQTL 287
R V LR +S A++ TV D+P LT R P+RIV+
Sbjct: 182 RRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN 241
Query: 288 NLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYL 347
+ + TQ +R + R + + E V+ + +
Sbjct: 242 RVTPVHRIVQQPGETWFARTQEDSREWPETV---RTLLIPEHKGHLDLVVLXXQLGKQQI 298
Query: 348 SILW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
+ +W E G TLA + + +GL+ ++ ++APK++ G +A + G+ +++ A
Sbjct: 299 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLL-GSDARGLCTLPGLEKLADAPQFKFKE 357
Query: 407 YEQVGPDMLI 416
VGPD+ +
Sbjct: 358 IRHVGPDVCL 367
>pdb|2AZN|A Chain A, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|B Chain B, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|C Chain C, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|D Chain D, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|E Chain E, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|F Chain F, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
Length = 219
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 8/188 (4%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA-RHGGGHTPM 279
L GK+A + + + IS + RV +R D + VG TV +D+PRLT + P+
Sbjct: 14 LDGKLATIN-NDSRISCEEDLIRVHKIRANVDGIXVGIGTVLKDDPRLTVHKIKSDRNPV 72
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA---RRKFQKYLASRGVEVVEFD--ILNS 334
RIV+ L +P A + + DA TI+ T + K K L GVEVV+ ++
Sbjct: 73 RIVVDSKLRVPLNARVLN-KDAKTIIATTEDTNEEKEKKIKILEDXGVEVVKCGRGKVDL 131
Query: 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV 394
+ + + +D+G SIL E GGTL GL+ +V ++APKI GGK APT V G
Sbjct: 132 KKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFK 191
Query: 395 EMSQALDL 402
+ + + L
Sbjct: 192 TVDECVKL 199
>pdb|2P4G|A Chain A, Crystal Structure Of A Pyrimidine Reductase-Like Protein
(Dip1392) From Corynebacterium Diphtheriae Nctc At 2.30
A Resolution
Length = 270
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDN----------PRLTARHGGG 275
A SG + +T D + LRG +DA+VVG T R++N + G
Sbjct: 48 ATLSGVSGPXGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRC 107
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPT----IVVTQRGARRKFQ-----KYLASRGVEV 326
P +L+++L + L+ D P+ +V+TQ+ A Q + L GVEV
Sbjct: 108 GLPKLTLLSKSLYFDFSSELFS-PDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEV 166
Query: 327 VEFDILNS--RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
+ + + + H R I E G ++ A+S G++ ++ +AP II +
Sbjct: 167 IVAPTSTNPLKIAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVES 226
Query: 385 P 385
P
Sbjct: 227 P 227
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
D C G A++ GI R VVG + + + + L+++G +V V+ ++ KI++
Sbjct: 95 DMCTG------AIIMYGIPRCVVGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKIMK 145
Query: 178 E 178
+
Sbjct: 146 Q 146
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 32 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 91
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
D C G A++ GI R VVG + + + + L+++G +V V+ ++ KI++
Sbjct: 92 DMCTG------AIIMYGIPRCVVGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKIMK 142
Query: 178 E 178
+
Sbjct: 143 Q 143
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
D C G A++ GI R VVG + + + + L+++G +V V+ ++ K+++
Sbjct: 95 DMCTG------AIIMYGIPRCVVGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKLMK 145
Query: 178 E 178
+
Sbjct: 146 Q 146
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 35 PIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
D C G A++ GI R VVG + + + + L+++G +V V+ ++ KI +
Sbjct: 95 DXCTG------AIIXYGIPRCVVGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKIXK 145
Query: 178 E 178
+
Sbjct: 146 Q 146
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
D C G A++ GI R V+G + + + + L+++G +V V+ ++ K+++
Sbjct: 95 DMCTG------AIIMYGIPRCVIGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKLMK 145
Query: 178 E 178
+
Sbjct: 146 Q 146
>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
L-Threonine And Amppnp
Length = 352
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPL--IHRATSRVPFSVFKYAMTLDVILPG-VLSW 219
Q+ + +D+ K++E A+ ++ PL + + T RVP V T+ V +P ++
Sbjct: 74 QLFEVAKDIPDKVLEIAQ---IVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIAL 130
Query: 220 MLTGK----IAASSGHAAWISSKT-SRDRVFDLRGRSDAVVVGGNT 260
L + IAA S + A S T + D + DL GR D ++ GG+T
Sbjct: 131 QLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVIIDGGHT 176
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 67 PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAGGSF----CRGATAYLNMEPG 118
P GCLI G V G G + T E+ +E G + T Y + P
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 119 D-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
+ C G A++ GI R V+G + + + + L+++G +V V+ ++ K+++
Sbjct: 95 EMCTG------AIIMYGIPRCVIGEN---VNFKSKGEKYLQTRGHEVVVVDDERCKKLMK 145
Query: 178 E 178
+
Sbjct: 146 Q 146
>pdb|3UX1|A Chain A, Structural Characterization Of Adeno-Associated Virus
Serotype 9
Length = 518
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 210 DVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDN 265
+ PG SW L G+ + + A S K DR F L G +++ G RDN
Sbjct: 282 EFAWPGASSWALNGRNSLMNPGPAMASHKEGEDRFFPLSG---SLIFGKQGTGRDN 334
>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
Sulfolobus Tokodaii
pdb|4E1B|A Chain A, Re-Refinement Of Pdb Entry 2eqa - Sua5 Protein From
Sulfolobus Tokodaii With Bound
Threonylcarbamoyladenylate
Length = 352
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPL--IHRATSRVPFSVFKYAMTLDVILPG-VLSW 219
Q+ + +D+ K++E A+ ++ PL + + T RVP V T+ V P ++
Sbjct: 74 QLFEVAKDIPDKVLEIAQ---IVWPGPLTFVLKKTERVPKEVTAGLDTVAVRXPAHPIAL 130
Query: 220 MLTGK----IAASSGHAAWISSKT-SRDRVFDLRGRSDAVVVGGNT 260
L + IAA S + A S T + D + DL GR D ++ GG+T
Sbjct: 131 QLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVIIDGGHT 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,482,470
Number of Sequences: 62578
Number of extensions: 774085
Number of successful extensions: 1879
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 26
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)