BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039210
(612 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 218/377 (57%), Gaps = 24/377 (6%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D ++RR +A + G T+P+P G +I ++ G+G+ G E+ A+ G
Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGD-EIVGQGFHPQAGQPHGEIFALWEAGD 62
Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+GAT Y+N+EP + G A++QAGI +VVVG+ +P + G+ + LR G++
Sbjct: 63 RAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIE 122
Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
V V E+ ++C +N R + PF +FKYAMTLD G
Sbjct: 123 VKVGVEE----------EACQRLNEAFCFRIKHQRPFGIFKYAMTLD------------G 160
Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
KIA + H++W++S ++R V LR + AV++GGNTVRRDNP LT G P+R+VL
Sbjct: 161 KIATAQAHSSWVTSSSARHWVHQLRSQCQAVIIGGNTVRRDNPLLTNHGVGEVNPLRVVL 220
Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
+++L+LP EA LWD A T+V+T++ R +L VE + + L VME +
Sbjct: 221 SRSLDLPIEAQLWDQDVAKTLVITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQ 280
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
R L +LWECGG LAA AI+ G + KV AF+APKIIGG APTPV ELG +M+QAL+L
Sbjct: 281 RNCLQVLWECGGILAAEAIAMGTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLT 340
Query: 404 DICYEQVGPDMLISGFL 420
D+ + +GPD L +G+L
Sbjct: 341 DLHCQAIGPDWLFTGYL 357
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus
pleuropneumoniae GN=ribD PE=3 SV=2
Length = 376
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 195/383 (50%), Gaps = 30/383 (7%)
Query: 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAV 99
F D Y+RRA +A + G+T+P+P GC+I + G++ EGY G AE AV
Sbjct: 10 FKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAV 68
Query: 100 EAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALR 158
GATAY+ +EP HG S L++ GI +V +G +P + G+ LR
Sbjct: 69 LHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLR 128
Query: 159 SQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLS 218
G++V ++ + EE C +N H ++ P+ + KYAMT D
Sbjct: 129 QAGVEV------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD-------- 170
Query: 219 WMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTP 278
GKIA SG + WI+ +++R RV R + A++VG +TV DNP L +R P
Sbjct: 171 ----GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQP 226
Query: 279 MRIVLTQTLNLPEEANLWDVS-DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR-- 335
+RIV L P + L + + T++ T +K +++ GV+V+ N R
Sbjct: 227 VRIVCDSQLRTPLDCQLVQTAKEYRTVIATVSDDLQKIEQF-RPLGVDVLVCKARNKRVD 285
Query: 336 --DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGM 393
D+++ + S+L E G +L SA+ SG++++V ++APK++GGK A TP+ G+
Sbjct: 286 LQDLLQKLGEMQIDSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGI 345
Query: 394 VEMSQALDLIDICYEQVGPDMLI 416
++ QA+ L E +G D+L+
Sbjct: 346 QQIDQAVKLKLKSTELIGEDILL 368
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain
VF5) GN=ribD PE=3 SV=1
Length = 356
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 30/377 (7%)
Query: 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEA 101
R D Y++ A +A K G+T P+P G ++ GK+ G GY G AEV A+
Sbjct: 3 REIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKE-GKIVGLGYHEKAGKPHAEVMALGQ 61
Query: 102 GGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ 160
G +GAT Y+ +EP G + A++++GI RVVV +P + G+ V LR+
Sbjct: 62 AGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNA 121
Query: 161 GLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWM 220
G++V V EEAR+ +N T P+ K+A TLD
Sbjct: 122 GIEVDV------GVCEEEARE----LNEDFFTYITQERPYITLKWAQTLD---------- 161
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GGGHTPM 279
GK+A +G + WI+SK SR LR + AV+VG NTV +D+P LT R P+
Sbjct: 162 --GKLATLTGSSKWITSKESRKVAHILRREATAVLVGVNTVIKDDPHLTVRFVPTEKQPV 219
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
RI+L L +P A + + +APTIV+T++ + + L +GV+V+ N +++++
Sbjct: 220 RIILDPELEVPLSAKVLNTEEAPTIVITKKENEK--AEKLKEKGVQVLILKGFNLKNILK 277
Query: 340 YFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399
+ + ++ E G S + G ++ F+APKI+G + +LG+ + ++
Sbjct: 278 KLKELEIMHLMVEGGPRTLTSFLKEGFFDRIVVFIAPKIMG---EGLSIGDLGIRSIEES 334
Query: 400 LDLIDICYEQVGPDMLI 416
L + E +G D++I
Sbjct: 335 LKVRKKKVENLGEDLVI 351
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 185/376 (49%), Gaps = 31/376 (8%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y++ A D+A + G T +P G ++ G++ G G G AEV A+ G+
Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ +GI RV V +R+P + G+ + ++ G++V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR- 122
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
+ + ++A + +N +H + +P+ K A +LD GKIA
Sbjct: 123 -----EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQ 285
S+G + WI+S+ +R R +++VG TV+ DNP LT R P+R++L
Sbjct: 162 TSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L++PE+A + APT + T A + +K L++ GV + +E + + DV++ +
Sbjct: 222 VLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LD 401
G +S+ E G + S + G ++ + APK+IGG +AP+ +S G M L
Sbjct: 282 EGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQ 341
Query: 402 LIDICYEQVGPDMLIS 417
DI Q+G D+ ++
Sbjct: 342 FTDIT--QIGRDIKLT 355
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 27/376 (7%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
Y+ A ++A + G T P+P G ++ ++ G G G AEV A+ GS +
Sbjct: 5 YMNTAIELARRGEGQTQPNPLVGAVVVKKR-QIVGMGAHLQYGEAHAEVHAINMAGSLAK 63
Query: 108 GATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
GA Y+ +EP +G + L+ ++GI RV + + +P + G+ + L G++V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKT 123
Query: 167 LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIA 226
L + EE +N +H + +P+ K A +LD GK A
Sbjct: 124 ---GLLRQQAEE-------LNKMFLHFMRTGLPYVTLKAAASLD------------GKTA 161
Query: 227 ASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQ 285
+G + WI+S+ +R R ++VG TV+ DNP LT R P+R++L
Sbjct: 162 TETGDSKWITSEAARLDAQQYRKSHQRILVGAGTVKADNPSLTCRLPDAVKQPVRVILDT 221
Query: 286 TLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHD 343
L +PE AN+ APT + T G+ + + L + G++V +E D ++ +V+ +
Sbjct: 222 KLTVPETANVLTDGAAPTWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAE 281
Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
G +S+ E G ++ S + +G ++ + AP +IGG AP+ +S G M L
Sbjct: 282 NGIMSVYVEGGASVHGSFVKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDVPHLQ 341
Query: 404 DICYEQVGPDMLISGF 419
Q+GPD+ ++
Sbjct: 342 FTQITQIGPDIKLTAI 357
>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=ribD PE=3 SV=1
Length = 375
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 181/379 (47%), Gaps = 43/379 (11%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++R+A + +K F P+P GC+I G V GEG+ G+ AEV AV+
Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVI-VKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLE 69
Query: 108 GATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165
GA ++ +EP CH T V L+++ + V VG+ +P + + V L++ G+ V+
Sbjct: 70 GAEVFVTLEPC-CHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVY 128
Query: 166 V-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK 224
V +G +EA+ S P +++ +P+ V K A +LD G+
Sbjct: 129 VGVGS-------QEAKTSL----QPYLYQRERGLPWVVMKTAASLD------------GQ 165
Query: 225 IAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--HGGGH--TPMR 280
A G + WIS + +R V LR S A++VG TV DNPRL+AR HG + P+R
Sbjct: 166 TADRGGSSQWISGELARADVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLR 225
Query: 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI--LNSRDVM 338
+V+ +P E+ ++D+S T+ T + +++ + L GVEV E ++ + ++
Sbjct: 226 VVVDSRGTVPLESRVFDLSSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLL 285
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP---------TPVS 389
Y +RG L +L E G L ++ L++ + PK +G + P
Sbjct: 286 RYLAERGCLQVLVEGGAQLHSAFWQQKLVNAGVIYWGPKFLGDQGQPMLRDLQLSLVTAE 345
Query: 390 ELGMVEMSQALDLIDICYE 408
+ + E S D + C+E
Sbjct: 346 HVRITETSLVRDSVKTCFE 364
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae
GN=ribD PE=3 SV=1
Length = 376
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 164/348 (47%), Gaps = 35/348 (10%)
Query: 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCR 107
++RRA +I +K P+P GC++ ++ GEG+ G AE A++
Sbjct: 11 FMRRAIEIGEKGRITAPPNPWVGCVVVQEN-RIIGEGFHAYAGGPHAEELAIQNASMPIS 69
Query: 108 GATAYLNMEPGDCHGD-HTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166
G+ Y+++EP G + L++ ++RV V + +P + GQ + LR G+QV+V
Sbjct: 70 GSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYV 129
Query: 167 -LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKI 225
+GE EA+ S P +++ T P+++ K A ++D G++
Sbjct: 130 GIGES-------EAQASL----QPYLYQRTHNFPWTILKSAASVD------------GQV 166
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTPMRI 281
A S G + WI+ +R V LR S A++VG TV D+P LTAR G P+R+
Sbjct: 167 ADSQGKSQWITCPEARHDVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRV 226
Query: 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS----RDV 337
VL ++P + ++D +PT+ VT + K L S V V+ + S V
Sbjct: 227 VLDSRGSVPPTSKVFD-KTSPTLYVTTERCPENYIKVLDSLDVPVLLTESTPSGVDLHKV 285
Query: 338 MEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
EY + L +L E G TL S + ++ + + P I+G + P
Sbjct: 286 YEYLAQKKILQVLVEGGTTLHTSLLKERFVNSLVLYSGPMILGDQKRP 333
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=ribD PE=3 SV=2
Length = 371
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 187/392 (47%), Gaps = 45/392 (11%)
Query: 39 KFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQA 98
+ S + ++R A + ++ F P+P GC+I G + G G+ G+ AEV A
Sbjct: 2 EVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVI-VKNGCIIGRGWHKGIGSPHAEVCA 60
Query: 99 VEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRA 156
+ S GA Y+ +EP CH T V L+++ ++ V + + +P + + V
Sbjct: 61 FQDQTSSLVGADVYVTLEPC-CHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVAR 119
Query: 157 LRSQGLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
L+ G+ V+V +G EEA+ S P +H+ + +P+ V K A +LD
Sbjct: 120 LKEAGISVYVGIGH-------EEAKASL----QPYLHQRETGLPWVVMKTAASLD----- 163
Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275
G+ + G + WIS + +R V LR S AV+VG TV DNPRL+AR G
Sbjct: 164 -------GQTSDRRGISQWISGEQARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSG 216
Query: 276 ----HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF-- 329
P+R+V+ ++P +A +W+ ++ T ++ + L RGVEV +
Sbjct: 217 DLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSP 276
Query: 330 DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389
++ + +++Y ++G L +L E G L ++ L++ + PK +G + +P +
Sbjct: 277 QQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWREHLVNAGVIYWGPKFLGDQGSPM-LR 335
Query: 390 ELGM-------VEMSQAL---DLIDICYEQVG 411
+L + V++++ D + C+E VG
Sbjct: 336 DLQLCLDNAEHVKITKTFLVGDSVKTCFECVG 367
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1
Length = 372
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 166/356 (46%), Gaps = 37/356 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+++A +A K + TSP+PN GC+I + + G G+ G K AE+ A++ G
Sbjct: 2 KDIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNN-NIIVGSGWHKKTGMKHAEIYALKTSG 60
Query: 104 SFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GATAY+ +EP G AL + GI+RVV+ +P + G V+ L+ G+
Sbjct: 61 EKAKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V I K + +N R T+ +P+ K A ++D
Sbjct: 121 LV----------TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSID------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIV 282
G+ A ++G + WI+S +R V +R +SDA++ T+ DNP LT R+ + + +
Sbjct: 159 GRTALNNGKSKWITSDKARHDVQHVREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKL 218
Query: 283 LTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV------VEFDILNSR- 335
L + ++ + I + + ++ +L + ++ ILN++
Sbjct: 219 LKHSKTFLKQPIRVIIDSKNRITPSHKCIKQPGLLFLIRIHSDNNIWPSHIKQIILNNKS 278
Query: 336 ------DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP 385
D+++ +IL E G +L++S + +I+++ ++APKI+G P
Sbjct: 279 KKIDLIDLVKMLAKYQINNILIEAGPSLSSSFLKLNIINELIIYIAPKILGNYAKP 334
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 174/364 (47%), Gaps = 60/364 (16%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G T P P G +I G++ G G G AEV A+ G GA + MEP +
Sbjct: 25 GTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRAGGLAAGAIVVVTMEPCNH 84
Query: 121 HGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH--VLGEDLQSKIIE 177
+G V+AL++A + VV + +P G A R L + GLQV VL E + + +
Sbjct: 85 YGKTPPCVNALIEARVGTVVYAVADPNGIAGGGAGR-LSAAGLQVRSGVLAEQVAAGPLR 143
Query: 178 EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISS 237
E +H+ + +P +KYA ++D G+ AA+ G + WISS
Sbjct: 144 E-----------WLHKQRTGLPHVTWKYATSID------------GRSAAADGSSQWISS 180
Query: 238 KTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTPMRIVLTQTLNLPEEA 293
+ +R + R +DA++VG TV D+P LTAR G P+R+V+ + ++P EA
Sbjct: 181 EAARLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEA 239
Query: 294 NLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWEC 353
+ + +A T+++ R + +V+ DR +L E
Sbjct: 240 RVLN-DEARTMMI------RTHEPM-----------------EVLRALSDR--TDVLLEG 273
Query: 354 GGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPD 413
G TLA + + +G I+++ A+VAP ++GG T V ++G+ ++ AL E+VGPD
Sbjct: 274 GPTLAGAFLRAGAINRILAYVAPILLGGPV--TAVDDVGVSNITNALRWQFDSVEKVGPD 331
Query: 414 MLIS 417
+L+S
Sbjct: 332 LLLS 335
>sp|P30176|YBIA_ECOLI Swarming motility protein YbiA OS=Escherichia coli (strain K12)
GN=ybiA PE=1 SV=1
Length = 160
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 14/158 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAAWPIK---VDGK-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR R P +R +WESVK +M +AL+ KF + L ++LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRD--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRALLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF 604
+ LVE + +D +WG G G+G N LG LLM+LR +
Sbjct: 119 APAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQL 156
>sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3
SV=1
Length = 372
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 163/353 (46%), Gaps = 43/353 (12%)
Query: 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
++D +++RA D+A K T+P+P+ GC++ G++ GEG+ + G AE A+
Sbjct: 6 SQDCVFMQRALDLAAKGQYTTTPNPSVGCVL-VKNGEIVGEGFHFKAGQPHAERVALAQA 64
Query: 103 GSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161
G +GATAY+ +EP +G + L++AG+ +V+ +++P + G+ ++ L G
Sbjct: 65 GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124
Query: 162 LQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWML 221
++ V + + ++A K +N + R +PF K AM+LD
Sbjct: 125 IESTV------NLLNDQAEK----INKGFLKRMRQGMPFVQLKLAMSLD----------- 163
Query: 222 TGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR---------- 271
G+ A +SG + WI+ +R V +R +S A++ TV D+P L R
Sbjct: 164 -GRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKT 222
Query: 272 ---HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE 328
P+R++L + L+ +V ++ F + E +
Sbjct: 223 EYKKEWLRQPVRVILDSQHRIQPTHKLFLTHSPVWLVSSEPRDLTGFPDF-----CEQII 277
Query: 329 FDILN-SRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380
F N +++M R ++ E G L+ S I + L+ ++ ++APK++G
Sbjct: 278 FPKENLLKELMRELGKRQINTLWVEAGANLSGSLIDAKLVDELIIYIAPKLLG 330
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 42/388 (10%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA +A + T P+PN GC+I G++ GEGY G AEV A+ G
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVI-VKDGEIVGEGYHQRAGEPHAEVHALRMAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+GATAY+ +EP HG AL+ AG+ RVV +++P + G+ + L+ G+
Sbjct: 61 EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGI 120
Query: 163 QVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLT 222
V ++ EA + +N + R + P+ K +LD
Sbjct: 121 DVS------HGLMMSEAEQ----LNKGFLKRMRTGFPYIQLKLGASLD------------ 158
Query: 223 GKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR----------- 271
G+ A +SG + WI+S +R V LR +S A++ TV D+P LT R
Sbjct: 159 GRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL 218
Query: 272 --HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF 329
P+RIV+ + + TQ +R + R + + E
Sbjct: 219 YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETV---RTLLIPEH 275
Query: 330 D-ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPV 388
L+ +M + SI E G TLA + + +GL+ ++ ++APK++ G +A
Sbjct: 276 KGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLL-GSDARGLC 334
Query: 389 SELGMVEMSQALDLIDICYEQVGPDMLI 416
+ G+ +++ A VGPD+ +
Sbjct: 335 TLPGLEKLADAPQFKFKEIRHVGPDVCL 362
>sp|Q83LU8|YBIA_SHIFL Swarming motility protein YbiA OS=Shigella flexneri GN=ybiA PE=3
SV=1
Length = 160
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G+ TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAARPIK---VDGN-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR+ R P +R +WESVK +M +AL+ KF + L +LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRN--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRVLLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
+ LVE + +D +WG G G+G N LG LLM+LR + E
Sbjct: 119 APAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK 160
>sp|Q0T6G3|YBIA_SHIF8 Swarming motility protein YbiA OS=Shigella flexneri serotype 5b
(strain 8401) GN=ybiA PE=3 SV=1
Length = 160
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G+ TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAARPIK---VDGN-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR+ R P +R +WESVK +M +AL+ KF + L +LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRN--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRVLLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
+ LVE + +D +WG G G+G N LG LLM+LR + E
Sbjct: 119 APAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK 160
>sp|Q323Z6|YBIA_SHIBS Swarming motility protein YbiA OS=Shigella boydii serotype 4
(strain Sb227) GN=ybiA PE=3 SV=1
Length = 160
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAAWPIK---VDGK-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR+ R P +R +WESVK +M +AL+ KF + L ++LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRN--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRALLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
+ LVE + +D +WG G G+G N LG LLM+LR + E
Sbjct: 119 APAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK 160
>sp|Q3Z3Y7|YBIA_SHISS Swarming motility protein YbiA OS=Shigella sonnei (strain Ss046)
GN=ybiA PE=3 SV=1
Length = 160
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV 506
+ +II FY T D YG FSNF+ PI+ V+G TW + EHY+QA KF + +
Sbjct: 13 QDTIINFYSTSDDYGDFSNFAAWPIK---VDGK-TWPTSEHYFQAQKFLD------EKYR 62
Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
E+I+ SP AAR+GR+ R P +R +WESVK +M +AL+ KF + L +LL+T
Sbjct: 63 EEIRRVSSPMVAARMGRN--RSKP--LRKNWESVKEQVMRKALRAKFEQHAELRVLLLAT 118
Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGES 608
+ LVE + +D +WG G G+G N LG LLM+LR + E
Sbjct: 119 APAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK 160
>sp|Q58085|RIB7_METJA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=arfC PE=1 SV=1
Length = 224
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 199 PFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGG 258
P+ + MTLD GK+A + + + IS + RV +R D ++VG
Sbjct: 9 PYIISNVGMTLD------------GKLATIN-NDSRISCEEDLIRVHKIRANVDGIMVGI 55
Query: 259 NTVRRDNPRLTA-RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA---RRK 314
TV +D+PRLT + P+RIV+ L +P A + + DA TI+ T + K
Sbjct: 56 GTVLKDDPRLTVHKIKSDRNPVRIVVDSKLRVPLNARVLN-KDAKTIIATTEDTNEEKEK 114
Query: 315 FQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFA 372
K L GVEVV+ ++ + +M+ +D+G SIL E GGTL GL+ +V
Sbjct: 115 KIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSV 174
Query: 373 FVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
++APKI GGK APT V G + + + L
Sbjct: 175 YIAPKIFGGKEAPTYVDGEGFKTVDECVKL 204
>sp|O24750|RIBD_CORAM Riboflavin biosynthesis protein RibD OS=Corynebacterium
ammoniagenes GN=ribD PE=3 SV=1
Length = 337
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 57/327 (17%)
Query: 61 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
G TSP+P G +I +++G++ G G G AEVQA+ GATA + +EP C
Sbjct: 31 GTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGKTEGATAVVTLEP--C 88
Query: 121 -HGDHTA--VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIE 177
H T AL++AGI V+ +P G + L G+ V L
Sbjct: 89 RHTGRTGPCTQALIEAGIKDVLFLHSDP-NPSAGGGEQVLVDAGINVVQLPS-------P 140
Query: 178 EARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISS 237
E L+ P + R P K+A T+D G AA+ G + WI+
Sbjct: 141 EGVPDALI---PWLKSVQLRRPHVTLKFAQTID------------GFTAAADGTSQWITG 185
Query: 238 KTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG----HTPMRIVLTQTLNLPEEA 293
+ +RD V R DA+++G T DNP LTAR+ G H P R+V+ +
Sbjct: 186 EMARDYVHADREHRDAIIIGTGTALIDNPSLTARYPDGTQREHQPRRVVIGRR------- 238
Query: 294 NLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWEC 353
N+ D DA + + R F++Y A+ + E +RDV L E
Sbjct: 239 NIADAGDAASNL-----NRLGFEQY-ATIDEALAELYATGARDV------------LVEG 280
Query: 354 GGTLAASAISSGLIHKVFAFVAPKIIG 380
G LA+ + GL+ + + AP ++G
Sbjct: 281 GAGLASGFANQGLVDWLQVYQAPLLLG 307
>sp|O26337|RIB7_METTH 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_235 PE=3 SV=1
Length = 216
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 28/213 (13%)
Query: 199 PFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGG 258
P+ + AMTLD GKIA ++G ++ IS + RV +LR DA++VG
Sbjct: 3 PYVILNAAMTLD------------GKIATATG-SSEISGEEDLRRVHELRRECDAIMVGI 49
Query: 259 NTVRRDNPRLTARH---GGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVT------QR 309
NTV D+PRLT G P+R+V+ P + + +APT++ +R
Sbjct: 50 NTVLADDPRLTVHRVDAAPGDNPVRVVVDSMARTPPHFRVLN-DEAPTVIGVSESAPPER 108
Query: 310 GARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHK 369
A + + + G V+ +L +E H G ++ E G TL S ++ GL+ +
Sbjct: 109 VAELRKRAEVVVAGTRRVDLHLL-----LERLHGMGIERLMLEGGSTLNYSMLTGGLVDE 163
Query: 370 VFAFVAPKIIGGKNAPTPVSELGMVEMSQALDL 402
V +AP I+GG++A T V G+ EM+ A+ L
Sbjct: 164 VRVCIAPMIVGGRDARTLVDGEGIDEMADAIRL 196
>sp|O66747|RIB7_AQUAE 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Aquifex aeolicus (strain VF5) GN=ribD2 PE=1
SV=1
Length = 224
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 226 AASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQ 285
ASS + + + + ++R + D ++VG TVR DNP LT R+ G P+RI+
Sbjct: 23 GASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETVRTDNPSLTVRYAKGKNPVRIIPCS 82
Query: 286 TLNLPEEANLWDVSDAPTIV-VTQRGARRKFQKY------LASRGVEVVEFDILNSRDVM 338
T N+P +AN+ + +APTI+ T+R + + +K + G E+V+FD L +
Sbjct: 83 TANVPLDANVLNTKEAPTIIATTERAPKERLEKIKELGAEVIVVGDELVDFDKL-----L 137
Query: 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398
+ RG S++ E G ++ + ++ ++ P I+GG+N PT V G ++
Sbjct: 138 PELYRRGIKSLMVEGGASINWEFVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKLKN 197
Query: 399 ALDL 402
L L
Sbjct: 198 LLHL 201
>sp|O28272|RIB7_ARCFU 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2007
PE=3 SV=1
Length = 219
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR--------- 271
L GKI+ S IS + V LR SDA++VG TV D+PRLT +
Sbjct: 13 LDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLTVKSAELREKRQ 72
Query: 272 -HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGA----RRKFQKY--LASRGV 324
G P+R+V+ +P A + + +A T+V R A R+ +K +A G
Sbjct: 73 KDGKEPNPLRVVVDSRCRVPLTARILN-DEARTLVAVSRIAPEEKVREVKKVAEVAVFGE 131
Query: 325 EVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNA 384
E VE L +E+ H +G ++ E GGTL +S IS L+ ++ + P IGG+++
Sbjct: 132 ERVELSAL-----LEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPIFIGGRDS 186
Query: 385 PT 386
PT
Sbjct: 187 PT 188
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGG 103
+D Y+ RA ++ TSP+PN GC+I + K+ GEG+ G AE+ A+ G
Sbjct: 2 KDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNK-KIVGEGWHKKYGENHAEINALNMAG 60
Query: 104 SFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGL 162
+G+TAY+ +EP + G A++Q+GI V++ +P + G+ V LR +G+
Sbjct: 61 EKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGI 120
Query: 163 QVHV 166
V +
Sbjct: 121 SVKI 124
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD1 PE=3 SV=2
Length = 147
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
D Y++RA +++ T+P+PN GC+I + + GEG+ G AE+ A+ G
Sbjct: 3 DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNN-IIVGEGWHEQAGKNHAEINALIMAGE 61
Query: 105 FCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
+G TAY+ +EP + G +AL+++GI RVV+ +P + G + L+ G+
Sbjct: 62 KAQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGIC 121
Query: 164 V 164
V
Sbjct: 122 V 122
>sp|P95872|RIB7_SULSO 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=SSO2097 PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPM 279
+ G++A +G++ +S + R ++R DAV+VG NTVR DNP LT ++G P+
Sbjct: 15 IDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTVKYGKNRRNPI 73
Query: 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVME 339
R+V+T++ NL ++ + T++ T K ++++ +GV V +F L+
Sbjct: 74 RVVVTRSFNLDPSYKIF-TTPPSTVIYTSNYESEKVEEFI-RKGVIVRKFLHLDDLLEDL 131
Query: 340 Y--FHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMV-EM 396
Y F+ R ++ E GG L I L ++ ++P+I G N + G + E
Sbjct: 132 YDNFNVR---RLMVEGGGHLIWWFIKDNLYDEIRITISPRIFG--NGVSFTQGEGFIGED 186
Query: 397 SQALDLID--IC 406
S L+LID IC
Sbjct: 187 SPRLELIDAKIC 198
>sp|Q8K9A3|RIBD2_BUCAP 5-amino-6-(5-phosphoribosylamino)uracil reductase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD2 PE=3 SV=1
Length = 217
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 221 LTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG------ 274
+ G+IA +G + WI+SK SR+ V R +S A++ T+ D+P L R+
Sbjct: 3 IDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKNTL 62
Query: 275 -------GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGV-EV 326
P+RI++ + + + + ++ R K K + ++
Sbjct: 63 STFPKKIFQQPIRIIIDSKNRVKKSHKIIQTKEKILLM------RLKLDKEIWPENTKQI 116
Query: 327 VEFDILNSRDVMEYFHDRGYLSI--LW-ECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383
+ + D++ G L I LW E G TL+ + LI ++ ++APKI+G +
Sbjct: 117 IIKPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEA 176
Query: 384 APTPV--SELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422
P + ++L + + + D DI Q+GPD+ I L+P
Sbjct: 177 KPLFIFNNQLKLFDCLK-FDFKDI--RQIGPDIRIK--LEP 212
>sp|Q5UR67|YR617_MIMIV Uncharacterized protein R617 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R617 PE=4 SV=1
Length = 170
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGD--VTWSSVEHYYQAHKFTGVNDPAAQDFVEK 508
++ + W P NF + +NG+ + S E Y AHK D +K
Sbjct: 19 VHIFSQWFPV----NFKEY------LNGEEFAEYVSAEQYMMAHKALLFGD---MFHFKK 65
Query: 509 IKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGG 568
I + LGR ++ +P + W+ K DI+ + KFS P L LL TG
Sbjct: 66 IMECSKQCKIKYLGRRVRNFNP----TIWDKHKFDIVTEGNRLKFSQNPDLMKRLLETGN 121
Query: 569 SVLVEASPHDLFWGGGREGE-----------GLNYLGRLLMQLRSE 603
+VEASP D WG G + G N LG++LM++R E
Sbjct: 122 KTIVEASPSDKIWGIGLTAQQAVNIPENKWPGKNLLGKVLMKIREE 167
>sp|P57534|RIBD2_BUCAI 5-amino-6-(5-phosphoribosylamino)uracil reductase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD2 PE=3 SV=1
Length = 207
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 229 SGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-------------G 275
+G + WI+SK +R V R +S ++ +T+ DNP L R+
Sbjct: 3 NGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNKIF 62
Query: 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSR 335
P+R+++ + N+ + I + + + RK ++ +E +N
Sbjct: 63 QHPIRVIIDSKNRVQPSHNI--IKTKGKIWLIRLKSDRKIWPKNTTQIIEKDHNKKINIF 120
Query: 336 DVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAP-TPVSELGMV 394
++++ ++ E G TL+ ++S LI ++ ++APKI+G + P + E +
Sbjct: 121 SLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEKLKI 180
Query: 395 EMSQALDLIDICYEQVGPDM 414
S +IC Q+GPD+
Sbjct: 181 SNSLQFKFKNIC--QIGPDI 198
>sp|Q6BII9|RIB7_DEBHA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RIB7 PE=3
SV=1
Length = 247
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 32/224 (14%)
Query: 193 RATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSD 252
R S PF YA +LD +IAA G IS ++ +R + D
Sbjct: 20 RPCSNRPFVTLTYAQSLD------------SRIAAKPGEQTKISHLETKTMTHYIRSKHD 67
Query: 253 AVVVGGNTVRRDNPRLTAR----HGGGHTPMRIVLTQTLNLP-EEANLWDVSD-----AP 302
++VG TV D+P+L R G TP I+L T ++ L V D AP
Sbjct: 68 GIMVGIGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAP 127
Query: 303 TIVVTQR-GARRKFQKYLASRGVEVVEFDILNSRD-------VMEYFHDRGYLSILWECG 354
I++ + R + + L + V +L + D +++ G SI+ E G
Sbjct: 128 FILIDETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGG 187
Query: 355 GTLAAS-AISSGLIHKVFAFVAPKIIGGKNAP-TPVSELGMVEM 396
++ + S +I + + P +G +P G++++
Sbjct: 188 ASIINDLLVYSKIIDSLIITIGPVFLGKDGVEVSPSGHAGLIDV 231
>sp|P34438|YL58_CAEEL Uncharacterized protein F44E2.8 OS=Caenorhabditis elegans
GN=F44E2.8 PE=4 SV=2
Length = 242
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 40/170 (23%)
Query: 476 VNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQH--PDWV 533
V+G+ ++SVEHYYQA K + + ++K +++P E + +++ ++ P
Sbjct: 76 VDGN-EYNSVEHYYQACKLYVL---TGEQSAAQLKASETPIEVKKATKNILKEAKIPAKK 131
Query: 534 RSDWESV-KIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGE---- 588
S W+ I ++ + KF+ L LL TG +L++ D ++ G +
Sbjct: 132 ISAWKDKDSIAVLKHVIYHKFNQNDELKVKLLDTGDKILIQTYIGDTYFAAGANAKYTST 191
Query: 589 -----------------------------GLNYLGRLLMQLRSEFLGESS 609
G N LG +LMQ+R E SS
Sbjct: 192 WVDRHVNQSLKYPENVVVDNVQYLPLVANGKNVLGWILMQVRDELRMRSS 241
>sp|Q9P4B8|RIB7_KLUMA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Kluyveromyces marxianus GN=RIB7 PE=3 SV=1
Length = 249
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 27/130 (20%)
Query: 194 ATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDA 253
A P+ + YA +LD +IA G +IS + ++ LR + DA
Sbjct: 25 ADKEKPYVILTYAQSLD------------SRIAKIKGTRTFISHEETKTMTHYLRYKFDA 72
Query: 254 VVVGGNTVRRDNPRLTAR---------HGGGHTPMRIVLTQTLNLP----EEANLWDVSD 300
+++G TV D+P L + H G +P I+L + L++ D
Sbjct: 73 IMLGCGTVMIDDPGLNCKWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGD 132
Query: 301 --APTIVVTQ 308
AP IVV +
Sbjct: 133 GKAPIIVVKE 142
>sp|B0K197|ISPH_THEPX 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Thermoanaerobacter sp. (strain X514) GN=ispH PE=3
SV=1
Length = 288
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 276 HTPMRI--VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE----F 329
H P I + + +N+ EE L +++ +++ G +K +LA +GVEV++ F
Sbjct: 42 HNPQVISDLSKKGVNVIEEEELDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPF 101
Query: 330 DILNSRDVMEYFHDRGYLSIL 350
V EY+H +GY I+
Sbjct: 102 VKKVQNIVYEYYH-KGYSIII 121
>sp|B0K9L0|ISPH_THEP3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=ispH PE=3 SV=1
Length = 288
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 276 HTPMRI--VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVE----F 329
H P I + + +N+ EE L +++ +++ G +K +LA +GVEV++ F
Sbjct: 42 HNPQVISDLSKKGVNVIEEEELDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPF 101
Query: 330 DILNSRDVMEYFHDRGYLSIL 350
V EY+H +GY I+
Sbjct: 102 VKKVQNIVYEYYH-KGYSIII 121
>sp|P77875|NIFK_HERSE Nitrogenase molybdenum-iron protein beta chain (Fragment)
OS=Herbaspirillum seropedicae GN=nifK PE=3 SV=1
Length = 356
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 39/233 (16%)
Query: 116 EPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175
EP C A V G+ ++ G+ N L + + + S V+G+DL S I
Sbjct: 109 EPTSCVSSSMTEDAAVFGGLNNMIDGLANALSLYKPEMIAV--STTCMAEVIGDDLDSFI 166
Query: 176 IEEARKSCLLV--NAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGK--------- 224
K + + P H P V + D L G+L+ GK
Sbjct: 167 KNAKDKGSVPAEYDVPFAH-----TPAFVGSHVTGYDNALKGILTHFWDGKAGTVPALER 221
Query: 225 -----IAASSGHAAWISSKTSR-DRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHT 277
I G ++ R+F L G +V + V R + GG T
Sbjct: 222 KPNERINFIGGFDGFVVGNLPEVKRIFKLMGVDGTIVCDPSEVWNTPTDGQFRMYSGGTT 281
Query: 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD 330
++ + DA VV Q + K KY+A +G EVV +
Sbjct: 282 KQEVI--------------EALDAKATVVFQEFSTLKTAKYIAEKGQEVVTLN 320
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 1.8, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 50 RRAADIADKSAGFTSPH---PNFGCLIATSTGKVAGEG----YLYAQGTKPAEVQAVEAG 102
++ DIA + A P GCLI G V G G + T E+ +E
Sbjct: 12 QKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENC 71
Query: 103 GSF----CRGATAYLNMEPGD-CHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRAL 157
G + T Y + P D C G A++ GI R VVG + + + + L
Sbjct: 72 GRLEGKVYKDTTLYTTLSPCDMCTG------AIIMYGIPRCVVGEN---VNFKSKGEKYL 122
Query: 158 RSQGLQVHVLGEDLQSKIIEE 178
+++G +V V+ ++ KI+++
Sbjct: 123 QTRGHEVVVVDDERCKKIMKQ 143
>sp|P33312|RIB7_YEAST 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB7 PE=1 SV=1
Length = 244
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 198 VPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVG 257
VPF YA +LD +++ G IS ++ LR D ++VG
Sbjct: 29 VPFVTLTYAQSLD------------ARVSRGPGVRTTISHPETKTMTHYLRHHHDGILVG 76
Query: 258 GNTVRRDNPRLTARHG---GGHTPMRIVL 283
TV DNP L + G ++P I++
Sbjct: 77 SGTVLADNPGLNCKWGPDPAANSPRPIII 105
>sp|Q757H6|RIB7_ASHGO 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RIB7 PE=3 SV=1
Length = 246
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 194 ATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDA 253
+++R+PF YA +LD +IA G IS + ++ LR
Sbjct: 24 SSARLPFVTLTYAQSLD------------ARIAKQKGERTVISHEETKTMTHYLRYHHSG 71
Query: 254 VVVGGNTVRRDNPRLTAR 271
+++G T D+P L R
Sbjct: 72 ILIGSGTALADDPGLNCR 89
>sp|B0JSP4|SYI_MICAN Isoleucine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843)
GN=ileS PE=3 SV=1
Length = 952
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 118/327 (36%), Gaps = 58/327 (17%)
Query: 14 QNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLI 73
Q+LK + K+ + P + A F ++ E +R D + + P +
Sbjct: 110 QSLKSSE-KEGLTPVKLRQKAHDFALQTQKEQCEGFKRYGVWGDWENPYLTLQPEYEAAQ 168
Query: 74 ATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQA 133
GK+A +GY+Y +G KP + S A A L G HT+ S V
Sbjct: 169 IAVFGKMALKGYIY-RGLKPVHW----SPSSQTALAEAELEYPEG-----HTSRSVYVAF 218
Query: 134 GITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV---LGEDLQSKIIEEARKSCLLVNAPL 190
IT V + P A+ L ++ L +L ++E + + L+V L
Sbjct: 219 PITSVSTPVLRPFLPNLSVAIWTTTPWTLPGNLAVALNPELNYSVVETSESNYLIVATDL 278
Query: 191 IHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR 250
+ + F +T+ + G+ + R +FD R
Sbjct: 279 VEKLAD-----TFNRTLTIKATVKGLE-----------------LEHTKYRHPLFD---R 313
Query: 251 SDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLP------EEAN---------- 294
A+++GG+ V D+ GH ++ Q LP ++ N
Sbjct: 314 ESAILIGGDYVTTDSGTGLVHTAPGHGQEDYIVGQRYGLPILSPVDDKGNFTAEAGQFAG 373
Query: 295 ---LWDVSDAPTIVVTQRGARRKFQKY 318
L D ++A + +T++GA K + Y
Sbjct: 374 LNVLKDANEAIILALTEKGALLKEEAY 400
>sp|Q17R00|EMX2_BOVIN Homeobox protein EMX2 OS=Bos taurus GN=EMX2 PE=2 SV=1
Length = 253
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 464 SNFSPHPI---QMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV---------EKIKT 511
S+ SPHP+ Q D + W + Y H+F G ND + + F+ ++I+T
Sbjct: 102 SSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQG-NDASPESFLLHNALARKPKRIRT 160
Query: 512 AKSPEEAARLGRSMQRQH 529
A SP + RL + ++ H
Sbjct: 161 AFSPSQLLRLEHAFEKNH 178
>sp|Q04744|EMX2_MOUSE Homeobox protein EMX2 OS=Mus musculus GN=Emx2 PE=2 SV=3
Length = 253
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 464 SNFSPHPI---QMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV---------EKIKT 511
S+ SPHP+ Q D + W + Y H+F G ND + + F+ ++I+T
Sbjct: 102 SSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQG-NDTSPESFLLHNALARKPKRIRT 160
Query: 512 AKSPEEAARLGRSMQRQH 529
A SP + RL + ++ H
Sbjct: 161 AFSPSQLLRLEHAFEKNH 178
>sp|Q04743|EMX2_HUMAN Homeobox protein EMX2 OS=Homo sapiens GN=EMX2 PE=1 SV=2
Length = 252
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 464 SNFSPHPI---QMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFV---------EKIKT 511
S+ SPHP+ Q D + W + Y H+F G ND + + F+ ++I+T
Sbjct: 101 SSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQG-NDTSPESFLLHNALARKPKRIRT 159
Query: 512 AKSPEEAARLGRSMQRQH 529
A SP + RL + ++ H
Sbjct: 160 AFSPSQLLRLEHAFEKNH 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,654,875
Number of Sequences: 539616
Number of extensions: 10229334
Number of successful extensions: 23810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 23704
Number of HSP's gapped (non-prelim): 60
length of query: 612
length of database: 191,569,459
effective HSP length: 123
effective length of query: 489
effective length of database: 125,196,691
effective search space: 61221181899
effective search space used: 61221181899
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)