Query 039210
Match_columns 612
No_of_seqs 476 out of 2749
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02807 diaminohydroxyphospho 100.0 1.6E-77 3.4E-82 638.8 39.5 363 17-420 10-380 (380)
2 PRK10786 ribD bifunctional dia 100.0 1.1E-75 2.5E-80 625.8 36.2 344 45-418 3-364 (367)
3 TIGR00326 eubact_ribD riboflav 100.0 5.2E-74 1.1E-78 610.4 35.4 341 49-416 1-343 (344)
4 PRK14719 bifunctional RNAse/5- 100.0 5.7E-55 1.2E-59 462.6 30.8 291 95-420 34-355 (360)
5 COG3236 Uncharacterized protei 100.0 9.7E-47 2.1E-51 336.3 14.8 150 447-607 13-162 (162)
6 COG0117 RibD Pyrimidine deamin 100.0 1.9E-45 4E-50 333.3 15.4 143 41-194 2-145 (146)
7 TIGR02464 ribofla_fusion conse 100.0 2.9E-44 6.3E-49 338.6 15.2 144 451-605 1-153 (153)
8 COG1985 RibD Pyrimidine reduct 100.0 2.5E-42 5.4E-47 342.8 23.2 211 196-421 1-217 (218)
9 PF08719 DUF1768: Domain of un 100.0 9.6E-43 2.1E-47 330.6 12.1 147 451-606 1-157 (157)
10 TIGR01508 rib_reduct_arch 2,5- 100.0 2.3E-39 5.1E-44 321.9 25.5 205 199-418 1-208 (210)
11 PRK05625 5-amino-6-(5-phosphor 100.0 2.6E-39 5.7E-44 323.2 26.0 208 198-420 2-214 (217)
12 TIGR00227 ribD_Cterm riboflavi 100.0 7.9E-39 1.7E-43 319.3 24.7 211 197-420 1-216 (216)
13 PRK14059 hypothetical protein; 100.0 6.7E-38 1.4E-42 318.7 23.8 209 194-421 26-249 (251)
14 PF01872 RibD_C: RibD C-termin 100.0 9.6E-34 2.1E-38 279.3 17.3 191 199-416 1-200 (200)
15 cd01284 Riboflavin_deaminase-r 100.0 1.7E-30 3.7E-35 233.3 13.6 113 49-161 1-115 (115)
16 PRK10860 tRNA-specific adenosi 100.0 3.5E-30 7.5E-35 246.8 12.8 135 44-196 12-159 (172)
17 PHA02573 30.3 hypothetical pro 99.9 2.9E-27 6.3E-32 219.1 13.2 128 457-604 9-148 (148)
18 TIGR02571 ComEB ComE operon pr 99.9 6.6E-27 1.4E-31 219.6 15.5 115 41-167 2-138 (151)
19 COG0590 CumB Cytosine/adenosin 99.9 2.1E-27 4.5E-32 223.7 10.9 136 40-192 3-151 (152)
20 PHA02588 cd deoxycytidylate de 99.9 1.4E-26 3.1E-31 221.3 15.5 112 45-167 3-153 (168)
21 cd01286 deoxycytidylate_deamin 99.9 1.1E-23 2.4E-28 194.0 11.4 93 45-146 1-121 (131)
22 COG2131 ComEB Deoxycytidylate 99.9 7.4E-23 1.6E-27 191.0 14.4 116 43-167 7-151 (164)
23 cd01285 nucleoside_deaminase N 99.9 7.1E-23 1.5E-27 182.9 10.1 92 49-147 1-101 (109)
24 PF00383 dCMP_cyt_deam_1: Cyti 99.9 1.8E-21 3.9E-26 171.2 9.2 93 43-142 2-102 (102)
25 cd00786 cytidine_deaminase-lik 99.8 4.2E-21 9.2E-26 167.5 9.5 88 49-142 1-95 (96)
26 KOG1018 Cytosine deaminase FCY 99.8 4.1E-20 8.9E-25 175.9 10.5 144 42-199 8-167 (169)
27 KOG3127 Deoxycytidylate deamin 99.8 1.6E-19 3.4E-24 173.9 11.7 121 40-168 62-208 (230)
28 cd00209 DHFR Dihydrofolate red 99.6 2.9E-14 6.3E-19 135.7 15.3 146 201-413 1-148 (158)
29 COG0262 FolA Dihydrofolate red 99.5 2.2E-13 4.7E-18 130.9 16.6 160 201-420 2-162 (167)
30 PF08010 Phage_30_3: Bacteriop 99.5 9.8E-14 2.1E-18 126.2 10.8 126 458-604 9-146 (146)
31 cd01283 cytidine_deaminase Cyt 99.3 5.5E-12 1.2E-16 113.1 10.3 90 50-146 2-103 (112)
32 PTZ00164 bifunctional dihydrof 99.0 1.1E-08 2.4E-13 113.8 16.1 157 199-414 8-178 (514)
33 PRK00478 scpA segregation and 98.9 7.5E-09 1.6E-13 115.1 13.8 154 201-423 2-155 (505)
34 PRK10769 folA dihydrofolate re 98.6 5.8E-07 1.3E-11 85.7 13.2 120 201-381 2-121 (159)
35 PF14439 Bd3614-deam: Bd3614-l 98.3 1.6E-06 3.5E-11 76.3 7.6 88 67-162 8-130 (136)
36 PF00186 DHFR_1: Dihydrofolate 98.3 4.2E-06 9.2E-11 80.0 10.6 143 201-411 2-145 (161)
37 TIGR01354 cyt_deam_tetra cytid 98.2 1.7E-05 3.7E-10 72.9 10.6 80 48-134 3-94 (127)
38 KOG2771 Subunit of tRNA-specif 98.1 4E-06 8.6E-11 86.9 6.6 100 38-146 160-306 (344)
39 KOG1324 Dihydrofolate reductas 97.5 0.0015 3.2E-08 62.5 12.1 116 223-375 14-139 (190)
40 PRK06848 hypothetical protein; 97.4 0.0018 3.9E-08 60.4 11.5 83 44-134 6-108 (139)
41 PRK12411 cytidine deaminase; P 96.7 0.023 5E-07 52.6 11.6 81 46-134 4-97 (132)
42 TIGR01355 cyt_deam_dimer cytid 96.6 0.011 2.4E-07 61.3 9.9 81 45-133 22-111 (283)
43 PRK05578 cytidine deaminase; V 96.6 0.023 5.1E-07 52.5 10.9 79 47-134 5-97 (131)
44 PRK09027 cytidine deaminase; P 96.1 0.032 7E-07 58.3 9.6 80 47-133 51-139 (295)
45 COG0295 Cdd Cytidine deaminase 96.0 0.037 8E-07 51.1 8.7 89 47-142 7-108 (134)
46 PLN02402 cytidine deaminase 95.9 0.043 9.3E-07 57.3 9.8 81 45-133 25-114 (303)
47 PRK08298 cytidine deaminase; V 95.9 0.062 1.3E-06 50.0 9.8 82 45-136 4-102 (136)
48 KOG0833 Cytidine deaminase [Nu 95.5 0.18 3.9E-06 48.2 11.4 73 65-143 40-126 (173)
49 PLN02182 cytidine deaminase 94.7 0.22 4.7E-06 52.8 10.4 65 64-134 63-143 (339)
50 PF08210 APOBEC_N: APOBEC-like 94.7 0.2 4.4E-06 49.2 9.6 103 65-168 22-146 (188)
51 PRK09027 cytidine deaminase; P 93.8 0.49 1.1E-05 49.6 10.6 94 34-134 178-285 (295)
52 PF14437 MafB19-deam: MafB19-l 92.1 0.28 6E-06 45.9 5.3 48 92-144 81-136 (146)
53 PLN02402 cytidine deaminase 87.2 1.8 3.8E-05 45.6 7.2 55 46-102 193-251 (303)
54 TIGR01355 cyt_deam_dimer cytid 84.5 2.8 6.2E-05 43.7 7.2 55 46-102 175-233 (283)
55 PF13344 Hydrolase_6: Haloacid 70.6 12 0.00027 32.6 6.1 68 299-366 29-100 (101)
56 PF08973 TM1506: Domain of unk 68.9 65 0.0014 30.0 10.6 94 49-167 1-94 (134)
57 COG2185 Sbm Methylmalonyl-CoA 67.1 10 0.00022 35.6 4.9 76 295-371 35-120 (143)
58 PF14440 XOO_2897-deam: Xantho 62.2 4 8.6E-05 37.1 1.2 55 89-145 43-102 (118)
59 PF08211 dCMP_cyt_deam_2: Cyti 60.6 25 0.00055 32.2 6.1 64 38-102 26-92 (124)
60 PF14431 YwqJ-deaminase: YwqJ- 56.6 13 0.00029 33.9 3.7 40 91-135 66-125 (125)
61 KOG1251 Serine racemase [Signa 40.5 1.7E+02 0.0036 30.3 8.8 95 276-373 71-180 (323)
62 COG0074 SucD Succinyl-CoA synt 37.5 2.1E+02 0.0045 30.1 9.1 29 71-99 2-30 (293)
63 cd02071 MM_CoA_mut_B12_BD meth 35.0 1.2E+02 0.0026 27.2 6.4 38 333-371 66-107 (122)
64 TIGR01501 MthylAspMutase methy 34.6 84 0.0018 29.2 5.3 16 334-349 69-84 (134)
65 PRK13907 rnhA ribonuclease H; 33.0 1.2E+02 0.0026 27.2 6.1 35 68-102 18-52 (128)
66 TIGR00365 monothiol glutaredox 27.3 2.4E+02 0.0052 24.2 6.7 71 300-370 11-96 (97)
67 cd08551 Fe-ADH iron-containing 25.5 1.9E+02 0.0042 31.1 7.1 58 302-359 25-94 (370)
68 COG1212 KdsB CMP-2-keto-3-deox 24.8 1.8E+02 0.0039 29.7 6.0 41 121-167 26-69 (247)
69 cd08172 GlyDH-like1 Glycerol d 24.7 1.9E+02 0.0041 30.9 6.8 81 301-381 24-112 (347)
70 PF04263 TPK_catalytic: Thiami 24.6 1.8E+02 0.004 26.4 5.7 44 312-355 48-94 (123)
71 cd03028 GRX_PICOT_like Glutare 24.0 3.9E+02 0.0085 22.4 7.4 68 300-367 7-89 (90)
72 TIGR00640 acid_CoA_mut_C methy 23.9 3.2E+02 0.0069 25.1 7.2 15 334-348 70-84 (132)
73 PRK02261 methylaspartate mutas 23.9 1.3E+02 0.0028 27.9 4.7 35 317-351 25-60 (137)
74 cd06386 PBP1_NPR_C_like Ligand 23.4 4.9E+02 0.011 28.0 9.8 64 315-379 160-232 (387)
75 TIGR03151 enACPred_II putative 23.4 3.3E+02 0.0072 28.8 8.2 51 300-353 87-137 (307)
76 TIGR00355 purH phosphoribosyla 22.6 1.9E+02 0.0042 32.8 6.4 84 71-166 414-503 (511)
77 cd08186 Fe-ADH8 Iron-containin 22.2 2.5E+02 0.0053 30.6 7.2 59 301-359 27-98 (383)
78 PRK06015 keto-hydroxyglutarate 21.8 2.7E+02 0.0059 27.6 6.7 27 236-262 38-64 (201)
79 PF02579 Nitro_FeMo-Co: Dinitr 21.4 2.2E+02 0.0048 23.6 5.3 26 316-341 67-92 (94)
80 COG1979 Uncharacterized oxidor 21.3 2.8E+02 0.006 29.9 6.9 87 276-366 7-108 (384)
No 1
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=1.6e-77 Score=638.80 Aligned_cols=363 Identities=27% Similarity=0.465 Sum_probs=327.6
Q ss_pred hhhcCCCCCCCccccCCCcccccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHH
Q 039210 17 KDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV 96 (612)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~ 96 (612)
..-+..++|...++.+.++. ++|++||++|+++|+++.+.++|||+|||||| +||+||++|||...+.+|||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~------~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV-~~g~Ii~~g~n~~~g~~HAEi 82 (380)
T PLN02807 10 AESRRFGRRTSVRCSARAAG------DDDSFYMRRCVELARKAIGCTSPNPMVGCVIV-KDGRIVGEGFHPKAGQPHAEV 82 (380)
T ss_pred hhccccCCcceeEEecCCCC------chHHHHHHHHHHHHHhhcccCCCCCCEEEEEE-ECCEEEEEEeCCCCCCcCHHH
Confidence 34567888999999988853 67899999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHccCCCCCcEEEEcCCCCCCCCch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHH
Q 039210 97 QAVEAGGSFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI 175 (612)
Q Consensus 97 ~Ai~~a~~~~~g~tlYvTlEPC~~~g~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~ 175 (612)
+||++|+..++|||||||||||+||||| ||+++|+++||+|||||..||++.+.|+|+++|+++||+|+.++++
T Consensus 83 ~Ai~~a~~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~V~~g~~~----- 157 (380)
T PLN02807 83 FALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEVTVGVEE----- 157 (380)
T ss_pred HHHHHhhhhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCEEEeCcCH-----
Confidence 9999999999999999999999999999 5999999999999999999999999999999999999999887644
Q ss_pred HHHHHHhhhhcccccccccccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEE
Q 039210 176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVV 255 (612)
Q Consensus 176 l~~~~~e~~~l~~~f~~~~~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~Dail 255 (612)
+||.+||+.||++..++||||++|+|+||| |+|+..+|.+.| .++.++|++|+++||||
T Consensus 158 -----~e~~~l~~~f~~~~~~~rP~V~lK~A~SlD------------Gkia~~~g~s~~----~s~~~vh~lRa~~DAIl 216 (380)
T PLN02807 158 -----ELCRKLNEAFIHRMLTGKPFVTLRYSMSMN------------GCLLNQIGEGAD----DAGGYYSQLLQEYDAVI 216 (380)
T ss_pred -----HHHHHHHHHHHHHHhhccccEEEEEEEcCC------------CCeeCCCCCChh----hhhHHHHHHHhhCCEEE
Confidence 899999999999999999999999999999 999999998875 46678999999999999
Q ss_pred eccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCccccc-CCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCH
Q 039210 256 VGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS 334 (612)
Q Consensus 256 vG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~-~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl 334 (612)
+| +|++.|||.|++|.++.++|+|||+|+++++|.+.++|+. ...|+||+++.... ..+.|+..|++++....+|+
T Consensus 217 VG-~Tv~~DnP~Lt~R~~~~~~PiRVVld~~l~~p~~~~i~~~~~~~~~iv~t~~~~~--~~~~l~~~gv~vv~~~~~dl 293 (380)
T PLN02807 217 LS-SALADADPLPLSQEAGAKQPLRIIIARSESSPLQIPSLREESAAKVLVLADKESS--AEPVLRRKGVEVVVLNQINL 293 (380)
T ss_pred Ec-CEeeccCCCCccCCCCCCCCEEEEEcCCCCCCCcceecccCCCCCEEEEECCchh--hHHHHHhCCeEEEECCCCCH
Confidence 99 9999999999999876689999999999999999999963 45689999866422 34568889999886666899
Q ss_pred HHHHHHHHHcCCCeEEEee------cHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEE
Q 039210 335 RDVMEYFHDRGYLSILWEC------GGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE 408 (612)
Q Consensus 335 ~~~l~~L~~~g~~~IlveG------G~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~ 408 (612)
.++++.|+++|+++||||| |++|+++||+++||||+++|++|+++|+...++++ ..+.+..+|++++++
T Consensus 294 ~~iL~~L~~~Gi~svLVEGG~~~~~G~~L~~sfl~~~LvDei~~yiAP~ilG~~~~~~~~-----~~~~~~~~l~~~~~~ 368 (380)
T PLN02807 294 DSILDLCYQRGLCSVLLDLRGNVGGLESLLKDALEDKLLQKVVVEVLPFWSGSQGQSIAS-----FGGSQSFKLKRLTSR 368 (380)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHHHHCCCccEEEEEEcCceecCCCCcccc-----cChhhCcccEeeeEE
Confidence 9999999999999999999 89999999999999999999999999985555432 345677899999999
Q ss_pred EeCCCeEEEEEe
Q 039210 409 QVGPDMLISGFL 420 (612)
Q Consensus 409 ~~g~dvv~~~y~ 420 (612)
.+|+|+++.+|+
T Consensus 369 ~~g~Dv~l~~~~ 380 (380)
T PLN02807 369 EVGGSVVLEGYF 380 (380)
T ss_pred EECCeEEEEEEC
Confidence 999999887763
No 2
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=1.1e-75 Score=625.79 Aligned_cols=344 Identities=29% Similarity=0.481 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCCch
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDH 124 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~ 124 (612)
|++||++|+++|+++.+.++|||||||||| +||+||++|||...+++|||++||++|+..++|||||||||||+|+|||
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g~~HAE~~ai~~a~~~~~g~tlyvTlEPC~~~g~t 81 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRT 81 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEE-eCCEEEEEEeCCCCCCCCHHHHHHHHHhhhcCCCEEEEecCCccCCCCC
Confidence 788999999999999888899999999999 7999999999999999999999999999999999999999999999999
Q ss_pred -hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccceee
Q 039210 125 -TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVF 203 (612)
Q Consensus 125 -~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~Vi~ 203 (612)
||+++|+++||+|||||..||++.+.|+|+..|+++||+|+.++ ++ +||.++++.||++.+++||||++
T Consensus 82 ~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~-------~~---~e~~~l~~~f~~~~~~~rP~V~~ 151 (367)
T PRK10786 82 PPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL-------MM---SEAEALNKGFLKRMRTGFPYIQL 151 (367)
T ss_pred hHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCC-------cH---HHHHHHHHHHHHHhhcccceEEE
Confidence 59999999999999999999999999999999999999998765 44 89999999999999999999999
Q ss_pred eeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCC---------
Q 039210 204 KYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG--------- 274 (612)
Q Consensus 204 k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~--------- 274 (612)
|+|+||| |+|+..+|.+.|||+++++.++|++|+.+||||+|++|++.|||+|++|...
T Consensus 152 k~A~SlD------------Gkia~~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~ 219 (367)
T PRK10786 152 KLGASLD------------GRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALY 219 (367)
T ss_pred EEeecCC------------CCccCCCCcccccCCHHHHHHHHHHHhHCCEEEECcChHhhcCCCcccccccccccccccc
Confidence 9999999 9999999999999999999999999999999999999999999999999531
Q ss_pred ----CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEe----cCCCHHHHHHHHHHcCC
Q 039210 275 ----GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF----DILNSRDVMEYFHDRGY 346 (612)
Q Consensus 275 ----~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~----~~~dl~~~l~~L~~~g~ 346 (612)
.++|++||+|+++++|++.++|+. ..|+||+++...... ...+++.+.. ..+|+.++++.|+++|+
T Consensus 220 ~~~~~~~P~rvV~d~~g~l~~~~~~f~~-~~~~~i~~~~~~~~~-----~~~~~~~~~v~~~~~~vdl~~~L~~L~~~Gi 293 (367)
T PRK10786 220 PQENLRQPVRIVIDSQNRVTPEHRIVQQ-PGETWLARTQEDSRE-----WPETVRTLLLPEHNGHLDLVVLMMQLGKQQI 293 (367)
T ss_pred ccccCCCCcEEEEcCCCCCCchhhhhcC-CCCEEEEEcCchhhh-----hhcCceEEEEeCCCCCcCHHHHHHHHHhCCC
Confidence 258999999999999999999975 458888876543211 1236653322 36899999999999999
Q ss_pred CeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEE
Q 039210 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418 (612)
Q Consensus 347 ~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~ 418 (612)
++||||||++|+++|+++|||||++++++|+++|++ +.+.|.+.++..+.+..+|++.+++.+|+|+++.+
T Consensus 294 ~~l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~g~D~~~~~ 364 (367)
T PRK10786 294 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSD-ARGLCTLPGLEKLADAPQFKFSEIRHVGPDVCLHL 364 (367)
T ss_pred CEEEEeeCHHHHHHHHHCCCccEEEEEEcceeccCC-CcccccccCccChhhCcccEEeeEEEECCeEEEEE
Confidence 999999999999999999999999999999999984 45667767777778889999999999999998654
No 3
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=100.00 E-value=5.2e-74 Score=610.38 Aligned_cols=341 Identities=36% Similarity=0.612 Sum_probs=315.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCCch-hHH
Q 039210 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDH-TAV 127 (612)
Q Consensus 49 M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~-~C~ 127 (612)
|++|+++|+++.+.++|||||||||| +||+||++|||...+++|||++||++|+..++|||||||||||+|+||| ||+
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv-~~~~ii~~g~n~~~~~~HAE~~ai~~a~~~~~g~tlyvtlEPC~~~g~~~~C~ 79 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIV-KNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGATAYVTLEPCSHQGRTPPCA 79 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEE-eCCEEEEEeeCCCCCCCCHHHHHHHHhccccCCcEEEEeCCCCCCCCCCcHHH
Confidence 89999999999998899999999999 5999999999999999999999999999999999999999999999999 599
Q ss_pred HHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccceeeeeec
Q 039210 128 SALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207 (612)
Q Consensus 128 ~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~Vi~k~A~ 207 (612)
++|+++||+|||||..||++.+.|.++++|+++||+|+.+++ + +||.++++.||.+.+++||||++++|+
T Consensus 80 ~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~v~~~~~-------~---~e~~~l~~~f~~~~~~~rP~v~~~~a~ 149 (344)
T TIGR00326 80 EAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGIL-------K---EEAERLNKGFLKRMRTGLPYVQLKLAA 149 (344)
T ss_pred HHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcEEEeCCC-------H---HHHHHHHHHHHHhhhcCCCEEEEEEee
Confidence 999999999999999999999989899999999999987654 4 899999999999999999999999999
Q ss_pred cccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC-CCCeEEEEcCC
Q 039210 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMRIVLTQT 286 (612)
Q Consensus 208 SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~-~~P~~vVvd~~ 286 (612)
||| |+|+.++|.+.|++++.++.++|++|+.+|+||+|++||+.|||.|++|++.. .+|.+||+|++
T Consensus 150 SLD------------G~Ia~~~g~~~wi~~~~~~~~~~~lra~~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV~d~~ 217 (344)
T TIGR00326 150 SLD------------GKIATASGESKWITSEAARTDAQQLRAQSDAILVGGGTVKADNPALTARLDEATEQPLRVVLDTQ 217 (344)
T ss_pred CCC------------CCccccCCCccccCCHHHHHHHHHHHHHCCEEEEChhhHhHhCCcccccCCCCCCCCeEEEEcCC
Confidence 999 99999999999999999999999999999999999999999999999998753 57999999999
Q ss_pred CCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCC
Q 039210 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGL 366 (612)
Q Consensus 287 ~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gL 366 (612)
++++++.++|.. ..|+||+++.. .+.+.+...+++++....+|+.+++++|+++|+++||||||++|+++||++||
T Consensus 218 ~~~~~~~~~~~~-~~~~~V~s~~~---~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~g~~~ilveGG~~L~~~ll~~gL 293 (344)
T TIGR00326 218 LRIPEFAKLIPQ-IAPTWIFTTAR---DKKKRLEAFEVNIFPLEKVTIREVMTQLGKRGINSVLVEGGPNLLGSFLDEGL 293 (344)
T ss_pred CCCCCcchhhcC-CCCEEEEECCh---hhhhHHhhCCeEEecCCCCCHHHHHHHHHhCCCCEEEEeeHHHHHHHHHHCCC
Confidence 999998888873 67899998753 34456677888887666789999999999999999999999999999999999
Q ss_pred CcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEE
Q 039210 367 IHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416 (612)
Q Consensus 367 VDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~ 416 (612)
|||++++++|+++|+..++++|++.++..+....+|++++++.+|+|+++
T Consensus 294 VDEl~l~i~P~ilG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~d~~~ 343 (344)
T TIGR00326 294 VDELIIYIAPKLLGGTHAPGLCSEPGFQKMADALNFKFLEINQIGPDILL 343 (344)
T ss_pred CeEEEEEEccEEecCCCCccccccccccChhhcccceeeeEEEECCEEEe
Confidence 99999999999999877888888777877778889999999999999875
No 4
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=5.7e-55 Score=462.59 Aligned_cols=291 Identities=25% Similarity=0.372 Sum_probs=259.5
Q ss_pred HHHHHHHccCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHH-----HHHHHhCCcEEEEccc
Q 039210 95 EVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA-----VRALRSQGLQVHVLGE 169 (612)
Q Consensus 95 E~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g-----~~~l~~~gi~V~~~~~ 169 (612)
-..||++.|. +|.++|+|+|||+| |+.+|+.+||+|||+++ |||+ .|+| +++|+++||+| .++
T Consensus 34 d~~~l~~lgi--~g~~i~~s~~p~~~-----cad~ii~~gi~rVVi~~-D~d~--~G~~~~~~~~~~L~~aGi~V-~~~- 101 (360)
T PRK14719 34 DILSLKNLKI--NANFITVSNTPVFQ-----IADDLIAENISEVILLT-DFDR--AGRVYAKNIMEEFQSRGIKV-NNL- 101 (360)
T ss_pred HHHHHHHcCC--CCcEEEEeCCchHH-----HHHHHHHcCCCEEEEEE-CCCC--CCCccchHHHHHHHHCCCEE-Eee-
Confidence 4668998775 58999999999976 99999999999999999 9998 4444 99999999999 444
Q ss_pred chhhHHHHHHHHhhhhcccccccc-------cc-----------cCccceeeeeeccccccccccccccccCceecCCCC
Q 039210 170 DLQSKIIEEARKSCLLVNAPLIHR-------AT-----------SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGH 231 (612)
Q Consensus 170 ~~~~~~l~~~~~e~~~l~~~f~~~-------~~-----------~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~ 231 (612)
++ +||+.+|+.|++. ++ ++||||++|+|+||| |+||+.+|.
T Consensus 102 ------l~---~e~~~l~~~~~~~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLD------------GkIA~~~G~ 160 (360)
T PRK14719 102 ------IR---KEIIKYSRGDLKDIESLYPYISRRININSDLSDIMLPYVISNVGMTLD------------GKLATIEND 160 (360)
T ss_pred ------hH---HHHHHHhHHhhhcchhhhhhheeccccccccccCCCCeEEEEEEEcCc------------CcccCCCCC
Confidence 44 8999999987665 66 789999999999999 999999999
Q ss_pred cccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCC---CCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEc
Q 039210 232 AAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG---GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQ 308 (612)
Q Consensus 232 ~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~---~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~ 308 (612)
+. ||+++++.++|++|+.+||||||++|++.|||+|++|.. .+++|+|||+|+++++|+++++|+. ..|+||+|+
T Consensus 161 s~-IT~~~ar~~vh~lRa~~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RVVlD~~l~lp~~~~lf~~-~~~~ii~t~ 238 (360)
T PRK14719 161 SR-ISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLNARVLNK-DAKTVIATT 238 (360)
T ss_pred CC-cCCHHHHHHHHHHHHHCCEEEECcchHhhcCCCCccccccccCCCCCEEEEEeCCCCCCcchhhhcC-CCCEEEEEc
Confidence 98 999999999999999999999999999999999999954 3589999999999999999999975 458999997
Q ss_pred CCcc---hHHHHHHHhCCcEEEEe--cCCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCC
Q 039210 309 RGAR---RKFQKYLASRGVEVVEF--DILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKN 383 (612)
Q Consensus 309 ~~~~---~~~~~~l~~~gv~vi~~--~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~ 383 (612)
..++ .++.+.+.+.|++++.+ ..+|+.++++.|+++|+++||||||++|+++|+++|||||+++|++|+++|++.
T Consensus 239 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~gi~svlVEGG~~l~~sfl~~~LvDel~l~iaP~ilGg~~ 318 (360)
T PRK14719 239 TPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGGAN 318 (360)
T ss_pred ccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhCCCCEEEEEeCHHHHHHHHHCCCceEEEEEEccEEECCCC
Confidence 6543 45567788899998765 368999999999999999999999999999999999999999999999999876
Q ss_pred CCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 384 APTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 384 ~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
+++++++.++..+....+|++.+++.+|+|+++.++.
T Consensus 319 ~~~~~~~~g~~~~~~a~~L~l~~~~~lg~di~l~y~~ 355 (360)
T PRK14719 319 SPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYRV 355 (360)
T ss_pred CcccccccCccccccccccEEeEEEEECCeEEEEEEE
Confidence 7878888788888888999999999999999876664
No 5
>COG3236 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=9.7e-47 Score=336.32 Aligned_cols=150 Identities=48% Similarity=0.843 Sum_probs=143.8
Q ss_pred CCceEEEeccCCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccc
Q 039210 447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQ 526 (612)
Q Consensus 447 ~~~~i~F~~~~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~ 526 (612)
.+.+||||+.++|||+||||+|+||.++ |.+|||+|||||++||..+.|+ .+++.|+++.+|.+||.|||.+.
T Consensus 13 ~~~~iyFy~t~~~ygcFSnf~~~~~k~~----G~~~~taEhY~~a~K~~~~~D~---~~~~aIlaarsP~EAkaLGR~vs 85 (162)
T COG3236 13 QDTYIYFYSTSDPYGCFSNFAPWPIKVD----GKTWPTAEHYFQAQKFLEFLDP---AYREAILAARSPMEAKALGRDVS 85 (162)
T ss_pred cceEEEEEeccCCCccccccCCCceeec----CeecccHHHHHHHHHHHhcCCH---HHHHHHHhcCChHHHHHhccccc
Confidence 5689999999999999999999999998 9999999999999999999997 56899999999999999999998
Q ss_pred cCCCCcCccchHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCCCCCceeecCCCCCccHhhHHHHHHHHHHhc
Q 039210 527 RQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLG 606 (612)
Q Consensus 527 ~~~~~~~~~~W~~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~~D~~WG~g~~~~G~N~LG~iLM~vR~~l~~ 606 (612)
+| .|++|+.+|..+|++|++.||.||.+||++||+|||..|||+++.|.|||||.+++|+|+||.+||+||++|+.
T Consensus 86 ~~----lr~~W~~vr~~V~~ea~~~KF~q~~~LRe~LL~Tgd~vLVE~s~~D~~WG~G~~~~G~N~LG~~LMevRerl~~ 161 (162)
T COG3236 86 GF----LRKNWESVRVQVMREALLAKFLQHADLRELLLATGDAVLVEASPNDAIWGIGGDGKGKNLLGYALMEVRERLAI 161 (162)
T ss_pred cc----chhchHHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCeeEEecCCCcceeeccCCccchhHHHHHHHHHHHHHhc
Confidence 64 77999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 039210 607 E 607 (612)
Q Consensus 607 ~ 607 (612)
+
T Consensus 162 e 162 (162)
T COG3236 162 E 162 (162)
T ss_pred C
Confidence 4
No 6
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-45 Score=333.25 Aligned_cols=143 Identities=37% Similarity=0.625 Sum_probs=136.1
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCC
Q 039210 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120 (612)
Q Consensus 41 ~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~ 120 (612)
.+..|+.||++|+++|+++.+.|.|||+|||||| +||+||++|||.+.|.+|||++||++|++.++|+|+|||||||||
T Consensus 2 ~~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV-~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~~a~Gat~yVTLEPCsH 80 (146)
T COG0117 2 SSELDERYMERALELAEKGQGTTSPNPSVGCVIV-KDGEIVGEGYHEKAGGPHAEVCALRMAGEAARGATAYVTLEPCSH 80 (146)
T ss_pred cchHHHHHHHHHHHHHHhcCCcCCCCCceeEEEE-ECCEEEeeeecCCCCCCcHHHHHHHHcCcccCCCEEEEEecCccc
Confidence 4557999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhccccccccc
Q 039210 121 HGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRA 194 (612)
Q Consensus 121 ~g~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~ 194 (612)
|||| ||+.+|+.+||+|||+|..||||.++|+|+.+|+++||+|+.++ |+ +|+..++++|+.+.
T Consensus 81 ~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gi-------l~---~e~~~l~~~f~~~~ 145 (146)
T COG0117 81 YGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGI-------LE---EEAEKLNEGFLKRM 145 (146)
T ss_pred CCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEeh-------hH---HHHHHHHHHHHccc
Confidence 9999 59999999999999999999999999999999999999999876 44 89999999999864
No 7
>TIGR02464 ribofla_fusion conserved hypothetical protein, ribA/ribD-fused. This model describes a sequence region that occurs in at least three different polypeptide contexts. It is found fused to GTP cyclohydrolase II, the RibA of riboflavin biosynthesis (TIGR00505), as in Vibrio vulnificus. It is found fused to riboflavin biosynthesis protein RibD (TIGR00326) in rice and Arabidopsis. It occurs as a standalone protein in a number of bacterial species in varied contexts, including single gene operons and bacteriophage genomes. The member from E. coli currently is named YbiA. The function(s) of members of this family is unknown.
Probab=100.00 E-value=2.9e-44 Score=338.56 Aligned_cols=144 Identities=49% Similarity=0.850 Sum_probs=137.2
Q ss_pred EEEeccCCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccccCCC
Q 039210 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHP 530 (612)
Q Consensus 451 i~F~~~~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~~~~~ 530 (612)
|+||+++++|++||||||+||.++ |++|||+||||||+||..++|+ +++++|+.+.+|.+||++||++.++
T Consensus 1 i~F~~~~~~~~~lSn~~p~~f~~~----g~~y~s~Ehy~qa~K~~~~~d~---~~~~~I~~~~sp~~ak~lgr~~~~~-- 71 (153)
T TIGR02464 1 ILFYGTWDTYGCFSNFYPSPFTVD----GVTFPTSEHYYMAQKARLFGDE---EIAEEILEAKTPEEAKRLGRKVRGF-- 71 (153)
T ss_pred CcccCCCCCCcccccCCCCCeEEC----CEEeCCHHHHHHHhchhcCCCH---HHHHHHHhCCCHHHHHHHhCcccCC--
Confidence 689999999999999999999998 8999999999999999999886 6789999999999999999998754
Q ss_pred CcCccchHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCCCCCceeecCCCC---------CccHhhHHHHHHH
Q 039210 531 DWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGE---------GLNYLGRLLMQLR 601 (612)
Q Consensus 531 ~~~~~~W~~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~~D~~WG~g~~~~---------G~N~LG~iLM~vR 601 (612)
.+++|+++++++|++||++||+|||+||++||+||++.|||+|+.|.|||+|.++. |+|+||++||+||
T Consensus 72 --~~~~W~~~k~~vm~~~l~~KF~Qn~~Lr~~Ll~Tg~~~LVE~s~~D~~WG~g~~~~~~~~~~~~~G~N~LG~~Lm~vR 149 (153)
T TIGR02464 72 --LEKQWDQVKYEVMRRALLAKFSTHADLREILLSTGGKKLVEASPNDKIWGIGLDAQDARIPRNWKGKNLLGKLLMEVR 149 (153)
T ss_pred --ChhhHHHHHHHHHHHHHHHHHHcCHHHHHHHHhcCCcEEEecCCCCCeeecCCCCCCcCCccCCCCccHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred HHHh
Q 039210 602 SEFL 605 (612)
Q Consensus 602 ~~l~ 605 (612)
++|+
T Consensus 150 ~~l~ 153 (153)
T TIGR02464 150 EELR 153 (153)
T ss_pred HHhC
Confidence 9986
No 8
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-42 Score=342.78 Aligned_cols=211 Identities=39% Similarity=0.631 Sum_probs=198.8
Q ss_pred cCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC
Q 039210 196 SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275 (612)
Q Consensus 196 ~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~ 275 (612)
++||||++|+|+||| |++++.+|.++|||++.++.++|++|+.+||||+|.+|+++|||.|++|+..+
T Consensus 1 ~~rP~v~lk~a~SlD------------Gkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~ 68 (218)
T COG1985 1 RGRPFVTLKLAMSLD------------GKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEG 68 (218)
T ss_pred CCCCEEEEEEEEccc------------CccccCCCCceeEeCHHHHHHHHHHHHHcCEEEECccEEEeeCCccccccCCC
Confidence 368999999999999 99999999999999999999999999999999999999999999999999886
Q ss_pred ---CCCeEEEEcCCCCCCCCCcccccCC-CCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHcCCCeE
Q 039210 276 ---HTPMRIVLTQTLNLPEEANLWDVSD-APTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSI 349 (612)
Q Consensus 276 ---~~P~~vVvd~~~~l~~~~~l~~~~~-~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~g~~~I 349 (612)
++|++||+|+++++|++.++|+... .|+||++++. +++.+.+++.|++++.++ ++|+..+|+.|+++++++|
T Consensus 69 ~~~~~P~rVIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~--~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i~~v 146 (218)
T COG1985 69 GEERNPVRVILDSRLRLPLDSRVFRTGEGAPTIVVTTEP--EEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSV 146 (218)
T ss_pred CccCCCEEEEECCCCcCCchhhhhccCCCCcEEEEecCc--hhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhCCCcEE
Confidence 8999999999999999999998644 5999999887 778889999999999995 7999999999999999999
Q ss_pred EEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEec
Q 039210 350 LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421 (612)
Q Consensus 350 lveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~ 421 (612)
|||||++|+++||++|||||+++|++|+++|+. +++++.+.++..+.++..|++.+++.+|+|+.+.++..
T Consensus 147 lvEGG~~L~~s~l~~glVDel~l~iaP~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g~d~~l~~~~~ 217 (218)
T COG1985 147 LVEGGATLNGSFLEAGLVDELLLYIAPKILGGS-ARTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEYRVN 217 (218)
T ss_pred EEccCHHHHHHHHHcCCCcEEEEEEechhhcCC-CCccccCccccchhhcccceEeeEEEECCeEEEEEEEC
Confidence 999999999999999999999999999999997 88899999998888889999999999999998887753
No 9
>PF08719 DUF1768: Domain of unknown function (DUF1768); InterPro: IPR012816 This entry describes a sequence region that occurs in at least three different polypeptide contexts. It is found fused to GTP cyclohydrolase II, the RibA of riboflavin biosynthesis (IPR000926 from INTERPRO), as in Vibrio vulnificus. It is found fused to riboflavin biosynthesis protein RibD (IPR004794 from INTERPRO) in rice and Arabidopsis. It occurs as a standalone protein in a number of bacterial species in varied contexts, including single gene operons and bacteriophage genomes. The member from Escherichia coli currently is named YbiA. The function(s) of members of this family is unknown.; PDB: 2B3W_A.
Probab=100.00 E-value=9.6e-43 Score=330.63 Aligned_cols=147 Identities=51% Similarity=0.877 Sum_probs=113.1
Q ss_pred EEEeccCCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccccCCC
Q 039210 451 IYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHP 530 (612)
Q Consensus 451 i~F~~~~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~~~~~ 530 (612)
|+||+++++|++|||||++||.++ |..|+|+||||||+||..++++ +++++|+.+.+|.+++++||.+.+++.
T Consensus 1 I~F~~~~~~~~~lSn~~~~~~~~~----g~~y~s~Ehy~qa~K~~~~~d~---~~~~~I~~~~~p~~~k~l~r~~~~~~~ 73 (157)
T PF08719_consen 1 IYFYRPDDPYGPLSNFYPCPFEID----GITYPSVEHYYQAQKFIDFNDR---EIAEKILAAKSPKEAKKLGRKVKNFDE 73 (157)
T ss_dssp EEE--TTSGGGTTSTTS---EEET----TEEESSHHHHHHHHHB--HHHH---H---HHHH---HHHHHHHH--SS--S-
T ss_pred CEeCCCCCCCCccccCCCCceEEC----CEEECcHHHHHHHHhcccccch---hHHHHHHHCCCHHHHHHHhccccccch
Confidence 899999999999999999999997 8999999999999999998654 568899999999999999999876654
Q ss_pred CcCccchHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCCCCCceeecCC----------CCCccHhhHHHHHH
Q 039210 531 DWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGRE----------GEGLNYLGRLLMQL 600 (612)
Q Consensus 531 ~~~~~~W~~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~~D~~WG~g~~----------~~G~N~LG~iLM~v 600 (612)
.+++|++++.++|++||++||+|||+||++||+||++.|||+|+.|.|||+|.+ +.|+|+||++||+|
T Consensus 74 --~~~dW~~~~~~vm~~~l~~Kf~qn~~lr~~Ll~Tg~~~LVe~s~~D~~WG~g~~~~~~~~~~~~~~G~N~LG~iLM~v 151 (157)
T PF08719_consen 74 --KRPDWDKVKYQVMREALRAKFSQNPELRELLLSTGDRELVEASPRDRFWGIGLDEDDPAEDPGNWRGRNLLGKILMEV 151 (157)
T ss_dssp --B-TTHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTTTEEEEE--SS--SSS-TTT----------T-S-THHHHHHHHH
T ss_pred --hhHhHHHHHHHHHHHHHHHHHhCCHHHHHHHHccCCeEEEecCCCCCeeecCCCcccccccccCCCCchHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHhc
Q 039210 601 RSEFLG 606 (612)
Q Consensus 601 R~~l~~ 606 (612)
|++|++
T Consensus 152 R~~l~~ 157 (157)
T PF08719_consen 152 REELRK 157 (157)
T ss_dssp HHHH--
T ss_pred HHHhcC
Confidence 999984
No 10
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=100.00 E-value=2.3e-39 Score=321.85 Aligned_cols=205 Identities=31% Similarity=0.516 Sum_probs=185.3
Q ss_pred cceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCC-CCC
Q 039210 199 PFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHT 277 (612)
Q Consensus 199 P~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~-~~~ 277 (612)
|||++|+|+||| |+||..+|++ |||+++++.++|++|+++||||+|++|++.|||.|++|.+. +++
T Consensus 1 P~V~lk~A~SlD------------Gkia~~~g~~-~it~~~~r~~~h~lRa~~DaIlvG~~Tv~~D~P~L~~r~~~~~~~ 67 (210)
T TIGR01508 1 PYVIVNVAMSLD------------GKLATINRDS-RISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVKKIKSDRN 67 (210)
T ss_pred CEEEEEEeecCc------------ccccCCCCCc-CcCCHHHHHHHHHHHHHCCEEEECcCeEEecCCcccccCcccCCC
Confidence 999999999999 9999999995 69999999999999999999999999999999999999763 579
Q ss_pred CeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEe--cCCCHHHHHHHHHHcCCCeEEEeecH
Q 039210 278 PMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DILNSRDVMEYFHDRGYLSILWECGG 355 (612)
Q Consensus 278 P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~--~~~dl~~~l~~L~~~g~~~IlveGG~ 355 (612)
|++||+|+++++|.+.++|+. ..|+||++++.+++++.++|++.|++++.+ ..+|+.++++.|+++|+++||||||+
T Consensus 68 P~rvVld~~~~~~~~~~~~~~-~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~ 146 (210)
T TIGR01508 68 PVRVVVDSKLRVPLNARILNK-DAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDKGVRRLMVEGGG 146 (210)
T ss_pred CEEEEECCCCCCCCcchhhcC-CCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEeeCH
Confidence 999999999999999999975 458999998877778888899999999876 35799999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEE
Q 039210 356 TLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418 (612)
Q Consensus 356 ~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~ 418 (612)
+|+++|+++|||||++++++|+++|+..++++|++.++..+ ...+|++.+++.+++|+++.+
T Consensus 147 ~l~~~fl~~~LvDel~l~i~P~ilG~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~ 208 (210)
T TIGR01508 147 TLIWSLFKENLVDEISVYIAPKIFGGRDAPTYVDGEGFKTE-DCPKLELKNFYRLGEGIVLEF 208 (210)
T ss_pred HHHHHHHHCCCCcEEEEEEcCEEEcCCCCcCccCCCCcCcc-cCccceEeeEEEECCcEEEEE
Confidence 99999999999999999999999997667777776555555 567999999999999987643
No 11
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=100.00 E-value=2.6e-39 Score=323.17 Aligned_cols=208 Identities=34% Similarity=0.483 Sum_probs=188.3
Q ss_pred ccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCccc-CCCCCC
Q 039210 198 VPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA-RHGGGH 276 (612)
Q Consensus 198 rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~-r~~~~~ 276 (612)
||||++|+|+||| |+||+.+|.+ ||++++++.++|++|+.+||||+|++|++.|||.|++ |...+.
T Consensus 2 rP~v~~k~a~SlD------------G~Ia~~~g~~-~it~~~~~~~~~~lR~~~DaiLvG~~T~~~d~p~l~~~R~~~~~ 68 (217)
T PRK05625 2 RPYVIVNAAMSAD------------GKLATKTRYS-RISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLTVHRYAAGK 68 (217)
T ss_pred CCEEEEeeEecCC------------CceeCCCCCC-CcCCHHHHHHHHHHHHHCCEEEEccceEEccCCcceeeeccCCC
Confidence 8999999999999 9999999999 9999999999999999999999999999999999999 876544
Q ss_pred --CCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHcCCCeEEEe
Q 039210 277 --TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSILWE 352 (612)
Q Consensus 277 --~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~g~~~Ilve 352 (612)
+|++||+|++++++++.++|+. ..|+||+++..++.++.+.|...|++++.+. .+|+.++++.|+++|+++||||
T Consensus 69 ~~~P~~vVld~~~~l~~~~~~~~~-~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~vlve 147 (217)
T PRK05625 69 PENPIRVVVDSSARTPPDARILDG-PAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRLMVE 147 (217)
T ss_pred CCCCEEEEECCCCCCCCcccccCC-CCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999898863 5789999987777788889999999988653 6899999999999999999999
Q ss_pred ecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 353 CGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 353 GG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
||++|+++||++|||||++++++|+++|+..++++|++.++..+....+|++.+++.++++++ ++|.
T Consensus 148 GG~~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-l~y~ 214 (217)
T PRK05625 148 GGGTLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCRCDEGVV-LTYK 214 (217)
T ss_pred cCHHHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEEECCEEE-EEEE
Confidence 999999999999999999999999999976678888765555556678999999999999986 5554
No 12
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=100.00 E-value=7.9e-39 Score=319.26 Aligned_cols=211 Identities=39% Similarity=0.639 Sum_probs=191.8
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCC--
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-- 274 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~-- 274 (612)
+||||++++|+||| |+||.++|.+.||++++++.++|++|+++||||+|++|++.|||.|++|++.
T Consensus 1 ~rP~v~~~~a~SlD------------G~ia~~~g~~~wi~~~~~~~~~~~lr~~~DailvG~~T~~~d~p~l~~r~~~~~ 68 (216)
T TIGR00227 1 GRPYVILKYAMSLD------------GKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELD 68 (216)
T ss_pred CCCEEEEEEEEcCC------------CCeeCCCCcccCcCCHHHHHHHHHHHhHcCEEEECcCeEeccCCcceeeccCcc
Confidence 58999999999999 9999999999999999999999999999999999999999999999999874
Q ss_pred -CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHcCCCeEEE
Q 039210 275 -GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSILW 351 (612)
Q Consensus 275 -~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~g~~~Ilv 351 (612)
+++|++||+|++++++...++|.. ..++||+++..++.++.+++.+.|++++.+. .+|+.++++.|+++|+++|+|
T Consensus 69 ~~~~P~~vv~~~~~~~~~~~~~~~~-~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~g~~~llv 147 (216)
T TIGR00227 69 ELRNPVRVVLDSQLRVPPTARLLND-DAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEEGINSVMV 147 (216)
T ss_pred cCCCCeEEEECCCCCCCcccccccC-CCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHcCCCEEEE
Confidence 478999999999999998888875 3689999887766777778888899988663 459999999999999999999
Q ss_pred eecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 352 ECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 352 eGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
|||++|+++|+++|||||++++++|+++|+..++++|++..+..+....+|++++++.+++|+++.+|+
T Consensus 148 eGG~~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~g~~v~~~~~~ 216 (216)
T TIGR00227 148 EGGGTLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVDGEGFQKMADAPNLELKEIYQIGEDIVLTAKL 216 (216)
T ss_pred eeCHHHHHHHHHCCCCCEEEEEECchhhCCCCCcCccCCCCccCHhhcccceeeeEEEECCeEEEEEeC
Confidence 999999999999999999999999999998667888887777777777899999999999999988763
No 13
>PRK14059 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=318.73 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=183.3
Q ss_pred cccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCC
Q 039210 194 ATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273 (612)
Q Consensus 194 ~~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~ 273 (612)
.+++||||++|+|+||| |+|+ .+|.+.|||++.++.++|++|+++||||+|++|++.|||.| +|..
T Consensus 26 ~~~~rP~V~lk~A~SlD------------Gkia-~~g~s~~It~~~~r~~~h~lRa~~DAIlVG~~Tv~~DnP~L-~r~~ 91 (251)
T PRK14059 26 DGLDRPWLRANFVTSLD------------GAAT-VDGRSGGLGGPADRRVFGLLRALADVVVVGAGTVRAENYGG-VRLS 91 (251)
T ss_pred ccCCCCeEEEEEEEcCc------------cccc-CCCCCcCcCCHHHHHHHHHHHHHCCEEEEchhhhhhcCccc-cccC
Confidence 46899999999999999 9998 99999999999999999999999999999999999999999 4432
Q ss_pred ---------C--CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhC--CcEEEEe--cCCCHHHHH
Q 039210 274 ---------G--GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASR--GVEVVEF--DILNSRDVM 338 (612)
Q Consensus 274 ---------~--~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~--gv~vi~~--~~~dl~~~l 338 (612)
. ..+|.+||+|+++++|+++++|+....++||+++..++.++...|... |++++.. ..+|+.+++
T Consensus 92 ~~~~~~R~~~g~~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l 171 (251)
T PRK14059 92 AAARQQRQARGQAEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAV 171 (251)
T ss_pred HHHHHHHHhcCCCCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHH
Confidence 1 257999999999999999999985567899999887777777776544 8888765 357999999
Q ss_pred HHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEE
Q 039210 339 EYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418 (612)
Q Consensus 339 ~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~ 418 (612)
++|+++|+++||||||++++++|+++|||||++++++|+++|++..+ +|.+.+ .....|++.+++.+++|+++++
T Consensus 172 ~~L~~~g~~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~-~f~~~~----~~~~~l~L~~~~~~~~g~v~l~ 246 (251)
T PRK14059 172 AALAARGLRRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARR-IVTGPG----QAPTRMRLAHVLTDDDGYLFLR 246 (251)
T ss_pred HHHHhCCCCEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcc-cCCCCC----CCCcCeEEEEEEEcCCCEEEEE
Confidence 99999999999999999999999999999999999999999986444 565422 3457899999999999999999
Q ss_pred Eec
Q 039210 419 FLQ 421 (612)
Q Consensus 419 y~~ 421 (612)
|..
T Consensus 247 Y~~ 249 (251)
T PRK14059 247 YVR 249 (251)
T ss_pred EEe
Confidence 974
No 14
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=100.00 E-value=9.6e-34 Score=279.28 Aligned_cols=191 Identities=33% Similarity=0.594 Sum_probs=173.1
Q ss_pred cceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC---
Q 039210 199 PFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG--- 275 (612)
Q Consensus 199 P~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~--- 275 (612)
|||+++|++||| |||+.++|...|++++.++.++|++|+++|++|+|++|++.++|.++.|..+.
T Consensus 1 P~v~~~~a~SlD------------G~ia~~~~~~~~~~~~~~~~~~~~l~~~~dail~G~~T~~~~~~~~~~~~~~~~~~ 68 (200)
T PF01872_consen 1 PKVILKMAMSLD------------GKIAGPDGDSGWLSGDEDREFLHELRSEADAILVGRNTVRADNPSLTVRWPGDPPP 68 (200)
T ss_dssp -EEEEEEEEETT------------SEESSTTSCGCTSSSHHHHHHHHHHHHHCSEEEEEHHHHHHHTHHTSSHSSTSSCH
T ss_pred CEEEEEEeeccC------------cCEECCCCCccCCCCHHHHHHHHHHHhhCCEEEeccchhhhcCccccccCccccch
Confidence 899999999999 99999999999999999999999999999999999999999999998887764
Q ss_pred ------CCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeE
Q 039210 276 ------HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSI 349 (612)
Q Consensus 276 ------~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~I 349 (612)
++|.+||+|++++++++..+++.. .+++|++++.+..++.+.+. | .+|+.+++++|+++|+++|
T Consensus 69 ~~~~~~~~p~~vV~s~~~~~~~~~~~~~~~-~~~~v~~s~~~~~~~~~~l~---v------~~dl~~~l~~L~~~g~~~i 138 (200)
T PF01872_consen 69 RERGRAKQPPKVVVSRSLKLPPDARLFNDD-KPVLVITSEKAPDEYLERLR---V------RVDLEEALRRLKERGGKDI 138 (200)
T ss_dssp HCTTCHSSSEEEEEESTCCTTTTCCCCSSS-SSEEEEEESTSSHHHHHHHH---E------SEHHHHHHHHHHHTTTSEE
T ss_pred hhhhhccCCeEEEEecccccccccccccCC-CceEEEeecccccccccceE---E------ecCHHHHHHHHHhcCCCEE
Confidence 799999999999999998888876 89999999998888888887 2 7799999999999999999
Q ss_pred EEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEE
Q 039210 350 LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLI 416 (612)
Q Consensus 350 lveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~ 416 (612)
+||||++++++||++|||||++|+|+|+++|+ +++++|++..+.. .+|++++++.+++|+++
T Consensus 139 ~v~GG~~l~~~~l~~gLvDEl~l~i~Pv~lG~-~~~~lf~~~~~~~----~~l~l~~~~~~~~~vv~ 200 (200)
T PF01872_consen 139 LVEGGGSLNGSFLRAGLVDELSLTIAPVLLGG-GGPPLFDGGSPRS----LRLELVSVRTFGNGVVL 200 (200)
T ss_dssp EEEEHHHHHHHHHHTT--SEEEEEEESEE-SS-TSEESSTSSTSSS----EEEEEEEEEEETTEEEE
T ss_pred EEechHHHHHHHHhCCCCCEEEEEEeeEEeCC-CCCCCCCCCCCcc----cceEEEEEEEeCCcEEC
Confidence 99999999999999999999999999999999 7888888754322 68999999999999985
No 15
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.97 E-value=1.7e-30 Score=233.34 Aligned_cols=113 Identities=43% Similarity=0.817 Sum_probs=106.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccC-CCCCcEEEEcCCCCCCCCch-hH
Q 039210 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS-FCRGATAYLNMEPGDCHGDH-TA 126 (612)
Q Consensus 49 M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~-~~~g~tlYvTlEPC~~~g~~-~C 126 (612)
|++|+++|+++.....+++|||||||++||+||++|||+..++.|||++||++|+. .++|||||||+|||+++|++ ||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~~l~g~tly~TlEPC~~~~~~~mC 80 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLARGATLYVTLEPCSHHGKTPPC 80 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCchHH
Confidence 78999999999666678999999999777999999999999999999999999987 79999999999999999997 59
Q ss_pred HHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCC
Q 039210 127 VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG 161 (612)
Q Consensus 127 ~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~g 161 (612)
+++|+|+||+|||||..||++.+.++|+++|+++|
T Consensus 81 ~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 81 VDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 99999999999999999999988889999999986
No 16
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=3.5e-30 Score=246.84 Aligned_cols=135 Identities=23% Similarity=0.384 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCC----CChHHHHHHHHccC-----CCCCcEEEEc
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQG----TKPAEVQAVEAGGS-----FCRGATAYLN 114 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~----~~HAE~~Ai~~a~~-----~~~g~tlYvT 114 (612)
+|++||++|+++|+++... +++||||||| ++|+||++|||+..+ +.|||++||++|+. .+.|||||||
T Consensus 12 ~~~~~m~~A~~~A~~a~~~--g~~pvGAVIV-~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 12 SHEYWMRHALTLAKRAWDE--REVPVGAVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred cHHHHHHHHHHHHHHhhcc--CCCCEEEEEE-eCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 4788999999999999764 5789999999 689999999998643 58999999999954 4689999999
Q ss_pred CCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCC----cEEEEcccchhhHHHHHHHHhhhhccccc
Q 039210 115 MEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG----LQVHVLGEDLQSKIIEEARKSCLLVNAPL 190 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~g----i~V~~~~~~~~~~~l~~~~~e~~~l~~~f 190 (612)
+|||. ||++||+|+||+|||||..||+....|+++++|+..+ |+|..+ +++ +||.+|++.|
T Consensus 89 lEPC~-----MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~g-------v~~---~e~~~ll~~f 153 (172)
T PRK10860 89 LEPCV-----MCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEG-------VLA---DECAALLSDF 153 (172)
T ss_pred CCCcH-----HHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeC-------ccH---HHHHHHHHHH
Confidence 99993 6999999999999999999999888888899999877 566554 455 9999999999
Q ss_pred cccccc
Q 039210 191 IHRATS 196 (612)
Q Consensus 191 ~~~~~~ 196 (612)
|.+.+.
T Consensus 154 f~~~~~ 159 (172)
T PRK10860 154 FRMRRQ 159 (172)
T ss_pred HHHHhh
Confidence 987543
No 17
>PHA02573 30.3 hypothetical protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=219.05 Aligned_cols=128 Identities=24% Similarity=0.289 Sum_probs=106.7
Q ss_pred CCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccccCCCCcCccc
Q 039210 457 WDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSD 536 (612)
Q Consensus 457 ~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~~~~~~~~~~~ 536 (612)
..||++|||||++||.++ |+.|||+||||||+||. |+ +++++|+.+ +|.+||++||++.+|++ .+.+
T Consensus 9 ~~~yg~fSnf~~~pF~~d----G~~~~taEhy~qA~KF~---D~---e~~~~I~~a-sP~eAK~LGR~v~~f~~--~~~~ 75 (148)
T PHA02573 9 PYPSCALSNFAPHPFVMD----GIQCGSMEGFLQSLKFK---NP---EMQRHIFGL-SGKAAKFKGRKKKWAQD--QTLY 75 (148)
T ss_pred CCcCccccCCCCCCEEEC----CEEECCHHHHHHHHccC---CH---HHHHHHHhC-CHHHHHHHhCcccCCcc--cccc
Confidence 468999999999999998 99999999999999976 43 567899998 89999999999998866 4446
Q ss_pred hHHH-------H-HHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCC----CCCceeecCCCCCccHhhHHHHHHHHHH
Q 039210 537 WESV-------K-IDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASP----HDLFWGGGREGEGLNYLGRLLMQLRSEF 604 (612)
Q Consensus 537 W~~~-------~-~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~----~D~~WG~g~~~~G~N~LG~iLM~vR~~l 604 (612)
|+.+ . ..+|.+|+++||.|||+||+.||+||++.|||... .+++. -.-..-.+||.+|+.|
T Consensus 76 W~~~~~~r~~~~~~~im~~a~~aKF~Qn~~Lr~~LL~TGd~~LVE~~g~~~~~~t~~-------~~~ef~~~l~~~r~~~ 148 (148)
T PHA02573 76 WKGVPIHRYSEAYQELIENAYFEMAIQNKGFRKALLATKNKVLTHSIGKLKKNETIL-------TEQEFCSNLNRLRDLL 148 (148)
T ss_pred hhccchhhhHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCcEEEecCCCCCCCcccc-------cHHHHHHHHHHHHhcC
Confidence 6665 2 38899999999999999999999999999999852 22222 2236678999999864
No 18
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.95 E-value=6.6e-27 Score=219.63 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC-------------------CCChHHHHHHHH
Q 039210 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ-------------------GTKPAEVQAVEA 101 (612)
Q Consensus 41 ~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~-------------------~~~HAE~~Ai~~ 101 (612)
+++||++||++|+.+|+++ .++++||||||| +||+||++|||+.. .+.|||++||.+
T Consensus 2 ~~~~d~~fM~~A~~~A~rs---~~~~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~ 77 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRS---TCTRLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQ 77 (151)
T ss_pred CCcHHHHHHHHHHHHHHhc---CCCCCCEEEEEE-ECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHH
Confidence 3468999999999999988 367899999999 89999999999863 247999999999
Q ss_pred c---cCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEc
Q 039210 102 G---GSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167 (612)
Q Consensus 102 a---~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~ 167 (612)
| +..+.|+|||||+|||. +|+++|+++||++|||+..+++. ..|.++|+++||+|+..
T Consensus 78 a~~~~~~l~g~tlYvT~ePC~-----~Ca~ai~~agI~~Vvy~~~~~~~---~~~~~~l~~~gi~v~~~ 138 (151)
T TIGR02571 78 CAKFGVSTEGAEIYVTHFPCL-----QCTKSIIQAGIKKIYYAQDYHNH---PYAIELFEQAGVELKKV 138 (151)
T ss_pred HHhcCCCcCCcEEEEeCCCcH-----HHHHHHHHhCCCEEEEccCCCCc---HHHHHHHHHCCCEEEEe
Confidence 8 35688999999999993 59999999999999999765553 24789999999999875
No 19
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.1e-27 Score=223.74 Aligned_cols=136 Identities=24% Similarity=0.379 Sum_probs=116.0
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHccC-----CCCCcE
Q 039210 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAGGS-----FCRGAT 110 (612)
Q Consensus 40 ~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~~-----~~~g~t 110 (612)
+...+|..||+.|+.+|+++.. .++.|||||||+.+|+||+.|+|.. .++.|||++||++|++ .+++||
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~--~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~t 80 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGD--EGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCT 80 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHh--cCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcE
Confidence 3456789999999999999973 3579999999966999999999975 5789999999999943 578999
Q ss_pred EEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCC----cEEEEcccchhhHHHHHHHHhhhhc
Q 039210 111 AYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQG----LQVHVLGEDLQSKIIEEARKSCLLV 186 (612)
Q Consensus 111 lYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~g----i~V~~~~~~~~~~~l~~~~~e~~~l 186 (612)
||||+||| .||++||+|+||+|||||..||+....|....++.+.+ ++|.. |+++ +||..+
T Consensus 81 lyvT~EPC-----~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~-------g~~~---~e~~~~ 145 (152)
T COG0590 81 LYVTLEPC-----PMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYG-------GILE---EECSAL 145 (152)
T ss_pred EEEecCCH-----HHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEec-------chhh---HHHHHH
Confidence 99999999 36999999999999999999999887788888888843 44544 4566 999999
Q ss_pred cccccc
Q 039210 187 NAPLIH 192 (612)
Q Consensus 187 ~~~f~~ 192 (612)
++.||.
T Consensus 146 l~~f~~ 151 (152)
T COG0590 146 LSEFFR 151 (152)
T ss_pred HHHHHh
Confidence 999985
No 20
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.94 E-value=1.4e-26 Score=221.29 Aligned_cols=112 Identities=23% Similarity=0.310 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC-----------------------------------
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----------------------------------- 89 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----------------------------------- 89 (612)
|++||++|+.+|+++. +++.||||||| ++|+||++|||+.+
T Consensus 3 d~~fM~~A~~~A~~s~---~~~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PHA02588 3 DSTYLQIAYLVSQESK---CVSWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSS 78 (168)
T ss_pred HHHHHHHHHHHHHhcC---CCCCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccC
Confidence 7889999999999985 35789999999 89999999999753
Q ss_pred -CCChHHHHHHHHcc---CCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEE
Q 039210 90 -GTKPAEVQAVEAGG---SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH 165 (612)
Q Consensus 90 -~~~HAE~~Ai~~a~---~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~ 165 (612)
.+.|||++||.+|. ..+.|||||||+||| .+|+.+|+++||+||||+...+. ..+.|+++|+++||+|+
T Consensus 79 ~~~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC-----~~Ca~aI~~~gI~rVvy~~~~~~--~~~~~~~~L~~~Gi~v~ 151 (168)
T PHA02588 79 KNEIHAELNAILFAARNGISIEGATMYVTASPC-----PDCAKAIAQSGIKKLVYCEKYDR--NGPGWDDILRKSGIEVI 151 (168)
T ss_pred CCCccHHHHHHHHHhhcCCCCCCcEEEEeCCCc-----HHHHHHHHHhCCCEEEEeeccCC--CcHHHHHHHHHCCCEEE
Confidence 36799999999984 468999999999999 35999999999999999986322 23457999999999998
Q ss_pred Ec
Q 039210 166 VL 167 (612)
Q Consensus 166 ~~ 167 (612)
..
T Consensus 152 ~~ 153 (168)
T PHA02588 152 QI 153 (168)
T ss_pred Ee
Confidence 64
No 21
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.90 E-value=1.1e-23 Score=193.96 Aligned_cols=93 Identities=26% Similarity=0.312 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC-------------------------CCChHHHHHH
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ-------------------------GTKPAEVQAV 99 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~-------------------------~~~HAE~~Ai 99 (612)
|++||++|+++|+++. ++++||||||| ++|+||++|||+.. ++.|||++||
T Consensus 1 d~~~m~~A~~~A~~s~---~~~~~VGAViv-~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai 76 (131)
T cd01286 1 DEYFMAIARLAALRST---CPRRQVGAVIV-KDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAI 76 (131)
T ss_pred CHHHHHHHHHHHHHcC---CCCCCEEEEEE-ECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHH
Confidence 4679999999999874 57899999999 68999999999764 6799999999
Q ss_pred HHccC---CCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCC
Q 039210 100 EAGGS---FCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPL 146 (612)
Q Consensus 100 ~~a~~---~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~ 146 (612)
.+|+. .++++|||||+|||. +|+.+|+++||++|||+...+.
T Consensus 77 ~~a~~~~~~~~~~tLyvT~ePC~-----~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 77 LQAARHGVSLEGATLYVTLFPCI-----ECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred HHHhHcCCCcCCeEEEEecCcHH-----HHHHHHHHhCCCEEEEeeccCc
Confidence 99854 789999999999992 5999999999999999997665
No 22
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.89 E-value=7.4e-23 Score=191.05 Aligned_cols=116 Identities=27% Similarity=0.346 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC--------------------------CCChHHH
Q 039210 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ--------------------------GTKPAEV 96 (612)
Q Consensus 43 ~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~--------------------------~~~HAE~ 96 (612)
.||++||+.|.-.|.++ ++|+..|||||| +|++||++|||+.+ .+.|||+
T Consensus 7 ~wdeyfm~~A~l~a~Rs---tc~r~~VGAvIv-kd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~ 82 (164)
T COG2131 7 MWDEYFMAIAELVALRS---TCPRRQVGAVIV-KDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQ 82 (164)
T ss_pred HHHHHHHHHHHHHHHHc---cCcccceeEEEE-eCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHH
Confidence 48999999999999887 578999999999 79999999999642 1249999
Q ss_pred HHHHHcc---CCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEc
Q 039210 97 QAVEAGG---SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167 (612)
Q Consensus 97 ~Ai~~a~---~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~ 167 (612)
|||.+|. ..+.|+|||||+.||. +|+..|+++||++|||+...++....-.+..+|+++||+++..
T Consensus 83 NAil~aa~~g~~~~~atlYvt~~PC~-----~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~~ 151 (164)
T COG2131 83 NAILQAARHGVGLEGATLYVTHFPCS-----NCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQF 151 (164)
T ss_pred HHHHHHHhcCCCCCCcEEEEEecccH-----HHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEEec
Confidence 9999994 4567799999999993 6999999999999999998887654445689999999999763
No 23
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.88 E-value=7.1e-23 Score=182.89 Aligned_cols=92 Identities=32% Similarity=0.446 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHccC-----CCCCcEEEEcCCCCC
Q 039210 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAGGS-----FCRGATAYLNMEPGD 119 (612)
Q Consensus 49 M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a~~-----~~~g~tlYvTlEPC~ 119 (612)
|++|+++|+++.. .+++|||||||+++|+||++|+|... ++.|||++||++|.. .+.|+|||+|+|||
T Consensus 1 m~~al~~a~~~~~--~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC- 77 (109)
T cd01285 1 MRLAIELARKALA--EGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPC- 77 (109)
T ss_pred CHHHHHHHHHHHH--cCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCCh-
Confidence 7899999999854 46899999999888999999999874 789999999999954 47999999999999
Q ss_pred CCCchhHHHHHHHhCCCEEEEEeeCCCc
Q 039210 120 CHGDHTAVSALVQAGITRVVVGIRNPLQ 147 (612)
Q Consensus 120 ~~g~~~C~~ai~~agI~rVv~~~~dp~~ 147 (612)
.||+++|+++||+||||+..+|+.
T Consensus 78 ----~mC~~ai~~~gi~~Vvy~~~~~~~ 101 (109)
T cd01285 78 ----PMCAGALLWARIKRVVYGASDPKL 101 (109)
T ss_pred ----HHHHHHHHHHCCCEEEEEecCCcc
Confidence 369999999999999999998874
No 24
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.85 E-value=1.8e-21 Score=171.25 Aligned_cols=93 Identities=31% Similarity=0.474 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHccC----CCCCcEEEEc
Q 039210 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAGGS----FCRGATAYLN 114 (612)
Q Consensus 43 ~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a~~----~~~g~tlYvT 114 (612)
.+|++||++|+++|+++. ..++++||||||+++|++|+.|+|... +..|||++||.++.. .+.|+|||||
T Consensus 2 ~~~~~~m~~a~~~a~~s~--~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~lyvt 79 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSR--PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARNGGSSLKGCTLYVT 79 (102)
T ss_dssp CHHHHHHHHHHHHHHTHB--TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHTTSSGETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcc--ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhhccccccCcccccC
Confidence 368999999999999996 457899999999779999999999753 467999999999843 3689999999
Q ss_pred CCCCCCCCchhHHHHHHHhCCCEEEEEe
Q 039210 115 MEPGDCHGDHTAVSALVQAGITRVVVGI 142 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~agI~rVv~~~ 142 (612)
+|||. +|+.+|+++||+||||+.
T Consensus 80 ~ePC~-----~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 80 LEPCG-----MCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp E--BH-----HHHHHHHHHTSSEEEEEE
T ss_pred CCCHH-----HHHHHHHHHCcCeEEEeC
Confidence 99992 599999999999999984
No 25
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.84 E-value=4.2e-21 Score=167.54 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEec-CCeEEEEeeCCCC----CCChHHHHHHHHccCC--CCCcEEEEcCCCCCCC
Q 039210 49 IRRAADIADKSAGFTSPHPNFGCLIATS-TGKVAGEGYLYAQ----GTKPAEVQAVEAGGSF--CRGATAYLNMEPGDCH 121 (612)
Q Consensus 49 M~~A~~lA~~~~~~~~~~~~vGaViv~~-~g~ii~~G~n~~~----~~~HAE~~Ai~~a~~~--~~g~tlYvTlEPC~~~ 121 (612)
|+.|+++|+++. ...+++|||||||++ +|+|+++|+|... ++.|||++||++|... ++++|||||+|||.
T Consensus 1 m~~a~~~a~~a~-~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~~tly~tlePC~-- 77 (96)
T cd00786 1 MTEALKAADLGY-AKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGDTKGQMLYVALSPCG-- 77 (96)
T ss_pred CHHHHHHHHhcc-CCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCCCCceEEEEECCChH--
Confidence 789999999985 346789999999965 6999999999865 7899999999999543 69999999999993
Q ss_pred CchhHHHHHHHhCCCEEEEEe
Q 039210 122 GDHTAVSALVQAGITRVVVGI 142 (612)
Q Consensus 122 g~~~C~~ai~~agI~rVv~~~ 142 (612)
+|+++|+|+||++|||+.
T Consensus 78 ---mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 78 ---ACAQLIIELGIKDVIVVL 95 (96)
T ss_pred ---HHHHHHHHhCCCCEEEee
Confidence 599999999999999986
No 26
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.82 E-value=4.1e-20 Score=175.87 Aligned_cols=144 Identities=25% Similarity=0.243 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCC----CCCCChHHHHHHHH---c-c----CCCCCc
Q 039210 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY----AQGTKPAEVQAVEA---G-G----SFCRGA 109 (612)
Q Consensus 42 ~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~----~~~~~HAE~~Ai~~---a-~----~~~~g~ 109 (612)
..+|..||+.|+++|.++..... ++|||||+|+.||+|+++|+|. ..++.|||+.||+. + + ..++++
T Consensus 8 ~~~~~~~m~~a~eea~ka~d~~~-~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~~ 86 (169)
T KOG1018|consen 8 SDHDIAFMVEAVEEAKKALDEGD-EVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSET 86 (169)
T ss_pred ccccHHHHHHHHHHHHhhccCCC-CCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceeccCC
Confidence 44688999999999999987532 8999999995599999999997 46889999999998 3 2 457999
Q ss_pred EEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHH----HHHHHhCCcEEEEcccchhhHHHHHHHHhhhh
Q 039210 110 TAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA----VRALRSQGLQVHVLGEDLQSKIIEEARKSCLL 185 (612)
Q Consensus 110 tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g----~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~ 185 (612)
|||||+|||. ||++||.++||++||||...+.....+.. ...|+..+..+.... ++.. +++..
T Consensus 87 tlyvt~ePc~-----mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~i~~---~~~~~ 153 (169)
T KOG1018|consen 87 TLYVTCEPCP-----MCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRD-----GIEK---KEAQK 153 (169)
T ss_pred EEEEEecccH-----HHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEecc-----chhh---HHhhh
Confidence 9999999993 59999999999999999987766433322 233445566665532 3344 56666
Q ss_pred cccccccccccCcc
Q 039210 186 VNAPLIHRATSRVP 199 (612)
Q Consensus 186 l~~~f~~~~~~~rP 199 (612)
+...|+-+.++..|
T Consensus 154 ~~~~f~~~~n~~~~ 167 (169)
T KOG1018|consen 154 LLIAFYVRDNPKDP 167 (169)
T ss_pred HHHhhccccccCCC
Confidence 77777766554433
No 27
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=173.89 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCC------------------------CChHH
Q 039210 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQG------------------------TKPAE 95 (612)
Q Consensus 40 ~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~------------------------~~HAE 95 (612)
....||.+||..|.-.|.++. +||..|||+||++++.|||.|||..+. ..|||
T Consensus 62 ~~lswd~yFM~iA~LsA~RSk---DpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE 138 (230)
T KOG3127|consen 62 GYLSWDDYFMAIAFLSAKRSK---DPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAE 138 (230)
T ss_pred cCccHHHHHHHHHHHHHHhcc---CcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehH
Confidence 456789999999999999885 689999999998999999999996431 25999
Q ss_pred HHHHHHcc-CCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCc-hhhhHHHHHHHhCCcEEEEcc
Q 039210 96 VQAVEAGG-SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQ-HLRGQAVRALRSQGLQVHVLG 168 (612)
Q Consensus 96 ~~Ai~~a~-~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~-~~~g~g~~~l~~~gi~V~~~~ 168 (612)
.|||.+++ +...+|++|||+-||+ -|+..|+++||++|+|+..+.-+ ...-.+..+|..+|+++..-+
T Consensus 139 ~NAi~~~~~~~~~~~~lYvtl~PC~-----~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i 208 (230)
T KOG3127|consen 139 ENAILNKGRERVGGCSLYVTLCPCN-----ECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFI 208 (230)
T ss_pred HHHHHHhCccccCCceEEEeecchH-----HHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEec
Confidence 99999984 5678899999999996 49999999999999999976422 234456889999999987643
No 28
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.59 E-value=2.9e-14 Score=135.72 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=105.0
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCC-CcccCCCCCCCCe
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNP-RLTARHGGGHTPM 279 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p-~L~~r~~~~~~P~ 279 (612)
+++.+|+|+| |+|+.++| ..|.. .++..++.++ ...|++|+||+||+...+ .++ .-.
T Consensus 1 i~~~~a~sld------------G~i~~~~~-~~W~~-~~d~~~f~~~-~~~~~ivmGR~Tye~~~~~~~~-------~~~ 58 (158)
T cd00209 1 ISLIVAVDEN------------GVIGKDNK-LPWHL-PEDLKHFKKT-TTGNPVIMGRKTFESIPRRPLP-------GRT 58 (158)
T ss_pred CEEEEEECCC------------CceeCCCC-cCcCC-HHHHHHHHHH-HCCCeEEEChhhHhhCCCcCCC-------CCC
Confidence 4688999999 99999887 68953 3444444433 356999999999986432 111 123
Q ss_pred EEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 280 ~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
.+|+|++...+.. .++.++ . |+.+++++|+ .+.++|+|.||+.++.
T Consensus 59 ~~V~S~~~~~~~~-----------------------------~~~~~~---~-~~~~~v~~lk-~~~~~I~v~GG~~l~~ 104 (158)
T cd00209 59 NIVLSRQLDYQDA-----------------------------EGVEVV---H-SLEEALELAE-NTVEEIFVIGGAEIYK 104 (158)
T ss_pred EEEEccCCCcCCC-----------------------------CCeEEE---C-CHHHHHHHHh-cCCCeEEEECcHHHHH
Confidence 6788776543210 011111 1 6889999999 7788999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeee-EEEeCCC
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC-YEQVGPD 413 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~-~~~~g~d 413 (612)
+|+++ |||+++++.|+++ + +.++|.. .. ...|++++ ++.++++
T Consensus 105 ~~l~~--iDe~~l~v~pv~~-~--G~~~f~~-----~~-~~~l~l~~~~~~~~~~ 148 (158)
T cd00209 105 QALPY--ADRLYLTRIHAEF-E--GDTFFPE-----ID-ESEWELVSEEEVFEED 148 (158)
T ss_pred HHHhh--CCEEEEEEECCcc-c--CCEECCC-----CC-chhcEEEEEEeecccC
Confidence 99999 9999999999999 4 3445543 22 56899999 8888874
No 29
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=99.54 E-value=2.2e-13 Score=130.87 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=112.4
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |.|+. +|+..|. .+++.+++.+...... |||||+|++.-. ..+..-+.+..
T Consensus 2 i~~i~A~s~d------------G~Ig~-~~~lpW~-~~~~~~~Fk~~t~~~~-viMGRkT~esl~----~~~~pl~~r~~ 62 (167)
T COG0262 2 IILIVAVSLD------------GVIGR-DNSLPWH-LPEDLAHFKATTLGKP-VIMGRKTYESLP----GEWRPLPGRKN 62 (167)
T ss_pred EEEEEEEcCC------------Ceeec-CCCCCCC-ChhHHHHHHHhhCCCC-EEEccchhhhcc----ccCCCCCCCeE
Confidence 6788999999 99987 8889997 5556666666554444 999999997432 11112234456
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
+|++++.....+. . +.++ -++.+++..++....++|+|.||+.|.++
T Consensus 63 iV~sr~~~~~~e~--------~-~~v~------------------------~s~~~al~~~~~~~~~~i~IiGG~~l~~~ 109 (167)
T COG0262 63 IVLSRNPDLKTEG--------G-VEVV------------------------DSIEEALLLLLKEEGEDIFIIGGGELYRQ 109 (167)
T ss_pred EEEecCcccccCC--------C-EEEe------------------------CCHHHHHHHHhhcCCCeEEEEcCHHHHHH
Confidence 7888773221110 0 1111 16788888888777899999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEE-EeCCCeEEEEEe
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE-QVGPDMLISGFL 420 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~-~~g~dvv~~~y~ 420 (612)
||.+||+||+++++.|+.+|. +.++|.. .....|+++..+ ....+....+|.
T Consensus 110 ~l~~~l~Del~lt~ip~~lg~--Gd~~Fp~------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (167)
T COG0262 110 FLPAGLADELILTIIPVLLGE--GDTLFPE------GDPADWELVSSEDADEKGGYFYTFE 162 (167)
T ss_pred HhccccccEEEEEEeeeeccC--CCccCCC------CCccceEEeeeeecccCCceeEEEE
Confidence 999999999999999999986 3445543 345678888777 455555555554
No 30
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=99.51 E-value=9.8e-14 Score=126.18 Aligned_cols=126 Identities=27% Similarity=0.385 Sum_probs=98.7
Q ss_pred CCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccccCCCCcCccch
Q 039210 458 DPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDW 537 (612)
Q Consensus 458 ~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~~~~~~~~~~~W 537 (612)
.|-+.||||+++||++| |+.|.|+|.|.|..||.+.. .+++| ...++.+||..|++..+... +.-.|
T Consensus 9 ~p~~aLSNfa~~~Fv~D----G~~~~s~EGFLQ~lKf~~~~------~q~~i-~~m~G~~AK~~G~~~~~~~~--qtlYw 75 (146)
T PF08010_consen 9 WPSCALSNFAPHPFVFD----GVQFGSIEGFLQGLKFKNPE------MQRRI-FKMSGKEAKFRGKKKNWARD--QTLYW 75 (146)
T ss_pred CchHhhhcCCCCCeeec----CeeeehHHHHHHhccCCCHH------HHHHH-HHHhhHHHHHcccccchhhh--cceeE
Confidence 46688999999999998 99999999999999998742 23445 45589999999954333222 23455
Q ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcC----CCCCceeecCCCCCccHhhHHHHHHHHHH
Q 039210 538 E--------SVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEAS----PHDLFWGGGREGEGLNYLGRLLMQLRSEF 604 (612)
Q Consensus 538 ~--------~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s----~~D~~WG~g~~~~G~N~LG~iLM~vR~~l 604 (612)
. ....+++.+|+.+.| ||+.|+++|++|+++.|+|.- +.|++|-. -..-.+|+++|++|
T Consensus 76 ~G~p~~R~S~~y~~Li~~Ay~~~~-QN~~F~~aL~aT~~~~L~HsiG~~~p~~TiLT~-------~EF~~~L~~lR~~L 146 (146)
T PF08010_consen 76 KGEPIHRHSEAYQNLIDRAYRAMF-QNEGFRRALLATKNSVLTHSIGKHDPFDTILTE-------QEFCSILNRLRELL 146 (146)
T ss_pred CCCccccCCHHHHHHHHHHHHHHH-hCHHHHHHHHHcCCCeEEeecCCCCcCcccccH-------HHHHHHHHHHHhhC
Confidence 4 456789999999999 999999999999999999964 44555543 25668899999875
No 31
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.34 E-value=5.5e-12 Score=113.13 Aligned_cols=90 Identities=19% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHcc---CCCCCcEEEEc-----CCC
Q 039210 50 RRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAGG---SFCRGATAYLN-----MEP 117 (612)
Q Consensus 50 ~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a~---~~~~g~tlYvT-----lEP 117 (612)
..|++.++++.. ...+.||||+||+++|+|+ +|+|... .+.|||+.||.++. .....+++||| +||
T Consensus 2 ~~a~~~~~~a~~-~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 2 EAALAAAEFAYA-PYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred HHHHHHHHhCcC-CCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCCCceEEEEEEECCCCccCC
Confidence 356677777633 2457899999998789998 8999654 68999999999983 33568999999 999
Q ss_pred CCCCCchhHHHHHHHhCCCEEEEEeeCCC
Q 039210 118 GDCHGDHTAVSALVQAGITRVVVGIRNPL 146 (612)
Q Consensus 118 C~~~g~~~C~~ai~~agI~rVv~~~~dp~ 146 (612)
|. +|.++|.+.++++|+|...+++
T Consensus 80 C~-----~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 80 CG-----ACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred CH-----HHHHHHHHhCCCCeEEEEEcCC
Confidence 93 5999999999999999998765
No 32
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=98.96 E-value=1.1e-08 Score=113.80 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=104.9
Q ss_pred cceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------------cCeEEeccceEeccCC
Q 039210 199 PFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------------SDAVVVGGNTVRRDNP 266 (612)
Q Consensus 199 P~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------------~DailvG~~T~~~d~p 266 (612)
+-+.+-+|++.+ |-|. .+|..-| .-+++.+++.++-.. .++|||||+|++.-..
T Consensus 8 ~~i~lIvA~~~n------------~~IG-~~g~LPW-~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~ 73 (514)
T PTZ00164 8 KDFSIVVAVTLK------------RGIG-IGNSLPW-HIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPK 73 (514)
T ss_pred CCEEEEEEECCC------------CCee-CCCCCCc-CCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhh
Confidence 345678899999 8775 5778889 678888888877552 7899999999975310
Q ss_pred CcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc-C
Q 039210 267 RLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-G 345 (612)
Q Consensus 267 ~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-g 345 (612)
. .|.. ..-..||++++..... ..+.+++. -++.++++.|++. +
T Consensus 74 ~--~rPL--p~R~nIVLSr~~~~~~--------~~~~v~v~------------------------~sl~eal~~lk~~~~ 117 (514)
T PTZ00164 74 K--FRPL--KNRINVVLSRTLTEEE--------ADPGVLVF------------------------GSLEDALRLLAEDLS 117 (514)
T ss_pred h--cccc--CCCeEEEEcCCCCccc--------CCCCEEEe------------------------CCHHHHHHHHhccCC
Confidence 0 0100 1123477777643210 00111111 1688999999874 6
Q ss_pred CCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeee-EEEeCCCe
Q 039210 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC-YEQVGPDM 414 (612)
Q Consensus 346 ~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~-~~~~g~dv 414 (612)
.++|+|.||+++..+||+++||||++|++. ..+|. +.++|.. ++.. .|++++ ++.++++.
T Consensus 118 ~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI-~~~ge--GD~~FP~-----~~~~-~~~l~~~s~~~~~~~ 178 (514)
T PTZ00164 118 IEKIFIIGGASVYREALSANLLDKIYLTRV-NSEYE--CDVFFPK-----IPES-FFIVAIVSQTFSTNG 178 (514)
T ss_pred CCcEEEEchHHHHHHHhcCCCCCEEEEEEE-Eeccc--cCccCCC-----CCch-hcEEEEEEEeccCCC
Confidence 789999999999999999999999999999 55665 3445543 2222 356655 55666553
No 33
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=98.94 E-value=7.5e-09 Score=115.10 Aligned_cols=154 Identities=11% Similarity=0.106 Sum_probs=102.6
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
+.+-+|++.+ |-|. .+|..-|- -+++..++.+... .++|||||+||+.-...|. .-..
T Consensus 2 i~lI~A~~~n------------~~IG-~~~~LPW~-~peDl~~Fk~~T~-~~tVVMGRkTyEsi~~~Lp-------~R~n 59 (505)
T PRK00478 2 IKLIWCEDLN------------FGIA-KNNQIPWK-IDEELNHFHQTTT-NHTIVMGYNTFQAMNKILA-------NQAN 59 (505)
T ss_pred EEEEEEECCC------------Cccc-CCCCCCCC-CHHHHHHHHHHhC-CCeEEEehHHHHhhhhcCC-------CCeE
Confidence 4567788888 7775 68888884 6677766655533 4899999999974321111 1235
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
+|+|++...... . + .++.++ . |+.++++. ....+|||.||+++..+
T Consensus 60 iVlSr~~~~~~~----~--~---------------------~~v~v~--~--sl~~~L~~---~~~~dI~IIGG~~Ly~~ 105 (505)
T PRK00478 60 IVISKKHQRELK----N--N---------------------NELFVF--N--DLKKLLID---FSNVDLFIIGGKKTIEQ 105 (505)
T ss_pred EEECCCCccccC----C--C---------------------CCeEEE--C--CHHHHHHh---CCCCCEEEEChHHHHHH
Confidence 777766422100 0 0 111111 1 56666543 33368999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEecCC
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPI 423 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~~~ 423 (612)
|+. ++||+++++.|+.+|++ .+ | ..+ ...|++++.+.+++ ++.++|.+..
T Consensus 106 ~l~--~vDel~lT~Ip~~~g~d-~~--f------~~~-~~~~~Lv~~~~~~~-~v~~~Y~rk~ 155 (505)
T PRK00478 106 FIK--YADQLIISKLNADYKCD-LF--V------NLN-YDDFSLVQTKEYDQ-FVVEYWEKKP 155 (505)
T ss_pred HHH--hCCEEEEEEeccccCCC-CC--C------CCC-hhhheeeeeEEcCc-EEEEEEEecC
Confidence 997 49999999999999973 21 2 122 35789999999997 8888887653
No 34
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=98.61 E-value=5.8e-07 Score=85.69 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=83.5
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
+.+-.|++.| |.|. .+|..-| .-+++.+++.++- ...++||||+|++.-. -.++ . -..
T Consensus 2 i~~I~A~~~~------------~~IG-~~~~lPW-~~~~D~~~Fk~~T-~~~~vIMGRkTyes~~----~plp--~-r~~ 59 (159)
T PRK10769 2 ISLIAALAVD------------RVIG-MENAMPW-NLPADLAWFKRNT-LNKPVIMGRHTWESIG----RPLP--G-RKN 59 (159)
T ss_pred EEEEEEECCC------------CcEe-cCCCcCc-CCHHHHHHHHHHh-CCCeEEEeHHHHHhhh----hhcC--C-CcE
Confidence 4567889999 8885 5777888 5678888777764 4568999999997531 0111 1 125
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
+|+|++... . .++.++ . ++.++++.++ +.++|+|.||+++..+
T Consensus 60 iVlSr~~~~--------~-----------------------~~v~~~---~-~l~~~l~~~~--~~~~I~viGG~~iy~~ 102 (159)
T PRK10769 60 IVISSQPGT--------D-----------------------DRVTWV---K-SVDEALAAAG--DVPEIMVIGGGRVYEQ 102 (159)
T ss_pred EEECCCCCC--------C-----------------------CCEEEE---C-CHHHHHHHhc--CCCCEEEECcHHHHHH
Confidence 677765310 0 111111 1 6778887554 3467999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecC
Q 039210 361 AISSGLIHKVFAFVAPKIIGG 381 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~ 381 (612)
||+. +||++|++.|+.+.+
T Consensus 103 ~l~~--~Del~lT~i~~~~~g 121 (159)
T PRK10769 103 FLPK--AQRLYLTHIDAEVEG 121 (159)
T ss_pred HHHH--CCEEEEEEECccccC
Confidence 9976 999999999999865
No 35
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.34 E-value=1.6e-06 Score=76.26 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=67.3
Q ss_pred CcEEEEEEecCCeEEEEeeCCCC--CCChHHHHHHHHc--------------------------cCCCCCcEEEEcCCCC
Q 039210 67 PNFGCLIATSTGKVAGEGYLYAQ--GTKPAEVQAVEAG--------------------------GSFCRGATAYLNMEPG 118 (612)
Q Consensus 67 ~~vGaViv~~~g~ii~~G~n~~~--~~~HAE~~Ai~~a--------------------------~~~~~g~tlYvTlEPC 118 (612)
..|-|.+|+++|+++..+.|... ..-|||+|.+.-+ +..-.|++|||||.||
T Consensus 8 R~VvA~lv~~~G~l~daa~NtNa~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlqcC 87 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTNADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQCC 87 (136)
T ss_pred cceeEEEECCCCcEEEeeeccCCccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEechhH
Confidence 45778888899999999998654 4689999998654 1124699999999999
Q ss_pred CCCCchhHHHHHHHhCC-------CEEEEEeeCCCchhhhHHHHHHHhCCc
Q 039210 119 DCHGDHTAVSALVQAGI-------TRVVVGIRNPLQHLRGQAVRALRSQGL 162 (612)
Q Consensus 119 ~~~g~~~C~~ai~~agI-------~rVv~~~~dp~~~~~g~g~~~l~~~gi 162 (612)
.||+..+..++. .+|||+..||-+... -..|++.|-
T Consensus 88 -----kMCAalv~a~~d~pg~~~~~~vvY~~ed~G~Lar---dT~L~r~g~ 130 (136)
T PF14439_consen 88 -----KMCAALVCAASDRPGRRVPIDVVYLNEDPGSLAR---DTQLRRRGW 130 (136)
T ss_pred -----HHHHHHHHHHhhCcCCccceEEEEecCCCCcchh---HHHHHHHhh
Confidence 489999998776 899999998876532 234555443
No 36
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=98.31 E-value=4.2e-06 Score=79.95 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=97.4
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccC-CCcccCCCCCCCCe
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDN-PRLTARHGGGHTPM 279 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~-p~L~~r~~~~~~P~ 279 (612)
|.+-+|++.+ |-|. .+|+.-| .-+++.+++.++-. -.+|||||+|++.-. -.|. .-.
T Consensus 2 i~lI~A~~~n------------~~IG-~~~~lPW-~~p~Dl~~Fk~~T~-~~~vIMGrkT~eslp~~pLp-------~R~ 59 (161)
T PF00186_consen 2 ISLIVAVDKN------------GGIG-KDGKLPW-HLPEDLKFFKKLTT-GNPVIMGRKTFESLPFRPLP-------GRI 59 (161)
T ss_dssp EEEEEEEETT------------SEEE-BTTBSSS-SSHHHHHHHHHHHT-TCEEEEEHHHHHHSTGSSBT-------TSE
T ss_pred EEEEEEECCC------------Cccc-CCCcccc-ccHHHHHHHHHccC-CccEEEeeCchhcCCccCCC-------CCe
Confidence 5667888888 8885 5778889 67888888877654 469999999997543 1122 235
Q ss_pred EEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 280 ~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
.||++++.....+ .+.++. ++.++++.++.. .+.|+|-||+.+..
T Consensus 60 niVlSr~~~~~~~---------~~~~~~-------------------------s~~~al~~~~~~-~~~i~ViGG~~iy~ 104 (161)
T PF00186_consen 60 NIVLSRNPDYEPE---------GVEVVS-------------------------SLEEALELAKDK-DEEIFVIGGAEIYE 104 (161)
T ss_dssp EEEESSSTTSCTT---------TSEEES-------------------------SHHHHHHHHTTS-ESEEEEEE-HHHHH
T ss_pred EEEEEcCcccccC---------CceeeC-------------------------CHHHHHHHhhcc-CCcEEEECCHHHHH
Confidence 6888888653221 111221 688888844444 89999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG 411 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g 411 (612)
++|. ++|+++++..+.-.-+ -.. |+.++ ...|+++..+...
T Consensus 105 ~~l~--~~d~l~lT~I~~~~~~---D~~-----fP~~d-~~~~~~~~~~~~~ 145 (161)
T PF00186_consen 105 QFLP--YADRLYLTRIDGDFEG---DTF-----FPEID-ESEFKLVSEEEHP 145 (161)
T ss_dssp HHHH--GESEEEEEEESSESTT---SEE-----CSSCC-TTTEEEEEEEEEE
T ss_pred HHHH--hCCeEEEEEEcCcccc---ceE-----CCCCC-hHHCEEEEEEecc
Confidence 9998 9999999999855522 222 23222 2467777766655
No 37
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.15 E-value=1.7e-05 Score=72.89 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cC-CCCCcEEEE----cC
Q 039210 48 YIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GS-FCRGATAYL----NM 115 (612)
Q Consensus 48 ~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~-~~~g~tlYv----Tl 115 (612)
..+.|.+.++++..- ..+.||||+|+++||+|+. |.|.. ..+.|||+.||.+| |. .+....++. ++
T Consensus 3 l~~~a~~a~~~ay~P-yS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~~i~~i~vv~~~~~~~ 80 (127)
T TIGR01354 3 LFKAAQEARKNAYAP-YSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYRKFVAIAVADSADDPV 80 (127)
T ss_pred HHHHHHHHHHhcCCC-cCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCCCeEEEEEEeCCCCCc
Confidence 567788888887543 2357899999988999998 99864 35789999999998 22 233344443 57
Q ss_pred CCCCCCCchhHHHHHHHhC
Q 039210 116 EPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~ag 134 (612)
.|| .+|-..|.+.+
T Consensus 81 sPC-----G~Crq~l~e~~ 94 (127)
T TIGR01354 81 SPC-----GACRQVLAEFA 94 (127)
T ss_pred Ccc-----HHHHHHHHHhC
Confidence 899 35999999986
No 38
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=98.13 E-value=4e-06 Score=86.94 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=73.7
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCC-eEEEEeeCCCC---CCChHHHHHHHHc------c----
Q 039210 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTG-KVAGEGYLYAQ---GTKPAEVQAVEAG------G---- 103 (612)
Q Consensus 38 ~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g-~ii~~G~n~~~---~~~HAE~~Ai~~a------~---- 103 (612)
.......+..+|+.+|.+|..+.. +.+|||+|+++-. .|++.|--..+ +..|+=|+++... +
T Consensus 160 s~~e~~~~~ri~e~~I~~a~~~~~----~~~~~a~I~~p~~~~Via~~~~~~~~~~P~eh~~mv~v~~v~rrq~~~~~~~ 235 (344)
T KOG2771|consen 160 SDEERGEIARIGELLIAMATDGHA----SRPVSAAIVDPVMDRVIAAGTGEVCAYNPIEHCVMVLVHFVARRQEEGTWDL 235 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcc----ccCccceecCCccceEEecCCCcccccCcHHHHHHHHHHHHHHHHhcccccc
Confidence 333444567899999999998753 3889999998765 56665554433 3367778777543 2
Q ss_pred ---------------------------------CCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCC
Q 039210 104 ---------------------------------SFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPL 146 (612)
Q Consensus 104 ---------------------------------~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~ 146 (612)
-.+.|.++|+|.|||. ||+.|++.++|+||+|+...+.
T Consensus 236 ~~~~~~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~-----MCsMALvHsRikRvfy~~~~s~ 306 (344)
T KOG2771|consen 236 HPIPLLIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCA-----MCSMALVHSRIKRVFYCKPMST 306 (344)
T ss_pred ccccccccccccchhhhhhchhccccccccccceeeecceEEEecChHH-----HHHHHHHHHhhhheeeccCCCC
Confidence 0134789999999994 7999999999999999996433
No 39
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=97.50 E-value=0.0015 Score=62.45 Aligned_cols=116 Identities=11% Similarity=0.153 Sum_probs=77.2
Q ss_pred CceecCCCCcccCCChhHHHHHHHHhh------ccCeEEeccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCccc
Q 039210 223 GKIAASSGHAAWISSKTSRDRVFDLRG------RSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLW 296 (612)
Q Consensus 223 G~ia~~~g~~~wit~~~~~~~~~~lr~------~~DailvG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~ 296 (612)
.-| +.+|+.-|-- +.+.+++..+-. .-.|++|||+|++.-. .+.-.-..-+.||+++++..+..
T Consensus 14 mGI-Gk~g~LPW~l-psemkyF~~vT~~tsd~~k~NaViMGRKtweSiP----~k~RPL~gRiNiVLSR~~~~~~~---- 83 (190)
T KOG1324|consen 14 MGI-GKNGDLPWPL-PSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIP----EKFRPLPGRINVVLSRSLKEDFA---- 83 (190)
T ss_pred cCc-ccCCCCCCCC-HHHHHHHHHHhhccCCcccceeEEecccccccCC----cccCCCCCceEEEEecccCcCcC----
Confidence 444 4677788842 356667666543 3479999999996432 11111223467999998764311
Q ss_pred ccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc----CCCeEEEeecHHHHHHHHHcCCCcEEEE
Q 039210 297 DVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR----GYLSILWECGGTLAASAISSGLIHKVFA 372 (612)
Q Consensus 297 ~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~----g~~~IlveGG~~L~~sfL~~gLVDEi~l 372 (612)
. ... +++++ .+..+|+.|.+. .+..|+|.||+.+.+..|++.+.|.+++
T Consensus 84 ~--t~~-~~~~~------------------------slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~ 136 (190)
T KOG1324|consen 84 P--TEN-VFLSS------------------------SLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHI 136 (190)
T ss_pred C--ccC-EEEec------------------------cHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEE
Confidence 0 011 22221 477888888765 5689999999999999999999999998
Q ss_pred EEe
Q 039210 373 FVA 375 (612)
Q Consensus 373 ~ia 375 (612)
+-.
T Consensus 137 T~I 139 (190)
T KOG1324|consen 137 TEI 139 (190)
T ss_pred EEe
Confidence 754
No 40
>PRK06848 hypothetical protein; Validated
Probab=97.41 E-value=0.0018 Score=60.43 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cCCCCCcEEEEc--
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GSFCRGATAYLN-- 114 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~~~~g~tlYvT-- 114 (612)
.++.+++.|.+.++++.. . .+.+|||++..+||+|+ +|.|-. ..+.|||..||-.| |...-.+.+-|+
T Consensus 6 ~~~~L~~~A~~a~~~ay~-p-s~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~~i~~i~~v~~~ 82 (139)
T PRK06848 6 EDYELIKAAEKVIEKRYR-N-DWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDHEIDTIVAVRHP 82 (139)
T ss_pred HHHHHHHHHHHHHHhccC-C-CCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCCceEEEEEEecC
Confidence 456789999998888864 3 47899999999999988 688853 24689999999988 332111221121
Q ss_pred -----------CCCCCCCCchhHHHHHHHhC
Q 039210 115 -----------MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 115 -----------lEPC~~~g~~~C~~ai~~ag 134 (612)
+.||- .|-+.|.+.+
T Consensus 83 ~~~~~~~~~~~~~PCG-----~CRQvl~E~~ 108 (139)
T PRK06848 83 KPHEDDREIWVVSPCG-----ACRELISDYG 108 (139)
T ss_pred cccccccCCCccCCCh-----hhHHHHHHhC
Confidence 45883 4999999875
No 41
>PRK12411 cytidine deaminase; Provisional
Probab=96.70 E-value=0.023 Score=52.57 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cCCCCCcEEEEc----
Q 039210 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GSFCRGATAYLN---- 114 (612)
Q Consensus 46 ~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~~~~g~tlYvT---- 114 (612)
+...+.|.+.++++... -.+.+|||++...||+|+ +|.|-.. .+.|||..||-+| |.. .=.+++|.
T Consensus 4 ~~L~~~a~~~~~~ay~p-yS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~~-~i~~i~v~~~~~ 80 (132)
T PRK12411 4 KQLIQEAIEARKQAYVP-YSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDK-EFVAIAIVADTK 80 (132)
T ss_pred HHHHHHHHHHHHhcCCC-ccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCCC-ceEEEEEEeCCC
Confidence 35778888888877532 235789999998999988 6887443 4689999999887 332 11333332
Q ss_pred --CCCCCCCCchhHHHHHHHhC
Q 039210 115 --MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 115 --lEPC~~~g~~~C~~ai~~ag 134 (612)
+-||- .|-+.|.+..
T Consensus 81 ~~~sPCG-----~CRQ~l~Ef~ 97 (132)
T PRK12411 81 RPVPPCG-----ACRQVMVELC 97 (132)
T ss_pred CCcCCch-----hHHHHHHHhC
Confidence 35993 5999999853
No 42
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=96.63 E-value=0.011 Score=61.30 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC------CCCChHHHHHHHHc---cCCCCCcEEEEcC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA------QGTKPAEVQAVEAG---GSFCRGATAYLNM 115 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~------~~~~HAE~~Ai~~a---~~~~~g~tlYvTl 115 (612)
++..++.|.+.++++..- --+.+|||++..+||+|.. |.|-. ..+.|||..||-+| |+. +=..+.|+.
T Consensus 22 ~~~L~~~a~~a~~~AyaP-YS~F~VGAall~~~G~iy~-GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~-~i~~Iav~~ 98 (283)
T TIGR01355 22 PKLLPKLIPKAASYARAP-ISKFNVGAVGRGSSGRFYL-GVNVEFPGLPLHHSIHAEQFLISHLALNNER-GLNDLAVSY 98 (283)
T ss_pred HHHHHHHHHHHHhcCcCC-ccCCeeeEEEEeCCCCEEE-EEEeccCCCCCCccccHHHHHHHHHHHcCCC-ceEEEEEEe
Confidence 567788887777776543 4478999999989999874 77754 23689999999988 332 225577778
Q ss_pred CCCCCCCchhHHHHHHHh
Q 039210 116 EPGDCHGDHTAVSALVQA 133 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~a 133 (612)
.||- .|-+.|.+.
T Consensus 99 ~PCG-----~CRQ~l~Ef 111 (283)
T TIGR01355 99 APCG-----HCRQFLNEI 111 (283)
T ss_pred CCcc-----hhHHHHHHh
Confidence 8994 499999886
No 43
>PRK05578 cytidine deaminase; Validated
Probab=96.61 E-value=0.023 Score=52.45 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cC-CCCCcEEEE-----
Q 039210 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GS-FCRGATAYL----- 113 (612)
Q Consensus 47 ~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~-~~~g~tlYv----- 113 (612)
..++.|.+.++++... ..+.+|||++.+.||+|.. |.|-. ..+.|||..||-+| |. .+ -++.+
T Consensus 5 ~L~~~a~~~~~~ay~P-yS~f~Vgaa~~~~~G~i~~-G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i--~~i~vv~~~~ 80 (131)
T PRK05578 5 ELIEAAIEASEKAYAP-YSKFPVGAALLTDDGRIYT-GCNIENASYGLTNCAERTAIFKAISEGGGRL--VAIACVGETG 80 (131)
T ss_pred HHHHHHHHHHHhcCCC-cCCCceEEEEEeCCCCEEE-EEEeeCccccCCcCHHHHHHHHHHHcCCCce--EEEEEEecCC
Confidence 4778888888877543 2357899999988998874 77743 25789999999987 32 22 22333
Q ss_pred -cCCCCCCCCchhHHHHHHHhC
Q 039210 114 -NMEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 114 -TlEPC~~~g~~~C~~ai~~ag 134 (612)
..-||- .|-+.|.+..
T Consensus 81 ~~~sPCG-----~CRQ~l~e~~ 97 (131)
T PRK05578 81 EPLSPCG-----RCRQVLAEFG 97 (131)
T ss_pred CccCccH-----HHHHHHHHhC
Confidence 256993 5999999875
No 44
>PRK09027 cytidine deaminase; Provisional
Probab=96.06 E-value=0.032 Score=58.27 Aligned_cols=80 Identities=20% Similarity=0.106 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC------CCChHHHHHHHHc---cCCCCCcEEEEcCCC
Q 039210 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ------GTKPAEVQAVEAG---GSFCRGATAYLNMEP 117 (612)
Q Consensus 47 ~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~------~~~HAE~~Ai~~a---~~~~~g~tlYvTlEP 117 (612)
..+-..+..|.+.....--+.+|||++...+|+|. .|.|-.. .+.|||..||-.| |+. +=..+.|+.-|
T Consensus 51 ~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge~-~i~~I~v~~sP 128 (295)
T PRK09027 51 ALALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEK-AIADITVNYTP 128 (295)
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCCC-ceEEEEEEecC
Confidence 34433445555443333447899999998899987 5888543 4689999999987 332 23556777889
Q ss_pred CCCCCchhHHHHHHHh
Q 039210 118 GDCHGDHTAVSALVQA 133 (612)
Q Consensus 118 C~~~g~~~C~~ai~~a 133 (612)
|- .|-.-|.+.
T Consensus 129 CG-----~CRQ~l~E~ 139 (295)
T PRK09027 129 CG-----HCRQFMNEL 139 (295)
T ss_pred ch-----hhHHHHHHh
Confidence 94 399998876
No 45
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.037 Score=51.11 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc-cC-CCCCcEEEEc------
Q 039210 47 AYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG-GS-FCRGATAYLN------ 114 (612)
Q Consensus 47 ~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a-~~-~~~g~tlYvT------ 114 (612)
..+..|.+.+..+.. .--+.+|||++..+||+|+ +|.|-. .-+.|||..||-+| .+ ..+=-++++.
T Consensus 7 ~l~~~a~~a~~~ay~-PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~ 84 (134)
T COG0295 7 ELFALAPEAAANAYA-PYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVADTGKP 84 (134)
T ss_pred HHHHHHHHHHHhccC-cccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCC
Confidence 345555555555543 3447899999998888766 588854 34689999999998 11 1111233441
Q ss_pred CCCCCCCCchhHHHHHHHhC-CCEEEEEe
Q 039210 115 MEPGDCHGDHTAVSALVQAG-ITRVVVGI 142 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~ag-I~rVv~~~ 142 (612)
.-||- .|-+-|.+.. =...+|-.
T Consensus 85 ~sPCG-----~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 85 VSPCG-----ACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred cCCcH-----HHHHHHHHhcCCCceEEEe
Confidence 44662 4888888754 33344443
No 46
>PLN02402 cytidine deaminase
Probab=95.94 E-value=0.043 Score=57.33 Aligned_cols=81 Identities=11% Similarity=-0.053 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC------CCChHHHHHHHHc---cCCCCCcEEEEcC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ------GTKPAEVQAVEAG---GSFCRGATAYLNM 115 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~------~~~HAE~~Ai~~a---~~~~~g~tlYvTl 115 (612)
++-.+.++ ..|++.....-.+.+|||++..+||+|.. |.|-.. .+.|||..||-+| |+. +=-.+.|+.
T Consensus 25 ~~ll~~l~-~~A~~~AyaPYS~F~VGAa~l~~~G~i~~-GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~-~i~~iaV~~ 101 (303)
T PLN02402 25 LQLLPSLV-KSAQSLARPPISKYHVGAVGLGSSGRIFL-GVNLEFPGLPLHHSVHAEQFLITNLTLNAEP-HLKYVAVSA 101 (303)
T ss_pred HHHHHHHH-HHHHHhcCCCCCCCeeeEEEEeCCCCEEE-EEeeecCCCCCCCcccHHHHHHHHHHHcCCC-ceEEEEEEe
Confidence 44344444 44443333334468999999988998764 777431 2689999999988 432 124577778
Q ss_pred CCCCCCCchhHHHHHHHh
Q 039210 116 EPGDCHGDHTAVSALVQA 133 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~a 133 (612)
.||- .|-+.|.+.
T Consensus 102 sPCG-----~CRQ~l~Ef 114 (303)
T PLN02402 102 APCG-----HCRQFFQEI 114 (303)
T ss_pred CCCc-----ccHHHHHHh
Confidence 8994 499999987
No 47
>PRK08298 cytidine deaminase; Validated
Probab=95.92 E-value=0.062 Score=49.98 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cCCCCCcEEEE--c-
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GSFCRGATAYL--N- 114 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~~~~g~tlYv--T- 114 (612)
++..++.|.+..+++.. |-.+|||.|..+||+|+ +|.|-. ..+.-||.+||-.| |... =..+.| .
T Consensus 4 ~~~L~~~A~~a~~~aY~---PYS~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~~-~~~i~v~~~~ 78 (136)
T PRK08298 4 EQALYDVAKQLIEQRYP---NGWGGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKRV-THSICVAREN 78 (136)
T ss_pred HHHHHHHHHHHHHhccC---CCCceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCce-EEEEEEEcCC
Confidence 45688889888877753 22389999998999988 688843 35789999999887 3221 122222 1
Q ss_pred -------CCCCCCCCchhHHHHHHHhCCC
Q 039210 115 -------MEPGDCHGDHTAVSALVQAGIT 136 (612)
Q Consensus 115 -------lEPC~~~g~~~C~~ai~~agI~ 136 (612)
+-|| ..|-+.|.+.+-.
T Consensus 79 ~~~~~~~~sPC-----G~CRQvl~Ef~~~ 102 (136)
T PRK08298 79 EHSELKVLSPC-----GVCQERLFYWGPD 102 (136)
T ss_pred CcCCCcccCCC-----hhHHHHHHHhCCC
Confidence 3488 2599999988543
No 48
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.18 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.046 Sum_probs=49.9
Q ss_pred CCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cCCCCCcEEEEc------CCCCCCCCchhHHHHHH
Q 039210 65 PHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GSFCRGATAYLN------MEPGDCHGDHTAVSALV 131 (612)
Q Consensus 65 ~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~~~~g~tlYvT------lEPC~~~g~~~C~~ai~ 131 (612)
-+.+||||++..+|+|.. |.|-. ..+.|||..||.++ |+.---+-..++ ..||- -|-.-|.
T Consensus 40 S~fkVGA~~r~ssGrif~-G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f~tPCG-----~CRQfl~ 113 (173)
T KOG0833|consen 40 SKFKVGAAGRASSGRIFL-GVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDFTTPCG-----VCRQFLR 113 (173)
T ss_pred cCCceEEEEEecCCcEEE-eeeecccCCCCcccHHHHHHHHHHHcCcccceEEEEEecCCCCcCCCcH-----HHHHHHH
Confidence 357999999988888764 88743 35789999999998 332112223333 45882 3999999
Q ss_pred HhCCC-EEEEEee
Q 039210 132 QAGIT-RVVVGIR 143 (612)
Q Consensus 132 ~agI~-rVv~~~~ 143 (612)
+.+-. -|.....
T Consensus 114 Ef~~~~~l~~~~~ 126 (173)
T KOG0833|consen 114 EFGNASLLLEYRA 126 (173)
T ss_pred HHhhcceeeeecC
Confidence 98876 4544443
No 49
>PLN02182 cytidine deaminase
Probab=94.71 E-value=0.22 Score=52.80 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=45.5
Q ss_pred CCCCcEEEEEEecCCeEEEEeeCCCC------CCChHHHHHHHHc---cCC-CCCcEEEEc------CCCCCCCCchhHH
Q 039210 64 SPHPNFGCLIATSTGKVAGEGYLYAQ------GTKPAEVQAVEAG---GSF-CRGATAYLN------MEPGDCHGDHTAV 127 (612)
Q Consensus 64 ~~~~~vGaViv~~~g~ii~~G~n~~~------~~~HAE~~Ai~~a---~~~-~~g~tlYvT------lEPC~~~g~~~C~ 127 (612)
-.+.+|||++...+|+|. .|.|-.. .+.|||..||.+| |+. +..-++.|. .-||- .|-
T Consensus 63 yS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~~i~~iaVaV~~~~~~~~sPCG-----~CR 136 (339)
T PLN02182 63 ISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEKDLCELAVAISTDGKEFGTPCG-----HCL 136 (339)
T ss_pred ccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCCceEEEEEEEecCCCCCcCCCc-----hhH
Confidence 346899999998899877 4877432 2789999999998 332 221123322 56995 399
Q ss_pred HHHHHhC
Q 039210 128 SALVQAG 134 (612)
Q Consensus 128 ~ai~~ag 134 (612)
+-|.+..
T Consensus 137 Qfm~Ef~ 143 (339)
T PLN02182 137 QFLMEMS 143 (339)
T ss_pred HHHHHhC
Confidence 9998874
No 50
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=94.70 E-value=0.2 Score=49.16 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCcEEEEEEe-cCCeEEEEeeCCCC--CCChHHHHHHHHccCCC-------CCcEEEEcCCCCCCCCchhHHHHHHHh-
Q 039210 65 PHPNFGCLIAT-STGKVAGEGYLYAQ--GTKPAEVQAVEAGGSFC-------RGATAYLNMEPGDCHGDHTAVSALVQA- 133 (612)
Q Consensus 65 ~~~~vGaViv~-~~g~ii~~G~n~~~--~~~HAE~~Ai~~a~~~~-------~g~tlYvTlEPC~~~g~~~C~~ai~~a- 133 (612)
++..+=|.-|. .+|.-+-.|+-... ...|||+.-|....... ---|.|+|..||.+.+- -|+..|+..
T Consensus 22 r~~t~Lcy~v~~~~~~~~~~g~~~n~~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~-~Ca~~i~~FL 100 (188)
T PF08210_consen 22 RNKTYLCYEVEGRDGSWVQRGYFRNENCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDH-CCAEKIAEFL 100 (188)
T ss_dssp SSS-EEEEEEEEECTTEEEECECCSTTSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC-----HHHHHHHHH
T ss_pred CCeEEEEEEEEEecCCCceEEEEECCCCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhh-HHHHHHHHHH
Confidence 34556677773 24446666665443 68999999999874322 24689999999953111 199999873
Q ss_pred ------CCCEEEEEee-----CCCchhhhHHHHHHHhCCcEEEEcc
Q 039210 134 ------GITRVVVGIR-----NPLQHLRGQAVRALRSQGLQVHVLG 168 (612)
Q Consensus 134 ------gI~rVv~~~~-----dp~~~~~g~g~~~l~~~gi~V~~~~ 168 (612)
+|+=.+|++. ++.+.....|+..|.++||+|....
T Consensus 101 ~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~iM~ 146 (188)
T PF08210_consen 101 KKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEIMS 146 (188)
T ss_dssp CCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE-S
T ss_pred HHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEEcC
Confidence 4444455543 2222224679999999999998864
No 51
>PRK09027 cytidine deaminase; Provisional
Probab=93.77 E-value=0.49 Score=49.59 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=63.7
Q ss_pred CcccccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cCC-
Q 039210 34 APVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GSF- 105 (612)
Q Consensus 34 ~~~~~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~~- 105 (612)
.+..+.+....++...+.|++.|+++.. ..-+.+|||.|..+||+|+. |.|-. ..+..||..||..+ |..
T Consensus 178 ~~~~~~~~~~~~~~L~~~A~~aa~~SYa-PYS~f~vGaAl~~~dG~i~~-G~nvENAAynpslcaer~Al~~~v~~G~~~ 255 (295)
T PRK09027 178 DPQDHGLALDTGDPLIQAALDAANRSHA-PYSQSYSGVALETKDGRIYT-GRYAENAAFNPSLPPLQGALNLLNLSGEDF 255 (295)
T ss_pred CCcccccccCCHHHHHHHHHHHHHhccC-CccCCceeEEEEeCCCCEEE-EEEEEcCCCCCcccHHHHHHHHHHHcCCCc
Confidence 3444444433445688999999998854 34568899999988999884 76632 46789999999987 442
Q ss_pred --CCCcEEEEc----CCCCCCCCchhHHHHHHHhC
Q 039210 106 --CRGATAYLN----MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 106 --~~g~tlYvT----lEPC~~~g~~~C~~ai~~ag 134 (612)
.+...|+.. +-|| .+|-..|...+
T Consensus 256 ~~i~~i~lv~~~~~~ispc-----g~cRq~L~ef~ 285 (295)
T PRK09027 256 SDIQRAVLVEKADAKLSQW-----DATQATLKALG 285 (295)
T ss_pred cCEEEEEEEeCCCCCcCch-----HHHHHHHHHhC
Confidence 444555543 3466 24777776654
No 52
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=92.15 E-value=0.28 Score=45.94 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=38.2
Q ss_pred ChHHHHHHHHc---cCC-CCCcEEEEcCCCCCCCCchhHHHHH----HHhCCCEEEEEeeC
Q 039210 92 KPAEVQAVEAG---GSF-CRGATAYLNMEPGDCHGDHTAVSAL----VQAGITRVVVGIRN 144 (612)
Q Consensus 92 ~HAE~~Ai~~a---~~~-~~g~tlYvTlEPC~~~g~~~C~~ai----~~agI~rVv~~~~d 144 (612)
.|||+.||.+| |.. -+..||||.-.+|. .|-+.| -++||+++.+-..+
T Consensus 81 ~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~-----~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 81 AHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCG-----YCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHhcCccCCeEEEEECcccch-----HHHHHHHHHHHHcCCCeEEEEecC
Confidence 69999999998 444 68899999988893 386544 46999999887754
No 53
>PLN02402 cytidine deaminase
Probab=87.17 E-value=1.8 Score=45.55 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc
Q 039210 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG 102 (612)
Q Consensus 46 ~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a 102 (612)
..+++.|++.++++.. ..-+.+|||.|+.+||+|+ .|.|-. ..+.+||..||-.+
T Consensus 193 ~~L~~~A~~a~~~sYa-PYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~ 251 (303)
T PLN02402 193 DDLKNEALEAANKSHA-PYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAY 251 (303)
T ss_pred HHHHHHHHHHHHcccC-CccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHH
Confidence 4688999988888754 3456889999998899977 577743 46789999999986
No 54
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=84.51 E-value=2.8 Score=43.70 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc
Q 039210 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG 102 (612)
Q Consensus 46 ~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a 102 (612)
+.+++.|++.++++.. ..-+.+|||.|+++||+|. .|.|-. ..+.+||..||..+
T Consensus 175 ~~l~~~A~~a~~~sYa-PYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~ 233 (283)
T TIGR01355 175 SHLKQQALKAANRSYA-PYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDF 233 (283)
T ss_pred HHHHHHHHHHHHhccC-CCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHH
Confidence 3488889888888754 3457899999998899988 477643 46789999999887
No 55
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=70.58 E-value=12 Score=32.60 Aligned_cols=68 Identities=21% Similarity=0.359 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCc--chHHHHHHHhCCcEEEEecCC-CHHHHHHHHHH-cCCCeEEEeecHHHHHHHHHcCC
Q 039210 299 SDAPTIVVTQRGA--RRKFQKYLASRGVEVVEFDIL-NSRDVMEYFHD-RGYLSILWECGGTLAASAISSGL 366 (612)
Q Consensus 299 ~~~~~iV~t~~~~--~~~~~~~l~~~gv~vi~~~~~-dl~~~l~~L~~-~g~~~IlveGG~~L~~sfL~~gL 366 (612)
...|++++|.+.. ..++.+.|+..|+++-.-.-+ ....+...|++ .+.+++++.|...+...|-++|+
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHTTE
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHHHHHHcCC
Confidence 3567777776553 357888999999874221112 24456667777 69999999999999999988874
No 56
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=68.90 E-value=65 Score=29.97 Aligned_cols=94 Identities=16% Similarity=0.293 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCCchhHHH
Q 039210 49 IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS 128 (612)
Q Consensus 49 M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~~C~~ 128 (612)
|+.|+++=.... .-|||. ++|+|-..-- .....=...+++....++|+.++-..= || .-+.
T Consensus 1 m~~~~~~L~e~~--------~S~Vv~-~~~~i~t~~~----rGv~pL~~ll~~~~~~l~ga~vaDKvv-----GK-AAA~ 61 (134)
T PF08973_consen 1 MEEAIKLLHEEN--------YSCVVL-KDGEIRTSDG----RGVKPLYDLLNEEPEFLKGAVVADKVV-----GK-AAAA 61 (134)
T ss_dssp --HHHHHHHHTT---------SEEEE-SSSEEEEE------STTHHHHHHHHH-S---TT-EEEEEEE------H-HHHH
T ss_pred CHHHHHHHHhCC--------ceEEEE-eCCEEEEeCC----CChHHHHHHHHhChhhhhcccHHHHHH-----hH-HHHH
Confidence 566666554431 347888 8888443211 222334445676677899999997631 22 3677
Q ss_pred HHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEc
Q 039210 129 ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167 (612)
Q Consensus 129 ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~ 167 (612)
.++..||++|+-... +-.+.++|+++||.|.+.
T Consensus 62 lmv~ggv~~vyA~vi------S~~Al~~L~~~gI~v~y~ 94 (134)
T PF08973_consen 62 LMVLGGVKEVYADVI------SEPALDLLEEAGIKVSYD 94 (134)
T ss_dssp HHHHH--SEEEEEEE------EHHHHHHHHHTT--EEEE
T ss_pred HHHHhcHHHHHHHHH------hHHHHHHHHHcCCceeHh
Confidence 788999999987664 234789999999998774
No 57
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.13 E-value=10 Score=35.62 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=47.3
Q ss_pred ccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecC------CCHHHHHHHHHHcCCCeEEEeecHHHHHH----HHHc
Q 039210 295 LWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDI------LNSRDVMEYFHDRGYLSILWECGGTLAAS----AISS 364 (612)
Q Consensus 295 l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~------~dl~~~l~~L~~~g~~~IlveGG~~L~~s----fL~~ 364 (612)
+|.+....++......++.+..+...+..+.+|.+.. .....+++.|+++|..+|+|.+|+-+.-. |-+.
T Consensus 35 ~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~ 114 (143)
T COG2185 35 ALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEM 114 (143)
T ss_pred HHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHh
Confidence 3344444444444445556666666666677766532 34778999999999999996666665543 4444
Q ss_pred CCCcEEE
Q 039210 365 GLIHKVF 371 (612)
Q Consensus 365 gLVDEi~ 371 (612)
| +|+++
T Consensus 115 G-~~~if 120 (143)
T COG2185 115 G-VDRIF 120 (143)
T ss_pred C-cceee
Confidence 4 47764
No 58
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=62.21 E-value=4 Score=37.06 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCCChHHHHHHHHccC-CC---CCcEEEEcCCCCCCCCchhHHHHHHHh-CCCEEEEEeeCC
Q 039210 89 QGTKPAEVQAVEAGGS-FC---RGATAYLNMEPGDCHGDHTAVSALVQA-GITRVVVGIRNP 145 (612)
Q Consensus 89 ~~~~HAE~~Ai~~a~~-~~---~g~tlYvTlEPC~~~g~~~C~~ai~~a-gI~rVv~~~~dp 145 (612)
.+.+|+|..++..+.+ .. +=..||+=+|||.. +.-|+..|-+. -=.+|.|....+
T Consensus 43 ~~~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~--~~~C~~~l~~~~p~a~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAHGVPPEQITELYTELEPCEL--GGYCARMLRNSLPGAEVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHHcCCcHHHHHHHHHhcccccc--cchHHHHHHhhCCCCeEEEeccCC
Confidence 5789999999998742 11 22559999999964 22399988875 234577777543
No 59
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=60.59 E-value=25 Score=32.18 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=36.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCC---CCCCChHHHHHHHHc
Q 039210 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY---AQGTKPAEVQAVEAG 102 (612)
Q Consensus 38 ~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~---~~~~~HAE~~Ai~~a 102 (612)
+.+.....+...+.|++.|+++..- ...-++|++|++++|+|..-.|-. ...+..+...||..+
T Consensus 26 ~~l~~~~~d~l~~~A~~Aa~~syaP-YS~~~sGvAL~~~~G~i~~G~y~EnAAfNPSl~PlQ~AL~~~ 92 (124)
T PF08211_consen 26 HGLALESEDPLVQAALEAANRSYAP-YSKCPSGVALLTSDGRIYTGRYAENAAFNPSLPPLQAALVQA 92 (124)
T ss_dssp -------SSHHHHHHHHHHCT-B-T-TT---EEEEEEETTS-EEEEE-B--TTSTT-B-HHHHHHHHH
T ss_pred CccccCCccHHHHHHHHHHHhccCC-ccCCceeEEEEeCCCCEEEEEEEeecccCCChHHHHHHHHHH
Confidence 3444434445788999999998542 334679999999999998755533 246788999999876
No 60
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=56.63 E-value=13 Score=33.89 Aligned_cols=40 Identities=25% Similarity=0.177 Sum_probs=26.0
Q ss_pred CChHHHHHHHHccC-------CCCCcEEEE-------------cCCCCCCCCchhHHHHHHHhCC
Q 039210 91 TKPAEVQAVEAGGS-------FCRGATAYL-------------NMEPGDCHGDHTAVSALVQAGI 135 (612)
Q Consensus 91 ~~HAE~~Ai~~a~~-------~~~g~tlYv-------------TlEPC~~~g~~~C~~ai~~agI 135 (612)
..|||+.||+++-. .+.++.+|+ -..||. .|+..+.+.||
T Consensus 66 G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~-----nC~~~l~~~~v 125 (125)
T PF14431_consen 66 GRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCR-----NCAALLKHFGV 125 (125)
T ss_pred CcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCc-----hHHHHHhhcCC
Confidence 46999999998721 234444443 235672 29998888776
No 61
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=40.51 E-value=1.7e+02 Score=30.31 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCC----CCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHc-CC--
Q 039210 276 HTPMRIVLTQTLN----LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDR-GY-- 346 (612)
Q Consensus 276 ~~P~~vVvd~~~~----l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~-g~-- 346 (612)
+.+.-||--++++ +.+.+++. .-|..|+....++..+....+..|..+|.++ .-|=+.+-++|.++ |+
T Consensus 71 k~~kgvithSSGNHaqAlalaAk~~---giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~ 147 (323)
T KOG1251|consen 71 KRAKGVITHSSGNHAQALALAAKIL---GIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYL 147 (323)
T ss_pred hhcCceEeecCCcHHHHHHHHHHhc---CCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEE
Confidence 3444455555554 23334443 4578888899999999999999999999995 23445566666654 43
Q ss_pred ----Ce-EEEeecHHHHHHHHHc-CCCcEEEEE
Q 039210 347 ----LS-ILWECGGTLAASAISS-GLIHKVFAF 373 (612)
Q Consensus 347 ----~~-IlveGG~~L~~sfL~~-gLVDEi~l~ 373 (612)
+. =+|-|=++++-.+|++ |.||-+++-
T Consensus 148 i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvp 180 (323)
T KOG1251|consen 148 IHPYNHPSVIAGQGTIALELLEQVGEIDALFVP 180 (323)
T ss_pred eCCCCCcceeeccchHHHHHHHhhCccceEEEe
Confidence 22 2456888899899876 888887653
No 62
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=37.52 E-value=2.1e+02 Score=30.12 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=24.6
Q ss_pred EEEEecCCeEEEEeeCCCCCCChHHHHHH
Q 039210 71 CLIATSTGKVAGEGYLYAQGTKPAEVQAV 99 (612)
Q Consensus 71 aViv~~~g~ii~~G~n~~~~~~HAE~~Ai 99 (612)
++++++|-+++-.|.+...++.|+|...-
T Consensus 2 ~il~~k~tkvivqGitg~~gtfh~~~~l~ 30 (293)
T COG0074 2 SILLNKDTKVIVQGITGKQGTFHTEQMLA 30 (293)
T ss_pred ceeecCCCeEEEeccccccchHHHHHHHH
Confidence 36778899999999999999999987543
No 63
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.01 E-value=1.2e+02 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHcCCCeE-EEeecHH---HHHHHHHcCCCcEEE
Q 039210 333 NSRDVMEYFHDRGYLSI-LWECGGT---LAASAISSGLIHKVF 371 (612)
Q Consensus 333 dl~~~l~~L~~~g~~~I-lveGG~~---L~~sfL~~gLVDEi~ 371 (612)
.+.++++.|++.+..++ ++.||.. ....|.+.| ||+++
T Consensus 66 ~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G-~d~~~ 107 (122)
T cd02071 66 LFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMG-VAEIF 107 (122)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCC-CCEEE
Confidence 35677888888766343 4445422 233466778 77664
No 64
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.56 E-value=84 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHHHHHcCCCeE
Q 039210 334 SRDVMEYFHDRGYLSI 349 (612)
Q Consensus 334 l~~~l~~L~~~g~~~I 349 (612)
+.++++.|+++|...+
T Consensus 69 ~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 69 CKGLRQKCDEAGLEGI 84 (134)
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4555556665555333
No 65
>PRK13907 rnhA ribonuclease H; Provisional
Probab=32.99 E-value=1.2e+02 Score=27.17 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=24.5
Q ss_pred cEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHc
Q 039210 68 NFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102 (612)
Q Consensus 68 ~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a 102 (612)
-.|+||.+.+|.+.-.+.-......+||..|+..|
T Consensus 18 G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~a 52 (128)
T PRK13907 18 GAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAA 52 (128)
T ss_pred EEEEEEEECCeeEEEEecccccCCcHHHHHHHHHH
Confidence 47899987677766555433344578999999765
No 66
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=27.26 E-value=2.4e+02 Score=24.24 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCCEEEEEcC-----Ccc--hHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc----CCCeEEE----eecHHHHHHHHHc
Q 039210 300 DAPTIVVTQR-----GAR--RKFQKYLASRGVEVVEFDILNSRDVMEYFHDR----GYLSILW----ECGGTLAASAISS 364 (612)
Q Consensus 300 ~~~~iV~t~~-----~~~--~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~----g~~~Ilv----eGG~~L~~sfL~~ 364 (612)
..+++|++.. .-+ ....+.|.+.|+++...+-.+-.++.+.|++. .+-.|+| .||..-..++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~ 90 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQS 90 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHC
Confidence 4577777542 112 34567788899998877533224555566554 3233333 4777777788888
Q ss_pred CCCcEE
Q 039210 365 GLIHKV 370 (612)
Q Consensus 365 gLVDEi 370 (612)
|-++++
T Consensus 91 g~L~~~ 96 (97)
T TIGR00365 91 GELQTL 96 (97)
T ss_pred cChHHh
Confidence 766553
No 67
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.47 E-value=1.9e+02 Score=31.09 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=37.7
Q ss_pred CEEEEEcCCcc-----hHHHHHHHhCCcEEEEecCC-------CHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 302 PTIVVTQRGAR-----RKFQKYLASRGVEVVEFDIL-------NSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 302 ~~iV~t~~~~~-----~~~~~~l~~~gv~vi~~~~~-------dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
+++|+++.... ....+.|...|+++..++.+ ++.++++.+++.+...|+-.|||++.-
T Consensus 25 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D 94 (370)
T cd08551 25 KALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLD 94 (370)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 45555544322 23456677788888766321 366777788888888888788887543
No 68
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.79 E-value=1.8e+02 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCchh---HHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEc
Q 039210 121 HGDHT---AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167 (612)
Q Consensus 121 ~g~~~---C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~ 167 (612)
.|++| |+....+||+.|||+++.|+.- .+..+..|.+|..-
T Consensus 26 ~GkpmI~rV~e~a~~s~~~rvvVATDde~I------~~av~~~G~~avmT 69 (247)
T COG1212 26 GGKPMIVRVAERALKSGADRVVVATDDERI------AEAVQAFGGEAVMT 69 (247)
T ss_pred CCchHHHHHHHHHHHcCCCeEEEEcCCHHH------HHHHHHhCCEEEec
Confidence 46764 8999999999999999977652 35566778888763
No 69
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.67 E-value=1.9e+02 Score=30.92 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCEEEEEcCCcchHHHHHHH----hCCcEEEEecCC----CHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEE
Q 039210 301 APTIVVTQRGARRKFQKYLA----SRGVEVVEFDIL----NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFA 372 (612)
Q Consensus 301 ~~~iV~t~~~~~~~~~~~l~----~~gv~vi~~~~~----dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l 372 (612)
.+++|+++......+.+.+. ..++++..++.+ ++.++++.+++.+...|+-.|||++.-.-=-......+-+
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~ 103 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPV 103 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCE
Confidence 45667776544333333333 357776655322 3556777777788888887899886543211111113456
Q ss_pred EEeeEEecC
Q 039210 373 FVAPKIIGG 381 (612)
Q Consensus 373 ~iaP~ilG~ 381 (612)
...|...|.
T Consensus 104 i~VPTT~gt 112 (347)
T cd08172 104 ITVPTLAAT 112 (347)
T ss_pred EEecCcccc
Confidence 667777764
No 70
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=24.59 E-value=1.8e+02 Score=26.38 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=33.0
Q ss_pred chHHHHHHHhCCcEEEEec---CCCHHHHHHHHHHcCCCeEEEeecH
Q 039210 312 RRKFQKYLASRGVEVVEFD---ILNSRDVMEYFHDRGYLSILWECGG 355 (612)
Q Consensus 312 ~~~~~~~l~~~gv~vi~~~---~~dl~~~l~~L~~~g~~~IlveGG~ 355 (612)
+++..+..++.|+.++..+ .-|+..+++.+.+.+...|.|.|+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~ 94 (123)
T PF04263_consen 48 SPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGAL 94 (123)
T ss_dssp -HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-S
T ss_pred ChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455667778899988873 4578899999999999999998853
No 71
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.96 E-value=3.9e+02 Score=22.37 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=39.5
Q ss_pred CCCEEEEEcC-----Cc--chHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc-CC---CeEEE----eecHHHHHHHHHc
Q 039210 300 DAPTIVVTQR-----GA--RRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-GY---LSILW----ECGGTLAASAISS 364 (612)
Q Consensus 300 ~~~~iV~t~~-----~~--~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-g~---~~Ilv----eGG~~L~~sfL~~ 364 (612)
..|++|++.. .- .....+.|.+.|+++...+-..-.++.+.|.+. |. -.|+| .||..-..++.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~ 86 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHES 86 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHc
Confidence 4577888642 11 134467788899988777522224556666654 32 22322 3777777777777
Q ss_pred CCC
Q 039210 365 GLI 367 (612)
Q Consensus 365 gLV 367 (612)
|-+
T Consensus 87 g~L 89 (90)
T cd03028 87 GEL 89 (90)
T ss_pred CCc
Confidence 643
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.91 E-value=3.2e+02 Score=25.11 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=8.4
Q ss_pred HHHHHHHHHHcCCCe
Q 039210 334 SRDVMEYFHDRGYLS 348 (612)
Q Consensus 334 l~~~l~~L~~~g~~~ 348 (612)
..++++.|+++|..+
T Consensus 70 ~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 70 VPALRKELDKLGRPD 84 (132)
T ss_pred HHHHHHHHHhcCCCC
Confidence 455666666655533
No 73
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.90 E-value=1.3e+02 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHhCCcEEEEec-CCCHHHHHHHHHHcCCCeEEE
Q 039210 317 KYLASRGVEVVEFD-ILNSRDVMEYFHDRGYLSILW 351 (612)
Q Consensus 317 ~~l~~~gv~vi~~~-~~dl~~~l~~L~~~g~~~Ilv 351 (612)
..|+..|++++.++ .+.+.++++...+.+..-|.+
T Consensus 25 ~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 25 RALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34555666666553 344555555555554444443
No 74
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=23.39 E-value=4.9e+02 Score=27.97 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHhCCcEEEEec-----CCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHH----cCCCcEEEEEEeeEEe
Q 039210 315 FQKYLASRGVEVVEFD-----ILNSRDVMEYFHDRGYLSILWECGGTLAASAIS----SGLIHKVFAFVAPKII 379 (612)
Q Consensus 315 ~~~~l~~~gv~vi~~~-----~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~----~gLVDEi~l~iaP~il 379 (612)
..+.++..|+++.... ..|...+++++++.+ +-|++.+.......|++ .|+..+=+++|.|=+.
T Consensus 160 l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~ 232 (387)
T cd06386 160 VHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELF 232 (387)
T ss_pred HHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 4456667787766431 348999999999988 77777777776666655 7887655577776443
No 75
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.38 E-value=3.3e+02 Score=28.76 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEee
Q 039210 300 DAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWEC 353 (612)
Q Consensus 300 ~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveG 353 (612)
..++|+ ++...+.+..+.++..|+.++.. --++ +..+.+.+.|..-|.+.|
T Consensus 87 ~v~~v~-~~~g~p~~~i~~lk~~g~~v~~~-v~s~-~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 87 KVPVVT-TGAGNPGKYIPRLKENGVKVIPV-VASV-ALAKRMEKAGADAVIAEG 137 (307)
T ss_pred CCCEEE-EcCCCcHHHHHHHHHcCCEEEEE-cCCH-HHHHHHHHcCCCEEEEEC
Confidence 334444 44445556778888888776532 1123 233556667887777755
No 76
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.62 E-value=1.9e+02 Score=32.83 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=58.1
Q ss_pred EEEEecCCeEEEEeeCCCCCCChHHHHHHHHc---cCCCCCcEEEE-cCCCCCCCCchh-HHHHHHHhCCCEEEEEe-eC
Q 039210 71 CLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---GSFCRGATAYL-NMEPGDCHGDHT-AVSALVQAGITRVVVGI-RN 144 (612)
Q Consensus 71 aViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a---~~~~~g~tlYv-TlEPC~~~g~~~-C~~ai~~agI~rVv~~~-~d 144 (612)
-|++ +||+.|+.|.-+... .++=..|+.+| +..++|+.|=. -..|= + |.....++||+-||--. +-
T Consensus 414 Iv~a-kd~~tvGiGaGQ~sR-V~s~riA~~kA~~~~~~~~G~vlASDAFFPF------~D~ve~aa~aGi~aIiQPGGSi 485 (511)
T TIGR00355 414 IVYA-KNNMTVGVGAGQMSR-VGSAKIAGIKADDEGLEAKGSSLASDAFFPF------RDGVEEAAAAGITCIIQPGGSM 485 (511)
T ss_pred EEEE-eCCeEEEecCCCccH-HHHHHHHHHHHHhhCCCccCcEEEeccccCC------CccHHHHHHcCCEEEEcCCCCC
Confidence 3455 999999999876544 34555688888 67788988855 34565 4 99999999999887521 11
Q ss_pred CCchhhhHHHHHHHhCCcEEEE
Q 039210 145 PLQHLRGQAVRALRSQGLQVHV 166 (612)
Q Consensus 145 p~~~~~g~g~~~l~~~gi~V~~ 166 (612)
.+ ...++.-.++||....
T Consensus 486 RD----~evI~aa~e~giaMvf 503 (511)
T TIGR00355 486 RD----EDSIWAADEHGIVMVF 503 (511)
T ss_pred Cc----HHHHHHHHHhCCEEEE
Confidence 11 2346777788887644
No 77
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=22.21 E-value=2.5e+02 Score=30.58 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCEEEEEcCCcc------hHHHHHHHhCCcEEEEecCC-------CHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 301 APTIVVTQRGAR------RKFQKYLASRGVEVVEFDIL-------NSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 301 ~~~iV~t~~~~~------~~~~~~l~~~gv~vi~~~~~-------dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
.+++|+++.... ......|+..|+++..++.+ ++.++++.+++.+..-|+-.|||++.-
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 98 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPID 98 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHH
Confidence 345566654321 24456777888888776422 356777777888888888788877543
No 78
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.79 E-value=2.7e+02 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHhhccCeEEeccceEe
Q 039210 236 SSKTSRDRVFDLRGRSDAVVVGGNTVR 262 (612)
Q Consensus 236 t~~~~~~~~~~lr~~~DailvG~~T~~ 262 (612)
+++.......+++.+++-+++|++|+.
T Consensus 38 ~tp~a~~~I~~l~~~~~~~~vGAGTVl 64 (201)
T PRK06015 38 RTPAALDAIRAVAAEVEEAIVGAGTIL 64 (201)
T ss_pred CCccHHHHHHHHHHHCCCCEEeeEeCc
Confidence 355566777888888888999999984
No 79
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.36 E-value=2.2e+02 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=12.1
Q ss_pred HHHHHhCCcEEEEecCCCHHHHHHHH
Q 039210 316 QKYLASRGVEVVEFDILNSRDVMEYF 341 (612)
Q Consensus 316 ~~~l~~~gv~vi~~~~~dl~~~l~~L 341 (612)
...|.+.||+++.....++.++|+.+
T Consensus 67 ~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 67 FRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred HHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 34444445555444444444444443
No 80
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=21.31 E-value=2.8e+02 Score=29.91 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcc------hHHHHHHHhCCcEEEEecCC-------CHHHHHHHHH
Q 039210 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGAR------RKFQKYLASRGVEVVEFDIL-------NSRDVMEYFH 342 (612)
Q Consensus 276 ~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~------~~~~~~l~~~gv~vi~~~~~-------dl~~~l~~L~ 342 (612)
..|.+|++-.. ++..-.+.+.. .+.++|+..-..- .+....|+ |++++++..+ .+...++.++
T Consensus 7 ~nPTki~FGkg-~i~~l~~ei~~-~~kVLi~YGGGSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~kaV~i~k 82 (384)
T COG1979 7 HNPTKILFGKG-QIAELREEIPK-DAKVLIVYGGGSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLMKAVEICK 82 (384)
T ss_pred cCCceEEecCc-hHHHHHhhccc-cCeEEEEecCccccccchHHHHHHHhc--CceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46777776543 32211111111 2445555543321 23345554 8999998543 2567888999
Q ss_pred HcCCCeEEEeecHHHHH--HHHHcCC
Q 039210 343 DRGYLSILWECGGTLAA--SAISSGL 366 (612)
Q Consensus 343 ~~g~~~IlveGG~~L~~--sfL~~gL 366 (612)
++++.-||-.||+++.- -|+.++.
T Consensus 83 ee~idflLAVGGGSViD~tK~IAa~a 108 (384)
T COG1979 83 EENIDFLLAVGGGSVIDGTKFIAAAA 108 (384)
T ss_pred HcCceEEEEecCcchhhhHHHHHhhc
Confidence 99999999999999865 3555554
Done!