Query 039210
Match_columns 612
No_of_seqs 476 out of 2749
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3z_A Riboflavin biosynthesis 100.0 1.6E-79 5.3E-84 657.3 35.2 355 43-420 12-370 (373)
2 2g6v_A Riboflavin biosynthesis 100.0 6.6E-79 2.2E-83 657.7 28.5 351 42-422 27-395 (402)
3 2hxv_A Diaminohydroxyphosphori 100.0 2.4E-75 8.3E-80 622.1 33.0 336 46-420 15-355 (360)
4 2b3w_A Hypothetical protein YB 100.0 1.6E-43 5.6E-48 335.9 16.9 147 448-608 14-160 (168)
5 2azn_A HTP reductase, putative 100.0 1.3E-40 4.3E-45 331.5 24.8 210 196-420 1-216 (219)
6 2p4g_A Hypothetical protein; p 100.0 4.8E-36 1.6E-40 307.8 18.5 211 195-422 30-261 (270)
7 3dh1_A TRNA-specific adenosine 100.0 3.4E-33 1.2E-37 270.5 6.1 143 41-201 22-185 (189)
8 2nx8_A TRNA-specific adenosine 100.0 5.7E-33 1.9E-37 267.1 4.6 143 40-200 11-166 (179)
9 2g84_A Cytidine and deoxycytid 100.0 1.4E-31 4.7E-36 261.5 8.2 133 44-193 27-182 (197)
10 2b3j_A TRNA adenosine deaminas 100.0 2.6E-31 8.8E-36 251.4 6.3 136 44-197 6-154 (159)
11 1p6o_A Cytosine deaminase; hyd 100.0 1.9E-30 6.5E-35 245.7 11.7 135 38-193 7-150 (161)
12 1z3a_A TRNA-specific adenosine 100.0 1.7E-31 5.8E-36 254.5 3.5 138 43-198 7-157 (168)
13 2w4l_A DCMP deaminse, deoxycyt 100.0 8.6E-30 2.9E-34 244.7 12.4 131 42-194 10-167 (178)
14 2a8n_A Cytidine and deoxycytid 100.0 4.7E-30 1.6E-34 239.0 7.1 129 44-190 3-144 (144)
15 1wwr_A TRNA adenosine deaminas 100.0 3.8E-30 1.3E-34 245.5 5.2 132 45-195 23-167 (171)
16 1wkq_A Guanine deaminase; doma 100.0 1.6E-29 5.5E-34 239.6 7.4 132 45-194 11-159 (164)
17 2hvw_A Deoxycytidylate deamina 99.9 8.6E-28 2.9E-32 231.5 12.1 117 41-169 38-176 (184)
18 2gd9_A Hypothetical protein YY 99.9 2.7E-28 9.1E-33 237.0 8.4 182 195-421 5-187 (189)
19 1vq2_A DCMP deaminase, deoxycy 99.9 1.1E-27 3.7E-32 233.7 12.7 121 45-187 3-183 (193)
20 3ky8_A Putative riboflavin bio 99.9 5.3E-27 1.8E-31 229.6 13.4 174 195-422 16-195 (197)
21 3jtw_A Dihydrofolate reductase 99.9 1.5E-26 5E-31 223.0 11.3 169 200-421 5-177 (178)
22 2xw7_A Dihydrofolate reductase 99.9 1E-25 3.5E-30 216.8 11.9 168 196-421 1-173 (178)
23 1cz3_A Dihydrofolate reductase 99.9 2.5E-24 8.7E-29 205.3 15.1 162 200-422 2-164 (168)
24 3g8q_A Predicted RNA-binding p 99.9 2.6E-23 8.9E-28 201.2 10.2 89 63-167 18-106 (278)
25 2nyt_A Probable C->U-editing e 99.8 1.8E-19 6.2E-24 174.0 9.6 120 65-204 31-172 (190)
26 3kgy_A Bifunctional deaminase- 99.7 9.3E-18 3.2E-22 167.1 12.8 144 241-421 86-230 (231)
27 1vdr_A DHFR, dihydrofolate red 99.7 3E-16 1E-20 148.5 16.1 155 201-422 3-158 (162)
28 1zdr_A Dihydrofolate reductase 99.6 4.4E-15 1.5E-19 140.8 14.5 154 201-422 2-161 (164)
29 1kmv_A DHFR, dihydrofolate red 99.6 3.4E-15 1.2E-19 144.5 12.0 148 201-407 4-161 (186)
30 1aoe_A DHFR, dihydrofolate red 99.6 7.6E-16 2.6E-20 149.8 6.4 135 197-382 2-142 (192)
31 3cse_A Dihydrofolate reductase 99.6 6.9E-15 2.4E-19 146.5 9.5 137 197-382 2-149 (227)
32 3ix9_A Dihydrofolate reductase 99.5 4.5E-14 1.5E-18 136.7 14.7 156 200-421 24-185 (190)
33 2w3w_A Dihydrofolate reductase 99.5 3.4E-14 1.1E-18 135.2 10.9 136 197-389 2-137 (167)
34 2w9h_A DHFR, dihydrofolate red 99.5 1.1E-13 3.6E-18 130.6 10.6 149 201-421 3-157 (159)
35 3dfr_A Dihydrofolate reductase 99.4 2.2E-12 7.4E-17 122.0 13.3 142 202-409 2-143 (162)
36 3nzb_X Dihydrofolate reductase 99.4 1.1E-12 3.9E-17 128.7 10.5 134 196-380 2-151 (206)
37 1df7_A DHFR, dihydrofolate red 99.4 1.6E-12 5.3E-17 122.7 10.1 128 201-389 2-129 (159)
38 3s9u_A Dihydrofolate reductase 99.4 4.2E-12 1.5E-16 120.3 12.7 143 200-411 5-147 (165)
39 1j3k_A Bifunctional dihydrofol 99.3 8.9E-12 3E-16 127.0 14.7 164 201-422 28-229 (280)
40 3tq8_A Dihydrofolate reductase 99.3 1E-11 3.5E-16 118.9 14.1 153 201-422 3-161 (178)
41 3ia4_A Dihydrofolate reductase 99.3 1.1E-11 3.9E-16 117.0 13.1 142 201-411 3-144 (162)
42 3nrr_A Dihydrofolate reductase 99.3 1.5E-11 5.3E-16 134.6 11.8 133 197-381 11-156 (515)
43 3hj3_A Chain A, crystal struct 99.2 1.2E-11 4.2E-16 135.6 7.2 150 197-407 3-159 (521)
44 3dau_A Dihydrofolate reductase 99.2 5.6E-11 1.9E-15 111.8 10.1 140 201-410 2-141 (159)
45 2bl9_A Dihydrofolate reductase 99.2 1.5E-10 5.1E-15 115.6 12.9 148 203-408 29-220 (238)
46 1uwz_A Cytidine deaminase; CDD 99.1 2.9E-10 9.8E-15 104.2 10.3 91 45-142 3-107 (136)
47 2fr5_A Cytidine deaminase; tet 99.1 4.1E-10 1.4E-14 104.2 10.5 90 38-134 8-110 (146)
48 2z3g_A Blasticidin-S deaminase 99.0 1.5E-09 5E-14 98.7 11.0 86 42-135 4-100 (130)
49 3rg9_A Bifunctional dihydrofol 99.0 3.4E-10 1.2E-14 113.2 5.8 149 195-380 23-192 (240)
50 1juv_A DHFR, dihydrofolate red 99.0 1.9E-10 6.4E-15 111.8 3.4 149 201-389 2-161 (193)
51 3irm_A Bifunctional dihydrofol 98.5 1.8E-07 6.2E-12 102.7 8.1 149 195-379 17-185 (521)
52 3qg2_A Bifunctional dihydrofol 98.4 1.3E-06 4.6E-11 96.7 12.2 132 201-381 28-193 (608)
53 3b8f_A Putative blasticidin S 98.4 7.6E-07 2.6E-11 82.0 8.5 84 44-136 3-102 (142)
54 1r5t_A Cytidine deaminase; zin 98.4 1.7E-06 5.7E-11 79.7 10.6 96 40-142 6-117 (142)
55 3r2n_A Cytidine deaminase; str 98.3 1.4E-06 4.9E-11 79.6 9.2 95 40-142 5-112 (138)
56 2d30_A Cytidine deaminase; pur 98.1 1E-05 3.5E-10 74.2 9.9 91 45-142 12-116 (141)
57 1ctt_A Cytidine deaminase; hyd 97.7 8.6E-05 3E-09 76.1 9.5 84 45-134 49-140 (294)
58 3mpz_A Cytidine deaminase; ssg 97.5 0.00014 4.9E-09 67.0 7.3 89 45-140 25-125 (150)
59 1ctt_A Cytidine deaminase; hyd 97.4 0.00051 1.7E-08 70.4 9.7 84 45-135 188-285 (294)
60 3oj6_A Blasticidin-S deaminase 97.0 0.0041 1.4E-07 57.8 11.1 98 29-134 13-123 (158)
61 3dmo_A Cytidine deaminase; str 96.4 0.016 5.4E-07 52.7 9.7 83 45-134 11-107 (138)
62 4eg2_A Cytidine deaminase; UMP 95.6 0.033 1.1E-06 56.9 9.0 84 45-135 52-144 (298)
63 3v4k_A DNA DC->DU-editing enzy 93.7 0.18 6.1E-06 48.5 8.1 71 91-168 78-162 (203)
64 4eg2_A Cytidine deaminase; UMP 93.0 0.28 9.6E-06 50.0 8.8 85 46-134 193-288 (298)
65 3vow_A Probable DNA DC->DU-edi 92.8 0.41 1.4E-05 45.5 9.0 97 66-168 31-149 (190)
66 3zzm_A Bifunctional purine bio 30.7 1.3E+02 0.0043 32.8 8.4 100 53-166 414-515 (523)
67 2ab1_A Hypothetical protein; H 24.3 90 0.0031 27.1 4.9 44 126-169 53-97 (122)
68 2gm2_A Conserved hypothetical 22.7 77 0.0026 28.0 4.2 43 127-169 57-99 (132)
69 3rrl_A Succinyl-COA:3-ketoacid 21.8 3.3E+02 0.011 26.2 9.0 83 76-168 19-102 (235)
No 1
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=1.6e-79 Score=657.28 Aligned_cols=355 Identities=28% Similarity=0.494 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCC
Q 039210 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG 122 (612)
Q Consensus 43 ~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g 122 (612)
+.|++||++|+++|+++.+.++|||+|||||| +||+||++|||...+++|||++||++|+..++|||||||+|||+|||
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~g~tlyvTlePC~~~G 90 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYG 90 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTTCEEEESSCCCCCCS
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCCCCCcCHHHHHHHHhhHhcCCeEEEEeCCCccCcC
Confidence 34889999999999999988899999999999 79999999999999999999999999999999999999999999999
Q ss_pred ch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccce
Q 039210 123 DH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFS 201 (612)
Q Consensus 123 ~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~V 201 (612)
|| ||+++|+++||+||||+..||++.+.|+|+++|+++||+|+.+++ + +||.++++.||++++++||||
T Consensus 91 ~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l-------~---~e~~~l~~~f~~~~~~~rP~V 160 (373)
T 2b3z_A 91 KTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGIL-------A---DQAERLNEKFLHFMRTGLPYV 160 (373)
T ss_dssp SSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTT-------H---HHHHHHTHHHHHHHHHSSCEE
T ss_pred CChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCc-------c---cccccccceeeeeccccchhh
Confidence 99 599999999999999999999999999999999999999988764 4 999999999999999999999
Q ss_pred eeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC-CCCeE
Q 039210 202 VFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMR 280 (612)
Q Consensus 202 i~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~-~~P~~ 280 (612)
++++|+||| |+|++++|.+.||++++++.++|++|+.+||||+|++||+.|||.|++|++.+ ++|++
T Consensus 161 ~lk~A~SLD------------G~Ia~~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~T~~~d~P~Lt~R~~~g~~~P~r 228 (373)
T 2b3z_A 161 TLKAAASLD------------GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVR 228 (373)
T ss_dssp EEEEEEETT------------SBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEE
T ss_pred eeeeeecCC------------CceeccCCCccccCCHHHHHHHHHHHHHCCEEEEChhhhhhcCCcccccCcCCCCCCeE
Confidence 999999999 99999999999999999999999999999999999999999999999998765 89999
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHcCCCeEEEeecHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSILWECGGTLA 358 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~g~~~IlveGG~~L~ 358 (612)
||+|+++++|+++++|+....|+||+|++.++.++...|...|++++.+. .+|+.++++.|+++|+++||||||++|+
T Consensus 229 vVld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~ 308 (373)
T 2b3z_A 229 VILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVH 308 (373)
T ss_dssp EEECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred EEEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHCCCCEEEEEEhHHHH
Confidence 99999999999989997556899999998877778888888999998773 4899999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 359 ~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
++||++|||||++++++|+++|+.+++++|++.++..+....+|++++++.+++|+++.++.
T Consensus 309 ~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~~ 370 (373)
T 2b3z_A 309 GSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKP 370 (373)
T ss_dssp HHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEE
T ss_pred HHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEEECCcEEEEEEE
Confidence 99999999999999999999998667889987777777788899999999999998665543
No 2
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=6.6e-79 Score=657.71 Aligned_cols=351 Identities=28% Similarity=0.453 Sum_probs=308.6
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCC
Q 039210 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCH 121 (612)
Q Consensus 42 ~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~ 121 (612)
+.+|++||++|+++|+++.+.++|||+|||||| +||+||++|||...+++|||++||++|+..++|||||||+|||+||
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g~~HAE~~Ai~~a~~~~~g~tlyvt~ePC~h~ 105 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHH 105 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEE-ETTEEEEEEECCCTTSCCHHHHHHHHHGGGGGSSCEEESSCCC---
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEE-ECCEEEEEEeCCCCCccHHHHHHHHHhhHhcCCeEEEEeCCCcCCC
Confidence 457999999999999999988899999999999 6999999999999999999999999999999999999999999999
Q ss_pred Cchh-HHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccc
Q 039210 122 GDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPF 200 (612)
Q Consensus 122 g~~~-C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~ 200 (612)
|||| |+.+|+++||+|||||..||++.+.|+|+++|+++||+|..++++ +||.+||+.||++++++|||
T Consensus 106 G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~v~~g~l~----------~e~~~l~~~f~~~~~~~rP~ 175 (402)
T 2g6v_A 106 GRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMM----------SEAEQLNKGFLKRMRTGFPY 175 (402)
T ss_dssp ----CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTT----------THHHHHTHHHHHHHHSSSCE
T ss_pred CCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcEEEeCCcc----------hhhHHHhhhhhhccccccch
Confidence 9995 999999999999999999999999999999999999999987655 89999999999999999999
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCC------
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG------ 274 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~------ 274 (612)
|++|+|+||| |+||+++|.++||++++++.++|++|+.+||||+|++||+.|||.|++|.++
T Consensus 176 V~~k~A~SLD------------G~IA~~~G~s~Wit~~~~r~~~~~lra~~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~ 243 (402)
T 2g6v_A 176 IQLKLGASLD------------GRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQ 243 (402)
T ss_dssp EEEEEEECTT------------CBBCC---CCSCSSCHHHHHHHHHHHHHCSEEEEEHHHHHHHCCCCCCCGGGCCGGGT
T ss_pred heeeeeecCC------------CCCccCCCCcCCcCCHHHHHHHHHHHHhCCEEEECHHHHhhcCccccccccccccccc
Confidence 9999999999 9999999999999999999999999999999999999999999999999763
Q ss_pred -------CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec----CCCHHHHHHHHHH
Q 039210 275 -------GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD----ILNSRDVMEYFHD 343 (612)
Q Consensus 275 -------~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~----~~dl~~~l~~L~~ 343 (612)
.++|++||+|+++++|+++++|+. ..|+||+|+..... .+ ..|++++.+. .+|+.++++.|++
T Consensus 244 ~~~~~~~~~~P~rvVld~~~~lp~~a~~~~~-~~~~iV~t~~~~~~----~l-~~gv~vi~~~~~~g~vdl~~~l~~L~~ 317 (402)
T 2g6v_A 244 ALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQ-PGETWFARTQEDSR----EW-PETVRTLLIPEHKGHLDLVVLMMQLGK 317 (402)
T ss_dssp SSCCGGGCCCCEEEEECTTCCCCTTSGGGSS-SSCEEEEESSCCCS----CC-CTTEEEEECCEETTEECHHHHHHHHHH
T ss_pred ccccccccCCCeEEEECCCCCCChhhHhhcC-CCCEEEEECCcchh----hh-cCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 578999999999999999999965 67899998764211 23 4689998764 3699999999999
Q ss_pred cCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEecC
Q 039210 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422 (612)
Q Consensus 344 ~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~~ 422 (612)
+|+++||||||++|+++||++|||||++|+++|+++|+. +.++|++.++..+....+|++++++.+++|+++++|...
T Consensus 318 ~g~~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~-G~~lf~~~~~~~l~~~~~L~l~~~~~~g~dv~~~~y~~~ 395 (402)
T 2g6v_A 318 QQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSD-ARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGAS 395 (402)
T ss_dssp TTCCEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSS-SCBSCCCCC-------CCCEEEEEEEETTEEEEEEECC-
T ss_pred CCCCEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCC-CcCCCCCccccccccccccEEeEEEEECCcEEEEEEECc
Confidence 999999999999999999999999999999999999974 566887766777777889999999999999999999643
No 3
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=2.4e-75 Score=622.09 Aligned_cols=336 Identities=28% Similarity=0.467 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHc---cCCCCCcEEEEcCCCCCCCC
Q 039210 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG---GSFCRGATAYLNMEPGDCHG 122 (612)
Q Consensus 46 ~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a---~~~~~g~tlYvTlEPC~~~g 122 (612)
+.||++|+++|+++.+.++|||||||||| +||+||++|||...+++|||++||++| +..++|||||||+|||+|||
T Consensus 15 ~~~m~~al~lA~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g 93 (360)
T 2hxv_A 15 ETFMKRAIELAKKGLGRVNPNPPVGAVVV-KDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHG 93 (360)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEE-ETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSCS
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEE-ECCEEEEEEeCCCCCCcCHHHHHHHHHHhcCCCcCCcEEEEecCcccccC
Confidence 46999999999999988899999999999 799999999999999999999999999 88899999999999999999
Q ss_pred ch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccce
Q 039210 123 DH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFS 201 (612)
Q Consensus 123 ~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~V 201 (612)
|| ||+++|+++||+|||||..||++ +.|.|+++|+++||+|..+++ + +||.+|++.||.+.+++||||
T Consensus 94 ~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~v~~g~l-------~---~e~~~l~~~f~~~~~~~rP~V 162 (360)
T 2hxv_A 94 KTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVL-------E---EEVKKLCEFFITYVTKKRPFV 162 (360)
T ss_dssp SSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTT-------H---HHHHHHTHHHHHHHHHSSCEE
T ss_pred CCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcEEEECCc-------c---ccchhccceeeeccccchhhh
Confidence 99 59999999999999999999999 889999999999999988754 4 999999999999999999999
Q ss_pred eeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeEE
Q 039210 202 VFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281 (612)
Q Consensus 202 i~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~v 281 (612)
++|+|+||| |+||+++|.++||+ ++++.++|++|+.+||||+|++||+.|||.|++|++.+++|.+|
T Consensus 163 ~lk~A~SLD------------G~IA~~~G~s~Wit-~~~~~~~~~lr~~~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rv 229 (360)
T 2hxv_A 163 ALKYASTLD------------GKIADHRGDSKWIT-DKLRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRV 229 (360)
T ss_dssp EEEEEEETT------------SEEECTTSCCTTSC-STTHHHHHHHHHHSSEEEEEHHHHHHHCCCCCCCSTTSCCCEEE
T ss_pred eeehhhccC------------CcccCCCCCcccCC-HHHHHHHHHHHHHCCEEEECccchhhhCCcccccCCCCCCCeEE
Confidence 999999999 99999999999999 99999999999999999999999999999999998878899999
Q ss_pred EEcCCCCCCCC-CcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 282 VLTQTLNLPEE-ANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 282 Vvd~~~~l~~~-~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
|+|+++++|++ +++|+.... ++|+++..++ ++. .|+++ .++.+|+.++++.|+++|+++||||||++|+++
T Consensus 230 Vld~~~~~p~~~~~~~~~~~~-~iv~t~~~~~-~~~-----~~v~v-~~~~~dl~~~l~~L~~~g~~~vlVeGG~~L~~s 301 (360)
T 2hxv_A 230 ILDRKGVLSGKVFRVFEENAR-VIVFTESEEA-EYP-----PHVEK-ALSDCSVESILRNLYERDIDSVLVEGGSKVFSE 301 (360)
T ss_dssp EECTTCTTTTCCCGGGSSSSC-EEEEESCSSC-CCC-----TTSEE-EECCCCHHHHHHHHHHTTCCEEEECCCHHHHHH
T ss_pred EECCCCCCChhHhHHhcCCCc-EEEEECCCch-hhc-----cCcEE-EcCCCCHHHHHHHHHhCCCCEEEEEecHHHHHH
Confidence 99999999998 899975333 7888876544 322 37888 553489999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
||++| ||++++++|+++|++ . ++|++. +..+....+|++++++.+++|+ +++|.
T Consensus 302 fL~ag--DEl~l~iaP~llG~G-~-~lf~~~-~~~~~~~~~L~l~~~~~~g~dv-~l~y~ 355 (360)
T 2hxv_A 302 FLDHA--DVVFGFYSTKIFGKG-L-DVFSGY-LSDVSVPPKFKVVNVEFSDSEF-LVEMR 355 (360)
T ss_dssp HGGGC--SEEEEEEESCCCSSS-E-ETTTTC-CCCTTSCCCEEEEEEEEETTEE-EEEEE
T ss_pred HHHCC--CEEEEEEcceEEcCC-C-cccccc-cccccccccceEeEEEEECCcE-EEEEE
Confidence 99999 999999999999953 3 778664 5556678899999999999995 45554
No 4
>2b3w_A Hypothetical protein YBIA; structure, NESG, structural genomics, COG 3236, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.336.1.1
Probab=100.00 E-value=1.6e-43 Score=335.88 Aligned_cols=147 Identities=45% Similarity=0.794 Sum_probs=138.4
Q ss_pred CceEEEeccCCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhcccccc
Q 039210 448 PSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQR 527 (612)
Q Consensus 448 ~~~i~F~~~~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~~ 527 (612)
+++|+||++++||++|||||++||.++ |++|+|+||||||+||. |+ +++++|+.+.+|.+||++||++.+
T Consensus 14 ~~~I~F~~~~~~~~~lSn~~p~pf~~d----g~~y~s~Ehy~qa~Kf~---d~---~~~~~I~~a~~P~~ak~lGr~~~~ 83 (168)
T 2b3w_A 14 DTIINFYSTSDDYGDFSNFAAWPIKVD----GKTWPTSEHYFQAQKFL---DE---KYREEIRRVSSPMVAARMGRDRSK 83 (168)
T ss_dssp SEEEEECCTTSGGGTTSTTSCCCEEET----TEEESSHHHHHHHHHBC---CH---HHHHHHHHCCCHHHHHHHHCCSSS
T ss_pred CCeEEEeeCCCCCcCccCCCCCCEEEC----CEeeCCHHHHHHHhccC---CH---HHHHHHHhCCCHHHHHHHhCccCc
Confidence 448999999999999999999999998 89999999999999985 43 678999999999999999999875
Q ss_pred CCCCcCccchHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCCCCCceeecCCCCCccHhhHHHHHHHHHHhcC
Q 039210 528 QHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGE 607 (612)
Q Consensus 528 ~~~~~~~~~W~~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~~D~~WG~g~~~~G~N~LG~iLM~vR~~l~~~ 607 (612)
+ .+.+|++++.++|++|+++||.|||+||++||+||++.|||+|+.|+|||+|.++.|+|+||++||+||++|+..
T Consensus 84 ~----~~~~W~~~k~~im~~a~~~KF~Qn~~Lr~~LL~Tg~~~LVE~sp~D~iWGiG~~~~G~N~LG~iLM~vR~~L~~~ 159 (168)
T 2b3w_A 84 P----LRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAIE 159 (168)
T ss_dssp C----BCTTHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTTEEEEECCSSCCSSSCTTTTCSCTHHHHHHHHHHHHHHHH
T ss_pred c----cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCceEEeCCCCCCccccCCCCCcchHHHHHHHHHHHHHHhh
Confidence 4 679999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 039210 608 S 608 (612)
Q Consensus 608 ~ 608 (612)
.
T Consensus 160 ~ 160 (168)
T 2b3w_A 160 K 160 (168)
T ss_dssp H
T ss_pred h
Confidence 4
No 5
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=100.00 E-value=1.3e-40 Score=331.54 Aligned_cols=210 Identities=33% Similarity=0.538 Sum_probs=191.9
Q ss_pred cCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCccc-CCCC
Q 039210 196 SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA-RHGG 274 (612)
Q Consensus 196 ~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~-r~~~ 274 (612)
++||||++|+|+||| |+||+++|.+ ||++++++.++|++|+.+||||+|++||+.|||.|++ |.+.
T Consensus 1 ~~rP~V~~~~a~SLD------------G~ia~~~g~~-wit~~~~~~~~~~lr~~~dailvG~~T~~~d~p~L~~~r~~~ 67 (219)
T 2azn_A 1 EKKPYIISNVGMTLD------------GKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKS 67 (219)
T ss_dssp CCCCEEEEEEEEETT------------CBSSCTTCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSCC
T ss_pred CCCCEEEEEEEEcCC------------CCEecCCCCC-CCCCHHHHHHHHHHHHHCCEEEEChhehhhcCCcCccccccC
Confidence 479999999999999 9999999999 9999999999999999999999999999999999999 9876
Q ss_pred CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHH---hCCcEEEEec--CCCHHHHHHHHHHcCCCeE
Q 039210 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA---SRGVEVVEFD--ILNSRDVMEYFHDRGYLSI 349 (612)
Q Consensus 275 ~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~---~~gv~vi~~~--~~dl~~~l~~L~~~g~~~I 349 (612)
+.+|++||+|+++++|+++++|+ ...|+||+|++.++.++.+.+. ..|++++.++ .+|+.++++.|+++|+++|
T Consensus 68 ~~~P~~vV~d~~~~~~~~~~~~~-~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~i 146 (219)
T 2azn_A 68 DRNPVRIVVDSKLRVPLNARVLN-KDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSI 146 (219)
T ss_dssp SSCCEEEEECTTCCCCTTCGGGS-TTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECCCCCCCccchhhc-CCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHcCCCEE
Confidence 78999999999999999999995 4679999998887777777787 8899999874 4899999999999999999
Q ss_pred EEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210 350 LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL 420 (612)
Q Consensus 350 lveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~ 420 (612)
+||||++|+++||++|||||++++++|+++|+.+++++|++.++..+....+|++++++.+++|++ ++|.
T Consensus 147 lveGG~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~~~~~v~-l~y~ 216 (219)
T 2azn_A 147 LLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIV-LEFK 216 (219)
T ss_dssp EEEECHHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEEETTEEE-EEEE
T ss_pred EEeeCHHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEEECCeEE-EEEE
Confidence 999999999999999999999999999999986678899887777777889999999999999965 5554
No 6
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=100.00 E-value=4.8e-36 Score=307.81 Aligned_cols=211 Identities=22% Similarity=0.255 Sum_probs=180.1
Q ss_pred ccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCccc---C
Q 039210 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTA---R 271 (612)
Q Consensus 195 ~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~---r 271 (612)
..+||||++|+|+||| |+ |.++|.++||++++++.++|++|+.+||||+|++||+.|||.|++ |
T Consensus 30 ~~~rP~V~lk~a~SLD------------G~-a~~~g~s~wit~~~~~~~~~~lr~~~DaIlvG~~T~~~d~p~l~~~~~r 96 (270)
T 2p4g_A 30 TINEPECRAIAITSIN------------GS-ATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHG 96 (270)
T ss_dssp HHHCCEEEEEEEEETT------------SB-SCBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCHH
T ss_pred CCCCCEEEEEEEECCC------------CC-cCCCCCccCcCCHHHHHHHHHHHHHCCEEEEChHHhhhhCCcccccccc
Confidence 3689999999999999 99 999999999999999999999999999999999999999999887 4
Q ss_pred CC-----CC--CCCeEEEEcCCCCCCCCCcccccCCCC-E--EEEEcCCc--c---hHHHHHHHhCCcEEEEec--CCCH
Q 039210 272 HG-----GG--HTPMRIVLTQTLNLPEEANLWDVSDAP-T--IVVTQRGA--R---RKFQKYLASRGVEVVEFD--ILNS 334 (612)
Q Consensus 272 ~~-----~~--~~P~~vVvd~~~~l~~~~~l~~~~~~~-~--iV~t~~~~--~---~~~~~~l~~~gv~vi~~~--~~dl 334 (612)
+. .+ .+|.+||+|++++++++.++|.....+ + ||+++... + .++...+...|++++.+. .+|+
T Consensus 97 ~~~~r~~~g~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl 176 (270)
T 2p4g_A 97 IKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPL 176 (270)
T ss_dssp HHHHHHHTTCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHH
T ss_pred ccccccccCCCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCH
Confidence 31 22 389999999999999999999642334 2 77777643 2 456677888899999875 5799
Q ss_pred HHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC-CC
Q 039210 335 RDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG-PD 413 (612)
Q Consensus 335 ~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g-~d 413 (612)
.++++.|+++|+++|+||||++|+++||++|||||++++++|+++|++ +.++|++ + .+....+|++++++.+. ++
T Consensus 177 ~~~l~~L~~~g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~-g~~~f~~--~-~~~~~~~l~l~~~~~~~~~g 252 (270)
T 2p4g_A 177 KIAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPV-ESPLFGK--I-SDDSFTTRLVLEMLSSSPNG 252 (270)
T ss_dssp HHHHHHHHTTTCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSC-SSBTTCS--C-TTSCCCCCEEEEEEEECTTC
T ss_pred HHHHHHHHHCCCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCC-CcCcccC--c-CcCcCcceEEEEEEEeccCC
Confidence 999999999999999999999999999999999999999999999974 5667754 1 13456899999999987 78
Q ss_pred eEEEEEecC
Q 039210 414 MLISGFLQP 422 (612)
Q Consensus 414 vv~~~y~~~ 422 (612)
+++++|.+.
T Consensus 253 ~v~l~Y~~~ 261 (270)
T 2p4g_A 253 LIFSRYKVI 261 (270)
T ss_dssp CEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 888888754
No 7
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.4e-33 Score=270.47 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=114.0
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCC----CCCCChHHHHHHHHccC-----------C
Q 039210 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY----AQGTKPAEVQAVEAGGS-----------F 105 (612)
Q Consensus 41 ~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~----~~~~~HAE~~Ai~~a~~-----------~ 105 (612)
+..+|++||++|+++|+++... +++||||||| +||+||++|||. ..++.|||++||++|+. .
T Consensus 22 ~~~~d~~~M~~Al~lA~~a~~~--~~~pVGAVIV-~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~ 98 (189)
T 3dh1_A 22 SMEETEKWMEEAMHMAKEALEN--TEVPVGCLMV-YNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEV 98 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhC--CCCCEEEEEE-ECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccc
Confidence 3456899999999999998654 5799999999 699999999997 78999999999999853 3
Q ss_pred CCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHH----HHHHHhCC--cEEEEcccchhhHHHHHH
Q 039210 106 CRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQA----VRALRSQG--LQVHVLGEDLQSKIIEEA 179 (612)
Q Consensus 106 ~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g----~~~l~~~g--i~V~~~~~~~~~~~l~~~ 179 (612)
+.|||||||+|||+ ||++||+|+||+|||||..||.....|.. .+.|+.+| |+|..|+ |+
T Consensus 99 l~g~tLYvTlEPC~-----mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gv-------l~-- 164 (189)
T 3dh1_A 99 FEHTVLYVTVEPCI-----MCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGY-------RA-- 164 (189)
T ss_dssp HTTEEEEEEECCBH-----HHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCT-------TH--
T ss_pred cCCeEEEEeCCChH-----HHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCc-------cH--
Confidence 78999999999994 79999999999999999998765433321 13456677 8887765 45
Q ss_pred HHhhhhcccccccccccCccce
Q 039210 180 RKSCLLVNAPLIHRATSRVPFS 201 (612)
Q Consensus 180 ~~e~~~l~~~f~~~~~~~rP~V 201 (612)
+||.+|++.||.+.++++|.-
T Consensus 165 -~e~~~Ll~~Ff~~~~~~~P~~ 185 (189)
T 3dh1_A 165 -EEAVEMLKTFYKQENPNAPKS 185 (189)
T ss_dssp -HHHHHHHHHHTCC--------
T ss_pred -HHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999853
No 8
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.97 E-value=5.7e-33 Score=267.05 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=126.8
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHccC-----CCCCcE
Q 039210 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAGGS-----FCRGAT 110 (612)
Q Consensus 40 ~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a~~-----~~~g~t 110 (612)
+++.+|++||++|+++|+++... +++||||||| +||+||++|||... .+.|||++||++|+. .+.|||
T Consensus 11 ~~~~~d~~~M~~Al~~A~~a~~~--g~~pVGAVIV-~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~t 87 (179)
T 2nx8_A 11 YSLEEQTYFMQEALKESEKSLQK--AEIPIGCVIV-KDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTT 87 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEE
T ss_pred CCcHHHHHHHHHHHHHHHhcccc--CCCCEEEEEE-ECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceE
Confidence 56778999999999999998753 6899999999 69999999999764 489999999999954 489999
Q ss_pred EEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhC----CcEEEEcccchhhHHHHHHHHhhhhc
Q 039210 111 AYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ----GLQVHVLGEDLQSKIIEEARKSCLLV 186 (612)
Q Consensus 111 lYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~----gi~V~~~~~~~~~~~l~~~~~e~~~l 186 (612)
||||+||| .||+++|+++||+|||||..||++...|.++++|++. +++|..++ ++ +||.+|
T Consensus 88 lYvTlEPC-----~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gv-------l~---~e~~~l 152 (179)
T 2nx8_A 88 LFVTIEPC-----VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGL-------LA---ADCANI 152 (179)
T ss_dssp EEEEECCB-----HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECT-------TH---HHHHHH
T ss_pred EEECCCCc-----HHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCC-------CH---HHHHHH
Confidence 99999999 3699999999999999999999998888888888865 78887765 44 999999
Q ss_pred ccccccccccCccc
Q 039210 187 NAPLIHRATSRVPF 200 (612)
Q Consensus 187 ~~~f~~~~~~~rP~ 200 (612)
++.||.+.++++|.
T Consensus 153 ~~~f~~~~r~~~~~ 166 (179)
T 2nx8_A 153 MQTFFRQGRERKKI 166 (179)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc
Confidence 99999998888876
No 9
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.97 E-value=1.4e-31 Score=261.50 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecC-CeEEEEeeCC----CCCCChHHHHHHHHccCC----------CCC
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATST-GKVAGEGYLY----AQGTKPAEVQAVEAGGSF----------CRG 108 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~-g~ii~~G~n~----~~~~~HAE~~Ai~~a~~~----------~~g 108 (612)
+|++||++|+++|+++. .+.+ .|||||||++| |+||++|||+ ..++.|||++||++|+.. ++|
T Consensus 27 ~d~~~M~~Al~~A~~a~-~~~~-~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~g 104 (197)
T 2g84_A 27 APEARMGYVLELVRANI-AADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPA 104 (197)
T ss_dssp SHHHHHHHHHHHHHHHH-HTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCC
T ss_pred HHHHHHHHHHHHHHhhh-hcCC-CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcCC
Confidence 58999999999999997 4433 56899999768 9999999994 578999999999998432 367
Q ss_pred cEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhh--------HHHHHHHhCCcEEEEcccchhhHHHHHHH
Q 039210 109 ATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRG--------QAVRALRSQGLQVHVLGEDLQSKIIEEAR 180 (612)
Q Consensus 109 ~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g--------~g~~~l~~~gi~V~~~~~~~~~~~l~~~~ 180 (612)
||||||+|||. ||++||+++||+|||||..||++...| .+++.|+++||+|..++ ++
T Consensus 105 ~tlYvTlEPC~-----mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gv-------l~--- 169 (197)
T 2g84_A 105 CELVTSAEPCV-----MCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGL-------LR--- 169 (197)
T ss_dssp EEEEEEECCCH-----HHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCT-------TH---
T ss_pred EEEEEeCCCCH-----HHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecC-------CH---
Confidence 99999999993 799999999999999999999887766 68899999999998765 44
Q ss_pred Hhhhhcccccccc
Q 039210 181 KSCLLVNAPLIHR 193 (612)
Q Consensus 181 ~e~~~l~~~f~~~ 193 (612)
+||.+|++.||.+
T Consensus 170 ~e~~~ll~~f~~~ 182 (197)
T 2g84_A 170 DAACALLREYNAC 182 (197)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999975
No 10
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.97 E-value=2.6e-31 Score=251.37 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHccC-----CCCCcEEEEc
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAGGS-----FCRGATAYLN 114 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~~-----~~~g~tlYvT 114 (612)
+|++||++|+++|+++... +++||||||| +||+||++|||.. .++.|||++||++|.. .+.++|||||
T Consensus 6 ~d~~~m~~A~~~A~~a~~~--~~~pVGAviv-~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQL--GEVPIGAIIT-KDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcC--CCCCEEEEEE-ECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 6899999999999998764 6899999999 5999999999986 7899999999999843 6899999999
Q ss_pred CCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHh----CCcEEEEcccchhhHHHHHHHHhhhhccccc
Q 039210 115 MEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS----QGLQVHVLGEDLQSKIIEEARKSCLLVNAPL 190 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~----~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f 190 (612)
+||| .||+++|+++||+||||+..||++...|.++++|++ ++++|..++ ++ +||.+|++.|
T Consensus 83 ~EPC-----~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gv-------l~---~e~~~l~~~f 147 (159)
T 2b3j_A 83 LEPC-----VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGV-------LK---EACSTLLTTF 147 (159)
T ss_dssp ECCC-----HHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCT-------TH---HHHHHHHHHH
T ss_pred CCCc-----HHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCC-------CH---HHHHHHHHHH
Confidence 9999 369999999999999999999999888877888887 688887665 45 9999999999
Q ss_pred ccccccC
Q 039210 191 IHRATSR 197 (612)
Q Consensus 191 ~~~~~~~ 197 (612)
|.+.+++
T Consensus 148 ~~~~r~~ 154 (159)
T 2b3j_A 148 FKNLRAN 154 (159)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9876544
No 11
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.96 E-value=1.9e-30 Score=245.75 Aligned_cols=135 Identities=22% Similarity=0.298 Sum_probs=118.4
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ecCCeEEEEeeCCC----CCCChHHHHHHHHccC----CCCC
Q 039210 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIA-TSTGKVAGEGYLYA----QGTKPAEVQAVEAGGS----FCRG 108 (612)
Q Consensus 38 ~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv-~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~~----~~~g 108 (612)
+.|++.+|++||++|+++|+++... +++||||||| ++||+||++|||.. ..+.|||++||++|.. .+++
T Consensus 7 ~~m~~~~d~~~M~~A~~~A~~a~~~--~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~~~~~~~ 84 (161)
T 1p6o_A 7 GGMASKWDQKGMDIAYEEAALGYKE--GGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKD 84 (161)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcc--CCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhCCccccc
Confidence 3466678999999999999998654 4799999999 48999999999974 4679999999999976 4789
Q ss_pred cEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhccc
Q 039210 109 ATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNA 188 (612)
Q Consensus 109 ~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~ 188 (612)
||||||+|||. ||+++|+++||+|||||..||+. |.+.++|+++||+|.. +++ +||.+|++
T Consensus 85 ~tlYvT~EPC~-----mC~~ai~~agi~rVv~g~~~~~~---g~~~~~l~~~gi~v~~-~~~----------~e~~~l~~ 145 (161)
T 1p6o_A 85 TTLYTTLSPCD-----MCTGAIIMYGIPRCVVGENVNFK---SKGEKYLQTRGHEVVV-VDD----------ERCKKIMK 145 (161)
T ss_dssp EEEEEEECCCH-----HHHHHHHHHTCCEEEEEESSSCC---CTHHHHHHHTTCEEEE-CCC----------HHHHHHHH
T ss_pred cccccCCCCCH-----HHHHHHHHhCCCEEEEEecCCCC---ccHHHHHHhcCCEEEE-ecH----------HHHHHHHH
Confidence 99999999993 69999999999999999998875 4578999999999987 555 89999999
Q ss_pred ccccc
Q 039210 189 PLIHR 193 (612)
Q Consensus 189 ~f~~~ 193 (612)
.||.+
T Consensus 146 ~f~~~ 150 (161)
T 1p6o_A 146 QFIDE 150 (161)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 12
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.96 E-value=1.7e-31 Score=254.52 Aligned_cols=138 Identities=21% Similarity=0.334 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHccC-----CCCCcEEEE
Q 039210 43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAGGS-----FCRGATAYL 113 (612)
Q Consensus 43 ~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~~-----~~~g~tlYv 113 (612)
.+|++||++|+++|+++... +++||||||| +||+||++|||.. ..+.|||++||++|+. .+.||||||
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~--~~~pVGAviV-~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDE--REVPVGAVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhhc--CCCcEEEEEE-ECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 35899999999999998753 5799999999 7999999999975 4679999999999843 478999999
Q ss_pred cCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhC----CcEEEEcccchhhHHHHHHHHhhhhcccc
Q 039210 114 NMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQ----GLQVHVLGEDLQSKIIEEARKSCLLVNAP 189 (612)
Q Consensus 114 TlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~----gi~V~~~~~~~~~~~l~~~~~e~~~l~~~ 189 (612)
|+||| .||+++|+++||+||||+..||++...|.++++|+++ +|+|..++ ++ +||.+|++.
T Consensus 84 TlEPC-----~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gv-------l~---~e~~~l~~~ 148 (168)
T 1z3a_A 84 TLEPC-----VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGI-------LA---DECAALLSD 148 (168)
T ss_dssp EECCC-----HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCT-------TH---HHHHHHHHH
T ss_pred cCCCc-----HHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCC-------CH---HHHHHHHHH
Confidence 99999 3699999999999999999999998888888888876 68887654 55 999999999
Q ss_pred cccccccCc
Q 039210 190 LIHRATSRV 198 (612)
Q Consensus 190 f~~~~~~~r 198 (612)
||.++++++
T Consensus 149 f~~~~r~~~ 157 (168)
T 1z3a_A 149 FFRMRRQEI 157 (168)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcc
Confidence 998876553
No 13
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.6e-30 Score=244.72 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC--------------C---------CChHHHHH
Q 039210 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ--------------G---------TKPAEVQA 98 (612)
Q Consensus 42 ~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~--------------~---------~~HAE~~A 98 (612)
.++|++||++|+++|+++. +|+++||||||++||+||++|||... + +.|||++|
T Consensus 10 ~~~d~~~M~~A~~~A~~s~---~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~A 86 (178)
T 2w4l_A 10 LEWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNA 86 (178)
T ss_dssp CCHHHHHHHHHHHHHTTCC---CSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHH
Confidence 4579999999999999885 57999999999889999999999764 2 48999999
Q ss_pred HHHc-cCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEee---CCCchhhhHHHHHHHhCCcEEEEcccchhhH
Q 039210 99 VEAG-GSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIR---NPLQHLRGQAVRALRSQGLQVHVLGEDLQSK 174 (612)
Q Consensus 99 i~~a-~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~---dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~ 174 (612)
|.+| +..++|+|||||+|||. +|+++|+++||+||||+.. ||++.+. |+++|+++||+|+.. +
T Consensus 87 I~~a~g~~~~g~tlYvTlePC~-----~Ca~aIi~agI~rVVy~~~~~~d~~~~~~--~~~~L~~aGI~V~~~--~---- 153 (178)
T 2w4l_A 87 IMNKNLTDVKGCSMYVALFPCN-----ECAKLIIQAGIKEVIFMSDKYHDSDEATA--ARLLFNMAGVTFRKF--I---- 153 (178)
T ss_dssp HHC----CCTTCEEEEEECCCH-----HHHHHHHHTTCCEEEEEECTTTTSHHHHH--HHHHHHHHTCEEEEC--C----
T ss_pred HHHhcCCCccccEEEEeCCcHH-----HHHHHHHHHCCCEEEEEeccCCCCcchHH--HHHHHHHCCCEEEEc--c----
Confidence 9996 67899999999999994 5999999999999999988 5554443 589999999999873 3
Q ss_pred HHHHHHHhhhhccccccccc
Q 039210 175 IIEEARKSCLLVNAPLIHRA 194 (612)
Q Consensus 175 ~l~~~~~e~~~l~~~f~~~~ 194 (612)
++|.+++..|..+.
T Consensus 154 ------~~~~~l~~~f~~~~ 167 (178)
T 2w4l_A 154 ------PKCSKIVIDFDSIN 167 (178)
T ss_dssp ------CSCSEEEEEGGGC-
T ss_pred ------HHHHHHHHHHHhhc
Confidence 78999999998763
No 14
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.96 E-value=4.7e-30 Score=239.02 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHcc-----CCCCCcEEEEc
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAGG-----SFCRGATAYLN 114 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~-----~~~~g~tlYvT 114 (612)
+|++||++|+++|+++... +++||||||| +||+||++|||.. ..+.|||++||++|. ..+.++|||||
T Consensus 3 ~d~~~m~~A~~~A~~a~~~--~~~~VGAviv-~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T 79 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGER--DEVPIGAVLV-LDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT 79 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHhhcC--CCCCEEEEEE-ECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEEC
Confidence 5889999999999998764 6899999999 5999999999975 458999999999984 36899999999
Q ss_pred CCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHh----CCcEEEEcccchhhHHHHHHHHhhhhccccc
Q 039210 115 MEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS----QGLQVHVLGEDLQSKIIEEARKSCLLVNAPL 190 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~----~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f 190 (612)
+||| .||+++|+++||+||||+..||++...|.+.++|++ ++|+|..++ ++ +||.+|++.|
T Consensus 80 ~ePC-----~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv-------l~---~e~~~l~~~f 144 (144)
T 2a8n_A 80 LEPC-----TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGL-------AE---SESAEILRQF 144 (144)
T ss_dssp ECCB-----HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-----------------------
T ss_pred CCCh-----HHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCC-------CH---HHHHHHHhcC
Confidence 9999 369999999999999999999999888878888887 789998765 44 9999999877
No 15
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.96 E-value=3.8e-30 Score=245.45 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHccC-----CCCCcEEEEcC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAGGS-----FCRGATAYLNM 115 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a~~-----~~~g~tlYvTl 115 (612)
|++||++|+++|+++... +++||||||| +||+||++|||... .+.|||++||++|.. .+.|+|||||+
T Consensus 23 ~~~~M~~A~~~A~~a~~~--~~~pVGAvIV-~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~ 99 (171)
T 1wwr_A 23 KEYFLKVALREAKRAFEK--GEVPVGAIIV-KEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTL 99 (171)
T ss_dssp HHHHHHHHHHHHHHHHHT--TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESS
T ss_pred HHHHHHHHHHHHHhcccC--CCCCEEEEEE-ECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECC
Confidence 788999999999998764 6899999999 59999999999753 589999999999843 68999999999
Q ss_pred CCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHh----CCcEEEEcccchhhHHHHHHHHhhhhcccccc
Q 039210 116 EPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRS----QGLQVHVLGEDLQSKIIEEARKSCLLVNAPLI 191 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~----~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~ 191 (612)
||| .||+++|+++||+||||+..||++...|.+.++|++ ++|+|.. +++ +||.+|++.||
T Consensus 100 EPC-----~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~----------~e~~~ll~~f~ 163 (171)
T 1wwr_A 100 EPC-----IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPL----------EEASELLSEFF 163 (171)
T ss_dssp CCB-----HHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCC----------HHHHHHHHHHH
T ss_pred CCh-----HHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecH----------HHHHHHHHHHH
Confidence 999 369999999999999999999999888877888885 7999987 665 89999999999
Q ss_pred cccc
Q 039210 192 HRAT 195 (612)
Q Consensus 192 ~~~~ 195 (612)
.+++
T Consensus 164 ~~~r 167 (171)
T 1wwr_A 164 KKLR 167 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 16
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=1.6e-29 Score=239.60 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHccC-----CCCCcEEEEcC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAGGS-----FCRGATAYLNM 115 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a~~-----~~~g~tlYvTl 115 (612)
|+.||++|+++|+++...+ +++||||||| +||+||++|||.. ..+.|||++||++|+. .+.|||||||+
T Consensus 11 ~~~~M~~Al~~A~~a~~~g-~~~pVGAVIV-~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT~ 88 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAG-IGGPFGAVIV-KDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSC 88 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SSSSCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCEEEEEE-ECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEeC
Confidence 7889999999999987653 4899999999 7999999999975 4589999999999843 68999999999
Q ss_pred CCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhh----HHHHHH----HhCCcEEEEcccchhhHHHHHHHHhhhhcc
Q 039210 116 EPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRG----QAVRAL----RSQGLQVHVLGEDLQSKIIEEARKSCLLVN 187 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g----~g~~~l----~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~ 187 (612)
||| .||+++|+++||+||||+..||+....| ...+.+ ..++++| .++++ +||.+|+
T Consensus 89 EPC-----~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~----------~e~~~ll 152 (164)
T 1wkq_A 89 EPC-----PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTL----------TEHLSPF 152 (164)
T ss_dssp CCC-----HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCC----------TTTTHHH
T ss_pred CCh-----HHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCH----------HHHHHHH
Confidence 999 3699999999999999999988876655 444553 3567777 44544 8999999
Q ss_pred ccccccc
Q 039210 188 APLIHRA 194 (612)
Q Consensus 188 ~~f~~~~ 194 (612)
+.||.+.
T Consensus 153 ~~f~~~~ 159 (164)
T 1wkq_A 153 QAWRNFA 159 (164)
T ss_dssp HHHHHCT
T ss_pred HHHHhcc
Confidence 9999763
No 17
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.95 E-value=8.6e-28 Score=231.54 Aligned_cols=117 Identities=16% Similarity=0.238 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC-------------------CCChHHHHHHHH
Q 039210 41 SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ-------------------GTKPAEVQAVEA 101 (612)
Q Consensus 41 ~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~-------------------~~~HAE~~Ai~~ 101 (612)
++.+|++||++|+++|+++. +|++||||||| +||+||++|||... .+.|||++||++
T Consensus 38 ~~~~de~~M~~A~~~A~~s~---~~~~~VGAVIV-~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~ 113 (184)
T 2hvw_A 38 RLSWQDYFMANAELISKRST---CNRAYVGAVLV-KNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQ 113 (184)
T ss_dssp CCCHHHHHHHHHHHHGGGCC---CTTCCCEEEEE-ETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcC---CCCCCEEEEEE-ECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHH
Confidence 45679999999999999984 57999999999 69999999999753 268999999999
Q ss_pred c---cCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEccc
Q 039210 102 G---GSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGE 169 (612)
Q Consensus 102 a---~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~ 169 (612)
| +..++|+|||||+|||. ||+++|+++||+||||+..+|++.. ++++|+++||+|+.+.+
T Consensus 114 A~~~g~~l~g~tlYvTlEPC~-----mCa~aIi~agI~rVVy~~~~~~~~~---~~~~L~~aGIeV~~~~~ 176 (184)
T 2hvw_A 114 CAKEGISANNTEIYVTHFPCI-----NCTKALLQAGVKKITYNTAYRIHPF---AIELMTQKEVEYVQHDV 176 (184)
T ss_dssp HHHHTCCCTTEEEEEEECCCH-----HHHHHHHHHTEEEEEEEECCSCCHH---HHHHHHHHTCEEEECCC
T ss_pred HHHcCCCceeEEEEECCCCHH-----HHHHHHHHHCCCeEEEEecCCCCHH---HHHHHHHCCCEEEEecc
Confidence 8 46789999999999993 6999999999999999999887642 48999999999998754
No 18
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.95 E-value=2.7e-28 Score=237.02 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=142.4
Q ss_pred ccCccceeeeeeccccccccccccccccCceecCCCCcccC-CChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCC
Q 039210 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWI-SSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHG 273 (612)
Q Consensus 195 ~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wi-t~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~ 273 (612)
.+++|+|++++|+||| |+|+.++|.+.|+ +++.+ ++|++|+.+|+||||++||+.+++.++
T Consensus 5 ~~~~p~v~~~~A~SlD------------G~Ia~~~g~~~W~~~~~~~--~~~~~~~~~dail~Gr~T~~~~~~~~p---- 66 (189)
T 2gd9_A 5 NLKQRRIILDLAVTLD------------GFIEGKNGEVDWCIMDPDM--GFTDFLNQIDTILYGRKSFDLWGQYIP---- 66 (189)
T ss_dssp CCCCCCEEEEEEECTT------------SEEECTTSCCTTCCCCTTS--CHHHHHHTEEEEEEEHHHHHHHTTC------
T ss_pred CCCCceEEEEEEEccc------------cceECCCCCcCcccCChHH--HHHHHHhcCCEEEEChHHHhhhhhcCC----
Confidence 5779999999999999 9999999999999 76665 599999999999999999999865432
Q ss_pred CCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEee
Q 039210 274 GGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWEC 353 (612)
Q Consensus 274 ~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveG 353 (612)
+.+| |++ +++..++|+ ..|++|+|++.... . .+++++ ..|+.++++.|+++++++|+|||
T Consensus 67 -~~~P-----d~~--~~~~~~~~~--~~~~iV~t~~~~~~------~-~~~~~~---~~~l~~~l~~L~~~~~~~i~v~G 126 (189)
T 2gd9_A 67 -KNED-----PDT--EKELWKLVH--SKKKYVFSRTQNEI------D-NQAIFI---NDNILEEVNKLKKNPGKDIWLYG 126 (189)
T ss_dssp ----------------CCHHHHHH--HSEEEEECCEEETT------T-TEEECC---HHHHHHHHHHHHHSCCSEEEEEE
T ss_pred -CCCC-----ccc--cchhHHHhC--CCCEEEEeCCCCCC------C-CCeEEE---cCCHHHHHHHHHhCCCCeEEEEC
Confidence 2445 433 566666665 35788887653211 1 144433 35899999999999999999999
Q ss_pred cHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEec
Q 039210 354 GGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421 (612)
Q Consensus 354 G~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~ 421 (612)
|++|+++||++|||||++++++|+++|+ +.++|.. +....+|++++++.+++|+++++|.+
T Consensus 127 G~~l~~~~l~~glvDel~l~~~P~~lG~--g~~~f~~-----~~~~~~l~l~~~~~~~~~~~~l~y~~ 187 (189)
T 2gd9_A 127 GASLITTFINLGLVDEFRLSIHPVVLGE--GKPLFID-----VKQRINLKMVNTRTFSSGVVQIVYHW 187 (189)
T ss_dssp CHHHHHHHHHTTCCCEEEEEECSEECSS--SEESSCS-----CCSCEECEEEEEEECTTSCEEEEEEC
T ss_pred hHHHHHHHHHCCCceEEEEEEeCEEeCC--CCccCCC-----CCCCcceEEEEEEEcCCCEEEEEEEe
Confidence 9999999999999999999999999996 3456643 34567899999999999999888864
No 19
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.95 E-value=1.1e-27 Score=233.74 Aligned_cols=121 Identities=24% Similarity=0.316 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC-C---------------------------------
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ-G--------------------------------- 90 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~-~--------------------------------- 90 (612)
|++||++|+.+|+++. ++++||||||| +||+||++|||..+ |
T Consensus 3 d~~fM~~A~~~A~rs~---~~~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESK---CCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSF 78 (193)
T ss_dssp HHHHHHHHHHHHTTCC---CSSBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC----------------
T ss_pred HHHHHHHHHHHHHhcC---CCCCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccc
Confidence 7899999999999984 57899999999 89999999999865 2
Q ss_pred -----------------------CChHHHHHHHHc---cCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEeeC
Q 039210 91 -----------------------TKPAEVQAVEAG---GSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRN 144 (612)
Q Consensus 91 -----------------------~~HAE~~Ai~~a---~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~~d 144 (612)
+.|||++||.+| +..++|+|||||+||| .+|+++|+++||+||||+..
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC-----~~Ca~aIi~aGI~rVvy~~~- 152 (193)
T 1vq2_A 79 GSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC-----PDCAKAIAQSGIKKLVYCET- 152 (193)
T ss_dssp ----CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCC-----HHHHHHHHHHTCCEEEEEEC-
T ss_pred ccccccccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCc-----HHHHHHHHHhCCCEEEEecC-
Confidence 579999999998 5678999999999999 36999999999999999954
Q ss_pred CCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcc
Q 039210 145 PLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVN 187 (612)
Q Consensus 145 p~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~ 187 (612)
++...|.+.++|+++||+|+. +.. +++.+++
T Consensus 153 -~~~~~~~~~~~l~~aGI~v~~-~~~----------~~~~~~~ 183 (193)
T 1vq2_A 153 -YDKNKPGWDDILRNAGIEVFN-VPK----------KNLNKLN 183 (193)
T ss_dssp -CTTCCTTTTHHHHHTTCEEEE-CCG----------GGCCSSC
T ss_pred -CCCcchHHHHHHHHCCCEEEE-eCH----------HHHHHhc
Confidence 444445446999999999987 333 6777666
No 20
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=5.3e-27 Score=229.58 Aligned_cols=174 Identities=21% Similarity=0.292 Sum_probs=137.4
Q ss_pred ccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhH----HHHHHHHhhccCeEEeccceEeccCCCccc
Q 039210 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS----RDRVFDLRGRSDAVVVGGNTVRRDNPRLTA 270 (612)
Q Consensus 195 ~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~----~~~~~~lr~~~DailvG~~T~~~d~p~L~~ 270 (612)
-++||+|++++|+||| |+||+++|++.|+++..+ ...++++|+..|+|||||+||+ +.+++
T Consensus 16 ~~~~p~v~l~~A~SlD------------G~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~e---~~~~~ 80 (197)
T 3ky8_A 16 YFQGMANIVFIATSLD------------GYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLD---MVLSF 80 (197)
T ss_dssp TTTTCEEEEEEEEETT------------SEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHH---HHCCT
T ss_pred hcCCCeEEEEEEECCC------------CceECCCCCcCcCcCCCccchHHHHHHHHHHhCCEEEEcHHHhH---hHhhc
Confidence 4789999999999999 999999999999987643 4568999999999999999996 34444
Q ss_pred C--CCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCe
Q 039210 271 R--HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLS 348 (612)
Q Consensus 271 r--~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~ 348 (612)
+ ++ ..+|. ||+|+++..++.. + . .+++++ ..|+.++++.|+++++++
T Consensus 81 ~~~~P-~~~~~-iVls~~~~~~~~~--~---~---------------------~~~~~v---~~~l~~~l~~L~~~~~~~ 129 (197)
T 3ky8_A 81 DCDWP-YSKPV-FVLSNTMTEVPQG--Y---E---------------------DKVFLV---KGKLVDIIADLNAKGFNE 129 (197)
T ss_dssp TCCCC-CSSCE-EEECSSCCSCCTT--C---T---------------------TTEEEE---CSCHHHHHHHHHHTTCCE
T ss_pred CCCCC-CCCcE-EEEeCCCCCCccc--c---C---------------------CCEEEE---eCCHHHHHHHHHhCCCCe
Confidence 3 22 23344 7777775432110 0 0 122222 238999999999999999
Q ss_pred EEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEecC
Q 039210 349 ILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422 (612)
Q Consensus 349 IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~~ 422 (612)
|+|+||+++ ++||++|||||++++++|+++|+ +.++|.. ++...+|++++++.+++|+++++|.+.
T Consensus 130 i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~--G~~~f~~-----~~~~~~l~l~~~~~~~~g~v~l~Y~~~ 195 (197)
T 3ky8_A 130 LYIDGGVTI-QNFLKEDLIDEMVITRFPILLGG--GVPLFGE-----LESSLSFNVIKSEVVLDSLTQTTYHRK 195 (197)
T ss_dssp EEEESHHHH-HHHHHTTCCCEEEEEEESEECSS--SEESCCC-----CSSCEEEEEEEEEEETTTEEEEEEEEC
T ss_pred EEEEehHHH-HHHHhCCCCCEEEEEEeeEEECC--CCcccCC-----CCcCcceEEEEEEEeCCCEEEEEEEEc
Confidence 999999999 99999999999999999999997 4556643 345678999999999999999999754
No 21
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.93 E-value=1.5e-26 Score=222.98 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=135.8
Q ss_pred ceeeeeeccccccccccccccccCceecCCCCcccCCCh----hHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC
Q 039210 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK----TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG 275 (612)
Q Consensus 200 ~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~----~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~ 275 (612)
-|++++|+||| |+|+.++|++.|++++ +++.++|++|+.+||||||++||+.++|.+....+..
T Consensus 5 kv~l~~A~SlD------------G~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~~~~~p~~~~~~~p~ 72 (178)
T 3jtw_A 5 KVILFIAMSID------------NYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVY 72 (178)
T ss_dssp CEEEEEEEETT------------CEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTT
T ss_pred EEEEEEEEecc------------eEEECCCCCcCcccccCCccchhhHHHHHHhcCCEEEEChHHHhhhhhccCCCCCCC
Confidence 48999999999 9999999999999876 6788999999999999999999999987554332223
Q ss_pred CCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecH
Q 039210 276 HTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGG 355 (612)
Q Consensus 276 ~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~ 355 (612)
+.+.+||++++...+. .+++++ ..|+.++++.|+++++++|+|+||+
T Consensus 73 ~~~~~iV~s~~~~~~~------------------------------~~~~~~---~~~l~~~l~~l~~~~~~~i~v~GG~ 119 (178)
T 3jtw_A 73 ADRQTYIVTSHLGEDT------------------------------DKIKYW---KQSPVELVKRIQKEKGKDVWIVGGA 119 (178)
T ss_dssp TTSEEEEECSSCCCCC------------------------------SSEEEE---CSCHHHHHHHHHTSSCCEEEEEECH
T ss_pred CCCCEEEEeCCCCCCC------------------------------CCEEEE---cCCHHHHHHHHHhCCCCEEEEEChH
Confidence 4455677776643211 122222 1389999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEec
Q 039210 356 TLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421 (612)
Q Consensus 356 ~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~ 421 (612)
+++++||+++||||++++++|+++|+ +.++|.. +....+|++++++.++ +.++++|.+
T Consensus 120 ~l~~~~l~~~lvDel~l~~~p~~~G~--g~~~f~~-----~~~~~~l~l~~~~~~~-~~v~l~Y~r 177 (178)
T 3jtw_A 120 KIIDPLVQANLIDTYILTTVPIFLGS--GIRLFDR-----LEEQVPVRLIDVYQKN-ELVYSIYQR 177 (178)
T ss_dssp HHHHHHHHTTCCSEEEEEEESCCCCS--SEESSSC-----CCSCCCEEEEEEEEET-TEEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEEEecEEEcC--CCcccCC-----CCcCcceEEeEEEEEC-CEEEEEEEe
Confidence 99999999999999999999999997 4555543 4556789999999997 666777753
No 22
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.93 E-value=1e-25 Score=216.81 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=128.5
Q ss_pred cCccceeeeeeccccccccccccccccCceecCCCCcccCCChhH----HHHHHHHhhccCeEEeccceEeccCCCcccC
Q 039210 196 SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTS----RDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR 271 (612)
Q Consensus 196 ~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~----~~~~~~lr~~~DailvG~~T~~~d~p~L~~r 271 (612)
+++|+|++++|+|+| |+|++++|++.|++++.+ .+++|++|+.+|+||||++||+.+++. .+
T Consensus 1 ~~mp~v~~~~A~SlD------------G~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~dailmGr~T~~~~~~~--~~ 66 (178)
T 2xw7_A 1 SHMVKTVYYTASSLD------------GYIVDENQSLDWLTSRDITPDGPFGYEQFIETIGVLVMGASTYEWVVEH--GD 66 (178)
T ss_dssp CCSCCEEEEEEEETT------------SBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHTEEEEEEEHHHHHHHHHS--SC
T ss_pred CCCcEEEEEEEEccc------------CceECCCCCcccccCCCCcccchhhHHHHHHhCCEEEECHHHHhhhhcC--CC
Confidence 468999999999999 999999999999987544 458899999999999999999988642 11
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc-CCCeEE
Q 039210 272 HGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-GYLSIL 350 (612)
Q Consensus 272 ~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-g~~~Il 350 (612)
++ ...| .||++++. ++. ....+++++ ..|+.++++.|+++ ++++|+
T Consensus 67 ~P-~~~~-~iV~s~~~-~~~---------------------------~~~~~~~~~---~~dl~~~l~~L~~~~~~~~v~ 113 (178)
T 2xw7_A 67 WS-YDQP-AWVLTHRP-EIA---------------------------AESHPMQVF---SGDVAELHPELVAAAGGKDVW 113 (178)
T ss_dssp CC-CSSC-EEEECSCG-GGC---------------------------BTTBCCEEE---CSCHHHHHHHHHHHTTTSEEE
T ss_pred CC-CCCC-EEEEeCCC-CCc---------------------------CCCCCEEEE---CCCHHHHHHHHHhccCCCcEE
Confidence 11 1223 45555441 110 011234433 24899999999997 569999
Q ss_pred EeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEec
Q 039210 351 WECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQ 421 (612)
Q Consensus 351 veGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~ 421 (612)
||||++|+++||++|||||++++++|+++|+ +.++|... . +|++++++.+ ++.++++|.+
T Consensus 114 v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~--g~~~f~~~-----~---~l~l~~~~~~-~~~v~l~y~~ 173 (178)
T 2xw7_A 114 VVGGGDVAAQFVAADLIDEIIVSYAPCTLGV--GSRVLPMR-----S---EWVLDDCARN-GDFVCARWKR 173 (178)
T ss_dssp EEECHHHHHHHHHTTCCCEEEEEEESEECSS--SSBSSCSC-----E---ECEEEEEEEE-TTEEEEEEEC
T ss_pred EEccHHHHHHHHHCCCCeEEEEEEeceEecC--CCcCCCCC-----C---ceEEEeEEEe-CCeEEEEEEE
Confidence 9999999999999999999999999999996 45566432 1 7999999999 5667777764
No 23
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.91 E-value=2.5e-24 Score=205.27 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=129.7
Q ss_pred ceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCe
Q 039210 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279 (612)
Q Consensus 200 ~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~ 279 (612)
-|++++|+|+| |+|+.++| .|+ +++++.++|++|+.+|+||||++|++. ++ + +....|.
T Consensus 2 kv~l~~A~slD------------G~Ia~~~~--~W~-~~~~~~~~~~~~~~~dailmGr~T~~~----l~-~-p~~~~~~ 60 (168)
T 1cz3_A 2 KVIFVLAMDVS------------GKIASSVE--SWS-SFEDRKNFRKITTEIGNVVMGRITFEE----IG-R-PLPERLN 60 (168)
T ss_dssp EEEEEEEECTT------------CEEECSCT--TCS-CHHHHHHHHHHHHHHTEEEEEHHHHHH----HC-S-CCTTSEE
T ss_pred eEEEEEEEcCC------------CeEECCCC--CCC-ChHHHHHHHHHHHhCCEEEEChHHhhc----CC-C-CCCCCeE
Confidence 38999999999 99999988 899 899999999999999999999999984 33 2 2234454
Q ss_pred EEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 280 ~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
+|+|+++.. . .. .+++++ ..|+.++++.|+++++++|+||||+++++
T Consensus 61 -~V~s~~~~~-~-------~~---------------------~~~~~~---~~~l~~~l~~l~~~~~~~i~v~GG~~l~~ 107 (168)
T 1cz3_A 61 -VVLTRRPKT-S-------NN---------------------PSLVFF---NGSPADVVKFLEGKGYERVAVIGGKTVFT 107 (168)
T ss_dssp -EEECSSCCC-C-------SC---------------------TTEEEE---CSCHHHHHHHHHHTTCSEEEEEECHHHHH
T ss_pred -EEECCCCCc-c-------CC---------------------CCEEEE---eCCHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 567766420 0 00 122222 24899999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCC-CeEEEEEecC
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGP-DMLISGFLQP 422 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~-dvv~~~y~~~ 422 (612)
+||++|||||++++++|+++|++ .++|. .++...+|++++++.+++ |+++++|.+.
T Consensus 108 ~~l~~~lvDel~l~~~p~~lG~g--~~~f~-----~~~~~~~l~l~~~~~~~~~~~~~l~Y~~~ 164 (168)
T 1cz3_A 108 EFLREKLVDELFVTVEPYVFGKG--IPFFD-----EFEGYFPLKLLEMRRLNERGTLFLKYSVE 164 (168)
T ss_dssp HHHHTTCCSEEEEEECSEEESSC--EESSC-----CCSCEEEEEEEEEEECSSSCCEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEeceecCCC--CcCCC-----CCCcccccEEeeeEEeCCCCEEEEEEEEc
Confidence 99999999999999999999963 44553 344567899999999999 9999999753
No 24
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.89 E-value=2.6e-23 Score=201.20 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=80.4
Q ss_pred CCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCCchhHHHHHHHhCCCEEEEEe
Q 039210 63 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGI 142 (612)
Q Consensus 63 ~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~agI~rVv~~~ 142 (612)
+.|||||||||| +||+||++|.+ ++.|||++||+ +..++|||||||+|||+ +|+++|+|+||+|||||.
T Consensus 18 t~PNPpVGAVIV-kDGeIIA~Ge~---gTaHAEInAIr--g~~L~GaTLYVTLEPC~-----MCAgAII~AGIkRVVYGa 86 (278)
T 3g8q_A 18 EIPKRTVTAALL-EGGEIVAVEEA---DDEHAERKLVR--RHDVEGKVVFVTARPCL-----YCARELAEAGVAGVVYLG 86 (278)
T ss_dssp HSCCSSCEEEEE-ETTEEEEEEEC---SSSCHHHHHHH--HSCCTTCEEEESSCCCH-----HHHHHHHTTTCCEEEEEE
T ss_pred cCCCCCEEEEEE-ECCEEEEecCC---CCCCHHHHHhC--CCCCCCcEEEEeCCchH-----HHHHHHHHhCCCEEEEEe
Confidence 469999999999 79999999954 99999999998 67899999999999994 599999999999999999
Q ss_pred eCCCchhhhHHHHHHHhCCcEEEEc
Q 039210 143 RNPLQHLRGQAVRALRSQGLQVHVL 167 (612)
Q Consensus 143 ~dp~~~~~g~g~~~l~~~gi~V~~~ 167 (612)
.+. |.|.++|+++||+|+..
T Consensus 87 ~~~-----G~G~e~LreAGIEV~~L 106 (278)
T 3g8q_A 87 RGR-----GLGPYYLARSGVEVVEV 106 (278)
T ss_dssp CSS-----CCHHHHHHTTTCEEEEE
T ss_pred cCC-----ChhHHHHHHCCCEEEEe
Confidence 642 55789999999999874
No 25
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.79 E-value=1.8e-19 Score=173.97 Aligned_cols=120 Identities=14% Similarity=0.225 Sum_probs=95.5
Q ss_pred CCCcEEEEEEec-C---CeEEEEeeCCC-CCCChHHHHHHHHccC----CCC-CcEEEEcCCCCCCCCchhHHHHHHHh-
Q 039210 65 PHPNFGCLIATS-T---GKVAGEGYLYA-QGTKPAEVQAVEAGGS----FCR-GATAYLNMEPGDCHGDHTAVSALVQA- 133 (612)
Q Consensus 65 ~~~~vGaViv~~-~---g~ii~~G~n~~-~~~~HAE~~Ai~~a~~----~~~-g~tlYvTlEPC~~~g~~~C~~ai~~a- 133 (612)
.+....|..|.. + +.||++|||.. .++.|||++||++|+. .+. |||||||+|||+ +|+++|+++
T Consensus 31 r~~tyLcy~v~~~~~~~~~ii~~G~~~~~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~-----~Ca~aIi~al 105 (190)
T 2nyt_A 31 RNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA-----ACADRIIKTL 105 (190)
T ss_pred CCceEEEEEEEecCCCCCCeEEEEECCCCCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHH-----HHHHHHHHhh
Confidence 356789999953 2 56999999998 7999999999999864 344 999999999994 499999999
Q ss_pred ----CCCEEEEEeeCCC---chhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccc-cCc---ccee
Q 039210 134 ----GITRVVVGIRNPL---QHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRAT-SRV---PFSV 202 (612)
Q Consensus 134 ----gI~rVv~~~~dp~---~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~-~~r---P~Vi 202 (612)
||++||||..|+. +.+. .|+++|+++||+|..... + +++..|+.++. .++ ||+.
T Consensus 106 ~~~~gI~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~~~~-----------~---e~~~~w~~fv~~~~~~~~pf~~ 170 (190)
T 2nyt_A 106 SKTKNLRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRIMKP-----------Q---DFEYVWQNFVEQEEGESKAFQP 170 (190)
T ss_pred hhcCCccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEEecH-----------H---HHHHHHHHHHHccCCcCCccHh
Confidence 9999999998873 4443 789999999999986421 2 34555666665 667 8887
Q ss_pred ee
Q 039210 203 FK 204 (612)
Q Consensus 203 ~k 204 (612)
.+
T Consensus 171 W~ 172 (190)
T 2nyt_A 171 WE 172 (190)
T ss_pred HH
Confidence 54
No 26
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.74 E-value=9.3e-18 Score=167.13 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=99.2
Q ss_pred HHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHH
Q 039210 241 RDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLA 320 (612)
Q Consensus 241 ~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~ 320 (612)
..++.++.+.+|++||||+||+.-...+....+ ..-..||+|++...++.. .....+.+.
T Consensus 86 ~~~~~~~~~~i~~vIMGRkTye~~~~~wp~~~p--~~r~~iVlS~~~~~~~~~-----~~~~~v~~v------------- 145 (231)
T 3kgy_A 86 NDMVRHTFERTGAHIMGKRMFEGGERGWPEEAP--FHTPVYVLTHERRNPWVR-----PGGTTFYFV------------- 145 (231)
T ss_dssp HHHHHHHHHTEEEEEEEHHHHHHHHHHSCSSCS--CCSEEEEECSSCCCCEEE-----TTTEEEEEE-------------
T ss_pred HHHHHHHHhcCCEEEEChhhhhhhhhhcCCcCc--CCCcEEEEcCCCCCcccc-----CCCcEEEEE-------------
Confidence 345556778899999999999753211111101 022457777775432210 000111111
Q ss_pred hCCcEEEEecCCCHHHHHHHHHH-cCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccc
Q 039210 321 SRGVEVVEFDILNSRDVMEYFHD-RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA 399 (612)
Q Consensus 321 ~~gv~vi~~~~~dl~~~l~~L~~-~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~ 399 (612)
.-|+.++++.|++ .++++|+|+||++|+++||++|||||++|+++|+++|+ +.++|.+.. ...
T Consensus 146 ----------~~~l~eal~~l~~~~~~~~I~V~GG~~l~~~~L~~gLvDel~lti~Pv~lG~--G~~lF~~~~----~~~ 209 (231)
T 3kgy_A 146 ----------NDGPEQALALAREAAGERDIRISGGANVIQQYLNLGLVDELEIALIPVIFGG--GRRLFENLH----EPL 209 (231)
T ss_dssp ----------CSCHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCSS--SEESSCSCC----SSC
T ss_pred ----------cCCHHHHHHHHHhhcCCCcEEEeCCHHHHHHHHhCCCCCEEEEEEeceeccC--CCccCCCCC----Ccc
Confidence 1279999999987 69999999999999999999999999999999999996 455665421 124
Q ss_pred cCcEeeeEEEeCCCeEEEEEec
Q 039210 400 LDLIDICYEQVGPDMLISGFLQ 421 (612)
Q Consensus 400 ~~L~l~~~~~~g~dvv~~~y~~ 421 (612)
..|++. .+.+.++++.++|.+
T Consensus 210 ~~l~l~-~~~~~~Gvv~l~Y~r 230 (231)
T 3kgy_A 210 PQFRID-RVLASPTATHLRYVR 230 (231)
T ss_dssp CCEEEE-EEEECSSCEEEEEEE
T ss_pred ceeEEE-EEEcCCCEEEEEEEe
Confidence 567776 678999999999964
No 27
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=99.69 E-value=3e-16 Score=148.53 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=117.1
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+|+ ++|...|+.-+++..++.+ ....|++||||+||+... +.......
T Consensus 3 i~~~~A~s~d------------G~Ig-~~g~l~W~~~~~d~~~f~~-~t~~~~vimGRkTyes~~-------~pl~~r~~ 61 (162)
T 1vdr_A 3 LVSVAALAEN------------RVIG-RDGELPWPSIPADKKQYRS-RIADDPVVLGRTTFESMR-------DDLPGSAQ 61 (162)
T ss_dssp EEEEEEEEET------------SEEE-BTTBCSSCCCHHHHHHHHH-HTSSSCEEEEHHHHHHTT-------TSCCSSSE
T ss_pred EEEEEEEcCC------------CcEE-CCCCccccCChHHHHHHHH-hhCCCEEEEcchHHhhCC-------ccCCcCeE
Confidence 7889999999 9999 8899999444566666544 457899999999998642 11223456
Q ss_pred EEEcCCCC-CCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 281 IVLTQTLN-LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 281 vVvd~~~~-l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
||+|++.. ..+ .++.++ . |+.++++.|++++.++|+|.||+++.+
T Consensus 62 iV~S~~~~~~~~------------------------------~~~~~~---~-~~~~~l~~l~~~~~~~i~viGG~~l~~ 107 (162)
T 1vdr_A 62 IVMSRSERSFSV------------------------------DTAHRA---A-SVEEAVDIAASLDAETAYVIGGAAIYA 107 (162)
T ss_dssp EEECSSCCCCCS------------------------------SSCCEE---S-SHHHHHHHHHHTTCSCEEEEECHHHHH
T ss_pred EEEcCCCcccCC------------------------------CCEEEE---C-CHHHHHHHHHhCCCCcEEEECCHHHHH
Confidence 78887753 211 111111 1 789999999998999999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEecC
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQP 422 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~~~ 422 (612)
+||+ +|||++|++.|++++| .++|. ..+ ...|++++.+.++ +++.++|.+.
T Consensus 108 ~~l~--lvDel~lt~ip~~~~G---~~~Fp-----~~~-~~~~~l~~~~~~~-~~~~~~Y~~~ 158 (162)
T 1vdr_A 108 LFQP--HLDRMVLSRVPGEYEG---DTYYP-----EWD-AAEWELDAETDHE-GFTLQEWVRS 158 (162)
T ss_dssp HHGG--GCSEEEEEEEEEECCC---SEECC-----CCC-TTTEEEEEEEECS-SCEEEEEEEC
T ss_pred HHHH--hCCEEEEEEEcccccc---CEECC-----CCC-chHCEEEEEecCC-CEEEEEEEEC
Confidence 9996 8999999999999953 33453 333 4679999999887 8888888764
No 28
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=99.62 E-value=4.4e-15 Score=140.82 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=114.7
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+|+ ++|+..|.. +++..++.+ ....|+|||||+||+.- . +.......
T Consensus 2 i~~~~A~s~d------------G~Ig-~~g~l~W~~-~~d~~~f~~-~t~~~~vimGRkTyes~----~---~pl~~r~~ 59 (164)
T 1zdr_A 2 ISHIVAMDEN------------RVIG-KDNRLPWHL-PADLAYFKR-VTMGHAIVMGRKTFEAI----G---RPLPGRDN 59 (164)
T ss_dssp EEEEEEEETT------------CEEE-BTTBCSSCC-HHHHHHHHH-HHTTSEEEEEHHHHHHH----C---SCCTTSEE
T ss_pred EEEEEEEcCC------------CeEe-CCCCcccCC-HHHHHHHHH-HhcCCEEEECCcHHhcC----C---CCCCCCeE
Confidence 6889999999 9996 889899963 456666654 56789999999999743 1 11234467
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++....+ .++.++ . |+.++++.|++ +.++|+|.||+++.++
T Consensus 60 iV~S~~~~~~~------------------------------~~~~~~---~-~~~~~l~~l~~-~~~~i~viGG~~l~~~ 104 (164)
T 1zdr_A 60 VVVTGNRSFRP------------------------------EGCLVL---H-SLEEVKQWIAS-RADEVFIIGGAELFRA 104 (164)
T ss_dssp EEECSCTTCCC------------------------------TTCEEE---C-SHHHHHHHHHT-CCSCEEEEECHHHHHH
T ss_pred EEEcCCCCcCC------------------------------CCeEEE---C-CHHHHHHHHhc-CCCeEEEECcHHHHHH
Confidence 88887753211 112221 1 78899999987 4789999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC----C--CeEEEEEecC
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG----P--DMLISGFLQP 422 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g----~--dvv~~~y~~~ 422 (612)
||+ ||||++|++.|++++| .++|. ..+ ...|++++.+.++ + +.+++.|.+.
T Consensus 105 ~l~--lvDel~lt~ip~~~~G---~~~Fp-----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 105 TMP--IVDRLYVTKIFASFPG---DTFYP-----PIS-DDEWEIVSYTPGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp HGG--GCCEEEEEEESSCCCC---SEECC-----CCC-TTTEEEEEEEECCCSSSSCSCEEEEEEEEC
T ss_pred HHH--hCCEEEEEEeccccCC---cEECC-----CCC-hhHcEEEEEEecccccCCCceEEEEEEEEc
Confidence 996 9999999999999943 33453 333 4679999999987 4 6888888754
No 29
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=99.60 E-value=3.4e-15 Score=144.49 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=109.3
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccC------eEEeccceEeccCCCcccCCCC
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSD------AVVVGGNTVRRDNPRLTARHGG 274 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~D------ailvG~~T~~~d~p~L~~r~~~ 274 (612)
|++.+|+|+| |+| +.+|+..|+.-+++..++.++....| +|||||+||+.-.+ +.+.
T Consensus 4 i~~i~A~s~d------------G~I-g~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~----~~~p 66 (186)
T 1kmv_A 4 LNCIVAVSQN------------MGI-GKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE----KNRP 66 (186)
T ss_dssp EEEEEEECTT------------CEE-EBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCG----GGCS
T ss_pred EEEEEEECCC------------CCE-eCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCc----ccCC
Confidence 7889999999 999 78999999545677778888888887 99999999975321 1122
Q ss_pred CCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc----CCCeEE
Q 039210 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR----GYLSIL 350 (612)
Q Consensus 275 ~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~----g~~~Il 350 (612)
......||+|++....++ .+.++. -|+.++++.|++. +.++|+
T Consensus 67 l~~r~~iVlSr~~~~~~~---------~~~~v~------------------------~~~~~al~~lk~~~~~~~~~~i~ 113 (186)
T 1kmv_A 67 LKGRINLVLSRELKEPPQ---------GAHFLS------------------------RSLDDALKLTEQPELANKVDMVW 113 (186)
T ss_dssp CTTSEEEEECSSCSSCCT---------TCSEEE------------------------SSHHHHHHHHTSTTTTTTEEEEE
T ss_pred CCCCeEEEECCCCccCCC---------CCEEEE------------------------CCHHHHHHHHhhcccccCCCeEE
Confidence 234467899887542110 110111 1788999999874 488999
Q ss_pred EeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeE
Q 039210 351 WECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407 (612)
Q Consensus 351 veGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~ 407 (612)
|.||+++.++||+++||||++|++.|+++|++ . +|.. ++ ...|++++.
T Consensus 114 ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d--~-~Fp~-----~~-~~~~~l~~~ 161 (186)
T 1kmv_A 114 IVGGSSVYKEAMNHPGHLKLFVTRIMQDFESD--T-FFPE-----ID-LEKYKLLPE 161 (186)
T ss_dssp ECCCHHHHHHHHTSCSCEEEEEEEESSCCCCS--E-ECCC-----CC-TTTCEECSC
T ss_pred EEcCHHHHHHHhcCCCCCEEEEEEeCcccCCC--e-ECCC-----CC-hhHcEEEEe
Confidence 99999999999999999999999999999963 2 4532 22 256776654
No 30
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=99.59 E-value=7.6e-16 Score=149.84 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=101.9
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhh------ccCeEEeccceEeccCCCccc
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRG------RSDAVVVGGNTVRRDNPRLTA 270 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~------~~DailvG~~T~~~d~p~L~~ 270 (612)
++|.|++.+|+||| |++++++|+..|. -+++..++.++.. ..|+|||||+||+...+.
T Consensus 2 ~~~~i~~i~A~sld------------g~iig~~g~lpW~-~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~--- 65 (192)
T 1aoe_A 2 LKPNVAIIVAALKP------------ALGIGYKGKMPWR-LRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQK--- 65 (192)
T ss_dssp CSCCEEEEEEEETT------------TTEEEBTTBCSCC-CHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGG---
T ss_pred CCCEEEEEEEEcCC------------CCeECCCCCCCCC-ChhHHHHHHHHhcCCCcccCCCEEEECchHhhccccc---
Confidence 47899999999999 9999999999997 4566667777653 469999999999865321
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEE
Q 039210 271 RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSIL 350 (612)
Q Consensus 271 r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~Il 350 (612)
++.-+....||+|++..... .. ..++| . -|+.++++. + ++.++|+
T Consensus 66 -~~pl~~r~~iVlS~~~~~~~-----~~--~~~~v-~------------------------~~~~~al~~-~-~~~~~i~ 110 (192)
T 1aoe_A 66 -FRPLPDRLNIILSRSYENEI-----ID--DNIIH-A------------------------SSIESSLNL-V-SDVERVF 110 (192)
T ss_dssp -GCSCTTSEEEEECTTCCCEE-----EE--TTEEE-E------------------------SSHHHHHHT-C-CSEEEEE
T ss_pred -ccCCCCCeEEEEcCCCcccc-----CC--CCEEE-E------------------------CCHHHHHHh-h-cCCCeEE
Confidence 11223456788888743110 00 01111 1 168888887 4 4788999
Q ss_pred EeecHHHHHHHHHcCCCcEEEEEEeeEEecCC
Q 039210 351 WECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382 (612)
Q Consensus 351 veGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~ 382 (612)
|.||++|+++||+++||||++|++.|+++|++
T Consensus 111 ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G 142 (192)
T 1aoe_A 111 IIGGAEIYNELINNSLVSHLLITEIEHPSPES 142 (192)
T ss_dssp ECCCHHHHHHHTTSTTEEEEEEEEEECSCGGG
T ss_pred EEcCHHHHHHHhcCCCCCEEEEEEEEcccCCC
Confidence 99999999999999999999999999999974
No 31
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=99.55 E-value=6.9e-15 Score=146.51 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=102.0
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------cCeEEeccceEeccCCCccc
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------SDAVVVGGNTVRRDNPRLTA 270 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~L~~ 270 (612)
.+|.|++.+|+||| |++++++|+..|. -+.+..++.++... .|+|||||+||+.-.+.+
T Consensus 2 ~~~~i~livA~Sld------------g~iiG~~g~lpW~-l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~w-- 66 (227)
T 3cse_A 2 SKVPVVGIVAALLP------------EMGIGFQGNLPWR-LAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKF-- 66 (227)
T ss_dssp -CCCEEEEEEEETT------------TTEEEBTTBCSCC-CHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGG--
T ss_pred CCcEEEEEEEEcCC------------CCEECCCCCcCCC-ChHHHHHHHHHHccCCcccccCEEEECchhhhcccccc--
Confidence 46889999999999 9999999999997 45666777776644 699999999998642211
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc-----C
Q 039210 271 RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-----G 345 (612)
Q Consensus 271 r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-----g 345 (612)
| .-.....||+|++...+.. .... .++|. -++.++++.|++. +
T Consensus 67 r--Plp~r~~iVlSr~~~~~~~----~~~~-~~~v~-------------------------~sl~~al~~lk~~~~~~~~ 114 (227)
T 3cse_A 67 R--PLPKRINVVVSRSFDGELR----KVED-GIYHS-------------------------NSLRNCLTALQSSLANENK 114 (227)
T ss_dssp C--SCTTSEEEEECTTSSSSCE----EEET-TEEEE-------------------------SCHHHHHHHHTCHHHHTTC
T ss_pred c--CCCcCeEEEEeCCCccccc----cCCC-CEEEe-------------------------CCHHHHHHHHHhhhcccCC
Confidence 1 1223467888887532110 0001 12211 1788999999864 7
Q ss_pred CCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCC
Q 039210 346 YLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGK 382 (612)
Q Consensus 346 ~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~ 382 (612)
+++|+|.||++|.++|| +||||++|++.|+++|++
T Consensus 115 ~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G 149 (227)
T 3cse_A 115 IERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETT 149 (227)
T ss_dssp EEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSC
T ss_pred CCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCC
Confidence 89999999999999999 999999999999999974
No 32
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=99.55 E-value=4.5e-14 Score=136.73 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=113.4
Q ss_pred ceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCe
Q 039210 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279 (612)
Q Consensus 200 ~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~ 279 (612)
-|++.+|+|+| |+| +++|+..|.. +++..++.++. ..|+|||||+||+.-.. + + -..-.
T Consensus 24 ~i~~i~A~s~d------------G~I-G~~g~lpW~~-~~D~~~fk~~t-~~~~vIMGRkTyesi~~----~-p-lp~r~ 82 (190)
T 3ix9_A 24 KIVAIWAQDEE------------GVI-GKDNRLPWYL-PAELQHFKETT-LNHAILMGRVTFDGMGR----R-L-LPKRE 82 (190)
T ss_dssp CEEEEEEECTT------------CEE-EBTTBCSCCC-HHHHHHHHHHH-TTSEEEEEHHHHHHTTT----C-C-CTTCE
T ss_pred eEEEEEEECCC------------CcE-eCCCCcCCCC-hHHHHHHHHHh-cCCeEEEcCcchhhcCc----c-C-CCCCE
Confidence 48999999999 999 5899999964 45555655543 45999999999975321 1 1 11224
Q ss_pred EEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 280 ~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
.||+|++....++ ++.++ -|+.++++.|+++ .++|+|.||+++..
T Consensus 83 ~iVlSr~~~~~~~------------------------------~~~v~----~~~~eal~~lk~~-~~~i~ViGG~~ly~ 127 (190)
T 3ix9_A 83 TLILTRNPEEKID------------------------------GVATF----HDVQSVLDWYSAQ-EKNLYIVGGKQIFQ 127 (190)
T ss_dssp EEEECCSCCSCCS------------------------------SSEEE----SSHHHHHHHHHTS-CSCEEEEECHHHHH
T ss_pred EEEEcCCCCCCCC------------------------------CEEEE----CCHHHHHHHHHhC-CCCEEEECCHHHHH
Confidence 6788877543211 11111 1789999999987 68999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCC------eEEEEEec
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPD------MLISGFLQ 421 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~d------vv~~~y~~ 421 (612)
+||. ||||++|++.|++ |. +.++|... .+ ...|++++.+.+..+ ..++.|.+
T Consensus 128 ~~l~--liDel~lt~ip~~-g~--Gd~lFp~~----~~-~~~~~lv~~~~~~~~~~~~~~~~f~~y~r 185 (190)
T 3ix9_A 128 AFEP--YLDEVIVTHIHAR-VE--GDTYFPAE----FD-LSLFETVSSKFYTKDEKNPYDFTIQYRKR 185 (190)
T ss_dssp HHGG--GCSEEEEEEESSC-CC--CSEECCCC----CC-GGGEEEEEEEEECCBTTBCSCEEEEEEEE
T ss_pred HHHh--hCCEEEEEEeCcc-cc--cCCcCCCC----CC-ccccEEEEEEeccCCCcCCceEEEEEEEE
Confidence 9995 9999999999999 75 45555431 22 467999999999876 77777765
No 33
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=99.52 E-value=3.4e-14 Score=135.17 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=97.2
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCC
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGH 276 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~ 276 (612)
.+|.|++.+|+|+| |+| +.+|+..|.. +++..++.++.. .++|||||+|++.- ..+.+...
T Consensus 2 ~~~~i~~i~A~s~d------------G~I-g~~g~lpW~~-~~d~~~f~~~t~-~~~viMGRkTyes~----~~~~~pl~ 62 (167)
T 2w3w_A 2 TRAEVGLVWAQSTS------------GVI-GRGGDIPWSV-PEDLTRFKEVTM-GHTVIMGRRTWESL----PAKVRPLP 62 (167)
T ss_dssp -CCCCEEEEEEETT------------SEE-EBTTBCSCCC-HHHHHHHHHHHT-TSEEEEEHHHHHHS----CGGGSSCT
T ss_pred CceEEEEEEEECCC------------CcC-cCCCCcCccc-hHHHHHHHHHhc-CCeEEEcchHhhhc----CccccCCC
Confidence 36779999999999 999 6788889964 455666666544 69999999999753 22112223
Q ss_pred CCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHH
Q 039210 277 TPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGT 356 (612)
Q Consensus 277 ~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~ 356 (612)
....||+|++....++ ++.++ . |+.+++ .|+ ++.++|+|.||++
T Consensus 63 ~r~~iV~S~~~~~~~~------------------------------~~~~~---~-~~~~~l-~l~-~~~~~i~ViGG~~ 106 (167)
T 2w3w_A 63 GRRNVVVSRRPDFVAE------------------------------GARVA---G-SLEAAL-AYA-GSDPAPWVIGGAQ 106 (167)
T ss_dssp TSEEEEECSCTTCCCT------------------------------TSEEE---S-SHHHHH-HHT-TTCSSCEEEECHH
T ss_pred CCeEEEEeCCCCCCCC------------------------------CEEEE---C-CHHHHH-Hhh-cCCCeEEEEchHH
Confidence 4467888887432110 11111 1 678888 666 6788999999999
Q ss_pred HHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcc
Q 039210 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVS 389 (612)
Q Consensus 357 L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~ 389 (612)
+.++||+ ||||++|++.|+++|...+.++|.
T Consensus 107 l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp 137 (167)
T 2w3w_A 107 IYLLALP--HATRCEVTEIEIDLRRDDDDALAP 137 (167)
T ss_dssp HHHHHGG--GCSEEEEEEEECCCCCCTTSEECC
T ss_pred HHHHHHH--HCCEEEEEEEEeecCCCCccEeCC
Confidence 9999998 999999999999998222445554
No 34
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=99.48 E-value=1.1e-13 Score=130.65 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=105.8
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+| +.+|+..|.. +++..++.++. ..|+|||||+|++.- . ++ ......
T Consensus 3 i~~~~A~s~d------------G~I-g~~g~lpW~~-~~d~~~f~~~t-~~~~viMGRkTyes~----~--~p-l~~r~~ 60 (159)
T 2w9h_A 3 LSILVAHDLQ------------RVI-GFENQLPWHL-PNDLKHVKKLS-TGHTLVMGRKTFESI----G--KP-LPNRRN 60 (159)
T ss_dssp EEEEEEECTT------------CEE-EBTTBCSSCC-HHHHHHHHHHH-TTSEEEEEHHHHHHH----C--SC-CTTSEE
T ss_pred EEEEEEECCC------------CeE-cCCCccCccc-hHHHHHHHHHh-cCCEEEECCChhhcc----c--cc-CCCCEE
Confidence 7889999999 999 7889999974 44555655543 489999999999753 1 11 123356
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++..... . .+.++. ++.++++. .++|+|.||+++.++
T Consensus 61 iV~S~~~~~~~--------~-~~~~~~-------------------------~~~~~l~~-----~~~i~viGG~~l~~~ 101 (159)
T 2w9h_A 61 VVLTSDTSFNV--------E-GVDVIH-------------------------SIEDIYQL-----PGHVFIFGGQTLFEE 101 (159)
T ss_dssp EEECSCTTCCC--------T-TCEEEC-------------------------SGGGGGGS-----CSCEEEEECHHHHHH
T ss_pred EEEcCCCCcCC--------C-CeEEEC-------------------------CHHHHHhc-----CCcEEEEChHHHHHH
Confidence 88888743211 0 111211 34455443 678999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC----C--CeEEEEEec
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG----P--DMLISGFLQ 421 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g----~--dvv~~~y~~ 421 (612)
||+ ||||++|++.|++++| .++|.. ++ ...|++++.+.++ + +.+.++|.+
T Consensus 102 ~l~--lvDel~lt~ip~~~~G---d~~Fp~-----~~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y~r 157 (159)
T 2w9h_A 102 MID--KVDDMYITVIEGKFRG---DTFFPP-----YT-FEDWEVASSVEGKLDEKNTIPHTFLHLIR 157 (159)
T ss_dssp HTT--TCSEEEEEEECSCCCC---SEECCC-----CC-TTTEEEEEEEECCCBTTBCSCEEEEEEEE
T ss_pred HHH--hCCEEEEEEecccccC---CeeCCC-----CC-hhHcEEEEEEeccccccCCccEEEEEEEE
Confidence 996 9999999999999943 345533 33 2579999999987 5 688888865
No 35
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=99.40 E-value=2.2e-12 Score=122.01 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=100.8
Q ss_pred eeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeEE
Q 039210 202 VFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRI 281 (612)
Q Consensus 202 i~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~v 281 (612)
.+.+|+|+| |+|+ .+|+..|.- +++.+++.++. ..|++||||+||+.-. .+.. .....|
T Consensus 2 ~li~A~s~d------------g~IG-~~g~lpW~~-~~D~~~F~~~t-~~~~viMGRkTyes~~----~~pl--p~r~~i 60 (162)
T 3dfr_A 2 AFLWAQNRN------------GLIG-KDGHLPWHL-PDDLHYFRAQT-VGKIMVVGRRTYESFP----KRPL--PERTNV 60 (162)
T ss_dssp EEEEEECTT------------CEEE-BTTBCSSCC-HHHHHHHHHTT-TTSEEEEEHHHHHHSS----SSSC--TTSEEE
T ss_pred EEEEEECCC------------CeEe-CCCCCCCCc-HHHHHHHHHHh-cCCeEEEecchhhhcc----cccC--CCCcEE
Confidence 467899999 9995 699999954 44555555443 3699999999997542 1111 123467
Q ss_pred EEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHHH
Q 039210 282 VLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASA 361 (612)
Q Consensus 282 Vvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sf 361 (612)
|+|++...++ .++.++ -|+.++++.|++++.++|+|.||+++.++|
T Consensus 61 VlS~~~~~~~------------------------------~~~~~~----~~~~~~l~~lk~~~~~~i~viGG~~l~~~~ 106 (162)
T 3dfr_A 61 VLTHQEDYQA------------------------------QGAVVV----HDVAAVFAYAKQHLDQELVIAGGAQIFTAF 106 (162)
T ss_dssp EECSCTTCCC------------------------------TTSEEE----SSHHHHHHHHHHCCSSCEEECCCHHHHHHT
T ss_pred EEcCCCCCCC------------------------------CCEEEE----CCHHHHHHHHhcCCCCCEEEECCHHHHHHH
Confidence 8887754321 112221 178999999999988999999999999999
Q ss_pred HHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEE
Q 039210 362 ISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQ 409 (612)
Q Consensus 362 L~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~ 409 (612)
| +||||++|++.|.++. +.++|.. ++ ...|++++.+.
T Consensus 107 l--~l~Del~lT~i~~~~~---Gd~~Fp~-----~~-~~~~~l~~~~~ 143 (162)
T 3dfr_A 107 K--DDVDTLLVTRLAGSFE---GDTKMIP-----LN-WDDFTKVSSRT 143 (162)
T ss_dssp G--GGCCEEEEEEESSCCC---CSEECCC-----CC-GGGEEEEEEEE
T ss_pred H--hhCCEEEEEEeccccc---ccCcCCC-----CC-hhHcEEEEEEc
Confidence 9 4999999988888883 3455543 23 24688887766
No 36
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=99.38 E-value=1.1e-12 Score=128.68 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=100.4
Q ss_pred cCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc---------cCeEEeccceEeccCC
Q 039210 196 SRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR---------SDAVVVGGNTVRRDNP 266 (612)
Q Consensus 196 ~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~---------~DailvG~~T~~~d~p 266 (612)
++.|-|++.+|+|+| |+|+. +|+..|. -+++.+++.++... .++|||||+|++.-.+
T Consensus 2 ~~~~~i~livA~s~d------------g~IG~-~g~lpW~-l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~ 67 (206)
T 3nzb_X 2 NQQKSLTLIVALTTS------------YGIGR-SNSLPWK-LKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPL 67 (206)
T ss_dssp CCCSCEEEEEEEETT------------CEEEB-TTBCSSC-CHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCG
T ss_pred CCCCEEEEEEEECCC------------CcEeC-CCCcCCC-ChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhh
Confidence 356779999999999 99976 8999996 45677777777766 4999999999975421
Q ss_pred CcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc--
Q 039210 267 RLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-- 344 (612)
Q Consensus 267 ~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-- 344 (612)
+.+.-..-..||+|++....+. ..++|+ -|+.++++.|++.
T Consensus 68 ----~~~Pl~~r~niVlSr~~~~~~~--------~~~~v~-------------------------~sl~eal~~l~~~~~ 110 (206)
T 3nzb_X 68 ----QFRPLKGRINVVITRNESLDLG--------NGIHSA-------------------------KSLDHALELLYRTYG 110 (206)
T ss_dssp ----GGCSCTTSEEEEECSSCCCCCC--------SSCEEE-------------------------SSHHHHHHHHHHHSC
T ss_pred ----cccCCCCCeEEEEccCCCCCCC--------CCEEEE-------------------------CCHHHHHHHHhcccc
Confidence 1011122346888887543211 011111 1789999999986
Q ss_pred -----CCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEec
Q 039210 345 -----GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIG 380 (612)
Q Consensus 345 -----g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG 380 (612)
++++|+|.||++|..+||+++|+||++|++.|..+.
T Consensus 111 ~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~ 151 (206)
T 3nzb_X 111 SESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIH 151 (206)
T ss_dssp SSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCC
T ss_pred ccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccC
Confidence 578999999999999999999999999999998874
No 37
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=99.36 E-value=1.6e-12 Score=122.65 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=88.8
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+|+. +|+..|.. +++..++.++.. .+++||||+|++.- ..+.+.......
T Consensus 2 i~~i~A~s~d------------G~Ig~-~g~lpW~~-~~d~~~f~~~t~-~~~viMGRkTyes~----~~~~~pl~~r~~ 62 (159)
T 1df7_A 2 VGLIWAQATS------------GVIGR-GGDIPWRL-PEDQAHFREITM-GHTIVMGRRTWDSL----PAKVRPLPGRRN 62 (159)
T ss_dssp EEEEEEEETT------------SEEEB-TTBCSSCC-HHHHHHHHHHHT-TSEEEEEHHHHHHS----CGGGSSCTTSEE
T ss_pred EEEEEEECCC------------CcEeC-CCCcCCCC-hHHHHHHHHHHC-CCEEEEeChHHhhc----ccccCCCCcCEE
Confidence 6889999999 99954 88889974 445556555444 47999999999743 211111223356
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++....++ ++.++ . |+.++++ .++|+|.||+++.++
T Consensus 63 iVlS~~~~~~~~------------------------------~~~~~---~-~~~~~l~------~~~i~viGG~~l~~~ 102 (159)
T 1df7_A 63 VVLSRQADFMAS------------------------------GAEVV---G-SLEEALT------SPETWVIGGGQVYAL 102 (159)
T ss_dssp EEECSSTTCCCT------------------------------TSEEE---S-SHHHHTT------SSSEEECCCHHHHHH
T ss_pred EEEeCCCCcCCC------------------------------CEEEE---C-CHHHHhc------CCcEEEECcHHHHHH
Confidence 888877432110 11111 1 5667765 678999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcc
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVS 389 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~ 389 (612)
||+ ||||++|++.|+++|+..+.++|.
T Consensus 103 ~l~--lvDel~lt~ip~~~G~~~Gd~~Fp 129 (159)
T 1df7_A 103 ALP--YATRCEVTEVDIGLPREAGDALAP 129 (159)
T ss_dssp HGG--GCSEEEEEEECCCCCCCTTCEECC
T ss_pred HHH--HCCEEEEEEEeeecCCCCccEeCC
Confidence 998 999999999999998322445554
No 38
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=99.36 E-value=4.2e-12 Score=120.30 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=101.4
Q ss_pred ceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCe
Q 039210 200 FSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPM 279 (612)
Q Consensus 200 ~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~ 279 (612)
-|++.+|+|+| |+|+ .+|+..|. -+++..++.++.. .++|||||+|++.-. + + -..-.
T Consensus 5 ~i~li~A~s~d------------g~Ig-~~g~lpW~-~~~D~~~F~~~t~-~~~vIMGRkTyesi~-----~-p-lp~r~ 62 (165)
T 3s9u_A 5 RVSFMVAMDEN------------RVIG-KDNNLPWR-LPSELQYVKKTTM-GHPLIMGRKNYEAIG-----R-P-LPGRR 62 (165)
T ss_dssp EEEEEEEEETT------------CEEE-BTTBCSCC-CHHHHHHHHHHHT-TSCEEEEHHHHHHHC-----S-C-CTTSC
T ss_pred EEEEEEEECCC------------CcEE-CCCCcCCC-CHhHHHHHHHhhc-CCEEEEcchHHhhhh-----h-c-cCCCe
Confidence 58899999999 9996 58999995 4456655555433 499999999997531 1 1 11123
Q ss_pred EEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHH
Q 039210 280 RIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAA 359 (612)
Q Consensus 280 ~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~ 359 (612)
.||+|++...+. .|+.++ -++.++++.|++. ++|+|.||+++..
T Consensus 63 ~iVlSr~~~~~~------------------------------~~v~v~----~~~~~al~~l~~~--~~i~viGG~~iy~ 106 (165)
T 3s9u_A 63 NIIVTRNEGYHV------------------------------EGCEVA----HSVEEVFELCKNE--EEIFIFGGAQIYD 106 (165)
T ss_dssp EEEECSCTTCCC------------------------------TTCEEE----SSHHHHHHHTTTC--SEEEECCCHHHHH
T ss_pred EEEECCCCccCC------------------------------CCEEEE----CCHHHHHHHhhcC--CCEEEECCHHHHH
Confidence 477777653211 122221 1788999988765 6999999999999
Q ss_pred HHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC
Q 039210 360 SAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG 411 (612)
Q Consensus 360 sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g 411 (612)
+|| +++||++|++.|+.+.| .++|.. ++. ..|++++.+.+.
T Consensus 107 ~~l--~l~Del~lT~ip~~~~G---d~~Fp~-----~~~-~~~~l~~~~~~~ 147 (165)
T 3s9u_A 107 LFL--PYVDKLYITKIHHAFEG---DTFFPE-----MDM-TNWKEVFVEKGL 147 (165)
T ss_dssp HHG--GGCCEEEEEEESSCCCC---SEECCC-----CCC-TTEEEEEEEECC
T ss_pred HHH--hhCCEEEEEEccccccC---CCcCCC-----CCh-HHCEEEEEEecc
Confidence 999 79999999999999932 445533 332 378888887764
No 39
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=99.34 E-value=8.9e-12 Score=127.04 Aligned_cols=164 Identities=11% Similarity=0.116 Sum_probs=112.5
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------------------------------
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------------------------------ 250 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------------------------------ 250 (612)
..+-+|+|.| |.|. .+|..-|-.-+++.+++.++-..
T Consensus 28 ~~~i~a~~~n------------~~IG-~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f 94 (280)
T 1j3k_A 28 KNEVFNNYTF------------RGLG-NKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPN 94 (280)
T ss_dssp GGCCCCGGGE------------EEEE-BTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC---------
T ss_pred EEEEEEecCC------------ceec-cCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhh
Confidence 4455678999 8884 58888892236666666665542
Q ss_pred ----cCeEEeccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEE
Q 039210 251 ----SDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV 326 (612)
Q Consensus 251 ----~DailvG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~v 326 (612)
.++|||||+|++.-. .+.+.-.....||++++..... . . .++.+
T Consensus 95 ~~~ig~~VIMGRkTyEsip----~~~~PLp~R~nIVlSr~~~~~~---~----~---------------------~~v~v 142 (280)
T 1j3k_A 95 SKKLQNVVVMGRTNWESIP----KKFKPLSNRINVILSRTLKKED---F----D---------------------EDVYI 142 (280)
T ss_dssp -CCCCCEEEEEHHHHHHSC----GGGCSCTTSEEEEECSSCCGGG---C----C---------------------SSCEE
T ss_pred ccccCCEEEEcchHhhhhc----ccccCcCCCeEEEEeCCCcccc---C----C---------------------CCEEE
Confidence 599999999997542 1111122345678887643110 0 0 12222
Q ss_pred EEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeee
Q 039210 327 VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406 (612)
Q Consensus 327 i~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~ 406 (612)
+ . ++.++++.|++.+.++|+|.||++|..+||++|||||++|++.|+++|| .++|.. ++ ...|++++
T Consensus 143 v---~-sl~eal~~lk~~~~~~I~ViGGa~ly~~~L~~glvDel~LT~Ip~~lgG---D~~FP~-----~d-~~~~~lv~ 209 (280)
T 1j3k_A 143 I---N-KVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYEC---DVFFPE-----IN-ENEYQIIS 209 (280)
T ss_dssp E---S-SHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEECC---SEECCC-----CC-TTTEEEEE
T ss_pred E---C-CHHHHHHHHHhCCCCcEEEECCHHHHHHHhcCccCCEEEEEEeccccCC---ceeCCC-----CC-hhhcEEEE
Confidence 1 1 7899999999988899999999999999999999999999999999994 334433 22 35688887
Q ss_pred EEE-eC-CC--eEEEEEecC
Q 039210 407 YEQ-VG-PD--MLISGFLQP 422 (612)
Q Consensus 407 ~~~-~g-~d--vv~~~y~~~ 422 (612)
.+. +. ++ ..++.|.+.
T Consensus 210 ~~~~~~~~g~~~~f~~Y~R~ 229 (280)
T 1j3k_A 210 VSDVYTSNNTTLDFIIYKKT 229 (280)
T ss_dssp ECCCEEETTEEEEEEEEEEC
T ss_pred EEeeccCCCceEEEEEEEEC
Confidence 765 44 45 566778765
No 40
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=99.34 E-value=1e-11 Score=118.91 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=106.0
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+|+ .+|+..|.- +++..++.++.. .++|||||+|++.-. + + -+.-..
T Consensus 3 i~li~A~s~d------------g~IG-~~g~lpW~l-p~Dl~~Fk~~T~-g~~vIMGRkTyesi~-----~-p-lp~R~n 60 (178)
T 3tq8_A 3 ITLIAAMDKN------------RLIG-RNNELPWHL-PADLAHFKSITL-GKPIVMGRRTFDSIG-----K-P-LPHRRN 60 (178)
T ss_dssp EEEEEEEETT------------CEEE-BTTBCSSCC-HHHHHHHHHHHT-TSEEEEEHHHHHHHC-----S-C-CTTSEE
T ss_pred EEEEEEECCC------------CcEE-CCCCcCCcC-HHHHHHHHHhhc-CCEEEEechHHhhhh-----h-c-cCCCeE
Confidence 7888999999 9996 689999964 456666555543 499999999997531 1 1 112235
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++...+. .|+.++ -++.++++.|++ .++|+|.||+++..+
T Consensus 61 iVlSr~~~~~~------------------------------~~v~v~----~sl~eal~~l~~--~~~i~viGG~~iy~~ 104 (178)
T 3tq8_A 61 IVITQQKNLII------------------------------EGCDIF----YSLDDALSALTK--EPEVIIIGGARIFKE 104 (178)
T ss_dssp EEECSCTTCCC------------------------------TTSEEE----SSHHHHHHHTTT--CSEEEEEECHHHHHH
T ss_pred EEEcCCCCcCC------------------------------CCeEEE----CCHHHHHHHhhC--CCCEEEECCHHHHHH
Confidence 78887753221 122221 168899988876 579999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC----C--CeEEEEEecC
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG----P--DMLISGFLQP 422 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g----~--dvv~~~y~~~ 422 (612)
||. ++||++|++.|+.++| .++|.. ++. ..|++++.+.+. + +.....|.+.
T Consensus 105 ~l~--l~Del~lT~i~~~~~G---d~~Fp~-----~~~-~~w~l~~~~~~~~~~~~~~~~~f~~y~r~ 161 (178)
T 3tq8_A 105 ALP--KADKMILTIINHSFEG---DVYFPE-----WND-KEWKITSQIKHERDEKNPYPFQFLELRRL 161 (178)
T ss_dssp HGG--GCSEEEEEEESSCCCC---SEECCC-----CCT-TSEEEEEEEEECCC--CCSCEEEEEEEEC
T ss_pred HHH--hCCEEEEEEccccccc---cCcCCC-----CCh-HHCEEEEEEeccccccCCccEEEEEEEEC
Confidence 997 9999999999999953 345533 332 478888887764 2 3455555543
No 41
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=99.32 E-value=1.1e-11 Score=117.03 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=99.1
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|++.+|+|+| |+| +.+|+..|.- +++..++.++. ..++|||||+|++.-. + + -+.-..
T Consensus 3 i~li~A~s~d------------g~I-G~~g~lpW~~-~~D~~~Fk~~t-~g~~vIMGRkTyesi~-----~-p-lp~r~~ 60 (162)
T 3ia4_A 3 VSMIAALANN------------RVI-GLDNKMPWHL-PAELQLFKRAT-LGKPIVMGRNTFESIG-----R-P-LPGRLN 60 (162)
T ss_dssp EEEEEEECGG------------GEE-EBTTBCSSCC-HHHHHHHHHHH-TTSCEEEEHHHHHHHC-----S-C-CTTSCE
T ss_pred EEEEEEECCC------------CcE-ECCCCcCCCC-HhHHHHHHHHh-cCcEEEEEchHHhhhh-----h-h-cCCCeE
Confidence 7888999999 999 5799999964 45655555443 3489999999997532 1 1 112235
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++..... .|+.++ -++.++++.|++ .++|+|.||+++..+
T Consensus 61 iVlSr~~~~~~------------------------------~~~~v~----~s~~~al~~l~~--~~~i~viGG~~iy~~ 104 (162)
T 3ia4_A 61 IVLSRQTDYQP------------------------------EGVTVV----ATLEDAVVAAGD--VEELMIIGGATIYNQ 104 (162)
T ss_dssp EEECCCTTCCC------------------------------TTSEEE----SSHHHHHHHHTT--CSEEEECCCHHHHHH
T ss_pred EEEcCCCCCCC------------------------------CCeEEE----CCHHHHHHHhhC--CCCEEEECCHHHHHH
Confidence 78887754221 112211 168899988876 579999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeC
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVG 411 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g 411 (612)
||. |+||++|++.|+.+.| .++|. .++ ...|++++.+...
T Consensus 105 ~l~--l~Del~lT~i~~~~~g---d~~Fp-----~~~-~~~w~~~~~~~~~ 144 (162)
T 3ia4_A 105 CLA--AADRLYLTHIELTTEG---DTWFP-----DYE-QYNWQEIEHESYA 144 (162)
T ss_dssp HGG--GCSEEEEEEECCCCCC---SEECC-----CGG-GSCEEEEEEEEEC
T ss_pred HHH--hCCEEEEEEccccccc---cccCC-----CCC-hHHCEEEEEEecc
Confidence 996 9999999999999843 34443 332 2468888777653
No 42
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=99.26 E-value=1.5e-11 Score=134.61 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=101.0
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------------cCeEEeccceEecc
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------------SDAVVVGGNTVRRD 264 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------------~DailvG~~T~~~d 264 (612)
..+-|++.+|+|+| |+| +++|+..|..-+++..++.++... .|+|||||+|++.-
T Consensus 11 ~MrkI~livA~Sld------------G~I-G~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESi 77 (515)
T 3nrr_A 11 GCGDLTIFVAVALN------------KVI-GHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESI 77 (515)
T ss_dssp TCCCEEEEEEECTT------------SEE-EBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTS
T ss_pred CCceEEEEEEECCC------------CcC-CCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhh
Confidence 35669999999999 999 899999997566777777777654 59999999999753
Q ss_pred CCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc
Q 039210 265 NPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR 344 (612)
Q Consensus 265 ~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~ 344 (612)
... .| .-..-..||+|++...+ + .++|+ -|+.++++.|++.
T Consensus 78 p~~--~r--PLp~R~nIVlSrt~~~~---------~-~v~V~-------------------------~sl~eal~~Lk~~ 118 (515)
T 3nrr_A 78 PKA--SL--PLKNRINVILSRTVKEV---------P-GCLVY-------------------------EDLSTAIRDLRAN 118 (515)
T ss_dssp CGG--GC--SCTTEEEEEECSSCCCC---------T-TEEEE-------------------------SSHHHHHHHHHHH
T ss_pred hhc--cC--CCCCCeEEEECCCCCCC---------C-CEEEE-------------------------CCHHHHHHHHhhc
Confidence 210 01 11122468888775311 0 12221 1789999999987
Q ss_pred -CCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecC
Q 039210 345 -GYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381 (612)
Q Consensus 345 -g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~ 381 (612)
+.++|+|.||++|..+||+++||||++|++.|..+.+
T Consensus 119 ~~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~G 156 (515)
T 3nrr_A 119 VPHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPG 156 (515)
T ss_dssp SCCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCC
T ss_pred cCCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCC
Confidence 8899999999999999999999999999999988843
No 43
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=99.20 E-value=1.2e-11 Score=135.57 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=103.9
Q ss_pred CccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------cCeEEeccceEeccCCCccc
Q 039210 197 RVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------SDAVVVGGNTVRRDNPRLTA 270 (612)
Q Consensus 197 ~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~L~~ 270 (612)
.+|-|++.+|+|+| |+| +.+|+..|. -+++..++.++... .|+|||||+|++.-. .
T Consensus 3 ~MrkI~lIvA~Sld------------G~I-G~dg~LpW~-lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig----~ 64 (521)
T 3hj3_A 3 EKNVSIVVAASVLS------------SGI-GINGQLPWS-ISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG----R 64 (521)
T ss_dssp CCCEEEEEEEETTT------------CEE-EBTTBCSCC-CHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT----T
T ss_pred CCceEEEEEEECCC------------CcE-ECCCCCCCC-CHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC----c
Confidence 35779999999999 999 468889996 35666666666544 389999999997541 1
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHc-CCCeE
Q 039210 271 RHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDR-GYLSI 349 (612)
Q Consensus 271 r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~-g~~~I 349 (612)
+.-..-..||+|++...... .+.+++.+ ++.++++.|++. |.++|
T Consensus 65 --~PLp~R~nIVlSrt~~~~~~--------~~~~~V~~------------------------sl~eal~~lk~~~g~~~I 110 (521)
T 3hj3_A 65 --RPLKNRIIVVISSSLPQDEA--------DPNVVVFR------------------------NLEDSIENLMNDDSIENI 110 (521)
T ss_dssp --CCCTTSEEEEECSSSCCCCS--------CSSEEEES------------------------STTTTTTSSSSCTTEEEE
T ss_pred --ccCCCCeEEEEcCCCcccCC--------CCCEEEEC------------------------CHHHHHHHHhhccCCCCE
Confidence 11122346899988653110 11122221 566778888876 56899
Q ss_pred EEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeE
Q 039210 350 LWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICY 407 (612)
Q Consensus 350 lveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~ 407 (612)
+|.||++|..+||+++||||++|++.|++.+. +.++|. .++.. |++++.
T Consensus 111 ~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~--GDtfFP-----~~d~~--w~lv~~ 159 (521)
T 3hj3_A 111 FVCGGESIYRDALKDNFVDRIYLTRVALEDIE--FDTYFP-----EIPET--FLPVYM 159 (521)
T ss_dssp EEEECHHHHHHHHHTTCCSEEEEEEECCCSSC--CSEECC-----CCCTT--EEEEEE
T ss_pred EEEeCHHHHHHHhcCCCCCEEEEEEEeccCcC--cCccCC-----CCCCC--cEEEEe
Confidence 99999999999999999999999999994443 234443 33333 666553
No 44
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=99.19 E-value=5.6e-11 Score=111.82 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=96.6
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCCCCCeE
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMR 280 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~~~P~~ 280 (612)
|.+.+|+|+| |.|+ .+|+..|. -+++.+++.++.. .++|||||+|++.-. + + -+.-..
T Consensus 2 i~li~A~s~~------------g~IG-~~g~lpW~-l~~D~~~Fk~~t~-~~~vIMGRkT~esi~-----~-p-lp~r~~ 59 (159)
T 3dau_A 2 ISLIAALAVD------------RVIG-MENAMPWN-LPADLAWFKRNTL-NKPVIMGRHTWESIG-----R-P-LPGRKN 59 (159)
T ss_dssp EEEEEEECGG------------GEEE-BTTBCSSC-CHHHHHHHHHHHT-TSCEEEEHHHHHHHC-----S-C-CTTSCE
T ss_pred EEEEEEECCC------------CeEE-CCCCcCcC-ChhHHHHHHHHhc-CCeEEEechHHhhcc-----c-c-cCCCEE
Confidence 6788999999 9996 68999995 3556666555533 479999999997531 1 1 112235
Q ss_pred EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHH
Q 039210 281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAAS 360 (612)
Q Consensus 281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~s 360 (612)
||+|++. .+. .|+.++ -++.++++.++ +.++|+|.||+++..+
T Consensus 60 iVlSr~~-~~~------------------------------~~~~v~----~s~~~al~~~~--~~~~i~iiGG~~iy~~ 102 (159)
T 3dau_A 60 IILSSQP-GTD------------------------------DRVTWV----KSVDEAIAACG--DVPEIMVIGGGRVYEQ 102 (159)
T ss_dssp EEECSSC-CSC------------------------------TTSEEE----SSHHHHHHTTC--SCSCEEECCCHHHHHH
T ss_pred EEECCCC-CCC------------------------------CCeEEE----CCHHHHHHHhc--CCCCEEEECCHHHHHH
Confidence 6777764 211 112211 16778887664 6789999999999999
Q ss_pred HHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEe
Q 039210 361 AISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQV 410 (612)
Q Consensus 361 fL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~ 410 (612)
||. ++||++|++.|+.+|| .++|.. ++ ...|++++.+..
T Consensus 103 ~l~--~~D~l~lT~i~~~~~G---d~~Fp~-----~~-~~~~~~~~~~~~ 141 (159)
T 3dau_A 103 FLP--KAQKLYLTHIDAEVEG---DTHFPD-----YE-PDDWESVFSEFH 141 (159)
T ss_dssp HGG--GCSEEEEEEECCCCCC---SEECCC-----CC-GGGEEEEEEEEE
T ss_pred HHh--hCCEEEEEEcccccCc---cccCCC-----CC-hHHCEEEEEEec
Confidence 996 9999999999999984 344533 22 246777776655
No 45
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=99.17 E-value=1.5e-10 Score=115.59 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=102.0
Q ss_pred eeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc--------------------------------
Q 039210 203 FKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR-------------------------------- 250 (612)
Q Consensus 203 ~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~-------------------------------- 250 (612)
.-.|.+.+ |-| +.+|..-|-.-+++.+++.++-..
T Consensus 29 ~~~~~~~~------------~~I-G~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
T 2bl9_A 29 EPFSPRTF------------RGL-GNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGG 95 (238)
T ss_dssp CTTCSCSS------------CEE-EBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC-----------
T ss_pred EEEEecCC------------Cee-cCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccc
Confidence 34457778 777 678888894457777777776542
Q ss_pred ------------cCeEEeccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHH
Q 039210 251 ------------SDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKY 318 (612)
Q Consensus 251 ------------~DailvG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~ 318 (612)
.++|||||+|++.-. .+++.-.....||++++..... . .
T Consensus 96 ~~~g~~~f~~~~g~~VIMGRkTyEsi~----~~~~PLp~R~nIVlSr~~~~~~---~----~------------------ 146 (238)
T 2bl9_A 96 DNTHGGDNADKLQNVVVMGRSSWESIP----KQYKPLPNRINVVLSKTLTKED---V----K------------------ 146 (238)
T ss_dssp ----------CCCEEEEEEHHHHHTSC----GGGCSCTTEEEEEECSSCCTTT---C----C------------------
T ss_pred ccccccccccccCCEEEEchhHhhhhc----ccccCcCCCEEEEEeCCCcccc---C----C------------------
Confidence 489999999997532 1111112335678887643210 0 0
Q ss_pred HHhCCcEEEEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCccccccccccc
Q 039210 319 LASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQ 398 (612)
Q Consensus 319 l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~ 398 (612)
.++.++ . ++.++++.|++.+.++|+|.||++|..+||++||+||++|++.|+.+|| .++|.. ++
T Consensus 147 ---~~v~v~---~-sl~eal~~lk~~~~~~I~ViGGa~Iy~~~L~~glvDel~lT~ip~~~gG---D~~FP~-----~d- 210 (238)
T 2bl9_A 147 ---EKVFII---D-SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPC---DVFFPE-----FD- 210 (238)
T ss_dssp ---SSCEEE---S-CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECC---SEECCC-----CC-
T ss_pred ---CCEEEE---C-CHHHHHHHHHhCCCCCEEEECcHHHHHHHhcccCCCEEEEEEeccccCC---ceeCCC-----CC-
Confidence 112221 1 7889999999888899999999999999999999999999999999995 234433 22
Q ss_pred ccCcEeeeEE
Q 039210 399 ALDLIDICYE 408 (612)
Q Consensus 399 ~~~L~l~~~~ 408 (612)
...|++++.+
T Consensus 211 ~~~~~lv~~~ 220 (238)
T 2bl9_A 211 ESEFRVTSVS 220 (238)
T ss_dssp GGGEEEEEEC
T ss_pred chhcEEEEEE
Confidence 3457666553
No 46
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.10 E-value=2.9e-10 Score=104.22 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---c-CCCCCcEEEEc--
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---G-SFCRGATAYLN-- 114 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~-~~~~g~tlYvT-- 114 (612)
++.+|+.|++.|+++... ..+.||||+|+++||+|+ +|+|... .+.|||+.||.+| | ..+..+++|++
T Consensus 3 ~~~l~~~A~~aa~~ayap-Ys~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 3 RQELITEALKARDMAYAP-YSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADTP 80 (136)
T ss_dssp HHHHHHHHHHHHTTCBCT-TTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhccCc-cCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEeCCC
Confidence 677999999999987542 236799999998899999 7999653 5799999999998 2 45789999995
Q ss_pred --CCCCCCCCchhHHHHHHHhCCC--EEEEEe
Q 039210 115 --MEPGDCHGDHTAVSALVQAGIT--RVVVGI 142 (612)
Q Consensus 115 --lEPC~~~g~~~C~~ai~~agI~--rVv~~~ 142 (612)
++|| .+|.++|.+.+=. +|++..
T Consensus 81 ~~~~PC-----g~Crq~l~e~~~~~~~v~~~~ 107 (136)
T 1uwz_A 81 GPVSPC-----GACRQVISELCTKDVIVVLTN 107 (136)
T ss_dssp SSCCCC-----HHHHHHHHHHSCTTCEEEEEC
T ss_pred CccCHH-----HHHHHHHHHcCCCCcEEEEEC
Confidence 9999 3699999998732 444443
No 47
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.08 E-value=4.1e-10 Score=104.23 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=72.8
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---c-CCCCCc
Q 039210 38 CKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---G-SFCRGA 109 (612)
Q Consensus 38 ~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~-~~~~g~ 109 (612)
+.++...++.+|++|++.++++... ..+.+|||+|+++||+|+ +|.|... .+.|||++||.+| | ..+..+
T Consensus 8 ~~~~~~~~~~L~~~A~~a~~~ayap-ys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i 85 (146)
T 2fr5_A 8 CAVEPEHVQRLLLSSREAKKSAYCP-YSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAI 85 (146)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCBCT-TTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCC-cCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEE
Confidence 4566777889999999999987532 247899999999999999 6999653 4799999999998 2 356788
Q ss_pred EEEEc-----CCCCCCCCchhHHHHHHHhC
Q 039210 110 TAYLN-----MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 110 tlYvT-----lEPC~~~g~~~C~~ai~~ag 134 (612)
++|++ ++|| .+|.++|.+.+
T Consensus 86 ~v~~~~~~~~~~PC-----G~Crq~l~E~~ 110 (146)
T 2fr5_A 86 AISSDLQEEFISPC-----GACRQVMREFG 110 (146)
T ss_dssp EEEESCSSSCCCCC-----HHHHHHHHHTC
T ss_pred EEEeCCCCcccCCC-----HHHHHHHHHhC
Confidence 99998 9999 35999999987
No 48
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.01 E-value=1.5e-09 Score=98.75 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC--CCCChHHHHHHHHc---c-CCCCCcEEEE--
Q 039210 42 RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA--QGTKPAEVQAVEAG---G-SFCRGATAYL-- 113 (612)
Q Consensus 42 ~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~--~~~~HAE~~Ai~~a---~-~~~~g~tlYv-- 113 (612)
+..|+.+|+.|+++++++... .+.+|||+|+++||+|+ +|.|.. ..+.|||+.||.+| | ..++..++|+
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~--s~f~VGAal~~~dG~i~-~G~NvE~~~~t~cAE~~Ai~~A~~~G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPIS--EDYSVASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNE 80 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCC--SSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHhhCCC--CCCCEEEEEEecCCeEE-EEeccccCCcccCHHHHHHHHHHHcCCCceEEEEEEECC
Confidence 346788999999999998543 56899999999999999 599976 45899999999998 2 4567888998
Q ss_pred ---cCCCCCCCCchhHHHHHHHhCC
Q 039210 114 ---NMEPGDCHGDHTAVSALVQAGI 135 (612)
Q Consensus 114 ---TlEPC~~~g~~~C~~ai~~agI 135 (612)
+++|| .+|.+.|.+.+-
T Consensus 81 ~~~~~~PC-----G~Crq~l~e~~~ 100 (130)
T 2z3g_A 81 NRGILSPC-----GRCRQVLLDLHP 100 (130)
T ss_dssp TTEEECCC-----HHHHHHHHHHCT
T ss_pred CCCccCcC-----HHHHHHHHHhCC
Confidence 78999 369999999873
No 49
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=98.97 E-value=3.4e-10 Score=113.25 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=98.5
Q ss_pred ccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhcc------------CeEEeccceEe
Q 039210 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRS------------DAVVVGGNTVR 262 (612)
Q Consensus 195 ~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~------------DailvG~~T~~ 262 (612)
....+-|++.+|+|.| |.| +.+|+..|. -+++.+++.++-... ++|||||+|++
T Consensus 23 ~~~mr~i~lIvA~s~n------------g~I-G~~g~LPW~-lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~E 88 (240)
T 3rg9_A 23 RPPLRPFSVVVASDEK------------GGI-GDGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWD 88 (240)
T ss_dssp CCCCCCEEEEEEEETT------------CEE-ESSSSCSCC-CHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHH
T ss_pred CCCCCeEEEEEEECCC------------CcE-ECCCCcCCC-CHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHh
Confidence 3455678999999999 999 579999996 567777877776664 89999999997
Q ss_pred ccCCCcccCCCCCCCCeEEEEcCCCCCC-CCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHH
Q 039210 263 RDNPRLTARHGGGHTPMRIVLTQTLNLP-EEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYF 341 (612)
Q Consensus 263 ~d~p~L~~r~~~~~~P~~vVvd~~~~l~-~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L 341 (612)
.-.+.+ | .-..-..||+|++.... +...+ . ...........++.+ .-++.++++.|
T Consensus 89 Sip~~~--r--PLp~R~nIVlSr~~~~~~~~~~~---~------------~~~~~~~~~~~~v~v----~~sl~eal~~l 145 (240)
T 3rg9_A 89 SLPPKF--R--PLSNRLNVVLSRSATKEQLLAGI---P------------DPIKRAEAANDVVAV----NGGLEDALRML 145 (240)
T ss_dssp HSCGGG--S--SCTTSEEEEECSSCCHHHHHTTC---S------------SHHHHHHHGGGEEEE----SSCHHHHHHHT
T ss_pred hhhhhc--c--CCCCCeEEEEccCcccccccccc---c------------ccccccccCCCCEEE----ECCHHHHHHHH
Confidence 532110 1 11223467888775321 00000 0 000000000112211 12788999988
Q ss_pred HHcC----CCeEEEeecHHHHHHHHHcC---CCcEEEEEEee-EEec
Q 039210 342 HDRG----YLSILWECGGTLAASAISSG---LIHKVFAFVAP-KIIG 380 (612)
Q Consensus 342 ~~~g----~~~IlveGG~~L~~sfL~~g---LVDEi~l~iaP-~ilG 380 (612)
++.+ +++|+|.||+++..+||+++ ++|+++|+..| ..+.
T Consensus 146 ~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~l~lT~I~p~~~e 192 (240)
T 3rg9_A 146 VSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNS 192 (240)
T ss_dssp TSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEEEEEEEEESCCSS
T ss_pred hccccccCCCeEEEECCHHHHHHHHhcCccccCCEEEEEEEcCCCcC
Confidence 7654 78999999999999999999 99999999877 7664
No 50
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=98.96 E-value=1.9e-10 Score=111.79 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=89.7
Q ss_pred eeeeeeccc--------cccccccccccccCceecCCCCccc-CCChhHHHHHHHHhhccCeEEeccceEeccCCCcccC
Q 039210 201 SVFKYAMTL--------DVILPGVLSWMLTGKIAASSGHAAW-ISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR 271 (612)
Q Consensus 201 Vi~k~A~SL--------D~~~~~~~~~~~~G~ia~~~g~~~w-it~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r 271 (612)
|++.+|+|+ | |.|. .+|+..| .- +++.+++.++.. .++|||||+||+.-...|.
T Consensus 2 i~li~A~s~~~~~~~~~d------------g~IG-~~g~lpW~~l-~~D~~~F~~~t~-~~~vIMGRkTyesi~~plp-- 64 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNE------------LAFG-LGDGLPWGRV-KKDLQNFKARTE-GTIMIMGAKTFQSLPTLLP-- 64 (193)
T ss_dssp EEEEEEEEEEECTTSCEE------------EEEE-BTTBCTTCCC-HHHHHHHHHHHT-TSEEEEEHHHHHTCSSCCT--
T ss_pred EEEEEEEcCccccCCCcC------------CeEC-CCCCCCCcCC-hHHHHHHHHHhc-CCEEEEchhHhhhcccccC--
Confidence 678899999 9 9995 6898999 42 455555555443 5999999999975321121
Q ss_pred CCCCCCCeEEEEcCCCC-CCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHHHcCCCeEE
Q 039210 272 HGGGHTPMRIVLTQTLN-LPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSIL 350 (612)
Q Consensus 272 ~~~~~~P~~vVvd~~~~-l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~~~g~~~Il 350 (612)
.-..||+|++.+ .+... .. . .+.++.+- .+... +...+.-+. . ++.++++.|++ +.++|+
T Consensus 65 -----~R~~iVlSr~~~~~~~~~---~~-~-~~~~~~~~---~~a~~-~~~~~~~v~--~--sl~eal~~lk~-~~~~I~ 125 (193)
T 1juv_A 65 -----GRSHIVVCDLARDYPVTK---DG-D-LAHFYITW---EQYIT-YISGGEIQV--S--SPNAPFETMLD-QNSKVS 125 (193)
T ss_dssp -----TSCEEEECCTTSCCCCCT---TC-C-CCSEEECH---HHHHH-HHTTCCEEE--E--CTTSSCEEEEC-TTSCEE
T ss_pred -----CCcEEEEcCCCccccccc---cc-c-cceeeccc---ccccc-cccccceec--C--CHHHHHHHHHc-CCCcEE
Confidence 224688887752 21100 00 0 00000000 00000 001111111 1 44556666654 678999
Q ss_pred EeecHHHHHHHHHcCCCcEEEEEEee-EEecCCCCCCCcc
Q 039210 351 WECGGTLAASAISSGLIHKVFAFVAP-KIIGGKNAPTPVS 389 (612)
Q Consensus 351 veGG~~L~~sfL~~gLVDEi~l~iaP-~ilG~~~~~~~f~ 389 (612)
|.||+++..+|| +|+||++|++.| ...|+ +.++|.
T Consensus 126 ViGG~~ly~~~L--~lvDel~lT~ip~~~~~~--gd~~F~ 161 (193)
T 1juv_A 126 VIGGPALLYAAL--PYADEVVVSRIVKRHRVN--STVQLD 161 (193)
T ss_dssp EEECHHHHHHHG--GGCSEEEEEEEEESSCCC--CSEEEC
T ss_pred EECcHHHHHHHH--HhCCEEEEEEeccccccC--CCeecC
Confidence 999999999999 799999999999 67775 344554
No 51
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=98.47 E-value=1.8e-07 Score=102.66 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=97.7
Q ss_pred ccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------c------CeEEeccceEe
Q 039210 195 TSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------S------DAVVVGGNTVR 262 (612)
Q Consensus 195 ~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------~------DailvG~~T~~ 262 (612)
....|-|.+-+|+|.| |.|. .+|+.-| .-+++..++.++-.. . ++|||||+|++
T Consensus 17 ~~~~~~islIvA~~~n------------g~IG-~~g~LPW-~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~E 82 (521)
T 3irm_A 17 RLALRAFSLVVAVDEH------------GGIG-DGRSIPW-NVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWD 82 (521)
T ss_dssp SCSSCCEEEEEEEETT------------SEEE-SSSCCCC-CCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHH
T ss_pred ccCCceEEEEEEECCC------------Ccee-cCCCcCC-CChhHHHHHHHHhcCCCcccccCcccccceEEEecchhh
Confidence 4567889999999999 9995 7888899 466788888777655 2 79999999997
Q ss_pred ccCCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCHHHHHHHHH
Q 039210 263 RDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFH 342 (612)
Q Consensus 263 ~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl~~~l~~L~ 342 (612)
.-.+. .| .-..-..||+|++..... ...... +......-...++. . .-++.++++.|+
T Consensus 83 SIP~k--~r--PLP~R~NIVLSR~~~~~~---~~~~~p-----------~~~~~~~~~~~~v~--V--~~SleeAL~~l~ 140 (521)
T 3irm_A 83 SIPPK--FR--PLPGRLNVVLSSTLTTQH---LLDGLP-----------DEEKRNLHADSIVA--V--NGGLEQALRLLA 140 (521)
T ss_dssp TSCGG--GC--SCTTEEEEEECSSCCHHH---HHHTSS-----------SHHHHHHHGGGEEE--E--SSCHHHHHHHHT
T ss_pred Ccccc--cC--CCCCCeEEEEeccccccc---cccccc-----------ccccccccCCCCeE--E--ECCHHHHHHHHh
Confidence 43110 01 112234577877643210 000000 00000000111221 1 127889999998
Q ss_pred Hc----CCCeEEEeecHHHHHHHHHcC---CCcEEEEEEee-EEe
Q 039210 343 DR----GYLSILWECGGTLAASAISSG---LIHKVFAFVAP-KII 379 (612)
Q Consensus 343 ~~----g~~~IlveGG~~L~~sfL~~g---LVDEi~l~iaP-~il 379 (612)
+. ++++|+|.||+++..+||+++ ++|+++|+..| ...
T Consensus 141 ~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~l~lT~I~p~~~ 185 (521)
T 3irm_A 141 SPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASES 185 (521)
T ss_dssp STTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEEEEEEEECCSSC
T ss_pred ccccccCCCeEEEEcCHHHHHHHHhCCccccCCEEEEEEecCCCc
Confidence 76 478999999999999999999 99999999988 543
No 52
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=98.38 E-value=1.3e-06 Score=96.74 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=92.1
Q ss_pred eeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhc------------------------------
Q 039210 201 SVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGR------------------------------ 250 (612)
Q Consensus 201 Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~------------------------------ 250 (612)
+.+-.|++-+ |-|. .+|..-|-.-+++.+++.++-..
T Consensus 28 i~lIvA~~~n------------~gIG-~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 94 (608)
T 3qg2_A 28 KNEVFNNYTF------------RGLG-NKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPN 94 (608)
T ss_dssp CCCCCCGGGE------------EEEE-BTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC---------
T ss_pred EEEEEEeCCC------------Cccc-cCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCcccccc
Confidence 6667788888 7664 67888893346677776665541
Q ss_pred ----cCeEEeccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEE
Q 039210 251 ----SDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEV 326 (612)
Q Consensus 251 ----~DailvG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~v 326 (612)
-++|||||+|++.-... .|. -..-..||++++..... . . .++.+
T Consensus 95 ~~~~~~~VIMGRKTfESIp~~--frP--LPgR~NIVLSR~~~~~~----~---~---------------------~gv~V 142 (608)
T 3qg2_A 95 SKKLQNVVVMGRTNWESIPKK--FKP--LSNRINVILSRTLKKED----F---D---------------------EDVYI 142 (608)
T ss_dssp -CCCCEEEEEEHHHHHHSCGG--GCS--CTTEEEEEECSSCCGGG----C---C---------------------SSCEE
T ss_pred ccCcCCEEEEchHHHHhhccc--cCC--CCCCeEEEECCCCcccc----C---C---------------------CCEEE
Confidence 17999999999743210 011 11224578887743110 0 0 11111
Q ss_pred EEecCCCHHHHHHHHHHcCCCeEEEeecHHHHHHHHHcCCCcEEEEEEeeEEecC
Q 039210 327 VEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGG 381 (612)
Q Consensus 327 i~~~~~dl~~~l~~L~~~g~~~IlveGG~~L~~sfL~~gLVDEi~l~iaP~ilG~ 381 (612)
+ -++.++++.|++.+.++|+|.||+++..+||.++++|+++|+..|..+.+
T Consensus 143 ~----~sleeal~~lk~~~~~~IfVIGGa~IY~~~L~~~laDeL~LT~I~~~~eG 193 (608)
T 3qg2_A 143 I----NKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYEC 193 (608)
T ss_dssp E----SSHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEECC
T ss_pred E----CCHHHHHHHHhcCCCCeEEEECCHHHHHHHcccCCCCEEEEEEeCCccCC
Confidence 1 17889999999988899999999999999999999999999999999843
No 53
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.38 E-value=7.6e-07 Score=82.01 Aligned_cols=84 Identities=8% Similarity=-0.029 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cC-CCCCcEEEEc-
Q 039210 44 EDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GS-FCRGATAYLN- 114 (612)
Q Consensus 44 ~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~-~~~g~tlYvT- 114 (612)
.|+.+|+.|++.++++... ..+|||+|+++||+|+ +|+|-.. .+.|||..||.+| |. ......+|.+
T Consensus 3 ~~~~L~~~A~~a~~~ayaP---yS~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPN---DWGGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLAREN 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSS---SCEEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCC---CCCEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCCCcEEEEEEEecC
Confidence 4678999999999998643 2399999998999999 7999653 4689999999998 33 2345566653
Q ss_pred -------CCCCCCCCchhHHHHHHHhCCC
Q 039210 115 -------MEPGDCHGDHTAVSALVQAGIT 136 (612)
Q Consensus 115 -------lEPC~~~g~~~C~~ai~~agI~ 136 (612)
+-|| .+|.+.|.+.+-.
T Consensus 79 ~~~~~~~~sPC-----G~CRq~l~e~~~~ 102 (142)
T 3b8f_A 79 EHSELKVLSPC-----GVCQERLFYWGPE 102 (142)
T ss_dssp TTSCCEECCCC-----HHHHHHHGGGCTT
T ss_pred CCCCCCCCCcH-----HHHHHHHHHhCCC
Confidence 4599 3599999998743
No 54
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.37 E-value=1.7e-06 Score=79.69 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cC-C-CCCcE
Q 039210 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GS-F-CRGAT 110 (612)
Q Consensus 40 ~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~-~-~~g~t 110 (612)
|+..+++.+|+.|++.++++.. ...+.+|||+|+++||+|+ +|.|-.. .+.|||..||.+| |. . +...+
T Consensus 6 ~~~~~~~~L~~~A~~a~~~aya-PYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~ 83 (142)
T 1r5t_A 6 IEDRQLEALKRAALKACELSYS-PYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMV 83 (142)
T ss_dssp SCHHHHHHHHHHHHHHGGGCBC-TTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEE
T ss_pred cchhHHHHHHHHHHHHHHhcCC-CcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEE
Confidence 4445577899999999988753 2236799999998899988 5998542 5789999999988 33 3 77888
Q ss_pred EEEc----C-CCCCCCCchhHHHHHHHhCC--CEEEEEe
Q 039210 111 AYLN----M-EPGDCHGDHTAVSALVQAGI--TRVVVGI 142 (612)
Q Consensus 111 lYvT----l-EPC~~~g~~~C~~ai~~agI--~rVv~~~ 142 (612)
+|.. + .|| ..|-+.|.+.+- -+|++..
T Consensus 84 vv~~~~~~~~~PC-----G~CRq~l~e~~~~~~~v~~~~ 117 (142)
T 1r5t_A 84 ICGDSEDQCVSPC-----GVCRQFINEFVVKDFPIVMLN 117 (142)
T ss_dssp EEESCSSSCCCCC-----HHHHHHHHTTSCTTCEEEEEC
T ss_pred EEeCCCCcccCHH-----HHHHHHHHHhCCCCEEEEEEC
Confidence 8874 5 899 359999999762 2444443
No 55
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.34 E-value=1.4e-06 Score=79.57 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cCCCCCcEEE
Q 039210 40 FSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GSFCRGATAY 112 (612)
Q Consensus 40 ~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~~~~g~tlY 112 (612)
|...+++.+|+.|++.++++..- ..+.+|||+|+++||+|+ +|.|-.. .+.|||..||.+| +. .+=..++
T Consensus 5 m~~~~~~~L~~~A~~a~~~ayaP-yS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~-~~i~aia 81 (138)
T 3r2n_A 5 MGDVNWDTLQKAAVAARANSYAP-YSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGG-GRLVAVY 81 (138)
T ss_dssp --CCCHHHHHHHHHHHHTTCBCT-TTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEEEEE
T ss_pred CchHhHHHHHHHHHHHHHhccCC-CCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCC-CceEEEE
Confidence 44445677999999988877532 236899999999999998 8999653 3789999999998 32 1223466
Q ss_pred Ec------CCCCCCCCchhHHHHHHHhCCCEEEEEe
Q 039210 113 LN------MEPGDCHGDHTAVSALVQAGITRVVVGI 142 (612)
Q Consensus 113 vT------lEPC~~~g~~~C~~ai~~agI~rVv~~~ 142 (612)
|+ +.|| ..|-+.|.+.+-..|++..
T Consensus 82 v~~~~~~~~~PC-----G~CRQ~l~E~~~~~i~v~~ 112 (138)
T 3r2n_A 82 CVDGNGDSLMPC-----GRCRQLLYEHGGPELKIMT 112 (138)
T ss_dssp EECTTSCBCCCC-----HHHHHHHHHHHCTTCEEEE
T ss_pred EEcCCCCcCCCC-----HHHHHHHHHhCCCCEEEEC
Confidence 66 7899 3599999997633355543
No 56
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.12 E-value=1e-05 Score=74.22 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cC-CCCCcEEEEc--
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GS-FCRGATAYLN-- 114 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~-~~~g~tlYvT-- 114 (612)
++.+|+.|++.++++.. ...+.+|||+|+++||+|+ +|.|-.. .+.|||..||.+| |. .+....++..
T Consensus 12 ~~~L~~~A~~a~~~Aya-PYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYV-PYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTK 89 (141)
T ss_dssp HHHHHHHHHHHHTTCBC-TTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhcCC-CcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCC
Confidence 45689999988887753 2236799999999999888 7999543 4689999999998 32 2333344443
Q ss_pred --CCCCCCCCchhHHHHHHHhCC--CEEEEEe
Q 039210 115 --MEPGDCHGDHTAVSALVQAGI--TRVVVGI 142 (612)
Q Consensus 115 --lEPC~~~g~~~C~~ai~~agI--~rVv~~~ 142 (612)
+.|| ..|-+.|.+.+- -+|++..
T Consensus 90 ~~~~PC-----G~CRQ~l~E~~~~~~~V~~~~ 116 (141)
T 2d30_A 90 RPVPPC-----GACRQVMVELCKQDTKVYLSN 116 (141)
T ss_dssp SCCCCC-----HHHHHHHHHHSCTTCEEEEEC
T ss_pred CccCcC-----HHHHHHHHHhcCCCeEEEEEC
Confidence 6799 359999999752 2444443
No 57
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.72 E-value=8.6e-05 Score=76.08 Aligned_cols=84 Identities=17% Similarity=0.016 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC------CCChHHHHHHHHccC--CCCCcEEEEcCC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ------GTKPAEVQAVEAGGS--FCRGATAYLNME 116 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~------~~~HAE~~Ai~~a~~--~~~g~tlYvTlE 116 (612)
++.+|..+...|++.......+.+|||+++++||+|+ +|.|-.. .+.|||.+||.+|-. ..+-..++|+..
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~~~~~~iav~~~ 127 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYT 127 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 4456655655665543333347899999998999988 7999553 268999999999821 123467888999
Q ss_pred CCCCCCchhHHHHHHHhC
Q 039210 117 PGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 117 PC~~~g~~~C~~ai~~ag 134 (612)
|| ..|-+.|.+.+
T Consensus 128 PC-----G~CRQ~l~E~~ 140 (294)
T 1ctt_A 128 PC-----GHCRQFMNELN 140 (294)
T ss_dssp CC-----HHHHHHHTTBT
T ss_pred CC-----HHHHHHHHHhC
Confidence 99 35999999985
No 58
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.54 E-value=0.00014 Score=67.01 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cC-CCCCcEEEE---
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GS-FCRGATAYL--- 113 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~-~~~g~tlYv--- 113 (612)
.+..++.|++.++++..- ..+.+|||+|...||+|+ +|.|-.. .+.|||..||.+| |. .+....++.
T Consensus 25 ~~~L~~~A~~a~~~AYaP-YS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~~i~aiavv~~~~ 102 (150)
T 3mpz_A 25 WNALRSKAIEVSRHAYAP-YSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDG 102 (150)
T ss_dssp HHHHHHHHHHHHTTCBCT-TTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHhccCC-CCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCCCceEEEEEEcCCC
Confidence 466899998888876532 346789999999999999 8999654 4789999999998 32 233333332
Q ss_pred -cCCCCCCCCchhHHHHHHHhCCCEEEE
Q 039210 114 -NMEPGDCHGDHTAVSALVQAGITRVVV 140 (612)
Q Consensus 114 -TlEPC~~~g~~~C~~ai~~agI~rVv~ 140 (612)
.+.|| ..|-+.|.+.+=..|++
T Consensus 103 ~~~~PC-----G~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 103 GVLMPC-----GRCRQVLLEHGGPELLI 125 (150)
T ss_dssp CBCCCC-----HHHHHHHHHHHCTTCEE
T ss_pred CccCCC-----HHHHHHHHHhCCCCEEE
Confidence 25799 35999999875223443
No 59
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.38 E-value=0.00051 Score=70.36 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---c---CCCCCcEEEEc
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---G---SFCRGATAYLN 114 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~---~~~~g~tlYvT 114 (612)
++.+++.|++.++++... ..+.+|||+|+++||+|+ +|.|-. ..+.|||..||.+| | ..++..++|.+
T Consensus 188 ~~~L~~~A~~a~~~ayaP-YS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~ 265 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMP-YSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEK 265 (294)
T ss_dssp SSHHHHHHHHHHHTCBCT-TTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCC-cCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEec
Confidence 467999999999987532 227899999999999766 588743 36799999999988 3 24678889988
Q ss_pred CC----CCCCCCchhHHHHHHHhCC
Q 039210 115 ME----PGDCHGDHTAVSALVQAGI 135 (612)
Q Consensus 115 lE----PC~~~g~~~C~~ai~~agI 135 (612)
.+ || .+|-..|.+.+-
T Consensus 266 ~~~~~sPC-----G~CRq~L~ef~~ 285 (294)
T 1ctt_A 266 ADAPLIQW-----DATSATLKALGC 285 (294)
T ss_dssp TTCSSCCH-----HHHHHHHHHHTC
T ss_pred CCCCcCcc-----HHHHHHHHHHCC
Confidence 77 88 359999999764
No 60
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=97.04 E-value=0.0041 Score=57.78 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred cccCCCcccccC--CcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC--CCCChHHHHHHHHc--
Q 039210 29 LVANSAPVFCKF--SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA--QGTKPAEVQAVEAG-- 102 (612)
Q Consensus 29 ~~~~~~~~~~~~--~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~--~~~~HAE~~Ai~~a-- 102 (612)
...+..+.+..+ .+..|+..++.|.+..+++.. +.+.+|||++.+.||+|+ +|.|-. ..+.+||..||-+|
T Consensus 13 ~~~~~~~~~~~~~~L~~ed~~Li~~A~~a~~~~Py--S~~f~VGAAll~~dG~i~-tG~NVEn~~~~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 13 EAQTQGPGSMAPEPLSAAGQNLIDTATSVINGIPV--SDFYSVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAA 89 (158)
T ss_dssp ------------CBCCHHHHHHHHHHHHHHHTSCC--CSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHH
T ss_pred hccccCCcccccccCCHHHHHHHHHHHHHHHhCCC--CCCCcEEEEEEeCCCCEE-EEEccccCCccccHHHHHHHHHHH
Confidence 334444444432 234577899999887765321 223689999999999988 788853 35689999999998
Q ss_pred -cCCCCCcEEEEc------CCCCCCCCchhHHHHHHHhC
Q 039210 103 -GSFCRGATAYLN------MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 103 -~~~~~g~tlYvT------lEPC~~~g~~~C~~ai~~ag 134 (612)
|..--.+.+-|+ +-|| ..|-+.|.+.+
T Consensus 90 ~G~~~~~ai~vv~~~~~~~~~PC-----G~CRQvL~Ef~ 123 (158)
T 3oj6_A 90 AGATKLTHIVAIANEGRGILSPC-----GRCRQVLADLH 123 (158)
T ss_dssp TTCCCEEEEEEEETTTTEEECCC-----HHHHHHHHHHS
T ss_pred hCCCceEEEEEEeCCCCCcCCCC-----HHHHHHHHHhC
Confidence 321111222222 2488 24999999875
No 61
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.39 E-value=0.016 Score=52.67 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC----CCChHHHHHHHHc---cCCC-CCcEEEEc--
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ----GTKPAEVQAVEAG---GSFC-RGATAYLN-- 114 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~----~~~HAE~~Ai~~a---~~~~-~g~tlYvT-- 114 (612)
+...++.|.+..+++.. ...+.+|||++.+.||+|+ +|.|-.. .+.+||..||-+| |... +=..+.|.
T Consensus 11 ~~~L~~~A~~a~~~Aya-PYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~ 88 (138)
T 3dmo_A 11 HHALIEAAKAAREKAYA-PYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGE 88 (138)
T ss_dssp HHHHHHHHHHHHTTCBC-TTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEES
T ss_pred HHHHHHHHHHHHHhccC-CcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcC
Confidence 66788888877776643 3346789999999999987 4888543 3689999999998 3320 11233443
Q ss_pred ----CCCCCCCCchhHHHHHHHhC
Q 039210 115 ----MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 115 ----lEPC~~~g~~~C~~ai~~ag 134 (612)
+-|| ..|-+.|.+.+
T Consensus 89 ~~~~~~PC-----G~CRQ~l~Ef~ 107 (138)
T 3dmo_A 89 THGPIAPC-----GACRQVMIELG 107 (138)
T ss_dssp CSSSCCCC-----HHHHHHHHHHH
T ss_pred CCCccCCC-----HHHHHHHHHhC
Confidence 4588 24999998874
No 62
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=95.63 E-value=0.033 Score=56.86 Aligned_cols=84 Identities=18% Similarity=0.082 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCC------CCChHHHHHHHHc---cCCCCCcEEEEcC
Q 039210 45 DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQ------GTKPAEVQAVEAG---GSFCRGATAYLNM 115 (612)
Q Consensus 45 d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~------~~~HAE~~Ai~~a---~~~~~g~tlYvTl 115 (612)
+..++...+..|++.....-.+.+|||++...||+|+ +|.|-.. .+.|||..||-+| |+. +=..+.|..
T Consensus 52 ~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~-~i~~iav~~ 129 (298)
T 4eg2_A 52 DADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK-GVADITINF 129 (298)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS-CEEEEEESS
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC-ceEEEEeec
Confidence 3445555556666554444557899999998999977 4888652 3689999999998 321 224577788
Q ss_pred CCCCCCCchhHHHHHHHhCC
Q 039210 116 EPGDCHGDHTAVSALVQAGI 135 (612)
Q Consensus 116 EPC~~~g~~~C~~ai~~agI 135 (612)
-|| ..|-..|.+.+-
T Consensus 130 ~PC-----G~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 130 SPC-----GHCRQFMNELTT 144 (298)
T ss_dssp CCC-----HHHHHHHTTBTT
T ss_pred CCC-----HHHHHHHHHhcC
Confidence 999 349999988763
No 63
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=93.69 E-value=0.18 Score=48.50 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=50.3
Q ss_pred CChHHHHHHHHccC-CC-----CCcEEEEcCCCCCCCCchh-HHHHHHH-----hCCCEEEEEeeCC--CchhhhHHHHH
Q 039210 91 TKPAEVQAVEAGGS-FC-----RGATAYLNMEPGDCHGDHT-AVSALVQ-----AGITRVVVGIRNP--LQHLRGQAVRA 156 (612)
Q Consensus 91 ~~HAE~~Ai~~a~~-~~-----~g~tlYvTlEPC~~~g~~~-C~~ai~~-----agI~rVv~~~~dp--~~~~~g~g~~~ 156 (612)
..|||+.-|..... .+ =.-|.|+|..|| + ||..|++ .+|.=.+|++.=- ++ ..-.|+..
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC------~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~-~~~~gLr~ 150 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPC------FSCAQEMAKFISKNKHVSLCIKTARIYDDQG-RCQEGLRT 150 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCCh------HHHHHHHHHHHhhCCCeEEEEEEEeecccCc-hHHHHHHH
Confidence 47999999987642 22 246889999999 6 9999987 3455445544311 11 23468999
Q ss_pred HHhCCcEEEEcc
Q 039210 157 LRSQGLQVHVLG 168 (612)
Q Consensus 157 l~~~gi~V~~~~ 168 (612)
|.++|+.|..+.
T Consensus 151 L~~aG~~v~iM~ 162 (203)
T 3v4k_A 151 LAEAGAKISIMT 162 (203)
T ss_pred HHHCCCeEEecC
Confidence 999999998764
No 64
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=93.01 E-value=0.28 Score=50.02 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCC----CCCChHHHHHHHHc---cCC---CCCcEEEEc-
Q 039210 46 AAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYA----QGTKPAEVQAVEAG---GSF---CRGATAYLN- 114 (612)
Q Consensus 46 ~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~----~~~~HAE~~Ai~~a---~~~---~~g~tlYvT- 114 (612)
+..++.|++.++++..- ..+.+|||.|.++||+|.. |.|-. ..+..||..||-+| |.. .+...++-.
T Consensus 193 ~~L~~~A~~a~~~ayaP-YS~~~vGAAl~t~dG~iyt-G~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~ 270 (298)
T 4eg2_A 193 EELIQQALRAMNISHSP-YTQNFSGVALKMRSGAIYL-GAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESA 270 (298)
T ss_dssp CHHHHHHHHHHTTCBCT-TTCCCEEEEEEETTSCEEE-EECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred HHHHHHHHHHHHhccCC-ccCCCeEEEEEeCCCCEEE-EEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCC
Confidence 56899999988887532 3467899999999999875 76643 35789999999988 432 333334332
Q ss_pred CCCCCCCCchhHHHHHHHhC
Q 039210 115 MEPGDCHGDHTAVSALVQAG 134 (612)
Q Consensus 115 lEPC~~~g~~~C~~ai~~ag 134 (612)
-+||+.- ..|-..|.+.+
T Consensus 271 ~~~~sPC--G~CRqvL~e~~ 288 (298)
T 4eg2_A 271 TGKISHL--ADTQATLEVIN 288 (298)
T ss_dssp TCSSCCH--HHHHHHHHHHC
T ss_pred CCCcCCc--HHHHHHHHHhC
Confidence 2333100 13777777654
No 65
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=92.77 E-value=0.41 Score=45.51 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCcEEEEEEe--cCCeE--EEEeeC----CCCCCChHHHHHHHHccC-CCC-----CcEEEEcCCCCCCCCchh-HHHHH
Q 039210 66 HPNFGCLIAT--STGKV--AGEGYL----YAQGTKPAEVQAVEAGGS-FCR-----GATAYLNMEPGDCHGDHT-AVSAL 130 (612)
Q Consensus 66 ~~~vGaViv~--~~g~i--i~~G~n----~~~~~~HAE~~Ai~~a~~-~~~-----g~tlYvTlEPC~~~g~~~-C~~ai 130 (612)
|...=|-.|. +++.- ...|+- ......|||+.=|..... .+. .-|-|+|..|| + ||..|
T Consensus 31 n~T~LCYeVk~~~~~s~~~~~~g~~~nq~~~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC------~~CA~~v 104 (190)
T 3vow_A 31 NETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPC------PDCAGEV 104 (190)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEETTSCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCC------HHHHHHH
T ss_pred CceEEEEEEEccCCCCCCccccCeecCcCCCcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCch------HHHHHHH
Confidence 3445566663 12222 234542 223457999999988632 332 36899999999 6 99999
Q ss_pred HH-----hCCCEEEEEeeCCC--chhhhHHHHHHHhCCcEEEEcc
Q 039210 131 VQ-----AGITRVVVGIRNPL--QHLRGQAVRALRSQGLQVHVLG 168 (612)
Q Consensus 131 ~~-----agI~rVv~~~~dp~--~~~~g~g~~~l~~~gi~V~~~~ 168 (612)
.. .+|.=.+|++.=-. ..-.-.|+..|.++|+.|....
T Consensus 105 a~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~iM~ 149 (190)
T 3vow_A 105 AEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMD 149 (190)
T ss_dssp HHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEEeC
Confidence 87 46776677765211 1123468999999999998864
No 66
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=30.72 E-value=1.3e+02 Score=32.80 Aligned_cols=100 Identities=25% Similarity=0.248 Sum_probs=67.1
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEc-CCCCCCCCchh-HHHHH
Q 039210 53 ADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLN-MEPGDCHGDHT-AVSAL 130 (612)
Q Consensus 53 ~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvT-lEPC~~~g~~~-C~~ai 130 (612)
+..|++....+.-| .-|++ +||+.|+.|.-+.. ..|+-..|+.+|+..++|+.|=.- ..|= + |....
T Consensus 414 L~fAw~v~K~vkSN---AIv~a-kdg~tvGiGaGQ~s-RV~s~r~A~~kAg~~~~G~vlaSDAFFPF------~D~ve~a 482 (523)
T 3zzm_A 414 LVFAWRACRAVKSN---AIVIA-ADGATVGVGMGQVN-RVDAARLAVERGGERVRGAVAASDAFFPF------PDGLETL 482 (523)
T ss_dssp HHHHHHHGGGSCSS---CEEEE-ETTEEEEEECSCSS-HHHHHHHHHHHHGGGCTTCEEEESSCCSS------HHHHHHH
T ss_pred HHHHHHHHHhccCc---eEEEE-ECCeEEEECCCCcc-hHHHHHHHHHHhccccCCeEEEeccCcCC------CccHHHH
Confidence 34444443334334 23556 99999999986543 347888899999988999988653 4555 5 99999
Q ss_pred HHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEE
Q 039210 131 VQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV 166 (612)
Q Consensus 131 ~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~ 166 (612)
.++||+-|+--.-.-. ....++.-.++||....
T Consensus 483 a~aGv~aIiQPGGSiR---D~evI~aane~giaMvf 515 (523)
T 3zzm_A 483 AAAGVTAVVHPGGSVR---DEEVTEAAAKAGVTLYL 515 (523)
T ss_dssp HHTTCCEEEECCCCTT---HHHHHHHHHHHTCEEEE
T ss_pred HHcCCEEEECCCCCCC---cHHHHHHHHHcCCeEEE
Confidence 9999998875321111 12346777778887654
No 67
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=24.34 E-value=90 Score=27.10 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCEEEEEeeCCCch-hhhHHHHHHHhCCcEEEEccc
Q 039210 126 AVSALVQAGITRVVVGIRNPLQH-LRGQAVRALRSQGLQVHVLGE 169 (612)
Q Consensus 126 C~~ai~~agI~rVv~~~~dp~~~-~~g~g~~~l~~~gi~V~~~~~ 169 (612)
=...++..++.-|++|+-..... ..-.-.+.|+++||.|+....
T Consensus 53 ~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 53 DVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp HHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred HHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 33455666788899998765543 455557899999999998754
No 68
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=22.71 E-value=77 Score=27.95 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=32.7
Q ss_pred HHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEccc
Q 039210 127 VSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGE 169 (612)
Q Consensus 127 ~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~ 169 (612)
...++..++.-|++|+-.......-.-.+.|+++||.|+....
T Consensus 57 l~~ll~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 57 MDAVLALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp SHHHHHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECH
T ss_pred HHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 3567777899999998765544444557899999999998764
No 69
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=21.83 E-value=3.3e+02 Score=26.18 Aligned_cols=83 Identities=8% Similarity=0.046 Sum_probs=54.6
Q ss_pred cCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCCchhHHHHHHHhC-CCEEEEEeeCCCchhhhHHH
Q 039210 76 STGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAG-ITRVVVGIRNPLQHLRGQAV 154 (612)
Q Consensus 76 ~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g~~~C~~ai~~ag-I~rVv~~~~dp~~~~~g~g~ 154 (612)
+||..|+.|.....+.+.+=+.||.+- ..++.|++.+ .|... ....+.++.+| |+|++.+..-.++.+ .
T Consensus 19 kdG~tV~~gGf~~~g~P~~li~aL~~~--~~kdLtli~~--~~g~~--~~g~~~L~~~G~v~r~i~s~~g~~~~~----~ 88 (235)
T 3rrl_A 19 KDGDTILVGGFGLCGIPEYAIDYIYKK--GIKDLIVVSN--NCGVD--DFGLGILLEKKQIKKIIASYVGENKIF----E 88 (235)
T ss_dssp CTTCEEEECCBTTBTCCHHHHHHHHHH--TCCSEEEECS--CCCCS--SSGGGGGGTTTCEEEEEESCCCSCHHH----H
T ss_pred CCCCEEEECCcCccCCHHHHHHHHHhc--CCCcEEEEEc--CCCCC--CcCHHHHHhCCCeeEEEeccccCCHHH----H
Confidence 788777777656678888888888774 4789999876 34210 12567888888 677775544334322 3
Q ss_pred HHHHhCCcEEEEcc
Q 039210 155 RALRSQGLQVHVLG 168 (612)
Q Consensus 155 ~~l~~~gi~V~~~~ 168 (612)
+...+..|+++...
T Consensus 89 ~~~~~G~ie~~~~p 102 (235)
T 3rrl_A 89 SQMLNGEIEVVLTP 102 (235)
T ss_dssp HHHHHTSSEEEECC
T ss_pred HHHHcCCeEEEECC
Confidence 55566678887643
Done!