BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039213
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZJI6|RNJ_HELPJ Ribonuclease J OS=Helicobacter pylori (strain J99) GN=jhp_1323 PE=3
SV=1
Length = 692
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+++ P+GGLGEIG N M++ I+IDAG
Sbjct: 144 VKITPLGGLGEIGGNMMVIETPKSAIVIDAG 174
>sp|P56185|RNJ_HELPY Ribonuclease J OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=HP_1430 PE=3 SV=1
Length = 689
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+++ P+GGLGEIG N M++ I+IDAG
Sbjct: 141 VKITPLGGLGEIGGNMMVIETPKSAIVIDAG 171
>sp|P54123|RNJ_SYNY3 Ribonuclease J OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0551 PE=3 SV=1
Length = 640
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 79 YTNICIFIYNGEFNIQQIDESPLDGKVFDREALEELSKEGVTLVIK---NGEMLGVS 132
+T + + +++G+F +ID +P+DG+ FD + + E ++GV ++ N E+ G++
Sbjct: 156 HTPLGVVMHSGDF---KIDHTPIDGEFFDLQKVAEYGEKGVLCLLSDSTNAEVPGIT 209
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
L++LP+GGL EIG N + D +L+DAG
Sbjct: 10 LKILPLGGLHEIGKNTCVFEYDDEILLLDAG 40
>sp|Q49X63|RNJ2_STAS1 Ribonuclease J 2 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1490 PE=3 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q4L5X8|RNJ2_STAHJ Ribonuclease J 2 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH1638 PE=3 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q7A115|RNJ2_STAAW Ribonuclease J 2 OS=Staphylococcus aureus (strain MW2) GN=MW1158
PE=3 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q6G9T8|RNJ2_STAAS Ribonuclease J 2 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1209 PE=3 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q6GHG0|RNJ2_STAAR Ribonuclease J 2 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1251 PE=1 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q7A5X6|RNJ2_STAAN Ribonuclease J 2 OS=Staphylococcus aureus (strain N315) GN=SA1118
PE=1 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q99UJ7|RNJ2_STAAM Ribonuclease J 2 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=SAV1275 PE=1 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q5HGF6|RNJ2_STAAC Ribonuclease J 2 OS=Staphylococcus aureus (strain COL)
GN=SACOL1294 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q2YXP1|RNJ2_STAAB Ribonuclease J 2 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB1137 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q2FZ19|RNJ2_STAA8 Ribonuclease J 2 OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_01252 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q2FHG3|RNJ2_STAA3 Ribonuclease J 2 OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_1168 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q8CST0|RNJ2_STAES Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_0952 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q5HPR6|RNJ2_STAEQ Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC 35984
/ RP62A) GN=SERP0842 PE=3 SV=2
Length = 557
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+R++P+GG+GEI N +V D ++DAG
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAG 41
>sp|Q45493|RNJ1_BACSU Ribonuclease J 1 OS=Bacillus subtilis (strain 168) GN=rnjA PE=1
SV=1
Length = 555
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 43 VLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
V +GGLGEIG N V D +LIDAG
Sbjct: 11 VFALGGLGEIGKNTYAVQFQDEIVLIDAG 39
>sp|Q49WL3|RNJ1_STAS1 Ribonuclease J 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1701 PE=3 SV=1
Length = 620
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
+ V +GGLGEIG N V D ++IDAG
Sbjct: 9 VAVYALGGLGEIGKNTYAVEYQDEIVIIDAG 39
>sp|Q6DNF7|GCY32_CAEEL Soluble guanylate cyclase gcy-32 OS=Caenorhabditis elegans
GN=gcy-32 PE=2 SV=1
Length = 684
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 73 PGFGFQYTNICIFIYNGEFNIQQIDESPLDGKVFDREALEELSKEGVTL 121
P + NIC FI N F + Q+ SPL K D + EEL +E TL
Sbjct: 278 PQIPLDFENICNFI-NAVF-VLQVKTSPLKKKHMDAMSQEELKQEMETL 324
>sp|Q2YX35|RNJ1_STAAB Ribonuclease J 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB0955c PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q8FLV6|LDH_COREF L-lactate dehydrogenase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=ldh PE=3 SV=2
Length = 317
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 58 LVGNYDRYILIDAGDPGFGFQYTNICIFIYNGEFNIQQIDESPLDGKVFD 107
VGN R +LI AGD G + Y + I + E I IDE L+G V D
Sbjct: 3 FVGN--RVVLIGAGDVGVAYAYALVNQGIAD-ELCIIDIDEKKLEGNVMD 49
>sp|Q7A171|RNJ1_STAAW Ribonuclease J 1 OS=Staphylococcus aureus (strain MW2) GN=MW0972
PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q6GAC5|RNJ1_STAAS Ribonuclease J 1 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1024 PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q6GHZ6|RNJ1_STAAR Ribonuclease J 1 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1063 PE=1 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q7A682|RNJ1_STAAN Ribonuclease J 1 OS=Staphylococcus aureus (strain N315) GN=SA0940
PE=1 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q99V09|RNJ1_STAAM Ribonuclease J 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=SAV1089 PE=1 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q5HGZ5|RNJ1_STAAC Ribonuclease J 1 OS=Staphylococcus aureus (strain COL)
GN=SACOL1098 PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q2FZG9|RNJ1_STAA8 Ribonuclease J 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_01035 PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q2FHZ1|RNJ1_STAA3 Ribonuclease J 1 OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_0989 PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGEIG N V D ++IDAG
Sbjct: 1 MKQLHPNEVG----VYALGGLGEIGKNTYAVEYKDEIVIIDAG 39
>sp|Q8CT16|RNJ1_STAES Ribonuclease J 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_0787 PE=3 SV=1
Length = 560
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGE+G N V D ++IDAG
Sbjct: 1 MKQLHSNEVG----VYALGGLGEVGKNTYAVEYKDEIVIIDAG 39
>sp|Q5HQ80|RNJ1_STAEQ Ribonuclease J 1 OS=Staphylococcus epidermidis (strain ATCC 35984
/ RP62A) GN=SERP0676 PE=3 SV=1
Length = 560
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 29 MEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
M+Q + G V +GGLGE+G N V D ++IDAG
Sbjct: 1 MKQLHSNEVG----VYALGGLGEVGKNTYAVEYKDEIVIIDAG 39
>sp|P48564|YN35_YEAST Uncharacterized protein YNL295W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL295W PE=1 SV=1
Length = 524
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 92 NIQQIDESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLR 135
NIQ +D S DGK+ +E +E+L + + I + E L SH R
Sbjct: 163 NIQVVDASEKDGKLNVQEIIEDLQRTSLRESIHSMEQLPSSHKR 206
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
P +RV P+G ++G +C+LV + +++D G
Sbjct: 2 PEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCG 34
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
P +RV P+G ++G +C+LV + +++D G
Sbjct: 2 PEIRVTPLGAGQDVGRSCILVSISGKNVMLDCG 34
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
P +RV P+G ++G +C+LV + +++D G
Sbjct: 2 PEIRVTPLGAGQDVGRSCILVSISGKNVMLDCG 34
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
P +RV P+G ++G +C+LV + +++D G
Sbjct: 2 PEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCG 34
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
P +RV P+G ++G +C+LV + +++D G
Sbjct: 2 PEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCG 34
>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=Cgl1970 PE=3 SV=2
Length = 718
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 19 KSME--DSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAG 71
KSM+ D QR E +NG LR+ +GG+ EIG N + +R +++D G
Sbjct: 133 KSMQGADLTQRLPEPPKAPANG--LRIYALGGISEIGRNMTVFEYNNRLLIVDCG 185
>sp|Q8N1N4|K2C78_HUMAN Keratin, type II cytoskeletal 78 OS=Homo sapiens GN=KRT78 PE=2
SV=2
Length = 520
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 12 GRTEGPRKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMN 55
G EG R S S R +F E S GP L + P GG+ E+ +N
Sbjct: 46 GCLEGSRGSTWGSGGRLGVRFGEWSGGPGLSLCPPGGIQEVTIN 89
>sp|O77384|LRR4_PLAF7 Protein PFC0760c OS=Plasmodium falciparum (isolate 3D7) GN=PFC0760c
PE=4 SV=1
Length = 3394
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 92 NIQQIDESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVLSNGFISLGKEN 151
NIQQ++E ++ K F ++E+ K+ LV+KN + ++H FI+L N
Sbjct: 379 NIQQLNEQLVNYKNF----IKEMEKKYKQLVVKNNSLFSITH---------DFINLKNSN 425
Query: 152 LQVI 155
+ +I
Sbjct: 426 IIII 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.142 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,774,274
Number of Sequences: 539616
Number of extensions: 2807599
Number of successful extensions: 6514
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6461
Number of HSP's gapped (non-prelim): 60
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)