Query 039213
Match_columns 156
No_of_seqs 142 out of 1193
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0595 mRNA degradation ribon 99.8 4.7E-19 1E-23 162.5 10.7 103 38-140 6-141 (555)
2 COG1782 Predicted metal-depend 99.7 2.9E-17 6.3E-22 149.2 6.9 124 17-141 158-327 (637)
3 TIGR03675 arCOG00543 arCOG0054 99.7 1.1E-16 2.4E-21 148.5 10.7 123 18-141 153-321 (630)
4 TIGR00649 MG423 conserved hypo 99.7 2.2E-16 4.7E-21 138.7 10.7 100 41-140 1-133 (422)
5 COG1236 YSH1 Predicted exonucl 99.3 1.4E-11 3.1E-16 109.8 10.2 102 41-142 1-141 (427)
6 smart00849 Lactamase_B Metallo 99.0 8.6E-10 1.9E-14 82.7 7.8 92 50-141 2-120 (183)
7 KOG1136 Predicted cleavage and 99.0 8.8E-10 1.9E-14 97.5 6.1 67 40-106 3-100 (501)
8 TIGR02651 RNase_Z ribonuclease 98.9 3.4E-09 7.4E-14 88.0 7.9 98 43-140 2-134 (299)
9 PRK00055 ribonuclease Z; Revie 98.9 1.7E-09 3.6E-14 87.6 5.4 67 40-106 1-98 (270)
10 PLN02962 hydroxyacylglutathion 98.9 4.7E-09 1E-13 87.9 8.0 80 51-143 20-124 (251)
11 PRK00685 metal-dependent hydro 98.9 1E-08 2.2E-13 81.7 9.1 82 53-140 7-106 (228)
12 PLN02469 hydroxyacylglutathion 98.9 5.3E-09 1.2E-13 87.5 7.6 84 42-141 2-109 (258)
13 PRK02113 putative hydrolase; P 98.9 6.3E-09 1.4E-13 84.7 7.8 88 53-140 34-148 (252)
14 PRK11244 phnP carbon-phosphoru 98.9 7E-09 1.5E-13 84.8 7.9 86 53-140 36-138 (250)
15 PRK11921 metallo-beta-lactamas 98.9 8.9E-09 1.9E-13 90.2 8.5 90 52-146 31-144 (394)
16 PRK04286 hypothetical protein; 98.8 3.6E-08 7.7E-13 83.9 9.1 98 41-139 1-153 (298)
17 TIGR03307 PhnP phosphonate met 98.7 2.8E-08 6.1E-13 80.6 7.0 86 53-140 26-128 (238)
18 PLN02398 hydroxyacylglutathion 98.7 3.7E-08 8.1E-13 85.8 7.3 82 52-143 84-186 (329)
19 PRK05452 anaerobic nitric oxid 98.7 4.9E-08 1.1E-12 88.3 7.5 93 52-148 33-150 (479)
20 TIGR03413 GSH_gloB hydroxyacyl 98.7 5E-08 1.1E-12 80.7 6.5 79 52-142 7-105 (248)
21 PF00753 Lactamase_B: Metallo- 98.6 1.4E-08 3E-13 75.1 1.8 45 50-94 2-58 (194)
22 KOG1137 mRNA cleavage and poly 98.6 4.4E-08 9.6E-13 90.5 4.6 71 37-107 10-106 (668)
23 PRK02126 ribonuclease Z; Provi 98.5 2.9E-07 6.4E-12 79.9 8.0 56 50-106 12-90 (334)
24 PRK05184 pyrroloquinoline quin 98.5 4.5E-07 9.9E-12 77.2 8.9 89 51-140 36-159 (302)
25 PRK10241 hydroxyacylglutathion 98.5 2.1E-07 4.5E-12 77.2 6.5 79 52-143 9-109 (251)
26 TIGR02649 true_RNase_BN ribonu 98.5 2.5E-07 5.3E-12 77.9 6.8 89 52-140 15-136 (303)
27 TIGR02108 PQQ_syn_pqqB coenzym 98.4 8.6E-07 1.9E-11 76.0 7.1 88 53-140 37-158 (302)
28 PF13483 Lactamase_B_3: Beta-l 98.2 4.3E-06 9.3E-11 64.0 7.1 77 52-143 5-85 (163)
29 COG0491 GloB Zn-dependent hydr 98.1 1.4E-05 3.1E-10 62.2 8.5 100 40-140 11-144 (252)
30 PF12706 Lactamase_B_2: Beta-l 98.1 1.3E-05 2.7E-10 61.4 6.8 76 65-140 2-109 (194)
31 COG2220 Predicted Zn-dependent 98.0 7.1E-05 1.5E-09 61.6 9.7 94 38-140 4-122 (258)
32 COG1237 Metal-dependent hydrol 97.9 1E-05 2.2E-10 68.8 3.8 49 56-104 24-96 (259)
33 PRK11709 putative L-ascorbate 97.8 0.00018 3.8E-09 63.4 10.4 94 38-141 35-182 (355)
34 COG0426 FpaA Uncharacterized f 97.8 7.2E-05 1.6E-09 66.9 7.1 85 52-141 34-142 (388)
35 COG1234 ElaC Metal-dependent h 97.7 0.00016 3.4E-09 61.8 8.0 67 40-106 1-98 (292)
36 TIGR00361 ComEC_Rec2 DNA inter 97.7 0.00027 6E-09 66.2 9.4 85 39-140 440-552 (662)
37 KOG0813 Glyoxylase [General fu 97.6 0.00019 4.1E-09 61.4 7.0 87 53-142 12-115 (265)
38 PRK11539 ComEC family competen 97.3 0.00046 1E-08 65.7 6.0 50 40-94 502-566 (755)
39 COG1235 PhnP Metal-dependent h 97.2 0.00028 6.1E-09 58.8 2.9 24 83-106 65-100 (269)
40 KOG1137 mRNA cleavage and poly 97.1 0.00095 2.1E-08 62.4 5.8 101 3-106 111-252 (668)
41 COG2248 Predicted hydrolase (m 97.0 0.0034 7.4E-08 54.2 7.8 98 41-139 1-152 (304)
42 KOG0814 Glyoxylase [General fu 96.7 0.0065 1.4E-07 50.3 6.7 85 54-141 21-118 (237)
43 KOG1135 mRNA cleavage and poly 96.6 0.0039 8.5E-08 59.5 6.1 65 41-105 2-90 (764)
44 COG2333 ComEC Predicted hydrol 96.3 0.015 3.2E-07 50.3 7.2 94 40-141 45-161 (293)
45 TIGR02650 RNase_Z_T_toga ribon 95.9 0.0043 9.3E-08 53.4 1.9 46 61-106 16-86 (277)
46 PF02112 PDEase_II: cAMP phosp 94.8 0.042 9.1E-07 48.4 4.5 60 47-106 10-123 (335)
47 KOG1361 Predicted hydrolase in 90.3 0.36 7.8E-06 44.7 4.1 52 83-138 115-177 (481)
48 COG2015 Alkyl sulfatase and re 90.2 0.76 1.7E-05 43.2 6.1 62 27-94 105-179 (655)
49 PF14597 Lactamase_B_5: Metall 87.1 0.4 8.6E-06 39.7 1.9 59 48-106 17-91 (199)
50 PF13691 Lactamase_B_4: tRNase 86.5 1.3 2.8E-05 30.2 3.8 40 55-94 13-62 (63)
51 COG5212 PDE1 Low-affinity cAMP 83.5 0.53 1.2E-05 41.4 1.1 24 83-106 115-154 (356)
52 KOG2121 Predicted metal-depend 82.0 0.35 7.7E-06 46.7 -0.6 55 39-94 441-517 (746)
53 PTZ00334 trans-sialidase; Prov 34.7 26 0.00057 34.5 2.1 23 4-26 21-44 (780)
54 KOG4736 Uncharacterized conser 26.0 70 0.0015 28.3 3.0 43 52-94 93-140 (302)
No 1
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.79 E-value=4.7e-19 Score=162.47 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=85.0
Q ss_pred CCCeEEEEccccCcccceEEEEEeCCeEEEEecCCC-------CCCCCcCe-----------eEEEcccCccc-cc----
Q 039213 38 GPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDP-------GFGFQYTN-----------ICIFIYNGEFN-IQ---- 94 (156)
Q Consensus 38 ~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~-------~~~i~~~~-----------~aI~LTHgH~D-IG---- 94 (156)
+.++++++|||.+|+|+|||+++.+++++|+|||+. +.++.+|+ .||||||||+| ||
T Consensus 6 ~~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ 85 (555)
T COG0595 6 KAKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPY 85 (555)
T ss_pred CCceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHH
Confidence 468999999999999999999999999999999982 11112221 19999999999 99
Q ss_pred --------ccccCcchHHHH-HHHhhhh-hcccceEEEecCCCeEEeeceEEeeee
Q 039213 95 --------QIDESPLDGKVF-DREALEE-LSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 95 --------pVY~t~~t~~ll-~~~~~~~-~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
|||++++|++++ .+..++. .......+++++|+++++++++++|..
T Consensus 86 ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~ 141 (555)
T COG0595 86 LLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFP 141 (555)
T ss_pred HHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEe
Confidence 999999999999 5443433 333356799999999999999999976
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.69 E-value=2.9e-17 Score=149.25 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=96.7
Q ss_pred CcccccHHHHhhhhcccCCCCCCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCCC-------C-CcCe-----e-
Q 039213 17 PRKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFG-------F-QYTN-----I- 82 (156)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~-------i-~~~~-----~- 82 (156)
.|++++..++++|++...+ +..|+++.+|||+.|+|++|++|+..++.+|||||++... + ..+. +
T Consensus 158 eR~~iL~~vg~rIhr~~~~-~~~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lD 236 (637)
T COG1782 158 ERREILRNVGRRIHREPLV-KDRWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELD 236 (637)
T ss_pred HHHHHHHHHHHHhcCCccc-cCceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccc
Confidence 4789999999999999988 6889999999999999999999999999999999984321 1 2222 2
Q ss_pred EEEcccCccc-cc------------ccccCcchHHHHH-----H--Hhh-hhh--cc--------cceEEEecCCCeEEe
Q 039213 83 CIFIYNGEFN-IQ------------QIDESPLDGKVFD-----R--EAL-EEL--SK--------EGVTLVIKNGEMLGV 131 (156)
Q Consensus 83 aI~LTHgH~D-IG------------pVY~t~~t~~ll~-----~--~~~-~~~--~~--------~~~~~~l~~Gd~i~i 131 (156)
||+|||||+| +| |||||+.|++++- . ..+ +.. +. -..++++.-|++=+|
T Consensus 237 AViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDI 316 (637)
T COG1782 237 AVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDI 316 (637)
T ss_pred eEEEeecccccccchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCccccc
Confidence 9999999999 99 9999999999982 1 100 100 00 025567888888888
Q ss_pred ec-eEEeeeee
Q 039213 132 SH-LRNRRVLS 141 (156)
Q Consensus 132 g~-~~v~~~~~ 141 (156)
.+ ++++|-+-
T Consensus 317 aPDirLTf~NA 327 (637)
T COG1782 317 APDIRLTFYNA 327 (637)
T ss_pred CCccEEEEecc
Confidence 66 77777663
No 3
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.69 E-value=1.1e-16 Score=148.52 Aligned_cols=123 Identities=16% Similarity=0.231 Sum_probs=95.1
Q ss_pred cccccHHHHhhhhcccCCCCCCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCCC--------CCc-----Cee-E
Q 039213 18 RKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFG--------FQY-----TNI-C 83 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~--------i~~-----~~~-a 83 (156)
|++++..+++.||+.... ..++|++.+|||++|+|+|||+|+.++..+|||||+.... +.. ..+ |
T Consensus 153 r~~~l~~~~~~i~~~~~~-~~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDa 231 (630)
T TIGR03675 153 RKEFLRKLGRRIHRDPIF-KDRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDA 231 (630)
T ss_pred HHHHHHHHHHhhcCCCCC-CCCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcE
Confidence 899999999999999865 6779999999999999999999999999999999985421 111 122 9
Q ss_pred EEcccCccc-cc------------ccccCcchHHHHH-H-Hhh------hhhcc----------cceEEEecCCCeEEee
Q 039213 84 IFIYNGEFN-IQ------------QIDESPLDGKVFD-R-EAL------EELSK----------EGVTLVIKNGEMLGVS 132 (156)
Q Consensus 84 I~LTHgH~D-IG------------pVY~t~~t~~ll~-~-~~~------~~~~~----------~~~~~~l~~Gd~i~ig 132 (156)
|||||+|.| +| |||+|+.|.+++. . .+. ..... ......++.|+.++++
T Consensus 232 VlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~ 311 (630)
T TIGR03675 232 VVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA 311 (630)
T ss_pred EEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec
Confidence 999999999 98 8999999998872 1 110 00000 0235678889999984
Q ss_pred -ceEEeeeee
Q 039213 133 -HLRNRRVLS 141 (156)
Q Consensus 133 -~~~v~~~~~ 141 (156)
++++++..+
T Consensus 312 ~~i~vt~~~A 321 (630)
T TIGR03675 312 PDIKLTFYNA 321 (630)
T ss_pred CCEEEEEecC
Confidence 688888753
No 4
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.68 E-value=2.2e-16 Score=138.70 Aligned_cols=100 Identities=26% Similarity=0.345 Sum_probs=77.5
Q ss_pred eEEEEccccCcccceEEEEEeCCeEEEEecCCCCC--CC-----Cc----------Cee-EEEcccCccc-cc-------
Q 039213 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGF--GF-----QY----------TNI-CIFIYNGEFN-IQ------- 94 (156)
Q Consensus 41 i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~--~i-----~~----------~~~-aI~LTHgH~D-IG------- 94 (156)
|++++|||++|+|+|||+|+.+++++|||||.... .+ .+ ..+ +|||||+|.| +|
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 57999999999999999999999999999998421 11 01 112 9999999999 87
Q ss_pred -----ccccCcchHHHH-HHHhhhhhcccceEEEecCCCeEEee-ceEEeeee
Q 039213 95 -----QIDESPLDGKVF-DREALEELSKEGVTLVIKNGEMLGVS-HLRNRRVL 140 (156)
Q Consensus 95 -----pVY~t~~t~~ll-~~~~~~~~~~~~~~~~l~~Gd~i~ig-~~~v~~~~ 140 (156)
|||+++.+++++ .......+........+++|+.+++| +++++++.
T Consensus 81 ~~~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~ 133 (422)
T TIGR00649 81 TVGFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIR 133 (422)
T ss_pred hCCCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEE
Confidence 799999999998 33322222222346789999999997 49998886
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.4e-11 Score=109.76 Aligned_cols=102 Identities=15% Similarity=0.236 Sum_probs=78.6
Q ss_pred eEEEEccccCcccceEEEEEeCCeEEEEecCCCCCCC------C--cCee-EEEcccCccc-cc------------cccc
Q 039213 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFGF------Q--YTNI-CIFIYNGEFN-IQ------------QIDE 98 (156)
Q Consensus 41 i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~i------~--~~~~-aI~LTHgH~D-IG------------pVY~ 98 (156)
|.+.++|++.++|+.|+.|+.++..+++|||...... . .+.+ +++|||+|.| +| |||+
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~a 80 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYA 80 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceee
Confidence 4678999999999999999999999999999965322 1 1112 8999999999 99 7999
Q ss_pred CcchHHHHH-H-Hhhhhhc---------------ccceEEEecCCCeEEeeceEEeeeeec
Q 039213 99 SPLDGKVFD-R-EALEELS---------------KEGVTLVIKNGEMLGVSHLRNRRVLSN 142 (156)
Q Consensus 99 t~~t~~ll~-~-~~~~~~~---------------~~~~~~~l~~Gd~i~ig~~~v~~~~~~ 142 (156)
|+.|++++. . .+...+. .....+.+.-|+.++++++++++.+.+
T Consensus 81 T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AG 141 (427)
T COG1236 81 TPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAG 141 (427)
T ss_pred ccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCC
Confidence 999999993 1 1111111 113456689999999999999998744
No 6
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.04 E-value=8.6e-10 Score=82.67 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=65.6
Q ss_pred CcccceEEEEEeCCeEEEEecCCCCC-C----C---CcCee-EEEcccCccc-cc-----------ccccCcchHHHHH-
Q 039213 50 GEIGMNCMLVGNYDRYILIDAGDPGF-G----F---QYTNI-CIFIYNGEFN-IQ-----------QIDESPLDGKVFD- 107 (156)
Q Consensus 50 geig~Ncy~v~~~~~~iIID~G~~~~-~----i---~~~~~-aI~LTHgH~D-IG-----------pVY~t~~t~~ll~- 107 (156)
.+.+.|||+|+.++..+|||||.... . + ....+ +||+||.|.| +| +||+++.+.+.+.
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~ 81 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKD 81 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhc
Confidence 35689999999999999999995432 1 1 22223 9999999999 88 5899988888772
Q ss_pred HHh-----hhhhcccceEEEecCCCeEEeeceEEeeeee
Q 039213 108 REA-----LEELSKEGVTLVIKNGEMLGVSHLRNRRVLS 141 (156)
Q Consensus 108 ~~~-----~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~ 141 (156)
... ............+++|+.+++++.++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (183)
T smart00849 82 LLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHT 120 (183)
T ss_pred cchhccccCcCCCCCccceecCCCCEEEeCCceEEEEEC
Confidence 110 0111112345678999999999888888765
No 7
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.97 E-value=8.8e-10 Score=97.46 Aligned_cols=67 Identities=22% Similarity=0.488 Sum_probs=56.9
Q ss_pred CeEEEEccccCcccceEEEEEeCCeEEEEecCCC----------CCCC-----CcCee--EEEcccCccc-cc-------
Q 039213 40 PLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDP----------GFGF-----QYTNI--CIFIYNGEFN-IQ------- 94 (156)
Q Consensus 40 ~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~----------~~~i-----~~~~~--aI~LTHgH~D-IG------- 94 (156)
.|++.+||...++|++|.+|...++.|++|||+. ++.+ .+.+. +|+|||-|+| +|
T Consensus 3 ~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsE 82 (501)
T KOG1136|consen 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSE 82 (501)
T ss_pred cceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHh
Confidence 5899999999999999999999999999999983 1222 11111 9999999999 99
Q ss_pred ------ccccCcchHHHH
Q 039213 95 ------QIDESPLDGKVF 106 (156)
Q Consensus 95 ------pVY~t~~t~~ll 106 (156)
|||+|..|.+++
T Consensus 83 v~GY~GPIYMt~PTkaic 100 (501)
T KOG1136|consen 83 VVGYDGPIYMTYPTKAIC 100 (501)
T ss_pred hhCCCCceEEecchhhhc
Confidence 999999999877
No 8
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.93 E-value=3.4e-09 Score=87.99 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred EEEccccCc-----ccceEEEEEeCCeEEEEecCCCC------CCCCcCee-EEEcccCccc-cc---------------
Q 039213 43 VLPIGGLGE-----IGMNCMLVGNYDRYILIDAGDPG------FGFQYTNI-CIFIYNGEFN-IQ--------------- 94 (156)
Q Consensus 43 ~~~LGg~ge-----ig~Ncy~v~~~~~~iIID~G~~~------~~i~~~~~-aI~LTHgH~D-IG--------------- 94 (156)
+.+||..|. -.++|++|+.++..+|||||... ..+....+ +|||||.|.| ++
T Consensus 2 ~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~ 81 (299)
T TIGR02651 2 ITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRK 81 (299)
T ss_pred EEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCC
Confidence 445554443 35789999999999999999621 11122233 9999999999 75
Q ss_pred ---ccccCcchHHHH-HHHhh--hhhcccceEEEecCCC-eEEeeceEEeeee
Q 039213 95 ---QIDESPLDGKVF-DREAL--EELSKEGVTLVIKNGE-MLGVSHLRNRRVL 140 (156)
Q Consensus 95 ---pVY~t~~t~~ll-~~~~~--~~~~~~~~~~~l~~Gd-~i~ig~~~v~~~~ 140 (156)
+||+++.+.+.+ ..... .....+-....+++++ .++++++++++..
T Consensus 82 ~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (299)
T TIGR02651 82 EPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFP 134 (299)
T ss_pred ceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEE
Confidence 589998888887 32211 1111122346678888 6899999988664
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=98.91 E-value=1.7e-09 Score=87.61 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred CeEEEEccccCcc-----cceEEEEEeCCeEEEEecCCCC------CCCCcCee-EEEcccCccc-cc------------
Q 039213 40 PLRVLPIGGLGEI-----GMNCMLVGNYDRYILIDAGDPG------FGFQYTNI-CIFIYNGEFN-IQ------------ 94 (156)
Q Consensus 40 ~i~~~~LGg~gei-----g~Ncy~v~~~~~~iIID~G~~~------~~i~~~~~-aI~LTHgH~D-IG------------ 94 (156)
+|++..||..+.+ .++||+|+.++..+|||||... ..+....+ +|||||.|.| ++
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~ 80 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLS 80 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhc
Confidence 5889999876654 4899999999999999999632 11222233 9999999999 77
Q ss_pred ------ccccCcchHHHH
Q 039213 95 ------QIDESPLDGKVF 106 (156)
Q Consensus 95 ------pVY~t~~t~~ll 106 (156)
+||+++.+.+++
T Consensus 81 ~~~~~l~iy~p~~~~~~~ 98 (270)
T PRK00055 81 GRTEPLTIYGPKGIKEFV 98 (270)
T ss_pred CCCceEEEECCccHHHHH
Confidence 599998888877
No 10
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.91 E-value=4.7e-09 Score=87.91 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=55.6
Q ss_pred cccceEEEEEeC----CeEEEEecCCC-CCCC-------CcCeeEEEcccCccc-cc------------ccccCcchHHH
Q 039213 51 EIGMNCMLVGNY----DRYILIDAGDP-GFGF-------QYTNICIFIYNGEFN-IQ------------QIDESPLDGKV 105 (156)
Q Consensus 51 eig~Ncy~v~~~----~~~iIID~G~~-~~~i-------~~~~~aI~LTHgH~D-IG------------pVY~t~~t~~l 105 (156)
..+.|||+|.+. ++++|||||.. ...+ .....+||+||+|.| +| ++|+++.+
T Consensus 20 ~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~--- 96 (251)
T PLN02962 20 ESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS--- 96 (251)
T ss_pred CceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc---
Confidence 368999999863 68999999953 2222 233349999999999 88 23333211
Q ss_pred HHHHhhhhhcccceEEEecCCCeEEeeceEEeeeeecc
Q 039213 106 FDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVLSNG 143 (156)
Q Consensus 106 l~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~~~ 143 (156)
....+..+++|+++.+|+.+++.++..|
T Consensus 97 ----------~~~~d~~l~~g~~i~~g~~~l~vi~tPG 124 (251)
T PLN02962 97 ----------GSKADLFVEPGDKIYFGDLYLEVRATPG 124 (251)
T ss_pred ----------CCCCCEEeCCCCEEEECCEEEEEEECCC
Confidence 1122467899999999999998887433
No 11
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.89 E-value=1e-08 Score=81.71 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred cceEEEEEeCCeEEEEecCCCC---CCCCcC--ee-EEEcccCccc-cc-----------ccccCcchHHHHHHHhhhhh
Q 039213 53 GMNCMLVGNYDRYILIDAGDPG---FGFQYT--NI-CIFIYNGEFN-IQ-----------QIDESPLDGKVFDREALEEL 114 (156)
Q Consensus 53 g~Ncy~v~~~~~~iIID~G~~~---~~i~~~--~~-aI~LTHgH~D-IG-----------pVY~t~~t~~ll~~~~~~~~ 114 (156)
|.+||+|+.++..+||||+..+ ..+... .+ +|+|||.|.| ++ +||+++...+.+.. ..+
T Consensus 7 G~s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~ 83 (228)
T PRK00685 7 GHSAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSE---KGV 83 (228)
T ss_pred cceEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHh---cCC
Confidence 5799999999999999996632 112111 23 9999999999 86 67777765555521 111
Q ss_pred cccceEEEecCCCeEEeeceEEeeee
Q 039213 115 SKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 115 ~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
.....++.|+.++++++++.++-
T Consensus 84 ---~~~~~~~~~~~~~~~~~~i~~~p 106 (228)
T PRK00685 84 ---EKTHPMNIGGTVEFDGGKVKLTP 106 (228)
T ss_pred ---CceeeccCCCcEEECCEEEEEEE
Confidence 13467889999999999998754
No 12
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.88 E-value=5.3e-09 Score=87.55 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=57.1
Q ss_pred EEEEccccCcccce-EEEEEeC--CeEEEEecCCCCCCC-------CcCeeEEEcccCccc-cc------------cccc
Q 039213 42 RVLPIGGLGEIGMN-CMLVGNY--DRYILIDAGDPGFGF-------QYTNICIFIYNGEFN-IQ------------QIDE 98 (156)
Q Consensus 42 ~~~~LGg~geig~N-cy~v~~~--~~~iIID~G~~~~~i-------~~~~~aI~LTHgH~D-IG------------pVY~ 98 (156)
++++++. ...| ||+|.++ ++++|||||.. ..+ ..+..+||+||.|.| +| |||+
T Consensus 2 ~i~~~~~---~~dNy~Yli~d~~~~~~vlIDp~~~-~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~ 77 (258)
T PLN02469 2 KIIPVPC---LEDNYAYLIIDESTKDAAVVDPVDP-EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYG 77 (258)
T ss_pred eEEEecc---ccceEEEEEEeCCCCeEEEECCCCh-HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEE
Confidence 4556643 6778 9999876 48999999953 222 222239999999999 88 4666
Q ss_pred CcchHHHHHHHhhhhhcccceEEEecCCCeEEeec-eEEeeeee
Q 039213 99 SPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSH-LRNRRVLS 141 (156)
Q Consensus 99 t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd~i~ig~-~~v~~~~~ 141 (156)
+..+ .. +..++.+++|+++++|+ ..++.++.
T Consensus 78 ~~~~----------~~--~~~~~~v~~gd~i~lg~~~~~~vi~t 109 (258)
T PLN02469 78 GSLD----------NV--KGCTHPVENGDKLSLGKDVNILALHT 109 (258)
T ss_pred echh----------cC--CCCCeEeCCCCEEEECCceEEEEEEC
Confidence 5432 01 12246789999999985 57776663
No 13
>PRK02113 putative hydrolase; Provisional
Probab=98.88 E-value=6.3e-09 Score=84.74 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=61.8
Q ss_pred cceEEEEEeCCeEEEEecCCCCC----CCCcCee-EEEcccCccc-cc--------------ccccCcchHHHH-HHHh-
Q 039213 53 GMNCMLVGNYDRYILIDAGDPGF----GFQYTNI-CIFIYNGEFN-IQ--------------QIDESPLDGKVF-DREA- 110 (156)
Q Consensus 53 g~Ncy~v~~~~~~iIID~G~~~~----~i~~~~~-aI~LTHgH~D-IG--------------pVY~t~~t~~ll-~~~~- 110 (156)
..+||+|+.++..+|||||.... ......+ +|||||.|.| ++ +||+++.+.+.+ ....
T Consensus 34 ~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~ 113 (252)
T PRK02113 34 LRTSALVETEGARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPY 113 (252)
T ss_pred eeeEEEEEECCeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCe
Confidence 35679999999999999996311 1122233 9999999999 76 689999888877 3211
Q ss_pred ---hhhhc--ccceEEEecCCCeEEeeceEEeeee
Q 039213 111 ---LEELS--KEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 111 ---~~~~~--~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
....+ .....+.+++|+.+++++++++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 148 (252)
T PRK02113 114 CFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLR 148 (252)
T ss_pred eeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEE
Confidence 11111 1124577889999999999998865
No 14
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.88 E-value=7e-09 Score=84.84 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred cceEEEEEeCCeEEEEecCCCCCC--CCcCee-EEEcccCccc-cc-------------ccccCcchHHHHHHHhhhhhc
Q 039213 53 GMNCMLVGNYDRYILIDAGDPGFG--FQYTNI-CIFIYNGEFN-IQ-------------QIDESPLDGKVFDREALEELS 115 (156)
Q Consensus 53 g~Ncy~v~~~~~~iIID~G~~~~~--i~~~~~-aI~LTHgH~D-IG-------------pVY~t~~t~~ll~~~~~~~~~ 115 (156)
...||+|+.++..+|||||..... +....+ +|||||.|.| ++ +||+++.+..+.+........
T Consensus 36 ~~~s~li~~~~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 115 (250)
T PRK11244 36 RPCSALIEFNGARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPGIL 115 (250)
T ss_pred ceeEEEEEECCCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcccc
Confidence 456999999999999999963211 222233 9999999999 86 678877654333211111110
Q ss_pred ccceEEEecCCCeEEeeceEEeeee
Q 039213 116 KEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 116 ~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
.....+++++.++++++++.+..
T Consensus 116 --~~~~~l~~~~~~~~~~~~I~~~~ 138 (250)
T PRK11244 116 --DFSHPLEPFEPFDLGGLQVTPLP 138 (250)
T ss_pred --ccccccCCCCCeeECCEEEEEEe
Confidence 10134788999999999998865
No 15
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.86 E-value=8.9e-09 Score=90.18 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=64.7
Q ss_pred ccceEEEEEeCCeEEEEecCCCCC--C--------CCcCee-EEEcccCccc-cc------------ccccCcchHHHHH
Q 039213 52 IGMNCMLVGNYDRYILIDAGDPGF--G--------FQYTNI-CIFIYNGEFN-IQ------------QIDESPLDGKVFD 107 (156)
Q Consensus 52 ig~Ncy~v~~~~~~iIID~G~~~~--~--------i~~~~~-aI~LTHgH~D-IG------------pVY~t~~t~~ll~ 107 (156)
...|||+|.. ++.+|||||.... . +....+ +||+||.|.| +| +||+++.+.+++.
T Consensus 31 ~~~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~ 109 (394)
T PRK11921 31 SSYNSYLIKD-EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLK 109 (394)
T ss_pred eEEEEEEEeC-CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHH
Confidence 4789999975 5689999996421 1 111123 9999999999 98 6999998888772
Q ss_pred HHhhhhhcccceEEEecCCCeEEeeceEEeeeeecccee
Q 039213 108 REALEELSKEGVTLVIKNGEMLGVSHLRNRRVLSNGFIS 146 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~~~~~~ 146 (156)
.. .........+++|+++++|+.++++++..+.|.
T Consensus 110 ~~----~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~ 144 (394)
T PRK11921 110 GH----YHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHW 144 (394)
T ss_pred HH----hCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCC
Confidence 11 111123467899999999999999997655443
No 16
>PRK04286 hypothetical protein; Provisional
Probab=98.78 E-value=3.6e-08 Score=83.86 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=57.7
Q ss_pred eEEEEccccCccc--ceEEEEEeCCeEEEEecCCCCCCC-----------------------CcCee-EEEcccCccc-c
Q 039213 41 LRVLPIGGLGEIG--MNCMLVGNYDRYILIDAGDPGFGF-----------------------QYTNI-CIFIYNGEFN-I 93 (156)
Q Consensus 41 i~~~~LGg~geig--~Ncy~v~~~~~~iIID~G~~~~~i-----------------------~~~~~-aI~LTHgH~D-I 93 (156)
|++.+||. |.-| .||++|+.++..||||||....+. ....+ +|||||.|.| |
T Consensus 1 m~~~~l~s-~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi 79 (298)
T PRK04286 1 MKIIPLAS-ESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHH 79 (298)
T ss_pred CEEEEEEe-CCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccC
Confidence 34555543 4433 699999999999999999642110 11112 9999999999 8
Q ss_pred c----c------------cccCcchHHH-----HH---H----HhhhhhcccceEEEecCCCeEEeeceEEeee
Q 039213 94 Q----Q------------IDESPLDGKV-----FD---R----EALEELSKEGVTLVIKNGEMLGVSHLRNRRV 139 (156)
Q Consensus 94 G----p------------VY~t~~t~~l-----l~---~----~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~ 139 (156)
+ + ||+++.+... ++ . .....+........+.+|+.+.+|++++++.
T Consensus 80 ~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~ 153 (298)
T PRK04286 80 TPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFS 153 (298)
T ss_pred CCccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEe
Confidence 7 3 2333222110 00 0 0001111111335678899999999999854
No 17
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.73 E-value=2.8e-08 Score=80.58 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred cceEEEEEeCCeEEEEecCCCCCC--CCcCee-EEEcccCccc-cc-------------ccccCcchHHHHHHHhhhhhc
Q 039213 53 GMNCMLVGNYDRYILIDAGDPGFG--FQYTNI-CIFIYNGEFN-IQ-------------QIDESPLDGKVFDREALEELS 115 (156)
Q Consensus 53 g~Ncy~v~~~~~~iIID~G~~~~~--i~~~~~-aI~LTHgH~D-IG-------------pVY~t~~t~~ll~~~~~~~~~ 115 (156)
...|++|+.++..+|||||..... +....+ +|||||.|.| ++ +||+++.+..+.+......+.
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 105 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGIL 105 (238)
T ss_pred cceEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCcccc
Confidence 456899999999999999964321 122233 9999999999 86 678887765433221111111
Q ss_pred ccceEEEecCCCeEEeeceEEeeee
Q 039213 116 KEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 116 ~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
.....+..++.++++++++.++.
T Consensus 106 --~~~~~~~~~~~~~~~~~~i~~~~ 128 (238)
T TIGR03307 106 --DFSKPLEAFEPFDLGGLRVTPLP 128 (238)
T ss_pred --cccccccCCceEEECCEEEEEEe
Confidence 11123778999999999999875
No 18
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.71 E-value=3.7e-08 Score=85.77 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=58.9
Q ss_pred ccce-EEEEEeC--CeEEEEecCCCCCCC------CcCeeEEEcccCccc-cc-----------ccccCcchHHHHHHHh
Q 039213 52 IGMN-CMLVGNY--DRYILIDAGDPGFGF------QYTNICIFIYNGEFN-IQ-----------QIDESPLDGKVFDREA 110 (156)
Q Consensus 52 ig~N-cy~v~~~--~~~iIID~G~~~~~i------~~~~~aI~LTHgH~D-IG-----------pVY~t~~t~~ll~~~~ 110 (156)
...| ||+|.++ +.+++||||....-+ ..+..+|++||.|.| +| +||+++.+.+.+
T Consensus 84 l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i---- 159 (329)
T PLN02398 84 LKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRI---- 159 (329)
T ss_pred eCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhc----
Confidence 4555 9999865 578999999532111 222339999999999 88 788887654433
Q ss_pred hhhhcccceEEEecCCCeEEeeceEEeeeeecc
Q 039213 111 LEELSKEGVTLVIKNGEMLGVSHLRNRRVLSNG 143 (156)
Q Consensus 111 ~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~~~ 143 (156)
+..+..+++|+++.+|+.+++.+...|
T Consensus 160 ------~~~d~~v~dGd~i~lgg~~l~vi~tPG 186 (329)
T PLN02398 160 ------PGIDIVLKDGDKWMFAGHEVLVMETPG 186 (329)
T ss_pred ------cCCcEEeCCCCEEEECCeEEEEEeCCC
Confidence 123468999999999998888877443
No 19
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.68 E-value=4.9e-08 Score=88.30 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=65.4
Q ss_pred ccceEEEEEeCCeEEEEecCCCCC--CC--------CcCee-EEEcccCccc-cc------------ccccCcchHHHHH
Q 039213 52 IGMNCMLVGNYDRYILIDAGDPGF--GF--------QYTNI-CIFIYNGEFN-IQ------------QIDESPLDGKVFD 107 (156)
Q Consensus 52 ig~Ncy~v~~~~~~iIID~G~~~~--~i--------~~~~~-aI~LTHgH~D-IG------------pVY~t~~t~~ll~ 107 (156)
..-|||+|.. ++.+|||+|.... .+ ....+ +||+||.|.| +| +||+|+.+..++.
T Consensus 33 ~t~NsYLI~~-~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~ 111 (479)
T PRK05452 33 SSYNSYLIRE-EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSIN 111 (479)
T ss_pred cEEEEEEEEC-CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHH
Confidence 3679999984 6789999996431 11 11123 9999999999 88 6999999888772
Q ss_pred HHhhhhhcccceEEEecCCCeEEeec-eEEeeeeeccceecc
Q 039213 108 REALEELSKEGVTLVIKNGEMLGVSH-LRNRRVLSNGFISLG 148 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~Gd~i~ig~-~~v~~~~~~~~~~~g 148 (156)
.. ... .......+++|+.+++|+ .+++++...+.|..|
T Consensus 112 ~~--~~~-~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pg 150 (479)
T PRK05452 112 GH--HHH-PEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPD 150 (479)
T ss_pred Hh--hcC-CcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCC
Confidence 11 111 112357899999999995 788888876545433
No 20
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.66 E-value=5e-08 Score=80.69 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=54.4
Q ss_pred ccce-EEEEEeCC-eEEEEecCCCCC------CCCcCeeEEEcccCccc-cc-----------ccccCcchHHHHHHHhh
Q 039213 52 IGMN-CMLVGNYD-RYILIDAGDPGF------GFQYTNICIFIYNGEFN-IQ-----------QIDESPLDGKVFDREAL 111 (156)
Q Consensus 52 ig~N-cy~v~~~~-~~iIID~G~~~~------~i~~~~~aI~LTHgH~D-IG-----------pVY~t~~t~~ll~~~~~ 111 (156)
...| ||++.+++ +++|||||.... ....+..+||+||.|.| +| +||+++.+
T Consensus 7 ~~dN~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~--------- 77 (248)
T TIGR03413 7 LSDNYIWLLHDPDGQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE--------- 77 (248)
T ss_pred cccEEEEEEEcCCCCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc---------
Confidence 3445 57777665 899999996421 11222339999999999 88 56666543
Q ss_pred hhhcccceEEEecCCCeEEeeceEEeeeeec
Q 039213 112 EELSKEGVTLVIKNGEMLGVSHLRNRRVLSN 142 (156)
Q Consensus 112 ~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~~ 142 (156)
.+ +..+..+++|+.+++|+..++.+...
T Consensus 78 -~~--~~~~~~v~~g~~~~~g~~~i~v~~tp 105 (248)
T TIGR03413 78 -RI--PGITHPVKDGDTVTLGGLEFEVLAVP 105 (248)
T ss_pred -cC--CCCcEEeCCCCEEEECCEEEEEEECC
Confidence 11 12346899999999999988887643
No 21
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.62 E-value=1.4e-08 Score=75.08 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=35.9
Q ss_pred CcccceEEEEEeCCeEEEEecCCCCCCC----------CcCee-EEEcccCccc-cc
Q 039213 50 GEIGMNCMLVGNYDRYILIDAGDPGFGF----------QYTNI-CIFIYNGEFN-IQ 94 (156)
Q Consensus 50 geig~Ncy~v~~~~~~iIID~G~~~~~i----------~~~~~-aI~LTHgH~D-IG 94 (156)
|+.+.|||+|+.++..+|||||...... ...++ +||+||+|.| +|
T Consensus 2 ~~~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~g 58 (194)
T PF00753_consen 2 GEGGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIG 58 (194)
T ss_dssp SSEEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHT
T ss_pred CCeeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccc
Confidence 4578999999999999999999854211 11223 9999999999 98
No 22
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.59 E-value=4.4e-08 Score=90.53 Aligned_cols=71 Identities=17% Similarity=0.370 Sum_probs=59.2
Q ss_pred CCCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCC-C------C----CCcCee-EEEcccCccc-cc---------
Q 039213 37 NGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPG-F------G----FQYTNI-CIFIYNGEFN-IQ--------- 94 (156)
Q Consensus 37 ~~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~-~------~----i~~~~~-aI~LTHgH~D-IG--------- 94 (156)
..+.+++++||+..|+|++|.+++..++.|++|||+.+ . + +..+.+ .+++||-|.| .+
T Consensus 10 ~~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkT 89 (668)
T KOG1137|consen 10 NSDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKT 89 (668)
T ss_pred CCCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeec
Confidence 46789999999999999999999999999999999843 1 1 122222 8899999999 77
Q ss_pred ----ccccCcchHHHHH
Q 039213 95 ----QIDESPLDGKVFD 107 (156)
Q Consensus 95 ----pVY~t~~t~~ll~ 107 (156)
.+|+|..|.+.+.
T Consensus 90 sf~grvfmth~TkAi~k 106 (668)
T KOG1137|consen 90 SFIGRVFMTHPTKAIYK 106 (668)
T ss_pred cccceeEEecchHHHHH
Confidence 7999999998873
No 23
>PRK02126 ribonuclease Z; Provisional
Probab=98.54 E-value=2.9e-07 Score=79.89 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=44.7
Q ss_pred CcccceEEEEEeC--CeEEEEecCCCCCCC---CcCee-EEEcccCccc-cc----------------ccccCcchHHHH
Q 039213 50 GEIGMNCMLVGNY--DRYILIDAGDPGFGF---QYTNI-CIFIYNGEFN-IQ----------------QIDESPLDGKVF 106 (156)
Q Consensus 50 geig~Ncy~v~~~--~~~iIID~G~~~~~i---~~~~~-aI~LTHgH~D-IG----------------pVY~t~~t~~ll 106 (156)
|..+.|||++..+ +..+|||||. ...+ ....+ +||+||.|.| |+ +||+++.+.+++
T Consensus 12 g~~~dn~~~l~~~~~~~~iLiD~G~-~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l 90 (334)
T PRK02126 12 GPFDDPGLYVDFLFERRALLFDLGD-LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQV 90 (334)
T ss_pred CCCCCcEEEEEECCCCeEEEEcCCC-HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHH
Confidence 4579999999975 7889999996 2222 11223 9999999999 76 799999999988
No 24
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.53 E-value=4.5e-07 Score=77.24 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=59.0
Q ss_pred cccceEEEEEeCC-eEEEEecCCCCC----C---------CCcCee-EEEcccCccc-cc-----------ccccCcchH
Q 039213 51 EIGMNCMLVGNYD-RYILIDAGDPGF----G---------FQYTNI-CIFIYNGEFN-IQ-----------QIDESPLDG 103 (156)
Q Consensus 51 eig~Ncy~v~~~~-~~iIID~G~~~~----~---------i~~~~~-aI~LTHgH~D-IG-----------pVY~t~~t~ 103 (156)
.-...||+|+.++ ..+|||||-.-. . +.+..+ +|||||.|.| |+ |||+++.+.
T Consensus 36 ~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~ 115 (302)
T PRK05184 36 PRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVL 115 (302)
T ss_pred cccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHH
Confidence 3456799998765 469999995210 0 112234 9999999999 76 899999998
Q ss_pred HHHHHH-h---h-hhhcccceEEEecCCCeEEee---ceEEeeee
Q 039213 104 KVFDRE-A---L-EELSKEGVTLVIKNGEMLGVS---HLRNRRVL 140 (156)
Q Consensus 104 ~ll~~~-~---~-~~~~~~~~~~~l~~Gd~i~ig---~~~v~~~~ 140 (156)
+.+... . . ... ..-..+.+.+++.++++ ++++.++.
T Consensus 116 ~~l~~~~~~f~~~~~~-~~~~~~~i~~~~~~~i~~~~~~~Vt~~~ 159 (302)
T PRK05184 116 EDLSTGFPIFNVLDHY-GGVQRRPIALDGPFAVPGLPGLRFTAFP 159 (302)
T ss_pred HHHHhcCCcccccccc-cceeeEEecCCCceEecCCCCcEEEEEE
Confidence 888321 0 0 001 11234678888888886 78887754
No 25
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.52 E-value=2.1e-07 Score=77.21 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=53.8
Q ss_pred ccceE-EEEEeC-CeEEEEecCCCCCCC-------CcCeeEEEcccCccc-cc------------ccccCcchHHHHHHH
Q 039213 52 IGMNC-MLVGNY-DRYILIDAGDPGFGF-------QYTNICIFIYNGEFN-IQ------------QIDESPLDGKVFDRE 109 (156)
Q Consensus 52 ig~Nc-y~v~~~-~~~iIID~G~~~~~i-------~~~~~aI~LTHgH~D-IG------------pVY~t~~t~~ll~~~ 109 (156)
...|+ |++..+ +.++|||||... .+ .....+|++||.|.| +| +||++..+..
T Consensus 9 ~~dNy~~li~~~~~~~ilIDpg~~~-~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~----- 82 (251)
T PRK10241 9 FDDNYIWVLNDEAGRCLIVDPGEAE-PVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD----- 82 (251)
T ss_pred ecceEEEEEEcCCCcEEEECCCChH-HHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc-----
Confidence 55665 787664 578999999642 21 222239999999999 88 4666543210
Q ss_pred hhhhhcccceEEEecCCCeEEeeceEEeeeeecc
Q 039213 110 ALEELSKEGVTLVIKNGEMLGVSHLRNRRVLSNG 143 (156)
Q Consensus 110 ~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~~~ 143 (156)
...++.+++|+.+.+|+..++.+...|
T Consensus 83 -------~~~~~~v~~g~~i~ig~~~~~vi~tPG 109 (251)
T PRK10241 83 -------KGTTQVVKDGETAFVLGHEFSVFATPG 109 (251)
T ss_pred -------cCCceEeCCCCEEEeCCcEEEEEEcCC
Confidence 123467889999999988887776444
No 26
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.51 E-value=2.5e-07 Score=77.94 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=59.2
Q ss_pred ccceEEEEEeC----CeEEEEecCCCCC------CCCcCee-EEEcccCccc-cc------------------ccccCcc
Q 039213 52 IGMNCMLVGNY----DRYILIDAGDPGF------GFQYTNI-CIFIYNGEFN-IQ------------------QIDESPL 101 (156)
Q Consensus 52 ig~Ncy~v~~~----~~~iIID~G~~~~------~i~~~~~-aI~LTHgH~D-IG------------------pVY~t~~ 101 (156)
-+.+||+|+.+ +..+|||||.... .+....+ +|||||.|.| ++ +||+++.
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~ 94 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 94 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence 35779999864 3679999996421 1122233 9999999999 76 6888888
Q ss_pred hHHHHH-HHhh-hh-hcccceEEEecCCCeEEeeceEEeeee
Q 039213 102 DGKVFD-REAL-EE-LSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 102 t~~ll~-~~~~-~~-~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
+.+.++ .... .. ...+...+.+.+++.++.+++++...-
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~ 136 (303)
T TIGR02649 95 IREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYP 136 (303)
T ss_pred HHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEE
Confidence 887773 2111 11 111234467778888888888887653
No 27
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.39 E-value=8.6e-07 Score=75.98 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred cceEEEEEeC-CeEEEEecCCCCC-------------CCCcCee-EEEcccCccc-cc-----------ccccCcchHHH
Q 039213 53 GMNCMLVGNY-DRYILIDAGDPGF-------------GFQYTNI-CIFIYNGEFN-IQ-----------QIDESPLDGKV 105 (156)
Q Consensus 53 g~Ncy~v~~~-~~~iIID~G~~~~-------------~i~~~~~-aI~LTHgH~D-IG-----------pVY~t~~t~~l 105 (156)
.+.|++|+.+ +.++|||||.... .+....+ ||||||.|.| |+ |||+++.+.+.
T Consensus 37 ~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~ 116 (302)
T TIGR02108 37 TQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQD 116 (302)
T ss_pred cccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHH
Confidence 4567888664 5689999996321 1223334 9999999999 75 89999999988
Q ss_pred HHHHhh-hhhcc-cceEEEecCCCeEEee-----ceEEeeee
Q 039213 106 FDREAL-EELSK-EGVTLVIKNGEMLGVS-----HLRNRRVL 140 (156)
Q Consensus 106 l~~~~~-~~~~~-~~~~~~l~~Gd~i~ig-----~~~v~~~~ 140 (156)
+..+.. ..+.. .-..+.+..++.+.++ +++|+++.
T Consensus 117 L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~ 158 (302)
T TIGR02108 117 LSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFA 158 (302)
T ss_pred HHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEE
Confidence 831110 11110 1112455666666553 36665544
No 28
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.23 E-value=4.3e-06 Score=64.02 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=50.5
Q ss_pred ccceEEEEEeCCeEEEEecCCCCCCCC--cCee-EEEcccCccc-ccccccCcchHHHHHHHhhhhhcccceEEEecCCC
Q 039213 52 IGMNCMLVGNYDRYILIDAGDPGFGFQ--YTNI-CIFIYNGEFN-IQQIDESPLDGKVFDREALEELSKEGVTLVIKNGE 127 (156)
Q Consensus 52 ig~Ncy~v~~~~~~iIID~G~~~~~i~--~~~~-aI~LTHgH~D-IGpVY~t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd 127 (156)
+|-+|++++.++..+++||......+. .... +|++||.|.| +.+-..... .....++..++
T Consensus 5 lgha~~~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~~~l~~~---------------~~~~~vv~~~~ 69 (163)
T PF13483_consen 5 LGHASFLIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDPETLKRL---------------DRDIHVVAPGG 69 (163)
T ss_dssp EETTEEEEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CCCCCCCH---------------HTSSEEE-TTE
T ss_pred EEeeEEEEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCChhHhhhc---------------ccccEEEccce
Confidence 588999999999999999996422221 1222 9999999999 774111111 12336888899
Q ss_pred eEEeeceEEeeeeecc
Q 039213 128 MLGVSHLRNRRVLSNG 143 (156)
Q Consensus 128 ~i~ig~~~v~~~~~~~ 143 (156)
.+++++++++.+....
T Consensus 70 ~~~~~~~~i~~v~~~~ 85 (163)
T PF13483_consen 70 EYRFGGFKITAVPAYH 85 (163)
T ss_dssp EEECTTEEEEEEEEEE
T ss_pred EEEEeeeEEEEEeeec
Confidence 9999999998887543
No 29
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.14 E-value=1.4e-05 Score=62.15 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=57.7
Q ss_pred CeEEEEccccCcccce-EEEEEeCC-eEEEEecCCCCC---CC-------CcCeeEEEcccCccc-cc------------
Q 039213 40 PLRVLPIGGLGEIGMN-CMLVGNYD-RYILIDAGDPGF---GF-------QYTNICIFIYNGEFN-IQ------------ 94 (156)
Q Consensus 40 ~i~~~~LGg~geig~N-cy~v~~~~-~~iIID~G~~~~---~i-------~~~~~aI~LTHgH~D-IG------------ 94 (156)
.+..++.+- .....| +|++..++ ..+|||+|.... .+ ..+..+|++||.|.| +|
T Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~ 89 (252)
T COG0491 11 GITAFPIGV-GPLSGNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAA 89 (252)
T ss_pred ccEEEEecC-cccccccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCc
Confidence 455666653 344544 55555555 799999998753 11 222239999999999 88
Q ss_pred ccccCcchHHHH-HHH--------hhhhhcccceEEEecCCCeEEeeceEEeeee
Q 039213 95 QIDESPLDGKVF-DRE--------ALEELSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 95 pVY~t~~t~~ll-~~~--------~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
++|.++....+. ... .....+.......+.+|+.+.+++..++-++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 144 (252)
T COG0491 90 PVIAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLH 144 (252)
T ss_pred eEEccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEE
Confidence 233333333333 110 0111111234456778999999985555544
No 30
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.07 E-value=1.3e-05 Score=61.45 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=51.2
Q ss_pred EEEEecCCCCC--C----C-----CcCee-EEEcccCccc-cc--------------ccccCcchHHHHH--HHhhh---
Q 039213 65 YILIDAGDPGF--G----F-----QYTNI-CIFIYNGEFN-IQ--------------QIDESPLDGKVFD--REALE--- 112 (156)
Q Consensus 65 ~iIID~G~~~~--~----i-----~~~~~-aI~LTHgH~D-IG--------------pVY~t~~t~~ll~--~~~~~--- 112 (156)
.+|||||.... . + .++.+ +|||||.|.| +. +||+++.+.+.+. .....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 81 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLY 81 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTC
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhccccccc
Confidence 68999998421 1 1 11233 9999999999 44 6999999999984 22211
Q ss_pred hhcccceEEEecCCCeEEeeceEEeeee
Q 039213 113 ELSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 113 ~~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
..........+.+++.+++++++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (194)
T PF12706_consen 82 PEEDNFDIIEISPGDEFEIGDFRITPFP 109 (194)
T ss_dssp CTTSGEEEEEECTTEEEEETTEEEEEEE
T ss_pred ccccceeEEEeccCceEEeceEEEEEEe
Confidence 1112234577889999999999998876
No 31
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.96 E-value=7.1e-05 Score=61.58 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCCCC-----------CcCee-EEEcccCccc-cc----------
Q 039213 38 GPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFGF-----------QYTNI-CIFIYNGEFN-IQ---------- 94 (156)
Q Consensus 38 ~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~i-----------~~~~~-aI~LTHgH~D-IG---------- 94 (156)
...|++.-+ |-+|++|+.++..++|||....... ..+.. +|++||.|.| ++
T Consensus 4 ~~~m~itwl------Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~ 77 (258)
T COG2220 4 AEDMKITWL------GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN 77 (258)
T ss_pred CcCceEEEe------cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC
Confidence 346777766 7899999999999999999864321 12222 9999999999 87
Q ss_pred --ccccCcchHHHHHHHhhhhhcccceEEEecCCCeEEeeceEEeeee
Q 039213 95 --QIDESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 95 --pVY~t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
++++.+.....+ ....... ......+..|+.++++++++.++.
T Consensus 78 ~~~~~~~p~~~~~~--~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~ 122 (258)
T COG2220 78 KAPVVVVPLGAGDL--LIRDGVE-AERVHELGWGDVIELGDLEITAVP 122 (258)
T ss_pred CCcEEEeHHHHHHH--HHhcCCC-cceEEeecCCceEEecCcEEEEEE
Confidence 222333332111 0011111 123456778999999998865554
No 32
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.90 E-value=1e-05 Score=68.84 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=38.2
Q ss_pred EEEEEeCCeEEEEecCCCCCCC-------Cc--Cee-EEEcccCccc-cc-------------ccccCcchHH
Q 039213 56 CMLVGNYDRYILIDAGDPGFGF-------QY--TNI-CIFIYNGEFN-IQ-------------QIDESPLDGK 104 (156)
Q Consensus 56 cy~v~~~~~~iIID~G~~~~~i-------~~--~~~-aI~LTHgH~D-IG-------------pVY~t~~t~~ 104 (156)
.++|+.++..||+|.|..+..+ ++ .++ +++|||+|+| +| |||+||....
T Consensus 24 S~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 24 SALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred EEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4578888899999999654333 22 233 9999999999 88 7999997766
No 33
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.82 E-value=0.00018 Score=63.36 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=60.3
Q ss_pred CCCeEEEEccccCcccceEEEEEe-CCeEEEEec----CCC-----------------CC-CC--------------CcC
Q 039213 38 GPPLRVLPIGGLGEIGMNCMLVGN-YDRYILIDA----GDP-----------------GF-GF--------------QYT 80 (156)
Q Consensus 38 ~~~i~~~~LGg~geig~Ncy~v~~-~~~~iIID~----G~~-----------------~~-~i--------------~~~ 80 (156)
...+++.-| |.++++|+. ++..|+||+ |.. +. .+ .++
T Consensus 35 ~~~~~~~wl------G~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~ 108 (355)
T PRK11709 35 PGTFAMWWL------GCTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIR 108 (355)
T ss_pred CCcEEEEEe------cceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCC
Confidence 356777777 678899987 588899995 310 00 00 112
Q ss_pred ee-EEEcccCccc-cc---------------ccccCcchHHHHHHHhhhhhcccceEEEecCCCeEEeeceEEeeeee
Q 039213 81 NI-CIFIYNGEFN-IQ---------------QIDESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVLS 141 (156)
Q Consensus 81 ~~-aI~LTHgH~D-IG---------------pVY~t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~ 141 (156)
.+ +|||||+|.| +. +++++....+++. ...++. .....++.|+.++++++++..+-+
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~---~~Gvp~-~rv~~v~~Ge~i~ig~v~It~lpa 182 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWI---GWGVPK-ERCIVVKPGDVVKVKDIKIHALDS 182 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHH---hcCCCc-ceEEEecCCCcEEECCEEEEEEec
Confidence 22 9999999999 84 1333333333221 112222 245789999999999999999876
No 34
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.77 E-value=7.2e-05 Score=66.90 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=65.4
Q ss_pred ccceEEEEEeCCeEEEEecCCCCCC--C--------CcCee-EEEcccCccc-cc------------ccccCcchHHHHH
Q 039213 52 IGMNCMLVGNYDRYILIDAGDPGFG--F--------QYTNI-CIFIYNGEFN-IQ------------QIDESPLDGKVFD 107 (156)
Q Consensus 52 ig~Ncy~v~~~~~~iIID~G~~~~~--i--------~~~~~-aI~LTHgH~D-IG------------pVY~t~~t~~ll~ 107 (156)
..-|.|+|. +++.+|||++.+.+. + ....+ +|+++|.--| .| +|+||...+.+|.
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~ 112 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLK 112 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHH
Confidence 789999999 999999999986521 1 11122 9999999999 88 7899998888883
Q ss_pred HHhhhhhcccceEEEecCCCeEEeeceEEeeeee
Q 039213 108 REALEELSKEGVTLVIKNGEMLGVSHLRNRRVLS 141 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~ 141 (156)
.. ...+.....++.||++++|+.+++|+--
T Consensus 113 ~~----~~~~~~~~ivk~Gd~ldlGg~tL~Fi~a 142 (388)
T COG0426 113 GF----YHDPEWFKIVKTGDTLDLGGHTLKFIPA 142 (388)
T ss_pred Hh----cCCccceeecCCCCEeccCCcEEEEEeC
Confidence 22 1111116789999999999999999864
No 35
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.71 E-value=0.00016 Score=61.76 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=47.8
Q ss_pred CeEEEEccccCc-----ccceEEEEEeCCeEEEEecCCCC------CCCCcCee-EEEcccCccc-cc------------
Q 039213 40 PLRVLPIGGLGE-----IGMNCMLVGNYDRYILIDAGDPG------FGFQYTNI-CIFIYNGEFN-IQ------------ 94 (156)
Q Consensus 40 ~i~~~~LGg~ge-----ig~Ncy~v~~~~~~iIID~G~~~------~~i~~~~~-aI~LTHgH~D-IG------------ 94 (156)
+|++.+||-.|. -....|+|..+++.++||||--. ..+...++ +|||||.|.| |.
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~ 80 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFR 80 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhcc
Confidence 366777765454 45568888888899999999521 11222233 9999999999 66
Q ss_pred ------ccccCcchHHHH
Q 039213 95 ------QIDESPLDGKVF 106 (156)
Q Consensus 95 ------pVY~t~~t~~ll 106 (156)
+||..+..++.+
T Consensus 81 ~~~~~l~iygP~g~~~~~ 98 (292)
T COG1234 81 GRREPLKIYGPPGIKEFV 98 (292)
T ss_pred CCCCceeEECCcchhhhh
Confidence 588888887777
No 36
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.65 E-value=0.00027 Score=66.17 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=57.6
Q ss_pred CCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCC--CC------------CcCee-EEEcccCccc-cc--------
Q 039213 39 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGF--GF------------QYTNI-CIFIYNGEFN-IQ-------- 94 (156)
Q Consensus 39 ~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~--~i------------~~~~~-aI~LTHgH~D-IG-------- 94 (156)
-++.++-+| ++.|++|+.+++.++||+|..-. +. ++. + ++++||.|.| +|
T Consensus 440 ~~v~~lDVG-----qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 440 WQVDMLDVG-----QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred EEEEEEecC-----CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh
Confidence 367777776 66799999999999999996311 10 233 3 9999999999 98
Q ss_pred ----ccccCcchHHHHHHHhhhhhcccceEEEecCCCeEEeeceEEeeee
Q 039213 95 ----QIDESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVL 140 (156)
Q Consensus 95 ----pVY~t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~ 140 (156)
.||.+... . ........++.|+.+++++++++.+.
T Consensus 514 ~~v~~i~~~~~~------~-----~~~~~~~~~~~G~~~~~~~~~~~vL~ 552 (662)
T TIGR00361 514 HPVKRLVIPKGF------V-----EEGVAIEECKRGDVWQWQGLQFHVLS 552 (662)
T ss_pred CCccEEEeccch------h-----hCCCceEecCCCCEEeECCEEEEEEC
Confidence 23332210 0 00112346788999999888888775
No 37
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=97.61 E-value=0.00019 Score=61.39 Aligned_cols=87 Identities=23% Similarity=0.304 Sum_probs=52.5
Q ss_pred cceEEEEEeCC---eEEEEecCCCCCCC---------CcCeeEEEcccCccc-cc---ccccC-cchHHHHHHHhhhhhc
Q 039213 53 GMNCMLVGNYD---RYILIDAGDPGFGF---------QYTNICIFIYNGEFN-IQ---QIDES-PLDGKVFDREALEELS 115 (156)
Q Consensus 53 g~Ncy~v~~~~---~~iIID~G~~~~~i---------~~~~~aI~LTHgH~D-IG---pVY~t-~~t~~ll~~~~~~~~~ 115 (156)
+.|||+|..+. .+.++||+.+..-+ .....+||.||-|.| +| .|.-. +.+..++. ...-.
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g---~~~~r 88 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIG---GADDR 88 (265)
T ss_pred CceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEec---CChhc
Confidence 78999999954 44666666543111 122239999999999 88 11111 11222220 00011
Q ss_pred ccceEEEecCCCeEEeeceEEeeeeec
Q 039213 116 KEGVTLVIKNGEMLGVSHLRNRRVLSN 142 (156)
Q Consensus 116 ~~~~~~~l~~Gd~i~ig~~~v~~~~~~ 142 (156)
.+...+.++.||++.+++.+|+.+..-
T Consensus 89 ~~~i~~~~~~~e~~~~~g~~v~~l~TP 115 (265)
T KOG0813|consen 89 IPGITRGLKDGETVTVGGLEVRCLHTP 115 (265)
T ss_pred CccccccCCCCcEEEECCEEEEEEeCC
Confidence 223445689999999999999998744
No 38
>PRK11539 ComEC family competence protein; Provisional
Probab=97.28 E-value=0.00046 Score=65.69 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=37.0
Q ss_pred CeEEEEccccCcccceEEEEEeCCeEEEEecCCCC--C----CC--------CcCeeEEEcccCccc-cc
Q 039213 40 PLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPG--F----GF--------QYTNICIFIYNGEFN-IQ 94 (156)
Q Consensus 40 ~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~--~----~i--------~~~~~aI~LTHgH~D-IG 94 (156)
++.++-+| ++.|.+|+.+++.+|||+|..- . .. ++..-+|++||.|.| +|
T Consensus 502 ~v~~lDVG-----qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~G 566 (755)
T PRK11539 502 RVDMLDVG-----HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRG 566 (755)
T ss_pred EEEEEEcc-----CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCC
Confidence 56677775 5679999999999999999631 1 11 222119999999999 88
No 39
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.17 E-value=0.00028 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.7
Q ss_pred EEEcccCccc-cc-----------ccccCcchHHHH
Q 039213 83 CIFIYNGEFN-IQ-----------QIDESPLDGKVF 106 (156)
Q Consensus 83 aI~LTHgH~D-IG-----------pVY~t~~t~~ll 106 (156)
|||+||.|.| |. ++|+++.+....
T Consensus 65 ai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~ 100 (269)
T COG1235 65 AILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRAS 100 (269)
T ss_pred eEEEecccHHhhcChHHHHHHhcCCcccccceeccc
Confidence 9999999999 66 677776555554
No 40
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.10 E-value=0.00095 Score=62.43 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCCCcCCC--C--CCCCcccccHHHHhhhhcccCCCCCCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCCCC-
Q 039213 3 ESKVPRRRTG--R--TEGPRKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFGF- 77 (156)
Q Consensus 3 ~~~~~~~r~~--~--~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~i- 77 (156)
...++++|-+ | +|++.- ..-+-....++......+.|++.+++ +|.+++||.++..=....|+|.|......
T Consensus 111 dyvrvs~~s~~~~Ly~e~dl~--~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~sreeD 187 (668)
T KOG1137|consen 111 DYVRVSNRSGDDRLYTEGDLM--ESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDYSREED 187 (668)
T ss_pred cceEeeeccCccccccchhHH--HhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEeccccchhhc
Confidence 3567778877 5 555432 22222234455555567789999999 69999999998887888999999832211
Q ss_pred ------CcCe-----------eEEEcccCccc-cc------------------ccccCcchHHHH
Q 039213 78 ------QYTN-----------ICIFIYNGEFN-IQ------------------QIDESPLDGKVF 106 (156)
Q Consensus 78 ------~~~~-----------~aI~LTHgH~D-IG------------------pVY~t~~t~~ll 106 (156)
..|+ .|+.++|.|.| .| |||+...+.+++
T Consensus 188 rhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELl 252 (668)
T KOG1137|consen 188 RHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELL 252 (668)
T ss_pred ccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHH
Confidence 1111 19999999999 98 999999999988
No 41
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.99 E-value=0.0034 Score=54.18 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred eEEEEccccCccc--ceEEEEEeCCeEEEEecCCC--CCCCCcCee----------------------EEEcccCccc-c
Q 039213 41 LRVLPIGGLGEIG--MNCMLVGNYDRYILIDAGDP--GFGFQYTNI----------------------CIFIYNGEFN-I 93 (156)
Q Consensus 41 i~~~~LGg~geig--~Ncy~v~~~~~~iIID~G~~--~~~i~~~~~----------------------aI~LTHgH~D-I 93 (156)
|++.+++- .+.| .=|.+|+..+-.|+||||.. ..++.+|.- -|.|||-|.| .
T Consensus 1 MkV~Pla~-eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHh 79 (304)
T COG2248 1 MKVIPLAS-ESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHH 79 (304)
T ss_pred Cceeeccc-cccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccC
Confidence 45555542 4444 44899999999999999984 334433320 8999999999 8
Q ss_pred cc----cccCc--chHHHH-HH-----------H-----hh----hhhcccceEEEecCCCeEEeeceEEeee
Q 039213 94 QQ----IDESP--LDGKVF-DR-----------E-----AL----EELSKEGVTLVIKNGEMLGVSHLRNRRV 139 (156)
Q Consensus 94 Gp----VY~t~--~t~~ll-~~-----------~-----~~----~~~~~~~~~~~l~~Gd~i~ig~~~v~~~ 139 (156)
.| ||... ...++. ++ | .. ..+..-+....+.+|.+++||++.++|-
T Consensus 80 tPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS 152 (304)
T COG2248 80 TPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFS 152 (304)
T ss_pred CccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEec
Confidence 85 55441 112222 10 0 01 2222234567888999999999998874
No 42
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.65 E-value=0.0065 Score=50.29 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=53.4
Q ss_pred ceEEEEEe--CCeEEEEecCCCCCC--------CCcCeeEEEcccCccc-ccccccCcchHHHH-H-HHhhhhhcccceE
Q 039213 54 MNCMLVGN--YDRYILIDAGDPGFG--------FQYTNICIFIYNGEFN-IQQIDESPLDGKVF-D-REALEELSKEGVT 120 (156)
Q Consensus 54 ~Ncy~v~~--~~~~iIID~G~~~~~--------i~~~~~aI~LTHgH~D-IGpVY~t~~t~~ll-~-~~~~~~~~~~~~~ 120 (156)
+-.|++.+ +++++||||=....+ +++..++-+-||.|.| |. .|..-+.++ . +.-.+......++
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiT---Gtg~Lkt~~pg~kSVis~~SGakAD 97 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHIT---GTGLLKTLLPGCKSVISSASGAKAD 97 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeeccccc---ccchHHHhcccHHHHhhhccccccc
Confidence 44577776 478999999875321 2333448899999999 66 222222222 1 0001222233467
Q ss_pred EEecCCCeEEeeceEEeeeee
Q 039213 121 LVIKNGEMLGVSHLRNRRVLS 141 (156)
Q Consensus 121 ~~l~~Gd~i~ig~~~v~~~~~ 141 (156)
..+++||.|+||++.++..-+
T Consensus 98 ~~l~~Gd~i~~G~~~le~rat 118 (237)
T KOG0814|consen 98 LHLEDGDIIEIGGLKLEVRAT 118 (237)
T ss_pred cccCCCCEEEEccEEEEEecC
Confidence 899999999999998876553
No 43
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=96.64 E-value=0.0039 Score=59.47 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=46.9
Q ss_pred eEEEEccccCcccceEEEEEeCCeEEEEecCCCCC-CC--------CcCee-EEEcccCccc-cc-------------cc
Q 039213 41 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGF-GF--------QYTNI-CIFIYNGEFN-IQ-------------QI 96 (156)
Q Consensus 41 i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~-~i--------~~~~~-aI~LTHgH~D-IG-------------pV 96 (156)
++..++-|..+=+.=||+|+.|+-.|+||||++.. .. .++.+ ||+|||--.- +| ||
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPV 81 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceE
Confidence 34455555566688899999999999999999642 11 22222 9999998766 88 89
Q ss_pred ccCcchHHH
Q 039213 97 DESPLDGKV 105 (156)
Q Consensus 97 Y~t~~t~~l 105 (156)
|+|-....|
T Consensus 82 YAT~PV~~m 90 (764)
T KOG1135|consen 82 YATLPVIKM 90 (764)
T ss_pred EEecchhhh
Confidence 998665544
No 44
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.30 E-value=0.015 Score=50.31 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=58.2
Q ss_pred CeEEEEccccCcccceEEEEEeCCeEEEEecCCC-CCCC--------CcCee-EEEcccCccc-cc------------cc
Q 039213 40 PLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDP-GFGF--------QYTNI-CIFIYNGEFN-IQ------------QI 96 (156)
Q Consensus 40 ~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~-~~~i--------~~~~~-aI~LTHgH~D-IG------------pV 96 (156)
++.++-+|+ +-..+++.++..+++|.|.. +... ++..+ .++|||.|.| || .+
T Consensus 45 ~~~~lDvGq-----g~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~ 119 (293)
T COG2333 45 KVHMLDVGQ-----GLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPEL 119 (293)
T ss_pred eEEEEEcCC-----CeEEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcE
Confidence 677777874 44577888888999999983 2222 22222 9999999999 99 34
Q ss_pred ccCcchHHHHHHHhhhhhcccceEEEecCCCeEEeeceEEeeeee
Q 039213 97 DESPLDGKVFDREALEELSKEGVTLVIKNGEMLGVSHLRNRRVLS 141 (156)
Q Consensus 97 Y~t~~t~~ll~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~~~~ 141 (156)
|+......-.... ...........+.|+.+++++...+.+..
T Consensus 120 ~i~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~~~~~f~vl~P 161 (293)
T COG2333 120 WIYAGSDSTSTFV---LRDAGIPVRSCKAGDSWQWGGVVFQVLSP 161 (293)
T ss_pred EEeCCCCccchhh---hhhcCCceeccccCceEEECCeEEEEEcC
Confidence 4433322211000 00111233566778999998888777763
No 45
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=95.89 E-value=0.0043 Score=53.37 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=32.0
Q ss_pred eCCeEEEEe-cCCCCCCCC---cCee-EEEcccCccc-cc-------------------ccccCcchHHHH
Q 039213 61 NYDRYILID-AGDPGFGFQ---YTNI-CIFIYNGEFN-IQ-------------------QIDESPLDGKVF 106 (156)
Q Consensus 61 ~~~~~iIID-~G~~~~~i~---~~~~-aI~LTHgH~D-IG-------------------pVY~t~~t~~ll 106 (156)
.....+++| +|.-..... +..+ .|||||+|.| +| .||..+.+.+.+
T Consensus 16 ~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v 86 (277)
T TIGR02650 16 YSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE 86 (277)
T ss_pred ECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH
Confidence 345669999 765322221 1122 9999999999 88 389988877777
No 46
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=94.79 E-value=0.042 Score=48.41 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=42.0
Q ss_pred cccCcccceEEEEEeC--CeEEEEecCCC--C-------------CCCCcC------------------ee-EEEcccCc
Q 039213 47 GGLGEIGMNCMLVGNY--DRYILIDAGDP--G-------------FGFQYT------------------NI-CIFIYNGE 90 (156)
Q Consensus 47 Gg~geig~Ncy~v~~~--~~~iIID~G~~--~-------------~~i~~~------------------~~-aI~LTHgH 90 (156)
||..|=..++|++... +..+-+|+|.- + ..+..+ .+ +.||||+|
T Consensus 10 GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~H 89 (335)
T PF02112_consen 10 GGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPH 89 (335)
T ss_pred CCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCc
Confidence 4444545678888875 67799999951 0 011111 01 99999999
Q ss_pred cc-cc-----------------ccccCcchHHHH
Q 039213 91 FN-IQ-----------------QIDESPLDGKVF 106 (156)
Q Consensus 91 ~D-IG-----------------pVY~t~~t~~ll 106 (156)
+| |+ +||+.+.|.+.+
T Consensus 90 LDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~al 123 (335)
T PF02112_consen 90 LDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEAL 123 (335)
T ss_pred hhhHHHHHhcCcccccccCCCCcEEECHHHHHHH
Confidence 99 76 589999999998
No 47
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=90.32 E-value=0.36 Score=44.67 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=34.2
Q ss_pred EEEcccCccc--cc--------ccccCcchHHHH-HHHhhhhhcccceEEEecCCCeEEeeceEEee
Q 039213 83 CIFIYNGEFN--IQ--------QIDESPLDGKVF-DREALEELSKEGVTLVIKNGEMLGVSHLRNRR 138 (156)
Q Consensus 83 aI~LTHgH~D--IG--------pVY~t~~t~~ll-~~~~~~~~~~~~~~~~l~~Gd~i~ig~~~v~~ 138 (156)
+-||||.|.| +| |+||++.|+.++ .... ++. ...+.+.-++.+.+-++.|.-
T Consensus 115 ~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~---v~~-~~i~~l~l~~~~~i~~~~vt~ 177 (481)
T KOG1361|consen 115 AYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVS---VTK-QSIQALDLNQPLEIPGIQVTL 177 (481)
T ss_pred eeeeecccccccccccccccCCcccccccchhhhhhhcc---cCh-hhceeecCCCceeecceEEEE
Confidence 8999999999 88 599999999999 3221 111 122445555555555544443
No 48
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.24 E-value=0.76 Score=43.23 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=41.5
Q ss_pred hhhhcccCCCCCCCeEEEEccccCcccceEEEEEeCCeEEEEecCCCCCC------------CCcCeeEEEcccCccc-c
Q 039213 27 RKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGDPGFG------------FQYTNICIFIYNGEFN-I 93 (156)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~LGg~geig~Ncy~v~~~~~~iIID~G~~~~~------------i~~~~~aI~LTHgH~D-I 93 (156)
..++--||+..+ ++-+-| --=.|..+|+-+..+|||||=..... -+.|..+|+-||.|.| .
T Consensus 105 n~~~GLfkVtd~----iYQVRG--~DisNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHf 178 (655)
T COG2015 105 NAKHGLFKVTDG----IYQVRG--FDISNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHF 178 (655)
T ss_pred hhhcCeeeeccc----eeEeec--ccccceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeeccccccc
Confidence 355666666222 333332 12379999999999999999763311 1344459999999999 8
Q ss_pred c
Q 039213 94 Q 94 (156)
Q Consensus 94 G 94 (156)
|
T Consensus 179 G 179 (655)
T COG2015 179 G 179 (655)
T ss_pred C
Confidence 8
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=87.14 E-value=0.4 Score=39.67 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=31.8
Q ss_pred ccCcccceEEEEEeCCeEEEEecCCCC-CCC-----CcCeeEEEcccCccc-cc---------ccccCcchHHHH
Q 039213 48 GLGEIGMNCMLVGNYDRYILIDAGDPG-FGF-----QYTNICIFIYNGEFN-IQ---------QIDESPLDGKVF 106 (156)
Q Consensus 48 g~geig~Ncy~v~~~~~~iIID~G~~~-~~i-----~~~~~aI~LTHgH~D-IG---------pVY~t~~t~~ll 106 (156)
....++-|||++-..+..|+|||=--. ... .-...+|+|||.-.= -+ +||++..+++..
T Consensus 17 ~~~n~dfng~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~i~~p~~d~~~~ 91 (199)
T PF14597_consen 17 EARNLDFNGHAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAKIYGPAADAAQF 91 (199)
T ss_dssp TTTTEEEEEEEE--TT--EEES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--EEEEEGGGCCC-
T ss_pred hhhccCceeEEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCeeeccHHHHhhC
Confidence 345678899999999999999984211 000 001129999998322 22 899999887555
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=86.47 E-value=1.3 Score=30.24 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=30.3
Q ss_pred eEEEEEeCCeEEEE-ecCCCC------CCCCcCee-EEEcccCc-cc-cc
Q 039213 55 NCMLVGNYDRYILI-DAGDPG------FGFQYTNI-CIFIYNGE-FN-IQ 94 (156)
Q Consensus 55 Ncy~v~~~~~~iII-D~G~~~------~~i~~~~~-aI~LTHgH-~D-IG 94 (156)
-|.+|..+.+.+|+ +||--- .++.+..+ +||||+.+ .| +|
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~G 62 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIG 62 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccC
Confidence 69999999999999 999632 22333333 99999999 87 75
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=83.54 E-value=0.53 Score=41.43 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.7
Q ss_pred EEEcccCccc-cc---------------ccccCcchHHHH
Q 039213 83 CIFIYNGEFN-IQ---------------QIDESPLDGKVF 106 (156)
Q Consensus 83 aI~LTHgH~D-IG---------------pVY~t~~t~~ll 106 (156)
--+|||+|+| |. .||+.+.|.+++
T Consensus 115 ~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL 154 (356)
T COG5212 115 SYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVL 154 (356)
T ss_pred heEeccccccchhceeecCccccccCCceEEechhHHHHH
Confidence 6789999999 76 599999999999
No 52
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=81.97 E-value=0.35 Score=46.71 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCeEEEEccccCcccc------eEEEEEeCCeE-EEEecCCCC-----CCCCc-------Cee-EEEcccCccc--cc
Q 039213 39 PPLRVLPIGGLGEIGM------NCMLVGNYDRY-ILIDAGDPG-----FGFQY-------TNI-CIFIYNGEFN--IQ 94 (156)
Q Consensus 39 ~~i~~~~LGg~geig~------Ncy~v~~~~~~-iIID~G~~~-----~~i~~-------~~~-aI~LTHgH~D--IG 94 (156)
..+++.+||= |.--- +.|+|..+... |++|||-.. ..|+. ..+ ||+|||.|.| .|
T Consensus 441 ~~~eIi~LGT-GSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~G 517 (746)
T KOG2121|consen 441 KDPEIIFLGT-GSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLG 517 (746)
T ss_pred CCcEEEEecC-CccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhccccccc
Confidence 4688999974 44332 35677776555 999999632 11221 112 9999999999 66
No 53
>PTZ00334 trans-sialidase; Provisional
Probab=34.73 E-value=26 Score=34.52 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.5
Q ss_pred CCCCCcCCCC-CCCCcccccHHHH
Q 039213 4 SKVPRRRTGR-TEGPRKSMEDSVQ 26 (156)
Q Consensus 4 ~~~~~~r~~~-~e~~~~~~~~~~~ 26 (156)
|..-|||+|| -|-.|++|++++-
T Consensus 21 GSSGRRREGrESEpQRPNMSRrvF 44 (780)
T PTZ00334 21 GSSGRRREGRESEPQRPNMSRRVF 44 (780)
T ss_pred CCCCCcCCCCCCCCCCCCcchhhH
Confidence 4456899999 8888999999985
No 54
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=70 Score=28.25 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=29.8
Q ss_pred ccceEEEEEeCCeEEEEecCCCC-CCCCcC--ee-EEEcccCccc-cc
Q 039213 52 IGMNCMLVGNYDRYILIDAGDPG-FGFQYT--NI-CIFIYNGEFN-IQ 94 (156)
Q Consensus 52 ig~Ncy~v~~~~~~iIID~G~~~-~~i~~~--~~-aI~LTHgH~D-IG 94 (156)
...+-.++.+.+..+++|.|.+. ....++ .+ .+++||+|.+ +|
T Consensus 93 ~~~~~tl~~d~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlg 140 (302)
T KOG4736|consen 93 LQGQITLVVDGGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLG 140 (302)
T ss_pred hhcccceeecCCceEEEecCCchhhhcCcChhhcceeEEeccCccccc
Confidence 34455666677888999999871 112221 22 9999999999 88
Done!