BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039216
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLES------FKVIFFERDVSMHI--------- 292
G E++ F + + I++T D V F S K +F + +V+ +
Sbjct: 14 GTENLYFQSMPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYG 73
Query: 293 -EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRS 345
+F++ L+K+ + VP R+F+ G +IGGA + LH++GKL PL + +S
Sbjct: 74 NQFQDALYKMTGERTVP-RIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKS 126
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 293 EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRS------D 346
+F++ L+K+ + VP R+F+ G +IGGA + LH++GKL PL + +S
Sbjct: 67 QFQDALYKMTGERTVP-RIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEFQS 125
Query: 347 GPCDG 351
GP G
Sbjct: 126 GPSSG 130
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 293 EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRS 345
+F++ L+K+ + VP R+F+ G +IGGA + LH++GKL PL + +S
Sbjct: 89 QFQDALYKMTGERTVP-RIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKS 140
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 269 CSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328
C + LL S V F E + + REE+ K + P++FI ++IGG ++ L
Sbjct: 14 CHRAKALLSSKGVSFQELPIDGNAAKREEMIK-RSGRTTVPQIFIDAQHIGGYDDLYALD 72
Query: 329 EQGKLRPLF 337
+G L PL
Sbjct: 73 ARGGLDPLL 81
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 246 PGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCK 305
PG + +I YT R C R LL+ V + + D S + R+E+ + + +
Sbjct: 2 PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKYTDIDASTSL--RQEMVQRANGR 53
Query: 306 AVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGI 340
P++FI ++GG ++ L +GKL L +
Sbjct: 54 NTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQDV 88
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRSDG 347
P +FI G++IGG + + L+ +G+L PL +S G
Sbjct: 74 PNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANAKKSQG 112
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 246 PGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCK 305
PG VI YT R C+ + LL F E D S E R E+ + +
Sbjct: 2 PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQE-RSGR 54
Query: 306 AVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLF 337
P++FI ++GG ++ L ++GKL L
Sbjct: 55 NTFPQIFIGSVHVGGCDDLYALEDEGKLDSLL 86
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 283 FFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKL 333
E D H E +E K++ + P L + G GG E+ LH QGKL
Sbjct: 46 IIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKL 96
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 275 LLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLR 334
LL S V F E + + REE+ K + P++FI ++IGG ++ L +G L
Sbjct: 20 LLSSKGVSFQELPIDGNAAKREEMIK-RSGRTTVPQIFIDAQHIGGYDDLYALDARGGLD 78
Query: 335 PLF 337
PL
Sbjct: 79 PLL 81
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 280 KVIFFERD-VSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGK----LR 334
K + E D +S E ++ L ++ K VP ++I G++IGG +++ TL + GK L+
Sbjct: 50 KALVLELDEMSNGSEIQDALEEISGQKTVP-NVYINGKHIGGNSDLETLKKNGKLAEILK 108
Query: 335 PLF 337
P+F
Sbjct: 109 PVF 111
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 280 KVIFFERD-VSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGK----LR 334
K + E D +S E ++ L ++ K VP ++I G++IGG +++ TL + GK L+
Sbjct: 67 KALVLELDEMSNGSEIQDALEEISGQKTVP-NVYINGKHIGGNSDLETLKKNGKLAEILK 125
Query: 335 PLF 337
P+F
Sbjct: 126 PVF 128
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 280 KVIFFERD-VSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGK----LR 334
K + E D +S E ++ L ++ K VP ++I G++IGG +++ TL + GK L+
Sbjct: 47 KALVLELDEMSNGSEIQDALEEISGQKTVP-NVYINGKHIGGNSDLETLKKNGKLAEILK 105
Query: 335 PLF 337
P+F
Sbjct: 106 PVF 108
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLFDG 339
P+L++KG +GG V L E G+L P+ G
Sbjct: 74 PQLYVKGELVGGLDIVKELKENGELLPILRG 104
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLF 337
P +FI G+ IGG V+ H++ +L PL
Sbjct: 75 PNVFIGGKQIGGCDTVVEKHQRNELLPLL 103
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLF 337
P +FI G+ IGG V+ H++ +L PL
Sbjct: 76 PNVFIGGKQIGGCDTVVEKHQRNELLPLL 104
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLF 337
P++FI ++IGG ++ L GKL PL
Sbjct: 69 PQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 243 KCPPGGDESVIFYTTTLRGIRKTFEDCSSVRF---LLESFKVIFFERDVSMHIEFREELW 299
K PG + V+F T RKT E S + F LLE F I D + E ++ L
Sbjct: 8 KIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEGLLE-FVDITATSDTN---EIQDYLQ 61
Query: 300 KVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKL 333
++ + VP R+FI IGG ++ ++H++G+L
Sbjct: 62 QLTGARTVP-RVFIGKECIGGCTDLESMHKRGEL 94
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 275 LLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLR 334
+L S V + D+ E R+ L K P+L+++G +GG V L + G+L
Sbjct: 39 ILNSTGVEYETFDILEDEEVRQGL-KTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELL 97
Query: 335 PLFDGIPIDRSDGPCDG 351
P+ G GP G
Sbjct: 98 PILKG-----ESGPSSG 109
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 112 IGPPTKPKDSVSCNSKENVELSKKVEPLAEI--DVSSFRRPDMNS 154
+ P P D+ +E V ++ V PLA + D +S RR D++S
Sbjct: 255 LSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSS 299
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 112 IGPPTKPKDSVSCNSKENVELSKKVEPLAEI--DVSSFRRPDMNS 154
+ P P D+ +E V ++ V PLA + D +S RR D++S
Sbjct: 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSS 299
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 283 FFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQGKLRPLF 337
F D+ + + R EL K + P +L++ G +GG V+ ++++G+L+ L
Sbjct: 67 FAYVDILQNPDIRAELPKYANWPTFP-QLWVDGELVGGCDIVIEMYQRGELQQLI 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,354,286
Number of Sequences: 62578
Number of extensions: 337678
Number of successful extensions: 678
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 25
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)