Query 039216
Match_columns 394
No_of_seqs 223 out of 1445
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 2.5E-52 5.5E-57 401.1 13.8 159 235-394 116-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 3E-49 6.6E-54 350.9 16.2 140 251-390 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 9.2E-23 2E-27 168.8 9.2 88 251-338 1-91 (92)
4 TIGR00365 monothiol glutaredox 99.8 4.9E-20 1.1E-24 152.3 11.8 88 248-337 10-97 (97)
5 TIGR02189 GlrX-like_plant Glut 99.8 7E-20 1.5E-24 151.9 10.5 87 248-341 6-95 (99)
6 PRK10824 glutaredoxin-4; Provi 99.8 6.3E-20 1.4E-24 157.9 10.6 92 248-341 13-104 (115)
7 PHA03050 glutaredoxin; Provisi 99.8 1.7E-19 3.7E-24 152.5 10.9 88 248-342 11-104 (108)
8 TIGR02181 GRX_bact Glutaredoxi 99.8 7.6E-19 1.6E-23 136.7 9.8 79 252-337 1-79 (79)
9 cd03028 GRX_PICOT_like Glutare 99.8 9.5E-19 2.1E-23 141.8 10.7 85 248-334 6-90 (90)
10 PRK10638 glutaredoxin 3; Provi 99.8 2.5E-18 5.3E-23 136.3 10.7 81 251-338 3-83 (83)
11 cd03418 GRX_GRXb_1_3_like Glut 99.7 2.4E-17 5.1E-22 126.1 10.6 75 251-331 1-75 (75)
12 KOG1752 Glutaredoxin and relat 99.7 2.3E-17 4.9E-22 140.1 10.1 87 248-341 12-101 (104)
13 cd03027 GRX_DEP Glutaredoxin ( 99.7 3.2E-17 7E-22 126.6 9.5 73 250-329 1-73 (73)
14 PTZ00062 glutaredoxin; Provisi 99.7 6.8E-17 1.5E-21 150.8 10.9 90 248-339 111-200 (204)
15 TIGR02180 GRX_euk Glutaredoxin 99.7 5E-16 1.1E-20 119.9 9.4 79 252-337 1-84 (84)
16 cd03419 GRX_GRXh_1_2_like Glut 99.6 8.1E-16 1.8E-20 118.9 9.7 79 251-336 1-82 (82)
17 COG0695 GrxC Glutaredoxin and 99.6 6.7E-16 1.5E-20 124.0 9.3 77 251-334 2-80 (80)
18 cd02066 GRX_family Glutaredoxi 99.6 3.6E-15 7.7E-20 109.7 9.9 72 251-329 1-72 (72)
19 cd03029 GRX_hybridPRX5 Glutare 99.6 2.9E-15 6.3E-20 115.2 9.2 70 251-328 2-71 (72)
20 COG0278 Glutaredoxin-related p 99.6 5.3E-15 1.2E-19 125.7 9.2 91 248-340 13-104 (105)
21 TIGR02183 GRXA Glutaredoxin, G 99.6 1.2E-14 2.6E-19 116.9 9.8 74 252-331 2-81 (86)
22 TIGR02190 GlrX-dom Glutaredoxi 99.6 1.5E-14 3.2E-19 114.2 9.8 72 248-327 6-77 (79)
23 PRK11200 grxA glutaredoxin 1; 99.6 2.3E-14 4.9E-19 113.9 9.9 74 251-330 2-81 (85)
24 PF04908 SH3BGR: SH3-binding, 99.5 2.1E-14 4.6E-19 121.1 8.0 88 251-338 2-97 (99)
25 PF00462 Glutaredoxin: Glutare 99.5 7.6E-14 1.6E-18 104.1 8.5 60 252-318 1-60 (60)
26 KOG0911 Glutaredoxin-related p 99.4 3.2E-13 6.9E-18 128.3 9.8 90 248-339 137-226 (227)
27 PRK12759 bifunctional gluaredo 99.4 4.7E-13 1E-17 135.6 10.5 84 250-342 2-93 (410)
28 TIGR02194 GlrX_NrdH Glutaredox 99.3 7.4E-12 1.6E-16 96.9 7.9 64 252-323 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.3 2.1E-11 4.5E-16 98.1 9.8 65 251-323 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 99.0 3.5E-09 7.5E-14 78.4 9.8 66 251-323 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.0 5.5E-09 1.2E-13 77.4 9.2 66 251-323 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.7 7.7E-08 1.7E-12 72.9 8.7 67 251-323 1-68 (77)
33 cd02973 TRX_GRX_like Thioredox 98.5 3.6E-07 7.8E-12 68.7 6.9 58 251-319 2-64 (67)
34 cd03041 GST_N_2GST_N GST_N fam 98.3 5.2E-06 1.1E-10 64.9 9.3 70 252-328 2-73 (77)
35 KOG4023 Uncharacterized conser 98.2 1.9E-06 4.1E-11 74.0 5.2 93 251-343 3-102 (108)
36 cd03040 GST_N_mPGES2 GST_N fam 98.2 1.4E-05 3.1E-10 61.5 9.0 68 251-328 1-72 (77)
37 cd00570 GST_N_family Glutathio 98.2 6.4E-06 1.4E-10 59.1 6.3 67 253-326 2-68 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.1 1.7E-05 3.7E-10 60.4 8.0 67 253-328 2-69 (71)
39 cd03055 GST_N_Omega GST_N fami 98.0 2.6E-05 5.5E-10 62.8 8.1 75 245-327 12-87 (89)
40 cd03059 GST_N_SspA GST_N famil 97.8 8.4E-05 1.8E-09 56.1 7.5 68 252-327 1-68 (73)
41 cd03036 ArsC_like Arsenate Red 97.8 2.5E-05 5.4E-10 66.1 4.6 46 252-303 1-46 (111)
42 cd02977 ArsC_family Arsenate R 97.7 3.5E-05 7.5E-10 63.8 3.9 46 252-303 1-46 (105)
43 cd03051 GST_N_GTT2_like GST_N 97.6 0.00015 3.3E-09 54.2 6.2 66 253-325 2-70 (74)
44 cd03060 GST_N_Omega_like GST_N 97.6 0.00021 4.6E-09 54.6 7.1 65 253-325 2-67 (71)
45 PRK01655 spxA transcriptional 97.6 0.00015 3.2E-09 63.4 6.0 45 252-302 2-46 (131)
46 cd03045 GST_N_Delta_Epsilon GS 97.5 0.00047 1E-08 52.3 7.1 68 252-326 1-70 (74)
47 PF13417 GST_N_3: Glutathione 97.5 0.00036 7.9E-09 54.1 6.4 67 254-328 1-67 (75)
48 TIGR00411 redox_disulf_1 small 97.5 0.0009 2E-08 51.3 8.5 55 251-316 2-62 (82)
49 PF05768 DUF836: Glutaredoxin- 97.5 0.0014 3E-08 52.4 9.7 53 251-315 1-57 (81)
50 TIGR01617 arsC_related transcr 97.4 0.00029 6.3E-09 59.8 5.9 45 252-302 1-45 (117)
51 cd03056 GST_N_4 GST_N family, 97.4 0.0008 1.7E-08 50.5 7.2 67 253-326 2-70 (73)
52 cd03032 ArsC_Spx Arsenate Redu 97.4 0.00041 8.8E-09 58.9 6.0 45 252-302 2-46 (115)
53 PRK13344 spxA transcriptional 97.2 0.00058 1.3E-08 60.1 5.0 43 252-300 2-44 (132)
54 PRK12559 transcriptional regul 97.2 0.00062 1.3E-08 59.8 5.2 44 252-301 2-45 (131)
55 cd03026 AhpF_NTD_C TRX-GRX-lik 97.2 0.0011 2.5E-08 54.2 6.4 60 249-319 13-77 (89)
56 cd03054 GST_N_Metaxin GST_N fa 97.1 0.0036 7.8E-08 47.8 8.4 60 260-328 10-69 (72)
57 cd03035 ArsC_Yffb Arsenate Red 97.1 0.0007 1.5E-08 57.2 4.3 45 252-302 1-45 (105)
58 PHA02125 thioredoxin-like prot 97.0 0.0032 7E-08 49.2 7.1 55 252-318 2-56 (75)
59 cd03058 GST_N_Tau GST_N family 96.9 0.0051 1.1E-07 47.1 7.6 69 252-327 1-69 (74)
60 cd03033 ArsC_15kD Arsenate Red 96.9 0.0013 2.7E-08 56.6 4.5 45 252-302 2-46 (113)
61 cd03053 GST_N_Phi GST_N family 96.8 0.0084 1.8E-07 45.7 7.7 70 252-328 2-73 (76)
62 PLN03165 chaperone protein dna 96.6 0.0017 3.7E-08 56.5 3.3 50 345-394 40-93 (111)
63 PF13192 Thioredoxin_3: Thiore 96.6 0.017 3.7E-07 45.4 8.5 51 265-321 9-65 (76)
64 cd03076 GST_N_Pi GST_N family, 96.6 0.015 3.3E-07 44.9 8.0 68 252-327 2-69 (73)
65 cd03052 GST_N_GDAP1 GST_N fami 96.6 0.0083 1.8E-07 46.9 6.6 68 252-326 1-70 (73)
66 TIGR00412 redox_disulf_2 small 96.5 0.011 2.3E-07 46.6 7.0 54 252-318 3-60 (76)
67 KOG3029 Glutathione S-transfer 96.5 0.0073 1.6E-07 60.7 7.3 84 250-343 89-178 (370)
68 cd03042 GST_N_Zeta GST_N famil 96.5 0.01 2.2E-07 44.6 6.4 67 253-326 2-70 (73)
69 cd03061 GST_N_CLIC GST_N famil 96.4 0.026 5.7E-07 47.3 9.1 77 251-329 5-83 (91)
70 cd03039 GST_N_Sigma_like GST_N 96.2 0.025 5.4E-07 43.0 7.3 68 253-327 2-69 (72)
71 cd03048 GST_N_Ure2p_like GST_N 96.2 0.025 5.5E-07 44.0 7.4 68 252-327 2-74 (81)
72 cd03049 GST_N_3 GST_N family, 96.1 0.019 4E-07 43.7 6.2 66 253-326 2-70 (73)
73 PRK10387 glutaredoxin 2; Provi 96.1 0.024 5.1E-07 50.9 7.8 70 252-330 1-71 (210)
74 cd01659 TRX_superfamily Thiore 96.1 0.023 4.9E-07 38.1 5.9 56 252-315 1-61 (69)
75 TIGR02182 GRXB Glutaredoxin, G 96.0 0.022 4.9E-07 52.2 7.3 68 254-330 2-70 (209)
76 cd03034 ArsC_ArsC Arsenate Red 95.9 0.011 2.3E-07 50.3 4.5 43 252-300 1-43 (112)
77 cd02975 PfPDO_like_N Pyrococcu 95.9 0.023 5.1E-07 47.9 6.5 53 250-313 23-81 (113)
78 cd02947 TRX_family TRX family; 95.9 0.055 1.2E-06 40.4 7.9 48 265-317 21-75 (93)
79 TIGR00014 arsC arsenate reduct 95.9 0.011 2.3E-07 50.5 4.5 45 252-302 1-45 (114)
80 COG1393 ArsC Arsenate reductas 95.8 0.012 2.6E-07 51.3 4.3 46 251-302 2-47 (117)
81 cd03080 GST_N_Metaxin_like GST 95.7 0.077 1.7E-06 41.0 8.2 68 252-328 2-70 (75)
82 cd03038 GST_N_etherase_LigE GS 95.6 0.033 7.3E-07 43.8 5.7 66 261-328 11-79 (84)
83 PRK10853 putative reductase; P 95.5 0.018 3.9E-07 49.9 4.3 45 252-302 2-46 (118)
84 PRK10026 arsenate reductase; P 95.3 0.026 5.5E-07 50.9 4.8 44 251-300 3-46 (141)
85 TIGR01616 nitro_assoc nitrogen 95.3 0.028 6.1E-07 49.4 4.8 36 251-292 2-37 (126)
86 cd02953 DsbDgamma DsbD gamma f 95.2 0.068 1.5E-06 43.2 6.6 55 251-312 14-77 (104)
87 cd03050 GST_N_Theta GST_N fami 95.2 0.11 2.3E-06 39.9 7.3 68 253-327 2-71 (76)
88 TIGR03140 AhpF alkyl hydropero 95.0 0.052 1.1E-06 56.6 6.7 61 248-319 117-182 (515)
89 cd03044 GST_N_EF1Bgamma GST_N 94.9 0.11 2.4E-06 40.1 6.6 67 253-326 2-70 (75)
90 TIGR02187 GlrX_arch Glutaredox 94.9 0.081 1.8E-06 49.1 6.9 55 250-315 135-194 (215)
91 TIGR01295 PedC_BrcD bacterioci 94.8 0.12 2.7E-06 44.5 7.3 64 252-321 27-106 (122)
92 PRK09481 sspA stringent starva 94.7 0.12 2.7E-06 47.1 7.6 69 250-326 9-77 (211)
93 COG4545 Glutaredoxin-related p 94.7 0.1 2.2E-06 43.6 6.1 65 253-324 5-81 (85)
94 PRK15317 alkyl hydroperoxide r 94.6 0.073 1.6E-06 55.5 6.6 61 248-319 116-181 (517)
95 cd02949 TRX_NTR TRX domain, no 94.6 0.14 3E-06 41.2 6.7 56 252-318 17-80 (97)
96 cd03043 GST_N_1 GST_N family, 94.4 0.17 3.7E-06 39.2 6.6 65 261-326 5-70 (73)
97 cd03046 GST_N_GTT1_like GST_N 94.2 0.19 4.2E-06 38.0 6.5 61 267-328 9-71 (76)
98 cd03057 GST_N_Beta GST_N famil 94.1 0.2 4.4E-06 38.4 6.5 67 253-327 2-71 (77)
99 TIGR00862 O-ClC intracellular 94.0 0.28 6.2E-06 47.2 8.6 77 252-330 3-81 (236)
100 PF03960 ArsC: ArsC family; I 94.0 0.12 2.7E-06 43.3 5.4 37 265-301 5-41 (110)
101 PF13409 GST_N_2: Glutathione 93.9 0.073 1.6E-06 41.0 3.6 63 266-329 2-68 (70)
102 COG0484 DnaJ DnaJ-class molecu 93.8 0.039 8.4E-07 56.9 2.4 49 346-394 142-204 (371)
103 cd03047 GST_N_2 GST_N family, 93.6 0.35 7.6E-06 36.9 7.0 66 253-325 2-69 (73)
104 PRK10767 chaperone protein Dna 93.4 0.064 1.4E-06 54.3 3.2 35 149-186 33-67 (371)
105 PRK14300 chaperone protein Dna 93.2 0.066 1.4E-06 54.4 3.1 48 347-394 146-205 (372)
106 TIGR03143 AhpF_homolog putativ 93.2 0.21 4.5E-06 52.9 6.7 58 248-316 476-538 (555)
107 KOG2813 Predicted molecular ch 92.8 0.085 1.9E-06 53.9 3.1 20 375-394 244-263 (406)
108 cd02989 Phd_like_TxnDC9 Phosdu 92.7 0.48 1E-05 40.0 7.1 61 250-320 23-90 (113)
109 PTZ00051 thioredoxin; Provisio 92.6 0.67 1.5E-05 36.6 7.4 57 252-319 22-85 (98)
110 PF00684 DnaJ_CXXCXGXG: DnaJ c 92.4 0.1 2.2E-06 40.8 2.5 45 349-393 1-62 (66)
111 PRK14285 chaperone protein Dna 92.3 0.12 2.7E-06 52.4 3.6 34 150-186 33-66 (365)
112 PRK14284 chaperone protein Dna 92.2 0.11 2.5E-06 53.0 3.2 35 149-186 30-64 (391)
113 PHA02278 thioredoxin-like prot 92.2 0.63 1.4E-05 39.2 7.1 64 249-318 14-85 (103)
114 TIGR01068 thioredoxin thioredo 92.1 0.83 1.8E-05 35.4 7.3 58 251-318 16-81 (101)
115 cd02957 Phd_like Phosducin (Ph 92.0 0.73 1.6E-05 38.3 7.3 63 251-325 26-96 (113)
116 cd02954 DIM1 Dim1 family; Dim1 91.6 0.92 2E-05 39.6 7.6 59 250-319 15-82 (114)
117 PRK15113 glutathione S-transfe 91.5 0.99 2.2E-05 41.3 8.2 73 250-327 4-78 (214)
118 TIGR01262 maiA maleylacetoacet 91.5 0.39 8.5E-06 43.0 5.5 63 265-328 7-72 (210)
119 PRK14288 chaperone protein Dna 91.3 0.17 3.6E-06 51.5 3.3 35 149-186 32-66 (369)
120 PRK14287 chaperone protein Dna 91.3 0.15 3.2E-06 51.9 2.8 34 149-186 33-66 (371)
121 PF00085 Thioredoxin: Thioredo 91.2 0.9 2E-05 35.5 6.6 60 250-319 18-85 (103)
122 cd02984 TRX_PICOT TRX domain, 91.2 1.3 2.9E-05 34.8 7.6 56 252-318 18-81 (97)
123 PRK14295 chaperone protein Dna 91.1 0.15 3.3E-06 52.2 2.8 35 149-186 38-72 (389)
124 PRK14282 chaperone protein Dna 91.1 0.16 3.4E-06 51.6 2.8 36 149-186 33-68 (369)
125 PRK14301 chaperone protein Dna 91.1 0.16 3.4E-06 51.8 2.8 34 150-186 34-67 (373)
126 PRK14298 chaperone protein Dna 91.1 0.16 3.5E-06 51.8 2.8 34 149-186 34-67 (377)
127 PRK14286 chaperone protein Dna 91.0 0.16 3.4E-06 51.8 2.7 34 150-186 34-67 (372)
128 PRK14294 chaperone protein Dna 91.0 0.17 3.8E-06 51.2 3.0 35 149-186 33-67 (366)
129 KOG0406 Glutathione S-transfer 91.0 1.1 2.4E-05 43.8 8.3 74 250-330 8-81 (231)
130 PF13098 Thioredoxin_2: Thiore 90.7 1.2 2.6E-05 36.0 7.2 67 250-323 7-104 (112)
131 PRK14289 chaperone protein Dna 90.7 0.18 3.9E-06 51.4 2.8 35 149-186 34-68 (386)
132 PRK14291 chaperone protein Dna 90.6 0.21 4.6E-06 50.9 3.3 34 149-186 32-65 (382)
133 PRK10877 protein disulfide iso 90.5 1.6 3.5E-05 41.7 8.9 35 246-286 105-142 (232)
134 TIGR02349 DnaJ_bact chaperone 90.4 0.19 4.2E-06 50.4 2.7 34 149-186 29-62 (354)
135 PRK09381 trxA thioredoxin; Pro 90.4 1.8 3.8E-05 35.2 7.8 58 251-319 24-89 (109)
136 PRK14290 chaperone protein Dna 90.3 0.23 4.9E-06 50.4 3.1 36 149-186 32-67 (365)
137 PRK14279 chaperone protein Dna 90.1 0.21 4.5E-06 51.3 2.7 36 149-187 38-73 (392)
138 PLN02378 glutathione S-transfe 90.0 0.94 2E-05 41.7 6.6 62 264-327 18-79 (213)
139 PRK14280 chaperone protein Dna 89.9 0.23 5E-06 50.6 2.8 34 149-186 33-66 (376)
140 cd03077 GST_N_Alpha GST_N fami 89.8 2.6 5.6E-05 33.1 8.1 67 252-326 2-70 (79)
141 PLN02473 glutathione S-transfe 89.8 1.3 2.7E-05 40.1 7.2 69 252-327 3-73 (214)
142 PRK14292 chaperone protein Dna 89.5 0.26 5.6E-06 50.0 2.7 33 150-186 32-64 (371)
143 PRK14293 chaperone protein Dna 89.4 0.24 5.2E-06 50.4 2.5 34 149-186 32-65 (374)
144 KOG0712 Molecular chaperone (D 89.4 0.24 5.3E-06 50.6 2.5 48 347-394 128-193 (337)
145 PRK14296 chaperone protein Dna 89.2 0.28 6E-06 50.1 2.8 34 150-187 34-67 (372)
146 TIGR02187 GlrX_arch Glutaredox 89.1 1.2 2.6E-05 41.4 6.7 62 248-318 19-90 (215)
147 PRK14278 chaperone protein Dna 89.1 0.31 6.7E-06 49.8 3.0 33 150-186 33-65 (378)
148 PLN02817 glutathione dehydroge 89.1 1.1 2.5E-05 43.5 6.8 62 265-328 72-133 (265)
149 cd02961 PDI_a_family Protein D 89.0 1.6 3.6E-05 33.2 6.3 55 250-315 17-80 (101)
150 PRK14297 chaperone protein Dna 88.9 0.27 5.9E-06 50.1 2.5 35 149-186 33-67 (380)
151 cd02985 TRX_CDSP32 TRX family, 88.9 3.4 7.3E-05 33.9 8.5 52 265-318 26-84 (103)
152 PRK14276 chaperone protein Dna 88.9 0.29 6.4E-06 49.9 2.7 34 149-186 33-66 (380)
153 cd02956 ybbN ybbN protein fami 88.5 1.9 4.2E-05 34.0 6.6 56 252-318 16-79 (96)
154 PRK14296 chaperone protein Dna 88.3 0.49 1.1E-05 48.3 3.8 48 347-394 150-213 (372)
155 cd02965 HyaE HyaE family; HyaE 88.2 2.5 5.3E-05 36.9 7.5 64 249-321 28-99 (111)
156 PRK10996 thioredoxin 2; Provis 88.0 2.7 5.9E-05 36.6 7.8 57 251-318 55-119 (139)
157 PRK14285 chaperone protein Dna 88.0 0.53 1.2E-05 47.9 3.8 48 347-394 147-206 (365)
158 cd03020 DsbA_DsbC_DsbG DsbA fa 87.9 3.8 8.2E-05 37.3 9.0 36 248-289 77-114 (197)
159 PRK14277 chaperone protein Dna 87.8 0.35 7.7E-06 49.4 2.5 34 150-186 35-68 (386)
160 cd02951 SoxW SoxW family; SoxW 87.7 1.3 2.8E-05 37.0 5.4 58 251-315 17-93 (125)
161 PRK14280 chaperone protein Dna 87.4 0.62 1.3E-05 47.5 4.0 48 347-394 144-207 (376)
162 PRK14283 chaperone protein Dna 87.2 0.43 9.3E-06 48.6 2.7 34 149-186 34-67 (378)
163 PRK14282 chaperone protein Dna 87.1 0.7 1.5E-05 47.0 4.1 48 347-394 153-216 (369)
164 TIGR01126 pdi_dom protein disu 87.1 1.5 3.3E-05 34.2 5.2 54 248-312 13-74 (102)
165 PTZ00037 DnaJ_C chaperone prot 87.0 0.44 9.5E-06 49.7 2.7 31 149-186 57-87 (421)
166 cd03003 PDI_a_ERdj5_N PDIa fam 86.9 2.2 4.9E-05 34.2 6.2 55 251-316 21-83 (101)
167 cd02996 PDI_a_ERp44 PDIa famil 86.8 2.2 4.7E-05 34.8 6.2 55 251-316 21-89 (108)
168 cd02994 PDI_a_TMX PDIa family, 86.7 2.4 5.3E-05 33.8 6.3 52 251-313 19-77 (101)
169 PRK14284 chaperone protein Dna 86.7 0.63 1.4E-05 47.7 3.5 49 346-394 158-218 (391)
170 PRK14279 chaperone protein Dna 86.7 0.68 1.5E-05 47.6 3.8 47 347-393 174-232 (392)
171 PRK14301 chaperone protein Dna 86.6 0.51 1.1E-05 48.1 2.8 47 347-393 145-203 (373)
172 PRK14276 chaperone protein Dna 86.5 0.69 1.5E-05 47.3 3.7 48 346-393 146-209 (380)
173 PRK14281 chaperone protein Dna 86.4 0.47 1E-05 48.7 2.5 34 150-186 33-66 (397)
174 cd02998 PDI_a_ERp38 PDIa famil 86.4 2.3 4.9E-05 33.4 5.9 52 251-313 21-81 (105)
175 cd02959 ERp19 Endoplasmic reti 86.3 1.3 2.9E-05 37.7 4.8 35 252-292 23-63 (117)
176 PRK14278 chaperone protein Dna 86.2 0.76 1.6E-05 47.0 3.8 48 347-394 140-203 (378)
177 PRK10767 chaperone protein Dna 86.0 0.62 1.3E-05 47.3 3.0 49 346-394 142-202 (371)
178 PRK14286 chaperone protein Dna 85.8 0.84 1.8E-05 46.6 3.9 47 347-393 151-209 (372)
179 cd03004 PDI_a_ERdj5_C PDIa fam 85.8 2.8 6.2E-05 33.6 6.3 55 250-315 21-83 (104)
180 PRK14297 chaperone protein Dna 85.8 0.61 1.3E-05 47.6 2.9 48 347-394 149-212 (380)
181 PRK14277 chaperone protein Dna 85.7 0.62 1.4E-05 47.7 3.0 47 347-393 156-218 (386)
182 COG0178 UvrA Excinuclease ATPa 85.7 0.75 1.6E-05 52.1 3.7 52 316-368 696-764 (935)
183 PRK14288 chaperone protein Dna 85.6 0.7 1.5E-05 47.1 3.2 46 348-393 142-198 (369)
184 cd02987 Phd_like_Phd Phosducin 85.6 3.4 7.4E-05 37.9 7.4 61 250-321 84-151 (175)
185 PRK14298 chaperone protein Dna 85.4 0.89 1.9E-05 46.5 3.9 47 347-393 142-204 (377)
186 PRK14300 chaperone protein Dna 85.4 0.63 1.4E-05 47.4 2.8 35 149-187 32-66 (372)
187 cd02948 TRX_NDPK TRX domain, T 85.4 4.4 9.6E-05 33.0 7.3 55 251-317 20-83 (102)
188 KOG0910 Thioredoxin-like prote 85.2 0.93 2E-05 41.7 3.5 74 234-318 47-128 (150)
189 cd03078 GST_N_Metaxin1_like GS 85.1 7.7 0.00017 30.6 8.3 60 260-328 10-69 (73)
190 PRK14289 chaperone protein Dna 85.0 0.94 2E-05 46.3 3.8 48 347-394 155-218 (386)
191 PRK14294 chaperone protein Dna 84.9 0.71 1.5E-05 46.9 2.9 47 347-393 145-203 (366)
192 PRK14295 chaperone protein Dna 84.8 1 2.2E-05 46.3 3.9 47 347-393 167-225 (389)
193 KOG1422 Intracellular Cl- chan 84.8 3.2 6.9E-05 40.5 7.0 63 264-330 19-83 (221)
194 cd03001 PDI_a_P5 PDIa family, 84.4 5 0.00011 31.6 7.0 50 252-312 22-77 (103)
195 PRK14281 chaperone protein Dna 84.2 0.88 1.9E-05 46.8 3.3 47 347-393 164-225 (397)
196 PF13901 DUF4206: Domain of un 84.2 0.12 2.6E-06 48.6 -2.8 84 307-393 102-195 (202)
197 PRK14290 chaperone protein Dna 83.6 0.93 2E-05 46.0 3.1 47 347-393 150-211 (365)
198 cd02972 DsbA_family DsbA famil 83.6 3.3 7.1E-05 31.3 5.4 33 252-290 1-39 (98)
199 cd02999 PDI_a_ERp44_like PDIa 83.6 3.7 8E-05 33.8 6.1 54 248-312 18-77 (100)
200 TIGR00595 priA primosomal prot 83.6 0.89 1.9E-05 48.2 3.0 46 346-394 213-260 (505)
201 TIGR02349 DnaJ_bact chaperone 83.4 1.4 3E-05 44.4 4.2 47 347-393 144-206 (354)
202 PTZ00037 DnaJ_C chaperone prot 83.3 1 2.2E-05 47.1 3.2 47 347-393 151-214 (421)
203 PF00684 DnaJ_CXXCXGXG: DnaJ c 82.8 1.6 3.4E-05 34.1 3.4 37 346-386 15-66 (66)
204 cd03002 PDI_a_MPD1_like PDI fa 82.8 4.3 9.3E-05 32.5 6.1 54 251-313 21-80 (109)
205 cd03065 PDI_b_Calsequestrin_N 82.1 7.2 0.00016 34.1 7.6 62 248-319 26-101 (120)
206 PRK14873 primosome assembly pr 81.9 1.6 3.4E-05 48.2 4.2 46 346-394 383-429 (665)
207 cd03005 PDI_a_ERp46 PDIa famil 81.5 4.1 8.9E-05 32.1 5.4 55 251-316 19-84 (102)
208 cd02962 TMX2 TMX2 family; comp 81.4 6.6 0.00014 35.6 7.3 62 252-319 51-122 (152)
209 TIGR02642 phage_xxxx uncharact 81.3 1.1 2.3E-05 42.5 2.4 26 346-371 99-129 (186)
210 PRK13972 GSH-dependent disulfi 81.2 6.9 0.00015 35.6 7.5 54 252-313 2-57 (215)
211 PRK14287 chaperone protein Dna 80.8 1.1 2.4E-05 45.7 2.4 49 346-394 138-202 (371)
212 cd03079 GST_N_Metaxin2 GST_N f 80.7 4 8.7E-05 33.0 5.2 54 267-328 18-71 (74)
213 PRK10357 putative glutathione 80.7 4.1 8.9E-05 36.5 5.8 65 253-325 2-67 (202)
214 cd02963 TRX_DnaJ TRX domain, D 80.4 7.2 0.00016 32.4 6.8 57 251-318 27-92 (111)
215 cd02952 TRP14_like Human TRX-r 80.2 3.5 7.6E-05 36.0 5.0 48 265-313 39-96 (119)
216 cd02988 Phd_like_VIAF Phosduci 80.0 20 0.00043 33.6 10.2 55 251-319 104-166 (192)
217 cd02997 PDI_a_PDIR PDIa family 80.0 6.4 0.00014 31.0 6.1 56 250-316 19-86 (104)
218 PRK14292 chaperone protein Dna 79.8 1.6 3.5E-05 44.3 3.2 47 347-393 140-203 (371)
219 PRK14283 chaperone protein Dna 79.5 2.1 4.6E-05 43.7 3.9 48 347-394 147-210 (378)
220 PLN02395 glutathione S-transfe 78.5 7.8 0.00017 34.9 6.9 70 252-329 3-74 (215)
221 PRK14293 chaperone protein Dna 78.4 2.5 5.4E-05 43.1 4.0 47 347-393 144-206 (374)
222 PRK14291 chaperone protein Dna 78.0 2.5 5.4E-05 43.3 3.9 49 346-394 156-215 (382)
223 cd02986 DLP Dim1 family, Dim1- 77.9 8.8 0.00019 33.8 6.8 60 249-318 14-81 (114)
224 PRK11752 putative S-transferas 77.8 9.7 0.00021 36.6 7.7 73 247-327 40-124 (264)
225 PF13719 zinc_ribbon_5: zinc-r 77.0 1.9 4E-05 30.5 1.9 28 357-384 2-33 (37)
226 PF15616 TerY-C: TerY-C metal 76.9 2.3 4.9E-05 38.4 2.9 37 347-387 78-116 (131)
227 COG0484 DnaJ DnaJ-class molecu 76.6 3.1 6.6E-05 43.3 4.1 36 149-187 33-68 (371)
228 COG0625 Gst Glutathione S-tran 75.9 7 0.00015 35.4 5.8 68 253-327 2-71 (211)
229 PF13728 TraF: F plasmid trans 75.6 8.6 0.00019 36.6 6.6 59 248-313 120-189 (215)
230 PRK05580 primosome assembly pr 75.4 2.2 4.8E-05 46.8 2.9 46 346-394 381-428 (679)
231 cd03000 PDI_a_TMX3 PDIa family 75.4 9.1 0.0002 31.0 5.9 54 251-315 18-81 (104)
232 TIGR00630 uvra excinuclease AB 75.3 2.1 4.6E-05 48.9 2.9 62 308-369 682-771 (924)
233 PTZ00057 glutathione s-transfe 75.1 15 0.00033 33.3 7.9 71 250-326 3-77 (205)
234 COG1107 Archaea-specific RecJ- 75.1 1.6 3.6E-05 47.9 1.8 42 346-387 53-106 (715)
235 cd02950 TxlA TRX-like protein 75.0 7.7 0.00017 34.1 5.7 59 251-318 23-90 (142)
236 PF06953 ArsD: Arsenical resis 74.8 14 0.0003 32.9 7.3 56 271-328 31-95 (123)
237 COG3118 Thioredoxin domain-con 74.7 8.1 0.00017 39.4 6.4 63 249-321 43-113 (304)
238 cd02982 PDI_b'_family Protein 74.5 9.4 0.0002 30.2 5.6 51 252-313 16-74 (103)
239 PF10865 DUF2703: Domain of un 74.1 28 0.00061 30.9 8.9 49 263-317 12-71 (120)
240 cd02993 PDI_a_APS_reductase PD 73.5 17 0.00036 29.9 7.1 54 249-312 22-83 (109)
241 cd02955 SSP411 TRX domain, SSP 70.9 15 0.00032 32.2 6.4 65 250-320 16-96 (124)
242 PF04216 FdhE: Protein involve 70.3 2.5 5.4E-05 41.5 1.7 36 346-386 172-221 (290)
243 TIGR02642 phage_xxxx uncharact 70.2 3 6.4E-05 39.6 2.1 30 357-389 99-128 (186)
244 cd02995 PDI_a_PDI_a'_C PDIa fa 70.0 14 0.00031 28.9 5.7 52 249-312 19-78 (104)
245 COG1198 PriA Primosomal protei 69.7 4.2 9E-05 45.7 3.4 46 346-394 435-482 (730)
246 cd03075 GST_N_Mu GST_N family, 69.6 30 0.00065 27.4 7.5 60 267-326 10-76 (82)
247 PRK14714 DNA polymerase II lar 69.3 3.4 7.4E-05 48.8 2.7 41 347-393 668-715 (1337)
248 PF14595 Thioredoxin_9: Thiore 68.8 2.6 5.7E-05 37.0 1.3 58 248-313 41-104 (129)
249 PRK00635 excinuclease ABC subu 68.4 4.1 8.9E-05 49.8 3.2 52 317-369 1574-1642(1809)
250 KOG0907 Thioredoxin [Posttrans 68.2 16 0.00035 31.2 6.0 58 249-316 21-85 (106)
251 PRK10542 glutathionine S-trans 68.0 13 0.00029 33.0 5.7 59 268-327 10-72 (201)
252 PF02798 GST_N: Glutathione S- 67.3 24 0.00051 27.5 6.3 57 268-325 11-71 (76)
253 PLN03165 chaperone protein dna 66.9 4.2 9.2E-05 35.7 2.2 19 348-366 77-95 (111)
254 PF11009 DUF2847: Protein of u 65.3 27 0.00059 30.4 6.8 67 248-319 18-92 (105)
255 COG3019 Predicted metal-bindin 64.8 30 0.00066 32.1 7.3 75 248-332 24-104 (149)
256 PRK13728 conjugal transfer pro 64.1 22 0.00047 33.5 6.5 56 252-313 73-142 (181)
257 cd03009 TryX_like_TryX_NRX Try 63.4 37 0.00081 28.3 7.2 36 251-291 20-64 (131)
258 PTZ00443 Thioredoxin domain-co 62.6 20 0.00043 34.6 6.1 57 251-318 55-119 (224)
259 cd03006 PDI_a_EFP1_N PDIa fami 62.4 21 0.00046 30.6 5.6 57 250-316 31-95 (113)
260 cd02992 PDI_a_QSOX PDIa family 62.2 18 0.0004 30.4 5.2 54 251-313 22-84 (114)
261 PTZ00062 glutaredoxin; Provisi 61.9 28 0.00061 33.2 6.9 54 249-320 17-77 (204)
262 PF13717 zinc_ribbon_4: zinc-r 61.6 5.7 0.00012 28.0 1.7 27 358-384 3-33 (36)
263 TIGR02740 TraF-like TraF-like 61.2 18 0.0004 35.5 5.7 59 248-313 166-235 (271)
264 COG5494 Predicted thioredoxin/ 60.0 31 0.00066 34.2 6.8 58 250-318 11-70 (265)
265 PRK03564 formate dehydrogenase 59.9 8.4 0.00018 39.2 3.2 26 355-385 210-235 (309)
266 PRK00349 uvrA excinuclease ABC 59.6 9 0.00019 44.2 3.7 63 308-370 684-774 (943)
267 PF13899 Thioredoxin_7: Thiore 57.9 36 0.00078 26.6 5.9 53 250-313 18-79 (82)
268 PF08271 TF_Zn_Ribbon: TFIIB z 56.8 8.4 0.00018 27.7 1.9 24 359-382 2-25 (43)
269 PLN00410 U5 snRNP protein, DIM 56.7 24 0.00052 32.0 5.2 55 252-316 27-89 (142)
270 PRK00293 dipZ thiol:disulfide 56.3 36 0.00077 36.9 7.4 58 251-314 476-542 (571)
271 PRK04023 DNA polymerase II lar 56.2 14 0.00029 43.3 4.3 72 310-394 596-670 (1121)
272 TIGR01562 FdhE formate dehydro 56.0 9.8 0.00021 38.6 2.9 11 356-366 209-219 (305)
273 cd02964 TryX_like_family Trypa 55.4 62 0.0014 27.3 7.3 36 251-291 19-63 (132)
274 PF07315 DUF1462: Protein of u 54.8 63 0.0014 27.9 7.1 41 280-320 37-80 (93)
275 KOG4244 Failed axon connection 53.6 21 0.00045 36.1 4.7 51 266-325 61-111 (281)
276 PF13462 Thioredoxin_4: Thiore 53.5 25 0.00054 29.9 4.6 23 305-327 134-156 (162)
277 cd03023 DsbA_Com1_like DsbA fa 53.2 15 0.00032 30.6 3.1 57 271-328 87-150 (154)
278 cd03010 TlpA_like_DsbE TlpA-li 53.0 82 0.0018 26.0 7.5 28 265-292 36-67 (127)
279 PF09026 CENP-B_dimeris: Centr 52.2 4.7 0.0001 35.0 0.0 9 152-160 60-68 (101)
280 KOG4420 Uncharacterized conser 52.1 9.7 0.00021 38.6 2.1 87 234-330 12-100 (325)
281 PRK11657 dsbG disulfide isomer 51.5 22 0.00047 34.5 4.4 36 247-288 116-155 (251)
282 PF11331 DUF3133: Protein of u 51.0 6.7 0.00015 29.7 0.7 33 353-385 2-40 (46)
283 cd03031 GRX_GRX_like Glutaredo 51.0 10 0.00022 34.5 1.9 8 348-355 112-119 (147)
284 PF09297 zf-NADH-PPase: NADH p 50.8 8.2 0.00018 26.2 1.0 25 359-384 5-29 (32)
285 cd03022 DsbA_HCCA_Iso DsbA fam 49.1 23 0.0005 31.2 3.8 58 270-328 124-188 (192)
286 smart00834 CxxC_CXXC_SSSS Puta 47.9 11 0.00025 25.9 1.4 26 359-384 7-34 (41)
287 PF14354 Lar_restr_allev: Rest 47.4 11 0.00023 28.5 1.3 27 357-384 3-37 (61)
288 PF14205 Cys_rich_KTR: Cystein 47.2 17 0.00036 28.7 2.3 34 355-388 2-40 (55)
289 PRK03988 translation initiatio 47.0 16 0.00034 33.2 2.5 33 356-388 101-135 (138)
290 TIGR02098 MJ0042_CXXC MJ0042 f 46.9 12 0.00026 25.9 1.3 27 358-384 3-33 (38)
291 KOG1829 Uncharacterized conser 46.7 6.1 0.00013 43.3 -0.2 127 253-384 384-539 (580)
292 PRK02935 hypothetical protein; 46.6 11 0.00023 33.4 1.3 25 358-385 71-95 (110)
293 PTZ00102 disulphide isomerase; 46.6 54 0.0012 33.3 6.5 56 250-316 51-117 (477)
294 COG2999 GrxB Glutaredoxin 2 [P 46.0 33 0.00071 33.3 4.5 71 265-339 8-80 (215)
295 KOG2813 Predicted molecular ch 45.8 15 0.00032 38.3 2.3 46 346-394 198-252 (406)
296 KOG4218 Nuclear hormone recept 45.7 8.6 0.00019 40.3 0.7 34 346-379 15-54 (475)
297 smart00653 eIF2B_5 domain pres 45.4 14 0.00029 32.3 1.8 28 356-383 79-108 (110)
298 PF13462 Thioredoxin_4: Thiore 44.9 33 0.00072 29.1 4.1 42 246-293 10-59 (162)
299 PF14353 CpXC: CpXC protein 44.8 11 0.00024 32.5 1.1 29 265-299 3-32 (128)
300 PF10568 Tom37: Outer mitochon 44.7 87 0.0019 25.1 6.2 54 265-327 13-70 (72)
301 COG1107 Archaea-specific RecJ- 44.6 12 0.00025 41.7 1.5 22 243-271 4-26 (715)
302 TIGR01130 ER_PDI_fam protein d 44.6 60 0.0013 32.4 6.4 56 251-317 21-87 (462)
303 PF03833 PolC_DP2: DNA polymer 44.5 7.4 0.00016 44.5 0.0 73 310-393 624-698 (900)
304 PF01873 eIF-5_eIF-2B: Domain 44.5 9.5 0.0002 33.9 0.7 52 309-384 69-122 (125)
305 TIGR00311 aIF-2beta translatio 44.4 19 0.0004 32.5 2.5 32 356-387 96-129 (133)
306 KOG1695 Glutathione S-transfer 44.2 67 0.0014 30.9 6.4 60 266-327 12-71 (206)
307 cd03023 DsbA_Com1_like DsbA fa 43.4 30 0.00065 28.8 3.5 38 246-289 3-45 (154)
308 PF11023 DUF2614: Protein of u 43.2 11 0.00024 33.5 0.9 27 357-386 69-95 (114)
309 COG3340 PepE Peptidase E [Amin 42.7 1E+02 0.0023 30.4 7.4 81 250-342 32-117 (224)
310 PHA00626 hypothetical protein 42.5 18 0.0004 28.8 1.9 18 348-365 2-19 (59)
311 PRK15412 thiol:disulfide inter 42.4 1.3E+02 0.0027 27.3 7.6 28 265-292 79-109 (185)
312 smart00778 Prim_Zn_Ribbon Zinc 42.1 17 0.00038 26.2 1.6 29 356-384 2-33 (37)
313 KOG2767 Translation initiation 41.8 14 0.0003 38.7 1.4 51 326-389 78-131 (400)
314 TIGR00385 dsbE periplasmic pro 41.0 1.4E+02 0.003 26.7 7.6 27 265-291 74-103 (173)
315 PF06764 DUF1223: Protein of u 41.0 63 0.0014 30.9 5.7 65 252-322 2-86 (202)
316 PF12760 Zn_Tnp_IS1595: Transp 40.8 22 0.00048 25.9 2.0 25 359-383 20-44 (46)
317 KOG2824 Glutaredoxin-related p 39.7 21 0.00045 36.2 2.3 20 68-87 39-58 (281)
318 KOG0868 Glutathione S-transfer 39.4 58 0.0013 31.7 5.1 71 250-327 4-77 (217)
319 COG3634 AhpF Alkyl hydroperoxi 39.4 23 0.0005 37.7 2.6 61 252-320 120-182 (520)
320 cd03019 DsbA_DsbA DsbA family, 38.8 44 0.00095 28.9 4.0 37 247-289 14-56 (178)
321 cd02970 PRX_like2 Peroxiredoxi 38.6 1.7E+02 0.0038 24.3 7.4 44 265-311 35-85 (149)
322 PRK00635 excinuclease ABC subu 38.6 27 0.00059 43.2 3.4 52 317-369 687-752 (1809)
323 PRK03147 thiol-disulfide oxido 38.6 1.4E+02 0.0029 25.9 7.0 28 265-292 72-106 (173)
324 KOG2807 RNA polymerase II tran 38.2 1E+02 0.0023 32.2 7.0 52 248-303 163-216 (378)
325 PRK12336 translation initiatio 37.5 26 0.00057 33.2 2.5 31 356-386 97-129 (201)
326 PF08792 A2L_zn_ribbon: A2L zi 37.5 16 0.00036 25.6 0.9 24 359-383 5-28 (33)
327 cd02958 UAS UAS family; UAS is 37.1 62 0.0014 26.7 4.4 57 250-314 18-84 (114)
328 PRK00564 hypA hydrogenase nick 37.0 24 0.00052 30.7 2.0 24 346-369 71-100 (117)
329 TIGR00595 priA primosomal prot 36.7 22 0.00049 37.9 2.1 38 344-387 220-264 (505)
330 smart00594 UAS UAS domain. 36.0 1.7E+02 0.0038 24.7 7.1 55 251-314 29-94 (122)
331 TIGR02739 TraF type-F conjugat 35.4 1E+02 0.0023 30.5 6.4 59 248-313 150-219 (256)
332 TIGR00424 APS_reduc 5'-adenyly 34.9 99 0.0021 33.2 6.5 56 251-315 374-438 (463)
333 PLN02189 cellulose synthase 34.7 21 0.00046 41.7 1.6 39 346-384 34-84 (1040)
334 PLN02309 5'-adenylylsulfate re 34.2 65 0.0014 34.4 5.1 58 248-315 365-432 (457)
335 TIGR00108 eRF peptide chain re 34.0 25 0.00054 36.8 1.9 55 314-368 290-357 (409)
336 PTZ00102 disulphide isomerase; 33.0 72 0.0016 32.4 5.0 54 248-312 375-436 (477)
337 PRK07220 DNA topoisomerase I; 32.8 44 0.00096 37.5 3.7 48 346-394 589-664 (740)
338 PRK13703 conjugal pilus assemb 32.4 29 0.00063 34.2 2.0 59 248-313 143-212 (248)
339 PF07092 DUF1356: Protein of u 31.8 25 0.00055 34.7 1.5 28 346-373 27-54 (238)
340 PF08534 Redoxin: Redoxin; In 31.8 2.4E+02 0.0052 23.8 7.3 45 251-300 31-82 (146)
341 COG5082 AIR1 Arginine methyltr 31.7 29 0.00062 33.4 1.7 43 346-389 60-110 (190)
342 PF08273 Prim_Zn_Ribbon: Zinc- 31.4 38 0.00083 24.8 2.0 28 356-383 2-33 (40)
343 COG4837 Uncharacterized protei 31.2 1.3E+02 0.0028 26.4 5.5 67 249-320 4-87 (106)
344 PRK04023 DNA polymerase II lar 31.1 31 0.00067 40.5 2.2 28 359-393 628-657 (1121)
345 cd03011 TlpA_like_ScsD_MtbDsbE 30.7 41 0.00089 27.4 2.3 14 265-278 31-44 (123)
346 PRK14714 DNA polymerase II lar 30.5 45 0.00097 40.1 3.3 73 311-385 631-718 (1337)
347 PRK00398 rpoP DNA-directed RNA 30.5 39 0.00084 24.5 1.9 9 376-384 21-29 (46)
348 PF09026 CENP-B_dimeris: Centr 30.3 17 0.00037 31.7 0.0 6 109-114 39-44 (101)
349 PF01927 Mut7-C: Mut7-C RNAse 30.2 24 0.00053 31.4 1.0 29 356-384 90-132 (147)
350 TIGR02738 TrbB type-F conjugat 29.3 2.2E+02 0.0049 25.7 7.0 35 250-290 52-90 (153)
351 KOG0867 Glutathione S-transfer 29.0 1.6E+02 0.0035 27.9 6.3 69 251-326 2-72 (226)
352 PF09413 DUF2007: Domain of un 28.8 61 0.0013 24.6 2.8 52 252-315 1-52 (67)
353 PF01323 DSBA: DSBA-like thior 28.2 33 0.00071 30.1 1.4 58 270-328 124-189 (193)
354 PF06110 DUF953: Eukaryotic pr 27.7 1.1E+02 0.0023 27.1 4.5 64 248-312 18-94 (119)
355 cd02967 mauD Methylamine utili 27.4 2.9E+02 0.0062 22.1 6.7 22 251-278 24-45 (114)
356 PF07295 DUF1451: Protein of u 27.3 37 0.00081 31.0 1.7 8 348-355 114-121 (146)
357 PLN02436 cellulose synthase A 26.7 36 0.00077 40.2 1.7 39 346-384 36-86 (1094)
358 TIGR03676 aRF1/eRF1 peptide ch 26.3 47 0.001 34.8 2.4 55 314-368 286-353 (403)
359 KOG4623 Uncharacterized conser 25.9 31 0.00067 37.8 1.0 29 356-384 27-55 (611)
360 cd03019 DsbA_DsbA DsbA family, 25.7 54 0.0012 28.4 2.3 19 305-323 141-159 (178)
361 cd02966 TlpA_like_family TlpA- 25.5 3E+02 0.0065 20.8 7.2 35 251-291 22-63 (116)
362 PF13408 Zn_ribbon_recom: Reco 25.4 80 0.0017 22.9 2.9 35 356-391 4-40 (58)
363 KOG2041 WD40 repeat protein [G 25.4 63 0.0014 37.2 3.2 49 346-394 1117-1181(1189)
364 PRK12775 putative trifunctiona 25.3 80 0.0017 36.7 4.2 29 305-333 717-745 (1006)
365 PRK03681 hypA hydrogenase nick 25.1 55 0.0012 28.4 2.2 22 346-367 70-97 (114)
366 KOG2324 Prolyl-tRNA synthetase 24.8 51 0.0011 35.1 2.3 32 358-389 228-260 (457)
367 PLN02638 cellulose synthase A 24.7 36 0.00078 40.1 1.3 38 346-383 17-66 (1079)
368 COG1096 Predicted RNA-binding 24.5 47 0.001 31.9 1.8 28 354-384 146-173 (188)
369 PRK04011 peptide chain release 24.1 54 0.0012 34.3 2.4 56 314-369 294-362 (411)
370 COG3058 FdhE Uncharacterized p 24.1 18 0.00039 36.9 -1.1 10 346-355 185-194 (308)
371 KOG4684 Uncharacterized conser 24.0 28 0.0006 34.5 0.2 17 377-393 171-195 (275)
372 TIGR01130 ER_PDI_fam protein d 24.0 1.4E+02 0.0031 29.8 5.2 53 248-313 364-425 (462)
373 COG4332 Uncharacterized protei 23.4 50 0.0011 31.9 1.8 37 345-385 16-58 (203)
374 TIGR02605 CxxC_CxxC_SSSS putat 23.0 46 0.001 24.3 1.2 27 359-385 7-35 (52)
375 COG2260 Predicted Zn-ribbon RN 22.7 40 0.00087 26.9 0.8 18 376-393 5-23 (59)
376 PF09788 Tmemb_55A: Transmembr 22.5 41 0.00089 33.7 1.1 17 377-393 158-183 (256)
377 PF13905 Thioredoxin_8: Thiore 22.3 1.5E+02 0.0033 23.0 4.1 36 265-300 12-56 (95)
378 PRK06319 DNA topoisomerase I/S 22.3 89 0.0019 35.8 3.8 46 349-394 595-701 (860)
379 PF00578 AhpC-TSA: AhpC/TSA fa 22.2 3.7E+02 0.008 21.6 6.5 36 265-300 37-79 (124)
380 COG2835 Uncharacterized conser 22.2 65 0.0014 25.8 1.9 28 357-385 8-35 (60)
381 PRK11788 tetratricopeptide rep 22.2 45 0.00097 32.3 1.2 34 333-366 341-377 (389)
382 PRK00432 30S ribosomal protein 22.1 52 0.0011 24.9 1.3 23 359-383 22-44 (50)
383 COG1571 Predicted DNA-binding 22.0 42 0.00091 35.8 1.1 132 242-384 204-375 (421)
384 cd03008 TryX_like_RdCVF Trypar 21.8 3.5E+02 0.0077 24.4 6.8 23 251-278 27-49 (146)
385 PRK14973 DNA topoisomerase I; 21.6 85 0.0018 36.5 3.4 47 347-393 589-663 (936)
386 PRK07219 DNA topoisomerase I; 21.5 85 0.0018 35.7 3.4 17 346-362 602-628 (822)
387 PF04056 Ssl1: Ssl1-like; Int 21.3 2.4E+02 0.0051 27.0 5.8 59 242-304 94-154 (193)
388 PF07295 DUF1451: Protein of u 21.3 74 0.0016 29.1 2.4 35 354-389 109-143 (146)
389 PRK14873 primosome assembly pr 21.0 59 0.0013 36.3 2.0 38 344-388 390-434 (665)
390 PLN02400 cellulose synthase 20.9 61 0.0013 38.3 2.1 38 346-383 36-85 (1085)
391 PF15387 DUF4611: Domain of un 20.7 93 0.002 27.1 2.7 37 77-113 41-81 (96)
392 COG0041 PurE Phosphoribosylcar 20.7 2.9E+02 0.0064 26.1 6.1 61 265-325 14-100 (162)
393 COG2143 Thioredoxin-related pr 20.4 1.1E+02 0.0023 29.3 3.2 65 245-316 39-125 (182)
394 PF04566 RNA_pol_Rpb2_4: RNA p 20.3 92 0.002 24.6 2.4 25 311-335 1-32 (63)
395 PLN02234 1-deoxy-D-xylulose-5- 20.3 3E+02 0.0065 30.9 7.1 79 251-339 546-630 (641)
396 PRK11032 hypothetical protein; 20.2 61 0.0013 30.3 1.6 22 348-369 126-154 (160)
397 cd05295 MDH_like Malate dehydr 20.2 2E+02 0.0043 31.0 5.6 67 263-329 1-82 (452)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-52 Score=401.13 Aligned_cols=159 Identities=56% Similarity=1.025 Sum_probs=151.4
Q ss_pred ChhhhhhhcCCCCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCC---CCCCcEE
Q 039216 235 NPLLNFELKCPPGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDC---KAVPPRL 311 (394)
Q Consensus 235 d~L~~f~~~cppgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg---~~tVPqV 311 (394)
.++..|..+||||++.+||||||||||||+||++|+.||+||++++|.|+|||||||..|++||++++|. ..++|+|
T Consensus 116 ~~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrV 195 (281)
T KOG2824|consen 116 KLLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRV 195 (281)
T ss_pred cchhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeE
Confidence 4677999999999999999999999999999999999999999999999999999999999999999986 6889999
Q ss_pred EECCEEEecchhHHhHHHcCCchhhhccCCCCCCCCCCCCCCCcceeeCCCCCCcceeee---CCCccccCcccccCccc
Q 039216 312 FIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRSDGPCDGCAGVRFVLCFRCCGSHKVVT---GDGLASQCQECNENGLI 388 (394)
Q Consensus 312 FIdGkyIGGaDEL~eL~EsGeL~kLLk~~~~~~~~~~C~~CGG~RfVpC~~C~GS~K~~~---~~~~~lRC~~CNENGLi 388 (394)
||+|+||||+++|++|||.|+|.+||+++| ..+...|.+|||.||+||..||||||++. .+++++||+.|||||||
T Consensus 196 FV~GryIGgaeeV~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 196 FVKGRYIGGAEEVVRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred EEccEEeccHHHhhhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 999999999999999999999999999999 44567999999999999999999999998 45689999999999999
Q ss_pred cCCCCC
Q 039216 389 ICPYCC 394 (394)
Q Consensus 389 rCp~C~ 394 (394)
|||+|+
T Consensus 275 rCp~Cs 280 (281)
T KOG2824|consen 275 RCPVCS 280 (281)
T ss_pred eCCccC
Confidence 999997
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=3e-49 Score=350.93 Aligned_cols=140 Identities=56% Similarity=1.005 Sum_probs=134.3
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCC---CCCCcEEEECCEEEecchhHHhH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDC---KAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg---~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+||||||||||||+|||+|++||+||++++|.|+++||+||+++++||++++|. +.++|||||+|+||||++++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999874 58999999999999999999999
Q ss_pred HHcCCchhhhccCCCCCCCCCCCCCCCcceeeCCCCCCcceeeeCC----CccccCcccccCccccC
Q 039216 328 HEQGKLRPLFDGIPIDRSDGPCDGCAGVRFVLCFRCCGSHKVVTGD----GLASQCQECNENGLIIC 390 (394)
Q Consensus 328 ~EsGeL~kLLk~~~~~~~~~~C~~CGG~RfVpC~~C~GS~K~~~~~----~~~lRC~~CNENGLirC 390 (394)
|++|+|.++|+.++...+...|++|||.|||||++||||||++.++ +.++||++|||||||||
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 9999999999999887777889999999999999999999999887 46999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.88 E-value=9.2e-23 Score=168.85 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=84.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhC---CCCCCcEEEECCEEEecchhHHhH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLD---CKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellG---g~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.|+||+||++|+|++...|++|++||++++|.|+++||++|++.+++|++++| +.+++|||||+|+||||++++.+|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999986 368999999999999999999999
Q ss_pred HHcCCchhhhc
Q 039216 328 HEQGKLRPLFD 338 (394)
Q Consensus 328 ~EsGeL~kLLk 338 (394)
+++|+|.++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999985
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.83 E-value=4.9e-20 Score=152.29 Aligned_cols=88 Identities=19% Similarity=0.337 Sum_probs=80.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.+++||||+++. .-+.+||+|.+|+++|+.+||.|.++||..+++.+++|++++| +.++|+|||||++|||++++.+|
T Consensus 10 ~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg-~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 10 KENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN-WPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred ccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeChHHHHHH
Confidence 568999998864 2345799999999999999999999999999999999999986 88999999999999999999999
Q ss_pred HHcCCchhhh
Q 039216 328 HEQGKLRPLF 337 (394)
Q Consensus 328 ~EsGeL~kLL 337 (394)
+++|+|.++|
T Consensus 88 ~~~g~L~~~l 97 (97)
T TIGR00365 88 YQSGELQTLL 97 (97)
T ss_pred HHCcChHHhC
Confidence 9999999876
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.82 E-value=7e-20 Score=151.85 Aligned_cols=87 Identities=21% Similarity=0.409 Sum_probs=78.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHH---HHHHHHHHhCCCCCCcEEEECCEEEecchhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIE---FREELWKVLDCKAVPPRLFIKGRYIGGAAEV 324 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e---~reELkellGg~~tVPqVFIdGkyIGGaDEL 324 (394)
.+++|+||+++ +||+|.+++++|.+++|.|.++||+.++. ++++|.+++| +.++|+|||+|++|||++++
T Consensus 6 ~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 6 SEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC-SPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred ccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEECCEEEcCHHHH
Confidence 45889999999 69999999999999999999999998844 5667887775 99999999999999999999
Q ss_pred HhHHHcCCchhhhccCC
Q 039216 325 LTLHEQGKLRPLFDGIP 341 (394)
Q Consensus 325 ~eL~EsGeL~kLLk~~~ 341 (394)
++|+++|+|.++|+...
T Consensus 79 ~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 79 MALHISGSLVPMLKQAG 95 (99)
T ss_pred HHHHHcCCHHHHHHHhC
Confidence 99999999999997653
No 6
>PRK10824 glutaredoxin-4; Provisional
Probab=99.82 E-value=6.3e-20 Score=157.91 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.+++||||+++.+ -+.+||||.+++++|.++++.|.++||..+.+.+++|++++| ++|+|||||||+||||++++.+|
T Consensus 13 ~~~~Vvvf~Kg~~-~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg-~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 13 AENPILLYMKGSP-KLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred hcCCEEEEECCCC-CCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHHHHH
Confidence 5688999999621 234699999999999999999999999999999999999996 99999999999999999999999
Q ss_pred HHcCCchhhhccCC
Q 039216 328 HEQGKLRPLFDGIP 341 (394)
Q Consensus 328 ~EsGeL~kLLk~~~ 341 (394)
|.+|+|.++|+.+.
T Consensus 91 ~~~G~L~~lL~~~~ 104 (115)
T PRK10824 91 YQRGELQQLIKETA 104 (115)
T ss_pred HHCCCHHHHHHHHH
Confidence 99999999997654
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.81 E-value=1.7e-19 Score=152.53 Aligned_cols=88 Identities=19% Similarity=0.359 Sum_probs=81.5
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCC---cEEEEEcCC---CHHHHHHHHHHhCCCCCCcEEEECCEEEecc
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKV---IFFERDVSM---HIEFREELWKVLDCKAVPPRLFIKGRYIGGA 321 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV---~yeErDVSm---D~e~reELkellGg~~tVPqVFIdGkyIGGa 321 (394)
..++|+||+++ +||||.+++++|+.++| .|+++||+. +.+++++|.+++| +.+||+|||+|++|||+
T Consensus 11 ~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG-~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 11 ANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG-GRTVPRIFFGKTSIGGY 83 (108)
T ss_pred ccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC-CCCcCEEEECCEEEeCh
Confidence 45789999999 69999999999999999 799999986 5789999999997 88999999999999999
Q ss_pred hhHHhHHHcCCchhhhccCCC
Q 039216 322 AEVLTLHEQGKLRPLFDGIPI 342 (394)
Q Consensus 322 DEL~eL~EsGeL~kLLk~~~~ 342 (394)
+++++||.+|+|.++|+.+..
T Consensus 84 ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 84 SDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred HHHHHHHHcCCHHHHHHHccc
Confidence 999999999999999988743
No 8
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.78 E-value=7.6e-19 Score=136.73 Aligned_cols=79 Identities=30% Similarity=0.506 Sum_probs=75.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHHcC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQG 331 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~EsG 331 (394)
|+||+++ +||+|.+++++|+.++|.|.++||++++.+++++.+++| ..++|+|||+|++|||++++..|+++|
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g-~~~vP~i~i~g~~igg~~~~~~~~~~g 73 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG-RRTVPQIFIGDVHVGGCDDLYALDREG 73 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC-CCCcCEEEECCEEEcChHHHHHHHHcC
Confidence 6899999 799999999999999999999999999999999999886 899999999999999999999999999
Q ss_pred Cchhhh
Q 039216 332 KLRPLF 337 (394)
Q Consensus 332 eL~kLL 337 (394)
+|.++|
T Consensus 74 ~l~~~l 79 (79)
T TIGR02181 74 KLDPLL 79 (79)
T ss_pred ChhhhC
Confidence 999876
No 9
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.78 E-value=9.5e-19 Score=141.78 Aligned_cols=85 Identities=22% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.+++||||+++.. -...||+|.+++++|++++|.|.++||..+.+++++|++++| ..++|+|||+|++|||++++++|
T Consensus 6 ~~~~vvvf~k~~~-~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTP-EEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCC-CCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeCHHHHHHH
Confidence 4578999998621 123699999999999999999999999999999999999987 88999999999999999999999
Q ss_pred HHcCCch
Q 039216 328 HEQGKLR 334 (394)
Q Consensus 328 ~EsGeL~ 334 (394)
|++|+|+
T Consensus 84 ~~~g~L~ 90 (90)
T cd03028 84 HESGELQ 90 (90)
T ss_pred HHcCCcC
Confidence 9999984
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.77 E-value=2.5e-18 Score=136.31 Aligned_cols=81 Identities=32% Similarity=0.495 Sum_probs=77.2
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHHc
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~Es 330 (394)
+|+||+++ +|++|.+++.+|+.++|.|.++||+.+.+.++++.+++| ..++|+||++|++|||++++.+||.+
T Consensus 3 ~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g-~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG-RTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 69999999 699999999999999999999999999988999999886 88999999999999999999999999
Q ss_pred CCchhhhc
Q 039216 331 GKLRPLFD 338 (394)
Q Consensus 331 GeL~kLLk 338 (394)
|+|.++|+
T Consensus 76 g~l~~~~~ 83 (83)
T PRK10638 76 GGLDPLLK 83 (83)
T ss_pred CCHHHHhC
Confidence 99999884
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.73 E-value=2.4e-17 Score=126.05 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=70.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHHc
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~Es 330 (394)
+|+||+++ .|++|.+++.+|++++|.|.++||+.+.+.+++|.+++|...++|+|||+|++|||++++++||++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~ 74 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERK 74 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhC
Confidence 58999999 699999999999999999999999999889999998887444999999999999999999999998
Q ss_pred C
Q 039216 331 G 331 (394)
Q Consensus 331 G 331 (394)
|
T Consensus 75 g 75 (75)
T cd03418 75 G 75 (75)
T ss_pred c
Confidence 7
No 12
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.3e-17 Score=140.08 Aligned_cols=87 Identities=25% Similarity=0.513 Sum_probs=77.5
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC---HHHHHHHHHHhCCCCCCcEEEECCEEEecchhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH---IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEV 324 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD---~e~reELkellGg~~tVPqVFIdGkyIGGaDEL 324 (394)
.+++||||+++ .|++|.+++.+|..+++.+..+.++.+ .+++.+|.+++| .+++|+|||+|++|||++++
T Consensus 12 ~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg-~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 12 SENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG-QRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred hcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC-CCCCCEEEECCEEEcCHHHH
Confidence 67899999999 699999999999999998666665544 578888988876 88999999999999999999
Q ss_pred HhHHHcCCchhhhccCC
Q 039216 325 LTLHEQGKLRPLFDGIP 341 (394)
Q Consensus 325 ~eL~EsGeL~kLLk~~~ 341 (394)
++||.+|+|.++|+.+.
T Consensus 85 ~~lh~~G~L~~~l~~~~ 101 (104)
T KOG1752|consen 85 MALHKSGELVPLLKEAG 101 (104)
T ss_pred HHHHHcCCHHHHHHHhh
Confidence 99999999999998764
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.72 E-value=3.2e-17 Score=126.58 Aligned_cols=73 Identities=26% Similarity=0.512 Sum_probs=68.9
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHH
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHE 329 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~E 329 (394)
++|+||+++ .|++|.+|+.+|+.++|.|+++||..++..+++|.+++| ..++|+|||||++|||++++.+|++
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHhhcC
Confidence 479999999 699999999999999999999999999999999999986 7899999999999999999998864
No 14
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=6.8e-17 Score=150.80 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=81.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
..++||||+++.+ -...|++|++++.+|++++|.|.++||..+.+.+++|++++| ++|+|||||||++|||++++++|
T Consensus 111 ~~~~Vvvf~Kg~~-~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg-~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 111 RNHKILLFMKGSK-TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSN-WPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred hcCCEEEEEccCC-CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHHHHH
Confidence 6688999999621 123699999999999999999999999999999999999986 89999999999999999999999
Q ss_pred HHcCCchhhhcc
Q 039216 328 HEQGKLRPLFDG 339 (394)
Q Consensus 328 ~EsGeL~kLLk~ 339 (394)
+++|+|.++|..
T Consensus 189 ~~~G~L~~~l~~ 200 (204)
T PTZ00062 189 YESNSLRKVIPD 200 (204)
T ss_pred HHcCChhhhhhh
Confidence 999999999853
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.66 E-value=5e-16 Score=119.93 Aligned_cols=79 Identities=24% Similarity=0.518 Sum_probs=71.0
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCc--EEEEEcCCC---HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVI--FFERDVSMH---IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~--yeErDVSmD---~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
|++|+++ .||+|.+++.+|+++++. |..++|+.+ ..+++++.+++| ..++|+|||+|++|||++++.+
T Consensus 1 V~~f~~~------~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g~~igg~~~~~~ 73 (84)
T TIGR02180 1 VVVFSKS------YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG-QRTVPNIFINGKFIGGCSDLLA 73 (84)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHH
Confidence 6899999 599999999999999998 888887654 566778888876 8899999999999999999999
Q ss_pred HHHcCCchhhh
Q 039216 327 LHEQGKLRPLF 337 (394)
Q Consensus 327 L~EsGeL~kLL 337 (394)
|+++|+|.++|
T Consensus 74 ~~~~g~l~~~~ 84 (84)
T TIGR02180 74 LYKSGKLAELL 84 (84)
T ss_pred HHHcCChhhhC
Confidence 99999999876
No 16
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.65 E-value=8.1e-16 Score=118.86 Aligned_cols=79 Identities=27% Similarity=0.526 Sum_probs=71.4
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC---HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH---IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD---~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+|++|++. .||+|..++.+|+.+++.|..++++.+ ..++.++++++| ..++|+||++|++|||++++.+|
T Consensus 1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~~~P~v~~~g~~igg~~~~~~~ 73 (82)
T cd03419 1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG-QRTVPNVFIGGKFIGGCDDLMAL 73 (82)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHHH
Confidence 58999998 699999999999999999888888765 556788988886 89999999999999999999999
Q ss_pred HHcCCchhh
Q 039216 328 HEQGKLRPL 336 (394)
Q Consensus 328 ~EsGeL~kL 336 (394)
+++|+|.++
T Consensus 74 ~~~g~l~~~ 82 (82)
T cd03419 74 HKSGKLVKL 82 (82)
T ss_pred HHcCCccCC
Confidence 999999864
No 17
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.7e-16 Score=123.96 Aligned_cols=77 Identities=30% Similarity=0.428 Sum_probs=67.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.|+||+++ +||||.+++++|+.+|+.|.++|+.++. ..++.+++.. |.+++|+|||||++|||++++.+++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-GQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-CCCCcCEEEECCEEEeCcccHHHHH
Confidence 58999999 7999999999999999999999999997 4445555544 4999999999999999999999999
Q ss_pred HcCCch
Q 039216 329 EQGKLR 334 (394)
Q Consensus 329 EsGeL~ 334 (394)
..|.|.
T Consensus 75 ~~~~l~ 80 (80)
T COG0695 75 AKGKLD 80 (80)
T ss_pred hhccCC
Confidence 988763
No 18
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.62 E-value=3.6e-15 Score=109.75 Aligned_cols=72 Identities=35% Similarity=0.577 Sum_probs=67.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHE 329 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~E 329 (394)
+|+||+++ .|++|.+++.+|..+++.|.++|+..+.+.+++|++++| ..++|+||++|++|||++++++|++
T Consensus 1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~-~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG-WPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEecHHHHHHhhC
Confidence 58999999 599999999999999999999999999999999999886 7999999999999999999998874
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.61 E-value=2.9e-15 Score=115.18 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=62.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
+|+||+++ +||+|.+++++|+.++|.|.++||+.+. ..++++.++| ..++|+|||||++|||+++|.++.
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g-~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTG-AMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhC-CCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999 7999999999999999999999999887 3457777765 899999999999999999998763
No 20
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.3e-15 Score=125.75 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=84.1
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCC-CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFK-VIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~g-V~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
..++||||.+... -...|.++.++..||...| +.|..+||-.|+++|+.|++.++ |+|+||+||+|++|||+|-+.+
T Consensus 13 ~~n~VvLFMKGtp-~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~-WPT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 13 KENPVVLFMKGTP-EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN-WPTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred hcCceEEEecCCC-CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC-CCCCceeeECCEEeccHHHHHH
Confidence 5689999999965 3456999999999999999 89999999999999999999986 9999999999999999999999
Q ss_pred HHHcCCchhhhccC
Q 039216 327 LHEQGKLRPLFDGI 340 (394)
Q Consensus 327 L~EsGeL~kLLk~~ 340 (394)
|+++|+|+.+|+..
T Consensus 91 m~q~GELq~~l~~~ 104 (105)
T COG0278 91 MYQSGELQTLLKEA 104 (105)
T ss_pred HHHcchHHHHHHhc
Confidence 99999999999753
No 21
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.57 E-value=1.2e-14 Score=116.93 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=65.6
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCC-CCCCcEEEECCEEEecchhHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDC-KAVPPRLFIKGRYIGGAAEVL 325 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg-~~tVPqVFIdGkyIGGaDEL~ 325 (394)
|+||+++ +||+|.+|+++|+.+ ++.|.++|+..+...+++|.+++|. ..++|+|||||++|||+++|.
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence 7999999 699999999999998 4679999999877667889888862 279999999999999999999
Q ss_pred hHHHcC
Q 039216 326 TLHEQG 331 (394)
Q Consensus 326 eL~EsG 331 (394)
+|++++
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 998764
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.57 E-value=1.5e-14 Score=114.20 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=63.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.+++|+||+++ .|++|.+++++|+.+||.|+++||+.+... .+++.++| ..++|+|||||++|||+++|.++
T Consensus 6 ~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g-~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 6 KPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTG-ATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred CCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHC-CCCcCeEEECCEEEcCHHHHHHH
Confidence 45789999999 699999999999999999999999988554 56777665 89999999999999999998765
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.56 E-value=2.3e-14 Score=113.89 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=66.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEcCCCHHHHHHHHHHhCC-CCCCcEEEECCEEEecchhH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES-----FKVIFFERDVSMHIEFREELWKVLDC-KAVPPRLFIKGRYIGGAAEV 324 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes-----~gV~yeErDVSmD~e~reELkellGg-~~tVPqVFIdGkyIGGaDEL 324 (394)
+|+||+++ +|++|.+|+++|++ .+|.|.++||..+...+++|.+++|. ..++|+|||||++|||++++
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 68999999 69999999999999 89999999999987778889888862 37999999999999999999
Q ss_pred HhHHHc
Q 039216 325 LTLHEQ 330 (394)
Q Consensus 325 ~eL~Es 330 (394)
.++++.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 988754
No 24
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.53 E-value=2.1e-14 Score=121.14 Aligned_cols=88 Identities=25% Similarity=0.414 Sum_probs=73.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhC--------CCCCCcEEEECCEEEecch
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLD--------CKAVPPRLFIKGRYIGGAA 322 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellG--------g~~tVPqVFIdGkyIGGaD 322 (394)
.|.||+||+.|-++.-..+.++..||++++|.|+++||+++++.|++|++..| +.+.+||||++++|+|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 48899999999999999999999999999999999999999999999999884 3456689999999999999
Q ss_pred hHHhHHHcCCchhhhc
Q 039216 323 EVLTLHEQGKLRPLFD 338 (394)
Q Consensus 323 EL~eL~EsGeL~kLLk 338 (394)
++.+++|+|.|..+|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.51 E-value=7.6e-14 Score=104.07 Aligned_cols=60 Identities=30% Similarity=0.479 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyI 318 (394)
|+||++. +|++|.+++++|+++|++|+++||+.++..+++|++++| ..++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g-~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG-VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS-SSSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC-CCccCEEEECCEEC
Confidence 7899998 799999999999999999999999999999999999985 99999999999987
No 26
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-13 Score=128.32 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=84.0
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
..++|+||.++.+ -...|.+.+++..||++++|+|...||..|.++|+-|++.+. |+|+|||||+|++|||+|-+..|
T Consensus 137 ~a~~v~lFmKG~p-~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd-WPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 137 KAKPVMLFMKGTP-EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD-WPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred ccCeEEEEecCCC-CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC-CCCccceeECCEeccCcHHHHHH
Confidence 7789999999854 456699999999999999999999999999999999999985 99999999999999999999999
Q ss_pred HHcCCchhhhcc
Q 039216 328 HEQGKLRPLFDG 339 (394)
Q Consensus 328 ~EsGeL~kLLk~ 339 (394)
|++|+|...|+.
T Consensus 215 ~~~geL~~~l~~ 226 (227)
T KOG0911|consen 215 HEKGELVYTLKE 226 (227)
T ss_pred hhcccHHHHhhc
Confidence 999999999875
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.43 E-value=4.7e-13 Score=135.57 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=71.8
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHH--------HhCCCCCCcEEEECCEEEecc
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWK--------VLDCKAVPPRLFIKGRYIGGA 321 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELke--------llGg~~tVPqVFIdGkyIGGa 321 (394)
.+|+|||++ +||+|.+++++|+.+||+|+++||+.++...+.+.+ ++| ..+||||||||++|||+
T Consensus 2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g-~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEH-IRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCC-CCccCeEEECCEEEeCc
Confidence 369999999 799999999999999999999999988754432222 233 78999999999999999
Q ss_pred hhHHhHHHcCCchhhhccCCC
Q 039216 322 AEVLTLHEQGKLRPLFDGIPI 342 (394)
Q Consensus 322 DEL~eL~EsGeL~kLLk~~~~ 342 (394)
++++. .+|+|.++|++.+-
T Consensus 75 ~~l~~--~~g~l~~~~~~~~~ 93 (410)
T PRK12759 75 DNLMA--RAGEVIARVKGSSL 93 (410)
T ss_pred hHHHH--HhCCHHHHhcCCcc
Confidence 99987 89999999998654
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.31 E-value=7.4e-12 Score=96.85 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=58.0
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCE-EEecchh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGR-YIGGAAE 323 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGk-yIGGaDE 323 (394)
|+||+++ +|++|.+++++|+.++|.|+++||..++..+++++. +| ..++|+||++|. +|||++.
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g-~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QG-FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC-CcccCEEEECCCcEEeccCH
Confidence 6899999 799999999999999999999999999999999876 44 789999999775 9999975
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=98.11 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=59.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAE 323 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDE 323 (394)
+|+|||++ +|++|.++|.+|..+||.|+++||+.+++..++++. . +..++|+|+|++..|+|++.
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~-g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q-GFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-CCCCcCEEEECCEEEecCCH
Confidence 69999999 799999999999999999999999999988888876 4 48899999999999999954
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.01 E-value=3.5e-09 Score=78.41 Aligned_cols=66 Identities=32% Similarity=0.338 Sum_probs=60.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAE 323 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDE 323 (394)
.|+||+++ .|++|.+++.+|...++.|..+|+..+....+++.+++| ..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~-~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTP------WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG-QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCC------CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC-CCcccEEEECCEEEeeCCH
Confidence 48899999 599999999999999999999999999888888888886 7899999999999988854
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.96 E-value=5.5e-09 Score=77.38 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=60.1
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAE 323 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDE 323 (394)
+|++|+++ +|++|.+++.+|...++.|..+|+..+....+++.++.+ ..++|.|+++|..|+|++.
T Consensus 1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG-YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC-CcccCEEEECCEEEecCCH
Confidence 48899999 699999999999999999999999998888888888764 7899999999999999876
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.73 E-value=7.7e-08 Score=72.88 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=57.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE-CCEEEecchh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI-KGRYIGGAAE 323 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI-dGkyIGGaDE 323 (394)
+|+||+++ .|++|.+++.+|..+++.|..+|+..+....+++..+..+..++|+|++ +|..+.....
T Consensus 1 ~v~ly~~~------~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~ 68 (77)
T TIGR02200 1 TITVYGTT------WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSA 68 (77)
T ss_pred CEEEEECC------CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCH
Confidence 48999999 5999999999999999999999999998888888887634789999976 6677765543
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.51 E-value=3.6e-07 Score=68.70 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=48.6
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEe
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIG 319 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIG 319 (394)
+|++|+++ +|++|.+++.+|+.+ ++.|..+|+..+.+ +.+.+| -.++|+|+|+|++++
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~-i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSP------TCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYG-VMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECC------CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcC-CcccCEEEECCEEEE
Confidence 58999999 599999999999875 68999999987764 445554 678999999999876
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.31 E-value=5.2e-06 Score=64.87 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE--CCEEEecchhHHhHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI--KGRYIGGAAEVLTLH 328 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI--dGkyIGGaDEL~eL~ 328 (394)
++||+.+ .|++|.+|+.+|..+||.|+.+++..+.....++.++.+ ..++|.+.. +|..+.+...+....
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGG-KVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCC-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 6799998 699999999999999999999999877666778877654 789999977 367788777776543
No 35
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.9e-06 Score=73.95 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=81.2
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh-------CCCCCCcEEEECCEEEecchh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL-------DCKAVPPRLFIKGRYIGGAAE 323 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell-------Gg~~tVPqVFIdGkyIGGaDE 323 (394)
.|.+|++|.+|-+.+--.-..+..+|+...|.|.++|+.+....++++.... .|...+||||-+.+|.|+++.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 5889999999888888888999999999999999999999987777765543 236788999999999999999
Q ss_pred HHhHHHcCCchhhhccCCCC
Q 039216 324 VLTLHEQGKLRPLFDGIPID 343 (394)
Q Consensus 324 L~eL~EsGeL~kLLk~~~~~ 343 (394)
+.+..|+..|..+|.-++..
T Consensus 83 F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 99999999999999887754
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.18 E-value=1.4e-05 Score=61.52 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=53.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEEC----CEEEecchhHHh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIK----GRYIGGAAEVLT 326 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFId----GkyIGGaDEL~e 326 (394)
+|.||+.. +|++|.+++.+|+.+||.|++++++.. .+.+++ .. +..++|+++++ |..|.....+.+
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~~-~~-~~~~vP~l~~~~~~~~~~l~eS~~I~~ 70 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEIK-WS-SYKKVPILRVESGGDGQQLVDSSVIIS 70 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCch--hHHHHH-Hh-CCCccCEEEECCCCCccEEEcHHHHHH
Confidence 57899998 699999999999999999999998543 344553 33 47899999987 778877777665
Q ss_pred HH
Q 039216 327 LH 328 (394)
Q Consensus 327 L~ 328 (394)
..
T Consensus 71 yL 72 (77)
T cd03040 71 TL 72 (77)
T ss_pred HH
Confidence 43
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.16 E-value=6.4e-06 Score=59.06 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=54.4
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
.||+.. .|++|.+++.+|+.++|.|..++++.+.....+++..++ ..++|.|+++|..+++...+.+
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNP-LGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHH
Confidence 577777 599999999999999999999998765432225666664 7899999999999998877654
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.11 E-value=1.7e-05 Score=60.36 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=53.2
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEEC-CEEEecchhHHhHH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIK-GRYIGGAAEVLTLH 328 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFId-GkyIGGaDEL~eL~ 328 (394)
.||+.. .|++|.++|.+|..+|+.|+.+.+...... ...+..+ ..++|+|+++ |..+++...+.+..
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~-~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIG-AKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcC-CCccCEEEeCCCeEeehHHHHHHHH
Confidence 578887 699999999999999999999988765321 2233443 6789999997 89999998887643
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.03 E-value=2.6e-05 Score=62.79 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEEC-CEEEecchh
Q 039216 245 PPGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIK-GRYIGGAAE 323 (394)
Q Consensus 245 ppgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFId-GkyIGGaDE 323 (394)
+|...+.++||+.. .|++|.+++.+|..+|+.|+.++++... ..+++..+.+ ..++|.+.++ |..+.....
T Consensus 12 ~~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np-~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 12 PPPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNP-QGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCC-CCCcCEEEECCCCEEECHHH
Confidence 34456889999988 7999999999999999999999887643 2345666654 6789999998 788877766
Q ss_pred HHhH
Q 039216 324 VLTL 327 (394)
Q Consensus 324 L~eL 327 (394)
+.+.
T Consensus 84 I~~y 87 (89)
T cd03055 84 ICEY 87 (89)
T ss_pred HHHh
Confidence 6543
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.83 E-value=8.4e-05 Score=56.12 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=53.1
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
++||+.. +|++|.+++.+|+.+|+.|+.++++... ...++.+..+ ..++|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNP-YGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence 4689888 7999999999999999999998887542 2345666553 67999998888877776666554
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.81 E-value=2.5e-05 Score=66.08 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLD 303 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellG 303 (394)
|+||+++ +|++|++++++|+++|+.|+++|+..++..+++|.++++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 5799999 799999999999999999999999999777777776653
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.71 E-value=3.5e-05 Score=63.81 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLD 303 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellG 303 (394)
|+||+++ +|++|++++.+|+++||.|+++|+..++...++|.++++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 5799999 799999999999999999999999988766677777664
No 43
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.64 E-value=0.00015 Score=54.25 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEE-CCEEEecchhHH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFI-KGRYIGGAAEVL 325 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFI-dGkyIGGaDEL~ 325 (394)
.||+.. .|++|.+++.+|..+++.|+.+.++... ....++.++.+ ..++|.+.+ +|..+.....+.
T Consensus 2 ~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~l~es~aI~ 70 (74)
T cd03051 2 KLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP-AGTVPVLELDDGTVITESVAIC 70 (74)
T ss_pred EEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC-CCCCCEEEeCCCCEEecHHHHH
Confidence 688888 6999999999999999999888886532 23456776654 679999997 666666555544
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.64 E-value=0.00021 Score=54.57 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEEC-CEEEecchhHH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIK-GRYIGGAAEVL 325 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFId-GkyIGGaDEL~ 325 (394)
+||++. .|++|.+++.+|+.+|+.|+.++++... ...+++++.+ ..++|.+..+ |..|.....+.
T Consensus 2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np-~~~vP~L~~~~g~~l~eS~aI~ 67 (71)
T cd03060 2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASP-KGTVPVLVLGNGTVIEESLDIM 67 (71)
T ss_pred EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCC-CCCCCEEEECCCcEEecHHHHH
Confidence 689888 5999999999999999999999887642 2356776654 7899999996 88776665554
No 45
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.57 E-value=0.00015 Score=63.42 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|+||+++ +|++|++++++|+++||.|.++|+..++..+++|.+++
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 7899999 79999999999999999999999998876666666554
No 46
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.48 E-value=0.00047 Score=52.29 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=53.3
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
+.||+.. .|++|.+++.+|+.+|+.|+.+.++.. .....++.+... ..++|.+.++|..+.....+..
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP-QHTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc-CCCCCEEEECCEEEEcHHHHHH
Confidence 3688888 699999999999999999999888753 334567777654 6689999988877766665544
No 47
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.47 E-value=0.00036 Score=54.08 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=56.0
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 254 FYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 254 LYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
||... .|++|.+|+-+|+-+||.|+.++++.... +.++.++.+ ..++|.+..+|..|.+...+.+..
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p-~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP-KGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST-TSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc-cccceEEEECCEEEeCHHHHHHHH
Confidence 57777 59999999999999999999999986643 567777664 789999999999999988876553
No 48
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.46 E-value=0.0009 Score=51.28 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=42.6
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh----CC--CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES----FK--VIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGR 316 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes----~g--V~yeErDVSmD~e~reELkellGg~~tVPqVFIdGk 316 (394)
.|+||+++ .|++|..++.+|+. ++ +.+..+|+..+.+. .+..| -.++|.++++|+
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSP------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYG-IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECC------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcC-CccCCEEEECCE
Confidence 47899998 59999999999864 33 67788888777643 33344 678999999997
No 49
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.46 E-value=0.0014 Score=52.44 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=43.7
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKG 315 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdG 315 (394)
+|++||+. +|.-|..++.+|+.. .+.+..+||..|+. |.+++| ..+|+|+++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC--TSTSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc--CCCCEEEEcC
Confidence 58999999 899999999999964 46799999998886 555664 6899999999
No 50
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.43 E-value=0.00029 Score=59.82 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|.||+.+ +|++|++|+++|+.+||.|.++|+..++..+++|.+++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 5799998 79999999999999999999999999987777777665
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.39 E-value=0.0008 Score=50.47 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
.||+.. .|++|.+++.+|+.+|+.|+.++++.. .....++.++.. ..++|.+..+|..|.....+..
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP-NGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC-CCCCCEEEECCEEEEcHHHHHH
Confidence 578887 699999999999999999999998753 234466666553 6789999999988876666543
No 52
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.36 E-value=0.00041 Score=58.87 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=39.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|.||+++ +|+.|++++++|+.+||.|+.+|+..++.-+++|.+.+
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 6799999 79999999999999999999999998866666666554
No 53
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.17 E-value=0.00058 Score=60.07 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=36.3
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWK 300 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELke 300 (394)
|+||+++ +|+.|++++++|+++||.|+++|+..++--+++|..
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~ 44 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILA 44 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHH
Confidence 7899999 799999999999999999999999887544444443
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.17 E-value=0.00062 Score=59.81 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKV 301 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkel 301 (394)
|+||+++ .|+.|++++++|+.+||.|.++|+..++--.++|..+
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~ 45 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSI 45 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHH
Confidence 7899999 7999999999999999999999999885444444443
No 55
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.17 E-value=0.0011 Score=54.23 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEe
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIG 319 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIG 319 (394)
.-.|.+|++. +|++|..++.+++.. +|.|..+|++.+++.. ..+| -..+|.++|||+.++
T Consensus 13 pv~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a----~~~~-V~~vPt~vidG~~~~ 77 (89)
T cd03026 13 PINFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEV----EERG-IMSVPAIFLNGELFG 77 (89)
T ss_pred CEEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHH----HHcC-CccCCEEEECCEEEE
Confidence 3468899988 699999999988765 7899999998776433 3343 668999999998654
No 56
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.13 E-value=0.0036 Score=47.80 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 260 RGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 260 rgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.++...|++|.+++.+|+.+|+.|+.+++.... + +...++|.+.++|..+.+...+....
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~-~p~g~vP~l~~~g~~l~es~~I~~yL 69 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------R-SPTGKLPFLELNGEKIADSEKIIEYL 69 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------c-CCCcccCEEEECCEEEcCHHHHHHHH
Confidence 355668999999999999999999999997643 2 23568999999999999988876554
No 57
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.06 E-value=0.0007 Score=57.23 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=38.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|+||+.+ +|..|++++++|+.+|+.|.++|+..++--.++|.+++
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 5799999 79999999999999999999999998865555555544
No 58
>PHA02125 thioredoxin-like protein
Probab=96.98 E-value=0.0032 Score=49.22 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyI 318 (394)
||+|+++| |+.|+.++.+|+...+.|..+|...+. ++....+ -.++|.+. +|+.+
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~-v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHH-IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcC-CceeCeEE-CCEEE
Confidence 78899995 999999999998765555555554544 4555554 67899876 66533
No 59
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.92 E-value=0.0051 Score=47.10 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=50.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+.+|+.. .|++|.+++.+|+.+|+.|+.++++... -..+++++.....++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 3578777 6999999999999999999998876541 1234555443236899998888777776666544
No 60
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.90 E-value=0.0013 Score=56.61 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=37.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|+||+.+ .|..|++++++|+.+|+.|+++|+..++--+++|+.++
T Consensus 2 i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 2 IIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred EEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 7899999 89999999999999999999999988854444444443
No 61
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.76 E-value=0.0084 Score=45.74 Aligned_cols=70 Identities=13% Similarity=-0.061 Sum_probs=54.1
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
+.+|+.. .|++|.+++-+|..+|+.|+.+.++... ....++.++.. ..++|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P-~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNP-FGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 5788887 5999999999999999999998887542 22355666554 678999998888887777765543
No 62
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.62 E-value=0.0017 Score=56.54 Aligned_cols=50 Identities=32% Similarity=0.725 Sum_probs=40.9
Q ss_pred CCCCCCCCCCcceeeCCCCCCcceeeeCCC----ccccCcccccCccccCCCCC
Q 039216 345 SDGPCDGCAGVRFVLCFRCCGSHKVVTGDG----LASQCQECNENGLIICPYCC 394 (394)
Q Consensus 345 ~~~~C~~CGG~RfVpC~~C~GS~K~~~~~~----~~lRC~~CNENGLirCp~C~ 394 (394)
....|..|.|.+...|..|+|+-.++..-+ ...+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 356899999999999999999966653222 26799999999999999993
No 63
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.60 E-value=0.017 Score=45.44 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCchHHHHHHH----HHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCE--EEecc
Q 039216 265 TFEDCSSVRFL----LESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGR--YIGGA 321 (394)
Q Consensus 265 TCpdCkrVR~I----Les~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGk--yIGGa 321 (394)
+|++|..+.++ +..+++.++.+|+ .+. +++ ..+| -.++|.++|||+ +.|..
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~yg-v~~vPalvIng~~~~~G~~ 65 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYG-VMSVPALVINGKVVFVGRV 65 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT--SSSSEEEETTEEEEESS-
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcC-CCCCCEEEECCEEEEEecC
Confidence 59999977765 5577999999998 332 233 3344 789999999997 45533
No 64
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.58 E-value=0.015 Score=44.88 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=52.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
++||... .++.|.+++-+|...|+.|+.+.++.+ .+..++.... ...++|.+..+|..|.....+...
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~-p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM-LFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC-CCCCCCEEEECCEEEEcHHHHHHH
Confidence 5778776 479999999999999999999988763 3445565544 257899999999888777766544
No 65
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.57 E-value=0.0083 Score=46.86 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=52.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
+++|... .|+.|.+|+-+|+.+|+.|+.+.++... ....++.++.. ..++|.+..+|..+.....+..
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP-~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP-TGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc-CCCCCEEEECCEEEEcHHHHHH
Confidence 4688887 6899999999999999999988886542 23356777664 6799999999987776666543
No 66
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.52 E-value=0.011 Score=46.64 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCCCchHHHH----HHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSV----RFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrV----R~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyI 318 (394)
|.+|+ +| |+.|+.+ +.+++.+++.+..++|+...+ ..+ +| -.++|.++|||+.+
T Consensus 3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~-v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AG-VTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cC-CCcCCEEEECCEEE
Confidence 56666 63 9999999 667888899999999983222 222 33 78999999999754
No 67
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.51 E-value=0.0073 Score=60.73 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=64.6
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH-
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH- 328 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~- 328 (394)
=.+|||.-- |||+|.+||++|.=+++.|..+.|+ +-.|++++= + ....||.|.|.|+.+-...-|..+.
T Consensus 89 L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~-S-sykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 89 LDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKW-S-SYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred ceEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhccc-c-ccccccEEEeccceechhHHHHHHHH
Confidence 469999877 8999999999999999999998885 444666642 2 3678999999998766665555443
Q ss_pred -----HcCCchhhhccCCCC
Q 039216 329 -----EQGKLRPLFDGIPID 343 (394)
Q Consensus 329 -----EsGeL~kLLk~~~~~ 343 (394)
....|.++++-.|+.
T Consensus 159 TyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 159 TYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHhccCCCCHHHHHHhcccc
Confidence 345788888887753
No 68
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.49 E-value=0.01 Score=44.61 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
++|+.. .++.|.+++.+|+.+||.|+.+.+++.. ....++.++.. ..++|.+..+|..+.....+..
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP-QGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC-CCCCCEEEECCEEEEcHHHHHH
Confidence 467666 4789999999999999999998887642 23356666553 6799999999888776665543
No 69
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.43 E-value=0.026 Score=47.26 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=56.5
Q ss_pred cEEEEEecCCC--CCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 251 SVIFYTTTLRG--IRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 251 kVVLYTTSLrg--IRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.+-+|.+.-++ -...|++|+++|-+|..+||.|+..+|++... -+++.++.. ...+|.+..+|..|.....+.+..
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP-~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAP-GTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHHH
Confidence 35566554332 13579999999999999999999988876531 144666653 568999999999888888776654
Q ss_pred H
Q 039216 329 E 329 (394)
Q Consensus 329 E 329 (394)
+
T Consensus 83 d 83 (91)
T cd03061 83 E 83 (91)
T ss_pred H
Confidence 3
No 70
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.22 E-value=0.025 Score=43.03 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=50.1
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+||... .++.|.+++-+|+.+|+.|+.+.++.......++.... ...++|.+..+|..|.....+...
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL-PFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC-cCCCCCEEEECCEEEEecHHHHHH
Confidence 577666 47899999999999999999998875432223344433 367899999998888776665543
No 71
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.20 E-value=0.025 Score=43.96 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=51.4
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEEC---CEEEecchhHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIK---GRYIGGAAEVLT 326 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFId---GkyIGGaDEL~e 326 (394)
+.||+.. . ++|.+++.+|+..|+.|+.+.++.. .....++.++.. ..++|.+..+ |..|.....+..
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~g~~l~eS~aI~~ 73 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP-NGRIPAIVDHNGTPLTVFESGAILL 73 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc-CCCCCEEEeCCCCceEEEcHHHHHH
Confidence 5788766 4 9999999999999999988777643 334466766653 6789999887 777776666654
Q ss_pred H
Q 039216 327 L 327 (394)
Q Consensus 327 L 327 (394)
.
T Consensus 74 y 74 (81)
T cd03048 74 Y 74 (81)
T ss_pred H
Confidence 4
No 72
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.14 E-value=0.019 Score=43.74 Aligned_cols=66 Identities=15% Similarity=-0.030 Sum_probs=47.9
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHh--CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE-CCEEEecchhHHh
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLES--FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI-KGRYIGGAAEVLT 326 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes--~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI-dGkyIGGaDEL~e 326 (394)
.||+.. .|++|.+++.+|.. .++.|+.+.++... ...++.... ...++|.+.. +|..+.....+.+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~-p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPWS-DDESLLAVN-PLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCccc-CChHHHHhC-CCCCCCEEEECCCCEEECHHHHHh
Confidence 577776 59999999999999 89999998886431 223455544 3678999875 7777766655543
No 73
>PRK10387 glutaredoxin 2; Provisional
Probab=96.12 E-value=0.024 Score=50.87 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=52.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EECCEEEecchhHHhHHHc
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRL-FIKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqV-FIdGkyIGGaDEL~eL~Es 330 (394)
+.||+.. .||+|.+|+-+|+.+||.|+.++++..... ..+ ...+ ..+||.+ .-+|..|.....|....++
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~-~~~p-~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TPI-RMIG-QKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHH-HhcC-CcccceEEecCCeEecCHHHHHHHHHH
Confidence 4688877 699999999999999999999998655322 222 3332 5799998 5688898888887666543
No 74
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.11 E-value=0.023 Score=38.14 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHH-----hCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLE-----SFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKG 315 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILe-----s~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdG 315 (394)
|++|..+ .|++|.+++..|. ..++.|..+|+.........+.. . ....+|.+++.+
T Consensus 1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR-Y-GVGGVPTLVVFG 61 (69)
T ss_pred CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh-C-CCccccEEEEEe
Confidence 4567666 5999999999999 67899999999988765544222 2 367899987765
No 75
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.02 E-value=0.022 Score=52.24 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=51.6
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE-ECCEEEecchhHHhHHHc
Q 039216 254 FYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLF-IKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 254 LYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVF-IdGkyIGGaDEL~eL~Es 330 (394)
||+.. .||+|.+|+-+|..+|+.|+.+++..+.. ... .++. ...++|.+. .+|..|.+...+.+..++
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~-~~~n-p~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETP-IRMI-GAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hhH-HHhc-CCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 67766 69999999999999999999998865432 122 3333 357899997 788999998888765443
No 76
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.94 E-value=0.011 Score=50.32 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWK 300 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELke 300 (394)
|+||+.+ +|.-|++++++|+.+++.|.++|+..++--.++|..
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~ 43 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRE 43 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHH
Confidence 5789999 899999999999999999999999887433344433
No 77
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.94 E-value=0.023 Score=47.86 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=39.8
Q ss_pred CcEEEEE-ecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 250 ESVIFYT-TTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 250 ~kVVLYT-TSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
..||||+ ++ .|++|+.++.+|+.. .+.|..+|++.++ ++...+| -.++|.+++
T Consensus 23 ~~vvv~f~a~------wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~-v~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSSKE------GCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG-VERVPTTIF 81 (113)
T ss_pred eEEEEEeCCC------CCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC-CCcCCEEEE
Confidence 4477775 45 499999999999755 3678999998776 4555554 788999887
No 78
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.92 E-value=0.055 Score=40.35 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHh-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE--CCEE
Q 039216 265 TFEDCSSVRFLLES-----FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI--KGRY 317 (394)
Q Consensus 265 TCpdCkrVR~ILes-----~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI--dGky 317 (394)
.|+.|..+..+|+. .++.+..+|++.+..+...+ + -..+|.+++ +|+.
T Consensus 21 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~-v~~~P~~~~~~~g~~ 75 (93)
T cd02947 21 WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEY----G-VRSIPTFLFFKNGKE 75 (93)
T ss_pred CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhc----C-cccccEEEEEECCEE
Confidence 69999999999987 78899999999877654443 3 567998766 7763
No 79
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.92 E-value=0.011 Score=50.50 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|+||+.+ +|.-|++++.+|+++++.|.++|+..++--.++|.+++
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 5789998 89999999999999999999999988854445555444
No 80
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.012 Score=51.27 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=38.6
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
.|+||... .|.-|+.++++|+.+||.|.++|+..++--+++|.+++
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 38899999 79999999999999999999999988855555555443
No 81
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.73 E-value=0.077 Score=41.03 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=50.9
Q ss_pred EEEEEec-CCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 252 VIFYTTT-LRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 252 VVLYTTS-LrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
++||... ..++...+++|.+|+.+|+..|+.|+.+.++.- ... ...++|.+..+|+.|.....+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~-p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS-PKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC-CCCCCCEEEECCEEEcCHHHHHHHH
Confidence 3555543 234455689999999999999999998888642 222 3678999999999998888776543
No 82
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.58 E-value=0.033 Score=43.77 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=49.2
Q ss_pred CCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEEC-CEEEecchhHHhHH
Q 039216 261 GIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIK-GRYIGGAAEVLTLH 328 (394)
Q Consensus 261 gIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFId-GkyIGGaDEL~eL~ 328 (394)
+.+..+++|.+++.+|..+|+.|+.+.++.. .....++ .+. ...++|.+..+ |..|.+...+.+..
T Consensus 11 ~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~-p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 11 PVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG-GFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC-CCceeCeEEECCCCEEeCHHHHHHHH
Confidence 4567799999999999999999998887654 2223334 333 36789999888 88888877776553
No 83
>PRK10853 putative reductase; Provisional
Probab=95.52 E-value=0.018 Score=49.92 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVL 302 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkell 302 (394)
|+||+.. .|.-|++++++|+.+||.|+.+|+-.++--.++|.+.+
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 6799988 89999999999999999999999988754444554443
No 84
>PRK10026 arsenate reductase; Provisional
Probab=95.32 E-value=0.026 Score=50.87 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=37.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWK 300 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELke 300 (394)
.|+||+.+ .|.-|++++++|+++|+.|+++|+..++--+++|..
T Consensus 3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~ 46 (141)
T PRK10026 3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVK 46 (141)
T ss_pred EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHH
Confidence 58899999 899999999999999999999999887543444443
No 85
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.28 E-value=0.028 Score=49.42 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=32.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI 292 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~ 292 (394)
.|+||... .|.-|++++++|+.+||.|+.+|+-.++
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 47899988 8999999999999999999999998763
No 86
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.24 E-value=0.068 Score=43.24 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=37.4
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHH------Hh---CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLL------ES---FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~IL------es---~gV~yeErDVSmD~e~reELkellGg~~tVPqVF 312 (394)
-+|.|+++ +|++|+.+...+ .. -++.+..+|++.+.....++...++ -.++|.++
T Consensus 14 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~-i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG-VFGPPTYL 77 (104)
T ss_pred EEEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC-CCCCCEEE
Confidence 35556666 599999887443 11 1677888898876555566777665 77899764
No 87
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.19 E-value=0.11 Score=39.93 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+||... .++.|.+++-+|+..|+.|+.+.++.. .....++..+.. ..++|.+..+|..|.....+...
T Consensus 2 ~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINP-FGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCc-CCCCCEEEECCEEEEcHHHHHHH
Confidence 578877 589999999999999999998887643 223346666553 67999998888776665555443
No 88
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.04 E-value=0.052 Score=56.64 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=46.4
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEe
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIG 319 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIG 319 (394)
+.-.|.+|+|. +||+|-.++.+++.+ +|..+.+|.+..+++. ..++ ..+||.+||||+.++
T Consensus 117 ~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~----~~~~-v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 117 GPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEV----EALG-IQGVPAVFLNGEEFH 182 (515)
T ss_pred CCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHH----HhcC-CcccCEEEECCcEEE
Confidence 34568899999 899999999998765 5667777777776544 3333 569999999998654
No 89
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=94.87 E-value=0.11 Score=40.09 Aligned_cols=67 Identities=12% Similarity=-0.068 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHH-HHHHHHHHhCCCCCCcEEEEC-CEEEecchhHHh
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIE-FREELWKVLDCKAVPPRLFIK-GRYIGGAAEVLT 326 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e-~reELkellGg~~tVPqVFId-GkyIGGaDEL~e 326 (394)
++|+.. .|++|.+++-+|+..|+.|+.+.|+...+ ...+++++.. ..++|.+..+ |..|.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP-~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFP-LGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCC-CCCCCEEEcCCCCEEeeHHHHHH
Confidence 367655 58999999999999999999998886532 2345666653 6799999885 766655555443
No 90
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.87 E-value=0.081 Score=49.07 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=41.5
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKG 315 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdG 315 (394)
-.|++|+++ +|++|..++.+|+.+ .|.+..+|+..++++.. .+| -.++|.++|++
T Consensus 135 v~I~~F~a~------~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~----~~~-V~~vPtl~i~~ 194 (215)
T TIGR02187 135 VRIEVFVTP------TCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE----KYG-VMSVPKIVINK 194 (215)
T ss_pred cEEEEEECC------CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH----HhC-CccCCEEEEec
Confidence 357778888 499999999998864 46677888887765443 343 67899998875
No 91
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.78 E-value=0.12 Score=44.47 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=39.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHH----HhCCCcEEEEEcCCCH--H-----HHHHHHHHhC---CCCCCcEE--EECC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLL----ESFKVIFFERDVSMHI--E-----FREELWKVLD---CKAVPPRL--FIKG 315 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~IL----es~gV~yeErDVSmD~--e-----~reELkellG---g~~tVPqV--FIdG 315 (394)
||.|+.+ +||+|+.+.-+| +..++.+..+|++.+. + -..+++...+ +-..+|.+ |-+|
T Consensus 27 iv~f~~~------~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 27 TFFIGRK------TCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred EEEEECC------CChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 5555555 699999966555 4556889999998653 1 1234444432 13458975 6788
Q ss_pred EEEecc
Q 039216 316 RYIGGA 321 (394)
Q Consensus 316 kyIGGa 321 (394)
+.++..
T Consensus 101 k~v~~~ 106 (122)
T TIGR01295 101 KQVSVR 106 (122)
T ss_pred eEEEEE
Confidence 765443
No 92
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=94.74 E-value=0.12 Score=47.08 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
..+.||+.. .|++|.+|+-+|+..|+.|+.+.|+.. ....++..+.. ..+||.+..+|..|--...|..
T Consensus 9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP-~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNP-YQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCC-CCCCCEEEECCEEeeCHHHHHH
Confidence 357899877 599999999999999999999998754 22356666653 5799999999887766666544
No 93
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.1 Score=43.62 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC-HHHHHHHHHH----------hCCCCCCcEEEEC-CEEEec
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH-IEFREELWKV----------LDCKAVPPRLFIK-GRYIGG 320 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD-~e~reELkel----------lGg~~tVPqVFId-GkyIGG 320 (394)
++|.+. .||+|..+...|++.+|.|+.++|... +-+++-|+-+ ..|...+|.+.++ |+.|=|
T Consensus 5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 788888 599999999999999999999999766 2233322211 1246789998765 444443
Q ss_pred chhH
Q 039216 321 AAEV 324 (394)
Q Consensus 321 aDEL 324 (394)
+++
T Consensus 79 -~Dl 81 (85)
T COG4545 79 -DDL 81 (85)
T ss_pred -chh
Confidence 443
No 94
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.63 E-value=0.073 Score=55.51 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEe
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIG 319 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIG 319 (394)
+.-.|.+|.|. +||+|-.++.+++.+ +|..+.+|.+..+++.+ .++ ..+||.+||||+.+.
T Consensus 116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~----~~~-v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE----ARN-IMAVPTVFLNGEEFG 181 (517)
T ss_pred CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH----hcC-CcccCEEEECCcEEE
Confidence 33568899999 899999999998754 56678888887775544 333 669999999997554
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.55 E-value=0.14 Score=41.21 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh------CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE--ECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES------FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLF--IKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes------~gV~yeErDVSmD~e~reELkellGg~~tVPqVF--IdGkyI 318 (394)
+++|+++ .|+.|..+..+|+. .++.+..+|++.+.++. ..++ -..+|.++ -+|+.+
T Consensus 17 lv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~----~~~~-v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA----EAAG-IMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHH----HHCC-CeeccEEEEEECCeEE
Confidence 4455555 59999999988876 45788999998887543 3443 67889764 466654
No 96
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.40 E-value=0.17 Score=39.22 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=49.5
Q ss_pred CCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH-HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 261 GIRKTFEDCSSVRFLLESFKVIFFERDVSMHI-EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 261 gIRkTCpdCkrVR~ILes~gV~yeErDVSmD~-e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
+-+..+++|.+++-+|+.+|+.|+.+.++... ....++.++.. ..++|.+..+|..|.....+..
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSP-TGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCC-CCcCCEEEECCEEEEcHHHHHH
Confidence 34568999999999999999999998887542 23356666553 6799999999987776665543
No 97
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=94.23 E-value=0.19 Score=37.98 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=45.6
Q ss_pred chHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 267 EDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 267 pdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
+.|.+++-+|...|+.|+.+.++.. .....++.++.. ..++|.+..+|..|.....+....
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINP-LGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 4688999999999999998887653 122355555543 678999999998888777765543
No 98
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=94.13 E-value=0.2 Score=38.37 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=47.7
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEEC-CEEEecchhHHhH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIK-GRYIGGAAEVLTL 327 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFId-GkyIGGaDEL~eL 327 (394)
.||+.. .+ .|.+++.+|..+|+.|+.+.++... ....++.++.. ..++|.+..+ |..+.....+.+.
T Consensus 2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np-~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP-KGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC-CCCCCEEEECCCcEEEcHHHHHHH
Confidence 477766 23 4789999999999999888776542 23466776654 7899999887 7766666555443
No 99
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=93.99 E-value=0.28 Score=47.21 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=56.7
Q ss_pred EEEEEecCCC--CCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHH
Q 039216 252 VIFYTTTLRG--IRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHE 329 (394)
Q Consensus 252 VVLYTTSLrg--IRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~E 329 (394)
|-||.+.... ....||+|++|+.+|..+|+.|+.+.|+.... .+++.++.. ..++|.+..+|..|.....|.+..+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP-~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAP-GTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCc-CCCCCEEEECCEEeecHHHHHHHHH
Confidence 4556555211 12579999999999999999999888876532 356666653 5789999989999888888776655
Q ss_pred c
Q 039216 330 Q 330 (394)
Q Consensus 330 s 330 (394)
.
T Consensus 81 e 81 (236)
T TIGR00862 81 E 81 (236)
T ss_pred H
Confidence 3
No 100
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.96 E-value=0.12 Score=43.29 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHH
Q 039216 265 TFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKV 301 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkel 301 (394)
+|.-|++++++|+.+|+.|..+|+..++--+++|.++
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~ 41 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELREL 41 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHH
Confidence 7999999999999999999999999886545555444
No 101
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=93.89 E-value=0.073 Score=41.03 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHhCCCcEEEEEcCC--C-HHHHHHHHHHhCCCCCCcEEEE-CCEEEecchhHHhHHH
Q 039216 266 FEDCSSVRFLLESFKVIFFERDVSM--H-IEFREELWKVLDCKAVPPRLFI-KGRYIGGAAEVLTLHE 329 (394)
Q Consensus 266 CpdCkrVR~ILes~gV~yeErDVSm--D-~e~reELkellGg~~tVPqVFI-dGkyIGGaDEL~eL~E 329 (394)
||+|.+++-+|+.+|+.|+..-+.. . .....++.++.+ ..++|.+.. +|+.|.....+.+..+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p-~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP-RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 8999999999999999988766632 1 222256777765 789999998 8999988877766543
No 102
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.039 Score=56.89 Aligned_cols=49 Identities=35% Similarity=0.695 Sum_probs=39.5
Q ss_pred CCCCCCCCCc------ceeeCCCCCCcceeeeCC--C---ccccCcccccCccc---cCCCCC
Q 039216 346 DGPCDGCAGV------RFVLCFRCCGSHKVVTGD--G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~------RfVpC~~C~GS~K~~~~~--~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
...|..|.|. .-..|+.|||+-.+.... + ....|+.||=.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 3479999999 567999999997766444 3 48899999999987 599994
No 103
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=93.64 E-value=0.35 Score=36.87 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=48.8
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVL 325 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~ 325 (394)
.+|... ..+.+.+++-+|+.+|+.|+.+.++.. .....++.++.. ..++|.+..+|..|.....+.
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP-~~~vP~L~~~~~~l~eS~aI~ 69 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNP-NGRVPVLEDGDFVLWESNAIL 69 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCC-CCCCCEEEECCEEEECHHHHH
Confidence 577666 468999999999999999998887643 223456666553 679999988887776555543
No 104
>PRK10767 chaperone protein DnaJ; Provisional
Probab=93.36 E-value=0.064 Score=54.25 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|.+ +|...+.|...-.+|.-++..++|+.-|
T Consensus 33 HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (371)
T PRK10767 33 HPDRNPG---DKEAEEKFKEIKEAYEVLSDPQKRAAYD 67 (371)
T ss_pred CCCCCCC---cHHHHHHHHHHHHHHHHhcchhhhhHhh
Confidence 4998864 4777788988888998888888776444
No 105
>PRK14300 chaperone protein DnaJ; Provisional
Probab=93.24 E-value=0.066 Score=54.39 Aligned_cols=48 Identities=31% Similarity=0.752 Sum_probs=34.6
Q ss_pred CCCCCCCCcc------eeeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVR------FVLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~R------fVpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+ ...|+.|+|+-+++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 146 VKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred cccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 4688887765 468999999877765433 25578899888855 688883
No 106
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.17 E-value=0.21 Score=52.89 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHh----C-CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLES----F-KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGR 316 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes----~-gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGk 316 (394)
+.-.|.+|.+. +|++|-.+.++++. . +|.++.+|++..+++.+ .++ -.++|.+||||+
T Consensus 476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~----~~~-v~~vP~~~i~~~ 538 (555)
T TIGR03143 476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKD----EYG-IMSVPAIVVDDQ 538 (555)
T ss_pred CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHH----hCC-ceecCEEEECCE
Confidence 34467888888 79999998887654 3 79999999998875433 333 678999999996
No 107
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.085 Score=53.93 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=15.1
Q ss_pred ccccCcccccCccccCCCCC
Q 039216 375 LASQCQECNENGLIICPYCC 394 (394)
Q Consensus 375 ~~lRC~~CNENGLirCp~C~ 394 (394)
+.++|+.|.--|+++|..|.
T Consensus 244 G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 244 GIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred CcccCCcccCCCCccccccc
Confidence 57777778778888887773
No 108
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=92.75 E-value=0.48 Score=40.02 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=42.1
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEec
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLES-----FKVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGG 320 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes-----~gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGG 320 (394)
+.||||+.+= .|+.|+.+...|+. .++.|..+|++....+. +..+ -.++|.+ |-+|+.++-
T Consensus 23 ~~vvV~f~a~-----~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~----~~~~-v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 23 ERVVCHFYHP-----EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLV----EKLN-IKVLPTVILFKNGKTVDR 90 (113)
T ss_pred CcEEEEEECC-----CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHH----HHCC-CccCCEEEEEECCEEEEE
Confidence 4455555441 59999999888865 25889999999887544 3343 6678864 668876543
No 109
>PTZ00051 thioredoxin; Provisional
Probab=92.58 E-value=0.67 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=38.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEe
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES-----FKVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIG 319 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes-----~gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIG 319 (394)
++.|+++ .|+.|+.+...|.. .++.|..+|++....+ .+.++ -..+|.+ |-+|+.++
T Consensus 22 li~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 22 IVDFYAE------WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEV----AEKEN-ITSMPTFKVFKNGSVVD 85 (98)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHH----HHHCC-CceeeEEEEEeCCeEEE
Confidence 4455555 59999999888876 3688888998866543 33343 5678864 45775543
No 110
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=92.44 E-value=0.1 Score=40.77 Aligned_cols=45 Identities=36% Similarity=0.878 Sum_probs=27.5
Q ss_pred CCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCcccc----CCCC
Q 039216 349 CDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLII----CPYC 393 (394)
Q Consensus 349 C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLir----Cp~C 393 (394)
|..|.|.+. ..|+.|+|+-.++... . ....|+.|+=.|.+. |+.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 455555544 6888888887766432 1 377888888888774 7777
No 111
>PRK14285 chaperone protein DnaJ; Provisional
Probab=92.30 E-value=0.12 Score=52.36 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=26.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|.+ +|+--+.|...-.+|.-++.+++|+.-|
T Consensus 33 PD~~~~---~~~a~~~f~~i~~Ay~vL~d~~kr~~yd 66 (365)
T PRK14285 33 PDKNKG---NKEAESIFKEATEAYEVLIDDNKRAQYD 66 (365)
T ss_pred CCCCCC---CHHHHHHHHHHHHHHHHHcCcchhHHHH
Confidence 998865 4777778988888998888887776544
No 112
>PRK14284 chaperone protein DnaJ; Provisional
Probab=92.23 E-value=0.11 Score=53.05 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|.+ ++..-..|.....+|.-++..++|+.-|
T Consensus 30 HPD~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 64 (391)
T PRK14284 30 HPDKNPG---DAEAEKRFKEVSEAYEVLSDAQKRESYD 64 (391)
T ss_pred CcCCCCC---chHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4999875 5777888998889999898887776544
No 113
>PHA02278 thioredoxin-like protein
Probab=92.16 E-value=0.63 Score=39.20 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=41.4
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYI 318 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyI 318 (394)
.+.||||+.+- .|+.|+.+..+|+.. .+.+..+|++.+.-...++.+..+ -.++|.+ |-+|+.+
T Consensus 14 ~~~vvV~F~A~-----WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 14 KKDVIVMITQD-----NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPVLIGYKDGQLV 85 (103)
T ss_pred CCcEEEEEECC-----CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccEEEEEECCEEE
Confidence 34555555542 599999998877543 356888999876322334555553 6788865 5688754
No 114
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.14 E-value=0.83 Score=35.43 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=38.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE--CCEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES----F--KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI--KGRYI 318 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes----~--gV~yeErDVSmD~e~reELkellGg~~tVPqVFI--dGkyI 318 (394)
.|+||+.+- .|+.|..+...|+. + ++.|..+|++.+..+.+. +| -..+|.+++ +|+.+
T Consensus 16 ~vvi~f~~~-----~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~-v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWAP-----WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAK----YG-IRSIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEECC-----CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----cC-CCcCCEEEEEeCCcEe
Confidence 455555442 59999998777654 2 478899999888754433 44 678998755 66543
No 115
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=92.02 E-value=0.73 Score=38.32 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=42.6
Q ss_pred cEE-EEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEecch
Q 039216 251 SVI-FYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGGAA 322 (394)
Q Consensus 251 kVV-LYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGGaD 322 (394)
.|| .|+++ .|+.|+.+...|+.. ++.|..+|++.+ ++.+..+ -.++|.+ |-+|+.++...
T Consensus 26 ~vvv~F~a~------~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~-i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 26 RVVVHFYEP------GFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD-IKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEEEeCC------CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC-CCcCCEEEEEECCEEEEEEe
Confidence 444 45556 599999998888642 577888888755 4555553 6688965 77998776554
Q ss_pred hHH
Q 039216 323 EVL 325 (394)
Q Consensus 323 EL~ 325 (394)
-..
T Consensus 94 G~~ 96 (113)
T cd02957 94 GFE 96 (113)
T ss_pred cHH
Confidence 443
No 116
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=91.60 E-value=0.92 Score=39.58 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=41.2
Q ss_pred CcEEE-EEecCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEe
Q 039216 250 ESVIF-YTTTLRGIRKTFEDCSSVRFLLESF-----K-VIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIG 319 (394)
Q Consensus 250 ~kVVL-YTTSLrgIRkTCpdCkrVR~ILes~-----g-V~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIG 319 (394)
+.||| |+.+ .|+.|+.+.-+|+.. + +.|..+|++.++++. +..| -.++|.+ |-+|+.++
T Consensus 15 ~~vVV~F~A~------WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la----~~~~-V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 15 KVVVIRFGRD------WDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFN----KMYE-LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred CEEEEEEECC------CChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH----HHcC-CCCCCEEEEEECCEEEE
Confidence 33444 6666 499999998887543 2 578999999987544 4443 6779975 67888664
No 117
>PRK15113 glutathione S-transferase; Provisional
Probab=91.53 E-value=0.99 Score=41.26 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=53.3
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
..++||.+... ++++|.+|+-+|..+||.|+.+.++.. .....++.++.. ...||.+.++|..|--...+...
T Consensus 4 ~~~~Ly~~~~~----~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 4 PAITLYSDAHF----FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSL-TRRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred CeEEEEeCCCC----CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCC-CCCCCEEEECCEEEecHHHHHHH
Confidence 34789986521 489999999999999999998887653 223456766653 57999999998777655555443
No 118
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=91.50 E-value=0.39 Score=43.04 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEcCCC---HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 265 TFEDCSSVRFLLESFKVIFFERDVSMH---IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~yeErDVSmD---~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
+++.+.+|+-+|..+||.|+.+.++.. .....++.++.. ..++|.+..+|..|-....|....
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNP-QGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCC-CCcCCEEEECCEEeecHHHHHHHH
Confidence 578999999999999999999888742 112345666543 679999999998887776665543
No 119
>PRK14288 chaperone protein DnaJ; Provisional
Probab=91.35 E-value=0.17 Score=51.53 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|.. ||+--+.|...-.+|.-++.+++|+.-|
T Consensus 32 HPD~~~~---~~~a~~~f~~i~~AYevLsd~~kR~~YD 66 (369)
T PRK14288 32 HPDRNAG---DKEAEEKFKLINEAYGVLSDEKKRALYD 66 (369)
T ss_pred CCCCCCC---ccHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3999865 6777778988888899888888876554
No 120
>PRK14287 chaperone protein DnaJ; Provisional
Probab=91.26 E-value=0.15 Score=51.91 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=26.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|. +|+.-+.|...-.+|.-++.+++|+.-|
T Consensus 33 HpD~~~----~~~~~~~f~~i~~Ay~~L~d~~kR~~YD 66 (371)
T PRK14287 33 HPDVNK----APDAEDKFKEVKEAYDTLSDPQKKAHYD 66 (371)
T ss_pred CcCCCC----ChhHHHHHHHHHHHHHHhCcHhHHHHHH
Confidence 389875 4677778988888999998888876555
No 121
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.21 E-value=0.9 Score=35.45 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=40.8
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEe
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLES----F--KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIG 319 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes----~--gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIG 319 (394)
..||||..+- .|+.|+.++..|.. + +|.|..+|.+.+..+ .+.++ -..+|.+ |-+|+.+.
T Consensus 18 ~~vvv~f~~~-----~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 18 KPVVVYFYAP-----WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKEL----CKKYG-VKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SEEEEEEEST-----TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHH----HHHTT-CSSSSEEEEEETTEEEE
T ss_pred CCEEEEEeCC-----CCCccccccceecccccccccccccchhhhhccchh----hhccC-CCCCCEEEEEECCcEEE
Confidence 4455555542 69999999987743 3 588999999888543 44443 6789976 45776543
No 122
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=91.17 E-value=1.3 Score=34.76 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh------CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcE--EEECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES------FKVIFFERDVSMHIEFREELWKVLDCKAVPPR--LFIKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes------~gV~yeErDVSmD~e~reELkellGg~~tVPq--VFIdGkyI 318 (394)
||.|+++ .|..|+.+...|+. ..+.+..+|++...++ ...++ -..+|. +|.+|+.+
T Consensus 18 ~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFE-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcC-CccccEEEEEECCEEE
Confidence 4555555 59999999888865 2577788888766543 33343 567895 46677643
No 123
>PRK14295 chaperone protein DnaJ; Provisional
Probab=91.10 E-value=0.15 Score=52.18 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=27.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|.+ ++..-..|...-.+|.-++.+++|+.-|
T Consensus 38 HPD~~~~---~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 72 (389)
T PRK14295 38 HPDANKG---DAKAEERFKEISEAYDVLSDEKKRKEYD 72 (389)
T ss_pred CCCcCCC---chhHHHHHHHHHHHHHHHCchhhHHHHH
Confidence 4999865 5677788888888888888888776555
No 124
>PRK14282 chaperone protein DnaJ; Provisional
Probab=91.09 E-value=0.16 Score=51.60 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=26.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|+.. +++.-..|...-.+|.-++..++|+.-|
T Consensus 33 HPD~~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 68 (369)
T PRK14282 33 HPDRHPEN--RKEAEQKFKEIQEAYEVLSDPQKRAMYD 68 (369)
T ss_pred CCCCCccc--hhHHHHHHHHHHHHHHHhcChhhHHHHh
Confidence 49998653 3555667888888888888888876555
No 125
>PRK14301 chaperone protein DnaJ; Provisional
Probab=91.08 E-value=0.16 Score=51.76 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=27.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|.+ +++.-+.|.....+|.-++..++|+.-|
T Consensus 34 PD~~~~---~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 67 (373)
T PRK14301 34 PDRNPD---NPEAEQKFKEAAEAYEVLRDAEKRARYD 67 (373)
T ss_pred CCcCCC---ChHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 998865 4777778999999999999888776555
No 126
>PRK14298 chaperone protein DnaJ; Provisional
Probab=91.05 E-value=0.16 Score=51.83 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=26.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|. ++..-+.|...-.+|.-++..++|+.-|
T Consensus 34 HPD~~~----~~~~~~~f~~i~~Ay~vL~d~~kR~~YD 67 (377)
T PRK14298 34 HPDKNK----EPDAEEKFKEISEAYAVLSDAEKRAQYD 67 (377)
T ss_pred CccccC----ChhHHHHHHHHHHHHHHhcchHhhhhhh
Confidence 499985 4777788888888899888888876555
No 127
>PRK14286 chaperone protein DnaJ; Provisional
Probab=91.03 E-value=0.16 Score=51.75 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=28.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|.. +|+..+.|...-.+|.-++..++|+.-|
T Consensus 34 PD~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 67 (372)
T PRK14286 34 PDKNKG---NKESEEKFKEATEAYEILRDPKKRQAYD 67 (372)
T ss_pred cCCCCC---chHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999865 6788899999999999999888876555
No 128
>PRK14294 chaperone protein DnaJ; Provisional
Probab=91.01 E-value=0.17 Score=51.21 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=28.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|.+ +|..-+.|+..-.+|.-++..++|+.-|
T Consensus 33 HPD~~~~---~~~~~~~f~~~~~Ay~vL~d~~~r~~yD 67 (366)
T PRK14294 33 HPDRNPG---DKEAEELFKEAAEAYEVLSDPKKRGIYD 67 (366)
T ss_pred CCCCCCC---chHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3999875 5777788998889999999888877555
No 129
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=1.1 Score=43.79 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=55.2
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHH
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHE 329 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~E 329 (394)
+.|.||.+- .||+.+|++-.|+.+||+|+.+.++... --+.|.+...-...+|.+..||+.|+-.-.+.+..+
T Consensus 8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 679999887 7999999999999999998888776542 112344433235689999999999876665555544
Q ss_pred c
Q 039216 330 Q 330 (394)
Q Consensus 330 s 330 (394)
+
T Consensus 81 e 81 (231)
T KOG0406|consen 81 E 81 (231)
T ss_pred h
Confidence 4
No 130
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=90.73 E-value=1.2 Score=36.03 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=35.7
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHh-------C--CCcEEEEEcCCCHH----------------HHHHHHHHhCC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLES-------F--KVIFFERDVSMHIE----------------FREELWKVLDC 304 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes-------~--gV~yeErDVSmD~e----------------~reELkellGg 304 (394)
..|++|++. .|++|+++..-|.. . ++.+..+++..+.. ...+|...+|
T Consensus 7 ~~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 79 (112)
T PF13098_consen 7 PIVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG- 79 (112)
T ss_dssp EEEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred EEEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC-
Confidence 345555555 69999988666652 1 34556666654431 1245666665
Q ss_pred CCCCcEE-EEC--CE---EEecchh
Q 039216 305 KAVPPRL-FIK--GR---YIGGAAE 323 (394)
Q Consensus 305 ~~tVPqV-FId--Gk---yIGGaDE 323 (394)
-..+|.+ |++ |+ .+-|+-.
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--
T ss_pred CCccCEEEEEcCCCCEEEEecCCCC
Confidence 6778875 565 66 4556543
No 131
>PRK14289 chaperone protein DnaJ; Provisional
Probab=90.71 E-value=0.18 Score=51.41 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=27.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|.. +|+.-+.|...-.+|.-++.+++|+.-|
T Consensus 34 HpD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~yD 68 (386)
T PRK14289 34 HPDKNPG---DKEAEEKFKEAAEAYDVLSDPDKRSRYD 68 (386)
T ss_pred CCCCCCC---ChHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4999875 5788888998888888888887765433
No 132
>PRK14291 chaperone protein DnaJ; Provisional
Probab=90.64 E-value=0.21 Score=50.94 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|.. |+.-+.|...-.+|.-++..++|+.-|
T Consensus 32 HPD~~~~----~~~~~~f~~i~~Ay~vLsd~~kR~~YD 65 (382)
T PRK14291 32 HPDFNKN----PEAEEKFKEINEAYQVLSDPEKRKLYD 65 (382)
T ss_pred CCCCCCC----ccHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 3999863 778888998889998888888776444
No 133
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=90.49 E-value=1.6 Score=41.66 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC---CCcEEEE
Q 039216 246 PGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF---KVIFFER 286 (394)
Q Consensus 246 pgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~---gV~yeEr 286 (394)
+.+...|++||-. .||||+++...|..+ +|.+..+
T Consensus 105 ~~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 105 PQEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455667777777 899999998888775 4665544
No 134
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=90.40 E-value=0.19 Score=50.42 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|. +|+..+.|...-.+|.-++...+|+.-|
T Consensus 29 HPD~~~----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd 62 (354)
T TIGR02349 29 HPDRNK----DKEAEEKFKEINEAYEVLSDPEKRAQYD 62 (354)
T ss_pred CCCCCC----CccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence 589886 6777888998889999888887776544
No 135
>PRK09381 trxA thioredoxin; Provisional
Probab=90.37 E-value=1.8 Score=35.18 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=39.1
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE--ECCEEEe
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES----F--KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF--IKGRYIG 319 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes----~--gV~yeErDVSmD~e~reELkellGg~~tVPqVF--IdGkyIG 319 (394)
-||.|+++ .|+.|..+...|+. + ++.+..+|++.+..+. ..++ -.++|.++ -+|+.++
T Consensus 24 vvv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~-v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 24 ILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYG-IRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH----HhCC-CCcCCEEEEEeCCeEEE
Confidence 34455555 59999998877753 2 4668888888776543 3343 67899774 4887664
No 136
>PRK14290 chaperone protein DnaJ; Provisional
Probab=90.26 E-value=0.23 Score=50.37 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=25.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||+|++. .+...+.|...-.+|.-++.+++|+.-|
T Consensus 32 HPD~~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (365)
T PRK14290 32 HPDLHPGN--KAEAEEKFKEISEAYEVLSDPQKRRQYD 67 (365)
T ss_pred CcCCCCCc--hhHHHHHHHHHHHHHHHhcChhhhhhhc
Confidence 48987642 1256678888888888888887776444
No 137
>PRK14279 chaperone protein DnaJ; Provisional
Probab=90.08 E-value=0.21 Score=51.29 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=29.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARIDQ 187 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~~ 187 (394)
.||.|.+ ||+--+.|.....+|.-++.+++|+.-|.
T Consensus 38 HPD~~~~---~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 38 HPDANPG---DPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred CcCCCCC---ChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 3999865 68888899999999999999988876553
No 138
>PLN02378 glutathione S-transferase DHAR1
Probab=90.02 E-value=0.94 Score=41.68 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 264 KTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 264 kTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
.+|++|.+|+-+|+.+|+.|+.+.|+.... ..++.++.. ..++|.+-.+|..|.-...+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP-~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISP-QGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHH
Confidence 579999999999999999998877765421 235666553 67999998888777665555444
No 139
>PRK14280 chaperone protein DnaJ; Provisional
Probab=89.92 E-value=0.23 Score=50.56 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=26.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|. +|..-+.|...-.+|.-++..++|+.-|
T Consensus 33 HpD~~~----~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 66 (376)
T PRK14280 33 HPDINK----EEGADEKFKEISEAYEVLSDDQKRAQYD 66 (376)
T ss_pred CcCCCC----CccHHHHHHHHHHHHHHhccHhHHHHHH
Confidence 388875 3667778988888999999888776555
No 140
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=89.77 E-value=2.6 Score=33.15 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=45.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHH--HhCCCCCCcEEEECCEEEecchhHHh
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWK--VLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELke--llGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
+++|... ..+.|.+++-+|+..|+.|+.+.++....+.+ +.. .. ...++|.+.++|..|.-.-.+..
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~-~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFN------GRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSL-MFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeC------CCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCC-CCCCCCEEEECCEEEeeHHHHHH
Confidence 4677777 34688899999999999999888765443321 111 01 13589999999977766555543
No 141
>PLN02473 glutathione S-transferase
Probab=89.76 E-value=1.3 Score=40.13 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=51.1
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
+.||... ++++|.+|+-+|..+||.|+.+.++.. .....++..+. -..++|.+..+|..|.....+...
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n-P~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ-PFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC-CCCCCCeEEECCEEEEehHHHHHH
Confidence 5688766 578999999999999999988766533 22334454543 256999999999888877777654
No 142
>PRK14292 chaperone protein DnaJ; Provisional
Probab=89.46 E-value=0.26 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|. ++.--+.|...-.+|.-++..++|+.-|
T Consensus 32 pD~~~----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd 64 (371)
T PRK14292 32 PDRNK----EKGAAEKFAQINEAYAVLSDAEKRAHYD 64 (371)
T ss_pred CCCCC----ChhHHHHHHHHHHHHHHhcchhhhhhHh
Confidence 88875 4667777877777888888777665444
No 143
>PRK14293 chaperone protein DnaJ; Provisional
Probab=89.44 E-value=0.24 Score=50.37 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=26.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|+ ++..-+.|...-.+|.-++.+.+|+.-|
T Consensus 32 HPD~~~----~~~a~~~f~~i~~Ay~vL~~~~~R~~yd 65 (374)
T PRK14293 32 HPDVNK----EPGAEDRFKEINRAYEVLSDPETRARYD 65 (374)
T ss_pred CCCCCC----CcCHHHHHHHHHHHHHHHhchHHHHHHh
Confidence 388876 4667788988888999888888776544
No 144
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.24 Score=50.59 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=37.3
Q ss_pred CCCCCCCCcce-----eeCCCCCCcceeeeC-C-------CccccCcccccCccc-----cCCCCC
Q 039216 347 GPCDGCAGVRF-----VLCFRCCGSHKVVTG-D-------GLASQCQECNENGLI-----ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf-----VpC~~C~GS~K~~~~-~-------~~~lRC~~CNENGLi-----rCp~C~ 394 (394)
..|..|-|.++ .+|+.|+|+.-.... . .-.++|..||..|-+ +|+.|.
T Consensus 128 ~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 128 FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccc
Confidence 47888888876 369999999554421 1 138999999999999 999994
No 145
>PRK14296 chaperone protein DnaJ; Provisional
Probab=89.21 E-value=0.28 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=28.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARIDQ 187 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~~ 187 (394)
||.|. +|+--+.|...-.+|.-++.+++|+.-|.
T Consensus 34 PD~n~----~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 34 PDLNK----SPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred cCCCC----CchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 99984 57778899999999999999988876653
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.09 E-value=1.2 Score=41.37 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCCcEEEEEe---cCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE--CCEE
Q 039216 248 GDESVIFYTT---TLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI--KGRY 317 (394)
Q Consensus 248 ge~kVVLYTT---SLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqVFI--dGky 317 (394)
+.-.|++|++ +| |+.|+.+..+|+.. ++.+..++++.+. -.++.+.+| -.++|.+.+ +|+.
T Consensus 19 ~~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~-V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYG-VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcC-CCccCEEEEEeCCee
Confidence 3345888988 65 99999999998654 3556677777442 124444454 678898654 6544
Q ss_pred E
Q 039216 318 I 318 (394)
Q Consensus 318 I 318 (394)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 3
No 147
>PRK14278 chaperone protein DnaJ; Provisional
Probab=89.08 E-value=0.31 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|. ||..-+.|...-.+|.-++..++|+.-|
T Consensus 33 pD~~~----~~~a~~~f~~i~~Ay~vL~d~~~r~~YD 65 (378)
T PRK14278 33 PDVNP----DEEAQEKFKEISVAYEVLSDPEKRRIVD 65 (378)
T ss_pred CCCCC----cHHHHHHHHHHHHHHHHhchhhhhhhhh
Confidence 99986 5787888999889999998888876444
No 148
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=89.06 E-value=1.1 Score=43.53 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 265 TFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.||+|.+++-+|+.+||.|+.+.|+... ...++.++.. ...+|.+..+|..|.....|....
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP-~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISP-EGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence 6999999999999999999987776542 1234555543 569999999998887666665543
No 149
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=89.02 E-value=1.6 Score=33.19 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=34.9
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHh----C----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE-ECC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLES----F----KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF-IKG 315 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes----~----gV~yeErDVSmD~e~reELkellGg~~tVPqVF-IdG 315 (394)
.-+|+|+++ .|+.|..+...|.. . ++.+..+|.+.+..+ .+.+| -..+|.++ +++
T Consensus 17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-i~~~Pt~~~~~~ 80 (101)
T cd02961 17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDL----CSEYG-VRGYPTIKLFPN 80 (101)
T ss_pred cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHH----HHhCC-CCCCCEEEEEcC
Confidence 445566666 59999998887743 3 455677777665443 34444 67889764 443
No 150
>PRK14297 chaperone protein DnaJ; Provisional
Probab=88.92 E-value=0.27 Score=50.07 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=26.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|.+ +|...+.|...-.+|.-++..++|+.-|
T Consensus 33 HPD~~~~---~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 67 (380)
T PRK14297 33 HPDKNKG---NKEAEEKFKEINEAYQVLSDPQKKAQYD 67 (380)
T ss_pred CcCCCCC---cHHHHHHHHHHHHHHHHhcCHhhhCchh
Confidence 4888865 4777778888888888888877776444
No 151
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=88.91 E-value=3.4 Score=33.87 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEE
Q 039216 265 TFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYI 318 (394)
Q Consensus 265 TCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyI 318 (394)
.|+.|+.+...|+.. ++.|..+|++.+... .++.+..+ -..+|.+ |-+|+.+
T Consensus 26 wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~-V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 26 HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREK-IIEVPHFLFYKDGEKI 84 (103)
T ss_pred CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcC-CCcCCEEEEEeCCeEE
Confidence 599999888877653 577888888776432 34545454 6778964 4478643
No 152
>PRK14276 chaperone protein DnaJ; Provisional
Probab=88.87 E-value=0.29 Score=49.89 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=26.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|. +|..-+.|...-.+|.-++..++|+.-|
T Consensus 33 HpD~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 66 (380)
T PRK14276 33 HPDINK----EPGAEEKYKEVQEAYETLSDPQKRAAYD 66 (380)
T ss_pred CcCCCC----CcCHHHHHHHHHHHHHHhcCHhhhhhHh
Confidence 399885 4667778888888888888888876555
No 153
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=88.49 E-value=1.9 Score=33.96 Aligned_cols=56 Identities=11% Similarity=0.193 Sum_probs=36.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE--ECCEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF--IKGRYI 318 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqVF--IdGkyI 318 (394)
||.|.++ .|+.|+.+...|... .+.+..+|++.+..+ ...++ -..+|.++ -+|+.+
T Consensus 16 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~-i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQI----AQQFG-VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHH----HHHcC-CCCCCEEEEEeCCEEe
Confidence 4445555 599999997777542 355778888877654 33443 67899764 566543
No 154
>PRK14296 chaperone protein DnaJ; Provisional
Probab=88.28 E-value=0.49 Score=48.30 Aligned_cols=48 Identities=31% Similarity=0.767 Sum_probs=31.6
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC--C-----ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD--G-----LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~--~-----~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|+.|+|+-.++..- + ....|+.|+--|-+ +|+.|.
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 46888887764 4688888886655321 1 23578888877754 477773
No 155
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=88.22 E-value=2.5 Score=36.86 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEec
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----K-VIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGG 320 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----g-V~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGG 320 (394)
...||.|+.+|. .||.|..+.-+|... + +.|..+|+..+++ +....+ -.++|.+ |-+|+.++.
T Consensus 28 ~~~v~~f~~~~~----~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f~-V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 28 GDLVLLLAGDPV----RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARFG-VLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCEEEEecCCcc----cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHcC-CCcCCEEEEEECCEEEEE
Confidence 344555655541 399999999888643 2 5577888888874 444443 6788964 679987764
Q ss_pred c
Q 039216 321 A 321 (394)
Q Consensus 321 a 321 (394)
.
T Consensus 99 ~ 99 (111)
T cd02965 99 L 99 (111)
T ss_pred E
Confidence 4
No 156
>PRK10996 thioredoxin 2; Provisional
Probab=88.02 E-value=2.7 Score=36.64 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=38.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYI 318 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyI 318 (394)
-||.|+++ .|+.|+.+...|... ++.|..+|++.+..+ .+.++ -.++|.+ |-+|+.+
T Consensus 55 vvv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~-V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARFR-IRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhcC-CCccCEEEEEECCEEE
Confidence 35555555 599999887776542 466788888877654 33443 6788875 4578754
No 157
>PRK14285 chaperone protein DnaJ; Provisional
Probab=87.96 E-value=0.53 Score=47.85 Aligned_cols=48 Identities=35% Similarity=0.858 Sum_probs=32.5
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred ccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 46777777763 46888888876654333 25678888888854 577773
No 158
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.90 E-value=3.8 Score=37.31 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHH--hCCCcEEEEEcC
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLE--SFKVIFFERDVS 289 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILe--s~gV~yeErDVS 289 (394)
+...|++|+-. .||+|+++...|. ..+|.+..+-+.
T Consensus 77 ~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 77 GKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred CCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEcC
Confidence 45567777666 7999999999997 456776666553
No 159
>PRK14277 chaperone protein DnaJ; Provisional
Probab=87.83 E-value=0.35 Score=49.41 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=26.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|.+ +|+.-+.|...-.+|.-++..++|+.-|
T Consensus 35 PD~~~~---~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 68 (386)
T PRK14277 35 PDLNPG---DKEAEQKFKEINEAYEILSDPQKRAQYD 68 (386)
T ss_pred CCcCCC---chHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 898864 4666778998889999999888876555
No 160
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=87.66 E-value=1.3 Score=37.01 Aligned_cols=58 Identities=10% Similarity=0.211 Sum_probs=34.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHH---------hCCCcEEEEEcCCCHHH---------HHHHHHHhCCCCCCcE-E
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLE---------SFKVIFFERDVSMHIEF---------REELWKVLDCKAVPPR-L 311 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILe---------s~gV~yeErDVSmD~e~---------reELkellGg~~tVPq-V 311 (394)
-+|.|+++ .|++|+++...|. ..++.+..+|++.+... ..++....+ ...+|. +
T Consensus 17 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~ 89 (125)
T cd02951 17 LLLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR-VRFTPTVI 89 (125)
T ss_pred EEEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-CccccEEE
Confidence 34555555 5999998875431 12466677777654211 245555554 678897 4
Q ss_pred EECC
Q 039216 312 FIKG 315 (394)
Q Consensus 312 FIdG 315 (394)
|+++
T Consensus 90 ~~~~ 93 (125)
T cd02951 90 FLDP 93 (125)
T ss_pred EEcC
Confidence 6664
No 161
>PRK14280 chaperone protein DnaJ; Provisional
Probab=87.42 E-value=0.62 Score=47.51 Aligned_cols=48 Identities=33% Similarity=0.734 Sum_probs=30.9
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC-------ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG-------LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~-------~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|..|+|+-.++.... ....|+.|+-.|-+ +|+.|.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 144 ETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 46777777663 56888888765543221 24578888877754 577773
No 162
>PRK14283 chaperone protein DnaJ; Provisional
Probab=87.19 E-value=0.43 Score=48.62 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=27.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
.||.|. +|+-.+.|.+.-.+|.-++..++|+.-|
T Consensus 34 HPD~~~----~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD 67 (378)
T PRK14283 34 HPDVSE----EEGAEEKFKEISEAYAVLSDDEKRQRYD 67 (378)
T ss_pred CcCCCC----CccHHHHHHHHHHHHHHhchhHHHHHHh
Confidence 499885 3778889999999999999988876555
No 163
>PRK14282 chaperone protein DnaJ; Provisional
Probab=87.15 E-value=0.7 Score=46.95 Aligned_cols=48 Identities=29% Similarity=0.784 Sum_probs=32.7
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|+.|+|+-.++..- + ....|+.|+-.|.+ +|+.|.
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 46788877653 5788888887665321 1 25688888888854 577773
No 164
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=87.11 E-value=1.5 Score=34.19 Aligned_cols=54 Identities=7% Similarity=0.138 Sum_probs=35.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHh-------C-CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLES-------F-KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes-------~-gV~yeErDVSmD~e~reELkellGg~~tVPqVF 312 (394)
+..-||+|+++ .|+.|+.+...|.. . ++.+..+|...+..+. +.+| -..+|.+|
T Consensus 13 ~~~~~i~f~~~------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~-i~~~P~~~ 74 (102)
T TIGR01126 13 NKDVLVEFYAP------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLA----SRFG-VSGFPTIK 74 (102)
T ss_pred CCcEEEEEECC------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHH----HhCC-CCcCCEEE
Confidence 33457777777 59999987665543 1 3678888887775443 3344 67899874
No 165
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=87.04 E-value=0.44 Score=49.69 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
-||.|. |+ +.|.+.-.+|.-++.+++|+.-|
T Consensus 57 HPDk~~----~~---e~F~~i~~AYevLsD~~kR~~YD 87 (421)
T PTZ00037 57 HPDKGG----DP---EKFKEISRAYEVLSDPEKRKIYD 87 (421)
T ss_pred CCCCCc----hH---HHHHHHHHHHHHhccHHHHHHHh
Confidence 389874 23 78999999999999888876555
No 166
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=86.88 E-value=2.2 Score=34.17 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=36.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
-+|.|+++ .|+.|+.+...+... .+.+..+|++.+..+ .+..+ -..+|.+ |-+|+
T Consensus 21 ~~v~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSP------RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQG-VNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECC------CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHcC-CCccCEEEEEcCCC
Confidence 35566666 599999988877532 356778888877643 33343 5688977 44664
No 167
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=86.84 E-value=2.2 Score=34.76 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
-+|.|.++ .|+.|+++...|+.. .+.|-.+|...+.. +....| -.++|.+ |-+|+
T Consensus 21 vlv~F~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~-v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYAD------WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYR-INKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECC------CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCC-CCcCCEEEEEeCCc
Confidence 35566666 499999998777521 36778888887754 444454 7789976 44554
No 168
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=86.72 E-value=2.4 Score=33.76 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=36.2
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES-------FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes-------~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
.+|.|+++| |+.|+.+..+|+. .+|.+..+|++.+..+ ...++ -.++|.+++
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~~-i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL----SGRFF-VTALPTIYH 77 (101)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH----HHHcC-CcccCEEEE
Confidence 467777774 9999998877653 2577788888877654 33343 678898754
No 169
>PRK14284 chaperone protein DnaJ; Provisional
Probab=86.71 E-value=0.63 Score=47.72 Aligned_cols=49 Identities=41% Similarity=0.886 Sum_probs=32.2
Q ss_pred CCCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCCC
Q 039216 346 DGPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
...|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 346777777654 46888888866553322 24678888888754 577773
No 170
>PRK14279 chaperone protein DnaJ; Provisional
Probab=86.67 E-value=0.68 Score=47.61 Aligned_cols=47 Identities=32% Similarity=0.842 Sum_probs=27.8
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+-.|.+ +|+.|
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCC
Confidence 45777776664 45777777765543332 24567777666643 46665
No 171
>PRK14301 chaperone protein DnaJ; Provisional
Probab=86.58 E-value=0.51 Score=48.14 Aligned_cols=47 Identities=36% Similarity=0.847 Sum_probs=27.9
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.+....+ ....|+.|+-.|-+ +|+.|
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCC
Confidence 35777766653 45777777755543322 24567777766643 56666
No 172
>PRK14276 chaperone protein DnaJ; Provisional
Probab=86.54 E-value=0.69 Score=47.26 Aligned_cols=48 Identities=29% Similarity=0.722 Sum_probs=30.9
Q ss_pred CCCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 346 DGPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 346 ~~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
...|..|.|.+. ..|+.|+|+-.+...- + ....|+.|+-.|-+ +|+.|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 209 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTC 209 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCC
Confidence 346888877764 5688888886554321 1 24578888777744 57777
No 173
>PRK14281 chaperone protein DnaJ; Provisional
Probab=86.42 E-value=0.47 Score=48.74 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=26.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 039216 150 PDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARID 186 (394)
Q Consensus 150 pd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~ 186 (394)
||.|.+ +++..+.|...-.+|..++..++|+.-|
T Consensus 33 PD~~~~---~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 66 (397)
T PRK14281 33 PDKNPD---NKEAEEHFKEVNEAYEVLSNDDKRRRYD 66 (397)
T ss_pred CCcCCC---chHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 998865 4677788988888899998888876444
No 174
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=86.36 E-value=2.3 Score=33.39 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh--------CCCcEEEEEcCC-CHHHHHHHHHHhCCCCCCcEEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES--------FKVIFFERDVSM-HIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes--------~gV~yeErDVSm-D~e~reELkellGg~~tVPqVFI 313 (394)
-||.|+++ .|+.|+.+..++.. .++.+..+|.+. +..+.+. ++ -.++|.+++
T Consensus 21 ~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~~-i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKK----YG-VSGFPTLKF 81 (105)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHh----CC-CCCcCEEEE
Confidence 35566666 59999987777643 236678888888 6554443 33 578897643
No 175
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=86.27 E-value=1.3 Score=37.70 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh------CCCcEEEEEcCCCH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES------FKVIFFERDVSMHI 292 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes------~gV~yeErDVSmD~ 292 (394)
+|.|+++ .|+.|+.+...+.. ....|..+|++.+.
T Consensus 23 lV~F~a~------WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~ 63 (117)
T cd02959 23 MLLIHKT------WCGACKALKPKFAESKEISELSHNFVMVNLEDDE 63 (117)
T ss_pred EEEEeCC------cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC
Confidence 4445666 49999999887766 34568888888764
No 176
>PRK14278 chaperone protein DnaJ; Provisional
Probab=86.16 E-value=0.76 Score=46.97 Aligned_cols=48 Identities=33% Similarity=0.685 Sum_probs=29.1
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|+.|+|+-.++... + ....|+.|+-.|-+ +|+.|.
T Consensus 140 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 140 VLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred ccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 46777777653 4677777776554221 1 24567777777743 577763
No 177
>PRK10767 chaperone protein DnaJ; Provisional
Probab=86.01 E-value=0.62 Score=47.27 Aligned_cols=49 Identities=31% Similarity=0.686 Sum_probs=34.1
Q ss_pred CCCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCCC
Q 039216 346 DGPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
...|..|.|.+. ..|..|+|+-+++...+ ....|+.|+-.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 346888887764 47888888876654433 24578888888865 688773
No 178
>PRK14286 chaperone protein DnaJ; Provisional
Probab=85.84 E-value=0.84 Score=46.55 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=28.9
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCcc---ccCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGL---IICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGL---irCp~C 393 (394)
..|..|.|.+. ..|..|+|+-.++...+ ....|+.|+--|. .+|+.|
T Consensus 151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCC
Confidence 46777777664 56777777765543322 2456777776664 356666
No 179
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=85.84 E-value=2.8 Score=33.56 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=36.3
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHH----hC--CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLE----SF--KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKG 315 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~--gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdG 315 (394)
.-||.|+++ .|+.|+.+...++ .+ ++.+-.+|.+.+..+ .+..| -..+|.+ |-+|
T Consensus 21 ~v~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAP------WCGPCQALLPELRKAARALKGKVKVGSVDCQKYESL----CQQAN-IRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHH----HHHcC-CCcccEEEEEcCC
Confidence 345556666 4999998877664 32 467888898876643 33343 6788975 4455
No 180
>PRK14297 chaperone protein DnaJ; Provisional
Probab=85.80 E-value=0.61 Score=47.58 Aligned_cols=48 Identities=25% Similarity=0.736 Sum_probs=31.4
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|+.|+|+-.++... + ...+|+.|+-.|.+ +|+.|.
T Consensus 149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 46777777664 4688888886554321 1 25678888877754 577773
No 181
>PRK14277 chaperone protein DnaJ; Provisional
Probab=85.73 E-value=0.62 Score=47.65 Aligned_cols=47 Identities=36% Similarity=0.762 Sum_probs=27.2
Q ss_pred CCCCCCCCcc------eeeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVR------FVLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~R------fVpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.+ +|+.|
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 218 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKC 218 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCC
Confidence 3566666654 35677777775544221 1 23567777777654 46666
No 182
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=85.70 E-value=0.75 Score=52.15 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=37.0
Q ss_pred EEEecchhHHhHHHcCCchhhhccCCC-----CCCCCCCCCCCCcce------------eeCCCCCCcce
Q 039216 316 RYIGGAAEVLTLHEQGKLRPLFDGIPI-----DRSDGPCDGCAGVRF------------VLCFRCCGSHK 368 (394)
Q Consensus 316 kyIGGaDEL~eL~EsGeL~kLLk~~~~-----~~~~~~C~~CGG~Rf------------VpC~~C~GS~K 368 (394)
.|.|-++++++|..+-...+ ..++.. .-..+.|++|+|.++ |||..|||.+.
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK-~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAK-ARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred chhcchHHHHHHHhcChHHH-HcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 47778899998876544333 333332 224689999999987 69999999764
No 183
>PRK14288 chaperone protein DnaJ; Provisional
Probab=85.58 E-value=0.7 Score=47.09 Aligned_cols=46 Identities=30% Similarity=0.790 Sum_probs=24.9
Q ss_pred CCCCCCCcce-----eeCCCCCCcceeeeCCC---ccccCcccccCcc---ccCCCC
Q 039216 348 PCDGCAGVRF-----VLCFRCCGSHKVVTGDG---LASQCQECNENGL---IICPYC 393 (394)
Q Consensus 348 ~C~~CGG~Rf-----VpC~~C~GS~K~~~~~~---~~lRC~~CNENGL---irCp~C 393 (394)
.|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+-.|. .+|+.|
T Consensus 142 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 142 VCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred cCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccC
Confidence 5666666553 35666666655543332 1345666666663 345555
No 184
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=85.56 E-value=3.4 Score=37.88 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=40.8
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEecc
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGGA 321 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGGa 321 (394)
..|||++.+- .|+.|+.+..+|..+ .+.|..+|++.. ++...++ -.++|.+ |.+|+.++..
T Consensus 84 ~~VVV~Fya~-----wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~-v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 84 TTVVVHIYEP-----GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD-TDALPALLVYKGGELIGNF 151 (175)
T ss_pred cEEEEEEECC-----CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC-CCCCCEEEEEECCEEEEEE
Confidence 3566655542 599999888777543 477888888753 4555554 6789964 6799876533
No 185
>PRK14298 chaperone protein DnaJ; Provisional
Probab=85.44 E-value=0.89 Score=46.52 Aligned_cols=47 Identities=32% Similarity=0.830 Sum_probs=31.7
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.++..- + ....|+.|+-.|-+ +|+.|
T Consensus 142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 204 (377)
T PRK14298 142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVC 204 (377)
T ss_pred ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCC
Confidence 46888887765 5788888886655321 1 25678888888743 67777
No 186
>PRK14300 chaperone protein DnaJ; Provisional
Probab=85.43 E-value=0.63 Score=47.39 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARIDQ 187 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~~ 187 (394)
.||.|. ++..-..|...-.+|.-++.+.+|+.-|.
T Consensus 32 HPD~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 32 HPDTTD----AKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CcCCCC----CcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 589875 35566788888889998988887765553
No 187
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=85.35 E-value=4.4 Score=33.04 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh----CC---CcEEEEEcCCCHHHHHHHHHHhCCCCCCcE--EEECCEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES----FK---VIFFERDVSMHIEFREELWKVLDCKAVPPR--LFIKGRY 317 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes----~g---V~yeErDVSmD~e~reELkellGg~~tVPq--VFIdGky 317 (394)
-||.|+++ .|+.|+.+...|.. ++ +.|..+|+. +.+ +.+..+ -..+|. +|-+|+.
T Consensus 20 vvv~F~a~------wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~-v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQE------WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYR-GKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECC------cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcC-CCcCcEEEEEECCEE
Confidence 34555556 49999988877753 32 557777777 432 334443 667885 4567763
No 188
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=0.93 Score=41.74 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=54.7
Q ss_pred CChhhhhhhcCCCCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCC
Q 039216 234 SNPLLNFELKCPPGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAV 307 (394)
Q Consensus 234 ~d~L~~f~~~cppgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~t 307 (394)
......|..+-......-||-|+..| |.-|+.+.-+|+.+ .+.+..+|++.+.++... ++ -..
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y~-I~a 115 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----YE-ISA 115 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----cc-eee
Confidence 34556777777777777788899997 99999999998754 466888999988754433 32 567
Q ss_pred CcEE--EECCEEE
Q 039216 308 PPRL--FIKGRYI 318 (394)
Q Consensus 308 VPqV--FIdGkyI 318 (394)
+|.| |-||+-+
T Consensus 116 vPtvlvfknGe~~ 128 (150)
T KOG0910|consen 116 VPTVLVFKNGEKV 128 (150)
T ss_pred eeEEEEEECCEEe
Confidence 8864 7788643
No 189
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=85.08 E-value=7.7 Score=30.62 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=45.9
Q ss_pred CCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 260 RGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 260 rgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.|+....++|-++..+|+-.++.|+....+ +.. .+....+|.|..+|+.|+++..+.+..
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~--------~sp~gkLP~l~~~~~~i~d~~~Ii~~L 69 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW--------RSPTGKLPALLTSGTKISGPEKIIEYL 69 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC--------CCCCCccCEEEECCEEecChHHHHHHH
Confidence 456667899999999999999999665433 320 111457999999999999999887654
No 190
>PRK14289 chaperone protein DnaJ; Provisional
Probab=84.99 E-value=0.94 Score=46.25 Aligned_cols=48 Identities=38% Similarity=0.756 Sum_probs=33.9
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+. ..|..|+|+-+++..- + ....|+.|+-.|-+ +|+.|.
T Consensus 155 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 155 VPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred cccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence 46888877664 5799999987665332 1 25688888888854 788873
No 191
>PRK14294 chaperone protein DnaJ; Provisional
Probab=84.88 E-value=0.71 Score=46.85 Aligned_cols=47 Identities=30% Similarity=0.812 Sum_probs=29.1
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+-.|-+ +|+.|
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 145 ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred ccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCC
Confidence 35777777654 46777777765543222 24577777777754 56666
No 192
>PRK14295 chaperone protein DnaJ; Provisional
Probab=84.82 E-value=1 Score=46.34 Aligned_cols=47 Identities=36% Similarity=0.954 Sum_probs=29.9
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCCC---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGDG---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|..|+|+-.++...+ ...+|+.|+-.|.+ +|+.|
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVC 225 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCC
Confidence 45777776654 56778887765553333 24577777777754 47766
No 193
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=84.79 E-value=3.2 Score=40.46 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHhCCCcE--EEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHHc
Q 039216 264 KTFEDCSSVRFLLESFKVIF--FERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 264 kTCpdCkrVR~ILes~gV~y--eErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~Es 330 (394)
-.|++|+++-..|..+++.| ..+|++.-+ ++++.+++ ...+|.|-.||..+-..+.+.+..++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp-~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISP-GGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCC-CCCCCeEEeCCceeccHHHHHHHHHH
Confidence 36999999999999999986 466666666 45667775 78999999999999888888766443
No 194
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=84.44 E-value=5 Score=31.63 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh------CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES------FKVIFFERDVSMHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes------~gV~yeErDVSmD~e~reELkellGg~~tVPqVF 312 (394)
+|+|.++ .|+.|..+...|.. ..+.+..+|+..+..+. +.+| -..+|.++
T Consensus 22 lv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~-i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLA----QQYG-VRGFPTIK 77 (103)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHH----HHCC-CCccCEEE
Confidence 4455555 59999998776644 24667888887776543 3443 67799763
No 195
>PRK14281 chaperone protein DnaJ; Provisional
Probab=84.22 E-value=0.88 Score=46.80 Aligned_cols=47 Identities=34% Similarity=0.821 Sum_probs=27.9
Q ss_pred CCCCCCCCcce-----eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF-----VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf-----VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|..|+|+-.+...- + ....|+.|+-.|.+ +|+.|
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 35666666554 4577777776554221 1 14567777777753 57666
No 196
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=84.19 E-value=0.12 Score=48.60 Aligned_cols=84 Identities=18% Similarity=0.414 Sum_probs=60.9
Q ss_pred CCcEEEECCEEEecchhHHhHHHcCCchhhhccCCCCC--CCCCCCCCCCcceeeCCCCCCcceeeeCC--CccccCccc
Q 039216 307 VPPRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDR--SDGPCDGCAGVRFVLCFRCCGSHKVVTGD--GLASQCQEC 382 (394)
Q Consensus 307 tVPqVFIdGkyIGGaDEL~eL~EsGeL~kLLk~~~~~~--~~~~C~~CGG~RfVpC~~C~GS~K~~~~~--~~~lRC~~C 382 (394)
..|.-+++.-++-...+|.++ .+|.|.+.|+.+-... .-..|..|.+.+| .|..|+.+ .+.... ....+|+.|
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~-~~IfPF~~~~~~~C~~C 178 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSD-DIIFPFQIDTTVRCPKC 178 (202)
T ss_pred cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCC-CCCCCCCCCCeeeCCcC
Confidence 556667777788888998888 5899999987754322 1238999999999 79999998 444333 368999988
Q ss_pred ccCc------cccCCCC
Q 039216 383 NENG------LIICPYC 393 (394)
Q Consensus 383 NENG------LirCp~C 393 (394)
+--= ...||.|
T Consensus 179 ~~v~H~~C~~~~~CpkC 195 (202)
T PF13901_consen 179 KSVFHKSCFRKKSCPKC 195 (202)
T ss_pred ccccchhhcCCCCCCCc
Confidence 7421 1567777
No 197
>PRK14290 chaperone protein DnaJ; Provisional
Probab=83.65 E-value=0.93 Score=46.03 Aligned_cols=47 Identities=28% Similarity=0.760 Sum_probs=30.0
Q ss_pred CCCCCCCCcce-----eeCCCCCCcceeeeCC--Cc-----cccCcccccCc---cccCCCC
Q 039216 347 GPCDGCAGVRF-----VLCFRCCGSHKVVTGD--GL-----ASQCQECNENG---LIICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf-----VpC~~C~GS~K~~~~~--~~-----~lRC~~CNENG---LirCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.+...- +. ..+|+.|+-.| ..+|+.|
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence 46777777664 4688888876554321 11 25788888777 4467777
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=83.59 E-value=3.3 Score=31.34 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=23.4
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSM 290 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSm 290 (394)
|++|+.. .||+|..+...|... ++.+..+.+..
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 4566666 699999998888763 56677666543
No 199
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=83.59 E-value=3.7 Score=33.77 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcC-CCHHHHHHHHHHhCCCCCCcEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVS-MHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVS-mD~e~reELkellGg~~tVPqVF 312 (394)
+..-||.|+++| |+.|+.+.-.|+.. ++.+..+|.+ .+.. +...++ -..+|.++
T Consensus 18 g~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~-V~~~PT~~ 77 (100)
T cd02999 18 EDYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYG-VVGFPTIL 77 (100)
T ss_pred CCEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcC-CeecCEEE
Confidence 344566677774 99999988777543 5667777876 4543 344443 67889753
No 200
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.58 E-value=0.89 Score=48.21 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=35.2
Q ss_pred CCCCCCCCCcceeeCCCCCCcceeeeCCCccccCcccccCc--cccCCCCC
Q 039216 346 DGPCDGCAGVRFVLCFRCCGSHKVVTGDGLASQCQECNENG--LIICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENG--LirCp~C~ 394 (394)
.-.|..||-. +.|+.|+++-..+ .+...++|..|+-.- -..||.|.
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h-~~~~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYH-KKEGKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEe-cCCCeEEcCCCcCcCCCCCCCCCCC
Confidence 3479999964 6899999985554 445689999998765 45799993
No 201
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=83.42 E-value=1.4 Score=44.39 Aligned_cols=47 Identities=30% Similarity=0.738 Sum_probs=29.6
Q ss_pred CCCCCCCCcc------eeeCCCCCCcceeeeCCC-------ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVR------FVLCFRCCGSHKVVTGDG-------LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~R------fVpC~~C~GS~K~~~~~~-------~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+ ...|..|+|+-.++...+ ....|+.|+-.|-+ +|+.|
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (354)
T TIGR02349 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTC 206 (354)
T ss_pred CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCC
Confidence 4677777766 456788888765543221 14577777777754 57776
No 202
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=83.28 E-value=1 Score=47.07 Aligned_cols=47 Identities=36% Similarity=0.659 Sum_probs=25.7
Q ss_pred CCCCCCCCcce-----eeCCCCCCcceeeeCC--C-----ccccCcccccCccc-----cCCCC
Q 039216 347 GPCDGCAGVRF-----VLCFRCCGSHKVVTGD--G-----LASQCQECNENGLI-----ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf-----VpC~~C~GS~K~~~~~--~-----~~lRC~~CNENGLi-----rCp~C 393 (394)
..|..|.|.+. ..|+.|+|+-.++... + ....|+.|+-.|-+ +|+.|
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C 214 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNC 214 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcC
Confidence 35666666553 4577777765432111 1 13467777766654 46666
No 203
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=82.83 E-value=1.6 Score=34.14 Aligned_cols=37 Identities=30% Similarity=0.814 Sum_probs=25.8
Q ss_pred CCCCCCCCCccee---------------eCCCCCCcceeeeCCCccccCcccccCc
Q 039216 346 DGPCDGCAGVRFV---------------LCFRCCGSHKVVTGDGLASQCQECNENG 386 (394)
Q Consensus 346 ~~~C~~CGG~RfV---------------pC~~C~GS~K~~~~~~~~lRC~~CNENG 386 (394)
...|..|.|.+++ +|+.|+|+-+++ . ..+|+.|+=+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~---~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E---KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T---SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C---CCCCCCCCCcC
Confidence 4479999998764 899999998886 2 57899998654
No 204
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=82.75 E-value=4.3 Score=32.54 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=33.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
-+|.|.++ .|+.|+.+...|... .+.+..+|++.+. ..++....+ -..+|.+++
T Consensus 21 ~lv~f~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~-i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAP------WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYG-VQGFPTLKV 80 (109)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcC-CCcCCEEEE
Confidence 46666666 499999887666543 3556677777621 123444444 678997643
No 205
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=82.13 E-value=7.2 Score=34.06 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=43.5
Q ss_pred CCCcEEEEEecCCCCCCCCc--hHH----------HHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EE
Q 039216 248 GDESVIFYTTTLRGIRKTFE--DCS----------SVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCp--dCk----------rVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqV--FI 313 (394)
.+..||+|+..| .|. .|+ .+..+|+..+|.+..+|++.+..+. ...| -.++|.+ |.
T Consensus 26 ~~~~vvv~f~a~-----wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La----~~~~-I~~iPTl~lfk 95 (120)
T cd03065 26 YDVLCLLYHEPV-----ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVA----KKLG-LDEEDSIYVFK 95 (120)
T ss_pred CCceEEEEECCC-----cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHH----HHcC-CccccEEEEEE
Confidence 445788888886 454 486 3345566778999999999987544 4444 6788864 78
Q ss_pred CCEEEe
Q 039216 314 KGRYIG 319 (394)
Q Consensus 314 dGkyIG 319 (394)
+|+.+.
T Consensus 96 ~G~~v~ 101 (120)
T cd03065 96 DDEVIE 101 (120)
T ss_pred CCEEEE
Confidence 998553
No 206
>PRK14873 primosome assembly protein PriA; Provisional
Probab=81.91 E-value=1.6 Score=48.25 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=35.2
Q ss_pred CCCCCCCCCcceeeCCCCCCcceeeeCCCccccCcccccCc-cccCCCCC
Q 039216 346 DGPCDGCAGVRFVLCFRCCGSHKVVTGDGLASQCQECNENG-LIICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENG-LirCp~C~ 394 (394)
.-.|..||- .+.|+.|+++-..+ .+...++|..|+-.- -.+||.|.
T Consensus 383 ~l~C~~Cg~--~~~C~~C~~~L~~h-~~~~~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 383 SLACARCRT--PARCRHCTGPLGLP-SAGGTPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred eeEhhhCcC--eeECCCCCCceeEe-cCCCeeECCCCcCCCcCccCCCCc
Confidence 348999985 47999999986654 345689999998643 45899994
No 207
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=81.49 E-value=4.1 Score=32.06 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=34.7
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC---------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF---------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~---------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
-+|.|+++ .|+.|+.....|... .+.+..+|.+.+..+ .+..+ -..+|.+ |-+|+
T Consensus 19 ~lv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAP------WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQ-VRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECC------CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcC-CCcCCEEEEEeCCC
Confidence 45566666 499999876655322 466778888776643 33343 5779975 44664
No 208
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=81.36 E-value=6.6 Score=35.57 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEcCCCHHHHHHHHHHh-CCCCCCcEE--EECCEEEe
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES-------FKVIFFERDVSMHIEFREELWKVL-DCKAVPPRL--FIKGRYIG 319 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes-------~gV~yeErDVSmD~e~reELkell-Gg~~tVPqV--FIdGkyIG 319 (394)
||.|+++ .|+.|+.+...|.. .++.+..+|+..+.++.+.+.-.. -+..++|.+ |.+|+.++
T Consensus 51 vV~Fya~------wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTT------WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5666666 49999988876642 247889999998876555442110 012348864 77887654
No 209
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=81.29 E-value=1.1 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=21.9
Q ss_pred CCCCCCCCCcceee-----CCCCCCcceeee
Q 039216 346 DGPCDGCAGVRFVL-----CFRCCGSHKVVT 371 (394)
Q Consensus 346 ~~~C~~CGG~RfVp-----C~~C~GS~K~~~ 371 (394)
...|..|+|.++++ |..|+|+-++..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 45899999999974 999999877753
No 210
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=81.21 E-value=6.9 Score=35.63 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=40.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFI 313 (394)
+.||... .+.|.+|+-+|+.+||.|+.+.|+... ....++.++.. ...+|.+..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP-~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISP-NNKIPAIVD 57 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCc-CCCCCEEEe
Confidence 4678654 478999999999999999988876542 23456776653 568999987
No 211
>PRK14287 chaperone protein DnaJ; Provisional
Probab=80.77 E-value=1.1 Score=45.67 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=35.2
Q ss_pred CCCCCCCCCcc------eeeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 346 DGPCDGCAGVR------FVLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~R------fVpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
...|..|.|.+ ...|..|+|+-.++..- + ....|+.|+-.|.+ +|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 34688888776 46799999997665332 1 24689999999965 688884
No 212
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=80.73 E-value=4 Score=33.03 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 267 EDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 267 pdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
+.|.++.-+|+..|++|+.+++..... .. ....+|.|-++|+.|+....+..+.
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~~~-------~~-P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANAEF-------MS-PSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCccc-------cC-CCCcccEEEECCEEEeCHHHHHHHH
Confidence 689999999999999999887543211 11 1358999999999999888776543
No 213
>PRK10357 putative glutathione S-transferase; Provisional
Probab=80.68 E-value=4.1 Score=36.48 Aligned_cols=65 Identities=11% Similarity=-0.065 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE-CCEEEecchhHH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI-KGRYIGGAAEVL 325 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI-dGkyIGGaDEL~ 325 (394)
.||+.. .++++.+|+-+|+.+||.|+.+.++.... ..++.++. -..++|.+.. +|..|-....|.
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n-P~g~vP~L~~~~g~~l~eS~aI~ 67 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN-PLGKVPALVTEEGECWFDSPIIA 67 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC-CccCCCeEEeCCCCeeecHHHHH
Confidence 477776 58999999999999999999988875321 12334443 3578999985 665555444443
No 214
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=80.41 E-value=7.2 Score=32.43 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=37.3
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHH-------hCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLE-------SFKVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYI 318 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILe-------s~gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyI 318 (394)
-+|.|.++ .|+.|+.+..+|. ..++.+..+|++.+..+ ....| -.++|.+ |.+|+.+
T Consensus 27 vlV~F~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l----~~~~~-V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSD------WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL----ARKLG-AHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECC------ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH----HHHcC-CccCCEEEEEECCEEE
Confidence 45556666 4999987765542 23677888888877644 33343 6789975 5688654
No 215
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=80.18 E-value=3.5 Score=36.03 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHH----hC--CCcEEEEEcCCCHHHH---HHHHHHhCCCC-CCcEEEE
Q 039216 265 TFEDCSSVRFLLE----SF--KVIFFERDVSMHIEFR---EELWKVLDCKA-VPPRLFI 313 (394)
Q Consensus 265 TCpdCkrVR~ILe----s~--gV~yeErDVSmD~e~r---eELkellGg~~-tVPqVFI 313 (394)
.|+.|+.+.-+|+ .+ ++.|..+|+...+.++ .+++...+ -. .+|.+++
T Consensus 39 WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-I~~~iPT~~~ 96 (119)
T cd02952 39 WCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-LTTGVPTLLR 96 (119)
T ss_pred CCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC-cccCCCEEEE
Confidence 3999997766554 43 4889999997654322 23333332 34 7997643
No 216
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=80.05 E-value=20 Score=33.55 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=37.2
Q ss_pred cEEE-EEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEe
Q 039216 251 SVIF-YTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIG 319 (394)
Q Consensus 251 kVVL-YTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIG 319 (394)
.||| |+.+ .|+.|+.+..+|+.+ .+.|..+|++.. ...++ -..+|.+ |-+|+.++
T Consensus 104 ~VVV~Fya~------wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~-i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 104 WVVVHLYKD------GIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYP-DKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEEEECC------CCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCC-CCCCCEEEEEECCEEEE
Confidence 4555 4445 599999998888654 477888888632 23343 6789975 66887554
No 217
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=80.01 E-value=6.4 Score=30.95 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHH----h----CCCcEEEEEcCC--CHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLE----S----FKVIFFERDVSM--HIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s----~gV~yeErDVSm--D~e~reELkellGg~~tVPqV--FIdGk 316 (394)
.-+|.|+++ .|+.|+.+...|. . ..+.+..+|++. +.. +....| -..+|.+ |-+|+
T Consensus 19 ~~~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~-i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAP------WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA----LKEEYN-VKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECC------CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH----HHHhCC-CccccEEEEEeCCC
Confidence 345666677 4999998864442 2 235677788877 443 334443 5678876 44554
No 218
>PRK14292 chaperone protein DnaJ; Provisional
Probab=79.80 E-value=1.6 Score=44.28 Aligned_cols=47 Identities=32% Similarity=0.747 Sum_probs=32.3
Q ss_pred CCCCCCCCcc-------eeeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVR-------FVLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~R-------fVpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+ ...|..|+|+-.+...- + ....|+.|+-.|.. +|+.|
T Consensus 140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 203 (371)
T PRK14292 140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVC 203 (371)
T ss_pred ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCC
Confidence 4688888866 35788888886654221 1 24578888888855 68877
No 219
>PRK14283 chaperone protein DnaJ; Provisional
Probab=79.46 E-value=2.1 Score=43.69 Aligned_cols=48 Identities=31% Similarity=0.735 Sum_probs=32.4
Q ss_pred CCCCCCCCcc------eeeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCCC
Q 039216 347 GPCDGCAGVR------FVLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYCC 394 (394)
Q Consensus 347 ~~C~~CGG~R------fVpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C~ 394 (394)
..|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.+ +|..|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred ccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence 3677777754 35788888887665322 1 24688888888865 788773
No 220
>PLN02395 glutathione S-transferase
Probab=78.48 E-value=7.8 Score=34.95 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhHHH
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTLHE 329 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL~E 329 (394)
+.||... ...+.+|+-+|..+|+.|+.+.|+... ....++.++.. ..+||.+..+|..|.....|....+
T Consensus 3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQP-FGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 6788643 235899999999999999988876531 22346666553 5799999999887777776655433
No 221
>PRK14293 chaperone protein DnaJ; Provisional
Probab=78.38 E-value=2.5 Score=43.14 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=33.4
Q ss_pred CCCCCCCCcce------eeCCCCCCcceeeeCC----C---ccccCcccccCccc---cCCCC
Q 039216 347 GPCDGCAGVRF------VLCFRCCGSHKVVTGD----G---LASQCQECNENGLI---ICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf------VpC~~C~GS~K~~~~~----~---~~lRC~~CNENGLi---rCp~C 393 (394)
..|..|.|.+. ..|..|+|+-.++..- + ...+|+.|+-.|-+ +|+.|
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (374)
T PRK14293 144 ETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDAC 206 (374)
T ss_pred ccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCC
Confidence 46888877654 5699999987665332 1 24689999888866 77777
No 222
>PRK14291 chaperone protein DnaJ; Provisional
Probab=78.03 E-value=2.5 Score=43.31 Aligned_cols=49 Identities=29% Similarity=0.807 Sum_probs=34.4
Q ss_pred CCCCCCCCCcc------eeeCCCCCCcceeeeCCC---ccccCcccccCccc--cCCCCC
Q 039216 346 DGPCDGCAGVR------FVLCFRCCGSHKVVTGDG---LASQCQECNENGLI--ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~R------fVpC~~C~GS~K~~~~~~---~~lRC~~CNENGLi--rCp~C~ 394 (394)
...|..|.|.+ ...|+.|+|+-.++...+ ....|+.|+--|.+ +|+.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence 34688888876 457888998877665433 25688888888844 577773
No 223
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=77.93 E-value=8.8 Score=33.80 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCCCcE--EEECCEEE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----K-VIFFERDVSMHIEFREELWKVLDCKAVPPR--LFIKGRYI 318 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----g-V~yeErDVSmD~e~reELkellGg~~tVPq--VFIdGkyI 318 (394)
...|||-++.- .|+.|+.+--+|..+ + +.|..+||+..+++.+++. -...|. +|-+|+|+
T Consensus 14 ~klVVVdF~a~-----WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-----I~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRD-----EDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-----ISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCC-----CChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-----ceeCcEEEEEECCcEE
Confidence 34455555442 599999998888754 3 7789999998887655542 234564 56789886
No 224
>PRK11752 putative S-transferase; Provisional
Probab=77.82 E-value=9.7 Score=36.62 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECC---
Q 039216 247 GGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKG--- 315 (394)
Q Consensus 247 gge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdG--- 315 (394)
.+...+.||+.. +++|.+|+-+|+.+ |+.|+.+.|... .....++.++.. ..+||.+..++
T Consensus 40 ~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP-~GkVP~Lv~~dg~~ 111 (264)
T PRK11752 40 VGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINP-NSKIPALLDRSGNP 111 (264)
T ss_pred CCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCC-CCCCCEEEeCCCCC
Confidence 345579999754 79999999999886 888887766543 223456666653 56899998752
Q ss_pred -EEEecchhHHhH
Q 039216 316 -RYIGGAAEVLTL 327 (394)
Q Consensus 316 -kyIGGaDEL~eL 327 (394)
..|.....|...
T Consensus 112 ~~~L~ES~AIl~Y 124 (264)
T PRK11752 112 PIRVFESGAILLY 124 (264)
T ss_pred CeEEEcHHHHHHH
Confidence 455555555443
No 225
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=77.03 E-value=1.9 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.623 Sum_probs=22.3
Q ss_pred eeeCCCCCCcceeeeC----CCccccCccccc
Q 039216 357 FVLCFRCCGSHKVVTG----DGLASQCQECNE 384 (394)
Q Consensus 357 fVpC~~C~GS~K~~~~----~~~~lRC~~CNE 384 (394)
.+.|+.|+...++-.+ .++.+||+.|..
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 3689999999888643 357999999975
No 226
>PF15616 TerY-C: TerY-C metal binding domain
Probab=76.94 E-value=2.3 Score=38.42 Aligned_cols=37 Identities=24% Similarity=0.624 Sum_probs=28.9
Q ss_pred CCCCCCCCc-ceeeCCCCCCcceeee-CCCccccCcccccCcc
Q 039216 347 GPCDGCAGV-RFVLCFRCCGSHKVVT-GDGLASQCQECNENGL 387 (394)
Q Consensus 347 ~~C~~CGG~-RfVpC~~C~GS~K~~~-~~~~~lRC~~CNENGL 387 (394)
..|+.||.. .|+.| .|+ |++- .......||.|..+|-
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeee
Confidence 479999999 89999 575 5553 3346899999998874
No 227
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.60 E-value=3.1 Score=43.31 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q 039216 149 RPDMNSGTLFDPNLLAAFEEAVNQHIRLSQEERKARIDQ 187 (394)
Q Consensus 149 rpd~~s~~lfdp~lla~f~~~~~~~~~~~~~~~~~~~~~ 187 (394)
-||.|.+ +|+-=+-|...=.+|-=|+..++|+.-|.
T Consensus 33 HPD~n~g---~~~AeeKFKEI~eAYEVLsD~eKRa~YD~ 68 (371)
T COG0484 33 HPDRNPG---DKEAEEKFKEINEAYEVLSDPEKRAAYDQ 68 (371)
T ss_pred CCCCCCC---CHHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence 3999998 99999999999999999999999987763
No 228
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=7 Score=35.42 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH-HHHHHHHHHhCCCCCCcEEEECCE-EEecchhHHhH
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI-EFREELWKVLDCKAVPPRLFIKGR-YIGGAAEVLTL 327 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~-e~reELkellGg~~tVPqVFIdGk-yIGGaDEL~eL 327 (394)
.+|.+. ..++|.+|+-+|..+|+.|+.+.|+... ....++..+.. ...||.+..++- .|-....|...
T Consensus 2 ~L~~~~------~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP-~gkVPvL~~~~~~~l~ES~AI~~Y 71 (211)
T COG0625 2 KLYGSP------TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNP-LGKVPALVDDDGEVLTESGAILEY 71 (211)
T ss_pred eeecCC------CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCC-CCCCCEEeeCCCCeeecHHHHHHH
Confidence 356555 3599999999999999999999998775 44466766653 679999988874 45444444433
No 229
>PF13728 TraF: F plasmid transfer operon protein
Probab=75.57 E-value=8.6 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHH----hCCCcEEEEEcCCC--HH---H--HHHHHHHhCCCCCCcEEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLE----SFKVIFFERDVSMH--IE---F--REELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~gV~yeErDVSmD--~e---~--reELkellGg~~tVPqVFI 313 (394)
....+++|+.+ +|++|+...-+|+ .+|+.+..++++-. +. . -..+.+.+| -..+|.+|+
T Consensus 120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~L 189 (215)
T PF13728_consen 120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFL 189 (215)
T ss_pred hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEE
Confidence 44568888888 7999998777775 45888777777522 11 1 133445565 678999875
No 230
>PRK05580 primosome assembly protein PriA; Validated
Probab=75.36 E-value=2.2 Score=46.83 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=34.8
Q ss_pred CCCCCCCCCcceeeCCCCCCcceeeeCCCccccCcccccCc--cccCCCCC
Q 039216 346 DGPCDGCAGVRFVLCFRCCGSHKVVTGDGLASQCQECNENG--LIICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENG--LirCp~C~ 394 (394)
.-.|..||-. +.|+.|+++-.. +.+...++|..|+-.- -.+||.|.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~-h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTL-HRFQRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeE-ECCCCeEECCCCcCCCCCCCCCCCCc
Confidence 4479999864 589999997544 3455789999998765 45799993
No 231
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=75.35 E-value=9.1 Score=30.97 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=32.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh----C---C--CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EECC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES----F---K--VIFFERDVSMHIEFREELWKVLDCKAVPPRL-FIKG 315 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes----~---g--V~yeErDVSmD~e~reELkellGg~~tVPqV-FIdG 315 (394)
-+|.|+++ .|+.|+.+...|.. + + +.+..+|+.....+ .+..+ -.++|.+ |++|
T Consensus 18 vlv~f~a~------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-I~~~Pt~~l~~~ 81 (104)
T cd03000 18 WLVDFYAP------WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFG-VRGYPTIKLLKG 81 (104)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcC-CccccEEEEEcC
Confidence 34555555 59999977766632 2 3 55667777766543 33343 6788976 4444
No 232
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.30 E-value=2.1 Score=48.93 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred CcEEEECCEEE------------ecchhHHhHHHcCCchhhh----ccCCCCCCCCCCCCCCCcce------------ee
Q 039216 308 PPRLFIKGRYI------------GGAAEVLTLHEQGKLRPLF----DGIPIDRSDGPCDGCAGVRF------------VL 359 (394)
Q Consensus 308 VPqVFIdGkyI------------GGaDEL~eL~EsGeL~kLL----k~~~~~~~~~~C~~CGG~Rf------------Vp 359 (394)
.+.|+|+-..| |=++.|+.|...-...+.. ..|+-..+.+.|+.|.|.++ ++
T Consensus 682 ~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 761 (924)
T TIGR00630 682 DKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 761 (924)
T ss_pred CceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccC
Confidence 45678887544 4556676666332111100 11111224678999999986 48
Q ss_pred CCCCCCccee
Q 039216 360 CFRCCGSHKV 369 (394)
Q Consensus 360 C~~C~GS~K~ 369 (394)
|+.|+|++..
T Consensus 762 C~~C~G~R~~ 771 (924)
T TIGR00630 762 CEVCKGKRYN 771 (924)
T ss_pred CCCcCCceeC
Confidence 9999998654
No 233
>PTZ00057 glutathione s-transferase; Provisional
Probab=75.14 E-value=15 Score=33.35 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=48.3
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH-HHH--HHHHH-HhCCCCCCcEEEECCEEEecchhHH
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI-EFR--EELWK-VLDCKAVPPRLFIKGRYIGGAAEVL 325 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~-e~r--eELke-llGg~~tVPqVFIdGkyIGGaDEL~ 325 (394)
++++||+... -..+..|+-+|+..||.|+.+.+.... .+. +++.. ...-...+|.+.++|..|.-...+.
T Consensus 3 ~~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 3 EEIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 3478888763 468889999999999999999875432 221 11111 1222568999999998777666554
Q ss_pred h
Q 039216 326 T 326 (394)
Q Consensus 326 e 326 (394)
.
T Consensus 77 ~ 77 (205)
T PTZ00057 77 R 77 (205)
T ss_pred H
Confidence 4
No 234
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=75.07 E-value=1.6 Score=47.91 Aligned_cols=42 Identities=36% Similarity=0.692 Sum_probs=31.0
Q ss_pred CCCCCCCCCccee----eCCCCCCcceeeeCCC---ccc-----cCcccccCcc
Q 039216 346 DGPCDGCAGVRFV----LCFRCCGSHKVVTGDG---LAS-----QCQECNENGL 387 (394)
Q Consensus 346 ~~~C~~CGG~RfV----pC~~C~GS~K~~~~~~---~~l-----RC~~CNENGL 387 (394)
...|.-|.|.+-| .|+.|+|+-|++.-.. .+. -|+.|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 4489999999876 7999999998885431 122 4888876664
No 235
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=75.00 E-value=7.7 Score=34.08 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EE--CCEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL-FI--KGRYI 318 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV-FI--dGkyI 318 (394)
-||.|.++ .|+.|+.+...|..+ ++.|..+|++.+. + ..+...++ -..+|.+ |+ +|+.+
T Consensus 23 vvV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~-V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYR-VDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcC-CCCCCEEEEECCCCCEE
Confidence 34455555 499999888777642 3567777776542 1 23334454 6789975 55 46543
No 236
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=74.84 E-value=14 Score=32.89 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCcEEEEEcCCCHH-------HHHHHHHHhCCCCCCcEEEECCEEE--ecchhHHhHH
Q 039216 271 SVRFLLESFKVIFFERDVSMHIE-------FREELWKVLDCKAVPPRLFIKGRYI--GGAAEVLTLH 328 (394)
Q Consensus 271 rVR~ILes~gV~yeErDVSmD~e-------~reELkellGg~~tVPqVFIdGkyI--GGaDEL~eL~ 328 (394)
.+...|+..||.+..++++.++. +++.|.. . |...||.++|||+.+ |.|=...+|.
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~-G~e~LPitlVdGeiv~~G~YPt~eEl~ 95 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-E-GAEALPITLVDGEIVKTGRYPTNEELA 95 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H--GGG-SEEEETTEEEEESS---HHHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-c-CcccCCEEEECCEEEEecCCCCHHHHH
Confidence 45667899999999999999853 2233322 2 378999999999854 7775554443
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=8.1 Score=39.37 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEec
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGG 320 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGG 320 (394)
..+|+||+-+= .|+.|....-+|++. ++.+-.+|++.++.+-.. +| -.++|.| |++|+.|-|
T Consensus 43 ~~PVlV~fWap-----~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fg-iqsIPtV~af~dGqpVdg 112 (304)
T COG3118 43 EVPVLVDFWAP-----WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FG-VQSIPTVYAFKDGQPVDG 112 (304)
T ss_pred CCCeEEEecCC-----CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hC-cCcCCeEEEeeCCcCccc
Confidence 34687777663 599999999999764 344567777777755443 33 7889976 899999877
Q ss_pred c
Q 039216 321 A 321 (394)
Q Consensus 321 a 321 (394)
+
T Consensus 113 F 113 (304)
T COG3118 113 F 113 (304)
T ss_pred c
Confidence 7
No 238
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=74.47 E-value=9.4 Score=30.24 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=34.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEcCCCHHHHHHHHHHhCCCC--CCcEEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLES----F--KVIFFERDVSMHIEFREELWKVLDCKA--VPPRLFI 313 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes----~--gV~yeErDVSmD~e~reELkellGg~~--tVPqVFI 313 (394)
+++|.+. +|+.|..++.+|+. + .+.|..+|++.+..+ ...+| -. .+|.|.+
T Consensus 16 ~~~f~~~------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~-i~~~~~P~~~~ 74 (103)
T cd02982 16 LVLFYNK------DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFG-LKEEDLPVIAI 74 (103)
T ss_pred EEEEEcC------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcC-CChhhCCEEEE
Confidence 4455555 59999999998865 2 477888888776543 33344 33 8998754
No 239
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=74.08 E-value=28 Score=30.95 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCCCchHH-----------HHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEE
Q 039216 263 RKTFEDCS-----------SVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRY 317 (394)
Q Consensus 263 RkTCpdCk-----------rVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGky 317 (394)
.+||+.|. .++..|..+||.+...-+.++.. ++.. .....|.|.|||+.
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~---~~~~S~~I~inG~p 71 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFAR---QPLESPTIRINGRP 71 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhh---cccCCCeeeECCEe
Confidence 56899886 45666788888754444444431 2221 13578999999985
No 240
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=73.52 E-value=17 Score=29.92 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=34.7
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-------CCcEEEEEcCCC-HHHHHHHHHHhCCCCCCcEEE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-------KVIFFERDVSMH-IEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-------gV~yeErDVSmD-~e~reELkellGg~~tVPqVF 312 (394)
..-+|.|.++| |+.|+++...|... ++.+-.+|++.+ ..+ ..+..+ ...+|.++
T Consensus 22 k~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~~-v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEELQ-LKSFPTIL 83 (109)
T ss_pred CCEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhcC-CCcCCEEE
Confidence 34567777774 99999988877542 466777887763 322 122233 66899763
No 241
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=70.86 E-value=15 Score=32.19 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=38.4
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHH-HHH------h--CCCcEEEEEcCCCHHHHHHHHH----HhCCCCCCcEE-EE--
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRF-LLE------S--FKVIFFERDVSMHIEFREELWK----VLDCKAVPPRL-FI-- 313 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~-ILe------s--~gV~yeErDVSmD~e~reELke----llGg~~tVPqV-FI-- 313 (394)
..|+||+++- .|++|+.+.. .+. . .++.+..+|++..+++.+.+.+ +.| ...+|.+ |+
T Consensus 16 KpVll~f~a~-----WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~-~~G~Pt~vfl~~ 89 (124)
T cd02955 16 KPIFLSIGYS-----TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTG-QGGWPLNVFLTP 89 (124)
T ss_pred CeEEEEEccC-----CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcC-CCCCCEEEEECC
Confidence 3466655442 6999998854 222 2 2455677888776655443332 334 6688875 55
Q ss_pred CCEEEec
Q 039216 314 KGRYIGG 320 (394)
Q Consensus 314 dGkyIGG 320 (394)
+|+.|-+
T Consensus 90 ~G~~~~~ 96 (124)
T cd02955 90 DLKPFFG 96 (124)
T ss_pred CCCEEee
Confidence 4666633
No 242
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=70.28 E-value=2.5 Score=41.46 Aligned_cols=36 Identities=28% Similarity=0.731 Sum_probs=19.7
Q ss_pred CCCCCCCC--------------CcceeeCCCCCCcceeeeCCCccccCcccccCc
Q 039216 346 DGPCDGCA--------------GVRFVLCFRCCGSHKVVTGDGLASQCQECNENG 386 (394)
Q Consensus 346 ~~~C~~CG--------------G~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENG 386 (394)
.+.|..|| |.||.-|+.|+..-+.. ..+||.|.+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-----R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-----RIKCPYCGNTD 221 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-------TTS-TTT---S
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-----CCCCcCCCCCC
Confidence 46899998 45999999999875543 56899997653
No 243
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=70.25 E-value=3 Score=39.57 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=24.3
Q ss_pred eeeCCCCCCcceeeeCCCccccCcccccCcccc
Q 039216 357 FVLCFRCCGSHKVVTGDGLASQCQECNENGLII 389 (394)
Q Consensus 357 fVpC~~C~GS~K~~~~~~~~lRC~~CNENGLir 389 (394)
-..|+.|+|+-++.... .+|+.|+-.|-++
T Consensus 99 ~~~C~~C~G~G~~i~~~---~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ---RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC---CCCCCCCCccEEe
Confidence 67999999998887432 7899999988754
No 244
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=70.03 E-value=14 Score=28.87 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF--------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~--------gV~yeErDVSmD~e~reELkellGg~~tVPqVF 312 (394)
..-+|.|.++ .|+.|+.+...|... .+.+..+|.+.+. +....+ ...+|.++
T Consensus 19 ~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~-~~~~Pt~~ 78 (104)
T cd02995 19 KDVLVEFYAP------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-----VPSEFV-VDGFPTIL 78 (104)
T ss_pred CcEEEEEECC------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----hhhhcc-CCCCCEEE
Confidence 3456667777 499999887766432 3566777877642 222233 47889764
No 245
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.74 E-value=4.2 Score=45.65 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=35.8
Q ss_pred CCCCCCCCCcceeeCCCCCCcceeeeCCCccccCcccccCcc--ccCCCCC
Q 039216 346 DGPCDGCAGVRFVLCFRCCGSHKVVTGDGLASQCQECNENGL--IICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENGL--irCp~C~ 394 (394)
.-.|..||-. .-|+.|..+ -+++...+.++|..|+-..- ..||.|.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~-lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSP-LTLHKATGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred eeecccCCCc--ccCCCCCcc-eEEecCCCeeEeCCCCCCCCCCCCCCCCC
Confidence 4479999854 589999998 45555567999999998854 4699994
No 246
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=69.59 E-value=30 Score=27.44 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhCCCcEEEEEcCCCH-------HHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 267 EDCSSVRFLLESFKVIFFERDVSMHI-------EFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 267 pdCkrVR~ILes~gV~yeErDVSmD~-------e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
..|.+++-+|...|+.|+.+.|+... ++......+.--..+||.+..+|..+.-...+..
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence 57889999999999999988887542 2221111110024589999998877665555443
No 247
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=69.29 E-value=3.4 Score=48.79 Aligned_cols=41 Identities=24% Similarity=0.737 Sum_probs=26.9
Q ss_pred CCCCCCCCcce-eeCCCCCCcceeeeCCCccccCccccc------CccccCCCC
Q 039216 347 GPCDGCAGVRF-VLCFRCCGSHKVVTGDGLASQCQECNE------NGLIICPYC 393 (394)
Q Consensus 347 ~~C~~CGG~Rf-VpC~~C~GS~K~~~~~~~~lRC~~CNE------NGLirCp~C 393 (394)
..|..||..-+ ..|+.|..+... ...|+.|+- +|-..||.|
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~------vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEP------VYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCC------ceeCccCCCccCCCccccccCCCC
Confidence 47888887533 488888877532 237777765 334578877
No 248
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=68.80 E-value=2.6 Score=37.04 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHH----HhC-CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLL----ESF-KVIFFERDVSMHIEFREELWKVLDCKAVPPRL-FI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~IL----es~-gV~yeErDVSmD~e~reELkellGg~~tVPqV-FI 313 (394)
..-.|++++.+| |+||.+..-+| +.. ++.+..+..+.+.+..+.+. +++...+|.+ |+
T Consensus 41 ~~~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l--t~g~~~IP~~I~~ 104 (129)
T PF14595_consen 41 KPYNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL--TNGGRSIPTFIFL 104 (129)
T ss_dssp S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT--T-SS--SSEEEEE
T ss_pred CCcEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH--hCCCeecCEEEEE
Confidence 445799999997 99999765554 444 66666665544444332222 2457899986 45
No 249
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=68.35 E-value=4.1 Score=49.83 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=34.5
Q ss_pred EEecchhHHhHHHcCCchhhhccCCC-----CCCCCCCCCCCCcce------------eeCCCCCCccee
Q 039216 317 YIGGAAEVLTLHEQGKLRPLFDGIPI-----DRSDGPCDGCAGVRF------------VLCFRCCGSHKV 369 (394)
Q Consensus 317 yIGGaDEL~eL~EsGeL~kLLk~~~~-----~~~~~~C~~CGG~Rf------------VpC~~C~GS~K~ 369 (394)
|+|=+++++.|...=...+. .++.. ..+.+.|+.|.|.+. ++|+.|+|.+..
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 55567888888754433332 22222 224678999999986 489999998754
No 250
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=16 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=37.7
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
...|||++++. .|+-|+.+.-++..+ .+.|..+||+... ++..-.+ -..+|.+ +.+|+
T Consensus 21 ~kliVvdF~a~-----wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~----~~~~~~~-V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 21 DKLVVVDFYAT-----WCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE----EVAKEFN-VKAMPTFVFYKGGE 85 (106)
T ss_pred CCeEEEEEECC-----CCcchhhhhhHHHHHHHHCCCCEEEEEecccCH----hHHHhcC-ceEeeEEEEEECCE
Confidence 34566655542 499999999888765 4667889998733 3333332 6778975 34554
No 251
>PRK10542 glutathionine S-transferase; Provisional
Probab=68.05 E-value=13 Score=33.00 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhCCCcEEEEEcCCCHH---HHHHHHHHhCCCCCCcEEEE-CCEEEecchhHHhH
Q 039216 268 DCSSVRFLLESFKVIFFERDVSMHIE---FREELWKVLDCKAVPPRLFI-KGRYIGGAAEVLTL 327 (394)
Q Consensus 268 dCkrVR~ILes~gV~yeErDVSmD~e---~reELkellGg~~tVPqVFI-dGkyIGGaDEL~eL 327 (394)
.+.+++-+|+.+||.|+.+.|+.... ..+++.++.. ...+|.+.+ +|..|-....|...
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINP-KGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCc-CCCCCeEEeCCCcEeecHHHHHHH
Confidence 47788889999999999887765421 2245666653 578999987 66667666555553
No 252
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=67.31 E-value=24 Score=27.48 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCC-CCCcEEEEC-CEEEecchhHH
Q 039216 268 DCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCK-AVPPRLFIK-GRYIGGAAEVL 325 (394)
Q Consensus 268 dCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~-~tVPqVFId-GkyIGGaDEL~ 325 (394)
.+..+|-+|+..||.|+.+-++.. .....++..... . ..+|.+-++ |..|-..-.+.
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p-~~g~vP~l~~~~~~~l~es~AI~ 71 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP-MFGKVPALEDGDGFVLTESNAIL 71 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT-TSSSSSEEEETTTEEEESHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccc-ccceeeEEEECCCCEEEcHHHHH
Confidence 889999999999999998877753 222366666543 4 699999999 88876655544
No 253
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=66.90 E-value=4.2 Score=35.67 Aligned_cols=19 Identities=37% Similarity=0.861 Sum_probs=8.5
Q ss_pred CCCCCCCcceeeCCCCCCc
Q 039216 348 PCDGCAGVRFVLCFRCCGS 366 (394)
Q Consensus 348 ~C~~CGG~RfVpC~~C~GS 366 (394)
.|..|.|.+.++|..|+|+
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~ 95 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGS 95 (111)
T ss_pred ECCCCCCcceeeCCCCCCC
Confidence 3444444444444444444
No 254
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=65.25 E-value=27 Score=30.40 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE--ECCEEEe
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF--IKGRYIG 319 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqVF--IdGkyIG 319 (394)
...+|+||-=|. +|+=...|..-|+.+ .+.+..+||-.+..+-.++.+.+|=.-.-|||+ -||+.+=
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 457799999885 699999988777643 289999999999999999999997666789875 4777653
No 255
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=64.83 E-value=30 Score=32.06 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=57.0
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCC---CCCCcEEEECCEEEecc---
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDC---KAVPPRLFIKGRYIGGA--- 321 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg---~~tVPqVFIdGkyIGGa--- 321 (394)
..-++++|.+. +|.=|..--+.|+..|+.+.......-. .+++++|= ..+-=...|+|.||=|.
T Consensus 24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d~~----alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDDFL----ALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCcHH----HHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 33578899888 8999999999999999888777665444 34555541 34566889999999885
Q ss_pred hhHHhHHHcCC
Q 039216 322 AEVLTLHEQGK 332 (394)
Q Consensus 322 DEL~eL~EsGe 332 (394)
+.|..|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 77777777766
No 256
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=64.13 E-value=22 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCCCCchHHHH----HHHHHhCCCcEEEEEcCCCH-----HH----HHHHHHHhCC-CCCCcEEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSV----RFLLESFKVIFFERDVSMHI-----EF----REELWKVLDC-KAVPPRLFI 313 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrV----R~ILes~gV~yeErDVSmD~-----e~----reELkellGg-~~tVPqVFI 313 (394)
||+|..+| |++|++. +++-+.+++.+.-+.+.... -+ ...+...+|. ...+|..|+
T Consensus 73 lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 88898885 9999987 66666778887776665331 11 1234444542 258998764
No 257
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=63.36 E-value=37 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC---------CCcEEEEEcCCC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF---------KVIFFERDVSMH 291 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~---------gV~yeErDVSmD 291 (394)
.|+||..+. .|+.|+.....|... ++.+.-+.++.+
T Consensus 20 ~vll~Fwa~-----wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 20 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEEECC-----CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 356665542 599999766665421 455555666544
No 258
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=62.64 E-value=20 Score=34.59 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYI 318 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyI 318 (394)
-+|.|+++ .|+.|+.+...++.. .+.+..+|+..+.. +.+.++ -..+|.+ |-+|+.+
T Consensus 55 vlV~FyAp------WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~~-I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAP------WCSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRFA-IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECC------CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHcC-CCcCCEEEEEECCEEE
Confidence 35566666 499999988877542 25677778776654 444444 6778965 5677654
No 259
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=62.39 E-value=21 Score=30.58 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
--+|.|+.+| |+.|+.+.-.|+.. .+.+-.+|++.+...- ....+ -.++|.+ |.+|+
T Consensus 31 ~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~-I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKH-FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcC-CcccCEEEEEECCc
Confidence 3567778885 99999998877654 2667888888776432 12222 4567864 66765
No 260
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=62.23 E-value=18 Score=30.36 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=31.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC---------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF---------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~---------gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
-||.|+++ .|+.|+.+...++.. .+.+-.+|.+.+. ..++.+..+ -..+|++++
T Consensus 22 vvV~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~-i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYAS------WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFG-VTGYPTLRY 84 (114)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCC-CCCCCEEEE
Confidence 45556666 499999887776532 1445556654332 123444444 567897643
No 261
>PTZ00062 glutaredoxin; Provisional
Probab=61.95 E-value=28 Score=33.17 Aligned_cols=54 Identities=6% Similarity=0.158 Sum_probs=36.8
Q ss_pred CCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEEEec
Q 039216 249 DESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRYIGG 320 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGkyIGG 320 (394)
.+.+|+|+++. .|+.|+.+..+|..+ .+.|..+|.. . +-..+|.+ |-+|+.|+-
T Consensus 17 ~g~~vl~f~a~-----w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~-~V~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 17 TGKLVLYVKSS-----KEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------D-ANNEYGVFEFYQNSQLINS 77 (204)
T ss_pred CCcEEEEEeCC-----CCcchHHHHHHHHHHHHHCCCcEEEEEccc------------c-CcccceEEEEEECCEEEee
Confidence 46778887553 599999999988765 4566666644 2 25678953 467776653
No 262
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=61.60 E-value=5.7 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.584 Sum_probs=20.7
Q ss_pred eeCCCCCCcceeee----CCCccccCccccc
Q 039216 358 VLCFRCCGSHKVVT----GDGLASQCQECNE 384 (394)
Q Consensus 358 VpC~~C~GS~K~~~----~~~~~lRC~~CNE 384 (394)
+.|+.|+....+-. .++..++|+.|++
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 67999998877653 3456899999975
No 263
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=61.20 E-value=18 Score=35.47 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHH----hCCCcEEEEEcCCCHH-------HHHHHHHHhCCCCCCcEEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLE----SFKVIFFERDVSMHIE-------FREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~gV~yeErDVSmD~e-------~reELkellGg~~tVPqVFI 313 (394)
+...||.|..+ .|+.|+...-+|+ .+++.+..++++.+.. .-..+...+| -..+|.+|+
T Consensus 166 ~k~~Lv~F~As------wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFFFKS------DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAVFL 235 (271)
T ss_pred CCeEEEEEECC------CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeEEE
Confidence 44456667777 4999998877665 4577777777654310 0123445554 678998753
No 264
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.02 E-value=31 Score=34.23 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=41.8
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCc--EEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEE
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVI--FFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYI 318 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~--yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyI 318 (394)
-.|-||+-- ||-.|...-..|+++|+. +..+|-..-.. ..++. +--++|-||+||+.+
T Consensus 11 ~~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~---~V~SvP~Vf~DGel~ 70 (265)
T COG5494 11 MEVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK---GVISVPSVFIDGELV 70 (265)
T ss_pred eEEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc---ceeecceEEEcCeEE
Confidence 357788766 899999999999998876 56666554432 11221 256899999999965
No 265
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=59.89 E-value=8.4 Score=39.17 Aligned_cols=26 Identities=27% Similarity=0.781 Sum_probs=14.4
Q ss_pred cceeeCCCCCCcceeeeCCCccccCcccccC
Q 039216 355 VRFVLCFRCCGSHKVVTGDGLASQCQECNEN 385 (394)
Q Consensus 355 ~RfVpC~~C~GS~K~~~~~~~~lRC~~CNEN 385 (394)
.||.-|+.|+..-... ..+|+.|.+.
T Consensus 210 ~RyL~CslC~teW~~~-----R~~C~~Cg~~ 235 (309)
T PRK03564 210 LRYLHCNLCESEWHVV-----RVKCSNCEQS 235 (309)
T ss_pred ceEEEcCCCCCccccc-----CccCCCCCCC
Confidence 3666666666543322 4566666543
No 266
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.63 E-value=9 Score=44.17 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=37.5
Q ss_pred CcEEEECCEEEe------------cchhHHhHHHcCCchhh----hccCCCCCCCCCCCCCCCcce------------ee
Q 039216 308 PPRLFIKGRYIG------------GAAEVLTLHEQGKLRPL----FDGIPIDRSDGPCDGCAGVRF------------VL 359 (394)
Q Consensus 308 VPqVFIdGkyIG------------GaDEL~eL~EsGeL~kL----Lk~~~~~~~~~~C~~CGG~Rf------------Vp 359 (394)
.|.|+|+-..|| =++.++.|...=...+. -..++-..+.+.|+.|.|.++ ++
T Consensus 684 ~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 763 (943)
T PRK00349 684 DKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 763 (943)
T ss_pred CceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCcccc
Confidence 456778775544 45777777633211111 111222224678999999976 47
Q ss_pred CCCCCCcceee
Q 039216 360 CFRCCGSHKVV 370 (394)
Q Consensus 360 C~~C~GS~K~~ 370 (394)
|+.|+|.+..-
T Consensus 764 C~~C~G~R~~~ 774 (943)
T PRK00349 764 CDVCKGKRYNR 774 (943)
T ss_pred CccccCccccc
Confidence 99999987653
No 267
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=57.91 E-value=36 Score=26.64 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHH---------hCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLE---------SFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILe---------s~gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
.+|+||.++- .|++|+.+.+-+- ..++.+..+|++...... .+.. ..+|.++|
T Consensus 18 kpvlv~f~a~-----wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~-----~~~P~~~~ 79 (82)
T PF13899_consen 18 KPVLVDFGAD-----WCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR-----QGYPTFFF 79 (82)
T ss_dssp SEEEEEEETT-----TTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH-----CSSSEEEE
T ss_pred CCEEEEEECC-----CCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC-----ccCCEEEE
Confidence 3466655552 6999998776652 235567777775443322 2222 23898765
No 268
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=56.83 E-value=8.4 Score=27.69 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=16.8
Q ss_pred eCCCCCCcceeeeCCCccccCccc
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQEC 382 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~C 382 (394)
.|+.|+.+.-++....+.+-|+.|
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT
T ss_pred CCcCCcCCceEEcCCCCeEECCCC
Confidence 488888876344445577888888
No 269
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=56.66 E-value=24 Score=31.99 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=36.5
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EE-CCE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESF-----K-VIFFERDVSMHIEFREELWKVLDCKAVPPRL-FI-KGR 316 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~-----g-V~yeErDVSmD~e~reELkellGg~~tVPqV-FI-dGk 316 (394)
||-|+.+| |+.|+.+--+|+.. + +.+..+||+.++++-+++.= ...+|.+ |. +|+
T Consensus 27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I----~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL----YDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc----cCCCcEEEEEECCe
Confidence 44566664 99999998888754 2 45689999998876555421 2245666 44 554
No 270
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=56.30 E-value=36 Score=36.93 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=36.6
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHH-------Hh-CCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EEC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLL-------ES-FKVIFFERDVSMHIEFREELWKVLDCKAVPPRL-FIK 314 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~IL-------es-~gV~yeErDVSmD~e~reELkellGg~~tVPqV-FId 314 (394)
.|+|+.++- .|+.|+.+.... +. .++.+..+|++.+..-..++.+..| ...+|.+ |++
T Consensus 476 ~VlVdF~A~-----WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~-v~g~Pt~~~~~ 542 (571)
T PRK00293 476 PVMLDLYAD-----WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN-VLGLPTILFFD 542 (571)
T ss_pred cEEEEEECC-----cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC-CCCCCEEEEEC
Confidence 455544441 599999875542 12 3577888999876444455666665 6788976 454
No 271
>PRK04023 DNA polymerase II large subunit; Validated
Probab=56.18 E-value=14 Score=43.27 Aligned_cols=72 Identities=19% Similarity=0.401 Sum_probs=43.9
Q ss_pred EEEECCEEEecchhHHhHHH-cCCchhhhccCCCCCCCCCCCCCCCcce-eeCCCCCCcceeeeCCCccccCcccccCcc
Q 039216 310 RLFIKGRYIGGAAEVLTLHE-QGKLRPLFDGIPIDRSDGPCDGCAGVRF-VLCFRCCGSHKVVTGDGLASQCQECNENGL 387 (394)
Q Consensus 310 qVFIdGkyIGGaDEL~eL~E-sGeL~kLLk~~~~~~~~~~C~~CGG~Rf-VpC~~C~GS~K~~~~~~~~lRC~~CNENGL 387 (394)
.+|-=|.+=|.--.|..+.+ .|... ...+...|..||-..+ ..|+.|+... ....+|+.|-..+-
T Consensus 596 ~LFPiG~~GG~~R~i~~A~~~~g~~e-------VEVg~RfCpsCG~~t~~frCP~CG~~T------e~i~fCP~CG~~~~ 662 (1121)
T PRK04023 596 VLFPIGNAGGSTRDINKAAKYKGTIE-------VEIGRRKCPSCGKETFYRRCPFCGTHT------EPVYRCPRCGIEVE 662 (1121)
T ss_pred ccccccccCcccccHHHHHhcCCcee-------ecccCccCCCCCCcCCcccCCCCCCCC------CcceeCccccCcCC
Confidence 35644444344445666665 23321 1123457999998744 4899998762 23678999966543
Q ss_pred -ccCCCCC
Q 039216 388 -IICPYCC 394 (394)
Q Consensus 388 -irCp~C~ 394 (394)
-.||.|.
T Consensus 663 ~y~CPKCG 670 (1121)
T PRK04023 663 EDECEKCG 670 (1121)
T ss_pred CCcCCCCC
Confidence 5699883
No 272
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=56.02 E-value=9.8 Score=38.58 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=5.2
Q ss_pred ceeeCCCCCCc
Q 039216 356 RFVLCFRCCGS 366 (394)
Q Consensus 356 RfVpC~~C~GS 366 (394)
|+.-|+.|+..
T Consensus 209 RyL~CslC~te 219 (305)
T TIGR01562 209 RYLSCSLCATE 219 (305)
T ss_pred eEEEcCCCCCc
Confidence 44455555443
No 273
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=55.39 E-value=62 Score=27.30 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh-------C--CCcEEEEEcCCC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES-------F--KVIFFERDVSMH 291 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes-------~--gV~yeErDVSmD 291 (394)
.|+||+.+. .|+.|......|+. . ++.+..+++..+
T Consensus 19 ~vll~F~at-----wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 19 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred EEEEEEECC-----CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 355555442 59999986655532 2 455555665544
No 274
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=54.84 E-value=63 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCHH--HHHHHHH-HhCCCCCCcEEEECCEEEec
Q 039216 280 KVIFFERDVSMHIE--FREELWK-VLDCKAVPPRLFIKGRYIGG 320 (394)
Q Consensus 280 gV~yeErDVSmD~e--~reELke-llGg~~tVPqVFIdGkyIGG 320 (394)
.+.|..+|+..... ..+++.+ +...-.-.|.|.|+|++||-
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 46689999977643 4445444 33334567999999999984
No 275
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=53.58 E-value=21 Score=36.10 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHH
Q 039216 266 FEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVL 325 (394)
Q Consensus 266 CpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~ 325 (394)
-|+|-++.-+|+..+|+|+.++-++-. ++ ...++|-|=.||++|.+.+-+.
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~~--------rS-r~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLKR--------RS-RNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred ChHHHHHHHHHHHhCCCceecccccee--------ec-cCCCcceEEeCCeeccccHHHH
Confidence 479999999999999999999887531 12 2569999999999999988753
No 276
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=53.54 E-value=25 Score=29.91 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=17.6
Q ss_pred CCCCcEEEECCEEEecchhHHhH
Q 039216 305 KAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 305 ~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
-..+|.+||||+++.|.-.+..|
T Consensus 134 i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 134 ITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp -SSSSEEEETTCEEETTTSHHHH
T ss_pred CccccEEEECCEEeCCCCCHHHH
Confidence 57899999999999876555443
No 277
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=53.20 E-value=15 Score=30.64 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCcEEEEEcCC-CHHHHHHHH------HHhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 271 SVRFLLESFKVIFFERDVSM-HIEFREELW------KVLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 271 rVR~ILes~gV~yeErDVSm-D~e~reELk------ellGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
.+..++...|+....++-.+ +..+.+.++ ..+| -..+|.++|+|+.+-|+.....|.
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALG-ITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcC-CCcCCeEEECCEEecCCCCHHHHH
Confidence 45666777776643322211 122222222 2233 678999999999999998765543
No 278
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.97 E-value=82 Score=26.03 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHhC----CCcEEEEEcCCCH
Q 039216 265 TFEDCSSVRFLLESF----KVIFFERDVSMHI 292 (394)
Q Consensus 265 TCpdCkrVR~ILes~----gV~yeErDVSmD~ 292 (394)
.|+.|......|..+ ++.+..+++....
T Consensus 36 ~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 36 WCAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 599999877776543 4666666654443
No 279
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=52.25 E-value=4.7 Score=35.04 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=3.9
Q ss_pred CCCCCCCCh
Q 039216 152 MNSGTLFDP 160 (394)
Q Consensus 152 ~~s~~lfdp 160 (394)
|.|.|||+-
T Consensus 60 ltSf~id~~ 68 (101)
T PF09026_consen 60 LTSFPIDDK 68 (101)
T ss_dssp HCTS---HH
T ss_pred hhccchhHh
Confidence 777777654
No 280
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=52.06 E-value=9.7 Score=38.63 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=63.8
Q ss_pred CChhhhhhhcCCCCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEE
Q 039216 234 SNPLLNFELKCPPGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRL 311 (394)
Q Consensus 234 ~d~L~~f~~~cppgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqV 311 (394)
..|+..+...-||.. .|+|.-+. -...++||-.+..+||.|+.+||+.- ...-.++.++. -...||++
T Consensus 12 ~~~~~~~ka~~~~e~---~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlN-p~gevPVl 81 (325)
T KOG4420|consen 12 DAPEAASKAHWPRES---LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLN-PGGEVPVL 81 (325)
T ss_pred CCchhhcCCCCchhc---ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecC-CCCCCceE
Confidence 456777777776655 88998884 46889999999999999999999854 22233455443 35678976
Q ss_pred EECCEEEecchhHHhHHHc
Q 039216 312 FIKGRYIGGAAEVLTLHEQ 330 (394)
Q Consensus 312 FIdGkyIGGaDEL~eL~Es 330 (394)
.-+...|-.+..|....|+
T Consensus 82 ~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 82 IHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ecCCeecccHHHHHHHHHH
Confidence 6555677888888877766
No 281
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.50 E-value=22 Score=34.48 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCCCcEEEEEecCCCCCCCCchHHHHHHHHH----hCCCcEEEEEc
Q 039216 247 GGDESVIFYTTTLRGIRKTFEDCSSVRFLLE----SFKVIFFERDV 288 (394)
Q Consensus 247 gge~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~gV~yeErDV 288 (394)
.+...|++||=. .||||++.-.-|. .-+|.+..+-+
T Consensus 116 ~ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 116 DAPRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 344556666666 8999999866554 33477666654
No 282
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=51.02 E-value=6.7 Score=29.67 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCcceeeCCCCCCcceee----eC--CCccccCcccccC
Q 039216 353 AGVRFVLCFRCCGSHKVV----TG--DGLASQCQECNEN 385 (394)
Q Consensus 353 GG~RfVpC~~C~GS~K~~----~~--~~~~lRC~~CNEN 385 (394)
||.-||.|..|.---.+. .. +...+||.+|.+-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 688999999997532222 11 1248999999873
No 283
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=50.96 E-value=10 Score=34.46 Aligned_cols=8 Identities=50% Similarity=1.481 Sum_probs=4.4
Q ss_pred CCCCCCCc
Q 039216 348 PCDGCAGV 355 (394)
Q Consensus 348 ~C~~CGG~ 355 (394)
.|..|.|+
T Consensus 112 ~C~~C~Gs 119 (147)
T cd03031 112 PCSECNGS 119 (147)
T ss_pred ECCCCCCc
Confidence 45555554
No 284
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=50.83 E-value=8.2 Score=26.19 Aligned_cols=25 Identities=36% Similarity=0.862 Sum_probs=13.6
Q ss_pred eCCCCCCcceeeeCCCccccCccccc
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQECNE 384 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~CNE 384 (394)
-|+.|.+....... +..++|+.|+.
T Consensus 5 fC~~CG~~t~~~~~-g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG-GWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SS-SS-EEESSSS-
T ss_pred ccCcCCccccCCCC-cCEeECCCCcC
Confidence 47777777665533 57899999863
No 285
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.10 E-value=23 Score=31.16 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCcEEEEEc-CCCHHHHHHHHH------HhCCCCCCcEEEECCEEEecchhHHhHH
Q 039216 270 SSVRFLLESFKVIFFERDV-SMHIEFREELWK------VLDCKAVPPRLFIKGRYIGGAAEVLTLH 328 (394)
Q Consensus 270 krVR~ILes~gV~yeErDV-SmD~e~reELke------llGg~~tVPqVFIdGkyIGGaDEL~eL~ 328 (394)
..+..++...|+......- ..+.++++.+.+ .+| -..+|.++|||+++-|.+.+..+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~g-i~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARG-VFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCcCCeEEECCeeecccccHHHHH
Confidence 3466677777775432221 223334444332 233 788999999999999998876553
No 286
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.93 E-value=11 Score=25.95 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=14.5
Q ss_pred eCCCCCCcceeeeC--CCccccCccccc
Q 039216 359 LCFRCCGSHKVVTG--DGLASQCQECNE 384 (394)
Q Consensus 359 pC~~C~GS~K~~~~--~~~~lRC~~CNE 384 (394)
.|..|+-.--++.. .+....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 45555553333321 245778888886
No 287
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=47.38 E-value=11 Score=28.46 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=17.5
Q ss_pred eeeCCCCCCcceeeeCCC--------ccccCccccc
Q 039216 357 FVLCFRCCGSHKVVTGDG--------LASQCQECNE 384 (394)
Q Consensus 357 fVpC~~C~GS~K~~~~~~--------~~lRC~~CNE 384 (394)
..||+.| |+..+..... .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 3589999 7766654331 3577888864
No 288
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=47.20 E-value=17 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.607 Sum_probs=26.2
Q ss_pred cceeeCCCCCCcceeeeCCC-----ccccCcccccCccc
Q 039216 355 VRFVLCFRCCGSHKVVTGDG-----LASQCQECNENGLI 388 (394)
Q Consensus 355 ~RfVpC~~C~GS~K~~~~~~-----~~lRC~~CNENGLi 388 (394)
..++.|+.|++..++-++.. --+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 36899999999998877654 36789999765554
No 289
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=47.03 E-value=16 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.635 Sum_probs=23.2
Q ss_pred ceeeCCCCCCcceeeeCCC--ccccCcccccCccc
Q 039216 356 RFVLCFRCCGSHKVVTGDG--LASQCQECNENGLI 388 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~~~--~~lRC~~CNENGLi 388 (394)
.||.|+.|+-.--.+..++ -+++|-+|....-|
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 4789999988755554333 38999999865443
No 290
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=46.87 E-value=12 Score=25.90 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=18.8
Q ss_pred eeCCCCCCcceeeeC----CCccccCccccc
Q 039216 358 VLCFRCCGSHKVVTG----DGLASQCQECNE 384 (394)
Q Consensus 358 VpC~~C~GS~K~~~~----~~~~lRC~~CNE 384 (394)
+.|+.|+..-++-.+ ++..++|+.|..
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 578888887666532 334788888865
No 291
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=46.71 E-value=6.1 Score=43.33 Aligned_cols=127 Identities=17% Similarity=0.338 Sum_probs=77.0
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhCCCc--EEEEEcCCC----H-------HHHHHHHHHhC--------CCCCCcEE
Q 039216 253 IFYTTTLRGIRKTFEDCSSVRFLLESFKVI--FFERDVSMH----I-------EFREELWKVLD--------CKAVPPRL 311 (394)
Q Consensus 253 VLYTTSLrgIRkTCpdCkrVR~ILes~gV~--yeErDVSmD----~-------e~reELkellG--------g~~tVPqV 311 (394)
||+.-.++ .++-|..++++|....-. +...+++.. . .+|+-|..+-+ ....+++-
T Consensus 384 Vl~~WDf~----~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~ 459 (580)
T KOG1829|consen 384 VLHNWDFT----KYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQR 459 (580)
T ss_pred ceecccCc----ccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 56666654 688899999999886433 455555443 1 12222222111 11456666
Q ss_pred EECCEEEecchhHHhH-----HHcCCchhhhccCCCCC--CCCCCCCCCCcceeeCCCCCCcceeeeC-CCccccCcccc
Q 039216 312 FIKGRYIGGAAEVLTL-----HEQGKLRPLFDGIPIDR--SDGPCDGCAGVRFVLCFRCCGSHKVVTG-DGLASQCQECN 383 (394)
Q Consensus 312 FIdGkyIGGaDEL~eL-----~EsGeL~kLLk~~~~~~--~~~~C~~CGG~RfVpC~~C~GS~K~~~~-~~~~lRC~~CN 383 (394)
+..-+||---.++..| ..+|.|..+|+.+-+.. .-..|..|-+.+|+ |..|....-+|-- .....||..|+
T Consensus 460 ~~~~~yL~e~~~~~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfi-Ce~Cq~~~iiyPF~~~~~~rC~~C~ 538 (580)
T KOG1829|consen 460 LAVRRYLTESPHLFSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFI-CELCQHNDIIYPFETRNTRRCSTCL 538 (580)
T ss_pred hhhhhhhccCchhhhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeee-eeeccCCCcccccccccceeHHHHH
Confidence 6666666544444333 46788888887655432 23369999999995 9999666555532 34578888876
Q ss_pred c
Q 039216 384 E 384 (394)
Q Consensus 384 E 384 (394)
-
T Consensus 539 a 539 (580)
T KOG1829|consen 539 A 539 (580)
T ss_pred H
Confidence 3
No 292
>PRK02935 hypothetical protein; Provisional
Probab=46.63 E-value=11 Score=33.37 Aligned_cols=25 Identities=32% Similarity=0.794 Sum_probs=20.9
Q ss_pred eeCCCCCCcceeeeCCCccccCcccccC
Q 039216 358 VLCFRCCGSHKVVTGDGLASQCQECNEN 385 (394)
Q Consensus 358 VpC~~C~GS~K~~~~~~~~lRC~~CNEN 385 (394)
|.|+.|+--.|.. |+.-.|.+||+.
T Consensus 71 V~CP~C~K~TKmL---GrvD~CM~C~~P 95 (110)
T PRK02935 71 VICPSCEKPTKML---GRVDACMHCNQP 95 (110)
T ss_pred eECCCCCchhhhc---cceeecCcCCCc
Confidence 5899999888877 567899999985
No 293
>PTZ00102 disulphide isomerase; Provisional
Probab=46.59 E-value=54 Score=33.33 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=36.1
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHH-------hC--CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCE
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLE-------SF--KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGR 316 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILe-------s~--gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGk 316 (394)
.-+|.|+++| |+.|+++...+. .. +|.+-.+|.+.+..+ ....| -..+|.+ |-+|.
T Consensus 51 ~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l----~~~~~-i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMEL----AQEFG-VRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHH----HHhcC-CCcccEEEEEECCc
Confidence 4566777774 999997764332 22 477888888877654 33343 5678875 44554
No 294
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=33 Score=33.27 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEcCCCHH-HHHHHHHHhCCCCCCcEEE-ECCEEEecchhHHhHHHcCCchhhhcc
Q 039216 265 TFEDCSSVRFLLESFKVIFFERDVSMHIE-FREELWKVLDCKAVPPRLF-IKGRYIGGAAEVLTLHEQGKLRPLFDG 339 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~yeErDVSmD~e-~reELkellGg~~tVPqVF-IdGkyIGGaDEL~eL~EsGeL~kLLk~ 339 (394)
.||+|.++|.++--++|+++..=+..|.+ .-- ++.| ..+||.+. =+|++++-.-++......-.=..+|++
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG-~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIG-QKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCcccChh---hhhc-ccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 79999999999999999998877766632 111 2234 88999876 578898877776665544333344443
No 295
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=15 Score=38.28 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=36.4
Q ss_pred CCCCCCCCCcc--------eeeCCCCCCcceeeeC-CCccccCcccccCccccCCCCC
Q 039216 346 DGPCDGCAGVR--------FVLCFRCCGSHKVVTG-DGLASQCQECNENGLIICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~R--------fVpC~~C~GS~K~~~~-~~~~lRC~~CNENGLirCp~C~ 394 (394)
.-.|.+|-|.+ -+-|+.|.| +... .+.-.+|.-||-.|.-+|+.|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G---~~~~k~gt~~~C~~C~G~G~~~C~tC~ 252 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG---VPPPKIGTHDLCYMCHGRGIKECHTCK 252 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccC---CCCCCCCccchhhhccCCCcccCCccc
Confidence 45799998888 788999999 3322 2458899999999999999984
No 296
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=45.65 E-value=8.6 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=24.9
Q ss_pred CCCCCCCCCc------ceeeCCCCCCcceeeeCCCccccC
Q 039216 346 DGPCDGCAGV------RFVLCFRCCGSHKVVTGDGLASQC 379 (394)
Q Consensus 346 ~~~C~~CGG~------RfVpC~~C~GS~K~~~~~~~~lRC 379 (394)
..-|..||+. +.+.|..|.|=-|..+.|+..-.|
T Consensus 15 ~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC 54 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTC 54 (475)
T ss_pred ccccccccCccccceeeeeehhhhhhHHHHHhhcCcceec
Confidence 3579999984 679999999986666555444444
No 297
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=45.43 E-value=14 Score=32.30 Aligned_cols=28 Identities=21% Similarity=0.660 Sum_probs=20.6
Q ss_pred ceeeCCCCCCcceeeeC-CC-ccccCcccc
Q 039216 356 RFVLCFRCCGSHKVVTG-DG-LASQCQECN 383 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~-~~-~~lRC~~CN 383 (394)
.||.|+.|+-.--.+.. ++ -+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccC
Confidence 47899999988555443 33 389999996
No 298
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.93 E-value=33 Score=29.13 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEecCCCCCCCCchHHHHHHHH----HhC----CCcEEEEEcCCCHH
Q 039216 246 PGGDESVIFYTTTLRGIRKTFEDCSSVRFLL----ESF----KVIFFERDVSMHIE 293 (394)
Q Consensus 246 pgge~kVVLYTTSLrgIRkTCpdCkrVR~IL----es~----gV~yeErDVSmD~e 293 (394)
|.+...|++|+.- .||+|.++-..| +.+ .|.|..+++..+..
T Consensus 10 ~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 10 PDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 4555667777777 699999774443 443 68899999976643
No 299
>PF14353 CpXC: CpXC protein
Probab=44.79 E-value=11 Score=32.46 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHhCCCc-EEEEEcCCCHHHHHHHH
Q 039216 265 TFEDCSSVRFLLESFKVI-FFERDVSMHIEFREELW 299 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~-yeErDVSmD~e~reELk 299 (394)
|||.|.. .+.+. |..+|++.++++++.+.
T Consensus 3 tCP~C~~------~~~~~v~~~I~~~~~p~l~e~il 32 (128)
T PF14353_consen 3 TCPHCGH------EFEFEVWTSINADEDPELKEKIL 32 (128)
T ss_pred CCCCCCC------eeEEEEEeEEcCcCCHHHHHHHH
Confidence 6888876 23333 78899999998888875
No 300
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=44.71 E-value=87 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHhCCCc---EEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE-CCEEEecchhHHhH
Q 039216 265 TFEDCSSVRFLLESFKVI---FFERDVSMHIEFREELWKVLDCKAVPPRLFI-KGRYIGGAAEVLTL 327 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~---yeErDVSmD~e~reELkellGg~~tVPqVFI-dGkyIGGaDEL~eL 327 (394)
.=+.|-++..+|+-.+.+ |+.+-.+.-. ++ -...+|.+.. +|+.+.|+..+.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~--------~S-ptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW--------LS-PTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC--------cC-CCCCCCEEEECCCcEEECHHHHHHh
Confidence 458999999999999999 6665554321 11 1458999999 99999999998754
No 301
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=44.65 E-value=12 Score=41.66 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=13.3
Q ss_pred cCCC-CCCCcEEEEEecCCCCCCCCchHHH
Q 039216 243 KCPP-GGDESVIFYTTTLRGIRKTFEDCSS 271 (394)
Q Consensus 243 ~cpp-gge~kVVLYTTSLrgIRkTCpdCkr 271 (394)
+||- ++.+++++=.+. |+-|.-
T Consensus 4 ~C~~C~g~G~i~v~~e~-------c~vc~g 26 (715)
T COG1107 4 KCPECGGKGKIVVGEEE-------CPVCHG 26 (715)
T ss_pred cccccCCCceEeeeeee-------cccccc
Confidence 3442 556777666555 777764
No 302
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=44.61 E-value=60 Score=32.41 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=36.9
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHH-------hCC--CcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECCEE
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLE-------SFK--VIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKGRY 317 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILe-------s~g--V~yeErDVSmD~e~reELkellGg~~tVPqV--FIdGky 317 (394)
-+|.|+++| |+.|+++...+. ..+ |.+..+|.+.+.. +.+.+| -..+|.+ |-+|+.
T Consensus 21 ~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD----LAQKYG-VSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH----HHHhCC-CccccEEEEEeCCcc
Confidence 466777774 999998765443 334 7788888887754 344444 5678875 455653
No 303
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.50 E-value=7.4 Score=44.51 Aligned_cols=73 Identities=23% Similarity=0.487 Sum_probs=0.0
Q ss_pred EEEECCEEEecchhHHhHHHcCCchhhhccCCCCCCCCCCCCCCCcce-eeCCCCCCcceeeeCCCccccCcccccC-cc
Q 039216 310 RLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRSDGPCDGCAGVRF-VLCFRCCGSHKVVTGDGLASQCQECNEN-GL 387 (394)
Q Consensus 310 qVFIdGkyIGGaDEL~eL~EsGeL~kLLk~~~~~~~~~~C~~CGG~Rf-VpC~~C~GS~K~~~~~~~~lRC~~CNEN-GL 387 (394)
.+|-=|..=|.--.|....+.+. -.+...-+...|..||-..| ..|+.|.+.... ..+||.|+.. .-
T Consensus 624 ~LFPIG~~GG~~R~i~~A~~~~~-----g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~------~~~Cp~C~~~~~~ 692 (900)
T PF03833_consen 624 VLFPIGEAGGSRRDIQKAAKKGK-----GTIEVEIGRRRCPKCGKETFYNRCPECGSHTEP------VYVCPDCGIEVEE 692 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccCcccccHHHHHhcCC-----CeeEEeeecccCcccCCcchhhcCcccCCcccc------ceeccccccccCc
Confidence 35644443333345555555554 11111223557999998876 589999887543 4677777643 22
Q ss_pred ccCCCC
Q 039216 388 IICPYC 393 (394)
Q Consensus 388 irCp~C 393 (394)
-.||.|
T Consensus 693 ~~C~~C 698 (900)
T PF03833_consen 693 DECPKC 698 (900)
T ss_dssp ------
T ss_pred cccccc
Confidence 367776
No 304
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=44.49 E-value=9.5 Score=33.92 Aligned_cols=52 Identities=27% Similarity=0.655 Sum_probs=34.5
Q ss_pred cEEEECCEEEecchhHHhHHHcCCchhhhccCCCCCCCCCCCCCCCcceeeCCCCCCcceeeeCCC--ccccCccccc
Q 039216 309 PRLFIKGRYIGGAAEVLTLHEQGKLRPLFDGIPIDRSDGPCDGCAGVRFVLCFRCCGSHKVVTGDG--LASQCQECNE 384 (394)
Q Consensus 309 PqVFIdGkyIGGaDEL~eL~EsGeL~kLLk~~~~~~~~~~C~~CGG~RfVpC~~C~GS~K~~~~~~--~~lRC~~CNE 384 (394)
-++.|+|+| ....|+.+|..+ -..||.|+.|+..--.+..++ -+++|.+|..
T Consensus 69 ~~lii~G~~-----------~~~~i~~~L~~f-------------I~~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 69 GRLIINGRF-----------SSKQIQDLLDKF-------------IKEYVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp TEEEEESSS-----------SCCHHHHHHHHH-------------HCHHSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred CEEEEEEec-----------CHHHHHHHHHHH-------------HHHEEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 566677653 445566666654 235789999988755554333 4999999974
No 305
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=44.44 E-value=19 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.599 Sum_probs=22.5
Q ss_pred ceeeCCCCCCcceeeeCC-Cc-cccCcccccCcc
Q 039216 356 RFVLCFRCCGSHKVVTGD-GL-ASQCQECNENGL 387 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~~-~~-~lRC~~CNENGL 387 (394)
.||.|+.|+-.--.+..+ +. +++|.+|..-.-
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 129 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAP 129 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCc
Confidence 588999998885444433 33 789999976543
No 306
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.19 E-value=67 Score=30.89 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHhH
Q 039216 266 FEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLTL 327 (394)
Q Consensus 266 CpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~eL 327 (394)
...+..+|.+|+-.+|.|++.-+++... ..+++..+. -.++|.+-|||..|.-.-.+...
T Consensus 12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~p-fgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 12 RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMP-FGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCC-CCCCCEEeECCEeeccHHHHHHH
Confidence 3689999999999999999999988864 334444332 56899999999988766555433
No 307
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=43.41 E-value=30 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcC
Q 039216 246 PGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF-----KVIFFERDVS 289 (394)
Q Consensus 246 pgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-----gV~yeErDVS 289 (394)
|.+...|++|+.- .||+|.++...|... .+.+..+++.
T Consensus 3 ~~a~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDY------NCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 3445566666655 699999887766542 3667777764
No 308
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=43.15 E-value=11 Score=33.46 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred eeeCCCCCCcceeeeCCCccccCcccccCc
Q 039216 357 FVLCFRCCGSHKVVTGDGLASQCQECNENG 386 (394)
Q Consensus 357 fVpC~~C~GS~K~~~~~~~~lRC~~CNENG 386 (394)
-|.|++|+--.|.. ++.-+|.+|++.-
T Consensus 69 ~V~CP~C~K~TKmL---Gr~D~CM~C~~pL 95 (114)
T PF11023_consen 69 QVECPNCGKQTKML---GRVDACMHCKEPL 95 (114)
T ss_pred eeECCCCCChHhhh---chhhccCcCCCcC
Confidence 46799999888876 4567999999853
No 309
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=42.67 E-value=1e+02 Score=30.38 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=55.6
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCH--HHHHHHHHHhCCCCCCcEEEECCEEEecchh---H
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHI--EFREELWKVLDCKAVPPRLFIKGRYIGGAAE---V 324 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~--e~reELkellGg~~tVPqVFIdGkyIGGaDE---L 324 (394)
++=|.|.=.-.+....=+|-.+++..|..+|+.+.+++++..+ .+..-|.+ .+.-||||-.. +
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~------------~d~IyVgGGNTF~LL 99 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK------------ADIIYVGGGNTFNLL 99 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh------------ccEEEECCchHHHHH
Confidence 3344555444556666689999999999999999999998874 22233332 45668888766 5
Q ss_pred HhHHHcCCchhhhccCCC
Q 039216 325 LTLHEQGKLRPLFDGIPI 342 (394)
Q Consensus 325 ~eL~EsGeL~kLLk~~~~ 342 (394)
+.|.+-|-+.-+.+.+..
T Consensus 100 ~~lke~gld~iIr~~vk~ 117 (224)
T COG3340 100 QELKETGLDDIIRERVKA 117 (224)
T ss_pred HHHHHhCcHHHHHHHHHc
Confidence 666777777666665543
No 310
>PHA00626 hypothetical protein
Probab=42.49 E-value=18 Score=28.76 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=13.8
Q ss_pred CCCCCCCcceeeCCCCCC
Q 039216 348 PCDGCAGVRFVLCFRCCG 365 (394)
Q Consensus 348 ~C~~CGG~RfVpC~~C~G 365 (394)
.|+.||-.-.+.|..|.+
T Consensus 2 ~CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCCceeeeeceecc
Confidence 478888777777777777
No 311
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=42.41 E-value=1.3e+02 Score=27.35 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=19.1
Q ss_pred CCchHHHHHHHHH---hCCCcEEEEEcCCCH
Q 039216 265 TFEDCSSVRFLLE---SFKVIFFERDVSMHI 292 (394)
Q Consensus 265 TCpdCkrVR~ILe---s~gV~yeErDVSmD~ 292 (394)
.|+.|.+..-.|. ..++.+.-++++.+.
T Consensus 79 wC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~ 109 (185)
T PRK15412 79 WCPTCRAEHQYLNQLSAQGIRVVGMNYKDDR 109 (185)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 5999998655554 447777777765553
No 312
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=42.09 E-value=17 Score=26.20 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=17.8
Q ss_pred ceeeCCCCCCc-ceeeeCC--CccccCccccc
Q 039216 356 RFVLCFRCCGS-HKVVTGD--GLASQCQECNE 384 (394)
Q Consensus 356 RfVpC~~C~GS-~K~~~~~--~~~lRC~~CNE 384 (394)
+.+||+.|.|+ ++.+... .+..-|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 35789999887 3444332 24566777754
No 313
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=41.76 E-value=14 Score=38.72 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=36.6
Q ss_pred hHHHcCCchhhhccCCCCCCCCCCCCCCCcceeeCCCCCCc-ceeeeCC--CccccCcccccCcccc
Q 039216 326 TLHEQGKLRPLFDGIPIDRSDGPCDGCAGVRFVLCFRCCGS-HKVVTGD--GLASQCQECNENGLII 389 (394)
Q Consensus 326 eL~EsGeL~kLLk~~~~~~~~~~C~~CGG~RfVpC~~C~GS-~K~~~~~--~~~lRC~~CNENGLir 389 (394)
..|+.++|+.+|.+| -..||.|+.|.-. .-..+.. .-.+.|-+|.--|.+.
T Consensus 78 G~Hd~~KLqdlLdgF-------------IkKFVlC~~C~NPETel~itk~q~i~~~CkACG~r~~~d 131 (400)
T KOG2767|consen 78 GAHEASKLQDLLDGF-------------IKKFVLCPSCENPETELIITKKQTISLKCKACGFRSDMD 131 (400)
T ss_pred ccccHHHHHHHHHHH-------------HHHheeCcCCCCCceeEEecccchhhhHHHHcCCccccc
Confidence 457889999999987 3468899988776 3333332 2478999998777653
No 314
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.04 E-value=1.4e+02 Score=26.67 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHh---CCCcEEEEEcCCC
Q 039216 265 TFEDCSSVRFLLES---FKVIFFERDVSMH 291 (394)
Q Consensus 265 TCpdCkrVR~ILes---~gV~yeErDVSmD 291 (394)
.|+.|+.....|+. .++.+.-+++...
T Consensus 74 wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 74 WCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred cCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 59999987666544 3677777776433
No 315
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=40.99 E-value=63 Score=30.91 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=34.8
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhC----CCcEE-----------EEEcCCCHHH---HHHHHHHhCC-CCCCcEEE
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESF----KVIFF-----------ERDVSMHIEF---REELWKVLDC-KAVPPRLF 312 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~----gV~ye-----------ErDVSmD~e~---reELkellGg-~~tVPqVF 312 (394)
|-|||+- .|.-|=-+-++|..+ +|-.- ..|-...++| +..+.+..|. ..=.||++
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 4578887 799999888888754 34322 3444444444 3344555542 34469999
Q ss_pred ECCE-EEecch
Q 039216 313 IKGR-YIGGAA 322 (394)
Q Consensus 313 IdGk-yIGGaD 322 (394)
|||+ +.+|.+
T Consensus 76 VnG~~~~~g~~ 86 (202)
T PF06764_consen 76 VNGREHRVGSD 86 (202)
T ss_dssp ETTTEEEETT-
T ss_pred ECCeeeeeccC
Confidence 9996 566665
No 316
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=40.84 E-value=22 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=15.5
Q ss_pred eCCCCCCcceeeeCCCccccCcccc
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQECN 383 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~CN 383 (394)
.|+.|+..+-..+.+....+|.+|.
T Consensus 20 ~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 20 VCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCeeeEEeCCCCeEECCCCC
Confidence 3888877632233444677888875
No 317
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=21 Score=36.17 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=16.6
Q ss_pred hhccCCCcccHHHHHhhhhh
Q 039216 68 EEIEEPDIIDVEELMKDLED 87 (394)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~ 87 (394)
.....|++||--|||.+|++
T Consensus 39 ~~~~~~~~i~s~e~~~~l~~ 58 (281)
T KOG2824|consen 39 SSPTGPEVINSWELMLDLDD 58 (281)
T ss_pred CCCCchhhhhhhhhccCccc
Confidence 34556789999999999987
No 318
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=58 Score=31.68 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=47.1
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC---HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH---IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD---~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
.+-++|+ .| |..|.+ +||-.|.=++|.|+.+-|+.- .++-.+++++.. ..+||.+.|||..|-..-.+..
T Consensus 4 ~KpiLYS-YW---rSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNP-m~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 4 AKPILYS-YW---RSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINP-MEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred ccchhhh-hh---cccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCc-hhhCCeEEECCEEeehHHHHHH
Confidence 3455664 33 446765 677777777888777666543 344557887653 6799999999998865554444
Q ss_pred H
Q 039216 327 L 327 (394)
Q Consensus 327 L 327 (394)
.
T Consensus 77 Y 77 (217)
T KOG0868|consen 77 Y 77 (217)
T ss_pred H
Confidence 3
No 319
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.42 E-value=23 Score=37.70 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=36.7
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCc-EEEEEcCCC-HHHHHHHHHHhCCCCCCcEEEECCEEEec
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVI-FFERDVSMH-IEFREELWKVLDCKAVPPRLFIKGRYIGG 320 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~-yeErDVSmD-~e~reELkellGg~~tVPqVFIdGkyIGG 320 (394)
.--|.+- ||..|-.|.+.|.-+.|- -....+..| .-|++|...+- --.||.||.||+..|.
T Consensus 120 FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~--IMaVPtvflnGe~fg~ 182 (520)
T COG3634 120 FETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARN--IMAVPTVFLNGEEFGQ 182 (520)
T ss_pred EEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhcc--ceecceEEEcchhhcc
Confidence 4456655 577777776666654322 111222222 45777877542 4579999999997764
No 320
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=38.82 E-value=44 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC------CCcEEEEEcC
Q 039216 247 GGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF------KVIFFERDVS 289 (394)
Q Consensus 247 gge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~------gV~yeErDVS 289 (394)
.+...|++|+.- .||+|..+...+... +|.|..+.+.
T Consensus 14 ~~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 455566666665 799999877666432 5666655554
No 321
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=38.58 E-value=1.7e+02 Score=24.26 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=23.9
Q ss_pred CCchHHHHHHHH-------HhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE
Q 039216 265 TFEDCSSVRFLL-------ESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRL 311 (394)
Q Consensus 265 TCpdCkrVR~IL-------es~gV~yeErDVSmD~e~reELkellGg~~tVPqV 311 (394)
.|+.|..-..-| ...++.+.-+..+...... .+.+.. ..++|.+
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~--~~~~p~~ 85 (149)
T cd02970 35 GCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK--FLPFPVY 85 (149)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc--CCCCeEE
Confidence 599999744333 3456776666655443333 333333 3456643
No 322
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.56 E-value=27 Score=43.15 Aligned_cols=52 Identities=21% Similarity=0.480 Sum_probs=33.3
Q ss_pred EEecchhHHhHHHcCCchhhhccCCC-----CCCCCCCCCCCCcce---------eeCCCCCCccee
Q 039216 317 YIGGAAEVLTLHEQGKLRPLFDGIPI-----DRSDGPCDGCAGVRF---------VLCFRCCGSHKV 369 (394)
Q Consensus 317 yIGGaDEL~eL~EsGeL~kLLk~~~~-----~~~~~~C~~CGG~Rf---------VpC~~C~GS~K~ 369 (394)
|+|=+++++.|...-...+.. +++. ..+.+.|+.|.|.+. ++|+.|+|.+..
T Consensus 687 Y~g~fd~IR~lFA~~~~ak~~-g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 687 YIKAFDDLRELFAEQPRSKRL-GLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred ehhhhHHHHHHHhhChHHHHc-CCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 455567888776544433322 1222 224678999999985 589999997654
No 323
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=38.56 E-value=1.4e+02 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=17.5
Q ss_pred CCchHHHHHHHH-------HhCCCcEEEEEcCCCH
Q 039216 265 TFEDCSSVRFLL-------ESFKVIFFERDVSMHI 292 (394)
Q Consensus 265 TCpdCkrVR~IL-------es~gV~yeErDVSmD~ 292 (394)
.|+.|......| ...++.+..++.+.+.
T Consensus 72 ~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 72 WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 699999754444 2234667777765553
No 324
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.19 E-value=1e+02 Score=32.25 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=36.4
Q ss_pred CCCcEEEEEecCCCCCCCCchH--HHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhC
Q 039216 248 GDESVIFYTTTLRGIRKTFEDC--SSVRFLLESFKVIFFERDVSMHIEFREELWKVLD 303 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdC--krVR~ILes~gV~yeErDVSmD~e~reELkellG 303 (394)
....|+|.++||. ||.-- ..+-.-|...+|++..+-++..-.+=.+|.+-+|
T Consensus 163 ~sREVLii~ssls----T~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~icK~l~kaT~ 216 (378)
T KOG2807|consen 163 VSREVLIIFSSLS----TCDPGDIYETIDKLKAYKIRVSVIGLSAEVFICKELCKATG 216 (378)
T ss_pred cceEEEEEEeeec----ccCcccHHHHHHHHHhhCeEEEEEeechhHHHHHHHHHhhC
Confidence 3456777777765 56544 3555668889999999988877666666666665
No 325
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=37.52 E-value=26 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=20.5
Q ss_pred ceeeCCCCCCcceeeeC-CC-ccccCcccccCc
Q 039216 356 RFVLCFRCCGSHKVVTG-DG-LASQCQECNENG 386 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~-~~-~~lRC~~CNENG 386 (394)
.||.|+.|+-.--.+.. ++ -+++|-+|..-+
T Consensus 97 ~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 97 EYVICSECGLPDTRLVKEDRVLMLRCDACGAHR 129 (201)
T ss_pred heEECCCCCCCCcEEEEcCCeEEEEcccCCCCc
Confidence 47888888877444433 33 278899887654
No 326
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=37.48 E-value=16 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=11.1
Q ss_pred eCCCCCCcceeeeCCCccccCcccc
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQECN 383 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~CN 383 (394)
.|+.|++.. ++..+..-..|+.|.
T Consensus 5 ~C~~C~~~~-i~~~~~~~~~C~~Cg 28 (33)
T PF08792_consen 5 KCSKCGGNG-IVNKEDDYEVCIFCG 28 (33)
T ss_pred EcCCCCCCe-EEEecCCeEEcccCC
Confidence 455555543 222333455566554
No 327
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=37.08 E-value=62 Score=26.73 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHH-HHHhCCC--------cEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EEC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRF-LLESFKV--------IFFERDVSMHIEFREELWKVLDCKAVPPRL-FIK 314 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~-ILes~gV--------~yeErDVSmD~e~reELkellGg~~tVPqV-FId 314 (394)
..|+||..+= .|++|+.+.+ +|..-.| -+...|++... ...+...++ ...+|.+ ||+
T Consensus 18 K~llv~~~~~-----~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e--~~~~~~~~~-~~~~P~~~~i~ 84 (114)
T cd02958 18 KWLLVYLQSE-----DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE--GQRFLQSYK-VDKYPHIAIID 84 (114)
T ss_pred ceEEEEEecC-----CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc--HHHHHHHhC-ccCCCeEEEEe
Confidence 4577787773 7999998643 4433222 23445665422 234555564 6778975 664
No 328
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.97 E-value=24 Score=30.71 Aligned_cols=24 Identities=21% Similarity=0.714 Sum_probs=15.0
Q ss_pred CCCCCCCCCc------ceeeCCCCCCccee
Q 039216 346 DGPCDGCAGV------RFVLCFRCCGSHKV 369 (394)
Q Consensus 346 ~~~C~~CGG~------RfVpC~~C~GS~K~ 369 (394)
...|..||.. .|..|+.|++....
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 4578888843 23348888875433
No 329
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.71 E-value=22 Score=37.85 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=27.8
Q ss_pred CCCCCCCCCCC-------cceeeCCCCCCcceeeeCCCccccCcccccCcc
Q 039216 344 RSDGPCDGCAG-------VRFVLCFRCCGSHKVVTGDGLASQCQECNENGL 387 (394)
Q Consensus 344 ~~~~~C~~CGG-------~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENGL 387 (394)
+....|..|.+ .+.+.|.+|+-+... ..+||.|...-|
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------~~~Cp~C~s~~l 264 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------PKTCPQCGSEDL 264 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCC------CCCCCCCCCCee
Confidence 34568999983 456789999866443 578999987644
No 330
>smart00594 UAS UAS domain.
Probab=35.96 E-value=1.7e+02 Score=24.73 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred cEEEEEecCCCCCCCCchHHHH----------HHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE-EEC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSV----------RFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRL-FIK 314 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrV----------R~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqV-FId 314 (394)
.++||..+ ..|++|... .++|+. ++-+-..|+..... ..+...++ ..++|.+ |++
T Consensus 29 ~~lv~~~~-----~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~~-~~~~P~~~~l~ 94 (122)
T smart00594 29 LLWLYLHS-----QDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFYK-LDSFPYVAIVD 94 (122)
T ss_pred CEEEEEeC-----CCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhcC-cCCCCEEEEEe
Confidence 45666655 259999863 334544 33445578776654 35666664 6678876 555
No 331
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=35.40 E-value=1e+02 Score=30.52 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHH----HhCCCcEEEEEcCCC--HHH-----HHHHHHHhCCCCCCcEEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLL----ESFKVIFFERDVSMH--IEF-----REELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~IL----es~gV~yeErDVSmD--~e~-----reELkellGg~~tVPqVFI 313 (394)
....+++|+.+ .|++|++.--+| +.+|+.+.-++++.. +.+ -..+...+| -..+|.+|+
T Consensus 150 ~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~Pal~L 219 (256)
T TIGR02739 150 QSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLG-VKYFPALYL 219 (256)
T ss_pred hceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcC-CccCceEEE
Confidence 44568888888 799999877777 456877777766543 211 122344454 567898875
No 332
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=34.86 E-value=99 Score=33.21 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=35.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhC-------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEE--EECC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESF-------KVIFFERDVSMHIEFREELWKVLDCKAVPPRL--FIKG 315 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~-------gV~yeErDVSmD~e~reELkellGg~~tVPqV--FIdG 315 (394)
-||.|+.+| |+.|+.+..+|+.. ++.+..+|++.+.. +.....++ -..+|.| |.+|
T Consensus 374 VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~-I~~~PTii~Fk~g 438 (463)
T TIGR00424 374 WLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQ-LGSFPTILFFPKH 438 (463)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcC-CCccceEEEEECC
Confidence 456677775 99999988776432 47788888887631 11222232 5578875 5565
No 333
>PLN02189 cellulose synthase
Probab=34.68 E-value=21 Score=41.75 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=26.5
Q ss_pred CCCCCCCCCc--------ceeeCCCCCCc----ceeeeCCCccccCccccc
Q 039216 346 DGPCDGCAGV--------RFVLCFRCCGS----HKVVTGDGLASQCQECNE 384 (394)
Q Consensus 346 ~~~C~~CGG~--------RfVpC~~C~GS----~K~~~~~~~~lRC~~CNE 384 (394)
...|.-||+. -||.|..|+=. |--+-++.+...||.|+-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt 84 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKT 84 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCC
Confidence 4589999988 79999999533 223334446677777763
No 334
>PLN02309 5'-adenylylsulfate reductase
Probab=34.25 E-value=65 Score=34.44 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC-------CCcEEEEEcC-CCHHHHHHHHHHhCCCCCCcEE--EECC
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF-------KVIFFERDVS-MHIEFREELWKVLDCKAVPPRL--FIKG 315 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~-------gV~yeErDVS-mD~e~reELkellGg~~tVPqV--FIdG 315 (394)
+..-||.|+++| |+.|+.+...|... +|.|-.+|++ .+..+-. +.++ -..+|.| |.+|
T Consensus 365 ~k~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~---~~~~-I~~~PTil~f~~g 432 (457)
T PLN02309 365 KEPWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAK---QELQ-LGSFPTILLFPKN 432 (457)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHH---hhCC-CceeeEEEEEeCC
Confidence 445677888885 99999888777533 4677788877 4443321 1233 5678876 4444
No 335
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=33.96 E-value=25 Score=36.76 Aligned_cols=55 Identities=25% Similarity=0.478 Sum_probs=39.3
Q ss_pred CCEEEecchhHHhHHHcCCchhhh--ccCCCCCCCCCCCCCCCc-----------ceeeCCCCCCcce
Q 039216 314 KGRYIGGAAEVLTLHEQGKLRPLF--DGIPIDRSDGPCDGCAGV-----------RFVLCFRCCGSHK 368 (394)
Q Consensus 314 dGkyIGGaDEL~eL~EsGeL~kLL--k~~~~~~~~~~C~~CGG~-----------RfVpC~~C~GS~K 368 (394)
+|..+-|.+++..+.+.|-.+.|| ..+........|..|+-. .+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 378999999999999999999997 333332233568888732 2346888887753
No 336
>PTZ00102 disulphide isomerase; Provisional
Probab=32.99 E-value=72 Score=32.43 Aligned_cols=54 Identities=6% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHhC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLESF--------KVIFFERDVSMHIEFREELWKVLDCKAVPPRLF 312 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~--------gV~yeErDVSmD~e~reELkellGg~~tVPqVF 312 (394)
+..-+|.|.++ .|+.|+.+..+|... .+.+..+|.+.+... ....+ ...+|.++
T Consensus 375 ~k~vlv~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~-v~~~Pt~~ 436 (477)
T PTZ00102 375 DKDVLLEIYAP------WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFS-WSAFPTIL 436 (477)
T ss_pred CCCEEEEEECC------CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCC-CcccCeEE
Confidence 33445555556 499999888877542 255777888766532 22222 56788763
No 337
>PRK07220 DNA topoisomerase I; Validated
Probab=32.83 E-value=44 Score=37.49 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=28.1
Q ss_pred CCCCCCCCC----------cceeeCCC---CCCcceeeeCCC----ccccCccccc-------Cc----cccCCCCC
Q 039216 346 DGPCDGCAG----------VRFVLCFR---CCGSHKVVTGDG----LASQCQECNE-------NG----LIICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG----------~RfVpC~~---C~GS~K~~~~~~----~~lRC~~CNE-------NG----LirCp~C~ 394 (394)
...|..||+ .+|+-|+. |.-..... ..+ ....||.|+. .| -..||.|.
T Consensus 589 ~~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~-~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~ 664 (740)
T PRK07220 589 IGKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLP-KSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCN 664 (740)
T ss_pred ccccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCC-CCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCC
Confidence 357999984 34788865 65333221 111 2457999974 12 35788873
No 338
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=32.40 E-value=29 Score=34.22 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHH----hCCCcEEEEEcCCC--HHHH-----HHHHHHhCCCCCCcEEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLE----SFKVIFFERDVSMH--IEFR-----EELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~gV~yeErDVSmD--~e~r-----eELkellGg~~tVPqVFI 313 (394)
....+++|+.| +|++|+..--+|+ .+|+.+.-+.++-- +.+. ......+| ...+|.+|+
T Consensus 143 ~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~PAl~L 212 (248)
T PRK13703 143 EHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG-VKYFPALML 212 (248)
T ss_pred hcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC-CcccceEEE
Confidence 44678888888 8999998766665 45776666655431 2211 11223444 567898875
No 339
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=31.84 E-value=25 Score=34.73 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCCCCCCCcceeeCCCCCCcceeeeCC
Q 039216 346 DGPCDGCAGVRFVLCFRCCGSHKVVTGD 373 (394)
Q Consensus 346 ~~~C~~CGG~RfVpC~~C~GS~K~~~~~ 373 (394)
...|..-.|..+++|+.|.|+-++..+.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccc
Confidence 3467888899999999999999987543
No 340
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=31.80 E-value=2.4e+02 Score=23.75 Aligned_cols=45 Identities=18% Similarity=0.030 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCCCCCchHHHHHH----H---HHhCCCcEEEEEcCCCHHHHHHHHH
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRF----L---LESFKVIFFERDVSMHIEFREELWK 300 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~----I---Les~gV~yeErDVSmD~e~reELke 300 (394)
.||.|..+. .|+.|....- + +...+|.+..+.+..+...++.+.+
T Consensus 31 ~vv~f~~~~-----~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 31 VVVNFWASA-----WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEEESTT-----TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEEEccC-----CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 345555551 3999995442 2 3456789999988888775555544
No 341
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.74 E-value=29 Score=33.37 Aligned_cols=43 Identities=21% Similarity=0.582 Sum_probs=26.9
Q ss_pred CCCCCCCCCccee-------eCCCCCCc-ceeeeCCCccccCcccccCcccc
Q 039216 346 DGPCDGCAGVRFV-------LCFRCCGS-HKVVTGDGLASQCQECNENGLII 389 (394)
Q Consensus 346 ~~~C~~CGG~RfV-------pC~~C~GS-~K~~~~~~~~lRC~~CNENGLir 389 (394)
...|..||..+.+ +|..|+-- +++. .--....|..|+++|-++
T Consensus 60 ~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~-~C~~~~~C~~Cg~~GH~~ 110 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSN-HCPKPKKCYNCGETGHLS 110 (190)
T ss_pred ccccchhcccCcccccCChhHhhhcCCCCcccc-cCCcccccccccccCccc
Confidence 4579999988764 56688211 2221 111247899999998653
No 342
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=31.37 E-value=38 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=14.4
Q ss_pred ceeeCCCCCCc-ceeeeCC---CccccCcccc
Q 039216 356 RFVLCFRCCGS-HKVVTGD---GLASQCQECN 383 (394)
Q Consensus 356 RfVpC~~C~GS-~K~~~~~---~~~lRC~~CN 383 (394)
+..||+.|.|+ ++.+..+ .+..-|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 45799999998 3442333 2566788883
No 343
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.20 E-value=1.3e+02 Score=26.44 Aligned_cols=67 Identities=9% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCcEEEEEecCCCCCCCCchHH------HHHHHHHh--------CCCcEEEEEcCCC--HHHHHHHHHHh-CCCCCCcEE
Q 039216 249 DESVIFYTTTLRGIRKTFEDCS------SVRFLLES--------FKVIFFERDVSMH--IEFREELWKVL-DCKAVPPRL 311 (394)
Q Consensus 249 e~kVVLYTTSLrgIRkTCpdCk------rVR~ILes--------~gV~yeErDVSmD--~e~reELkell-Gg~~tVPqV 311 (394)
..+++||.... .|.-|- ....+|+. +...|..+||... ...-.++.+.. ..-.-.|.|
T Consensus 4 ~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPli 78 (106)
T COG4837 4 EAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLI 78 (106)
T ss_pred eeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEE
Confidence 45678887763 466664 34444442 3455889999755 33444454433 234567999
Q ss_pred EECCEEEec
Q 039216 312 FIKGRYIGG 320 (394)
Q Consensus 312 FIdGkyIGG 320 (394)
.|++++|+.
T Consensus 79 vvedeiVae 87 (106)
T COG4837 79 VVEDEIVAE 87 (106)
T ss_pred EEcceEeec
Confidence 999999974
No 344
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.10 E-value=31 Score=40.54 Aligned_cols=28 Identities=25% Similarity=0.727 Sum_probs=18.2
Q ss_pred eCCCCCCcceeeeCCCccccCcccccC--ccccCCCC
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQECNEN--GLIICPYC 393 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~CNEN--GLirCp~C 393 (394)
-|+.|+-.- ...+||.|.+. ..-+||.|
T Consensus 628 fCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 628 KCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred cCCCCCCcC-------CcccCCCCCCCCCcceeCccc
Confidence 566666541 35677777765 56677777
No 345
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=30.66 E-value=41 Score=27.43 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHHh
Q 039216 265 TFEDCSSVRFLLES 278 (394)
Q Consensus 265 TCpdCkrVR~ILes 278 (394)
.|+.|......|..
T Consensus 31 ~C~~C~~~~~~l~~ 44 (123)
T cd03011 31 WCPVCRFTSPTVNQ 44 (123)
T ss_pred cChhhhhhChHHHH
Confidence 59999988666654
No 346
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.54 E-value=45 Score=40.07 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=41.5
Q ss_pred EEECCEEEecchhHHhHH--------HcCCchhhh--ccCCCCC---CCCCCCCCCCcc--eeeCCCCCCcceeeeCCCc
Q 039216 311 LFIKGRYIGGAAEVLTLH--------EQGKLRPLF--DGIPIDR---SDGPCDGCAGVR--FVLCFRCCGSHKVVTGDGL 375 (394)
Q Consensus 311 VFIdGkyIGGaDEL~eL~--------EsGeL~kLL--k~~~~~~---~~~~C~~CGG~R--fVpC~~C~GS~K~~~~~~~ 375 (394)
+|-=|..=|.--.|.++. +.|.+.--+ ..||..+ ....|..||..- -..|+.|+..- .....+
T Consensus 631 LFPig~aGG~qR~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev--~~des~ 708 (1337)
T PRK14714 631 LFPIGEAGGAQRDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEV--PPDESG 708 (1337)
T ss_pred cccccccCcccccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCccccccCcccCCcCCCceeCccCCCcc--CCCccc
Confidence 454443333334466666 334432222 3344432 345899999985 34799998852 222223
Q ss_pred cccCcccccC
Q 039216 376 ASQCQECNEN 385 (394)
Q Consensus 376 ~lRC~~CNEN 385 (394)
+.+||.|+-+
T Consensus 709 a~~CP~CGtp 718 (1337)
T PRK14714 709 RVECPRCDVE 718 (1337)
T ss_pred cccCCCCCCc
Confidence 7899999854
No 347
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=30.46 E-value=39 Score=24.51 Aligned_cols=9 Identities=22% Similarity=0.697 Sum_probs=4.9
Q ss_pred cccCccccc
Q 039216 376 ASQCQECNE 384 (394)
Q Consensus 376 ~lRC~~CNE 384 (394)
..+||.|+.
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 455555543
No 348
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=30.33 E-value=17 Score=31.71 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCC
Q 039216 109 KENIGP 114 (394)
Q Consensus 109 ken~~p 114 (394)
.|+..|
T Consensus 39 de~p~p 44 (101)
T PF09026_consen 39 DEVPVP 44 (101)
T ss_dssp ------
T ss_pred ccccch
Confidence 344443
No 349
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=30.18 E-value=24 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=17.3
Q ss_pred ceeeCCCCCCcceeeeCC--------------CccccCccccc
Q 039216 356 RFVLCFRCCGSHKVVTGD--------------GLASQCQECNE 384 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~~--------------~~~lRC~~CNE 384 (394)
.|..|+.|||.-..+..+ ..|.+|+.|+.
T Consensus 90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~k 132 (147)
T PF01927_consen 90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGK 132 (147)
T ss_pred CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCC
Confidence 355777777753332111 24889999974
No 350
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=29.29 E-value=2.2e+02 Score=25.68 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=24.7
Q ss_pred CcEEEEEecCCCCCCCCchHHHHHHHHH----hCCCcEEEEEcCC
Q 039216 250 ESVIFYTTTLRGIRKTFEDCSSVRFLLE----SFKVIFFERDVSM 290 (394)
Q Consensus 250 ~kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~gV~yeErDVSm 290 (394)
..||.|..+| |+.|++..-.|. .+++.+.-++++.
T Consensus 52 ~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 52 YALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 3488888885 999998776665 4566666666553
No 351
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=1.6e+02 Score=27.86 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHHHHhCCCCCCcEEEECCEEEecchhHHh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELWKVLDCKAVPPRLFIKGRYIGGAAEVLT 326 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELkellGg~~tVPqVFIdGkyIGGaDEL~e 326 (394)
++++|+.- .-+.|.++.-.++..|+.|+.+.|+.. .....++..+.. ..++|.+-=+|-.+-....|..
T Consensus 2 ~~~ly~~~------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP-~~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGHL------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNP-LGKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeecC------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCc-CCCCCeEecCCeEEeeHHHHHH
Confidence 46788887 468899999999999999999977655 334566665543 6799998888877777655543
No 352
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.76 E-value=61 Score=24.62 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=28.0
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEECC
Q 039216 252 VIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDCKAVPPRLFIKG 315 (394)
Q Consensus 252 VVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSmD~e~reELkellGg~~tVPqVFIdG 315 (394)
+.||++. .-.....++.+|++.||.+...|-.+... .-. .| ....+.|+|..
T Consensus 1 ~~l~~~~------~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g-~~~~~~v~V~~ 52 (67)
T PF09413_consen 1 KKLYTAG------DPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PG-TGGQVEVYVPE 52 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS--------S---SSSEEEEEEG
T ss_pred CEEEEcC------CHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cC-ccCceEEEECH
Confidence 4577777 45789999999999999998887765432 001 22 33348888875
No 353
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.22 E-value=33 Score=30.14 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCcEEEEEcC-CCHHHHHHHHH------HhCCCCCCcEEEECCE-EEecchhHHhHH
Q 039216 270 SSVRFLLESFKVIFFERDVS-MHIEFREELWK------VLDCKAVPPRLFIKGR-YIGGAAEVLTLH 328 (394)
Q Consensus 270 krVR~ILes~gV~yeErDVS-mD~e~reELke------llGg~~tVPqVFIdGk-yIGGaDEL~eL~ 328 (394)
..+..++...|+...+.+-. .+...++.+.+ .+| -..+|.++|||+ .+-|.+.+..|.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~g-v~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLG-VFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT-CSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcC-CcccCEEEECCEEEEECCCCHHHHH
Confidence 44666666677654333322 22344443332 233 789999999999 788888776553
No 354
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=27.67 E-value=1.1e+02 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCCcEEEEEecCC--CCCCCCchHHHHHHHHH----hC--CCcEEEEEcCCCHHHHH---HHHH--HhCCCCCCcEEE
Q 039216 248 GDESVIFYTTTLR--GIRKTFEDCSSVRFLLE----SF--KVIFFERDVSMHIEFRE---ELWK--VLDCKAVPPRLF 312 (394)
Q Consensus 248 ge~kVVLYTTSLr--gIRkTCpdCkrVR~ILe----s~--gV~yeErDVSmD~e~re---ELke--llGg~~tVPqVF 312 (394)
...++.||+++.+ .-+.-||+|.++.-+++ .. +..+.++.|..-+.++. .++. .+. -..+|.|+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~-l~~IPTLi 94 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK-LKGIPTLI 94 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee-eeecceEE
Confidence 3356666666543 23456999999885554 32 56688888865555543 3333 121 45789886
No 355
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=27.42 E-value=2.9e+02 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES 278 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes 278 (394)
-||.|.++ .|+.|......|+.
T Consensus 24 vvl~F~~~------wC~~C~~~~p~l~~ 45 (114)
T cd02967 24 TLLFFLSP------TCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEEECC------CCcchHhHhHHHHH
Confidence 34455555 59999987666644
No 356
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=27.32 E-value=37 Score=31.03 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=4.2
Q ss_pred CCCCCCCc
Q 039216 348 PCDGCAGV 355 (394)
Q Consensus 348 ~C~~CGG~ 355 (394)
.|..||-.
T Consensus 114 ~C~~Cg~~ 121 (146)
T PF07295_consen 114 VCENCGHE 121 (146)
T ss_pred ecccCCCE
Confidence 45555543
No 357
>PLN02436 cellulose synthase A
Probab=26.73 E-value=36 Score=40.16 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=26.7
Q ss_pred CCCCCCCCCc--------ceeeCCCCCCc-cee---eeCCCccccCccccc
Q 039216 346 DGPCDGCAGV--------RFVLCFRCCGS-HKV---VTGDGLASQCQECNE 384 (394)
Q Consensus 346 ~~~C~~CGG~--------RfVpC~~C~GS-~K~---~~~~~~~lRC~~CNE 384 (394)
...|.-||+. =||.|-.|+=. |+. +.++.+...||.|+-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt 86 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCC
Confidence 5589999987 79999999643 333 333445677777763
No 358
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=26.26 E-value=47 Score=34.78 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=40.6
Q ss_pred CCEEEecchhHHhHHHcCCchhhh--ccCCCCCCCCCCCCCCCccee-----------eCCCCCCcce
Q 039216 314 KGRYIGGAAEVLTLHEQGKLRPLF--DGIPIDRSDGPCDGCAGVRFV-----------LCFRCCGSHK 368 (394)
Q Consensus 314 dGkyIGGaDEL~eL~EsGeL~kLL--k~~~~~~~~~~C~~CGG~RfV-----------pC~~C~GS~K 368 (394)
+|..+-|.+++..+.+.|-.+.|| ..+........|..||...-. .|+.|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 378899999999999999999996 344333334578999876432 3888888744
No 359
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.85 E-value=31 Score=37.78 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=25.7
Q ss_pred ceeeCCCCCCcceeeeCCCccccCccccc
Q 039216 356 RFVLCFRCCGSHKVVTGDGLASQCQECNE 384 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~~~~~lRC~~CNE 384 (394)
--|.|..||++.++...++....||.|-.
T Consensus 27 t~VnCwFCnk~t~vpyq~rNswTCpsCEQ 55 (611)
T KOG4623|consen 27 TTVNCWFCNKKTEVPYQGRNSWTCPSCEQ 55 (611)
T ss_pred ceEEEEEecCcceeccCCCCCCcCCcHHh
Confidence 35899999999999999988999999953
No 360
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=25.74 E-value=54 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=15.2
Q ss_pred CCCCcEEEECCEEEecchh
Q 039216 305 KAVPPRLFIKGRYIGGAAE 323 (394)
Q Consensus 305 ~~tVPqVFIdGkyIGGaDE 323 (394)
-..+|.++|||+++-+...
T Consensus 141 i~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 141 ITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred CCCCCeEEECCEEEEChhh
Confidence 6789999999998755443
No 361
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=25.45 E-value=3e+02 Score=20.81 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=22.5
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHH----hC---CCcEEEEEcCCC
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLE----SF---KVIFFERDVSMH 291 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILe----s~---gV~yeErDVSmD 291 (394)
-|+.|..+ .|+.|.+....|. .+ ++.+.-++++.+
T Consensus 22 ~ll~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWAS------WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeecc------cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 34555555 5999996554443 33 577888888774
No 362
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=25.42 E-value=80 Score=22.90 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=24.4
Q ss_pred ceeeCCCCCCcceeeeCCC--ccccCcccccCccccCC
Q 039216 356 RFVLCFRCCGSHKVVTGDG--LASQCQECNENGLIICP 391 (394)
Q Consensus 356 RfVpC~~C~GS~K~~~~~~--~~lRC~~CNENGLirCp 391 (394)
+.+.|..|+.........+ ...+|..++..|. .|+
T Consensus 4 g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~-~C~ 40 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK-GCP 40 (58)
T ss_pred CcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC-CCC
Confidence 5677888877755554433 4789999998886 365
No 363
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.42 E-value=63 Score=37.19 Aligned_cols=49 Identities=22% Similarity=0.558 Sum_probs=37.4
Q ss_pred CCCCCCCCCc---ceeeCCCCCCcceeeeCCC------ccccCcccccCccc-------cCCCCC
Q 039216 346 DGPCDGCAGV---RFVLCFRCCGSHKVVTGDG------LASQCQECNENGLI-------ICPYCC 394 (394)
Q Consensus 346 ~~~C~~CGG~---RfVpC~~C~GS~K~~~~~~------~~lRC~~CNENGLi-------rCp~C~ 394 (394)
.-.|..||+. --..|+.|++.--+-.+.| .+.-||.|..-.++ -||.|.
T Consensus 1117 ~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCH 1181 (1189)
T KOG2041|consen 1117 KVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCH 1181 (1189)
T ss_pred ceeeeecCCcCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCcccc
Confidence 4479999983 4578999999877766655 48889999877665 488884
No 364
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=25.30 E-value=80 Score=36.74 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCCcEEEECCEEEecchhHHhHHHcCCc
Q 039216 305 KAVPPRLFIKGRYIGGAAEVLTLHEQGKL 333 (394)
Q Consensus 305 ~~tVPqVFIdGkyIGGaDEL~eL~EsGeL 333 (394)
..++|-||..|..++|...+.....+|..
T Consensus 717 ~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~ 745 (1006)
T PRK12775 717 STNLPGVFAGGDIVTGGATVILAMGAGRR 745 (1006)
T ss_pred CCCCCCEEEecCcCCCccHHHHHHHHHHH
Confidence 46899999999998888777666666644
No 365
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.14 E-value=55 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=13.8
Q ss_pred CCCCCCCCCc------ceeeCCCCCCcc
Q 039216 346 DGPCDGCAGV------RFVLCFRCCGSH 367 (394)
Q Consensus 346 ~~~C~~CGG~------RfVpC~~C~GS~ 367 (394)
...|..||-. .+..|+.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 4578888754 225577777553
No 366
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.83 E-value=51 Score=35.06 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=18.5
Q ss_pred eeCCCCCCcceeeeCCC-ccccCcccccCcccc
Q 039216 358 VLCFRCCGSHKVVTGDG-LASQCQECNENGLII 389 (394)
Q Consensus 358 VpC~~C~GS~K~~~~~~-~~lRC~~CNENGLir 389 (394)
..|+.|+=|+.+-.-+. ..-.||.||+|-|..
T Consensus 228 ~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 228 MSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred eecCcCCccCchhhhcCCccccCCcccCCCccc
Confidence 35666654443322222 347899999987754
No 367
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.71 E-value=36 Score=40.10 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=25.5
Q ss_pred CCCCCCCCCc--------ceeeCCCCCCc-cee---eeCCCccccCcccc
Q 039216 346 DGPCDGCAGV--------RFVLCFRCCGS-HKV---VTGDGLASQCQECN 383 (394)
Q Consensus 346 ~~~C~~CGG~--------RfVpC~~C~GS-~K~---~~~~~~~lRC~~CN 383 (394)
...|.-||+. =||.|-.|.=. ||. |-++.+..-||.|+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCk 66 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccC
Confidence 4589999987 88999988533 332 33344566677775
No 368
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=24.45 E-value=47 Score=31.92 Aligned_cols=28 Identities=29% Similarity=0.675 Sum_probs=21.2
Q ss_pred CcceeeCCCCCCcceeeeCCCccccCccccc
Q 039216 354 GVRFVLCFRCCGSHKVVTGDGLASQCQECNE 384 (394)
Q Consensus 354 G~RfVpC~~C~GS~K~~~~~~~~lRC~~CNE 384 (394)
|+=|..|+.|.+-... .+..++||.|.-
T Consensus 146 GVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~ 173 (188)
T COG1096 146 GVIYARCSRCRAPLVK---KGNMLKCPNCGN 173 (188)
T ss_pred eEEEEEccCCCcceEE---cCcEEECCCCCC
Confidence 6777889999876443 556899999974
No 369
>PRK04011 peptide chain release factor 1; Provisional
Probab=24.14 E-value=54 Score=34.32 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=39.1
Q ss_pred CCEEEecchhHHhHHHcCCchhhh--ccCCCCCCCCCCCCCCCcce-----------eeCCCCCCccee
Q 039216 314 KGRYIGGAAEVLTLHEQGKLRPLF--DGIPIDRSDGPCDGCAGVRF-----------VLCFRCCGSHKV 369 (394)
Q Consensus 314 dGkyIGGaDEL~eL~EsGeL~kLL--k~~~~~~~~~~C~~CGG~Rf-----------VpC~~C~GS~K~ 369 (394)
+|..+-|.+++..+.+.|-.+.|| +.+.+......|..||-... -.|+.|++...+
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 362 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEI 362 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 377899999999999999999996 33443333446888876532 257777776433
No 370
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=18 Score=36.87 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=6.8
Q ss_pred CCCCCCCCCc
Q 039216 346 DGPCDGCAGV 355 (394)
Q Consensus 346 ~~~C~~CGG~ 355 (394)
.+.|..||+.
T Consensus 185 ~~~CPvCGS~ 194 (308)
T COG3058 185 RQYCPVCGSM 194 (308)
T ss_pred cccCCCcCCC
Confidence 4578888753
No 371
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=23.97 E-value=28 Score=34.51 Aligned_cols=17 Identities=53% Similarity=1.249 Sum_probs=0.0
Q ss_pred ccCccccc--------CccccCCCC
Q 039216 377 SQCQECNE--------NGLIICPYC 393 (394)
Q Consensus 377 lRC~~CNE--------NGLirCp~C 393 (394)
+.|.+||+ |.|.|||.|
T Consensus 171 V~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 171 VKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred EEecCccceeehhhHHHHHhcCCcc
No 372
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.96 E-value=1.4e+02 Score=29.79 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=34.2
Q ss_pred CCCcEEEEEecCCCCCCCCchHHHHHHHHHh--------C-CCcEEEEEcCCCHHHHHHHHHHhCCCCCCcEEEE
Q 039216 248 GDESVIFYTTTLRGIRKTFEDCSSVRFLLES--------F-KVIFFERDVSMHIEFREELWKVLDCKAVPPRLFI 313 (394)
Q Consensus 248 ge~kVVLYTTSLrgIRkTCpdCkrVR~ILes--------~-gV~yeErDVSmD~e~reELkellGg~~tVPqVFI 313 (394)
+..-+|.|.++| |+.|+.+...+.. . +|.+..+|++.+.-. . . .-..+|.+++
T Consensus 364 ~~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~-~i~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYAPW------CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-F-EVEGFPTIKF 425 (462)
T ss_pred CCeEEEEEECCC------CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-C-CccccCEEEE
Confidence 334566677775 9999988777653 1 577888888766411 1 2 2467897643
No 373
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.37 E-value=50 Score=31.89 Aligned_cols=37 Identities=27% Similarity=0.715 Sum_probs=25.4
Q ss_pred CCCCCCCCCCcceeeCCCCCCcceeeeCCC------ccccCcccccC
Q 039216 345 SDGPCDGCAGVRFVLCFRCCGSHKVVTGDG------LASQCQECNEN 385 (394)
Q Consensus 345 ~~~~C~~CGG~RfVpC~~C~GS~K~~~~~~------~~lRC~~CNEN 385 (394)
+...|.+||+.+--. |+|.-++ .+++ ..-||.+||-.
T Consensus 16 ~~k~C~~Cg~kr~f~---cSg~fRv-NAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 16 PAKRCNSCGVKRAFT---CSGKFRV-NAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred hhhhCcccCCcceee---ecCcEEE-cCCCcEEEEEEEEEeeccCCc
Confidence 345799999998765 5565444 4444 25699999864
No 374
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.02 E-value=46 Score=24.32 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=14.3
Q ss_pred eCCCCCCcceeee--CCCccccCcccccC
Q 039216 359 LCFRCCGSHKVVT--GDGLASQCQECNEN 385 (394)
Q Consensus 359 pC~~C~GS~K~~~--~~~~~lRC~~CNEN 385 (394)
.|..|+...-++. .......||.|...
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 3555554332321 12346779999863
No 375
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=22.66 E-value=40 Score=26.94 Aligned_cols=18 Identities=33% Similarity=0.964 Sum_probs=14.1
Q ss_pred cccCcccccCccc-cCCCC
Q 039216 376 ASQCQECNENGLI-ICPYC 393 (394)
Q Consensus 376 ~lRC~~CNENGLi-rCp~C 393 (394)
..+|+.|.+--|- .||.|
T Consensus 5 ~rkC~~cg~YTLke~Cp~C 23 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVC 23 (59)
T ss_pred hhcCcCCCceeecccCCCC
Confidence 4678888888887 88887
No 376
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.48 E-value=41 Score=33.68 Aligned_cols=17 Identities=41% Similarity=1.042 Sum_probs=0.0
Q ss_pred ccCccccc---------CccccCCCC
Q 039216 377 SQCQECNE---------NGLIICPYC 393 (394)
Q Consensus 377 lRC~~CNE---------NGLirCp~C 393 (394)
+.|.+|++ |+|.|||.|
T Consensus 158 v~CghC~~~Fl~~~~~~~tlARCPHC 183 (256)
T PF09788_consen 158 VICGHCSNTFLFNTLTSNTLARCPHC 183 (256)
T ss_pred EECCCCCCcEeccCCCCCccccCCCC
No 377
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.34 E-value=1.5e+02 Score=23.01 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=19.7
Q ss_pred CCchHHHHHHHHHh--------CCCcEEEEEcCCC-HHHHHHHHH
Q 039216 265 TFEDCSSVRFLLES--------FKVIFFERDVSMH-IEFREELWK 300 (394)
Q Consensus 265 TCpdCkrVR~ILes--------~gV~yeErDVSmD-~e~reELke 300 (394)
.|+.|......|.. .++.+..+.++.+ ..+++.+++
T Consensus 12 ~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 12 WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence 59999987776653 2344555555444 334444443
No 378
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=22.30 E-value=89 Score=35.83 Aligned_cols=46 Identities=33% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCCCCCccee------------------------------------------eCCCCCCcceeeeCCCc-cccC---ccc
Q 039216 349 CDGCAGVRFV------------------------------------------LCFRCCGSHKVVTGDGL-ASQC---QEC 382 (394)
Q Consensus 349 C~~CGG~RfV------------------------------------------pC~~C~GS~K~~~~~~~-~lRC---~~C 382 (394)
|..||+...+ .|+.|.+....-....+ |+.| |.|
T Consensus 595 CP~Cg~~~L~~k~gr~G~Fl~Cs~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~gr~G~Fl~Cs~yP~C 674 (860)
T PRK06319 595 CPKCHKGKLVKIWAKNRYFYGCSEYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHGRFGTFLGCENYPEC 674 (860)
T ss_pred cCCCCCcceeEEecCCCceeeccCCccccccCCcccccccccccccccccCCcCccCCCeeEEecCCCCceeeCCCCccc
Q ss_pred ccC-cc-------------ccCCCC-C
Q 039216 383 NEN-GL-------------IICPYC-C 394 (394)
Q Consensus 383 NEN-GL-------------irCp~C-~ 394 (394)
... .+ +.||.| |
T Consensus 675 k~~~~l~k~~~~~~~~~~~~~CP~~~C 701 (860)
T PRK06319 675 RGIINIHKKGEEGIEPEETVPCPAIGC 701 (860)
T ss_pred cccccCCcccccccCcccCCCCCCcCC
No 379
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=22.20 E-value=3.7e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=-0.056 Sum_probs=21.4
Q ss_pred CCchHHHHHHHH-------HhCCCcEEEEEcCCCHHHHHHHHH
Q 039216 265 TFEDCSSVRFLL-------ESFKVIFFERDVSMHIEFREELWK 300 (394)
Q Consensus 265 TCpdCkrVR~IL-------es~gV~yeErDVSmD~e~reELke 300 (394)
.|+.|.....-| +..++.+..+..+.....++.+..
T Consensus 37 ~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 37 WCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 499996544333 345677777777555545444443
No 380
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=65 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=21.0
Q ss_pred eeeCCCCCCcceeeeCCCccccCcccccC
Q 039216 357 FVLCFRCCGSHKVVTGDGLASQCQECNEN 385 (394)
Q Consensus 357 fVpC~~C~GS~K~~~~~~~~lRC~~CNEN 385 (394)
.+.|+.|+|. -++......+-|+.|+.-
T Consensus 8 iLaCP~~kg~-L~~~~~~~~L~c~~~~~a 35 (60)
T COG2835 8 ILACPVCKGP-LVYDEEKQELICPRCKLA 35 (60)
T ss_pred eeeccCcCCc-ceEeccCCEEEecccCce
Confidence 3689999997 555566678999999863
No 381
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.16 E-value=45 Score=32.29 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred chhhhccCCCCCCCCCCCCCCCc---ceeeCCCCCCc
Q 039216 333 LRPLFDGIPIDRSDGPCDGCAGV---RFVLCFRCCGS 366 (394)
Q Consensus 333 L~kLLk~~~~~~~~~~C~~CGG~---RfVpC~~C~GS 366 (394)
++++++..-...+...|..||-. .+..|+.|.+=
T Consensus 341 ~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~ 377 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRCRNCGFTARTLYWHCPSCKAW 377 (389)
T ss_pred HHHHHHHHHhCCCCEECCCCCCCCccceeECcCCCCc
Confidence 34444433334456789999876 45689999764
No 382
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.06 E-value=52 Score=24.94 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=12.4
Q ss_pred eCCCCCCcceeeeCCCccccCcccc
Q 039216 359 LCFRCCGSHKVVTGDGLASQCQECN 383 (394)
Q Consensus 359 pC~~C~GS~K~~~~~~~~lRC~~CN 383 (394)
-|+.|+.. .+..+.....|+.|.
T Consensus 22 fCP~Cg~~--~m~~~~~r~~C~~Cg 44 (50)
T PRK00432 22 FCPRCGSG--FMAEHLDRWHCGKCG 44 (50)
T ss_pred cCcCCCcc--hheccCCcEECCCcC
Confidence 45555433 344444566777774
No 383
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=22.02 E-value=42 Score=35.77 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=73.2
Q ss_pred hcCCCCCCCcEEEEEecCCCCCCCCchH-HHHHHHHHhCCCcEEEEEcCCCH---HH--HHHHHHHhC--------CCCC
Q 039216 242 LKCPPGGDESVIFYTTTLRGIRKTFEDC-SSVRFLLESFKVIFFERDVSMHI---EF--REELWKVLD--------CKAV 307 (394)
Q Consensus 242 ~~cppgge~kVVLYTTSLrgIRkTCpdC-krVR~ILes~gV~yeErDVSmD~---e~--reELkellG--------g~~t 307 (394)
-.|||-++++|.+= ||-.|+.= .++.+++.+..+.+..++.+... .+ ...|..+.. .-..
T Consensus 204 ~~i~P~t~~PVl~G------IRg~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl~~~~~l~d~~~~~~~~v~g~v~~ 277 (421)
T COG1571 204 PLIPPHTPNPVLYG------IRGAVPEVLLKAMSLIKRELVERSAIFETNQATDDHLVDKGKLNDIEDYSKYRVVGRVEA 277 (421)
T ss_pred cccCCCCCCCEEEE------EecCCHHHHHHHHHHHhccCcceEEEEeccchhhhhccccchhhhhhhccceEEEEEEec
Confidence 56889999988443 33355433 35555666677777777776542 11 112444321 1235
Q ss_pred CcEEEECCEEEecchh------HHhHHHcCCchhhhccCCCCCCCCCCCCCCCcc----------------e----eeCC
Q 039216 308 PPRLFIKGRYIGGAAE------VLTLHEQGKLRPLFDGIPIDRSDGPCDGCAGVR----------------F----VLCF 361 (394)
Q Consensus 308 VPqVFIdGkyIGGaDE------L~eL~EsGeL~kLLk~~~~~~~~~~C~~CGG~R----------------f----VpC~ 361 (394)
-|+...+|+.|.-..+ ..+...-.++..++..+.... .=..+|+.+ + -.|+
T Consensus 278 ~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD---~i~~~G~~~~~~~n~ek~~v~~l~~~~~~~p~Cp 354 (421)
T COG1571 278 EPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGD---EITVYGSVKPGTLNLEKFQVLKLARYERVNPVCP 354 (421)
T ss_pred ccEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCC---EEEEecCccccceeEEEEEEEEeeeeEEcCCCCC
Confidence 6888888876643311 222333445555544433221 111222221 1 2799
Q ss_pred CCCCcceeeeCCCccccCccccc
Q 039216 362 RCCGSHKVVTGDGLASQCQECNE 384 (394)
Q Consensus 362 ~C~GS~K~~~~~~~~lRC~~CNE 384 (394)
.|+|+.+|.-.+ -.||+.|..
T Consensus 355 ~Cg~~m~S~G~~--g~rC~kCg~ 375 (421)
T COG1571 355 RCGGRMKSAGRN--GFRCKKCGT 375 (421)
T ss_pred ccCCchhhcCCC--Ccccccccc
Confidence 999999997554 678999964
No 384
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.80 E-value=3.5e+02 Score=24.41 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=17.0
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHh
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLES 278 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes 278 (394)
.|+||+.+. .|+.|++..-.|..
T Consensus 27 ~vlL~FwAs-----WCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGAV-----VSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEECC-----CChhHHHHHHHHHH
Confidence 466776663 59999998877754
No 385
>PRK14973 DNA topoisomerase I; Provisional
Probab=21.64 E-value=85 Score=36.54 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCCCCCC---------cceeeCCC---CCCcceeeeCCCcccc-----Ccccc-------cCcc----ccCCCC
Q 039216 347 GPCDGCAG---------VRFVLCFR---CCGSHKVVTGDGLASQ-----CQECN-------ENGL----IICPYC 393 (394)
Q Consensus 347 ~~C~~CGG---------~RfVpC~~---C~GS~K~~~~~~~~lR-----C~~CN-------ENGL----irCp~C 393 (394)
+.|..||+ -.|+-|+. |.-.........+... ||.|. .+|- +-||.|
T Consensus 589 ~~CP~CG~~l~ik~~k~gkFigCS~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p~~~~~r~Gr~g~fl~CP~C 663 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQFIGCSGYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLNHVRLIRKGARPWDIGCPLC 663 (936)
T ss_pred ccCCcccccceeecccCceeEECCCCCCCCccccCCccccccCCCCCCCCCCCCCCceEEeecCCCcccccCccc
No 386
>PRK07219 DNA topoisomerase I; Validated
Probab=21.53 E-value=85 Score=35.70 Aligned_cols=17 Identities=47% Similarity=0.907 Sum_probs=12.4
Q ss_pred CCCCCCCCCc----------ceeeCCC
Q 039216 346 DGPCDGCAGV----------RFVLCFR 362 (394)
Q Consensus 346 ~~~C~~CGG~----------RfVpC~~ 362 (394)
...|..||+. +|+-|+.
T Consensus 602 ~~~CP~Cg~~l~~r~~~~g~~F~gCs~ 628 (822)
T PRK07219 602 IGKCPECGGDLIIIRTDKGSRFVGCSG 628 (822)
T ss_pred cCcCCCCCCcceeeeccCCceeeecCC
Confidence 3579999862 6788876
No 387
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=21.33 E-value=2.4e+02 Score=27.00 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=46.2
Q ss_pred hcCCCCCCCcEEEEEecCCCCCCCCch--HHHHHHHHHhCCCcEEEEEcCCCHHHHHHHHHHhCC
Q 039216 242 LKCPPGGDESVIFYTTTLRGIRKTFED--CSSVRFLLESFKVIFFERDVSMHIEFREELWKVLDC 304 (394)
Q Consensus 242 ~~cppgge~kVVLYTTSLrgIRkTCpd--CkrVR~ILes~gV~yeErDVSmD~e~reELkellGg 304 (394)
..+|.-+...|++.+.|+. ||.. =..+-..|...+|++..+-++..-..-+++.+.+||
T Consensus 94 ~~~p~~~srEIlvi~gSl~----t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~G 154 (193)
T PF04056_consen 94 KHMPSHGSREILVIFGSLT----TCDPGDIHETIESLKKENIRVSVISLAAEVYICKKICKETGG 154 (193)
T ss_pred hhCccccceEEEEEEeecc----cCCchhHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhCC
Confidence 4567777889999889986 4532 347777889999999999998776677888888874
No 388
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.26 E-value=74 Score=29.12 Aligned_cols=35 Identities=14% Similarity=0.391 Sum_probs=25.8
Q ss_pred CcceeeCCCCCCcceeeeCCCccccCcccccCcccc
Q 039216 354 GVRFVLCFRCCGSHKVVTGDGLASQCQECNENGLII 389 (394)
Q Consensus 354 G~RfVpC~~C~GS~K~~~~~~~~lRC~~CNENGLir 389 (394)
|.|...|..|+-..-... -..-..||.|+-+.-.|
T Consensus 109 g~G~l~C~~Cg~~~~~~~-~~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTH-PERLPPCPKCGHTEFTR 143 (146)
T ss_pred cCceEecccCCCEEEecC-CCcCCCCCCCCCCeeee
Confidence 788899999987654443 24578899998876655
No 389
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.00 E-value=59 Score=36.27 Aligned_cols=38 Identities=24% Similarity=0.547 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCc-------ceeeCCCCCCcceeeeCCCccccCcccccCccc
Q 039216 344 RSDGPCDGCAGV-------RFVLCFRCCGSHKVVTGDGLASQCQECNENGLI 388 (394)
Q Consensus 344 ~~~~~C~~CGG~-------RfVpC~~C~GS~K~~~~~~~~lRC~~CNENGLi 388 (394)
+....|..|.+. +.+.|.+|+-+. .-.+||.|...-|.
T Consensus 390 g~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-------~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 390 RTPARCRHCTGPLGLPSAGGTPRCRWCGRAA-------PDWRCPRCGSDRLR 434 (665)
T ss_pred cCeeECCCCCCceeEecCCCeeECCCCcCCC-------cCccCCCCcCCcce
Confidence 345689999854 457899998542 14699999876553
No 390
>PLN02400 cellulose synthase
Probab=20.85 E-value=61 Score=38.31 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=25.5
Q ss_pred CCCCCCCCCc--------ceeeCCCCCCc-cee---eeCCCccccCcccc
Q 039216 346 DGPCDGCAGV--------RFVLCFRCCGS-HKV---VTGDGLASQCQECN 383 (394)
Q Consensus 346 ~~~C~~CGG~--------RfVpC~~C~GS-~K~---~~~~~~~lRC~~CN 383 (394)
...|.-||+. =||.|-.|.=. ||. |-++.+..-||.|+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCk 85 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCK 85 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccC
Confidence 4589999987 89999999533 332 33334566666665
No 391
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=20.69 E-value=93 Score=27.06 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=18.7
Q ss_pred cHHHHHhhhhhHHHHH----HHHHhhhhcccCCCCCCCCCC
Q 039216 77 DVEELMKDLEDEEEEE----EEEEAEEMELDDGINDKENIG 113 (394)
Q Consensus 77 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ken~~ 113 (394)
.|+||.--|.+-|.+. ..+|+++-+++|..+|.-||.
T Consensus 41 ~vsel~~~lVqqe~~~r~aa~p~E~ldg~deddaede~n~~ 81 (96)
T PF15387_consen 41 LVSELFGPLVQQEAQDRVAAAPDEALDGDDEDDAEDENNID 81 (96)
T ss_pred HHHHHHHHHHHHhhccccccCchhhccCccccccccccCcc
Confidence 4666666666655443 234444444444444555543
No 392
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.68 E-value=2.9e+02 Score=26.13 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEcCCC--HHHHHHHH----HH--------hCC----------CCCCcEE--EECCEEE
Q 039216 265 TFEDCSSVRFLLESFKVIFFERDVSMH--IEFREELW----KV--------LDC----------KAVPPRL--FIKGRYI 318 (394)
Q Consensus 265 TCpdCkrVR~ILes~gV~yeErDVSmD--~e~reELk----el--------lGg----------~~tVPqV--FIdGkyI 318 (394)
..+.-+.+-.+|+.+||+|+.+=||.| ++...++. ++ .|+ ..++|.| -|..+.+
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L 93 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKAL 93 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCccccc
Confidence 567778889999999999999999999 33333332 21 021 3567875 4677888
Q ss_pred ecchhHH
Q 039216 319 GGAAEVL 325 (394)
Q Consensus 319 GGaDEL~ 325 (394)
+|.|.|.
T Consensus 94 ~GlDSL~ 100 (162)
T COG0041 94 SGLDSLL 100 (162)
T ss_pred cchHHHH
Confidence 8888764
No 393
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.44 E-value=1.1e+02 Score=29.31 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=39.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCCchHHHHHHHHHhC---------CCcEEEEEcCCCHH------------HHHHHHHHhC
Q 039216 245 PPGGDESVIFYTTTLRGIRKTFEDCSSVRFLLESF---------KVIFFERDVSMHIE------------FREELWKVLD 303 (394)
Q Consensus 245 ppgge~kVVLYTTSLrgIRkTCpdCkrVR~ILes~---------gV~yeErDVSmD~e------------~reELkellG 303 (394)
.|.+.--++||.+. +|++|.+.+.-+... ++.+.+++++.... --+||.+..+
T Consensus 39 ~~~~Kylllmfes~------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 39 SPNDKYLLLMFESN------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred CccCcEEEEEEcCC------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 45555667777777 899999877654321 23455666654311 1357777775
Q ss_pred CCCCCcE-EEECCE
Q 039216 304 CKAVPPR-LFIKGR 316 (394)
Q Consensus 304 g~~tVPq-VFIdGk 316 (394)
.++.|. ||.++.
T Consensus 113 -vrstPtfvFfdk~ 125 (182)
T COG2143 113 -VRSTPTFVFFDKT 125 (182)
T ss_pred -cccCceEEEEcCC
Confidence 556665 566664
No 394
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.32 E-value=92 Score=24.57 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=16.5
Q ss_pred EEECCEEEecchhH-------HhHHHcCCchh
Q 039216 311 LFIKGRYIGGAAEV-------LTLHEQGKLRP 335 (394)
Q Consensus 311 VFIdGkyIGGaDEL-------~eL~EsGeL~k 335 (394)
||+||.+||=.++- +.|-.+|.+..
T Consensus 1 VFlNG~~iG~~~~p~~l~~~lr~~RR~g~i~~ 32 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVKTLRNLRRSGKISK 32 (63)
T ss_dssp EEETTEEEEEESSHHHHHHHHHHHHHTTSS-T
T ss_pred CEECCEEEEEEcCHHHHHHHHHHHhhccCCcc
Confidence 79999999987653 44444555544
No 395
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.32 E-value=3e+02 Score=30.91 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=53.1
Q ss_pred cEEEEEecCCCCCCCCchHHHHHHHHHhCCCcEEEEEcCC----CHHHHHHHHHHhCCCCCCcEEEECCEEEecchh--H
Q 039216 251 SVIFYTTTLRGIRKTFEDCSSVRFLLESFKVIFFERDVSM----HIEFREELWKVLDCKAVPPRLFIKGRYIGGAAE--V 324 (394)
Q Consensus 251 kVVLYTTSLrgIRkTCpdCkrVR~ILes~gV~yeErDVSm----D~e~reELkellGg~~tVPqVFIdGkyIGGaDE--L 324 (394)
.|+|.+++. ....|.++-..|+..||..+.+|+.. |.+....+.+ ..-..|.+....+||+-. .
T Consensus 546 dvtIva~G~-----~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k-----~~~~vVt~Ee~~~GG~Gs~Va 615 (641)
T PLN02234 546 RVALLGYGS-----AVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAK-----SHEVLITVEEGSIGGFGSHVV 615 (641)
T ss_pred CEEEEEecH-----HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHH-----hCCEEEEECCCCCCcHHHHHH
Confidence 566776664 47789999999999999999999963 3443333322 122345566667799844 4
Q ss_pred HhHHHcCCchhhhcc
Q 039216 325 LTLHEQGKLRPLFDG 339 (394)
Q Consensus 325 ~eL~EsGeL~kLLk~ 339 (394)
..|.++|-++..|+-
T Consensus 616 ~~l~e~~~~~~~~~~ 630 (641)
T PLN02234 616 QFLALDGLLDGKLKV 630 (641)
T ss_pred HHHHHcCCCCCCceE
Confidence 556677777776653
No 396
>PRK11032 hypothetical protein; Provisional
Probab=20.20 E-value=61 Score=30.27 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCCCCCccee-------eCCCCCCccee
Q 039216 348 PCDGCAGVRFV-------LCFRCCGSHKV 369 (394)
Q Consensus 348 ~C~~CGG~RfV-------pC~~C~GS~K~ 369 (394)
.|..||-...+ ||+.|++..+.
T Consensus 126 vC~~Cg~~~~~~~p~~i~pCp~C~~~~F~ 154 (160)
T PRK11032 126 VCEKCHHHLAFYTPEVLPLCPKCGHDQFQ 154 (160)
T ss_pred EecCCCCEEEecCCCcCCCCCCCCCCeee
No 397
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.19 E-value=2e+02 Score=30.97 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=48.3
Q ss_pred CCCCchHHHHHHHHHhC--CCc-EEEEEcCCCH-HHHHHHHHHhC--CC--CCCcEEE---E----CCEEEecchhHHhH
Q 039216 263 RKTFEDCSSVRFLLESF--KVI-FFERDVSMHI-EFREELWKVLD--CK--AVPPRLF---I----KGRYIGGAAEVLTL 327 (394)
Q Consensus 263 RkTCpdCkrVR~ILes~--gV~-yeErDVSmD~-e~reELkellG--g~--~tVPqVF---I----dGkyIGGaDEL~eL 327 (394)
|..|||=.++.-+-..+ +++ |...-|..++ +|.++|..+.- +| ..-|.|+ + .|..|||+.+++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 45799988877665543 333 8888999995 46677777651 23 5679986 4 78899999999887
Q ss_pred HH
Q 039216 328 HE 329 (394)
Q Consensus 328 ~E 329 (394)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 54
Done!