BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039218
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQZ9|PITH1_ARATH PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana
GN=At3g04780 PE=1 SV=2
Length = 176
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 114/134 (85%), Positives = 123/134 (91%)
Query: 1 GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
GYREDEGL LESDADEQLLIY+PF QV+KLHS +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43 GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102
Query: 61 NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+TV
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTV 162
Query: 121 ETTDMKGLKKIEDN 134
ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176
>sp|O43396|TXNL1_HUMAN Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3
Length = 289
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
+LESD DEQLLI + F Q VKL+S+ +GP+ +GPK VK+F N M F P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215
Query: 67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
LT D++K +V L++VKFQNV S+TIF++ NQ + E T+++ GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 275
Query: 126 KGLKKI 131
K++
Sbjct: 276 NDFKRV 281
>sp|Q920J4|TXNL1_RAT Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3
Length = 289
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
+LESD DEQLLI + F Q VKL+S+ +GP+ +GPK VK+F N M F P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215
Query: 67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
LT D++K +V L++VKFQNV S+T+F++ NQ + E T+++ GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNM 275
Query: 126 KGLKKI 131
K++
Sbjct: 276 NDFKRV 281
>sp|Q8CDN6|TXNL1_MOUSE Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3
Length = 289
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
+LESD DEQLLI + F Q VKL+S+ +GP+ +GPK VK+F N M F P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215
Query: 67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
LT D++K +V L++VKFQNV S+T+F++ NQ + E T+++ GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNM 275
Query: 126 KGLKKI 131
K++
Sbjct: 276 NDFKRV 281
>sp|Q9USR1|TXL1_SCHPO Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=txl1 PE=4 SV=1
Length = 290
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 6/138 (4%)
Query: 1 GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIV---VKGPEEEGPKTVKLFSNR-EHMG 56
+ + +LESD DEQL+IY+PF +VVK+HSI VKG PKT+KL+ N+ ++
Sbjct: 152 AFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLS 211
Query: 57 FSNVNDFPPSDTA--VLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIA 114
F + F P+ ++ + + + L+FVKFQ V SL IFI N + E TK++++
Sbjct: 212 FEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLE 271
Query: 115 LFGTTVETTDMKGLKKIE 132
LFG V + L+K+E
Sbjct: 272 LFGEPVGDSSKGKLQKVE 289
>sp|Q9VK68|PITH1_DROME PITH domain-containing protein CG6153 OS=Drosophila melanogaster
GN=CG6153 PE=2 SV=1
Length = 211
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
R+D Y+ESDADE+LL +PFT +KL I++ G ++ P VK+F NR M F +
Sbjct: 61 RQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDAR 120
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
P + LT D K V F +V L+++ N + ++T++ I L G E
Sbjct: 121 AKPDQEFQ-LTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGE-DITRIYYIGLRGEFTE 178
Query: 122 T 122
Sbjct: 179 A 179
>sp|Q6NYX8|PITH1_DANRE PITH domain-containing protein 1 OS=Danio rerio GN=pithd1 PE=2 SV=1
Length = 210
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
R D ++ESDADE+LL +PFT VKL I++ G ++E P ++LF N M F + +
Sbjct: 60 RTDRNKFVESDADEELLFNIPFTGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTS 119
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
P L D K +F NV L+I + N +E T+V I L G E
Sbjct: 120 R-EPEQAFRLNRDPRAELEYPTKIARFSNVEHLSIHVSRNFG-AESTRVYYIGLRGEYTE 177
Query: 122 T 122
Sbjct: 178 A 178
>sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1
SV=1
Length = 211
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
R D ++ESDADE+LL +PFT VKL I++ G +++ P ++L+ N M F +
Sbjct: 61 RTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDT- 119
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
+ P T L D K +F NV L+I I N ++ TKV I L G E
Sbjct: 120 EREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFG-ADTTKVFYIGLRGEWTE 178
>sp|Q9P7A1|PITH1_SCHPO PITH domain-containing protein P35G2.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.02 PE=3 SV=1
Length = 207
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVK-GPEEEGPKTVKLFSNREHMGFSNVN 61
R D+ +ESDAD+QLL +PF L SI+V+ P E P + LF NR + F +
Sbjct: 54 RYDDTDIVESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIG 113
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVK---FQNVRSLTIFIEDNQSDSEVTKVNKIALFGT 118
D ++T P +G + VK +QN+++L IF + + T++ I L G+
Sbjct: 114 DVQATETFEF-PLTFEGSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRGS 172
Query: 119 TV 120
V
Sbjct: 173 FV 174
>sp|Q8BWR2|PITH1_MOUSE PITH domain-containing protein 1 OS=Mus musculus GN=Pithd1 PE=2
SV=1
Length = 211
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
R D ++ESDADE+LL +PFT VKL +++ G +++ P ++L+ N M F +
Sbjct: 61 RTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDT- 119
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
+ P T L D K +F NV L+I I N ++ TK+ I L G E
Sbjct: 120 EREPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKNFG-ADTTKIFYIGLRGEWTE 178
>sp|Q95ZI6|PITH1_CAEEL PITH domain-containing protein ZK353.9 OS=Caenorhabditis elegans
GN=ZK353.9 PE=3 SV=1
Length = 208
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREHMGFSNVN 61
R+D Y+ESD D +LL +PFT V+L + + G E+ P ++LF +RE M F + +
Sbjct: 58 RDDRLEYVESDCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCS 117
Query: 62 DFPPSDTAV---LTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFG 117
+D + P L P LK KF N+ +L+I ++ N + E TK+ I L G
Sbjct: 118 --IEADQEIDLKQDPQGLVDYP--LKASKFGNIHNLSILVDANFGEDE-TKIYYIGLRG 171
>sp|Q6DJI5|PITH1_XENLA PITH domain-containing protein 1 OS=Xenopus laevis GN=pithd1 PE=2
SV=1
Length = 209
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEE-GPKTVKLFSNREHMGFSNVN 61
R D ++ESD DE+LL +PFT VKL IV+ G + + P ++LF N HM F +
Sbjct: 59 RNDRTRFVESDDDEELLFNIPFTGNVKLKGIVLIGEDSDTHPAELRLFKNVPHMSFDDTG 118
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
T L D K +F NV L+I I N +E TK+ I L G E
Sbjct: 119 R-EADQTFSLNIDVNGNLEYPTKIARFSNVSHLSIHISKNFG-AENTKIYYIGLRGEWTE 176
Query: 122 T 122
Sbjct: 177 A 177
>sp|Q29L80|PITH1_DROPS PITH domain-containing protein GA19395 OS=Drosophila pseudoobscura
pseudoobscura GN=GA19395 PE=3 SV=1
Length = 211
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
R+D +++SDADE+LL +PFT +KL I++ G ++ P VK+F NR M F +
Sbjct: 61 RQDMSKFVQSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK 120
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
LT D K V F +V LT++ N D + T++ I L G E
Sbjct: 121 -VKVDQEFELTRDPRGEIEYSPKVVNFSSVHHLTLYFPSNFGDDK-TRIYYIGLRGEFSE 178
Query: 122 T 122
Sbjct: 179 A 179
>sp|Q54Z24|PITH1_DICDI PITH domain-containing protein 1 OS=Dictyostelium discoideum
GN=DDB_G0277951 PE=3 SV=1
Length = 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 3 REDEGLYLESDADEQLLIYLPFTQVVKL-HSIVVKGPEEEGPKTVKLFSNREHMGFSNVN 61
R D ++ES DE+L+I +PF V ++ I++ G P +K + N ++ F N+N
Sbjct: 52 RHDLKHFVESCDDEELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNIN 111
Query: 62 DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFG 117
F + L D K KF N+ LT++ N S TK+ IAL G
Sbjct: 112 SFACTQEWNLHEDFEGQIGYSTKPTKFNNINHLTLYFPSNFG-SPTTKIYFIALKG 166
>sp|Q7VRP7|RPOB_BLOFL DNA-directed RNA polymerase subunit beta OS=Blochmannia floridanus
GN=rpoB PE=3 SV=1
Length = 1342
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 66 SDTAVLTPDNL-KGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTD 124
D VLTP +L KP+ +F N L+ F++ N SE+T +I+ G T +
Sbjct: 483 GDLDVLTPQDLINAKPISAAVREFFNSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 542
Query: 125 MKGLKKIEDNH 135
G ++ D H
Sbjct: 543 RAGF-EVRDVH 552
>sp|Q9P6C8|ADH1_NEUCR Alcohol dehydrogenase 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=adh-1
PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 24 FTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVL 83
+ + LH+I + G EE+G K + + ++ F+ D +D TPD L V+L
Sbjct: 193 YANAMGLHAIAIDGGEEKG-KNCRELGAQAYVDFTTTKDL-VADVKAATPDGLGPHAVIL 250
>sp|Q8EK74|RPOB_SHEON DNA-directed RNA polymerase subunit beta OS=Shewanella oneidensis
(strain MR-1) GN=rpoB PE=3 SV=1
Length = 1345
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A1S211|RPOB_SHEAM DNA-directed RNA polymerase subunit beta OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=rpoB PE=3 SV=1
Length = 1342
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A0KRL7|RPOB_SHESA DNA-directed RNA polymerase subunit beta OS=Shewanella sp. (strain
ANA-3) GN=rpoB PE=3 SV=1
Length = 1345
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q12SW6|RPOB_SHEDO DNA-directed RNA polymerase subunit beta OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A6WHS1|RPOB_SHEB8 DNA-directed RNA polymerase subunit beta OS=Shewanella baltica
(strain OS185) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A3DB95|RPOB_SHEB5 DNA-directed RNA polymerase subunit beta OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|B8EBL2|RPOB_SHEB2 DNA-directed RNA polymerase subunit beta OS=Shewanella baltica
(strain OS223) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A3Q975|RPOB_SHELP DNA-directed RNA polymerase subunit beta OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A1REA7|RPOB_SHESW DNA-directed RNA polymerase subunit beta OS=Shewanella sp. (strain
W3-18-1) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q0I0B2|RPOB_SHESR DNA-directed RNA polymerase subunit beta OS=Shewanella sp. (strain
MR-7) GN=rpoB PE=3 SV=1
Length = 1345
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q0HNU4|RPOB_SHESM DNA-directed RNA polymerase subunit beta OS=Shewanella sp. (strain
MR-4) GN=rpoB PE=3 SV=2
Length = 1345
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A4YBZ0|RPOB_SHEPC DNA-directed RNA polymerase subunit beta OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q089R1|RPOB_SHEFN DNA-directed RNA polymerase subunit beta OS=Shewanella
frigidimarina (strain NCIMB 400) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|B8CNC5|RPOB_SHEPW DNA-directed RNA polymerase subunit beta OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|B1KMZ0|RPOB_SHEWM DNA-directed RNA polymerase subunit beta OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q9KW14|RPOB_SHEVI DNA-directed RNA polymerase subunit beta OS=Shewanella violacea
GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A8GYW9|RPOB_SHEPA DNA-directed RNA polymerase subunit beta OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|A8G1F5|RPOB_SHESH DNA-directed RNA polymerase subunit beta OS=Shewanella sediminis
(strain HAW-EB3) GN=rpoB PE=3 SV=1
Length = 1343
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 52 REHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVN 111
RE + ++N+ P D + KP+ +F L+ F++ N SEVT
Sbjct: 477 RERLSLGDLNELMPQDL-------INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 529
Query: 112 KIALFGTTVETTDMKGLKKIEDNH 135
+I+ G T + G ++ D H
Sbjct: 530 RISALGPGGLTRERAGF-EVRDVH 552
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 65 PSDTAVLTP---DNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTK 109
P +LTP +L+ P VLK+ K + V S F+E N + E+ +
Sbjct: 1077 PEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQE 1124
>sp|Q492B9|RPOB_BLOPB DNA-directed RNA polymerase subunit beta OS=Blochmannia
pennsylvanicus (strain BPEN) GN=rpoB PE=3 SV=1
Length = 1341
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 66 SDTAVLTPDNL-KGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTD 124
D VLTP +L KP+ +F L+ F++ N SE+T +I+ G T +
Sbjct: 482 GDLDVLTPQDLINAKPISAAVREFFTSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541
Query: 125 MKGLKKIEDNH 135
G ++ D H
Sbjct: 542 RAGF-EVRDVH 551
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,202,920
Number of Sequences: 539616
Number of extensions: 1902714
Number of successful extensions: 3215
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 3186
Number of HSP's gapped (non-prelim): 62
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)