Query 039218
Match_columns 135
No_of_seqs 105 out of 385
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wwy_A Thioredoxin-like protei 100.0 5.4E-53 1.8E-57 325.7 10.2 130 3-132 35-168 (171)
2 1xoy_A Hypothetical protein AT 100.0 3.1E-50 1E-54 307.7 10.2 118 2-119 44-161 (161)
3 4dxt_A SUN domain-containing p 96.6 0.03 1E-06 43.2 11.4 90 19-120 91-197 (198)
4 1jhj_A APC10; beta sandwich, j 95.7 0.044 1.5E-06 41.6 7.7 108 6-120 49-162 (171)
5 1gqp_A DOC1/APC10; cell cycle, 94.9 0.055 1.9E-06 42.8 6.3 108 7-121 81-196 (221)
6 2yc2_A IFT25, intraflagellar t 88.7 1.1 3.8E-05 31.8 6.1 84 20-118 51-138 (139)
7 1tvg_A LOC51668 protein; cell 81.2 13 0.00045 26.9 10.1 97 9-122 49-150 (153)
8 2jda_A Yecbm32; hypothetical p 46.6 61 0.0021 21.5 7.3 94 18-121 44-139 (145)
9 3f2z_A Uncharacterized protein 39.1 92 0.0031 21.4 9.8 93 17-121 54-151 (159)
10 2j1a_A Hyaluronidase, CBM32; p 38.8 82 0.0028 20.7 7.3 42 17-58 52-96 (150)
11 1w8o_A Bacterial sialidase; 3D 28.8 2.5E+02 0.0086 23.3 9.2 86 18-118 506-600 (601)
12 4a41_A GH89_CBM32-5, alpha-N-a 24.2 1.8E+02 0.0062 20.1 6.7 44 17-60 70-116 (161)
13 3ggl_A Putative chitobiase; X- 21.9 2E+02 0.007 19.9 10.7 93 17-121 64-161 (169)
14 3pry_A Heat shock protein HSP 21.8 1.3E+02 0.0044 24.0 4.9 40 14-53 31-78 (268)
No 1
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=100.00 E-value=5.4e-53 Score=325.70 Aligned_cols=130 Identities=41% Similarity=0.638 Sum_probs=121.4
Q ss_pred ccC-CCceeecCCCcceEEEecccCceeEEEEEEeCC-CCCCceEEEEeecC-CCCCccCCCCCCCceEEEecCCCC-CC
Q 039218 3 RED-EGLYLESDADEQLLIYLPFTQVVKLHSIVVKGP-EEEGPKTVKLFSNR-EHMGFSNVNDFPPSDTAVLTPDNL-KG 78 (135)
Q Consensus 3 R~d-~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~-~~~~P~~iKlf~N~-~~ldFd~~~~~~p~Q~~~l~~~~~-~~ 78 (135)
|++ ...+|+||+||||||||||+++||||||+|+++ ++++|++||||+|+ ++||||+|++.+|+|+|+|+++++ ++
T Consensus 35 ~l~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~~Pk~iKlf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g 114 (171)
T 1wwy_A 35 CLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKED 114 (171)
T ss_dssp TSSSSSCCBCCSSCSCCEEEEEEEEEEEEEEEEECCCSSSCCBCEEEEEESCSSCCCTTHHHHSCCSSCEECCTTTSSTT
T ss_pred hhccCCCcCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCCcEEEEeecCCCCcChhhhccCCCceEEEcCCcccCCC
Confidence 344 457999999999999999999999999999996 56999999999999 689999999999999999998876 56
Q ss_pred eEEEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEeccccCCCCceecc
Q 039218 79 KPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIE 132 (135)
Q Consensus 79 ~~~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~~t~m~~l~k~~ 132 (135)
.+||||+||||||+||||||++||+|+|+|+|+||+|+|+++++|||++|||+.
T Consensus 115 ~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~~~~~~m~~~k~~~ 168 (171)
T 1wwy_A 115 GIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKSGP 168 (171)
T ss_dssp CCEECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEESSCCSCCCCCCCC
T ss_pred cEEEccceEEcccCEEEEEEecCCCCCccEEEEEEEEEeEecCcccHHHcccCC
Confidence 799999999999999999999999888999999999999999999999999985
No 2
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=100.00 E-value=3.1e-50 Score=307.65 Aligned_cols=118 Identities=84% Similarity=1.235 Sum_probs=111.8
Q ss_pred cccCCCceeecCCCcceEEEecccCceeEEEEEEeCCCCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218 2 YREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV 81 (135)
Q Consensus 2 ~R~d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~ 81 (135)
+|.++..+++||+||||||||||+++||||||+|+++++++|++||||+|||+|||++|++.+|+|+|+|+++++++.+|
T Consensus 44 ~r~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~Pk~iKlf~N~~~ldFd~a~~~~p~Q~~el~~~~~~g~~~ 123 (161)
T 1xoy_A 44 YREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPV 123 (161)
T ss_dssp SCCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCTTTSEEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCE
T ss_pred hhccCCccCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCcEEEEeeCCCCCChhhhccCCCceEEECCCCcCCCcEE
Confidence 68888899999999999999999999999999999975599999999999999999999999999999999886555899
Q ss_pred EccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEe
Q 039218 82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119 (135)
Q Consensus 82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~ 119 (135)
|||++|||||+||||||++||+|+|+|+|+||+|+|++
T Consensus 124 ~lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~G~~ 161 (161)
T 1xoy_A 124 VLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161 (161)
T ss_dssp ECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred eccceeEcccCEEEEEEecCCCCCccEEEEEEEEEecC
Confidence 99999999999999999999988899999999999985
No 3
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=96.65 E-value=0.03 Score=43.22 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=62.7
Q ss_pred EEEecccCceeEEEEEEeC-C-----C---CCCceEEEEeecCCCC--------CccCCCCCCCceEEEecCCCCCCeEE
Q 039218 19 LIYLPFTQVVKLHSIVVKG-P-----E---EEGPKTVKLFSNREHM--------GFSNVNDFPPSDTAVLTPDNLKGKPV 81 (135)
Q Consensus 19 ii~IpF~~~Vkl~sI~i~~-~-----~---~~~P~~iKlf~N~~~l--------dFd~~~~~~p~Q~~~l~~~~~~~~~~ 81 (135)
-+-|-+..++.+.+|.|-- + + ++|||.+.||.-...- .|.=-.+..+.|+|.|....
T Consensus 91 ~l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~------ 164 (198)
T 4dxt_A 91 FAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPT------ 164 (198)
T ss_dssp EEEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCC------
T ss_pred eeeeecCCeEEEEEEEEEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCC------
Confidence 3456777999999999965 2 1 3899999999875421 11110112366777774321
Q ss_pred EccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEec
Q 039218 82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120 (135)
Q Consensus 82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~ 120 (135)
=.-++.+.|-|.+|||..+.|-||++.+.|++.
T Consensus 165 ------~~~~~~V~l~i~SN~G~~~~TClYr~RVhG~~~ 197 (198)
T 4dxt_A 165 ------MATYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197 (198)
T ss_dssp ------SCCEEEEEEEECCBSSCSSEEEECEEEEEEECC
T ss_pred ------CcceeEEEEEEECCCCCCCcEEEEEEEEcCEeC
Confidence 124678888999999666899999999999974
No 4
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=95.68 E-value=0.044 Score=41.59 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218 6 EGLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV 81 (135)
Q Consensus 6 ~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~ 81 (135)
.+.|-+||.-..=.|.|-|...|.|+.|.|.. + +...|+.|.+++=.. +.++ ....++++.+ ..|-..+
T Consensus 49 ~~TyWqSdg~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~---~~dL---~ei~~v~l~~-p~Gwv~i 121 (171)
T 1jhj_A 49 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNN---FHNL---QEIRQLELVE-PSGWIHV 121 (171)
T ss_dssp TTCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS---TTSC---EEEEEEECSS-CEEEEEE
T ss_pred CCeeEccCCCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCC---cccc---eeEEEEEccC-CCEEEEE
Confidence 44688999777778999999999999999977 2 348999999997533 3333 2245566643 2333556
Q ss_pred Ecccc--ccccccEEEEEEeCCCCCCceEEEEEEEEEeEec
Q 039218 82 VLKFV--KFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120 (135)
Q Consensus 82 ~Lr~~--KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~ 120 (135)
+++-. +-..+.-|.|.|..|+.++--|+|..|.++|...
T Consensus 122 ~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~~ 162 (171)
T 1jhj_A 122 PLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVE 162 (171)
T ss_dssp ECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC-
T ss_pred EeccCCCCceeEEEEEEEEeccCCCCCccEEEEEEEEecCC
Confidence 65321 2334458999999998666669999999999843
No 5
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=94.91 E-value=0.055 Score=42.78 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=74.9
Q ss_pred CceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEE
Q 039218 7 GLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVV 82 (135)
Q Consensus 7 ~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~ 82 (135)
+.|-|||.-.-=.|+|-|...|.|+.|.|-- . +...|+.|.+.+=.. +.++. ...++++.+ ..|-+.++
T Consensus 81 ~TyWQSDG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~---~~dL~---e~~~v~l~~-p~GWv~i~ 153 (221)
T 1gqp_A 81 DTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHS---PSDAR---FYKMLEVRN-VNGWVALR 153 (221)
T ss_dssp TCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS---TTTCE---EEEEEEEEE-CEEEEEEC
T ss_pred cceeccCCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeCC---cCcce---EEEEEEecC-CCEEEEEE
Confidence 4688999888889999999999999999977 2 348999999988633 22222 234555542 22224455
Q ss_pred cccc----ccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218 83 LKFV----KFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121 (135)
Q Consensus 83 Lr~~----KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~ 121 (135)
|.-. .+..+.-|.|.|..|+.++--|+|..|.++|-..+
T Consensus 154 l~d~~~~~~~l~~~~IQI~I~~nhqnGrDThIRqIkI~Gp~~~ 196 (221)
T 1gqp_A 154 FLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNE 196 (221)
T ss_dssp CC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEEC--
T ss_pred ccCCCCCCCeeEEEEEEEEEeeccCCCCccEEEEEEEEccCCc
Confidence 4321 24455689999999987777799999999998543
No 6
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=88.72 E-value=1.1 Score=31.79 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=53.4
Q ss_pred EEecccCceeEEEEEEeCCCCCCceEEEEeecCCC--CCccCCCCCCCceEEEecCCC--CCCeEEEccccccccccEEE
Q 039218 20 IYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREH--MGFSNVNDFPPSDTAVLTPDN--LKGKPVVLKFVKFQNVRSLT 95 (135)
Q Consensus 20 i~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~--ldFd~~~~~~p~Q~~~l~~~~--~~~~~~~Lr~~KFqnV~sLt 95 (135)
|-|-|.++++|..|.|.. ..++.+.+++...+ -+|..+. +.++.+.. .....++++.. ++-|-
T Consensus 51 i~I~~~~~~~is~~~i~~---~~~k~~~ie~s~~~~p~~w~~i~------~~~f~~~~~~~q~~~f~~~~~----a~~lr 117 (139)
T 2yc2_A 51 FVLRLESCIRVSKITTLS---LNVRKLAVEKCDQDKPDQFEKVF------EVELANRGDRLQTEVHQVNIR----AKYLK 117 (139)
T ss_dssp EEEEEEEEEEEEEEEEEE---ESEEEEEEEEECSSSCCCCEEEE------EEECCCC--CCEEEEEEEEEE----EEEEE
T ss_pred EEEECCCceEEEEEEEEe---cCCcEEEEEEecCCCCCceEEEE------EEEeecCCCCceEEEccCCCc----EEEEE
Confidence 346678999999999984 24899999987654 4665542 12222111 00122332221 55688
Q ss_pred EEEeCCCCCCceEEEEEEEEEeE
Q 039218 96 IFIEDNQSDSEVTKVNKIALFGT 118 (135)
Q Consensus 96 if~~~n~~g~~~T~I~~I~l~G~ 118 (135)
|.|.++++ . -+.||.|.+.|+
T Consensus 118 l~i~s~~d-~-f~~iy~~~v~G~ 138 (139)
T 2yc2_A 118 FILLQGHG-E-FATVNRVSVVGG 138 (139)
T ss_dssp EEEEEESS-S-CCEEEEEEEEEC
T ss_pred EEEEeccC-c-eEEEEEEEEEec
Confidence 88888883 3 699999999996
No 7
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=81.20 E-value=13 Score=26.88 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=57.2
Q ss_pred eeecCCCcceEEEecccCceeEEEEEEeCCCCCCceEEEEeecCCCC--CccCCCCCCCceEEEecCCCCCCeEEEcccc
Q 039218 9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHM--GFSNVNDFPPSDTAVLTPDNLKGKPVVLKFV 86 (135)
Q Consensus 9 ~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~l--dFd~~~~~~p~Q~~~l~~~~~~~~~~~Lr~~ 86 (135)
|......+|- |-|-|.++++|..|.|.. ..++.++|++...+- +|..+. +.++.... +. ++..
T Consensus 49 W~t~g~~Pq~-i~Idf~k~~~is~~~i~~---~~vk~~~ie~s~d~~p~~w~~i~------e~ef~~~~-n~----~Q~~ 113 (153)
T 1tvg_A 49 WTTTGMFPQE-FIICFHKHVRIERLVIQS---YFVQTLKIEKSTSKEPVDFEQWI------EKDLVHTE-GQ----LQNE 113 (153)
T ss_dssp EECCSCSSEE-EEEEEEEEEEEEEEEEEE---ESEEEEEEEEECSSSSCCCEEEE------EEECCCCT-TC----CEEE
T ss_pred EECCCCCCcE-EEEECCCceEEEEEEEEe---cCCEEEEEEEECCCCCcceEEeE------EEEecCCC-Cc----EEEE
Confidence 4432344542 345667999999999984 248889998775443 554431 12222111 00 1111
Q ss_pred ccc---cccEEEEEEeCCCCCCceEEEEEEEEEeEeccc
Q 039218 87 KFQ---NVRSLTIFIEDNQSDSEVTKVNKIALFGTTVET 122 (135)
Q Consensus 87 KFq---nV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~~ 122 (135)
+|+ .++-|-|-|.++. +.-.+||.|.+.|+....
T Consensus 114 ~~~~~~~a~~lRl~i~s~~--d~fv~Iy~l~v~G~~~~~ 150 (153)
T 1tvg_A 114 EIVAHGSATYLRFIIVSAF--DHFASVHSVSAEGTVVSN 150 (153)
T ss_dssp EECCCEEEEEEEEEEEEES--SSCCEEEEEEEEEEEEC-
T ss_pred EcCCCceeEEEEEEEEccc--ccEEEEEEEEEEEEEccc
Confidence 122 3566777888777 335999999999987653
No 8
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=46.60 E-value=61 Score=21.48 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=53.1
Q ss_pred eEEEecccCceeEEEEEEeCC-CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCC-CCCeEEEccccccccccEEE
Q 039218 18 LLIYLPFTQVVKLHSIVVKGP-EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDN-LKGKPVVLKFVKFQNVRSLT 95 (135)
Q Consensus 18 Lii~IpF~~~Vkl~sI~i~~~-~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~-~~~~~~~Lr~~KFqnV~sLt 95 (135)
--|.|-|.++.+|.+|.|... ....|+..+|+.-...-++..+... ...... .....+.++.+ ..+-|-
T Consensus 44 ~~l~vDLg~~~~v~~v~i~~~~~~~~~~~~~i~~S~Dg~~w~~~~~~------~~~~~~~~~~~~~~f~~~---~aryvR 114 (145)
T 2jda_A 44 SWVQLELDKEQSIENILIVPFKPTERKLKFSIFYSNDGKNWQPLAEG------LETSSADKNGEKLTFTPV---TAKYIK 114 (145)
T ss_dssp EEEEEEEEEEEEEEEEEEEESSTTTCCEEEEEEEESSSSSCEEEEEE------EECCCSCSSCEEEEEEEE---EEEEEE
T ss_pred eeEEEECCCceEEEEEEEEeccCCCceEEEEEEEeCCCCceEEeeeC------ccccCCCCccEEEEeCcc---cEEEEE
Confidence 457788899999999999874 4468999999985444445443221 000000 01112222111 112233
Q ss_pred EEEeCCCCCCceEEEEEEEEEeEecc
Q 039218 96 IFIEDNQSDSEVTKVNKIALFGTTVE 121 (135)
Q Consensus 96 if~~~n~~g~~~T~I~~I~l~G~~~~ 121 (135)
|.+..+. +.....|..|+++|....
T Consensus 115 i~~~~~~-~~~~~~i~Ei~v~g~~~~ 139 (145)
T 2jda_A 115 LDTFGTD-VNNWSAINEIAINSAAAL 139 (145)
T ss_dssp EEEEEES-SSSEEEEEEEEESCCCSS
T ss_pred EEEECCC-CCcEeEEEEEEEECCCCC
Confidence 3444444 234578999999998543
No 9
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=39.13 E-value=92 Score=21.38 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=56.1
Q ss_pred ceEEEecccCceeEEEEEEeCC---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEEccccccc--cc
Q 039218 17 QLLIYLPFTQVVKLHSIVVKGP---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQ--NV 91 (135)
Q Consensus 17 QLii~IpF~~~Vkl~sI~i~~~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~Lr~~KFq--nV 91 (135)
..-|.|-|.++.+|.+|.+... ....|+..+|++-...-+|..+.. .++.... ....+ .|. ..
T Consensus 54 p~~i~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~I~~S~Dg~~W~~v~~------~~~~~~~-~~~~~-----~~~~~~a 121 (159)
T 3f2z_A 54 PYEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASEDGTNWESIGQ------FGFTNQD-AALKY-----YVKSSTA 121 (159)
T ss_dssp CEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESSSSSCEEEEE------EECCCCS-SCEEE-----CCCCEEE
T ss_pred CEEEEEECCCceEEEEEEEEecCCCCCCCeeEEEEEEEcCCCCeEEeEE------eecCCCC-ccEEE-----ecCCceE
Confidence 3457788889999999999763 246899999998655455554432 1221110 01111 121 12
Q ss_pred cEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218 92 RSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121 (135)
Q Consensus 92 ~sLtif~~~n~~g~~~T~I~~I~l~G~~~~ 121 (135)
+-|-|.+.++.++.....|.-|.++|....
T Consensus 122 RYVRi~~~~~~~~~~~~si~Ei~vy~~~~~ 151 (159)
T 3f2z_A 122 RYIKLVIPDGVGNGTVAAIRELDVRGTVVN 151 (159)
T ss_dssp EEEEEEECSSSSCCSCCEEEEEEEEEEECC
T ss_pred EEEEEEEEeccCCCceEEEEEEEEEcCCCC
Confidence 334445556664445789999999998765
No 10
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=38.82 E-value=82 Score=20.71 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=30.8
Q ss_pred ceEEEecccCceeEEEEEEeCC-C--CCCceEEEEeecCCCCCcc
Q 039218 17 QLLIYLPFTQVVKLHSIVVKGP-E--EEGPKTVKLFSNREHMGFS 58 (135)
Q Consensus 17 QLii~IpF~~~Vkl~sI~i~~~-~--~~~P~~iKlf~N~~~ldFd 58 (135)
..-|.|-|.++.+|.+|.|... + ...|+..+|+.-...-.|.
T Consensus 52 ~~~l~iDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~Dg~~w~ 96 (150)
T 2j1a_A 52 PHHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLDGENFT 96 (150)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESSSSSEE
T ss_pred CeEEEEECCCCeEEeEEEEeecCCCCCCCEEEEEEEEEcCCCceE
Confidence 3456677889999999999763 2 4678999999865444444
No 11
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=28.75 E-value=2.5e+02 Score=23.29 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=52.1
Q ss_pred eEEEecccCceeEEEEEEeCC---CCCCceEEEEeecCCCCCccC-CCC-----CCCceEEEecCCCCCCeEEEcccccc
Q 039218 18 LLIYLPFTQVVKLHSIVVKGP---EEEGPKTVKLFSNREHMGFSN-VND-----FPPSDTAVLTPDNLKGKPVVLKFVKF 88 (135)
Q Consensus 18 Lii~IpF~~~Vkl~sI~i~~~---~~~~P~~iKlf~N~~~ldFd~-~~~-----~~p~Q~~~l~~~~~~~~~~~Lr~~KF 88 (135)
.-|.|-|.++.+|..|.+... ....|+..+|++-...-.|.+ +.. ....+.+.+. ...-|++||
T Consensus 506 ~~i~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~i~~S~Dg~~w~~~v~~~~~~~~~~~~~~~f~-------~~~aRyvRi 578 (601)
T 1w8o_A 506 HRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFP-------ARDARYIRL 578 (601)
T ss_dssp EEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESSSSSCEEEEEEEECCSCSSCEEEEEE-------EEEEEEEEE
T ss_pred eEEEEECCCcEEEeEEEEecCCCCCCCceEEEEEEEECCCCccceeeeeEEEcCCCceEEEEeC-------CcceEEEEE
Confidence 456788889999999999752 235899999999765555654 211 0111222221 122344444
Q ss_pred ccccEEEEEEeCCCCCCceEEEEEEEEEeE
Q 039218 89 QNVRSLTIFIEDNQSDSEVTKVNKIALFGT 118 (135)
Q Consensus 89 qnV~sLtif~~~n~~g~~~T~I~~I~l~G~ 118 (135)
.+.++.++.....|..|.++|.
T Consensus 579 --------~~~~~~~~~~~~~i~Ei~v~g~ 600 (601)
T 1w8o_A 579 --------VALSEQTGHKYAAVAELEVEGQ 600 (601)
T ss_dssp --------EECCBTTSCSCCEEEEEEEEEC
T ss_pred --------EEEEcCCCCceEEEEEEEEEec
Confidence 4444453345688999999985
No 12
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=24.22 E-value=1.8e+02 Score=20.13 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=32.6
Q ss_pred ceEEEecccCceeEEEEEEeCC---CCCCceEEEEeecCCCCCccCC
Q 039218 17 QLLIYLPFTQVVKLHSIVVKGP---EEEGPKTVKLFSNREHMGFSNV 60 (135)
Q Consensus 17 QLii~IpF~~~Vkl~sI~i~~~---~~~~P~~iKlf~N~~~ldFd~~ 60 (135)
..-|.|=|.++.+|.+|.+... ....|+..+|++-...-+|..+
T Consensus 70 p~~i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~DG~~W~~v 116 (161)
T 4a41_A 70 PQSITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKI 116 (161)
T ss_dssp CEEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEESSSSCEEEE
T ss_pred CEEEEEEcCCCEEEeEEEEEecCCCCCCcEEEEEEEEECCCCceEEe
Confidence 3457788899999999999763 2367999999986555555544
No 13
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=21.86 E-value=2e+02 Score=19.87 Aligned_cols=93 Identities=13% Similarity=0.249 Sum_probs=56.0
Q ss_pred ceEEEecccCceeEEEEEEeCC---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEEccccccc--cc
Q 039218 17 QLLIYLPFTQVVKLHSIVVKGP---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQ--NV 91 (135)
Q Consensus 17 QLii~IpF~~~Vkl~sI~i~~~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~Lr~~KFq--nV 91 (135)
-.-|.|-|.++..|.+|.+... ....|+..+|++-...-+|..+.. .++.... ....+ .|. ..
T Consensus 64 p~wi~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~I~~S~Dg~~W~~v~~------~~~~~~~-~~~~~-----~f~~~~a 131 (169)
T 3ggl_A 64 PYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGR------FGFTNQD-AALEY-----YVKSIKA 131 (169)
T ss_dssp CEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESSSSCCEEEEE------EECCCCS-SCEEE-----CCCCEEE
T ss_pred CEEEEEECCCcEEEeEEEEEecCCCCCCCeeEEEEEEeCCCCCcEEeEE------EEeccCC-CcEEE-----EecCceE
Confidence 3457788889999999999763 247899999998655555554432 1221110 01111 121 12
Q ss_pred cEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218 92 RSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121 (135)
Q Consensus 92 ~sLtif~~~n~~g~~~T~I~~I~l~G~~~~ 121 (135)
+-|-|.+.++.++.....|.-|.++|....
T Consensus 132 RYVRi~~~~~~~~~~~~si~Ei~vy~~~~~ 161 (169)
T 3ggl_A 132 RYIRLTIPDDGGNSTVAAIRELDVKGTIIN 161 (169)
T ss_dssp EEEEEEECSSSSCCSCCEEEEEEEEEEECC
T ss_pred EEEEEEEEeCCCCCceEEEEEEEEEcCCCC
Confidence 333444555654445688999999998654
No 14
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=21.78 E-value=1.3e+02 Score=23.95 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCcceEEEecccCceeEEEEEEeC---CCC-----CCceEEEEeecCC
Q 039218 14 ADEQLLIYLPFTQVVKLHSIVVKG---PEE-----EGPKTVKLFSNRE 53 (135)
Q Consensus 14 ~D~QLii~IpF~~~Vkl~sI~i~~---~~~-----~~P~~iKlf~N~~ 53 (135)
.|+=..+|.---+++.+++|+... |-+ ..-+.||||+||-
T Consensus 31 ~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rV 78 (268)
T 3pry_A 31 EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 78 (268)
T ss_dssp SCCSEEEEEEECSSSCEEEEEEECSSCCC--------CCCEEEEETTE
T ss_pred cCchheeeecccCCeeEEEEEEccCCCchhhhhhhhhcCCeeEEEEEE
Confidence 455566777778999999999875 211 2346799999985
Done!