Query 039222
Match_columns 659
No_of_seqs 222 out of 796
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1386 Nucleoside phosphatase 100.0 4.1E-99 9E-104 813.6 25.3 402 20-476 6-429 (501)
2 PF01150 GDA1_CD39: GDA1/CD39 100.0 6.5E-85 1.4E-89 716.0 -8.3 390 20-477 5-425 (434)
3 KOG1385 Nucleoside phosphatase 100.0 1.1E-75 2.3E-80 620.2 26.2 366 16-474 60-445 (453)
4 COG5371 Golgi nucleoside dipho 100.0 8.9E-39 1.9E-43 341.8 13.3 383 23-472 120-534 (549)
5 COG5371 Golgi nucleoside dipho 100.0 7.1E-37 1.5E-41 327.3 1.6 382 23-471 4-431 (549)
6 TIGR03706 exo_poly_only exopol 99.4 1.8E-12 3.9E-17 137.0 11.3 156 25-240 2-157 (300)
7 PRK10854 exopolyphosphatase; P 99.2 7.9E-11 1.7E-15 133.3 11.2 164 20-242 8-171 (513)
8 PRK11031 guanosine pentaphosph 99.2 1.4E-10 3.1E-15 130.7 11.9 162 22-242 5-166 (496)
9 COG0248 GppA Exopolyphosphatas 99.1 2.2E-10 4.7E-15 128.7 12.4 159 24-241 4-162 (492)
10 PF02541 Ppx-GppA: Ppx/GppA ph 98.9 2.7E-09 5.8E-14 111.7 6.3 115 91-225 17-131 (285)
11 PRK15080 ethanolamine utilizat 92.6 0.85 1.8E-05 47.9 10.4 148 4-224 5-153 (267)
12 PF11770 GAPT: GRB2-binding ad 75.3 1.7 3.8E-05 42.1 1.9 36 496-531 10-46 (158)
13 TIGR02529 EutJ ethanolamine ut 67.6 23 0.00049 36.7 8.2 107 105-242 36-142 (239)
14 PRK13929 rod-share determining 67.1 29 0.00063 37.5 9.3 94 109-224 75-168 (335)
15 KOG3637 Vitronectin receptor, 57.1 5.8 0.00012 49.6 1.8 35 494-528 976-1010(1030)
16 PRK13410 molecular chaperone D 53.5 1.9E+02 0.004 34.8 13.5 126 107-269 112-238 (668)
17 TIGR02350 prok_dnaK chaperone 50.8 2.9E+02 0.0062 32.4 14.3 128 106-269 106-234 (595)
18 PF00012 HSP70: Hsp70 protein; 49.2 1.3E+02 0.0027 34.9 11.0 128 106-269 111-239 (602)
19 PRK00290 dnaK molecular chaper 48.1 2.7E+02 0.0058 33.0 13.6 126 107-269 110-236 (627)
20 PRK09472 ftsA cell division pr 45.9 1.4E+02 0.0031 33.4 10.5 24 104-127 50-73 (420)
21 CHL00094 dnaK heat shock prote 45.6 2.9E+02 0.0062 32.8 13.3 126 107-269 112-238 (621)
22 PLN03184 chloroplast Hsp70; Pr 44.4 3.2E+02 0.0069 32.9 13.5 126 107-269 149-275 (673)
23 TIGR01991 HscA Fe-S protein as 42.3 3.8E+02 0.0082 31.7 13.6 127 106-269 105-232 (599)
24 PRK13930 rod shape-determining 40.0 1.5E+02 0.0032 31.7 9.1 17 25-41 10-26 (335)
25 PRK05183 hscA chaperone protei 39.5 5.7E+02 0.012 30.4 14.5 127 106-269 125-252 (616)
26 PRK13411 molecular chaperone D 38.7 4.8E+02 0.01 31.2 13.8 127 107-269 110-237 (653)
27 PTZ00400 DnaK-type molecular c 33.2 5.5E+02 0.012 30.8 13.2 126 107-269 151-277 (663)
28 PF05393 Hum_adeno_E3A: Human 33.1 52 0.0011 29.6 3.4 35 497-531 36-70 (94)
29 KOG2517 Ribulose kinase and re 32.5 94 0.002 36.2 6.3 85 23-146 6-90 (516)
30 PF09435 DUF2015: Fungal prote 31.8 45 0.00097 31.9 3.0 14 550-563 67-80 (128)
31 TIGR01174 ftsA cell division p 30.4 5.1E+02 0.011 28.3 11.5 26 104-129 42-67 (371)
32 cd00012 ACTIN Actin; An ubiqui 30.0 2.5E+02 0.0053 30.5 8.9 35 206-240 143-177 (371)
33 PTZ00288 glucokinase 1; Provis 29.4 1.7E+02 0.0038 33.0 7.7 40 6-45 9-48 (405)
34 PTZ00009 heat shock 70 kDa pro 26.8 9.8E+02 0.021 28.6 13.8 96 107-224 117-212 (653)
35 KOG2388 UDP-N-acetylglucosamin 25.7 2E+02 0.0043 33.3 7.2 97 20-180 94-190 (477)
36 smart00268 ACTIN Actin. ACTIN 25.3 2.7E+02 0.0059 30.2 8.2 84 132-240 94-177 (373)
37 cd08663 DAP_dppA_1 Peptidase M 25.3 48 0.001 35.4 2.3 55 571-626 78-136 (266)
38 COG1564 THI80 Thiamine pyropho 23.9 1.3E+02 0.0029 31.0 5.1 62 110-187 75-136 (212)
39 PF11104 PilM_2: Type IV pilus 23.1 3.2E+02 0.0069 29.6 8.2 104 113-226 88-200 (340)
40 PF00370 FGGY_N: FGGY family o 22.6 1.6E+02 0.0034 30.0 5.4 18 24-41 1-18 (245)
41 PF13941 MutL: MutL protein 22.4 1.1E+02 0.0023 35.3 4.4 57 109-165 39-99 (457)
42 PRK13917 plasmid segregation p 22.3 7.2E+02 0.015 27.2 10.7 74 147-223 119-202 (344)
43 PTZ00459 mucin-associated surf 22.1 44 0.00096 36.0 1.3 11 507-518 9-19 (291)
44 PHA03099 epidermal growth fact 21.8 92 0.002 29.9 3.1 12 519-530 122-133 (139)
45 TIGR00241 CoA_E_activ CoA-subs 21.7 1.6E+02 0.0034 30.4 5.2 16 26-41 3-18 (248)
46 PF01869 BcrAD_BadFG: BadF/Bad 20.6 1.1E+02 0.0024 31.7 4.0 40 106-146 35-74 (271)
No 1
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-99 Score=813.61 Aligned_cols=402 Identities=33% Similarity=0.600 Sum_probs=346.9
Q ss_pred CCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCC
Q 039222 20 PQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGG 99 (659)
Q Consensus 20 ~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G 99 (659)
+.-++-++|||||+|||||||.+.-. +.+ .++.+ .++. +.. ..+.||
T Consensus 6 ~~~kYgiviDaGSSgTrl~Vy~w~~~---~g~-~~~~i-------------------~~~~---------~~~-~k~~PG 52 (501)
T KOG1386|consen 6 PNLKYGIVIDAGSSGTRLFVYKWPAE---SGN-PLTGI-------------------VGQI---------YDC-LKLGPG 52 (501)
T ss_pred CcceEEEEEecCCCCceEEEEeeccc---CCC-cccCc-------------------cchh---------hcc-cccCCC
Confidence 56788999999999999999998632 100 01000 0111 111 347999
Q ss_pred CchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEc
Q 039222 100 TPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKII 179 (659)
Q Consensus 100 ls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VI 179 (659)
+|+|+++| +.|..+|+|||++|+++||+++|++|||||+||||||+||.+++++||+.++++|+..++|.|+++|||||
T Consensus 53 iSsfa~nP-~~a~~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~II 131 (501)
T KOG1386|consen 53 ISSFADNP-EGASVYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARII 131 (501)
T ss_pred hhhhccCh-hhhHHHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEe
Confidence 99999999 99999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred cCCcccchhhhhhHHhhcccCCCC----CCceeEEEecCCCceEEEEeec---cccCCcceeEEEEc---ceeeeEEEee
Q 039222 180 SGTEEAYYGWTALNYRTGMLGAIP----KKETFGSLDLGGSSLQVTFESK---EHMHNETNLNLRIG---AVNHHLSAYS 249 (659)
Q Consensus 180 sG~eEG~y~WiavNyllg~l~~~p----~~~t~G~lDlGGaStQIaf~~~---~~~~~e~~~~l~l~---g~~y~LYshS 249 (659)
||+|||+|+|||+||++|+|+..+ ++.|+|+||||||||||||++. +..++++..++.+| .++|+||+||
T Consensus 132 sG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~S 211 (501)
T KOG1386|consen 132 SGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHS 211 (501)
T ss_pred ecccceehhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEe
Confidence 999999999999999999999743 5789999999999999999998 44567778888887 2679999999
Q ss_pred ccCcchhHHHHHHHHHHHhhCCCCcccCccCCCccccCCCCCCCcceeEeecccCCCCCCCCCCcccCccccccCCCCce
Q 039222 250 LSGYGLNDAFDKSVVKLLKRIPNVTTSDLVNGKVEIKHPCLQSGYKEQYVCSHCASSPAENGSPVVGGKKLVKGRKSGTT 329 (659)
Q Consensus 250 yLgyGln~Ar~r~la~Ll~~~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~s~~~~~~~~~~s~~v~g~~~~~~~~~~~~ 329 (659)
|||||+|||++|++++|+++.++.+......++..+.|||+|+||..++++++|..+ +|.+. .+++..
T Consensus 212 fLgyG~N~A~~ry~~~Ll~~~~n~n~~~~~~~~~~~~DPC~p~Gy~~~~~~~~~~~~------~~~e~------~~~~~~ 279 (501)
T KOG1386|consen 212 FLGYGANEALDRYLAMLLEKLPNKNGLTGLTGDNPLTDPCLPRGYNYDVNLSDVYSS------PCPEE------SKNGQS 279 (501)
T ss_pred ecccchhHHHHHHHHHHHHhccccccccccccCcccCCCCCCCCcceeeeecccccc------ccccc------cCCCce
Confidence 999999999999999999987643321223455578999999999999999888655 45222 256778
Q ss_pred eEeccCCCHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCC-CCCCCCceeEEeeeeEe-eeecCCCCccchHHHHH
Q 039222 330 VQLTGAPNWEECSALAKTVVNLSEWLNISPGVDCDMQPCALPDG-LPRPFGQFYAISGFFVV-YRFFNLTSEASLDDVLE 407 (659)
Q Consensus 330 ~~l~GtGnf~~C~~lv~~lLn~s~~~~~~~~~~C~~~~Csf~g~-~P~~~g~FyAfS~Fyyt-~~fl~L~~~~tL~~~~~ 407 (659)
+.+.|||||++|++.+..+++.. +|.+++|+|||+ +|+.+++|||||+|||+ .++|++++++.+++|.+
T Consensus 280 ~~~~GtGn~~~C~~~v~~ll~~~---------~C~~~~Csf~gv~~P~i~f~f~~fSef~y~t~~~f~lgg~y~~~~f~~ 350 (501)
T KOG1386|consen 280 IELQGTGNWSQCRSAVLPLLNFK---------SCPYQPCSFNGVFQPPIQFEFYGFSEFFYTTNDVFGLGGKYSLDKFTK 350 (501)
T ss_pred EEEecCCCHHHHHHHHHHhcCCC---------CCCCcccccCCEeCCCcCceeEEEEeeeeehhhhhcccceecHHHHHH
Confidence 99999999999999999999863 899999999998 79999999999999995 56899999999999999
Q ss_pred HHHHHhhccHHHHhhc-CC--CCcchhhhcccHHHHHHhcccCCCCCCCc---e----EeCCcccccchhHHHHHhccc
Q 039222 408 KGREFCEKTWDIARVS-VP--PQPFIEQYCFRSPYVVLLLREGLHITDKN---I----IVGSGSITWTLGVALLEAGKT 476 (659)
Q Consensus 408 aa~~fCs~~W~~lk~~-~~--~~~~l~~yCF~aaYI~~LL~dGygf~d~~---i----kI~~~eisWTLGa~L~~a~~~ 476 (659)
++++||+++|++++.. ++ +++++.+|||+++||++|||+||+|+.++ + +|.+.+++||||+||+.++-.
T Consensus 351 ~~~~fC~~~Ws~l~~~~y~~~dE~~L~~yCFkaawi~slLh~Gf~~~~~~~~~i~~~~kv~~~el~WtLG~~lY~~~f~ 429 (501)
T KOG1386|consen 351 AGREFCGKEWSTLRTRKYPSADEEYLKTYCFKAAWILSLLHEGFGFPKDQWESIQFASKVAGSELQWTLGAILYMASFI 429 (501)
T ss_pred HHHHHhhchHHHHHhccCCCCCHHHHHHHhhhHHHHHHHHhcccCCCcccccccchhhhhcCcccchhhhhHHHHhhcc
Confidence 9999999999999886 54 67899999999999999999999999883 2 799999999999999998544
No 2
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=6.5e-85 Score=716.04 Aligned_cols=390 Identities=29% Similarity=0.568 Sum_probs=316.0
Q ss_pred CCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCC
Q 039222 20 PQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGG 99 (659)
Q Consensus 20 ~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G 99 (659)
.+..+++||||||||||+|||+|...- .+...+.... .+. ...+ ..+.||
T Consensus 5 ~~~~y~vviDAGSsgsR~~vy~~~~~~-----~~~~~~~~~~-------------------~~~---~~~~---~~~~pg 54 (434)
T PF01150_consen 5 ESRKYGVVIDAGSSGSRVHVYKWRCRD-----NNSLPVVPLV-------------------EQS---KPVF---KKVEPG 54 (434)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEEEEEE-----CCGCEEEEEE-------------------EEB---EEHC---CHHCCH
T ss_pred CCccEEEEEEcCCCCceEEEEEEecCC-----CccCCccccc-------------------eec---cchh---hcccch
Confidence 346789999999999999999996520 0000000000 000 0012 236789
Q ss_pred CchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEc
Q 039222 100 TPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKII 179 (659)
Q Consensus 100 ls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VI 179 (659)
|++|+.+| ++++++|+|||++|+++||++.|++|||||+||||||+|+.+++++||++|++.|++.++|.|.++|||||
T Consensus 55 ls~~~~~~-~~~~~~l~~ll~~a~~~ip~~~~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~vi 133 (434)
T PF01150_consen 55 LSSFADNP-EKAAESLQPLLDFAKSVIPKSQHSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVI 133 (434)
T ss_dssp HHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHSCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE-
T ss_pred HHHhCCCh-HHHHHHHHHHHHHHHhhCCHHHhCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEec
Confidence 99999999 89999999999999999999999999999999999999999999999999999998769999999999999
Q ss_pred cCCcccchhhhhhHHhhcccCCC----CCCceeEEEecCCCceEEEEeeccc------cCC--cceeEEEEcceeeeEEE
Q 039222 180 SGTEEAYYGWTALNYRTGMLGAI----PKKETFGSLDLGGSSLQVTFESKEH------MHN--ETNLNLRIGAVNHHLSA 247 (659)
Q Consensus 180 sG~eEG~y~WiavNyllg~l~~~----p~~~t~G~lDlGGaStQIaf~~~~~------~~~--e~~~~l~l~g~~y~LYs 247 (659)
+|+|||+|+|||||||+|+|+.. +..+|+|+||||||||||||++++. ..+ .+...+++++++|+||+
T Consensus 134 sG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys 213 (434)
T PF01150_consen 134 SGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYS 213 (434)
T ss_dssp -HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEE
T ss_pred CHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEE
Confidence 99999999999999999999876 2467999999999999999999932 111 23578889999999999
Q ss_pred eeccCcchhHHHHHHHHHHHhhCCCCcccCccCCCccccCCCCCCCcceeEeecccCCCCCCCCCCcccCccccccCCCC
Q 039222 248 YSLSGYGLNDAFDKSVVKLLKRIPNVTTSDLVNGKVEIKHPCLQSGYKEQYVCSHCASSPAENGSPVVGGKKLVKGRKSG 327 (659)
Q Consensus 248 hSyLgyGln~Ar~r~la~Ll~~~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~s~~~~~~~~~~s~~v~g~~~~~~~~~~ 327 (659)
|||||||+++||+++++++++... . .+...+.|||+|+||...+++..+ ..
T Consensus 214 ~SyLgyG~~~Ar~~~l~~l~~~~~---~----~~~~~i~~PC~p~G~~~~~~~~~~----------------------~~ 264 (434)
T PF01150_consen 214 HSYLGYGLNEARKRYLASLVSNSS---K----KSSGVIPNPCLPKGYNQSWTYSDV----------------------EY 264 (434)
T ss_dssp EEEETCSHHHHHHHHHHHHTTSTT---T----EETCEEEETTS-BT-EEESCSCHE----------------------ES
T ss_pred eecccccHHHHHHHHHHHHhhhcc---c----ccccccCCccccCCccceEEeccc----------------------cc
Confidence 999999999999999999887643 0 012368999999999988754322 01
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCC-CCC---CCCceeEEeeeeEeeeecCCCCcc---
Q 039222 328 TTVQLTGAPNWEECSALAKTVVNLSEWLNISPGVDCDMQPCALPDG-LPR---PFGQFYAISGFFVVYRFFNLTSEA--- 400 (659)
Q Consensus 328 ~~~~l~GtGnf~~C~~lv~~lLn~s~~~~~~~~~~C~~~~Csf~g~-~P~---~~g~FyAfS~Fyyt~~fl~L~~~~--- 400 (659)
..++++|+|||++|+++++++++.. ..|...+|.|+++ +|. ..++|+++|+||++.++|++.+..
T Consensus 265 ~~~~~~Gtg~~~~C~~~i~~~l~~~--------~~c~~~~C~~~~v~~p~~~~~~~~f~a~s~fy~~~~~l~l~~~~~~~ 336 (434)
T PF01150_consen 265 DVITLTGTGDFEKCRELIRKLLNKN--------ANCEYSPCSFNGVYQPSIPSGNGFFYAFSYFYYTADFLGLVSPSDTY 336 (434)
T ss_dssp SCCEBTTHHHHHHCCTTSHHHHT----------SHHHHHHHHTTTTBTTSHHHHHHSETTEEEEEEHHHHHHHHHHHHTS
T ss_pred ccccCCCCCchHHHHHHHHHHhhcc--------ccCCCCCCccCCccCCcccccccceeEEEEEEEeehhcCcCCccccc
Confidence 2457899999999999999999853 3798899999998 666 467899999999999999998766
Q ss_pred chHHHHHHHHHHhhccHHHHhhcCCCC--cc----hhhhcccHHHHHHhcccCCCCCCC-c-e----EeCCcccccchhH
Q 039222 401 SLDDVLEKGREFCEKTWDIARVSVPPQ--PF----IEQYCFRSPYVVLLLREGLHITDK-N-I----IVGSGSITWTLGV 468 (659)
Q Consensus 401 tL~~~~~aa~~fCs~~W~~lk~~~~~~--~~----l~~yCF~aaYI~~LL~dGygf~d~-~-i----kI~~~eisWTLGa 468 (659)
++.+|.++++++|+++|+++++.++.. ++ +..+||+++||++||++||||+++ + | +|++.+++|||||
T Consensus 337 ~l~~~~~aa~~~Cs~~w~~i~~~~~~~~~~~~~~~l~~~Cf~~~yi~sLL~~Gyg~~~~~~~i~~~~kI~~~ev~WtLGa 416 (434)
T PF01150_consen 337 TLSDFKSAAKEFCSKSWSEIKAEFPGNKYKYLPDELPYYCFDAAYIYSLLHDGYGFDDDSQEITFVKKINGQEVSWTLGA 416 (434)
T ss_dssp SSSHHHHHHHHHHTSSHHHHHHHSCCSSHEEEESHHHHHHHHHHHHCCCCHTTS--THHHHHCCCHHHHHTEEEECHHHC
T ss_pred cchHHHHHHHHHHcchHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhcccCCCCCCceEEeeeeeCCcccCcHHHH
Confidence 999999999999999999998876643 23 348999999999999999999998 3 3 6999999999999
Q ss_pred HHHHhcccc
Q 039222 469 ALLEAGKTF 477 (659)
Q Consensus 469 ~L~~a~~~~ 477 (659)
||..++..+
T Consensus 417 ~l~~~~~~~ 425 (434)
T PF01150_consen 417 ALYLINALP 425 (434)
T ss_dssp CCCHTTTSE
T ss_pred HHHHhhccc
Confidence 999998776
No 3
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-75 Score=620.25 Aligned_cols=366 Identities=27% Similarity=0.422 Sum_probs=307.9
Q ss_pred CCCCCCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCcccccc
Q 039222 16 RISAPQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKG 95 (659)
Q Consensus 16 ~~~~~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 95 (659)
..+..+..+++||||||||||||||+|++|+... .|+ ++.| .| +.
T Consensus 60 ~~s~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~------------~p~----------------le~E----~F---~~ 104 (453)
T KOG1385|consen 60 PNSSIKRQYAIIIDAGSTGTRVHVYKFDQCLPGM------------PPE----------------LEHE----LF---KE 104 (453)
T ss_pred CCCCCceEEEEEEecCCCcceEEEEEeccCCCCC------------Cch----------------hHHH----HH---hh
Confidence 3444667899999999999999999999996431 222 1222 33 45
Q ss_pred CCCCCchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccce
Q 039222 96 LPGGTPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDW 175 (659)
Q Consensus 96 ~~~Gls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~ 175 (659)
++||||+|+.+| +.++++|++||+.|++.||++.|++|||.|+||||+|+||.++++.||++||+.|++.+||...++.
T Consensus 105 ~kPGLSsfaddp-~~aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~ 183 (453)
T KOG1385|consen 105 VKPGLSSFADDP-EEAANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDA 183 (453)
T ss_pred cCCcccccCCCh-HHHHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCc
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999977999998889
Q ss_pred eEEccCCcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeecccc----CCcceeEEEEcceeeeEEEeecc
Q 039222 176 VKIISGTEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHM----HNETNLNLRIGAVNHHLSAYSLS 251 (659)
Q Consensus 176 ~~VIsG~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~----~~e~~~~l~l~g~~y~LYshSyL 251 (659)
|.||+|.|||+|+|||+|||+|+++.+ .++|+|++|||||||||+|.|+... ++.+.+.+.+.|.+|.||+||||
T Consensus 184 VsIm~GtdEGv~aWiTiN~Llg~L~~~-~~~tvgv~DLGGGSTQi~f~p~~e~~~~~~~~y~~~l~~~~~ky~LythSyL 262 (453)
T KOG1385|consen 184 VSIMDGTDEGVYAWITINYLLGTLGAP-GHRTVGVVDLGGGSTQITFLPTFEDTLEAPVPYKRELDFFGRKYKLYTHSYL 262 (453)
T ss_pred eeeccCcccceeeeeehhhhhcccCCC-CCCceEEEEcCCceEEEEEecCcccccccCCcceeeeeecCceEEEEEeccc
Confidence 999999999999999999999999864 4679999999999999999997652 33477889999999999999999
Q ss_pred CcchhHHHHHHHHHHHhhCCCCcccCccCCCccccCCCCCCCcceeEeecccCCCCCCCCCCcccCccccccCCCCceeE
Q 039222 252 GYGLNDAFDKSVVKLLKRIPNVTTSDLVNGKVEIKHPCLQSGYKEQYVCSHCASSPAENGSPVVGGKKLVKGRKSGTTVQ 331 (659)
Q Consensus 252 gyGln~Ar~r~la~Ll~~~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~s~~~~~~~~~~s~~v~g~~~~~~~~~~~~~~ 331 (659)
|||+.+||...+. .+++.. ...++.+||+|.||...|+++.+ .++
T Consensus 263 g~GL~aAR~~il~-~~e~~~---------~~h~l~spCl~~~~~~~~~~~~~-------------------------~y~ 307 (453)
T KOG1385|consen 263 GLGLKAARLAILK-VLENEE---------TTHQLISPCLPPGYAGEWEYGGV-------------------------TYK 307 (453)
T ss_pred chHHHHHHHhhhh-hhcccc---------ccceeeccccCcchhhheeecce-------------------------EEE
Confidence 9999999988775 333321 13368999999999999887543 233
Q ss_pred ecc----CCCHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCCCceeEEeeeeEeeeecCCCC-----ccch
Q 039222 332 LTG----APNWEECSALAKTVVNLSEWLNISPGVDCDMQPCALPDGLPRPFGQFYAISGFFVVYRFFNLTS-----EASL 402 (659)
Q Consensus 332 l~G----tGnf~~C~~lv~~lLn~s~~~~~~~~~~C~~~~Csf~g~~P~~~g~FyAfS~Fyyt~~fl~L~~-----~~tL 402 (659)
+-| ..-+++|+..+..++.. .|...||.|+ +.+||+||+||+.+--.|+.. ...+
T Consensus 308 v~~~~s~~~~~E~c~~~~~~~l~~----------~~~~~p~~~~------~~~~y~fSYfyDRa~~~G~vd~~~~~~~~v 371 (453)
T KOG1385|consen 308 VSGSQSGASLFEQCRGTIDAVLEG----------SCVHRPCEFK------QSDVYLFSYFYDRAAEVGLVDPFKGGMLEV 371 (453)
T ss_pred ecCccCccccchhhHHHHHHHHhc----------CccccccccC------CCcEEEEehhhhhhhhcCCccCCccccchH
Confidence 333 45679999999998863 5999999987 578999999999888777754 3478
Q ss_pred HHHHHHHHHHhhccHHHHhhcCCC--CcchhhhcccHHHHHHhcccCCCCCCCc-----eEeCCcccccchhHHHHHhc
Q 039222 403 DDVLEKGREFCEKTWDIARVSVPP--QPFIEQYCFRSPYVVLLLREGLHITDKN-----IIVGSGSITWTLGVALLEAG 474 (659)
Q Consensus 403 ~~~~~aa~~fCs~~W~~lk~~~~~--~~~l~~yCF~aaYI~~LL~dGygf~d~~-----ikI~~~eisWTLGa~L~~a~ 474 (659)
.++..+|+++|+.- ...+. .+.++..|+|+.||++||++||||++++ +||+++|++|+||+++....
T Consensus 372 ~df~~ka~~~c~~~-----~t~~~~e~~~~P~~ClDL~Y~~sLL~~Gfgi~dsk~l~l~KKi~~~Ei~W~LGaa~~~l~ 445 (453)
T KOG1385|consen 372 ADFEKKAEEACRSL-----ETFPLDELSNLPFLCLDLTYIISLLKDGFGIEDSKVLHLAKKIDNIEISWALGAAFELLK 445 (453)
T ss_pred HHHHHHHHHHHHhh-----hccCccccccCcHHHHHHHHHHHHHHhhcCCCCCceeEeeeecCceEeehhcccchhhhh
Confidence 89999999999874 12332 2566788999999999999999999986 38999999999999987644
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-39 Score=341.81 Aligned_cols=383 Identities=19% Similarity=0.171 Sum_probs=297.5
Q ss_pred ceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCch
Q 039222 23 STALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTPF 102 (659)
Q Consensus 23 ~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls~ 102 (659)
.++.+|||||||+|+|+|+|.+| +++ ++ ..|.+...+.+||++
T Consensus 120 qYv~~idagstgsr~~iyqfidg----------------e~~--------------~~-------~~~~~~n~L~~~l~d 162 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFIDG----------------EIE--------------GQ-------YLWLNTNYLEPGLSD 162 (549)
T ss_pred heecccccCCCccceeEEEeecC----------------ccC--------------cc-------hhhhhhhhhcccccc
Confidence 56788999999999999999987 111 11 134455678999999
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCccc-ccceeEEccC
Q 039222 103 MCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLC-QRDWVKIISG 181 (659)
Q Consensus 103 ~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f-~~~~~~VIsG 181 (659)
|+..+ ..+++++.+|++.|.+.+|.+.++.+|+.+.||||+|++.+.+...||..+|.-|.++++|.. ..+.|+||.|
T Consensus 163 ~d~~t-~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G 241 (549)
T COG5371 163 FDTDT-VGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNG 241 (549)
T ss_pred ccccc-HHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccC
Confidence 99988 899999999999999999999999999999999999999999999999999999999999974 4579999999
Q ss_pred CcccchhhhhhHHhhcccCCCC-CCceeEEEecCCCceEEEEeecccc------CCcceeEEEEcceeeeEEEeeccCcc
Q 039222 182 TEEAYYGWTALNYRTGMLGAIP-KKETFGSLDLGGSSLQVTFESKEHM------HNETNLNLRIGAVNHHLSAYSLSGYG 254 (659)
Q Consensus 182 ~eEG~y~WiavNyllg~l~~~p-~~~t~G~lDlGGaStQIaf~~~~~~------~~e~~~~l~l~g~~y~LYshSyLgyG 254 (659)
.+||.|+|++.||++++.+..- .+.|.+++|+||+||||.|++.... .......+.+++.+|.+|.+|-++||
T Consensus 242 ~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d~gg~stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~ 321 (549)
T COG5371 242 VDEGNLADPCMNRGLSNDGTDAGTHGTGAVVDCGGGSTQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYT 321 (549)
T ss_pred ccccchhhhhhhhhhccccCCCcccCcccceeccCcceeeeecCCCCccccccccCccccccccCCccceEEeehhhhhh
Confidence 9999999999999999987643 3678899999999999999987643 23456677778889999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCcccCc---cCCCccccCCCCCCCcceeEeecccCCCCCCCCCCcccCccccccCCCCceeE
Q 039222 255 LNDAFDKSVVKLLKRIPNVTTSDL---VNGKVEIKHPCLQSGYKEQYVCSHCASSPAENGSPVVGGKKLVKGRKSGTTVQ 331 (659)
Q Consensus 255 ln~Ar~r~la~Ll~~~~~~~~~~~---~~~~~~i~~PClp~Gy~~~~~~s~~~~~~~~~~s~~v~g~~~~~~~~~~~~~~ 331 (659)
++++++..-...+.+. +++.+. .+-+..+.|||+++.-..+.+ ..| -+++ .-.++-
T Consensus 322 andv~~~~~~~~~~nf--lKsv~el~g~s~t~~l~~~~l~~~i~~~~k-~s~-----------~eak-------~~l~il 380 (549)
T COG5371 322 ANDVFKKGGSVAFRNF--LKSVDELCGDSWTQILSHKELGPSIRENLK-DSC-----------FEAK-------WVLNIL 380 (549)
T ss_pred HHHHHhhccceechhH--HHHHHHHhcccchhhhcCcccCcccchhhh-hhh-----------hhhh-------hheeee
Confidence 9999986533333221 001010 011223679999886555421 112 1111 111222
Q ss_pred eccCCCH---HHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCC-CCCCC-----C-ceeEEeeeeEeeeecCCCC-cc
Q 039222 332 LTGAPNW---EECSALAKTVVNLSEWLNISPGVDCDMQPCALPDG-LPRPF-----G-QFYAISGFFVVYRFFNLTS-EA 400 (659)
Q Consensus 332 l~GtGnf---~~C~~lv~~lLn~s~~~~~~~~~~C~~~~Csf~g~-~P~~~-----g-~FyAfS~Fyyt~~fl~L~~-~~ 400 (659)
..|--+. .+|+.+++.++... .+|...+|+|+|+ +|... . +.|.+++||....-|+.+. .+
T Consensus 381 ~~G~d~p~~s~qcr~l~~~~L~kd--------~~c~spf~S~~gVeq~k~s~Tl~~~l~~y~isy~~~rgk~L~~p~~sf 452 (549)
T COG5371 381 HEGFDNPLESHQCRNLADLILSKD--------PACHSPFCSFEGVEQTKLSWTLGTSLDIYNISYAYDRGKLLGSPSNSF 452 (549)
T ss_pred eeccCCcccchhhhhhhhhhhccc--------cccCCCccccccccccceeeeccccCcceeEEEecCCCcccCCccccc
Confidence 2454333 58999999998766 3899999999997 77652 2 6899999999999999877 89
Q ss_pred chHHHHHHHHHHhhc--cHHHHhhcCC---CCcchhhhcccHHHHHHhcccCCCCCCCc-----eEeCCcccccchhHHH
Q 039222 401 SLDDVLEKGREFCEK--TWDIARVSVP---PQPFIEQYCFRSPYVVLLLREGLHITDKN-----IIVGSGSITWTLGVAL 470 (659)
Q Consensus 401 tL~~~~~aa~~fCs~--~W~~lk~~~~---~~~~l~~yCF~aaYI~~LL~dGygf~d~~-----ikI~~~eisWTLGa~L 470 (659)
+..+|...|.-+|.- -|..+-.-.+ +.+.....|++..|..+||+.||.++.++ +++.+.|.+|.|||.+
T Consensus 453 t~k~~~~la~i~C~~~~~~~~~Fsl~~~~ke~k~~~~~~L~~~~~~slls~gYei~~~~~~~~~ks~~nke~g~~l~as~ 532 (549)
T COG5371 453 TNKGFLMLAIIVCIFYLIWRRRFSLYNILKELKRRRLKCLDRSDPFSLLSEGYEIPSSRMLDLGKSSANKEHGPCLGASL 532 (549)
T ss_pred chhHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhhHHHhhhccchhhhhccccCchhhhhhhcccccccccccccccch
Confidence 999999999999985 4554321111 12344568999999999999999999875 4788999999999986
Q ss_pred HH
Q 039222 471 LE 472 (659)
Q Consensus 471 ~~ 472 (659)
..
T Consensus 533 s~ 534 (549)
T COG5371 533 SA 534 (549)
T ss_pred hh
Confidence 54
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-37 Score=327.29 Aligned_cols=382 Identities=22% Similarity=0.319 Sum_probs=291.4
Q ss_pred ceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCch
Q 039222 23 STALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTPF 102 (659)
Q Consensus 23 ~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls~ 102 (659)
.+-+||||||+|+|||+|-++.. -.|++-+. | -++....++..|...|.- .+.||+++
T Consensus 4 ~~~~~~d~~~s~~~v~~~~w~~~--t~Ss~~~~-------~-------~si~~~~~~~~~~~~w~~------k~~~~is~ 61 (549)
T COG5371 4 RFGIVIDAGSSGSRVHVFKWDQD--TESSLHAT-------P-------QSILQSVTHIHQEPDWTF------KLNPGISS 61 (549)
T ss_pred hhhhhhhhhcccceEEEEEeccC--cccccCCC-------C-------ccccccccCcccCCcccc------ccCCcccc
Confidence 34578999999999999999753 11222121 1 113345556666665543 36799999
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccc--cceeEEcc
Q 039222 103 MCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQ--RDWVKIIS 180 (659)
Q Consensus 103 ~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~--~~~~~VIs 180 (659)
|..+|..+-..++++||++|+..||+..++++|+++.||||||+|+.+-|.-++..++++++...-|... -.-.++|+
T Consensus 62 ~~~k~~~~~~~~lkelLdfa~~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfid 141 (549)
T COG5371 62 FEKKPQDAEKSHLKELLDFAKNIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFID 141 (549)
T ss_pred cCCCccccccccccchhhhhhccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeec
Confidence 9999944455699999999999999999999999999999999999999999999999998865555542 24689999
Q ss_pred CCcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccc---cCCcce----eEEEEcc--eeeeEEEeecc
Q 039222 181 GTEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEH---MHNETN----LNLRIGA--VNHHLSAYSLS 251 (659)
Q Consensus 181 G~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~---~~~e~~----~~l~l~g--~~y~LYshSyL 251 (659)
|+-||.|+|...|||.+.+... .+.|+|+.||||+++||||+.... ...... .-+++.| +.++|++-.++
T Consensus 142 ge~~~~~~~~~~n~L~~~l~d~-d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~ 220 (549)
T COG5371 142 GEIEGQYLWLNTNYLEPGLSDF-DTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRL 220 (549)
T ss_pred CccCcchhhhhhhhhccccccc-ccccHHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHH
Confidence 9999999999999999988754 457999999999999999986443 111222 2334333 56899999999
Q ss_pred CcchhHHHHHHHHHHHhhCCCCcccCccCCCccccCCCCCCCcceeEeecccCCCCCCCCCCcccCccccccCCCCceeE
Q 039222 252 GYGLNDAFDKSVVKLLKRIPNVTTSDLVNGKVEIKHPCLQSGYKEQYVCSHCASSPAENGSPVVGGKKLVKGRKSGTTVQ 331 (659)
Q Consensus 252 gyGln~Ar~r~la~Ll~~~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~s~~~~~~~~~~s~~v~g~~~~~~~~~~~~~~ 331 (659)
|+|.|+|+.|++..++...+ +. ..+.+.+||++.|-.... ....
T Consensus 221 ~l~~n~~f~~y~g~~ieil~-----G~--~Eg~~a~~~m~~~ls~~g-----------------------------~~~~ 264 (549)
T COG5371 221 GLGANYAFRRYLGDLIEILN-----GV--DEGNLADPCMNRGLSNDG-----------------------------TDAG 264 (549)
T ss_pred hhccccccceecccceeecc-----Cc--cccchhhhhhhhhhcccc-----------------------------CCCc
Confidence 99999999999877776543 11 122478999999855432 1122
Q ss_pred eccCCCHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCC-CCCC-----CCceeEEeeeeEe-eeecCCCCccchHH
Q 039222 332 LTGAPNWEECSALAKTVVNLSEWLNISPGVDCDMQPCALPDG-LPRP-----FGQFYAISGFFVV-YRFFNLTSEASLDD 404 (659)
Q Consensus 332 l~GtGnf~~C~~lv~~lLn~s~~~~~~~~~~C~~~~Csf~g~-~P~~-----~g~FyAfS~Fyyt-~~fl~L~~~~tL~~ 404 (659)
..|||+..+|-....+++... .+|...||.|+|. -|.+ .-+||++|.|+|+ .+.+++..++-+..
T Consensus 265 ~~~T~~v~d~gg~stqll~~~--------r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~n 336 (549)
T COG5371 265 THGTGAVVDCGGGSTQLLLKP--------RPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRN 336 (549)
T ss_pred ccCcccceeccCcceeeeecC--------CCCccccccccCccccccccCCccceEEeehhhhhhHHHHHhhccceechh
Confidence 378999999999888887754 4899999999996 3432 3579999999885 56889999999999
Q ss_pred HHHHHHHHhhccHHHHh--hcCCC--CcchhhhcccHHHHHHhcccCCCCCCC--c-------e---------------E
Q 039222 405 VLEKGREFCEKTWDIAR--VSVPP--QPFIEQYCFRSPYVVLLLREGLHITDK--N-------I---------------I 456 (659)
Q Consensus 405 ~~~aa~~fCs~~W~~lk--~~~~~--~~~l~~yCF~aaYI~~LL~dGygf~d~--~-------i---------------k 456 (659)
|.+.++++|..+|.++- +.+.+ .+.+..-||.+.|++++||+|+..+.. + + .
T Consensus 337 flKsv~el~g~s~t~~l~~~~l~~~i~~~~k~s~~eak~~l~il~~G~d~p~~s~qcr~l~~~~L~kd~~c~spf~S~~g 416 (549)
T COG5371 337 FLKSVDELCGDSWTQILSHKELGPSIRENLKDSCFEAKWVLNILHEGFDNPLESHQCRNLADLILSKDPACHSPFCSFEG 416 (549)
T ss_pred HHHHHHHHhcccchhhhcCcccCcccchhhhhhhhhhhhheeeeeeccCCcccchhhhhhhhhhhccccccCCCcccccc
Confidence 99999999999996552 11121 223678899999999999999988752 0 0 3
Q ss_pred eCCcccccchhHHHH
Q 039222 457 VGSGSITWTLGVALL 471 (659)
Q Consensus 457 I~~~eisWTLGa~L~ 471 (659)
|...++.||||-.|.
T Consensus 417 Veq~k~s~Tl~~~l~ 431 (549)
T COG5371 417 VEQTKLSWTLGTSLD 431 (549)
T ss_pred ccccceeeeccccCc
Confidence 667789999999863
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.38 E-value=1.8e-12 Score=137.00 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=109.1
Q ss_pred eEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCchhh
Q 039222 25 ALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTPFMC 104 (659)
Q Consensus 25 ~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls~~~ 104 (659)
+.+||.||.+.|+.||+.+++ ++.. ++ .....+++.+|+...+
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~--------~~~~---l~--------------------------~~~~~vrL~~~~~~~g 44 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEG--------SLQV---LF--------------------------NEKEMVRLGEGLDSTG 44 (300)
T ss_pred eEEEEecCCeeeEEEEEecCC--------cEEE---hh--------------------------heeeeeecCCCCCCCC
Confidence 468999999999999996532 1111 11 1122456777776667
Q ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcc
Q 039222 105 RKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEE 184 (659)
Q Consensus 105 ~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eE 184 (659)
..+ +++.+.+...|..-++.. +.++.+.+.+.||++||. ..|++++++.|+.. +++ .++||||+||
T Consensus 45 ~i~-~e~i~~~~~~l~~f~~~~--~~~~v~~i~~vaTsa~R~--A~N~~~~~~~i~~~----tgi-----~i~visg~eE 110 (300)
T TIGR03706 45 RLS-EEAIERALEALKRFAELL--RGFPVDEVRAVATAALRD--AKNGPEFLREAEAI----LGL-----PIEVISGEEE 110 (300)
T ss_pred CcC-HHHHHHHHHHHHHHHHHH--HhCCCCeEEEEEcHHHHc--CCCHHHHHHHHHHH----HCC-----CeEEeChHHH
Confidence 777 455544445555444444 345567899999999997 79999999999988 564 4899999999
Q ss_pred cchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcc
Q 039222 185 AYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGA 240 (659)
Q Consensus 185 G~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g 240 (659)
+.|.|+++...+.. . ...++|+||||||+++..++. ..+...+.+|.
T Consensus 111 a~l~~~gv~~~~~~------~-~~~v~DiGGGSte~~~~~~~~--~~~~~Sl~lG~ 157 (300)
T TIGR03706 111 ARLIYLGVAHTLPI------A-DGLVVDIGGGSTELILGKDFE--PGEGVSLPLGC 157 (300)
T ss_pred HHHHHHHHHhCCCC------C-CcEEEEecCCeEEEEEecCCC--EeEEEEEccce
Confidence 99999998765431 1 238999999999999975432 22344455454
No 7
>PRK10854 exopolyphosphatase; Provisional
Probab=99.18 E-value=7.9e-11 Score=133.27 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=118.9
Q ss_pred CCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCC
Q 039222 20 PQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGG 99 (659)
Q Consensus 20 ~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G 99 (659)
|....+.+||.||...|+-||+.+++ . ++.++ .....+++..|
T Consensus 8 ~~~~~~A~IDIGSNSirL~I~e~~~~-~----------~~~i~--------------------------~~k~~vrLg~g 50 (513)
T PRK10854 8 PRPQEFAAVDLGSNSFHMVIARVVDG-A----------MQIIG--------------------------RLKQRVHLADG 50 (513)
T ss_pred CCCCEEEEEEeccchheEEEEEecCC-c----------EEEee--------------------------eeeEEEECCCC
Confidence 55667899999999999999996542 1 11111 22345778888
Q ss_pred CchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEc
Q 039222 100 TPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKII 179 (659)
Q Consensus 100 ls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VI 179 (659)
+...+..+ +++.+....+|+.-++.. +.++-+.+.+.||+.||. ++|++++++.|++. +|+ .++||
T Consensus 51 ~~~~g~Ls-~e~~~r~~~~L~~F~~~~--~~~~v~~v~~vATsAlRe--A~N~~~fl~~i~~~----tGl-----~i~vI 116 (513)
T PRK10854 51 LDSDNMLS-EEAMERGLNCLSLFAERL--QGFSPANVCIVGTHTLRQ--ALNATDFLKRAEKV----IPY-----PIEII 116 (513)
T ss_pred cCCCCCcC-HHHHHHHHHHHHHHHHHH--HhCCCCeEEEEehHHHHc--CcCHHHHHHHHHHH----HCC-----CeEEe
Confidence 87778777 666666666666666665 233456899999999998 89999999999998 664 49999
Q ss_pred cCCcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEccee
Q 039222 180 SGTEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVN 242 (659)
Q Consensus 180 sG~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~ 242 (659)
||+||+.|.+++|-..+.. ....-++|+|||||++++..+.. ......+.+|..+
T Consensus 117 sG~EEA~l~~~gv~~~l~~------~~~~lvvDIGGGStEl~~~~~~~--~~~~~S~~lG~vr 171 (513)
T PRK10854 117 SGNEEARLIFMGVEHTQPE------KGRKLVIDIGGGSTELVIGENFE--PILVESRRMGCVS 171 (513)
T ss_pred CHHHHHHHHHhhhhcccCC------CCCeEEEEeCCCeEEEEEecCCC--eeEeEEEecceee
Confidence 9999999999998554321 12356999999999999875432 2334444555543
No 8
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.16 E-value=1.4e-10 Score=130.67 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=116.4
Q ss_pred CceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCc
Q 039222 22 SSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTP 101 (659)
Q Consensus 22 ~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls 101 (659)
.+.+.+||.||...|+-||+..++ . |+.++ .....+++..|+.
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~-~----------~~~l~--------------------------~~k~~vrLg~g~~ 47 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAG-S----------IQTLA--------------------------RIKRKVRLAAGLD 47 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCC-c----------eEEee--------------------------cceeEEEccCCcC
Confidence 567899999999999999996432 1 11111 1233567888887
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccC
Q 039222 102 FMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISG 181 (659)
Q Consensus 102 ~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG 181 (659)
..+..+ +++.+....+|+.-++.. +.++-+-+.+.||+.+|. ++|++++++.|++. +++ .++||||
T Consensus 48 ~~g~Ls-~e~i~r~~~~L~~F~~~~--~~~~v~~i~~vATsAvRe--A~N~~~fl~~i~~~----tGl-----~ievIsG 113 (496)
T PRK11031 48 SDNALS-NEAMERGWQCLRLFAERL--QDIPPSQIRVVATATLRL--AVNADEFLAKAQEI----LGC-----PVQVISG 113 (496)
T ss_pred cCCCcC-HHHHHHHHHHHHHHHHHH--HhCCCCeEEEEEeHHHHc--CcCHHHHHHHHHHH----HCC-----CeEEeCH
Confidence 777777 566665555555555554 234456799999999998 89999999999998 665 4999999
Q ss_pred CcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEccee
Q 039222 182 TEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVN 242 (659)
Q Consensus 182 ~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~ 242 (659)
+||+.|.+++|-..+. ..+..-++|+|||||++++..+.. ..+...+.+|...
T Consensus 114 ~eEA~l~~~gv~~~l~------~~~~~lviDIGGGStEl~~~~~~~--~~~~~Sl~lG~vr 166 (496)
T PRK11031 114 EEEARLIYQGVAHTTG------GADQRLVVDIGGASTELVTGTGAQ--ATSLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHhhhhccC------CCCCEEEEEecCCeeeEEEecCCc--eeeeeEEeccchH
Confidence 9999999999865432 112356999999999999875432 2345566666543
No 9
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.2e-10 Score=128.66 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=120.0
Q ss_pred eeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCchh
Q 039222 24 TALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTPFM 103 (659)
Q Consensus 24 ~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls~~ 103 (659)
-+.+||.||.+.|+=|++-... .|+. ...+..++|+.+|+.+.
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~-----------~~~~--------------------------l~~~k~~vrLgegl~~~ 46 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPG-----------SFQV--------------------------LFREKRIVRLGEGLDAT 46 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCC-----------ccch--------------------------hhhhhhheehhcCcccc
Confidence 3678999999999999995420 1111 22556678999999999
Q ss_pred hcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCc
Q 039222 104 CRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTE 183 (659)
Q Consensus 104 ~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~e 183 (659)
+..+ ++|.+....+|..-.+..- .++..-|++.||+.+|. ..|.+++++.+++. .++ .++||||+|
T Consensus 47 g~L~-~eai~R~~~aL~~f~e~~~--~~~~~~v~~vATsA~R~--A~N~~eFl~rv~~~----~G~-----~ievIsGee 112 (492)
T COG0248 47 GNLS-EEAIERALSALKRFAELLD--GFGAEEVRVVATSALRD--APNGDEFLARVEKE----LGL-----PIEVISGEE 112 (492)
T ss_pred CCcC-HHHHHHHHHHHHHHHHHHh--hCCCCEEEEehhHHHHc--CCCHHHHHHHHHHH----hCC-----ceEEeccHH
Confidence 9999 7777777777777666663 34456699999999998 78999999999999 443 499999999
Q ss_pred ccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcce
Q 039222 184 EAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAV 241 (659)
Q Consensus 184 EG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~ 241 (659)
||.|..++|-..++. ....-++|+|||||++++..+.. ......+.+|..
T Consensus 113 EArl~~lGv~~~~~~------~~~~lv~DIGGGStEl~~g~~~~--~~~~~Sl~~G~v 162 (492)
T COG0248 113 EARLIYLGVASTLPR------KGDGLVIDIGGGSTELVLGDNFE--IGLLISLPLGCV 162 (492)
T ss_pred HHHHHHHHHHhcCCC------CCCEEEEEecCCeEEEEEecCCc--cceeEEeecceE
Confidence 999999999665543 23456899999999999976433 233344555543
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=98.86 E-value=2.7e-09 Score=111.73 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=86.7
Q ss_pred cccccCCCCCchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcc
Q 039222 91 SKEKGLPGGTPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFL 170 (659)
Q Consensus 91 ~~~~~~~~Gls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~ 170 (659)
...+++..|+...+..+ +++.+.+...|+.-++.. +.+..+.+++.||++||. +.|++.+++.|++. +++
T Consensus 17 ~~~vrLg~~~~~~g~i~-~e~i~r~~~~L~~f~~~~--~~~~v~~i~~vATsA~R~--A~N~~~~~~~i~~~----tGi- 86 (285)
T PF02541_consen 17 KEIVRLGEGVFETGRIS-EEAIERAIDALKRFKEIL--KDYGVEKIRAVATSALRE--AKNSDEFLDRIKKE----TGI- 86 (285)
T ss_dssp EEE--TTTTHHHHSSB--HHHHHHHHHHHHHHHHHH--HHTTGSEEEEEEEHHHHH--STTHHHHHHHHHHH----HSS-
T ss_pred eEEEEcccccccCCCcC-HHHHHHHHHHHHHHHHHH--HHCCCCEEEEEhhHHHHh--CcCHHHHHHHHHHH----hCC-
Confidence 34567888888888888 666666666666655555 334468899999999999 89999999999998 664
Q ss_pred cccceeEEccCCcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeec
Q 039222 171 CQRDWVKIISGTEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESK 225 (659)
Q Consensus 171 f~~~~~~VIsG~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~ 225 (659)
.++||||+|||.|.++++-.-+ . .....-++|+||||||+++..+
T Consensus 87 ----~i~iIsgeeEa~l~~~gv~~~l--~----~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 87 ----DIEIISGEEEARLSFLGVLSSL--P----PDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp -----EEEE-HHHHHHHHHHHHHHHS--T----TTSSEEEEEEESSEEEEEEEET
T ss_pred ----ceEEecHHHHHHHHHHHHHhhc--c----ccCCEEEEEECCCceEEEEEEC
Confidence 4999999999999999985443 1 1235679999999999998754
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=92.62 E-value=0.85 Score=47.93 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=78.6
Q ss_pred hhhHHHHHhhccCCCCCCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhh
Q 039222 4 SRIAEVISAASSRISAPQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQR 83 (659)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 83 (659)
+|+.+.-.+.-..+.+..+..++.||.||+..|+=+++.... .+...+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~~-----------~~~~~~~-------------------- 53 (267)
T PRK15080 5 PRLQKFAALINKTPVATESPLKVGVDLGTANIVLAVLDEDGQ-----------PVAGALE-------------------- 53 (267)
T ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCceEEEEEEcCCCC-----------EEEEEec--------------------
Confidence 344444333333444567888888999999999999754221 1111110
Q ss_pred cccCCCccccccCCCCCchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccC-cccHHHHHHHHHHH
Q 039222 84 ENAGSSFSKEKGLPGGTPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLP-TSDSKWLLDNAWSI 162 (659)
Q Consensus 84 ~~~~~~f~~~~~~~~Gls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp-~~~~~~IL~~v~~~ 162 (659)
....+..|. ..+.+.+...|+.+++.|++..... -.-++ | +++-=. ..++..+. +.
T Consensus 54 --------~~~~vr~G~----i~di~~a~~~i~~~~~~ae~~~g~~---i~~v~---~-~vp~~~~~~~~~~~~----~~ 110 (267)
T PRK15080 54 --------WADVVRDGI----VVDFIGAVTIVRRLKATLEEKLGRE---LTHAA---T-AIPPGTSEGDPRAII----NV 110 (267)
T ss_pred --------cccccCCCE----EeeHHHHHHHHHHHHHHHHHHhCCC---cCeEE---E-EeCCCCCchhHHHHH----HH
Confidence 011233332 2235899999999999998876433 12233 2 122111 12344433 33
Q ss_pred hhccCCcccccceeEEccCCcccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEee
Q 039222 163 LKKNSPFLCQRDWVKIISGTEEAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFES 224 (659)
Q Consensus 163 L~~~~~F~f~~~~~~VIsG~eEG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~ 224 (659)
++. .++. -..++++.. |+-+.++. ....++||||++|.++...
T Consensus 111 ~~~-aGl~----~~~ii~e~~-------A~a~~~~~-------~~~~vvDIGggtt~i~v~~ 153 (267)
T PRK15080 111 VES-AGLE----VTHVLDEPT-------AAAAVLGI-------DNGAVVDIGGGTTGISILK 153 (267)
T ss_pred HHH-cCCc----eEEEechHH-------HHHHHhCC-------CCcEEEEeCCCcEEEEEEE
Confidence 444 6653 233555332 22222221 1247999999999998754
No 12
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=75.31 E-value=1.7 Score=42.13 Aligned_cols=36 Identities=31% Similarity=0.683 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-cccccccccccccee
Q 039222 496 VILIVVFLISFIFLVCALSCV-NWTPRFFRRSYLPLF 531 (659)
Q Consensus 496 ~~~~~l~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~ 531 (659)
+.+.+.++++++||+|++=|+ .|+.|-..+..||=|
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkf 46 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHRDSTRFTLPKF 46 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeeccCccccchHHH
Confidence 333344445568888888888 899888888888866
No 13
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=67.65 E-value=23 Score=36.71 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcc
Q 039222 105 RKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEE 184 (659)
Q Consensus 105 ~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eE 184 (659)
..+.+.+...|+.+++.|++.+... .+-+.+--.|.+. ..+++++.++++. .++.. +.+ ..|
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~---~~~vvisVP~~~~---~~~r~a~~~a~~~-----aGl~~----~~l---i~e 97 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIE---LTHAATAIPPGTI---EGDPKVIVNVIES-----AGIEV----LHV---LDE 97 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCC---cCcEEEEECCCCC---cccHHHHHHHHHH-----cCCce----EEE---eeh
Confidence 3455889999999999998776432 3446666555553 4556655555444 45431 222 334
Q ss_pred cchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEccee
Q 039222 185 AYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVN 242 (659)
Q Consensus 185 G~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~ 242 (659)
..-++++. +. ....++|+||+.|.|+...... ..+...+.++|.+
T Consensus 98 p~Aaa~~~----~~-------~~~~vvDiGggtt~i~i~~~G~--i~~~~~~~~GG~~ 142 (239)
T TIGR02529 98 PTAAAAVL----QI-------KNGAVVDVGGGTTGISILKKGK--VIYSADEPTGGTH 142 (239)
T ss_pred HHHHHHHh----cC-------CCcEEEEeCCCcEEEEEEECCe--EEEEEeeecchHH
Confidence 44444332 11 1247999999999998753321 1233444555543
No 14
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=67.05 E-value=29 Score=37.53 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccchh
Q 039222 109 RVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAYYG 188 (659)
Q Consensus 109 ~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~y~ 188 (659)
+.+...|+.+++.|.+.+.... .+.++.+-.-+. .+..+++++.++++.. ++. .+.+|. |.
T Consensus 75 d~~~~~l~~~~~~~~~~l~~~~-~~~~vvitvP~~---~~~~~R~~l~~a~~~a-----g~~----~~~li~---ep--- 135 (335)
T PRK13929 75 DMTTDLLKQIMKKAGKNIGMTF-RKPNVVVCTPSG---STAVERRAISDAVKNC-----GAK----NVHLIE---EP--- 135 (335)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCCeEEEEcCCC---CCHHHHHHHHHHHHHc-----CCC----eeEeec---CH---
Confidence 6777788888888766543221 123555555443 3456778877765543 332 344443 33
Q ss_pred hhhhHHhhcccCCCCCCceeEEEecCCCceEEEEee
Q 039222 189 WTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFES 224 (659)
Q Consensus 189 WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~ 224 (659)
+++-+..|. .. ....++-++|+||+.|+++...
T Consensus 136 -~Aaa~~~g~-~~-~~~~~~lvvDiG~gtt~v~vi~ 168 (335)
T PRK13929 136 -VAAAIGADL-PV-DEPVANVVVDIGGGTTEVAIIS 168 (335)
T ss_pred -HHHHHhcCC-Cc-CCCceEEEEEeCCCeEEEEEEE
Confidence 222222221 11 1234567899999999999864
No 15
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=57.13 E-value=5.8 Score=49.57 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=25.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 039222 494 NPVILIVVFLISFIFLVCALSCVNWTPRFFRRSYL 528 (659)
Q Consensus 494 ~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~ 528 (659)
.|++++++-.+.-+||+++|+++.|||-||||.+-
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 45556665566666777777666899999999885
No 16
>PRK13410 molecular chaperone DnaK; Provisional
Probab=53.45 E-value=1.9e+02 Score=34.82 Aligned_cols=126 Identities=21% Similarity=0.144 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++..|+.|.+.|++..... -+-+.+---|.+- ..++++++++++. -+|. -+++|+...=+.
T Consensus 112 peel~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAAA 176 (668)
T PRK13410 112 PEELSAMILRKLADDASRYLGEP---VTGAVITVPAYFN---DSQRQATRDAGRI-----AGLE----VERILNEPTAAA 176 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----eEEEecchHHHH
Confidence 55667788899999898876432 2446666666543 4667777777654 4553 356766554433
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
+.|.+.. ....++-++||||+.+.|+...- .+..+.|.+++. ..+|-+..-.+++.+
T Consensus 177 -----layg~~~----~~~~~vlV~DlGgGT~Dvsv~~~-------------~~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 177 -----LAYGLDR----SSSQTVLVFDLGGGTFDVSLLEV-------------GNGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred -----HHhcccc----CCCCEEEEEECCCCeEEEEEEEE-------------cCCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 3343322 12457899999999999986432 222345555554 457776665555555
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+.+.
T Consensus 235 l~~~ 238 (668)
T PRK13410 235 LAEQ 238 (668)
T ss_pred HHHH
Confidence 5544
No 17
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=50.82 E-value=2.9e+02 Score=32.41 Aligned_cols=128 Identities=19% Similarity=0.133 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCccc
Q 039222 106 KWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEA 185 (659)
Q Consensus 106 ~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG 185 (659)
.|.+-++..|+.|.+.|++..... -+.+.+-.-|.+- ..++++++++++. -+|. -+++|+-..=+
T Consensus 106 ~peel~a~~L~~l~~~a~~~~~~~---v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAA 170 (595)
T TIGR02350 106 TPQEISAMILQKLKKDAEAYLGEK---VTEAVITVPAYFN---DAQRQATKDAGKI-----AGLE----VLRIINEPTAA 170 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCC---HHHHHHHHHHHHH-----cCCc----eEEEecchHHH
Confidence 355667778888888898877532 2445666555542 4667777777654 3543 35666655443
Q ss_pred chhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHH
Q 039222 186 YYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVV 264 (659)
Q Consensus 186 ~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la 264 (659)
. +.|.+..- ....++-++||||+++.++...- .+..+.|.++.. ..+|-+..-.++..
T Consensus 171 A-----l~y~~~~~---~~~~~vlV~D~Gggt~dvsv~~~-------------~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 171 A-----LAYGLDKS---KKDEKILVFDLGGGTFDVSILEI-------------GDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred H-----HHHhhccc---CCCcEEEEEECCCCeEEEEEEEe-------------cCCeEEEEEecCCcccCchhHHHHHHH
Confidence 3 34433221 22457889999999999986432 122344444443 34666655455544
Q ss_pred HHHhh
Q 039222 265 KLLKR 269 (659)
Q Consensus 265 ~Ll~~ 269 (659)
++++.
T Consensus 230 ~~~~~ 234 (595)
T TIGR02350 230 WLADE 234 (595)
T ss_pred HHHHH
Confidence 55443
No 18
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=49.19 E-value=1.3e+02 Score=34.89 Aligned_cols=128 Identities=22% Similarity=0.167 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCccc
Q 039222 106 KWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEA 185 (659)
Q Consensus 106 ~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG 185 (659)
.|.+.++..|+.|.+.|.+.+... -+.+.+-.-|.. ...+++++.++++. .+|. .+++|+-. +|
T Consensus 111 ~~~~~~~~~l~~l~~~a~~~~~~~---~~~~vitVPa~~---~~~qr~~~~~Aa~~-----agl~----~~~li~Ep-~A 174 (602)
T PF00012_consen 111 SPEELSAMILKYLKEMAEKYLGEK---VTDVVITVPAYF---TDEQRQALRDAAEL-----AGLN----VLRLINEP-TA 174 (602)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTSB---EEEEEEEE-TT-----HHHHHHHHHHHHH-----TT-E----EEEEEEHH-HH
T ss_pred eeecccccchhhhcccchhhcccc---cccceeeechhh---hhhhhhcccccccc-----cccc----cceeeccc-cc
Confidence 355677788888988898887533 233455544443 24567777777764 4553 36677522 22
Q ss_pred chhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEe-eccCcchhHHHHHHHH
Q 039222 186 YYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAY-SLSGYGLNDAFDKSVV 264 (659)
Q Consensus 186 ~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYsh-SyLgyGln~Ar~r~la 264 (659)
.++.|.+.+-. ...++-++|+||+++.++...-. +..+.+..+ .-..+|-+..-+++..
T Consensus 175 ----aa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~-------------~~~~~v~~~~~~~~lGG~~~D~~l~~ 234 (602)
T PF00012_consen 175 ----AALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFS-------------NGQFEVLATAGDNNLGGRDFDEALAE 234 (602)
T ss_dssp ----HHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEE-------------TTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred ----ccccccccccc---cccceeccccccceEeeeehhcc-------------cccccccccccccccccceecceeec
Confidence 24456544322 34688999999999999976422 112333333 3355676665555555
Q ss_pred HHHhh
Q 039222 265 KLLKR 269 (659)
Q Consensus 265 ~Ll~~ 269 (659)
++.+.
T Consensus 235 ~~~~~ 239 (602)
T PF00012_consen 235 YLLEK 239 (602)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 55443
No 19
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=48.11 E-value=2.7e+02 Score=33.00 Aligned_cols=126 Identities=18% Similarity=0.125 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++..|+.|.+.|++.+... -+-+.+---|.+- ..++++++++++. -+|. -+++|+...=+.
T Consensus 110 peel~a~iL~~lk~~ae~~~g~~---v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAAA 174 (627)
T PRK00290 110 PQEISAMILQKLKKDAEDYLGEK---VTEAVITVPAYFN---DAQRQATKDAGKI-----AGLE----VLRIINEPTAAA 174 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CceEEEEECCCCC---HHHHHHHHHHHHH-----cCCc----eEEEecchHHHH
Confidence 54667778888888898887533 2445565555543 4677777777764 3442 356666554443
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
+.|.+.. . ...++-++|+||+++.|+...- ++..+.+-+.+. ..+|-+..-.++..+
T Consensus 175 -----l~y~~~~---~-~~~~vlV~D~GggT~dvsv~~~-------------~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 175 -----LAYGLDK---K-GDEKILVYDLGGGTFDVSILEI-------------GDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred -----HHhhhcc---C-CCCEEEEEECCCCeEEEEEEEE-------------eCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 3444332 1 2357899999999999987432 122334444433 346665554444444
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+++.
T Consensus 233 ~~~~ 236 (627)
T PRK00290 233 LADE 236 (627)
T ss_pred HHHH
Confidence 4443
No 20
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=45.93 E-value=1.4e+02 Score=33.40 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=19.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHhCC
Q 039222 104 CRKWLRVFMAAIKPLLQWAEKQIP 127 (659)
Q Consensus 104 ~~~~~~~a~~~l~~LL~~A~~~IP 127 (659)
...+.+++.++|+.+++.|++...
T Consensus 50 ~I~d~~~~~~aI~~av~~ae~~~g 73 (420)
T PRK09472 50 GVNDLESVVKCVQRAIDQAELMAD 73 (420)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHhC
Confidence 344568999999999999997643
No 21
>CHL00094 dnaK heat shock protein 70
Probab=45.61 E-value=2.9e+02 Score=32.76 Aligned_cols=126 Identities=23% Similarity=0.178 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++..|+.|.+.|++..... -+-+.+---|.+ ...+++++.++++. -+|. -+++|+-..=+.
T Consensus 112 ~eei~a~iL~~l~~~ae~~lg~~---v~~~VItVPa~f---~~~qR~a~~~Aa~~-----AGl~----v~~li~EptAAA 176 (621)
T CHL00094 112 PEEISAQVLRKLVEDASKYLGET---VTQAVITVPAYF---NDSQRQATKDAGKI-----AGLE----VLRIINEPTAAS 176 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCC---CHHHHHHHHHHHHH-----cCCc----eEEEeccHHHHH
Confidence 55677788888998898876532 233555555554 24667777777653 4553 356665443332
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
+.|.+.. ....++-++|||||++.|+...- ++..+.|.+++. ..+|-+..-.++..+
T Consensus 177 -----lay~~~~----~~~~~vlV~DlGgGT~DvSv~~~-------------~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 177 -----LAYGLDK----KNNETILVFDLGGGTFDVSILEV-------------GDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred -----HHhcccc----CCCCEEEEEEcCCCeEEEEEEEE-------------cCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 3343321 12357889999999999987532 233345555554 457777665555545
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+++.
T Consensus 235 ~~~~ 238 (621)
T CHL00094 235 LIKE 238 (621)
T ss_pred HHHH
Confidence 5443
No 22
>PLN03184 chloroplast Hsp70; Provisional
Probab=44.41 E-value=3.2e+02 Score=32.88 Aligned_cols=126 Identities=21% Similarity=0.161 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++..|+.|.+.|++..... -+.+.+---|.+- ..+++++.++++. -+|. -+++|+--.=+
T Consensus 149 peei~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA- 212 (673)
T PLN03184 149 AEEISAQVLRKLVDDASKFLNDK---VTKAVITVPAYFN---DSQRTATKDAGRI-----AGLE----VLRIINEPTAA- 212 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCC---HHHHHHHHHHHHH-----CCCC----eEEEeCcHHHH-
Confidence 44667778888999898877532 3456666666553 4567777666654 4553 35666544332
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
++.|.+.. ....++-++||||+++.|+...- .+..+.|.+++. ..+|-+..-.++..+
T Consensus 213 ----Alayg~~~----~~~~~vlV~DlGgGT~DvSi~~~-------------~~~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 213 ----SLAYGFEK----KSNETILVFDLGGGTFDVSVLEV-------------GDGVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred ----HHHhhccc----CCCCEEEEEECCCCeEEEEEEEe-------------cCCEEEEEEecCCCccCHHHHHHHHHHH
Confidence 34444332 12357889999999999886432 222345555544 456776665555555
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+++.
T Consensus 272 ~~~~ 275 (673)
T PLN03184 272 LASN 275 (673)
T ss_pred HHHH
Confidence 5544
No 23
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=42.25 E-value=3.8e+02 Score=31.70 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCccc
Q 039222 106 KWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEA 185 (659)
Q Consensus 106 ~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG 185 (659)
.|.+-.+..|+.|.+.|++..... -+.+.+---|.+- ..+++++.++++. -+|. -+++|+.-.=+
T Consensus 105 ~p~ei~a~iL~~lk~~a~~~lg~~---v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 169 (599)
T TIGR01991 105 TPVEVSAEILKKLKQRAEESLGGD---LVGAVITVPAYFD---DAQRQATKDAARL-----AGLN----VLRLLNEPTAA 169 (599)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----ceEEecCHHHH
Confidence 354666778888888898877543 2445666555543 4667777777655 4553 35677655444
Q ss_pred chhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHH
Q 039222 186 YYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVV 264 (659)
Q Consensus 186 ~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la 264 (659)
.++ |.+.. ....++-++|+||+++.|+...-. +..+.|.+.+. ..+|-+..-+.+..
T Consensus 170 Ala-----y~~~~----~~~~~vlV~DlGgGT~DvSi~~~~-------------~~~~~vla~~gd~~lGG~d~D~~l~~ 227 (599)
T TIGR01991 170 AVA-----YGLDK----ASEGIYAVYDLGGGTFDVSILKLT-------------KGVFEVLATGGDSALGGDDFDHALAK 227 (599)
T ss_pred HHH-----Hhhcc----CCCCEEEEEEcCCCeEEEEEEEEc-------------CCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence 433 33322 124578899999999998864321 11233333332 35676666555555
Q ss_pred HHHhh
Q 039222 265 KLLKR 269 (659)
Q Consensus 265 ~Ll~~ 269 (659)
+++++
T Consensus 228 ~l~~~ 232 (599)
T TIGR01991 228 WILKQ 232 (599)
T ss_pred HHHHh
Confidence 55543
No 24
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=39.97 E-value=1.5e+02 Score=31.66 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.7
Q ss_pred eEEecCCCCccceeecc
Q 039222 25 ALSAGLSTEASSAHQFG 41 (659)
Q Consensus 25 ~~~idaGstgsr~~~~~ 41 (659)
.+.||-|||-||+..++
T Consensus 10 ~vgiDlGt~~t~i~~~~ 26 (335)
T PRK13930 10 DIGIDLGTANTLVYVKG 26 (335)
T ss_pred ceEEEcCCCcEEEEECC
Confidence 38899999999998864
No 25
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=39.49 E-value=5.7e+02 Score=30.36 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCccc
Q 039222 106 KWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEA 185 (659)
Q Consensus 106 ~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG 185 (659)
.|.+-.+..|+.|.+.|++..... -+-+.+---|.+- ..+++++.++++. -+|. -+++|+-..=+
T Consensus 125 ~p~ei~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 189 (616)
T PRK05183 125 SPVEVSAEILKALRQRAEETLGGE---LDGAVITVPAYFD---DAQRQATKDAARL-----AGLN----VLRLLNEPTAA 189 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----eEEEecchHHH
Confidence 354666778889999999887643 2445555555442 4566777666654 4553 46777766554
Q ss_pred chhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHH
Q 039222 186 YYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVV 264 (659)
Q Consensus 186 ~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la 264 (659)
.+++ .+.. ....++.++|+||+.+.|+...-. +..+.|-+++. ..+|-+..-.++..
T Consensus 190 Alay-----~~~~----~~~~~vlV~DlGGGT~DvSv~~~~-------------~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 190 AIAY-----GLDS----GQEGVIAVYDLGGGTFDISILRLS-------------KGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHHh-----hccc----CCCCEEEEEECCCCeEEEEEEEee-------------CCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 4433 3321 123578899999999988764321 12233333332 44676666555555
Q ss_pred HHHhh
Q 039222 265 KLLKR 269 (659)
Q Consensus 265 ~Ll~~ 269 (659)
++++.
T Consensus 248 ~~~~~ 252 (616)
T PRK05183 248 WILEQ 252 (616)
T ss_pred HHHHH
Confidence 55543
No 26
>PRK13411 molecular chaperone DnaK; Provisional
Probab=38.70 E-value=4.8e+02 Score=31.18 Aligned_cols=127 Identities=20% Similarity=0.152 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-.+..|+.|.+.|++.+... -+-+.+---|.+- ..+++++.++++. -+|. -+++|+--.=+
T Consensus 110 peei~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA- 173 (653)
T PRK13411 110 PQEISAMILQKLKQDAEAYLGEP---VTQAVITVPAYFT---DAQRQATKDAGTI-----AGLE----VLRIINEPTAA- 173 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---cHHHHHHHHHHHH-----cCCC----eEEEecchHHH-
Confidence 43445556888888888877432 2445565555542 4677887777664 3543 46666654333
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
|+.|.+... ....++.++||||+++.|+... +.+..+.|.+++. ..+|-+..=.++..+
T Consensus 174 ----Al~y~~~~~---~~~~~vlV~DlGgGT~dvsi~~-------------~~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 174 ----ALAYGLDKQ---DQEQLILVFDLGGGTFDVSILQ-------------LGDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred ----HHHhccccc---CCCCEEEEEEcCCCeEEEEEEE-------------EeCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 334433221 1235789999999999988642 2222345555544 346766555555555
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+++.
T Consensus 234 l~~~ 237 (653)
T PRK13411 234 LVEN 237 (653)
T ss_pred HHHH
Confidence 5543
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=33.21 E-value=5.5e+02 Score=30.78 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++.-|+.|.+.|++.+... -+-+.+---|-+- ..++++++++++. -+|. -+++|+...=+.
T Consensus 151 peel~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAAA 215 (663)
T PTZ00400 151 PSQIGAFVLEKMKETAESYLGRK---VKQAVITVPAYFN---DSQRQATKDAGKI-----AGLD----VLRIINEPTAAA 215 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CceEEEEECCCCC---HHHHHHHHHHHHH-----cCCc----eEEEeCchHHHH
Confidence 54566677788888888887533 2345555555442 4667777777665 3553 467777655544
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeeccccCCcceeEEEEcceeeeEEEeec-cCcchhHHHHHHHHH
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGAVNHHLSAYSL-SGYGLNDAFDKSVVK 265 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g~~y~LYshSy-LgyGln~Ar~r~la~ 265 (659)
++ |.+.. ....++-++|+||+++.|+...-. +..+.|.+++. ..+|-+..-.++..+
T Consensus 216 la-----y~~~~----~~~~~vlV~DlGgGT~DvSv~~~~-------------~g~~~v~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 216 LA-----FGMDK----NDGKTIAVYDLGGGTFDISILEIL-------------GGVFEVKATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred HH-----hcccc----CCCcEEEEEeCCCCeEEEEEEEec-------------CCeeEEEecccCCCcCHHHHHHHHHHH
Confidence 43 33221 123578999999999999864311 11233333333 356766655555555
Q ss_pred HHhh
Q 039222 266 LLKR 269 (659)
Q Consensus 266 Ll~~ 269 (659)
+++.
T Consensus 274 l~~~ 277 (663)
T PTZ00400 274 LIAE 277 (663)
T ss_pred HHHH
Confidence 5543
No 28
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.14 E-value=52 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccee
Q 039222 497 ILIVVFLISFIFLVCALSCVNWTPRFFRRSYLPLF 531 (659)
Q Consensus 497 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 531 (659)
+++++.+++++++++.+.|-+-..|.+|.-|-|+.
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI 70 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVI 70 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 34455555555555555444222344444555554
No 29
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=32.48 E-value=94 Score=36.22 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred ceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCCCch
Q 039222 23 STALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGGTPF 102 (659)
Q Consensus 23 ~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gls~ 102 (659)
..++-||-|+|.+|+-||.-.+.-.++ |+++. ++. .| -.+|
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e~l~--------~~~~~------------------i~~-----~~-----~~~~--- 46 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGELLS--------LAQKE------------------ITQ-----EF-----PKEG--- 46 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCccce--------eeeee------------------eee-----ec-----CCCC---
Confidence 345669999999999999966553332 22211 000 11 1222
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccc
Q 039222 103 MCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRR 146 (659)
Q Consensus 103 ~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRl 146 (659)
..+..+++.-+.+..|++.|.+..+...++..-+..-..++.|-
T Consensus 47 ~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~igv~~qr~ 90 (516)
T KOG2517|consen 47 WVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIGVVNQRE 90 (516)
T ss_pred eEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEEEEecCC
Confidence 22223389999999999999999887665555444444444443
No 30
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=31.85 E-value=45 Score=31.87 Aligned_cols=14 Identities=57% Similarity=0.710 Sum_probs=10.3
Q ss_pred ccccccCcCCCCcc
Q 039222 550 FKRWSPINSGDGRV 563 (659)
Q Consensus 550 ~~~~~~~~~~~~~~ 563 (659)
|..-++|++||.|-
T Consensus 67 FDl~~Ni~~~D~R~ 80 (128)
T PF09435_consen 67 FDLSSNINSGDSRA 80 (128)
T ss_pred cChhhcccCCCccc
Confidence 55667888888873
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=30.35 E-value=5.1e+02 Score=28.29 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=21.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHhCCCC
Q 039222 104 CRKWLRVFMAAIKPLLQWAEKQIPEH 129 (659)
Q Consensus 104 ~~~~~~~a~~~l~~LL~~A~~~IP~~ 129 (659)
...+.+++.+.|+.+++.|++..+..
T Consensus 42 ~I~d~~~~~~~i~~al~~~e~~~~~~ 67 (371)
T TIGR01174 42 VINDIEAAVGSIQRAIEAAELMAGCE 67 (371)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHhCCc
Confidence 44455899999999999999887654
No 32
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=29.96 E-value=2.5e+02 Score=30.54 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=22.9
Q ss_pred ceeEEEecCCCceEEEEeeccccCCcceeEEEEcc
Q 039222 206 ETFGSLDLGGSSLQVTFESKEHMHNETNLNLRIGA 240 (659)
Q Consensus 206 ~t~G~lDlGGaStQIaf~~~~~~~~e~~~~l~l~g 240 (659)
.+.-+||+|.+.|.|+-..+...-......+.+||
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG 177 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAG 177 (371)
T ss_pred CeEEEEECCCCeeEEEEEECCEEchhhheeccccH
Confidence 34558999999999997765543333344455554
No 33
>PTZ00288 glucokinase 1; Provisional
Probab=29.43 E-value=1.7e+02 Score=32.99 Aligned_cols=40 Identities=3% Similarity=-0.035 Sum_probs=31.3
Q ss_pred hHHHHHhhccCCCCCCCceeEEecCCCCccceeecccCCc
Q 039222 6 IAEVISAASSRISAPQSSTALSAGLSTEASSAHQFGFPNN 45 (659)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~idaGstgsr~~~~~f~~~ 45 (659)
+-+|..++.+..+....-+++-+|.|.|+||+.+|.+.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~DiGgt~~R~~~~~~~~~ 48 (405)
T PTZ00288 9 LEQLAEELKTDASWSSGPIFVGCDVGGTNARVGFAREVQH 48 (405)
T ss_pred HHHHHHHhccCcccccCCeEEEEEecCCceEEEEEeccCC
Confidence 4456666766666666778888999999999999998653
No 34
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=26.76 E-value=9.8e+02 Score=28.62 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccc
Q 039222 107 WLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAY 186 (659)
Q Consensus 107 ~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~ 186 (659)
|.+-++..|+.|.+.|++..... -+-+.+---|.+- ..+++++.++++. -+|. -+++|+-..=
T Consensus 117 peel~a~iL~~lk~~ae~~~g~~---v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptA-- 179 (653)
T PTZ00009 117 PEEISSMVLQKMKEIAEAYLGKQ---VKDAVVTVPAYFN---DSQRQATKDAGTI-----AGLN----VLRIINEPTA-- 179 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---cceeEEEeCCCCC---HHHHHHHHHHHHH-----cCCc----eeEEecchHH--
Confidence 44556668888888888876432 2445555555442 4667777776654 3553 3667765533
Q ss_pred hhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEee
Q 039222 187 YGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFES 224 (659)
Q Consensus 187 y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~ 224 (659)
.|+.|.+..-. ....++-++|+||+++.|+...
T Consensus 180 ---AAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 180 ---AAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred ---HHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEE
Confidence 33444433211 1235789999999999998743
No 35
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=25.71 E-value=2e+02 Score=33.29 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCceeEEecCCCCccceeecccCCcccccccccccccccccCcccccccccccccCCchhhhhcccCCCccccccCCCC
Q 039222 20 PQSSTALSAGLSTEASSAHQFGFPNNLRLSSSLQDFSTYRQLDSEEAVGLGYDRYAKQPNLLQRENAGSSFSKEKGLPGG 99 (659)
Q Consensus 20 ~~~~~~~~idaGstgsr~~~~~f~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G 99 (659)
..-.-+++++||.-|||+-+-.-+-++++- ++-|
T Consensus 94 ~~~~~a~~llaGgqgtRLg~~~pkg~~~~G----------------------------------------------~~~~ 127 (477)
T KOG2388|consen 94 AEGKVAVVLLAGGQGTRLGSSGPKGCYPIG----------------------------------------------LPSG 127 (477)
T ss_pred hcCcceEEEeccCceeeeccCCCcceeecC----------------------------------------------Cccc
Confidence 445678899999999999877766655441 0111
Q ss_pred CchhhcccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEc
Q 039222 100 TPFMCRKWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKII 179 (659)
Q Consensus 100 ls~~~~~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VI 179 (659)
-+-| +--++.|..++.-|...++.. ...|-|++..+.-. ++.++++..|.+|-+.+..+++.
T Consensus 128 ~slf-----~~qae~il~lq~~a~~~~~~~--~~I~w~ImtS~~T~-----------e~T~~~f~~~~~FGl~~~qv~~f 189 (477)
T KOG2388|consen 128 KSLF-----QIQAERILKLQELASMAVSDG--VDIPWYIMTSAFTH-----------EATLEYFESHKYFGLKPEQVTFF 189 (477)
T ss_pred cchh-----hhhHHHHHHHHHHHhhhhccC--CceEEEEecCCCcc-----------HHhHhHHhhcCCCCCChhHeeee
Confidence 1111 334567788888888888776 68999999877543 35566666767777776666665
Q ss_pred c
Q 039222 180 S 180 (659)
Q Consensus 180 s 180 (659)
.
T Consensus 190 ~ 190 (477)
T KOG2388|consen 190 Q 190 (477)
T ss_pred e
Confidence 4
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=25.34 E-value=2.7e+02 Score=30.20 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=43.6
Q ss_pred CCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccchhhhhhHHhhcccCCCCCCceeEEE
Q 039222 132 KTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAYYGWTALNYRTGMLGAIPKKETFGSL 211 (659)
Q Consensus 132 ~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~y~WiavNyllg~l~~~p~~~t~G~l 211 (659)
.+.||.+--... .+...++++.+.+.+.+.- . .+-++ ++.+.+-++. | ..+.-++
T Consensus 94 ~~~~vll~~p~~---~~~~~r~~~~e~lfE~~~~------~--~v~~~---~~~~~a~~~~----g-------~~~~lVV 148 (373)
T smart00268 94 EEHPVLLTEPPM---NPKSNREKILEIMFETFNF------P--ALYIA---IQAVLSLYAS----G-------RTTGLVI 148 (373)
T ss_pred ccCeeEEecCCC---CCHHHHHHHHHHhhccCCC------C--eEEEe---ccHHHHHHhC----C-------CCEEEEE
Confidence 457787743322 2345566666666554322 1 23333 2333333332 2 2344588
Q ss_pred ecCCCceEEEEeeccccCCcceeEEEEcc
Q 039222 212 DLGGSSLQVTFESKEHMHNETNLNLRIGA 240 (659)
Q Consensus 212 DlGGaStQIaf~~~~~~~~e~~~~l~l~g 240 (659)
|+|.++|.|+-..+...-.+....+.+||
T Consensus 149 DiG~~~t~v~pv~~G~~~~~~~~~~~~GG 177 (373)
T smart00268 149 DSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177 (373)
T ss_pred ecCCCcceEEEEECCEEchhhheeccCcH
Confidence 99999999997765433323333444343
No 37
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=25.29 E-value=48 Score=35.39 Aligned_cols=55 Identities=22% Similarity=0.415 Sum_probs=37.6
Q ss_pred ccccCCcccccccCCCCC--cceeecccCCCCC-Cce-eeeccCCCccceeecCCCcccc
Q 039222 571 VVGSQQRPFGLGHGLGGS--SIELVESPLYPST-SSV-SHSFSSNNLGQMQFDSGGMASF 626 (659)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 626 (659)
|.|.. ||++|-+||+.+ ++=++.---=..+ .+| +|+||+...-.+..+--.+|-|
T Consensus 78 I~G~p-kp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~HT~s~~~v~~v~iNG~~vgE~ 136 (266)
T cd08663 78 ISGSP-KPLGMMEGLDEGFDAALFVGYHARAGTPPGVLSHTYSGGAVRDVRLNGREVGET 136 (266)
T ss_pred EecCC-CCchhhhccccCcCEEEEEecCCCcCCCCCcccccccccceEEEEECCEEcCHH
Confidence 55654 999999999655 5555541110113 577 9999999998888876666654
No 38
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=23.85 E-value=1.3e+02 Score=31.03 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCcccch
Q 039222 110 VFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTEEAYY 187 (659)
Q Consensus 110 ~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~eEG~y 187 (659)
+-..=++-++++|.++=| ..-+.++|+.| |+ +..|..+.-..+- .++.+ .+++++|++++.+
T Consensus 75 Kd~TD~elAl~~a~e~g~-----d~i~i~Ga~GG-R~------DH~l~nl~ll~~~-~~~~~---~i~l~~~~n~~~~ 136 (212)
T COG1564 75 KDSTDLELALDEALERGA-----DEIVILGALGG-RL------DHALANLFLLLRP-AKSGF---KITLISGQNLITP 136 (212)
T ss_pred hccchHHHHHHHHHHcCC-----CEEEEEecCCC-hH------HHHHHHHHHHHhh-hhccc---eEEEecCCceEEE
Confidence 333445667777777665 34477889999 86 6777777666555 44443 4999999998654
No 39
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=23.15 E-value=3.2e+02 Score=29.56 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=51.2
Q ss_pred HHHHHHHHH-HHHhCCCCCCCCCeEEEEc--------cccccccCcccHHHHHHHHHHHhhccCCcccccceeEEccCCc
Q 039222 113 AAIKPLLQW-AEKQIPEHAHKTTSLFIYA--------TAGVRRLPTSDSKWLLDNAWSILKKNSPFLCQRDWVKIISGTE 183 (659)
Q Consensus 113 ~~l~~LL~~-A~~~IP~~~~~~TPv~l~A--------TAGMRlLp~~~~~~IL~~v~~~L~~~~~F~f~~~~~~VIsG~e 183 (659)
+-|+..+.+ |++.||-.. +..++=+. ..-|+.|=..-++++++...+.++. -++. ..+|+=+-
T Consensus 88 ~el~~~I~~Ea~~~iP~~~--~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~-aGL~-----~~~vDv~~ 159 (340)
T PF11104_consen 88 KELEEAIRWEAEQYIPFPL--EEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEE-AGLK-----PVAVDVEA 159 (340)
T ss_dssp HHHHHHHHHHHGGG-SS------EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHH-TT-E-----EEEEEEHH
T ss_pred HHHHHHHHHHHHhhCCCCh--hHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHH-cCCc-----eEEEeehH
Confidence 444555554 888898532 11111111 1123333333356788888888888 7753 55665333
Q ss_pred ccchhhhhhHHhhcccCCCCCCceeEEEecCCCceEEEEeecc
Q 039222 184 EAYYGWTALNYRTGMLGAIPKKETFGSLDLGGSSLQVTFESKE 226 (659)
Q Consensus 184 EG~y~WiavNyllg~l~~~p~~~t~G~lDlGGaStQIaf~~~~ 226 (659)
=+++-.+..+ ...+.......++.++|+|..+|++.+..+.
T Consensus 160 ~Al~r~~~~~--~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g 200 (340)
T PF11104_consen 160 FALARLFEFL--EPQLPDEEDAETVALVDIGASSTTVIIFQNG 200 (340)
T ss_dssp HHGGGGGHHH--HHTST----T-EEEEEEE-SS-EEEEEEETT
T ss_pred HHHHHHHHHH--HHhCCcccccceEEEEEecCCeEEEEEEECC
Confidence 3444333332 2222222234578999999999999986543
No 40
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=22.62 E-value=1.6e+02 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=16.4
Q ss_pred eeEEecCCCCccceeecc
Q 039222 24 TALSAGLSTEASSAHQFG 41 (659)
Q Consensus 24 ~~~~idaGstgsr~~~~~ 41 (659)
+++.||.|+|+.|+=+|.
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 467899999999999998
No 41
>PF13941 MutL: MutL protein
Probab=22.40 E-value=1.1e+02 Score=35.31 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-CCCCeEEEE--ccccccccCccc-HHHHHHHHHHHhhc
Q 039222 109 RVFMAAIKPLLQWAEKQIPEHA-HKTTSLFIY--ATAGVRRLPTSD-SKWLLDNAWSILKK 165 (659)
Q Consensus 109 ~~a~~~l~~LL~~A~~~IP~~~-~~~TPv~l~--ATAGMRlLp~~~-~~~IL~~v~~~L~~ 165 (659)
.++..-+..+++..++..|... .....++.- |-.|||+.=.-- .+--.++.|+.-..
T Consensus 39 ~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~SSAaGGLrmvv~Glv~~~Ta~AAk~AAlg 99 (457)
T PF13941_consen 39 GDVTIGLNNALEQLEEQTPASPDDGYDKVLACSSAAGGLRMVVIGLVPDLTAEAAKRAALG 99 (457)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcccCceEEEEECCCCCcceEEEEecCHHHHHHHHHHHHhc
Confidence 5788888888888888888644 333333333 334899843322 23333444444333
No 42
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=22.31 E-value=7.2e+02 Score=27.18 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=38.1
Q ss_pred cCcccH-HHHHHHHHHHhhccCCcccccc-------eeEEccCCcccchhhhhhHHhh-cccCC-CCCCceeEEEecCCC
Q 039222 147 LPTSDS-KWLLDNAWSILKKNSPFLCQRD-------WVKIISGTEEAYYGWTALNYRT-GMLGA-IPKKETFGSLDLGGS 216 (659)
Q Consensus 147 Lp~~~~-~~IL~~v~~~L~~~~~F~f~~~-------~~~VIsG~eEG~y~WiavNyll-g~l~~-~p~~~t~G~lDlGGa 216 (659)
||.+.- .+--+.+++.|.....+.+.+. .|.|+ .|++-+++++..-- +.+.. ......+++||+|++
T Consensus 119 LPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~---pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~ 195 (344)
T PRK13917 119 MPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVV---AQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSG 195 (344)
T ss_pred CCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEe---cccHHHHHHHHhcccCcccchhcccCcEEEEEcCCC
Confidence 676652 2223556667654333333211 23333 46776766442211 11110 112346799999999
Q ss_pred ceEEEEe
Q 039222 217 SLQVTFE 223 (659)
Q Consensus 217 StQIaf~ 223 (659)
.|-++..
T Consensus 196 TtD~~v~ 202 (344)
T PRK13917 196 TTDLDTI 202 (344)
T ss_pred cEEEEEE
Confidence 9998865
No 43
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=22.11 E-value=44 Score=35.98 Aligned_cols=11 Identities=73% Similarity=1.709 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcc
Q 039222 507 IFLVCALSCVNW 518 (659)
Q Consensus 507 ~ll~~~~~~~~~ 518 (659)
|||+||| ||.|
T Consensus 9 VLLVCAL-CVLW 19 (291)
T PTZ00459 9 VLLVCAL-CVLW 19 (291)
T ss_pred HHHHHHH-HHHh
Confidence 5777887 7767
No 44
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.76 E-value=92 Score=29.90 Aligned_cols=12 Identities=58% Similarity=0.855 Sum_probs=8.0
Q ss_pred ccccccccccce
Q 039222 519 TPRFFRRSYLPL 530 (659)
Q Consensus 519 ~~~~~~~~~~~~ 530 (659)
.+|+.||..|||
T Consensus 122 ~yr~~r~~~~~~ 133 (139)
T PHA03099 122 VYRFTRRTKLPL 133 (139)
T ss_pred hheeeecccCch
Confidence 445567777886
No 45
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=21.66 E-value=1.6e+02 Score=30.44 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=14.3
Q ss_pred EEecCCCCccceeecc
Q 039222 26 LSAGLSTEASSAHQFG 41 (659)
Q Consensus 26 ~~idaGstgsr~~~~~ 41 (659)
+=||.|||++++-+|.
T Consensus 3 lGIDiGtts~K~vl~d 18 (248)
T TIGR00241 3 LGIDSGSTTTKMVLME 18 (248)
T ss_pred EEEEcChhheEEEEEc
Confidence 3499999999999997
No 46
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=20.65 E-value=1.1e+02 Score=31.65 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEccccccc
Q 039222 106 KWLRVFMAAIKPLLQWAEKQIPEHAHKTTSLFIYATAGVRR 146 (659)
Q Consensus 106 ~~~~~a~~~l~~LL~~A~~~IP~~~~~~TPv~l~ATAGMRl 146 (659)
...+++.+.|+..++.+.+..+.....-+-+ ..+.||+=.
T Consensus 35 ~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~-~~g~aG~~~ 74 (271)
T PF01869_consen 35 VGFEEAMENIKEAIEEALSQAGLSPDDIAAI-CIGAAGYGR 74 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCCEE-EEEEEEEEE
T ss_pred CCcchhhhHHHHHHHHHHHHcCCCcccccee-eeeEeeecC
Confidence 3347888999999999999888765433333 344455433
Done!