BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039224
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P37574|YACP_BACSU Uncharacterized protein YacP OS=Bacillus subtilis (strain 168)
           GN=yacP PE=4 SV=1
          Length = 170

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 5/131 (3%)

Query: 42  VPVLLVDGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDA-LMSG 100
           + +LLVDGYN+ G WP+L++       + AR  LI+++ E+      +V+VVFDA L+ G
Sbjct: 1   MDILLVDGYNMIGAWPQLKD-LKANSFEEARDVLIQKMAEYQSYTGNRVIVVFDAHLVKG 59

Query: 101 LPTHKEEFIGVDIVFPGET-CADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAF 159
           L   K+    V+++F  E   AD  IEK   AL  +   ++ V TSD+ +Q A +G GA 
Sbjct: 60  LE-KKQTNHRVEVIFTKENETADERIEKLAQALN-NIATQIHVATSDYTEQWAIFGQGAL 117

Query: 160 VWSSKALVSEV 170
             S++ L+ EV
Sbjct: 118 RKSARELLREV 128


>sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
          thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
          10044 / NBRC 100330 / Delta H) GN=rpoA2 PE=3 SV=1
          Length = 451

 Score = 32.3 bits (72), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 1  MPRPSTSYRRKKVEKEEL--PEDTELYRFFSYIYNTNQGIDN 40
          +P P   Y  +  ++E+L  PE  E+ R FS I   NQG+D+
Sbjct: 19 LPDPVVEYVARIADEEKLKEPELQEMVRLFSRIAERNQGLDD 60


>sp|P95189|HISN_MYCTU Histidinol-phosphatase OS=Mycobacterium tuberculosis GN=hisN PE=1
           SV=2
          Length = 260

 Score = 31.2 bits (69), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 128 EIVALREDGCPKVWVVTSDHLQQH--AAYGAGAFV 160
            ++AL EDG P V VV++  LQ+   AA G GAF 
Sbjct: 100 SLIALLEDGVPSVGVVSAPALQRRWWAARGRGAFA 134


>sp|Q05533|INM2_YEAST Inositol monophosphatase 2 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=INM2 PE=1 SV=1
          Length = 292

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 130 VALREDGCPKVWVVTSDHLQQ--HAAYGAGAFVWSSKALVSEVSLII 174
           + L E G P V VV + HL Q  HA+ G GAF+   +  VS+  LI+
Sbjct: 113 LGLAEMGKPVVGVVFNPHLNQLFHASKGNGAFLNDQEIKVSKRPLIL 159


>sp|A4RW83|SECA_OSTLU Protein translocase subunit SecA, chloroplastic OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=secA PE=3 SV=1
          Length = 932

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 78  ELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGETCADAWIEKEIVALREDGC 137
           E+ EFS I E++V VV     +  P  +E+    D+VF  ET     + KEI  + + G 
Sbjct: 371 EITEFSNIYELEVAVV----PTNRPVSRED--STDVVFRSETGKWNAVRKEISRMHKKGR 424

Query: 138 PKVWVVTS 145
           P +   TS
Sbjct: 425 PVLVGTTS 432


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,034,059
Number of Sequences: 539616
Number of extensions: 2930399
Number of successful extensions: 6576
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6573
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)