Query 039224
Match_columns 179
No_of_seqs 105 out of 474
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7i_A Ribonuclease H, RNAse H 97.6 3.7E-05 1.3E-09 67.0 4.4 120 40-161 11-170 (305)
2 1exn_A 5'-exonuclease, 5'-nucl 97.5 4.3E-05 1.5E-09 65.9 2.5 106 41-153 18-159 (290)
3 1b43_A Protein (FEN-1); nuclea 96.8 0.0023 7.7E-08 55.4 7.0 37 110-152 143-179 (340)
4 1a76_A Flap endonuclease-1 pro 96.6 0.0045 1.5E-07 53.2 7.0 37 110-152 143-179 (326)
5 1bgx_T TAQ DNA polymerase; DNA 96.4 0.0003 1E-08 68.1 -1.9 111 40-153 10-149 (832)
6 2izo_A FEN1, flap structure-sp 95.6 0.01 3.5E-07 51.5 4.5 39 109-153 139-177 (346)
7 3v32_B Ribonuclease ZC3H12A; r 95.5 0.005 1.7E-07 50.0 2.0 93 41-148 23-135 (185)
8 3ix7_A Uncharacterized protein 95.4 0.024 8.1E-07 43.7 5.4 47 118-170 83-129 (134)
9 1ul1_X Flap endonuclease-1; pr 94.9 0.027 9.2E-07 49.5 5.1 38 110-153 148-185 (379)
10 3qe9_Y Exonuclease 1; exonucle 94.9 0.024 8.1E-07 49.7 4.5 36 110-151 141-176 (352)
11 3v33_A Ribonuclease ZC3H12A; r 94.9 0.0069 2.4E-07 50.6 1.0 93 41-148 23-135 (223)
12 2dok_A Telomerase-binding prot 93.9 0.11 3.7E-06 41.0 6.0 53 118-170 116-183 (186)
13 3q8k_A Flap endonuclease 1; he 93.7 0.044 1.5E-06 47.7 3.6 38 110-153 148-185 (341)
14 3ory_A Flap endonuclease 1; hy 93.5 0.047 1.6E-06 48.0 3.4 38 110-153 157-194 (363)
15 3i8o_A KH domain-containing pr 92.1 0.21 7.3E-06 38.8 5.1 87 58-162 41-129 (142)
16 1rxw_A Flap structure-specific 86.3 0.37 1.3E-05 41.3 2.7 39 109-153 141-179 (336)
17 2lcq_A Putative toxin VAPC6; P 85.6 0.91 3.1E-05 34.9 4.4 46 119-170 83-128 (165)
18 1v96_A Hypothetical protein PH 85.5 1.2 4.1E-05 32.6 4.9 48 119-173 95-143 (149)
19 1o4w_A PIN (PILT N-terminus) d 75.8 4 0.00014 30.3 4.9 40 119-165 98-137 (147)
20 2ebu_A Replication factor C su 67.6 23 0.00077 25.9 7.2 65 107-172 22-97 (112)
21 2k6g_A Replication factor C su 66.1 19 0.00064 26.1 6.5 65 107-172 32-107 (109)
22 4id3_A DNA repair protein REV1 65.3 8.9 0.0003 25.6 4.3 67 106-172 6-80 (92)
23 3tqd_A 3-deoxy-manno-octuloson 63.1 13 0.00045 30.3 5.7 38 124-161 36-73 (256)
24 2qip_A Protein of unknown func 61.3 9.2 0.00031 29.0 4.2 101 40-153 9-125 (165)
25 4fcu_A 3-deoxy-manno-octuloson 60.4 13 0.00046 30.1 5.3 38 124-161 28-66 (253)
26 3oam_A 3-deoxy-manno-octuloson 59.2 17 0.0006 28.9 5.7 38 124-161 29-66 (252)
27 1h7e_A 3-deoxy-manno-octuloson 57.6 20 0.0007 27.7 5.8 40 123-162 28-68 (245)
28 1l7b_A DNA ligase; BRCT, autos 55.5 17 0.00059 25.5 4.5 67 107-173 7-81 (92)
29 2ftc_A Mitochondrial ribosomal 55.5 11 0.00038 29.9 3.9 34 139-172 34-67 (189)
30 3k8d_A 3-deoxy-manno-octuloson 54.3 23 0.00077 29.0 5.7 38 124-161 45-82 (264)
31 1vic_A 3-deoxy-manno-octuloson 52.3 27 0.00091 27.6 5.7 39 123-161 28-66 (262)
32 3ir9_A Peptide chain release f 52.0 33 0.0011 26.6 6.0 36 123-159 120-156 (166)
33 3l3e_A DNA topoisomerase 2-bin 51.1 58 0.002 22.5 6.9 66 107-172 15-91 (107)
34 1qwj_A Cytidine monophospho-N- 51.0 25 0.00085 27.3 5.3 38 124-161 30-68 (229)
35 2w5v_A Alkaline phosphatase; p 48.3 9.8 0.00034 32.3 2.6 28 119-147 275-302 (375)
36 3k6q_A Putative ligand binding 46.4 6.2 0.00021 30.6 1.0 36 48-84 61-96 (139)
37 1ezi_A CMP-N-acetylneuraminic 45.1 36 0.0012 26.1 5.3 39 123-161 30-69 (228)
38 1v8p_A Hypothetical protein PA 45.0 26 0.0009 26.5 4.4 42 120-171 115-156 (158)
39 2gso_A Phosphodiesterase-nucle 42.5 12 0.00042 31.4 2.3 31 119-149 189-221 (393)
40 3lxq_A Uncharacterized protein 40.8 13 0.00043 32.1 2.2 30 120-149 277-308 (450)
41 3m7v_A Phosphopentomutase; str 39.1 14 0.00047 30.2 2.0 27 119-148 317-343 (413)
42 2w8d_A Processed glycerol phos 38.7 19 0.00065 31.1 3.0 29 120-148 230-260 (436)
43 3snk_A Response regulator CHEY 37.1 94 0.0032 20.9 7.8 93 71-173 26-130 (135)
44 2w5q_A Processed glycerol phos 36.5 22 0.00075 30.5 3.0 29 120-148 230-260 (424)
45 3f6p_A Transcriptional regulat 35.8 94 0.0032 20.5 6.2 92 72-174 15-117 (120)
46 2qzu_A Putative sulfatase YIDJ 35.3 26 0.0009 30.5 3.4 30 120-149 285-316 (491)
47 3gt7_A Sensor protein; structu 34.5 1.1E+02 0.0037 21.3 6.2 96 71-174 19-125 (154)
48 1x52_A Pelota homolog, CGI-17; 34.5 65 0.0022 23.7 5.0 38 120-159 72-109 (124)
49 2d8m_A DNA-repair protein XRCC 34.3 85 0.0029 22.6 5.6 66 107-172 22-95 (129)
50 2qxy_A Response regulator; reg 34.1 1.1E+02 0.0036 20.7 7.5 52 120-174 61-119 (142)
51 1dlw_A Hemoglobin; oxygen stor 33.8 28 0.00097 24.4 2.8 71 50-134 20-91 (116)
52 2vqr_A Putative sulfatase; pho 33.4 20 0.00067 31.8 2.2 30 120-149 325-356 (543)
53 1kzy_C Tumor suppressor P53-bi 33.3 1E+02 0.0035 24.9 6.5 66 107-172 155-240 (259)
54 3hv2_A Response regulator/HD d 32.4 1.2E+02 0.0042 20.8 6.1 52 120-174 72-131 (153)
55 1fsu_A N-acetylgalactosamine-4 32.4 21 0.00073 31.1 2.3 31 119-149 230-262 (492)
56 1auk_A Arylsulfatase A; cerebr 31.8 22 0.00076 31.2 2.3 31 119-149 234-266 (489)
57 1hdh_A Arylsulfatase; hydrolas 31.1 27 0.00091 30.8 2.7 31 119-149 288-320 (536)
58 3b5q_A Putative sulfatase YIDJ 31.1 22 0.00076 31.1 2.2 31 119-149 255-287 (482)
59 2nrr_A Uvrabc system protein C 30.9 9 0.00031 30.2 -0.4 35 6-49 48-87 (159)
60 1s69_A Cyanoglobin, hemoglobin 30.9 33 0.0011 24.3 2.8 71 50-134 22-97 (124)
61 3ed4_A Arylsulfatase; structur 30.6 27 0.00092 30.3 2.6 29 120-148 276-306 (502)
62 3czp_A Putative polyphosphate 30.2 51 0.0017 29.9 4.4 74 68-143 22-106 (500)
63 1qkk_A DCTD, C4-dicarboxylate 29.0 1.4E+02 0.0048 20.5 7.6 93 71-174 15-119 (155)
64 1i2a_A 50S ribosomal protein L 28.5 65 0.0022 25.9 4.4 33 138-172 58-90 (219)
65 3aq9_A Group 1 truncated hemog 27.9 55 0.0019 23.1 3.5 70 50-134 25-96 (121)
66 3hzh_A Chemotaxis response reg 27.9 93 0.0032 21.7 4.8 60 111-173 84-154 (157)
67 2rjn_A Response regulator rece 27.6 1.5E+02 0.0051 20.3 6.0 94 71-174 19-124 (154)
68 1du5_A Zeamatin; beta sandwich 27.6 8.6 0.0003 31.4 -1.0 11 43-53 97-107 (206)
69 3q3q_A Alkaline phosphatase; h 27.4 41 0.0014 31.0 3.3 30 119-148 318-347 (565)
70 2nrt_A Uvrabc system protein C 26.6 13 0.00044 30.6 -0.2 48 6-76 53-105 (220)
71 1z3q_A Thaumatin-like protein; 26.4 9.3 0.00032 31.1 -1.0 10 43-52 96-105 (200)
72 2ahn_A Thaumatin-like protein; 26.0 9.6 0.00033 31.4 -1.0 11 43-53 105-115 (222)
73 4fdi_A N-acetylgalactosamine-6 26.0 36 0.0012 29.9 2.6 76 73-148 185-264 (502)
74 2vhk_A Thaumatin-I; kinetics o 25.9 9.6 0.00033 31.1 -1.0 11 43-53 101-111 (206)
75 1aun_A PR-5D; antifungal prote 25.3 10 0.00034 31.0 -1.0 10 43-52 98-107 (208)
76 1p49_A Steryl-sulfatase; stero 25.3 33 0.0011 30.6 2.3 31 119-149 292-324 (562)
77 3a52_A Cold-active alkaline ph 25.0 47 0.0016 29.2 3.2 28 120-148 244-271 (400)
78 3l7o_A Ribose-5-phosphate isom 25.0 85 0.0029 25.5 4.5 52 113-165 21-73 (225)
79 2wwq_5 50S ribosomal protein L 24.9 40 0.0014 27.6 2.6 34 138-172 73-106 (234)
80 2qr3_A Two-component system re 24.8 1.6E+02 0.0053 19.6 6.0 52 120-174 66-124 (140)
81 2bmm_A Thermostable hemoglobin 24.7 33 0.0011 24.4 1.8 75 50-134 21-96 (123)
82 2h1c_A Trafficking protein B; 24.7 46 0.0016 23.0 2.5 36 119-164 101-137 (139)
83 3kto_A Response regulator rece 24.6 1.6E+02 0.0056 19.7 8.5 95 71-175 18-125 (136)
84 1mio_B Nitrogenase molybdenum 24.3 45 0.0015 29.3 2.9 51 67-117 291-342 (458)
85 1r44_A D-alanyl-D-alanine dipe 23.9 65 0.0022 25.8 3.6 29 70-100 45-73 (202)
86 3to5_A CHEY homolog; alpha(5)b 23.8 1.8E+02 0.006 21.0 5.8 63 110-173 57-130 (134)
87 3oaa_G ATP synthase gamma chai 23.6 81 0.0028 26.3 4.3 48 48-98 128-175 (286)
88 2wp8_J Exosome complex exonucl 23.5 98 0.0034 30.5 5.4 125 40-170 59-201 (977)
89 2gkg_A Response regulator homo 23.5 1.5E+02 0.005 19.1 4.9 54 120-174 64-123 (127)
90 3e20_C Eukaryotic peptide chai 23.4 1.1E+02 0.0037 27.3 5.2 36 123-159 380-416 (441)
91 1srr_A SPO0F, sporulation resp 23.2 1.6E+02 0.0055 19.2 5.3 51 120-173 61-118 (124)
92 2gkm_A TRHBN, hemoglobin-like 22.3 49 0.0017 24.1 2.4 71 50-134 33-104 (136)
93 2qi2_A Pelota, cell division p 21.7 1.3E+02 0.0046 25.7 5.4 34 125-159 297-330 (347)
94 3rhf_A Putative polyphosphate 21.4 68 0.0023 27.3 3.4 56 87-144 73-139 (289)
95 3cnb_A DNA-binding response re 21.4 1.5E+02 0.0051 19.7 4.7 55 120-175 68-129 (143)
96 3oqp_A Putative isochorismatas 21.2 1.8E+02 0.0062 22.7 5.7 18 155-172 171-188 (211)
97 2fe1_A Conserved hypothetical 21.2 65 0.0022 23.6 2.9 34 119-158 122-155 (156)
98 3aek_A Light-independent proto 20.8 40 0.0014 29.5 1.9 89 68-160 287-380 (437)
99 3jte_A Response regulator rece 20.1 2E+02 0.007 19.2 5.8 52 120-174 63-121 (143)
No 1
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=97.64 E-value=3.7e-05 Score=67.03 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCccEEEEecccccCcc--ccchhhhcCCCHHHHHHHHHHHHHhccc----cCCceEEEEEcCCC-C-------CC----
Q 039224 40 NAVPVLLVDGYNVCGYW--PKLENHFIKGRLDVARQKLIEELVEFSM----IREVKVVVVFDALM-S-------GL---- 101 (179)
Q Consensus 40 ~~~~~lIVDGYNvI~a~--p~L~~~~~~~~Le~AR~~Li~~L~~y~~----~~g~~V~VVFDa~~-~-------~~---- 101 (179)
+++.++||||.+++++. +.+.. -...+....|..+++.|..... .+--.++|+||+.. . +.
T Consensus 11 ~~~~llLIDgssl~~ra~~~~f~~-~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKan 89 (305)
T 3h7i_A 11 YKEGICLIDFSQIALSTALVNFPD-KEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKN 89 (305)
T ss_dssp SSCCEEEEEHHHHHHHHHHHHSCS-SSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHH
T ss_pred cCCCEEEEeccHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccC
Confidence 36689999999999874 22322 1234666777766666666543 35567999999751 1 00
Q ss_pred -CCCcee---------------------ecCeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCce
Q 039224 102 -PTHKEE---------------------FIGVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAF 159 (179)
Q Consensus 102 -~~~~~~---------------------~~gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~ 159 (179)
+..++. .-|+.++=...-.||++|--++......| .+|+|||+|+...+.+..-|..
T Consensus 90 R~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g-~~V~IvSgDKDl~QLv~~~~V~ 168 (305)
T 3h7i_A 90 RGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEG-HKILIISSDGDFTQLHKYPNVK 168 (305)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTT-CCEEEECSSCCCGGGGGSSSEE
T ss_pred CCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCC-CcEEEEeCCCCccccccCCCeE
Confidence 001111 13677665544599999999999988764 6899999999998888533444
Q ss_pred Ee
Q 039224 160 VW 161 (179)
Q Consensus 160 ~i 161 (179)
.+
T Consensus 169 ~~ 170 (305)
T 3h7i_A 169 QW 170 (305)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=97.46 E-value=4.3e-05 Score=65.89 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=68.5
Q ss_pred CccEEEEecccccCccccchhhhcCCCHHHHHHHHHHHHHhcccc-CCceEEEEEcCCCC-------C-CCC----Cc--
Q 039224 41 AVPVLLVDGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMI-REVKVVVVFDALMS-------G-LPT----HK-- 105 (179)
Q Consensus 41 ~~~~lIVDGYNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~-~g~~V~VVFDa~~~-------~-~~~----~~-- 105 (179)
.+++++|||+|+++..=. .. .... |...++.+|.+.... +--.++||||+..+ + -.. .+
T Consensus 18 ~~~lllIDg~~llyRa~~-~~--~G~p---av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~ 91 (290)
T 1exn_A 18 RRNLMIVDGTNLGFRFKH-NN--SKKP---FASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQ 91 (290)
T ss_dssp -CEEEEEEHHHHHHHHHH-HC--SSSC---CHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHT
T ss_pred CCCEEEEECcHHHHHHHh-CC--CCch---HHHHHHHHHHHHHHHcCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCcc
Confidence 347999999999976421 11 1112 556666666655432 33468999997431 1 010 11
Q ss_pred -----e---ee-------------cCeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 106 -----E---EF-------------IGVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 106 -----~---~~-------------~gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
+ .. -||.++=.+.-.||+.|--++......| ..|+|||+|+...+.+
T Consensus 92 ~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G-~~v~IvS~DkDl~Qlv 159 (290)
T 1exn_A 92 RTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLY-DHVWLISTDGDWDTLL 159 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGS-SCEEEECSCGGGGGGC
T ss_pred ccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCC-CcEEEEeCCCChhhcC
Confidence 1 01 4777754433499999999999887654 5899999999998876
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=96.83 E-value=0.0023 Score=55.41 Aligned_cols=37 Identities=14% Similarity=-0.076 Sum_probs=29.4
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHA 152 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~ 152 (179)
||.++-++ ..||+.|--+++.- ..+.|+|+|...-..
T Consensus 143 gip~i~ap-~EADa~iA~La~~g-----~~~~i~S~D~D~l~~ 179 (340)
T 1b43_A 143 GIPIVQAP-SEGEAQAAYMAAKG-----SVYASASQDYDSLLF 179 (340)
T ss_dssp TCCEEECS-SCHHHHHHHHHHHT-----SSSEEECSSSHHHHT
T ss_pred CCcEEEcC-hhHHHHHHHHHHcC-----CEEEEEccCCCccee
Confidence 78888887 89999998877642 457899999988654
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=96.58 E-value=0.0045 Score=53.23 Aligned_cols=37 Identities=19% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHA 152 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~ 152 (179)
||.++-++. .||+.|--++.. | ..+.|+|+|..+-..
T Consensus 143 gi~~i~apg-EAD~~ia~La~~----g-~~~~I~S~D~Dll~~ 179 (326)
T 1a76_A 143 GIPYVEAPS-EGEAQASYMAKK----G-DVWAVVSQDYDALLY 179 (326)
T ss_dssp TCCEEECSS-CHHHHHHHHHHT----T-SSSEEECSSSGGGGG
T ss_pred CCCeEECCc-cHHHHHHHHHHC----C-CEEEEecCCccccee
Confidence 788887776 999988887764 2 468899999877555
No 5
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=96.36 E-value=0.0003 Score=68.14 Aligned_cols=111 Identities=23% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCccEEEEecccccC----ccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCC------------CCC
Q 039224 40 NAVPVLLVDGYNVCG----YWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSG------------LPT 103 (179)
Q Consensus 40 ~~~~~lIVDGYNvI~----a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~------------~~~ 103 (179)
.+.++++|||++++| +.|.|... .+.--.|-..++.+|.+.....+..++|||||.... ...
T Consensus 10 ~~~~~llIDg~~~l~ra~~a~~~l~~~--~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~ 87 (832)
T 1bgx_T 10 PKGRVLLVDGHHLAYRTFHALKGLTTS--RGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAP 87 (832)
T ss_dssp CCTTSCCCCCSTHHHHTTSSCTTCBCS--SSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCC
T ss_pred hCCCEEEEEChHHHHHHHhcCCccccC--CCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhcccc
Confidence 344699999999994 34544321 111111333455555554443337899999985321 000
Q ss_pred Cceee-------------cCeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 104 HKEEF-------------IGVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 104 ~~~~~-------------~gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
.++.. -||.++=.+.-.||+.|--++......| ..+.|||+|+...+.+
T Consensus 88 ~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G-~~v~IvS~DkDllql~ 149 (832)
T 1bgx_T 88 TPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEG-YEVRILTADKDLYQLL 149 (832)
T ss_dssp CCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHT-CCBCCCCSSTTCCTTC
T ss_pred ChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcC-CeEEEEeCCCChhhcC
Confidence 11110 2676665544499999999998876543 5799999999887664
No 6
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.01 Score=51.52 Aligned_cols=39 Identities=15% Similarity=-0.041 Sum_probs=29.5
Q ss_pred cCeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 109 IGVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 109 ~gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
-||.++-++. .||+.|--++.. | ..+.|+|+|..+-..+
T Consensus 139 ~gi~~i~ap~-EADa~ia~La~~----g-~~~~I~S~D~D~l~~~ 177 (346)
T 2izo_A 139 MGIPIVQAPS-EGEAEAAYLNKL----G-LSWAAASQDYDAILFG 177 (346)
T ss_dssp HTCCEEECSS-CHHHHHHHHHHT----T-SSSEEECSSSHHHHTT
T ss_pred CCCCEEEcCC-cHHHHHHHHHhC----C-CeEEEECCCCCcceec
Confidence 3777777766 999998777652 2 5689999999887654
No 7
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=95.51 E-value=0.005 Score=49.98 Aligned_cols=93 Identities=22% Similarity=0.137 Sum_probs=55.4
Q ss_pred CccEEEEecccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCC-CCC--CCc--------eeec
Q 039224 41 AVPVLLVDGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMS-GLP--THK--------EEFI 109 (179)
Q Consensus 41 ~~~~lIVDGYNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~-~~~--~~~--------~~~~ 109 (179)
..+.+||||-||.++...- . .+ ..| -|....+|....|++.++||+.... ..+ ... +-..
T Consensus 23 ~lR~IVIDGsNVA~~~g~~-~-----~F-s~r--gI~~aV~yf~~rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~ 93 (185)
T 3v32_B 23 DLRPVVIDGSNVAMSHGNK-E-----VF-SCR--GILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEK 93 (185)
T ss_dssp CBCCEEEEHHHHHHHHTTT-T-----SE-EHH--HHHHHHHHHHHTTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHH
T ss_pred CCCeEEEeCHHHHhhhCCC-C-----Cc-CHH--HHHHHHHHHHHcCCCceEEEechHhhhcccccCCCCCHHHHHHHHH
Confidence 3467899999999755321 1 11 122 3455566667889998888987642 111 000 0001
Q ss_pred CeEEEeCCCCC---------hHHHHHHHHHHHhhCCCCcEEEEcCCHH
Q 039224 110 GVDIVFPGETC---------ADAWIEKEIVALREDGCPKVWVVTSDHL 148 (179)
Q Consensus 110 gi~VvfT~~~T---------AD~~IErlv~~~~~~~~~~V~VVTSD~~ 148 (179)
-=-|+||+.++ +|.+|..++.+.. -.|||+|+.
T Consensus 94 ~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~------g~IVSND~~ 135 (185)
T 3v32_B 94 KKILVFTPSRRVGGKRVVCYDDRFIVKLAYESD------GIVVSNDTY 135 (185)
T ss_dssp TTCEEEECCCC-------CCHHHHHHHHHHHTT------CEEECSCCC
T ss_pred CCCEEECCCcccCCCcccCccHHHHHHHHHHcC------CEEEeCccH
Confidence 12366777642 7888888877643 468898853
No 8
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=95.41 E-value=0.024 Score=43.69 Aligned_cols=47 Identities=23% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEecHHHHHHHH
Q 039224 118 ETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEV 170 (179)
Q Consensus 118 ~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l 170 (179)
.+.+|+.|.+++.++. .+|||+|..++..|...|..++.-.+|..-+
T Consensus 83 ~~~vD~~ll~lA~~~~------~~lvTnD~~L~kvA~~~GI~Vl~l~~l~~al 129 (134)
T 3ix7_A 83 GESVDEKLLFLARDLE------AALVTNDHALLQMARIYGVKALSIQALAQAL 129 (134)
T ss_dssp CSSHHHHHHHHHHHTT------CEEEESCHHHHHHHHHTTCCEEEHHHHHHHT
T ss_pred cccHHHHHHHHHHHhC------CEEEeCCHHHHHHHHHCCCeEEehHHHHHhh
Confidence 3689999999998864 6999999999999999999999999987755
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=94.95 E-value=0.027 Score=49.53 Aligned_cols=38 Identities=16% Similarity=-0.085 Sum_probs=30.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
||.++-++. .||+.|--++... ..+.|+|+|..+-...
T Consensus 148 Gi~~i~apg-EADd~iA~La~~g-----~~~~iiS~D~Dll~~g 185 (379)
T 1ul1_X 148 GIPYLDAPS-EAEASCAALVKAG-----KVYAAATEDMDCLTFG 185 (379)
T ss_dssp TCCEEECSS-CHHHHHHHHHHHT-----SSSEEECSCTHHHHTT
T ss_pred CCCeecCCC-cHHHHHHHHHhcC-----CeEEEEecCcCccccc
Confidence 788887777 9999998887752 3477999999987764
No 10
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=94.87 E-value=0.024 Score=49.69 Aligned_cols=36 Identities=28% Similarity=0.162 Sum_probs=27.1
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQH 151 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~ 151 (179)
||.++-++ ..||+.|--+... | ..+.|+|+|..+-.
T Consensus 141 gIp~i~ap-~EADaqiA~La~~----g-~~~~I~S~D~Dll~ 176 (352)
T 3qe9_Y 141 GVDCLVAP-YEADAQLAYLNKA----G-IVQAIITEDSALLA 176 (352)
T ss_dssp TCEEEECS-SCHHHHHHHHHHT----T-SCSEEECSCGGGGG
T ss_pred CCcEEECC-cchHHHHHHHHHC----C-CeEEEEeCCcCccc
Confidence 78888654 7999999777662 2 46789999998643
No 11
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=94.85 E-value=0.0069 Score=50.57 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=55.3
Q ss_pred CccEEEEecccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCC-CCC--CCc--------eeec
Q 039224 41 AVPVLLVDGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMS-GLP--THK--------EEFI 109 (179)
Q Consensus 41 ~~~~lIVDGYNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~-~~~--~~~--------~~~~ 109 (179)
..+.+||||-||.++...- . .+ .+| -|....+|....|++.++||+.... ..+ ... +-..
T Consensus 23 ~lR~IVIDGsNVA~~~g~~-~-----~F-s~r--gI~~aV~yF~~RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k 93 (223)
T 3v33_A 23 DLRPVVIDGSNVAMSHGNK-E-----VF-SCR--GILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEK 93 (223)
T ss_dssp CBCCEEEEHHHHHHHSSST-T-----SE-EHH--HHHHHHHHHHTTTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHH
T ss_pred cCCeEEEeCHHHHhhhCCC-C-----Cc-CHH--HHHHHHHHHHHcCCCceEEEechhhhccccccCCCCcHHHHHHHHH
Confidence 3467899999999765421 1 11 122 5666677778899998888876532 111 000 0011
Q ss_pred CeEEEeCCCC---------ChHHHHHHHHHHHhhCCCCcEEEEcCCHH
Q 039224 110 GVDIVFPGET---------CADAWIEKEIVALREDGCPKVWVVTSDHL 148 (179)
Q Consensus 110 gi~VvfT~~~---------TAD~~IErlv~~~~~~~~~~V~VVTSD~~ 148 (179)
-=-|+||+.. -+|.+|..++.+.. -.|||+|+.
T Consensus 94 ~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~~------g~IVSND~y 135 (223)
T 3v33_A 94 KKILVFTPSRRVGGKRVVCYDDRFIVKLAYESD------GIVVSNDTY 135 (223)
T ss_dssp TTCEEEECEEEETTEEEECCHHHHHHHHHHHTT------CEEECSCCC
T ss_pred CCCEEECCCCCcCCccccccchHHHHHHHHHcC------CEEEeCccH
Confidence 1236667654 27888888777632 468888864
No 12
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=93.88 E-value=0.11 Score=41.00 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=44.7
Q ss_pred CCChHHHHHHHHHHHhhCC---------------CCcEEEEcCCHHHHHHHHhCCceEecHHHHHHHH
Q 039224 118 ETCADAWIEKEIVALREDG---------------CPKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEV 170 (179)
Q Consensus 118 ~~TAD~~IErlv~~~~~~~---------------~~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l 170 (179)
..++|+.|-+.+..+.+.. ...|++||.|..++.-|.+.|-.+++-.+|.++.
T Consensus 116 ~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~Gi~~~~~~~~~~~~ 183 (186)
T 2dok_A 116 LGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWA 183 (186)
T ss_dssp -CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHCCCeeCcHHHHHHHh
Confidence 3599999999998875321 1369999999999999999999999999999874
No 13
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=93.66 E-value=0.044 Score=47.73 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=29.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
||.++-++. .||+.|--++.. + ..+.|+|+|...-..+
T Consensus 148 gip~i~ap~-EADd~ia~La~~----g-~v~~i~s~D~D~l~~~ 185 (341)
T 3q8k_A 148 GIPYLDAPS-EAEASCAALVKA----G-KVYAAATEDMDCLTFG 185 (341)
T ss_dssp TCCEEECSS-CHHHHHHHHHHT----T-SSSEEECSCTHHHHTT
T ss_pred CCCEEECCc-cHHHHHHHHHhc----C-CeEEEEcCCccccccC
Confidence 788888876 999999888774 2 3466889999887664
No 14
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=93.46 E-value=0.047 Score=48.03 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 110 GVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 110 gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
||.++-++. .||+.|-.+++ .| ..+.|+|+|...-..+
T Consensus 157 GIp~i~apg-EADaqiA~La~----~g-~~~~I~S~D~D~l~fg 194 (363)
T 3ory_A 157 GIPWVQAPA-EGEAQAAYIVK----KG-DAYASASQDYDSLLFG 194 (363)
T ss_dssp TCCEEECSS-CHHHHHHHHHH----TT-SCSEEECSSSHHHHTT
T ss_pred CCCEEEeCc-cHHHHHHHHHH----CC-CeEEEECCCcCccccC
Confidence 788888876 69998766653 22 5789999999887643
No 15
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=92.09 E-value=0.21 Score=38.76 Aligned_cols=87 Identities=22% Similarity=0.204 Sum_probs=56.3
Q ss_pred cchhhhcCCCHHHHHHH--HHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCCCChHHHHHHHHHHHhhC
Q 039224 58 KLENHFIKGRLDVARQK--LIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGETCADAWIEKEIVALRED 135 (179)
Q Consensus 58 ~L~~~~~~~~Le~AR~~--Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~~TAD~~IErlv~~~~~~ 135 (179)
+|.. .++...+..|.- .++.|.+.+......+.++ +.. +... ++-|++.+..|+.|.+++.++.
T Consensus 41 EL~~-~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~--~~r---~~~~------~i~~~~~~~vD~~l~~lA~~~~-- 106 (142)
T 3i8o_A 41 ELEY-QANMGREIGYKGIEELRKLIEKASEHNIKVEYY--GER---PTRE------EIFLAKSGEIDAMIRKVAKETN-- 106 (142)
T ss_dssp HHHH-HHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEE--SCC---CCHH------HHHSCCSSSHHHHHHHHHHHTT--
T ss_pred HHHH-HHHccchhhHHHHHHHHHHHHHhhccCceEEEe--ccc---Cchh------hhccccCCcHHHHHHHHHHHhC--
Confidence 4555 244455666663 4666666554445555544 211 1111 1123445689999999998864
Q ss_pred CCCcEEEEcCCHHHHHHHHhCCceEec
Q 039224 136 GCPKVWVVTSDHLQQHAAYGAGAFVWS 162 (179)
Q Consensus 136 ~~~~V~VVTSD~~iq~~a~~~GA~~iS 162 (179)
.+|+|+|..++..|...|..++.
T Consensus 107 ----a~lvTnD~~l~kvA~~~GI~V~~ 129 (142)
T 3i8o_A 107 ----SILLTSDWIQYNLAKAQGIEAYF 129 (142)
T ss_dssp ----CEEEESCHHHHHHHHHTTCCEEE
T ss_pred ----CEEEcCCHHHHHHHHHcCCEEEE
Confidence 58999999999999999998875
No 16
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=86.32 E-value=0.37 Score=41.33 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=25.8
Q ss_pred cCeEEEeCCCCChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 109 IGVDIVFPGETCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 109 ~gi~VvfT~~~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
-||.++-++. .||.-+-.+. ..| ..+.|+|+|...-+.+
T Consensus 141 ~gi~~i~apg-eAEA~lA~la----~~g-~~~~I~S~D~Dllql~ 179 (336)
T 1rxw_A 141 MGIPFVDAPS-EGEAQAAYMA----AKG-DVEYTGSQDYDSLLFG 179 (336)
T ss_dssp TTCCEEECSS-CHHHHHHHHH----HTT-SSSEEECSSSHHHHTT
T ss_pred CCCCEEEcCc-hHHHHHHHHH----HcC-CeeEEEcCCCCcceec
Confidence 4788887765 4555444433 333 5789999999887654
No 17
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=85.61 E-value=0.91 Score=34.87 Aligned_cols=46 Identities=20% Similarity=0.019 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEecHHHHHHHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEV 170 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l 170 (179)
..||..+..++.++. ..|+|+|..+|+.|...|-.+++..++++++
T Consensus 83 s~~D~~lIaLA~~l~------~~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~ 128 (165)
T 2lcq_A 83 SKADIEVLALAYELK------GEIFSDDYNVQNIASLLGLRFRTLKRGIKKV 128 (165)
T ss_dssp CHHHHHHHHHHHHHT------CCEECCCHHHHHHHHHTTCCEECCSCCCSSC
T ss_pred CHHHHHHHHhHHHhC------CeEEcCcHHHHHHHHHCCCeEEchhhhcccc
Confidence 479999999999875 3789999999999999999999877555443
No 18
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=85.53 E-value=1.2 Score=32.56 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCH-HHHHHHHhCCceEecHHHHHHHHHHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDH-LQQHAAYGAGAFVWSSKALVSEVSLI 173 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~-~iq~~a~~~GA~~iSs~ef~~~l~~~ 173 (179)
..+|.+|-..+...+ +++||.|. ..+. +.+.|-.++++.+|+++++..
T Consensus 95 ~~~D~lIaA~A~~~~------~~lvT~D~kdf~~-i~~~~i~~i~~~efl~~~~~~ 143 (149)
T 1v96_A 95 DMEDIITATTAIYTN------SLLVTDDPKRYEP-IRRFGLDTMPLDKFIKEVELM 143 (149)
T ss_dssp CHHHHHHHHHHHHHT------CEEEESCHHHHGG-GGGGTCCEEEHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHcC------CEEEECCHHHHhh-hhhCCeeecCHHHHHHHHHHH
Confidence 358998887776543 47999995 5554 567899999999999988654
No 19
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=75.82 E-value=4 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEecHHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVWSSKA 165 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~iSs~e 165 (179)
+. |..|-..+.+.+ .++||.|+.+++.++..|..+++.+.
T Consensus 98 ~~-D~~Ila~A~~~~------~~LvT~D~~l~~~a~~~Gv~vi~~~~ 137 (147)
T 1o4w_A 98 EG-DPSLIEAAEKYG------CILITNDKELKRKAKQRGIPVGYLKE 137 (147)
T ss_dssp CS-HHHHHHHHHHHT------CEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred Cc-hHHHHHHHHHhC------CEEEECCHHHHHHHHHCCCeEEEecC
Confidence 36 999999887642 68999999999999999998887653
No 20
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.55 E-value=23 Score=25.94 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred eecCeEEEeCCC-C--ChHHHHHHHHHHHhhC------CCCcEEEEcCCH--HHHHHHHhCCceEecHHHHHHHHHH
Q 039224 107 EFIGVDIVFPGE-T--CADAWIEKEIVALRED------GCPKVWVVTSDH--LQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 107 ~~~gi~VvfT~~-~--TAD~~IErlv~~~~~~------~~~~V~VVTSD~--~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
...|..|+||.. . +-|+ ++.++..+... +....+|+..+. .=...|..+|..+|+-++|++.|+.
T Consensus 22 ~l~G~~~v~TG~l~~~~R~e-~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 22 CLEGLIFVITGVLESIERDE-AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp SSTTCEEEECSCCSSSCHHH-HHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CcCCCEEEEeeeCCCCCHHH-HHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 468999999987 3 4444 45666666531 123566666543 3345677889999999999999875
No 21
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=66.12 E-value=19 Score=26.12 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=44.6
Q ss_pred eecCeEEEeCCC-C--ChHHHHHHHHHHHhhC------CCCcEEEEcCCH--HHHHHHHhCCceEecHHHHHHHHHH
Q 039224 107 EFIGVDIVFPGE-T--CADAWIEKEIVALRED------GCPKVWVVTSDH--LQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 107 ~~~gi~VvfT~~-~--TAD~~IErlv~~~~~~------~~~~V~VVTSD~--~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
...|.+|+||.. . +=|+ ++.++..+... .....+|+..+. .=...|...|..+||-++|++.|..
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e-~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDE-AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHH-HHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCCCCEEEEeeeCCCCCHHH-HHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 468999999987 3 4444 56666666521 123566666543 3345677899999999999999865
No 22
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=65.26 E-value=8.9 Score=25.58 Aligned_cols=67 Identities=18% Similarity=0.025 Sum_probs=43.3
Q ss_pred eeecCeEEEeCCC-CChHHHHHHHHHHHhhC----CC--Cc-EEEEcCCHHHHHHHHhCCceEecHHHHHHHHHH
Q 039224 106 EEFIGVDIVFPGE-TCADAWIEKEIVALRED----GC--PK-VWVVTSDHLQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 106 ~~~~gi~VvfT~~-~TAD~~IErlv~~~~~~----~~--~~-V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
..+.|+.+.++.. ......|++++..++.. -. .. --||+++..-.......|..+++++++.+-+++
T Consensus 6 ~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 6 KIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHHc
Confidence 4578999999973 43345688888887631 00 12 224444433334455689999999999998875
No 23
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=63.11 E-value=13 Score=30.29 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 124 WIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 124 ~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.|+..+..+...+..+|+|||.|..++..+...|+.++
T Consensus 36 li~~~l~~l~~~~i~~VvVvt~~~~i~~~~~~~g~~v~ 73 (256)
T 3tqd_A 36 MIQHVYESAIKSGAEEVVIATDDKRIRQVAEDFGAVVC 73 (256)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHcCCeEE
Confidence 56666666665445689999999999999988998775
No 24
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=61.30 E-value=9.2 Score=29.02 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCccEEEEecccccCcccc-chhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCC-C----ceeecCeEE
Q 039224 40 NAVPVLLVDGYNVCGYWPK-LENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPT-H----KEEFIGVDI 113 (179)
Q Consensus 40 ~~~~~lIVDGYNvI~a~p~-L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~-~----~~~~~gi~V 113 (179)
|.+-.++|||.|+-+..-. +.. .-|++ +|++.+..+.. .-..-+| |...+.+. . .-...|++|
T Consensus 9 ~~rvavfiD~~Nl~~~~~~~~~~---~~d~~----~l~~~~~~~g~---l~~~~~Y-~~~~~~~~~~~~~~~L~~~g~~v 77 (165)
T 2qip_A 9 KEKIAILVDVQNVYYTCREAYRS---NFDYN----QFWYVATQEKE---VVSAKAY-AIASNDPKQRQFHHILRGVGFEV 77 (165)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHSS---CBCHH----HHHHHHTTTEE---EEEEEEE-ECCCCCHHHHHHHHHHHHHTCEE
T ss_pred CCcEEEEEEHHHHHHHHHHHcCC---CCCHH----HHHHHHhcCCE---EEEEEEE-EccCCchhHHHHHHHHHHCCcEE
Confidence 4567899999999864322 111 23444 35555544321 2233345 43221000 0 012358887
Q ss_pred EeCC--------C-CChHHHH-HHHHHHHhhCCCCcEEEEcCCHHHHHHH
Q 039224 114 VFPG--------E-TCADAWI-EKEIVALREDGCPKVWVVTSDHLQQHAA 153 (179)
Q Consensus 114 vfT~--------~-~TAD~~I-Erlv~~~~~~~~~~V~VVTSD~~iq~~a 153 (179)
+..+ . +.+|..| .+++...+ ....+.+||+|......+
T Consensus 78 ~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~--~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 78 MLKPYIQRRDGSAKGDWDVGITLDAIEIAP--DVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp EECCCCCCSSCCCSCCCHHHHHHHHHHHGG--GCSEEEEECCCGGGHHHH
T ss_pred EEEeeeeccCCccCCCccHHHHHHHHHhhc--cCCEEEEEECChhHHHHH
Confidence 6321 3 5889766 44444432 246899999998655443
No 25
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=60.38 E-value=13 Score=30.12 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=29.2
Q ss_pred HHHHHH-HHHhhCCCCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 124 WIEKEI-VALREDGCPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 124 ~IErlv-~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.|+..+ ..+.+.+..+|+|||+|..+...+...|+.++
T Consensus 28 li~~~i~~~~~~~~~~~vvVvt~~~~i~~~~~~~g~~v~ 66 (253)
T 4fcu_A 28 MILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVV 66 (253)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHTTTCCEE
T ss_pred hHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHcCCeEE
Confidence 566666 55654345689999999999999988898775
No 26
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=59.16 E-value=17 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 124 WIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 124 ~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.|+..+..+...+..+|+|||.|..++..+...|+.++
T Consensus 29 li~~~l~~l~~~~~~~ivVv~~~~~i~~~~~~~g~~v~ 66 (252)
T 3oam_A 29 MIQWVYEQAMQAGADRVIIATDDERVEQAVQAFGGVVC 66 (252)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCHHHHHHHHHHcCCEEE
Confidence 56666666665445689999999999999988998765
No 27
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=57.59 E-value=20 Score=27.70 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCC-CcEEEEcCCHHHHHHHHhCCceEec
Q 039224 123 AWIEKEIVALREDGC-PKVWVVTSDHLQQHAAYGAGAFVWS 162 (179)
Q Consensus 123 ~~IErlv~~~~~~~~-~~V~VVTSD~~iq~~a~~~GA~~iS 162 (179)
..|+..+..+...+. .+|+|||++..+...+...|+.++.
T Consensus 28 pli~~~i~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~ 68 (245)
T 1h7e_A 28 PMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIM 68 (245)
T ss_dssp EHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHcCCeEEe
Confidence 467777777765543 6899999998888888888887654
No 28
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=55.55 E-value=17 Score=25.46 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=44.9
Q ss_pred eecCeEEEeCCC-CChHHHHHHHHHHHhhC------CCCcEEEEcCCH-HHHHHHHhCCceEecHHHHHHHHHHH
Q 039224 107 EFIGVDIVFPGE-TCADAWIEKEIVALRED------GCPKVWVVTSDH-LQQHAAYGAGAFVWSSKALVSEVSLI 173 (179)
Q Consensus 107 ~~~gi~VvfT~~-~TAD~~IErlv~~~~~~------~~~~V~VVTSD~-~iq~~a~~~GA~~iSs~ef~~~l~~~ 173 (179)
...|..|+||.. ..-=+.++.++.++... +.....|+..+. .=...|..+|..+++-++|++.|...
T Consensus 7 ~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~~ 81 (92)
T 1l7b_A 7 ALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEAR 81 (92)
T ss_dssp SSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHHH
T ss_pred CcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHhc
Confidence 468999999987 43335566777776531 123455555432 22346778999999999999999764
No 29
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=55.45 E-value=11 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHhCCceEecHHHHHHHHHH
Q 039224 139 KVWVVTSDHLQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 139 ~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
+|.|.+.|..-+..|+..||..+..++|++.|..
T Consensus 34 ~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~ 67 (189)
T 2ftc_A 34 KVAVFTENASEVKIAEENGAAFAGGTSLIQKIWD 67 (189)
T ss_pred EEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHc
Confidence 7999999976677899999999999999988854
No 30
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=54.32 E-value=23 Score=28.98 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 124 WIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 124 ~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.|+..+..+.+.+..+|+|||.|..++..+...|+.++
T Consensus 45 mi~~~l~~l~~~~i~~IvV~t~~~~i~~~~~~~g~~v~ 82 (264)
T 3k8d_A 45 MIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVC 82 (264)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHcCCEEE
Confidence 56666666665445689999999999999988898775
No 31
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=52.29 E-value=27 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 123 AWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 123 ~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.+|+..+..+...+..+|+|||++..+...+...|+.++
T Consensus 28 pli~~~l~~l~~~~~~~ivvv~~~~~i~~~~~~~~~~~~ 66 (262)
T 1vic_A 28 PMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVC 66 (262)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred EHHHHHHHHHHhCCCceEEEECCcHHHHHHHHhcCCEEE
Confidence 456666666665444689999999888888888888765
No 32
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=51.98 E-value=33 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH-HhCCce
Q 039224 123 AWIEKEIVALREDGCPKVWVVTSDHLQQHAA-YGAGAF 159 (179)
Q Consensus 123 ~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a-~~~GA~ 159 (179)
.+|+.++....+.| .+|.+||+++..-..- ++.|..
T Consensus 120 ~~ve~L~e~~~~~G-~~v~ivs~~~eeG~ql~~~fGGI 156 (166)
T 3ir9_A 120 DIVDEFSELADKSN-AKVVFVSTDFDEGSQLMNAFGGI 156 (166)
T ss_dssp EHHHHHHHHHHHTT-CEEEEECSCSHHHHHHHHTSTTE
T ss_pred HHHHHHHHHHHhcC-CEEEEECCCChhHHHHHHcCCCE
Confidence 57888888887654 6899999999986655 777754
No 33
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=51.09 E-value=58 Score=22.50 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=44.3
Q ss_pred eecCeEEEeCCC-CChHHHHHHHHHHHhhC------CCCcEEEEcCC----HHHHHHHHhCCceEecHHHHHHHHHH
Q 039224 107 EFIGVDIVFPGE-TCADAWIEKEIVALRED------GCPKVWVVTSD----HLQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 107 ~~~gi~VvfT~~-~TAD~~IErlv~~~~~~------~~~~V~VVTSD----~~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
...|+.|++|.. ......|++++..++.. ....-+|++.| ..--..|...|..+++.++|.+-+++
T Consensus 15 ~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~ 91 (107)
T 3l3e_A 15 PLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQE 91 (107)
T ss_dssp TTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHH
T ss_pred CCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHh
Confidence 568999999976 45567788998887632 01122333222 13334566799999999999987764
No 34
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=50.98 E-value=25 Score=27.28 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCC-CcEEEEcCCHHHHHHHHhCCceEe
Q 039224 124 WIEKEIVALREDGC-PKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 124 ~IErlv~~~~~~~~-~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
.|+..+..+.+.+. .+|+|||.+..++..+...|+.++
T Consensus 30 li~~~i~~~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~ 68 (229)
T 1qwj_A 30 LIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVH 68 (229)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCcCEEEEECChHHHHHHHHHcCCEEE
Confidence 45666655554332 579999999889988888888754
No 35
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=48.28 E-value=9.8 Score=32.33 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDH 147 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~ 147 (179)
...|+.|.+++..+.+.+ ..++|+|||+
T Consensus 275 ~~~D~~vG~il~~L~~~g-nTlviftsDh 302 (375)
T 2w5v_A 275 NDFDDAIGTALAFAKKDG-NTLVIVTSDH 302 (375)
T ss_dssp HHHHHHHHHHHHHHHHHS-SEEEEEECSC
T ss_pred HHHHHHHHHHHHHHhhCC-CEEEEEECcC
Confidence 478999999999998765 6799999999
No 36
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=46.38 E-value=6.2 Score=30.57 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=28.1
Q ss_pred ecccccCccccchhhhcCCCHHHHHHHHHHHHHhccc
Q 039224 48 DGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSM 84 (179)
Q Consensus 48 DGYNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~ 84 (179)
|| .+....|+|.-......+++|-+.|++.|.+|++
T Consensus 61 dG-s~t~~l~eldi~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 61 DG-IIIGTIDGFDLVVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp TT-EEEEEETTTCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CC-eEEEEecCceeEeeCCCHHHHHHHHHHHHHHHHH
Confidence 55 4555567766655678999999999999999986
No 37
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=45.08 E-value=36 Score=26.07 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhCC-CCcEEEEcCCHHHHHHHHhCCceEe
Q 039224 123 AWIEKEIVALREDG-CPKVWVVTSDHLQQHAAYGAGAFVW 161 (179)
Q Consensus 123 ~~IErlv~~~~~~~-~~~V~VVTSD~~iq~~a~~~GA~~i 161 (179)
..|+..+..+.+.+ -.+|+|||++..+...+...|+.++
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~ 69 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVV 69 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCEEE
Confidence 35666666665433 2689999999888888888888654
No 38
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=44.97 E-value=26 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEecHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEVS 171 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l~ 171 (179)
-.|..+-.++..++ +.++|.|+.+.+.+.. .++..+|++.+.
T Consensus 115 ~yDA~~lAlA~~~g------~~L~T~D~~L~~~a~~----~~~~~~~l~~~~ 156 (158)
T 1v8p_A 115 FYDASYAYVAESSG------LVLVTQDRELLAKTKG----AIDVETLLVRLA 156 (158)
T ss_dssp HHHHHHHHHHHHTT------CEEECSCHHHHHHSTT----CBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------CeEEeCCHHHHHHHHh----ccCHHHHHHHHh
Confidence 67988888776653 4579999999888755 888999988764
No 39
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=42.48 E-value=12 Score=31.45 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
...|..|.+++..+.+.+ ...++|+|||+-.
T Consensus 189 ~~~D~~ig~ll~~L~~~g~~~nT~vi~tSDHG~ 221 (393)
T 2gso_A 189 RAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGM 221 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Confidence 478999999999998643 2369999999854
No 40
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB, sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio parahaemolyticus}
Probab=40.85 E-value=13 Score=32.12 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 120 CADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
-+|..|.+++..+.+.+ ...++|+||||-.
T Consensus 277 ~~D~~ig~~l~~L~~~g~~~nTlvI~tsDHG~ 308 (450)
T 3lxq_A 277 YSDYALGTFFDKAKKSSYWDDTIFIVIADHDA 308 (450)
T ss_dssp HHHHHHHHHHHHHTTSSSGGGEEEEEEESCCS
T ss_pred HHHHHHHHHHHHHHhCCCcCCeEEEEECCCCc
Confidence 68999999999998653 2469999999853
No 41
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=39.13 E-value=14 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDHL 148 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~~ 148 (179)
+..|..|-+++..+.+ ..++|+|||+-
T Consensus 317 ~~~D~~vg~~l~~L~e---ntliiftsDnG 343 (413)
T 3m7v_A 317 HEFDERLPEIIAAMKV---DDLLLITADHG 343 (413)
T ss_dssp HHHHHHHHHHHHTCCT---TEEEEEECSSB
T ss_pred HHHHhHHHHHHHhcCC---CCEEEEEccCC
Confidence 3568888899888874 57999999983
No 42
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase, phosphatase, cell membrane, transmembrane, LTA, membrane, secreted, cell WALL; HET: TPO PG4; 2.35A {Bacillus subtilis}
Probab=38.69 E-value=19 Score=31.14 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHhhCC--CCcEEEEcCCHH
Q 039224 120 CADAWIEKEIVALREDG--CPKVWVVTSDHL 148 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~--~~~V~VVTSD~~ 148 (179)
-.|..|.+++..+.+.| ...++|+||||-
T Consensus 230 ~~D~~iG~ll~~Lk~~gl~dnTiIv~tsDHG 260 (436)
T 2w8d_A 230 YLDQSIEQFFNDLKKDGLYDKSIIVMYGDHY 260 (436)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTEEEEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCCcCCeEEEEECCCC
Confidence 57999999999998753 246999999984
No 43
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=37.12 E-value=94 Score=20.89 Aligned_cols=93 Identities=14% Similarity=0.021 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhccccCC-ceEEEEEcCCCCCCCCCceeecCeEEEeCC---C-CChHHHHHHHHHHHhhCCCCcEEEEcC
Q 039224 71 ARQKLIEELVEFSMIRE-VKVVVVFDALMSGLPTHKEEFIGVDIVFPG---E-TCADAWIEKEIVALREDGCPKVWVVTS 145 (179)
Q Consensus 71 AR~~Li~~L~~y~~~~g-~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~---~-~TAD~~IErlv~~~~~~~~~~V~VVTS 145 (179)
.|+.|...|... | ++++.+-|+...-..-. .....+++.. . .+.-++++++-.... .-.++++|+
T Consensus 26 ~~~~l~~~L~~~----g~~~v~~~~~~~~a~~~l~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~---~~~ii~~s~ 95 (135)
T 3snk_A 26 FKRDVATRLDAL----AIYDVRVSETDDFLKGPPA---DTRPGIVILDLGGGDLLGKPGIVEARALWA---TVPLIAVSD 95 (135)
T ss_dssp HHHHHHHHHHHT----SSEEEEEECGGGGGGCCCT---TCCCSEEEEEEETTGGGGSTTHHHHHGGGT---TCCEEEEES
T ss_pred HHHHHHHHHhhc----CCeEEEEeccHHHHHHHHh---ccCCCEEEEeCCCCCchHHHHHHHHHhhCC---CCcEEEEeC
Confidence 455566666543 5 78886666553211101 1123344432 2 255566666544332 246888887
Q ss_pred --CHHHHHHHHhCCce-----EecHHHHHHHHHHH
Q 039224 146 --DHLQQHAAYGAGAF-----VWSSKALVSEVSLI 173 (179)
Q Consensus 146 --D~~iq~~a~~~GA~-----~iSs~ef~~~l~~~ 173 (179)
|......+...||. .++.++|...|...
T Consensus 96 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 130 (135)
T 3snk_A 96 ELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFH 130 (135)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHH
Confidence 45566677788875 46888888887654
No 44
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase; transmembrane, cell WALL biogenesis/degradation, LTAS, membrane, secreted; 1.20A {Staphylococcus aureus} PDB: 2w5s_A* 2w5t_A* 2w5r_A*
Probab=36.54 E-value=22 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHhhCC--CCcEEEEcCCHH
Q 039224 120 CADAWIEKEIVALREDG--CPKVWVVTSDHL 148 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~--~~~V~VVTSD~~ 148 (179)
..|..|.+++..+.+.| ...++|+||||-
T Consensus 230 ~~D~~iG~ll~~Lk~~g~~dnTiIVf~sDHG 260 (424)
T 2w5q_A 230 YLDEALEEYINDLKKKGLYDNSVIMIYGDHY 260 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTSEEEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCCcCCeEEEEECCCC
Confidence 57999999999998753 246999999984
No 45
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=35.78 E-value=94 Score=20.52 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCC----CChHHHHHHHHHHHhhCCCCcEEEEcC--
Q 039224 72 RQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGE----TCADAWIEKEIVALREDGCPKVWVVTS-- 145 (179)
Q Consensus 72 R~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~----~TAD~~IErlv~~~~~~~~~~V~VVTS-- 145 (179)
|+.|...|.. .|+++..+-|+...-. .-......+++..- .+.-++++++- +.. ...++++|+
T Consensus 15 ~~~l~~~L~~----~g~~v~~~~~~~~al~---~~~~~~~dlii~D~~~p~~~g~~~~~~lr-~~~---~~~ii~~t~~~ 83 (120)
T 3f6p_A 15 ADILEFNLRK----EGYEVHCAHDGNEAVE---MVEELQPDLILLDIMLPNKDGVEVCREVR-KKY---DMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHHHH----TTCEEEEESSHHHHHH---HHHTTCCSEEEEETTSTTTHHHHHHHHHH-TTC---CSCEEEEEESS
T ss_pred HHHHHHHHHh----CCEEEEEeCCHHHHHH---HHhhCCCCEEEEeCCCCCCCHHHHHHHHH-hcC---CCCEEEEECCC
Confidence 3444444543 3677766555432100 00112234555432 24445555542 221 245777775
Q ss_pred CHHHHHHHHhCCc-----eEecHHHHHHHHHHHH
Q 039224 146 DHLQQHAAYGAGA-----FVWSSKALVSEVSLII 174 (179)
Q Consensus 146 D~~iq~~a~~~GA-----~~iSs~ef~~~l~~~~ 174 (179)
|......+...|| +.++.++|...+.+..
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 4555566778888 4578899988887653
No 46
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=35.27 E-value=26 Score=30.48 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 120 CADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
..|..|-+++..+.+.| ...++|+|||+-.
T Consensus 285 ~~D~~iG~ll~~L~~~g~~dnTiIiftSDHG~ 316 (491)
T 2qzu_A 285 GVDENVGRIIEALKQNNLFDNTIVVFTSDHGI 316 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEECcCCc
Confidence 58999999999998753 2469999999864
No 47
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.48 E-value=1.1e+02 Score=21.26 Aligned_cols=96 Identities=16% Similarity=-0.016 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCC---C-CChHHHHHHHHHHHhhCCCCcEEEEc--
Q 039224 71 ARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPG---E-TCADAWIEKEIVALREDGCPKVWVVT-- 144 (179)
Q Consensus 71 AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~---~-~TAD~~IErlv~~~~~~~~~~V~VVT-- 144 (179)
.|+.|.+.|... |+.|..+-|+...-.. -......+++.. . .+.-++++.+-..... ..-.|+|+|
T Consensus 19 ~~~~l~~~L~~~----g~~v~~~~~~~~al~~---l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~-~~~pii~~s~~ 90 (154)
T 3gt7_A 19 QAEHLKHILEET----GYQTEHVRNGREAVRF---LSLTRPDLIISDVLMPEMDGYALCRWLKGQPDL-RTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHHHTT----TCEEEEESSHHHHHHH---HTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTT-TTSCEEEEECC
T ss_pred HHHHHHHHHHHC----CCEEEEeCCHHHHHHH---HHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCc-CCCCEEEEECC
Confidence 345555556543 6777665554321000 001122344432 2 3666677665433211 123588888
Q ss_pred CCHHHHHHHHhCCce-----EecHHHHHHHHHHHH
Q 039224 145 SDHLQQHAAYGAGAF-----VWSSKALVSEVSLII 174 (179)
Q Consensus 145 SD~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~ 174 (179)
+|......+...||. .++.++|...|....
T Consensus 91 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 91 SDPRDVVRSLECGADDFITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp CSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 466666777788873 458888888887653
No 48
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=34.46 E-value=65 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCce
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAF 159 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~ 159 (179)
+...+++ ++....+.| .+|.||||++..-..-.+.|..
T Consensus 72 ~~~~~~e-l~e~~~~~G-~~V~ivs~~~~~G~qL~~~gGI 109 (124)
T 1x52_A 72 TRSRYVR-LVDSVKENA-GTVRIFSSLHVSGEQLSQLTGV 109 (124)
T ss_dssp HHHHHHH-HHHHHHHTT-CEEEEECSSSHHHHHHHTTTTE
T ss_pred HHHHHHH-HHHHHHHcC-CEEEEECCCCccHHHHhcCCCE
Confidence 3455777 777777654 6899999999986555777754
No 49
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.26 E-value=85 Score=22.57 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=43.2
Q ss_pred eecCeEEEeCCC-CChHHHHHHHHHHHhhC------CCCcEEEEcCCH-HHHHHHHhCCceEecHHHHHHHHHH
Q 039224 107 EFIGVDIVFPGE-TCADAWIEKEIVALRED------GCPKVWVVTSDH-LQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 107 ~~~gi~VvfT~~-~TAD~~IErlv~~~~~~------~~~~V~VVTSD~-~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
...|+.|++|.. ..--..|++++..+... ....-+|++... .--..|...|..+++.++|.+-+++
T Consensus 22 ~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~ 95 (129)
T 2d8m_A 22 ILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRM 95 (129)
T ss_dssp TSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHT
T ss_pred cCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHh
Confidence 368999999987 44446678888887642 112334444322 2223556689999999999987754
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.14 E-value=1.1e+02 Score=20.66 Aligned_cols=52 Identities=21% Similarity=0.091 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCCce-----EecHHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAGAF-----VWSSKALVSEVSLII 174 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~ 174 (179)
++-++++.+-.... .-.|+++|+. ......+...||. .++.++|...|....
T Consensus 61 ~g~~~~~~l~~~~~---~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 61 ESLNLIRRIREEFP---DTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHHHHHHCT---TCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 44455555443322 2467788764 4455666677765 357888888887654
No 51
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=33.76 E-value=28 Score=24.44 Aligned_cols=71 Identities=13% Similarity=-0.088 Sum_probs=47.5
Q ss_pred ccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCC-CChHHHHHHH
Q 039224 50 YNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGE-TCADAWIEKE 128 (179)
Q Consensus 50 YNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~-~TAD~~IErl 128 (179)
|+.+.+-|.++..+...|++..+++|.+.|..+....+. |.|. .. .....++ .-. +-.|.|.+-+
T Consensus 20 Y~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~~gGp~~-----Y~g~---~m--~~~H~~~----~I~~~~f~~wl~~~ 85 (116)
T 1dlw_A 20 YANIQADATVATFFNGIDMPNQTNKTAAFLCAALGGPNA-----WTGR---NL--KEVHANM----GVSNAQFTTVIGHL 85 (116)
T ss_dssp HHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHHTTCSSC-----CCSC---CH--HHHHTTS----CCCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCcc-----CCCc---CH--HHHhcCC----CcCHHHHHHHHHHH
Confidence 667777888998887779999999999999998753321 1111 00 0111222 223 4788999998
Q ss_pred HHHHhh
Q 039224 129 IVALRE 134 (179)
Q Consensus 129 v~~~~~ 134 (179)
...+.+
T Consensus 86 ~~al~~ 91 (116)
T 1dlw_A 86 RSALTG 91 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 52
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase, plasmid, formylglycine, phosphodiesterase; 1.42A {Rhizobium leguminosarum BV} PDB: 2w8s_A
Probab=33.38 E-value=20 Score=31.76 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 120 CADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
..|..|.+++..+.+.| ...++|+|||+-.
T Consensus 325 ~~D~~iG~ll~~L~~~gl~dnTiIiftSDHG~ 356 (543)
T 2vqr_A 325 EVDDCLGRVFSYLDETGQWDDTLIIFTSDHGE 356 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhcCCcCCeEEEEECcCCc
Confidence 57999999999998753 2369999999864
No 53
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=33.27 E-value=1e+02 Score=24.95 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=44.5
Q ss_pred eecCeEEEeCCC--CChHHHHHHHHHHHhhC----------------CCCcEEEEcCC--HHHHHHHHhCCceEecHHHH
Q 039224 107 EFIGVDIVFPGE--TCADAWIEKEIVALRED----------------GCPKVWVVTSD--HLQQHAAYGAGAFVWSSKAL 166 (179)
Q Consensus 107 ~~~gi~VvfT~~--~TAD~~IErlv~~~~~~----------------~~~~V~VVTSD--~~iq~~a~~~GA~~iSs~ef 166 (179)
.+.|+.|..+.. ....+.+..++...+.. +...|+|+.++ ......+...|..++|++++
T Consensus 155 LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv 234 (259)
T 1kzy_C 155 PFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWV 234 (259)
T ss_dssp TTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHH
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHH
Confidence 457888888765 25566777777654421 11346666432 45667888999999999999
Q ss_pred HHHHHH
Q 039224 167 VSEVSL 172 (179)
Q Consensus 167 ~~~l~~ 172 (179)
++-|..
T Consensus 235 ~~sI~~ 240 (259)
T 1kzy_C 235 IQCLIV 240 (259)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987754
No 54
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.44 E-value=1.2e+02 Score=20.83 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCC-c-----eEecHHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAG-A-----FVWSSKALVSEVSLII 174 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~G-A-----~~iSs~ef~~~l~~~~ 174 (179)
+.-++++.+-.... .-.|+|+|+. ......+...| | +.++.++|...|....
T Consensus 72 ~g~~~~~~l~~~~~---~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 72 DGPTLLARIHQQYP---STTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp CHHHHHHHHHHHCT---TSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHCC---CCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 66677777655332 2468888874 44555677788 5 4568888888887654
No 55
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2
Probab=32.36 E-value=21 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
...|..|.+++..+.+.| ...++|+|||+-.
T Consensus 230 ~~~D~~vG~ll~~L~~~g~~dnTiviftSDhG~ 262 (492)
T 1fsu_A 230 SLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGG 262 (492)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHcCCccCEEEEEECCCCC
Confidence 478999999999998753 1469999999864
No 56
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P*
Probab=31.80 E-value=22 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
...|..|.+++..+.+.| ...++|+|||+-.
T Consensus 234 ~~~D~~vG~ll~~L~~~gl~dnTiViftSDhG~ 266 (489)
T 1auk_A 234 MELDAAVGTLMTAIGDLGLLEETLVIFTADNGP 266 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHcCCcCCeEEEEeCCCCc
Confidence 478999999999998754 2359999999864
No 57
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} SCOP: c.76.1.2
Probab=31.09 E-value=27 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhhCCC--CcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDGC--PKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~--~~V~VVTSD~~i 149 (179)
...|..|-+++..+.+.|- ..++|+|||+-.
T Consensus 288 ~~~D~~iG~ll~~L~~~g~~dnTiIiftSDhG~ 320 (536)
T 1hdh_A 288 ERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGA 320 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSC
T ss_pred HHHHHHHHHHHHHHHHcCCcCCeEEEEECcCCC
Confidence 3688999999999987532 369999999854
No 58
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.08 E-value=22 Score=31.11 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
...|..|-+++..+.+.| ...++|+|||+-.
T Consensus 255 ~~~D~~vG~ll~~L~~~g~~dnTiVIftSDHG~ 287 (482)
T 3b5q_A 255 KMVSKQVDSVLKALYSTPAGRNTIVVIMADHGD 287 (482)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcCCeEEEEECCCCc
Confidence 367999999999998643 1359999999864
No 59
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=30.94 E-value=9 Score=30.15 Aligned_cols=35 Identities=40% Similarity=0.622 Sum_probs=20.8
Q ss_pred chhhhhhhhcccCCCccc-----ccccccceeecCCCCCCCccEEEEec
Q 039224 6 TSYRRKKVEKEELPEDTE-----LYRFFSYIYNTNQGIDNAVPVLLVDG 49 (179)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lIVDG 49 (179)
..|||-++.. +-|.|.. ++|-|+.+ .-|+++||||
T Consensus 48 ~~YRrf~I~~-~g~DDya~M~Evl~RR~~r~--------~~PDLilIDG 87 (159)
T 2nrr_A 48 GDYRRYKIEQ-DHPDDYESIRTVVKRRYSKH--------PLPNLLFVDG 87 (159)
T ss_dssp GGCEEEEC------CHHHHHHHHHHHHHTTS--------CCCSEEEESS
T ss_pred hhCceeecCC-CCCCHHHHHHHHHHHHhccC--------CCCCEEEEeC
Confidence 3688888865 4345543 45656554 4789999998
No 60
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=30.91 E-value=33 Score=24.35 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=46.6
Q ss_pred ccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEe----CCC-CChHHH
Q 039224 50 YNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVF----PGE-TCADAW 124 (179)
Q Consensus 50 YNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~Vvf----T~~-~TAD~~ 124 (179)
|.-+.+.|.++..+...|++..+++|.+.|..+....+ .|.|. + .. .. ..-+ .-. +--|.|
T Consensus 22 Y~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~~ggp~-----~y~g~--~-m~--~~----H~~l~~~~~I~~~~f~~w 87 (124)
T 1s69_A 22 YERVLQDDRIKHFFADVDMAKQRAHQKAFLTYAFGGTD-----KYDGR--Y-MR--EA----HKELVENHGLNGEHFDAV 87 (124)
T ss_dssp HHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHHTTSSS-----CCSSC--C-HH--HH----HHHHHHHHCCCHHHHHHH
T ss_pred HHHHHcChHHHHHhCCCCHHHHHHHHHHHHHHHhCCCC-----CCCCc--c-HH--HH----HhCcccCCCcCHHHHHHH
Confidence 66667788899888777999999999999999886432 11221 0 00 00 1112 223 477888
Q ss_pred HHHHHHHHhh
Q 039224 125 IEKEIVALRE 134 (179)
Q Consensus 125 IErlv~~~~~ 134 (179)
.+-+...+.+
T Consensus 88 l~~l~~al~e 97 (124)
T 1s69_A 88 AEDLLATLKE 97 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 61
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, transferase; 1.70A {Escherichia coli}
Probab=30.63 E-value=27 Score=30.26 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHhhCCC--CcEEEEcCCHH
Q 039224 120 CADAWIEKEIVALREDGC--PKVWVVTSDHL 148 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~--~~V~VVTSD~~ 148 (179)
..|..|.+++..+.+.|- ..++|+|||+-
T Consensus 276 ~~D~~iG~ll~~L~~~g~~dnTlVIftSDHG 306 (502)
T 3ed4_A 276 YLDAQVGKVLDKIKAMGEEDNTIVIFTSDNG 306 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEeCCCC
Confidence 679999999999997532 35999999985
No 62
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=30.21 E-value=51 Score=29.94 Aligned_cols=74 Identities=8% Similarity=-0.016 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCCC-------ceeecCeEEEeCCCCChH----HHHHHHHHHHhhCC
Q 039224 68 LDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPTH-------KEEFIGVDIVFPGETCAD----AWIEKEIVALREDG 136 (179)
Q Consensus 68 Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~-------~~~~~gi~VvfT~~~TAD----~~IErlv~~~~~~~ 136 (179)
++..+.+|+.+=....+..+..++|||.|....+.+. .-...|++|+..+.-|.. .|.-|....++..
T Consensus 22 l~~l~~~L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~~- 100 (500)
T 3czp_A 22 VIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPK- 100 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCCT-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCCC-
Confidence 3344444443333333336899999999986433221 124579999988664443 3678888888864
Q ss_pred CCcEEEE
Q 039224 137 CPKVWVV 143 (179)
Q Consensus 137 ~~~V~VV 143 (179)
.++.|.
T Consensus 101 -G~IvIf 106 (500)
T 3czp_A 101 -GRTGIF 106 (500)
T ss_dssp -TCEEEE
T ss_pred -CeEEEE
Confidence 345443
No 63
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.02 E-value=1.4e+02 Score=20.48 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCC-CCCCCceeecCeEEEeCC---C-CChHHHHHHHHHHHhhCCCCcEEEEcC
Q 039224 71 ARQKLIEELVEFSMIREVKVVVVFDALMS-GLPTHKEEFIGVDIVFPG---E-TCADAWIEKEIVALREDGCPKVWVVTS 145 (179)
Q Consensus 71 AR~~Li~~L~~y~~~~g~~V~VVFDa~~~-~~~~~~~~~~gi~VvfT~---~-~TAD~~IErlv~~~~~~~~~~V~VVTS 145 (179)
.++.|...|.. .|++|+.+-++... ..... ....+++.. . .++-++++.+-...+ .-.|+|+|+
T Consensus 15 ~~~~l~~~L~~----~g~~v~~~~~~~~a~~~l~~----~~~dliild~~l~~~~g~~~~~~l~~~~~---~~pii~ls~ 83 (155)
T 1qkk_A 15 LRKAMQQTLEL----AGFTVSSFASATEALAGLSA----DFAGIVISDIRMPGMDGLALFRKILALDP---DLPMILVTG 83 (155)
T ss_dssp HHHHHHHHHHH----TTCEEEEESCHHHHHHTCCT----TCCSEEEEESCCSSSCHHHHHHHHHHHCT---TSCEEEEEC
T ss_pred HHHHHHHHHHH----cCcEEEEECCHHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHhhCC---CCCEEEEEC
Confidence 35556666654 36777765554321 11100 112333322 2 366677777655433 245888876
Q ss_pred CH--HHHHHHHhCCce-----EecHHHHHHHHHHHH
Q 039224 146 DH--LQQHAAYGAGAF-----VWSSKALVSEVSLII 174 (179)
Q Consensus 146 D~--~iq~~a~~~GA~-----~iSs~ef~~~l~~~~ 174 (179)
.. .....+...||. .++.++|...|....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 43 455666778874 358888888776553
No 64
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=28.53 E-value=65 Score=25.93 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.6
Q ss_pred CcEEEEcCCHHHHHHHHhCCceEecHHHHHHHHHH
Q 039224 138 PKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 138 ~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
.+|.|.+.|.. ...|+..||..++.++| +.+..
T Consensus 58 ~~V~Vf~~~~~-~~~A~~aGa~~vg~~~L-~ki~~ 90 (219)
T 1i2a_A 58 AKIAVIGTGDL-AKQAEELGLTVIRKEEI-EELGK 90 (219)
T ss_dssp CCEEEECCHHH-HHHHHHTTCEEECHHHH-HHHHH
T ss_pred cEEEEEcCchh-HHHHHHCCCCEEcHHHH-HHHHh
Confidence 57999998884 77889999999999999 88854
No 65
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=27.93 E-value=55 Score=23.10 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=46.9
Q ss_pred ccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCC-ceEEEEEcCCCCCCCCCceeecCeEEEeCCC-CChHHHHHH
Q 039224 50 YNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIRE-VKVVVVFDALMSGLPTHKEEFIGVDIVFPGE-TCADAWIEK 127 (179)
Q Consensus 50 YNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g-~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~-~TAD~~IEr 127 (179)
|..+.+-|.++..+...|++..+++|.+.|..+....+ | .|.. -.....++ .-. +-.|.|.+-
T Consensus 25 Y~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~~gGp~~Y------~g~~-----m~~~H~~~----~I~~~~f~~wl~~ 89 (121)
T 3aq9_A 25 YKKVLADERVKHFFKNTDMDHQTKQETDFLTMLLGGPNHY------KGKN-----MTEAHKGM----NLQNLHFDAIIEN 89 (121)
T ss_dssp HHHHTTCTTTGGGGTTCCHHHHHHHHHHHHHHHTTSCCCC------CSCC-----HHHHTTTS----CBCHHHHHHHHHH
T ss_pred HHHHHcCHHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCC------CCcc-----HHHHhcCC----CcCHHHHHHHHHH
Confidence 66677778888888777999999999999999765332 2 1110 00111222 223 478899999
Q ss_pred HHHHHhh
Q 039224 128 EIVALRE 134 (179)
Q Consensus 128 lv~~~~~ 134 (179)
+...+.+
T Consensus 90 ~~~al~~ 96 (121)
T 3aq9_A 90 LAATLKE 96 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888875
No 66
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=27.86 E-value=93 Score=21.73 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=39.1
Q ss_pred eEEEeCCC----CChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCCce-----EecHHHHHHHHHHH
Q 039224 111 VDIVFPGE----TCADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAGAF-----VWSSKALVSEVSLI 173 (179)
Q Consensus 111 i~VvfT~~----~TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~GA~-----~iSs~ef~~~l~~~ 173 (179)
..+++..- .++-++++.+-.... ...|+|+|+. ......+...||. .++.++|...|...
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~---~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDK---NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCT---TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCC---CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 44555532 366677777654433 2468888865 6677778888885 35778888887654
No 67
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.64 E-value=1.5e+02 Score=20.32 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCC---C-CChHHHHHHHHHHHhhCCCCcEEEEcCC
Q 039224 71 ARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPG---E-TCADAWIEKEIVALREDGCPKVWVVTSD 146 (179)
Q Consensus 71 AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~---~-~TAD~~IErlv~~~~~~~~~~V~VVTSD 146 (179)
.|+.|...|.. .|++++.+-|+...-.. -......+++.. . .+.-+++..+-...+ .-.|+++|+.
T Consensus 19 ~~~~l~~~L~~----~g~~v~~~~~~~~a~~~---l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~---~~~ii~ls~~ 88 (154)
T 2rjn_A 19 ILNSLKRLIKR----LGCNIITFTSPLDALEA---LKGTSVQLVISDMRMPEMGGEVFLEQVAKSYP---DIERVVISGY 88 (154)
T ss_dssp HHHHHHHHHHT----TTCEEEEESCHHHHHHH---HTTSCCSEEEEESSCSSSCHHHHHHHHHHHCT---TSEEEEEECG
T ss_pred HHHHHHHHHHH----cCCeEEEeCCHHHHHHH---HhcCCCCEEEEecCCCCCCHHHHHHHHHHhCC---CCcEEEEecC
Confidence 34555566654 46777755444321000 000112333332 2 355566666554332 2468888876
Q ss_pred HH--HHHHHHhCC-c-----eEecHHHHHHHHHHHH
Q 039224 147 HL--QQHAAYGAG-A-----FVWSSKALVSEVSLII 174 (179)
Q Consensus 147 ~~--iq~~a~~~G-A-----~~iSs~ef~~~l~~~~ 174 (179)
.. ....+...| | +.++.++|...|....
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 89 ADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp GGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 54 444555566 5 3468888888886654
No 68
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1
Probab=27.59 E-value=8.6 Score=31.38 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=8.4
Q ss_pred cEEEEeccccc
Q 039224 43 PVLLVDGYNVC 53 (179)
Q Consensus 43 ~~lIVDGYNvI 53 (179)
++=|||||||=
T Consensus 97 DVSlVDGfNlP 107 (206)
T 1du5_A 97 DISLIDGFNVP 107 (206)
T ss_dssp EEECTTCBCSC
T ss_pred eeeeecccccC
Confidence 35589999993
No 69
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Probab=27.37 E-value=41 Score=31.02 Aligned_cols=30 Identities=30% Similarity=0.237 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDHL 148 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~~ 148 (179)
...|..|.+++..+.+.+..-.+||||||-
T Consensus 318 ~~lD~~lg~Ll~~l~~~~~~t~vivtSDHG 347 (565)
T 3q3q_A 318 DRLDTELGAFFDKLDKDGIDYVVVLTADHG 347 (565)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEcCCC
Confidence 478999999999998654456899999954
No 70
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=26.57 E-value=13 Score=30.61 Aligned_cols=48 Identities=35% Similarity=0.519 Sum_probs=30.6
Q ss_pred chhhhhhhhcccCCCccc-----ccccccceeecCCCCCCCccEEEEecccccCccccchhhhcCCCHHHHHHHHH
Q 039224 6 TSYRRKKVEKEELPEDTE-----LYRFFSYIYNTNQGIDNAVPVLLVDGYNVCGYWPKLENHFIKGRLDVARQKLI 76 (179)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lIVDGYNvI~a~p~L~~~~~~~~Le~AR~~Li 76 (179)
..|||-++.. +-|.|.. ++|-|+.+ .-|+++||||= .+.+..|++-|-
T Consensus 53 ~~YRrf~i~~-~g~DDya~m~Evl~RR~~r~--------~~PDLiliDGG--------------kgQl~~a~~vl~ 105 (220)
T 2nrt_A 53 GDYRRYKIEQ-DHPDDYESIRTVVKRRYSKH--------PLPNLLFVDGG--------------IGQVNAAIEALK 105 (220)
T ss_dssp GGCEEEEEEC-SSCCHHHHHHHHHHHHHTTS--------CCCSEEEESSS--------------HHHHHHHHHHHH
T ss_pred hhCceeeCCC-CCCCHHHHHHHHHHHHhccC--------CCCCEEEEeCC--------------HHHHHHHHHHHH
Confidence 3688888866 4445543 45656554 47899999982 235666776664
No 71
>1z3q_A Thaumatin-like protein; beta sandwich, antifungal protein; 1.70A {Musa acuminata}
Probab=26.42 E-value=9.3 Score=31.07 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=8.2
Q ss_pred cEEEEecccc
Q 039224 43 PVLLVDGYNV 52 (179)
Q Consensus 43 ~~lIVDGYNv 52 (179)
++=|||||||
T Consensus 96 DVSlVDGfNl 105 (200)
T 1z3q_A 96 DISLVDGFNV 105 (200)
T ss_dssp EEECTTCBSS
T ss_pred eeeeeccccC
Confidence 4558999998
No 72
>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium}
Probab=26.04 E-value=9.6 Score=31.40 Aligned_cols=11 Identities=55% Similarity=0.815 Sum_probs=8.3
Q ss_pred cEEEEeccccc
Q 039224 43 PVLLVDGYNVC 53 (179)
Q Consensus 43 ~~lIVDGYNvI 53 (179)
++=|||||||=
T Consensus 105 DVSlVDGfNlP 115 (222)
T 2ahn_A 105 DVSLVDGFNLP 115 (222)
T ss_dssp EEECTTCBSSC
T ss_pred eeecccccccc
Confidence 34489999983
No 73
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=26.01 E-value=36 Score=29.88 Aligned_cols=76 Identities=13% Similarity=-0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCC-CceeecCeEEEeCCC-CChHHHHHHHHHHHhhCCC--CcEEEEcCCHH
Q 039224 73 QKLIEELVEFSMIREVKVVVVFDALMSGLPT-HKEEFIGVDIVFPGE-TCADAWIEKEIVALREDGC--PKVWVVTSDHL 148 (179)
Q Consensus 73 ~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~-~~~~~~gi~VvfT~~-~TAD~~IErlv~~~~~~~~--~~V~VVTSD~~ 148 (179)
+..++.+......+-.-..+=|++...+... .........-.|... ...|..|-+++..|.+.|- ..++|.|||+-
T Consensus 185 ~~a~~~i~~~~~~~Pffl~~~~~~~h~P~~~~~~~~~~~~~~~Y~~~v~~~D~~vG~il~~L~~~gl~dnTiViftSDhG 264 (502)
T 4fdi_A 185 QEALDFIKRQARHHPFFLYWAVDATHAPVYASKPFLGTSQRGRYGDAVREIDDSIGKILELLQDLHVADNTFVFFTSDNG 264 (502)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECCTTSSSCCBCGGGTTCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSC
T ss_pred HHHHHHHHhhcCCCCceEEeeccCccCCccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEecCCC
Confidence 3445555544444445566666665443211 111000000012222 3679999999999987542 35999999985
No 74
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=25.89 E-value=9.6 Score=31.11 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.7
Q ss_pred cEEEEeccccc
Q 039224 43 PVLLVDGYNVC 53 (179)
Q Consensus 43 ~~lIVDGYNvI 53 (179)
++=|||||||=
T Consensus 101 DVSlVDGfNlP 111 (206)
T 2vhk_A 101 DISNIKGFNVP 111 (206)
T ss_dssp EEECTTCBSSC
T ss_pred eeeccCCccCC
Confidence 45589999983
No 75
>1aun_A PR-5D; antifungal protein, pathogenesis-related protein, osmotin, thaumatin-like protein; 1.80A {Nicotiana tabacum} SCOP: b.25.1.1 PDB: 2i0w_A 1pcv_A
Probab=25.33 E-value=10 Score=31.03 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.1
Q ss_pred cEEEEecccc
Q 039224 43 PVLLVDGYNV 52 (179)
Q Consensus 43 ~~lIVDGYNv 52 (179)
++=|||||||
T Consensus 98 DVSlVDGfNl 107 (208)
T 1aun_A 98 DISVIDGFNI 107 (208)
T ss_dssp EEECTTCBSS
T ss_pred eeecccCccc
Confidence 3558999998
No 76
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone sulfate, dehydroepiandrosterone sulfate, human placental enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP: c.76.1.2
Probab=25.30 E-value=33 Score=30.56 Aligned_cols=31 Identities=19% Similarity=-0.004 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHhhCC--CCcEEEEcCCHHH
Q 039224 119 TCADAWIEKEIVALREDG--CPKVWVVTSDHLQ 149 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~--~~~V~VVTSD~~i 149 (179)
...|..|.+++..+.+.| ...++|+|||+-.
T Consensus 292 ~~~D~~vG~il~~L~~~g~~dnTiviftsDhG~ 324 (562)
T 1p49_A 292 EEMDWSVGQILNLLDELRLANDTLIYFTSDQGA 324 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHcCCccCeEEEEECCCCc
Confidence 478999999999998753 1369999999854
No 77
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=25.00 E-value=47 Score=29.24 Aligned_cols=28 Identities=29% Similarity=0.171 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCCHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSDHL 148 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD~~ 148 (179)
.=|..|...+.-+.+. +..++|||+||.
T Consensus 244 ~fD~AV~~al~~~~~~-~dTLIIVTADH~ 271 (400)
T 3a52_A 244 GFANAIEVVEQYIRQH-PDTLLVVTADHN 271 (400)
T ss_dssp HHHHHHHHHHHHHHHC-CSEEEEEECSCE
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 4467777777766653 368999999995
No 78
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=24.97 E-value=85 Score=25.54 Aligned_cols=52 Identities=25% Similarity=0.173 Sum_probs=39.4
Q ss_pred EEeCCC-CChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCceEecHHH
Q 039224 113 IVFPGE-TCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAFVWSSKA 165 (179)
Q Consensus 113 VvfT~~-~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~~iSs~e 165 (179)
+++=.. .|+-.+|+.+....++.+ .++++||+-......+...|-..++-.+
T Consensus 21 vIgLGsGST~~~~i~~L~~~~~~~~-~~i~~VttS~~t~~~l~~~Gi~l~~l~~ 73 (225)
T 3l7o_A 21 IVGLGTGSTAYYFVEEVGRRVQEEG-LQVIGVTTSSRTTAQAQALGIPLKSIDE 73 (225)
T ss_dssp EEEECCSTTHHHHHHHHHHHHHHHC-CCCEEEESSHHHHHHHHHHTCCBCCGGG
T ss_pred EEEECCcHHHHHHHHHHHHhhhhcC-CCEEEEcCCHHHHHHHhccCceEEecCc
Confidence 455555 599999998877665432 4799999999988899888988777543
No 79
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=24.93 E-value=40 Score=27.61 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=28.3
Q ss_pred CcEEEEcCCHHHHHHHHhCCceEecHHHHHHHHHH
Q 039224 138 PKVWVVTSDHLQQHAAYGAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 138 ~~V~VVTSD~~iq~~a~~~GA~~iSs~ef~~~l~~ 172 (179)
.+|.|.+.|.. ...|+..||..+..++|++.|..
T Consensus 73 ~rV~Vfa~~~~-~~~Ak~aGad~vg~edLi~kik~ 106 (234)
T 2wwq_5 73 VRVAVFTQGAN-AEAAKAAGAELVGMEDLADQIKK 106 (234)
T ss_dssp CCEEEECSSSC-HHHHHHHTCSEECSHHHHHHHHH
T ss_pred cEEEEEcCchh-HHHHHHcCCCEEcHHHHHHHHHc
Confidence 57899888875 67788999999999999988754
No 80
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.82 E-value=1.6e+02 Score=19.58 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCCH--HHHHHHHhCCceE-----ecHHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSDH--LQQHAAYGAGAFV-----WSSKALVSEVSLII 174 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD~--~iq~~a~~~GA~~-----iSs~ef~~~l~~~~ 174 (179)
++-++++.+-...+ .-.|+++|+.. .....+...||.- ++.++|...|....
T Consensus 66 ~g~~~~~~l~~~~~---~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 66 EGLFWLHEIKRQYR---DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CHHHHHHHHHHHCT---TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCc---CCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 45566666554432 24588887544 4556677788743 58889988887654
No 81
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=24.69 E-value=33 Score=24.37 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred ccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCC-CChHHHHHHH
Q 039224 50 YNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGE-TCADAWIEKE 128 (179)
Q Consensus 50 YNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~-~TAD~~IErl 128 (179)
|+.+.+-|.++..+...|++..+++|.+.|..+...... |.+.. +.+.-.....++ .-. +-.|.|.+-+
T Consensus 21 Y~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~~gGp~~-----Y~~~~-g~p~l~~~H~~~----~I~~~~f~~wl~~~ 90 (123)
T 2bmm_A 21 YEGVAADPVLRPMYPEEDLGPAEERLRLFLMQYWGGPRT-----YSERR-GHPRLRMRHFPY----RIGAEERDRWLTHM 90 (123)
T ss_dssp HHHHHTCTTTGGGSCCSCCHHHHHHHHHHHHHHHTSCCH-----HHHHS-CCCCHHHHTTTS----CCCHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCcc-----cCCCC-CChhHHHccCCC----CCCHHHHHHHHHHH
Confidence 667777888988887689999999999999997654322 33321 111101111222 223 4788999988
Q ss_pred HHHHhh
Q 039224 129 IVALRE 134 (179)
Q Consensus 129 v~~~~~ 134 (179)
...+.+
T Consensus 91 ~~al~e 96 (123)
T 2bmm_A 91 RAAVDD 96 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 82
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=24.68 E-value=46 Score=22.96 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCC-HHHHHHHHhCCceEecHH
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSD-HLQQHAAYGAGAFVWSSK 164 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD-~~iq~~a~~~GA~~iSs~ 164 (179)
..+|.+|-..+..++ +++||.| +..+.. |-.++++-
T Consensus 101 ~~~D~liaA~A~~~~------~~lvT~d~~df~~~----~l~~~~P~ 137 (139)
T 2h1c_A 101 AAADGYIAATAKQHS------LTVATRDTGSFFAA----DVAVFNPW 137 (139)
T ss_dssp CHHHHHHHHHHHHHT------CEEECSCCHHHHHT----TCCEECTT
T ss_pred CccHHHHHHHHHHcC------CeEEECCHHHHhhC----CCeeeCCC
Confidence 479999988776543 5899999 776654 67776654
No 83
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.57 E-value=1.6e+02 Score=19.70 Aligned_cols=95 Identities=18% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCCC------ChHHHHHHHHHHHhhCCCCcEEEEc
Q 039224 71 ARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGET------CADAWIEKEIVALREDGCPKVWVVT 144 (179)
Q Consensus 71 AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~~------TAD~~IErlv~~~~~~~~~~V~VVT 144 (179)
.|+.|...|.. .|++++.+-|+...-.. -......+++..-. +.-++++++-.. .. .-.|+|+|
T Consensus 18 ~~~~l~~~L~~----~g~~v~~~~~~~~a~~~---l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~-~~--~~~ii~~s 87 (136)
T 3kto_A 18 ARAALSKLLSP----LDVTIQCFASAESFMRQ---QISDDAIGMIIEAHLEDKKDSGIELLETLVKR-GF--HLPTIVMA 87 (136)
T ss_dssp HHHHHHHHHTT----SSSEEEEESSHHHHTTS---CCCTTEEEEEEETTGGGBTTHHHHHHHHHHHT-TC--CCCEEEEE
T ss_pred HHHHHHHHHHH----CCcEEEEeCCHHHHHHH---HhccCCCEEEEeCcCCCCCccHHHHHHHHHhC-CC--CCCEEEEE
Confidence 34555566654 36888755554321110 11234677777543 222444443332 21 24688888
Q ss_pred CC--HHHHHHHHhCCce-----EecHHHHHHHHHHHHh
Q 039224 145 SD--HLQQHAAYGAGAF-----VWSSKALVSEVSLIIY 175 (179)
Q Consensus 145 SD--~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~~ 175 (179)
+. ......+...||. .++.++|...|.+...
T Consensus 88 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 88 SSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 64 4456677788875 4688999988876543
No 84
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.35 E-value=45 Score=29.32 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhccc-cCCceEEEEEcCCCCCCCCCceeecCeEEEeCC
Q 039224 67 RLDVARQKLIEELVEFSM-IREVKVVVVFDALMSGLPTHKEEFIGVDIVFPG 117 (179)
Q Consensus 67 ~Le~AR~~Li~~L~~y~~-~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~ 117 (179)
.++..|.++++.|..+.. ..|.++.|.-|+...-+...--..-|++++...
T Consensus 291 ~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~elG~~vv~v~ 342 (458)
T 1mio_B 291 SIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELGAIPKYVV 342 (458)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHCCCEEEEEE
Confidence 477888999999999864 788899998887532211111123688877643
No 85
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=23.94 E-value=65 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCCCC
Q 039224 70 VARQKLIEELVEFSMIREVKVVVVFDALMSG 100 (179)
Q Consensus 70 ~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~ 100 (179)
.+.++|+..-..... .|+. ++|||||.+.
T Consensus 45 ~aa~aL~~aq~~L~~-~G~~-L~I~DaYRP~ 73 (202)
T 1r44_A 45 ELAESLLKAKELAAT-QGYG-LLLWDGYRPK 73 (202)
T ss_dssp HHHHHHHHHHHHTTS-SSEE-EEEEECCCCH
T ss_pred HHHHHHHHHHHHHHh-CCCe-EEEEEccCCH
Confidence 455566655544432 3554 6899999754
No 86
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.85 E-value=1.8e+02 Score=20.97 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=39.3
Q ss_pred CeEEEeCCC----CChHHHHHHHHHHHhhCCCCcEEEEcC--CHHHHHHHHhCCc-----eEecHHHHHHHHHHH
Q 039224 110 GVDIVFPGE----TCADAWIEKEIVALREDGCPKVWVVTS--DHLQQHAAYGAGA-----FVWSSKALVSEVSLI 173 (179)
Q Consensus 110 gi~VvfT~~----~TAD~~IErlv~~~~~~~~~~V~VVTS--D~~iq~~a~~~GA-----~~iSs~ef~~~l~~~ 173 (179)
...++.+.- .+.=++++++-.... ...-.|+++|+ +......+...|| +.++.++|...|++.
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~-~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEE-LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTT-TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCC-CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 345666642 255566665433211 11235888987 4556667778898 567999999888764
No 87
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=23.59 E-value=81 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=37.1
Q ss_pred ecccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCC
Q 039224 48 DGYNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALM 98 (179)
Q Consensus 48 DGYNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~ 98 (179)
-|+|++..|..+.. ..+++.++......+..|....=.+|.|||=-..
T Consensus 128 ~~~~i~~~~~~~~~---~p~~~~~~~i~~~~~~~~~~g~~d~v~lvyn~f~ 175 (286)
T 3oaa_G 128 VGGNVVAQVTGMGD---NPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFI 175 (286)
T ss_dssp HCCCEEEEECCCTT---CCCHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEE
T ss_pred cCCCeEEeeccccC---CCCHHHHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence 47788888777754 4689999998888888887766568999987653
No 88
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=23.47 E-value=98 Score=30.47 Aligned_cols=125 Identities=18% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCccEEEEecccccCccccchhh-------hcCCCHHHHHH---HHHHHHHhccccCC--ceEEEEEcCCCCCCCCCcee
Q 039224 40 NAVPVLLVDGYNVCGYWPKLENH-------FIKGRLDVARQ---KLIEELVEFSMIRE--VKVVVVFDALMSGLPTHKEE 107 (179)
Q Consensus 40 ~~~~~lIVDGYNvI~a~p~L~~~-------~~~~~Le~AR~---~Li~~L~~y~~~~g--~~V~VVFDa~~~~~~~~~~~ 107 (179)
..+.|+|.|-.=|++++.-|... +...-|++.|. .+-+.|.+...-.. .+++|..+=+.... ..+.
T Consensus 59 ~~~~~~i~d~~v~l~~~d~le~~~~~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~~~t--~~~~ 136 (977)
T 2wp8_J 59 IGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHT--FVER 136 (977)
T ss_dssp TSBEEEEECHHHHHHHHHHHTCTTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTBTTT--CCC-
T ss_pred CCCeEEEecHHHHHHHHHHhhcccccCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccchhh--cccC
Confidence 35788999987777766544321 01123566666 35566666554333 56655544333221 0001
Q ss_pred ecCeEEEeCCCCChHHHHHHHHHHHhhC--C-CCcEEEEcCCHHHHHHHHh---CCceEecHHHHHHHH
Q 039224 108 FIGVDIVFPGETCADAWIEKEIVALRED--G-CPKVWVVTSDHLQQHAAYG---AGAFVWSSKALVSEV 170 (179)
Q Consensus 108 ~~gi~VvfT~~~TAD~~IErlv~~~~~~--~-~~~V~VVTSD~~iq~~a~~---~GA~~iSs~ef~~~l 170 (179)
..|= |.+.-.|..|...+.=.... + ...|+++|+|..-...+.. .|..++|..|+++.+
T Consensus 137 ~~~e----s~~~r~~r~i~~~~~wy~~hl~~~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~~y~~~~ 201 (977)
T 2wp8_J 137 LPNE----TINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELL 201 (977)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHGGGTCEEEEEECC-----------CCCSCEEEHHHHHHTS
T ss_pred ccCC----ChhhhhHHHHHHHHHHHHHhccccCCCEEEEeCCHHHHHHHhhhccCCcEEEEHHHHHHhc
Confidence 0000 11234566666555322221 0 2469999999999999998 999999999998876
No 89
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.46 E-value=1.5e+02 Score=19.15 Aligned_cols=54 Identities=17% Similarity=0.032 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEc-CCHHHHHHHHhCCce-----EecHHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVT-SDHLQQHAAYGAGAF-----VWSSKALVSEVSLII 174 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVT-SD~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~ 174 (179)
+.-++++.+-...... .-.+++++ .|......+...||. .++.++|...+....
T Consensus 64 ~g~~~~~~l~~~~~~~-~~~ii~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 64 NGYLICGKLKKDDDLK-NVPIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp BHHHHHHHHHHSTTTT-TSCEEEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcccc-CCCEEEEecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 4555555544431111 13455553 334455667778874 358888888887653
No 90
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=23.39 E-value=1.1e+02 Score=27.27 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcCCHHHHHHH-HhCCce
Q 039224 123 AWIEKEIVALREDGCPKVWVVTSDHLQQHAA-YGAGAF 159 (179)
Q Consensus 123 ~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a-~~~GA~ 159 (179)
++|+.++....+.| .+|.+||++..+-..- .+.|+.
T Consensus 380 ~~ve~l~e~a~~~G-~~v~~vs~~~~eG~ql~~~fgGI 416 (441)
T 3e20_C 380 LLSEWLAEHYKDYG-ANLEFVSDRSQEGMQFVKGFGGI 416 (441)
T ss_dssp EHHHHHHHHGGGGS-CCEEEECTTSHHHHHHHHTSTTE
T ss_pred hHHHHHHHHHHHcC-CEEEEECCCCHHHHHHHHcCCcE
Confidence 57788888888765 6999999999977654 566653
No 91
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=23.22 E-value=1.6e+02 Score=19.16 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCCc-----eEecHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAGA-----FVWSSKALVSEVSLI 173 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~GA-----~~iSs~ef~~~l~~~ 173 (179)
+.-++++++-...+ .-.++++|+. ......+...|| +.++.++|...+.+.
T Consensus 61 ~g~~~~~~l~~~~~---~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1srr_A 61 DGIEILKRMKVIDE---NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 118 (124)
T ss_dssp CHHHHHHHHHHHCT---TCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---CCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHH
Confidence 55566666543322 2467777763 445556666776 346888998888764
No 92
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=22.34 E-value=49 Score=24.11 Aligned_cols=71 Identities=13% Similarity=-0.067 Sum_probs=47.2
Q ss_pred ccccCccccchhhhcCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCCCceeecCeEEEeCCC-CChHHHHHHH
Q 039224 50 YNVCGYWPKLENHFIKGRLDVARQKLIEELVEFSMIREVKVVVVFDALMSGLPTHKEEFIGVDIVFPGE-TCADAWIEKE 128 (179)
Q Consensus 50 YNvI~a~p~L~~~~~~~~Le~AR~~Li~~L~~y~~~~g~~V~VVFDa~~~~~~~~~~~~~gi~VvfT~~-~TAD~~IErl 128 (179)
|..+.+-|.++..+...|++..+++|.+.|..+....+. |.|. + . .....++ .-. +-.|.|++-+
T Consensus 33 Y~~v~~Dp~l~~~F~~~d~~~~~~~l~~Fl~~~~GGp~~-----Y~g~--~-m--~~~H~~~----~I~~~~fd~wl~~l 98 (136)
T 2gkm_A 33 FVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEP-----YTGA--P-M--KQVHQGR----GITMHHFSLVAGHL 98 (136)
T ss_dssp HHHHHHCTTTGGGGTTSCHHHHHHHHHHHHHHHTTCSSC-----CCSC--C-H--HHHHTTS----CCCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCCCC-----CCCC--C-H--HHHHcCC----CCCHHHHHHHHHHH
Confidence 677777788888887779999999999999998753310 1111 0 0 0111222 223 4788999988
Q ss_pred HHHHhh
Q 039224 129 IVALRE 134 (179)
Q Consensus 129 v~~~~~ 134 (179)
...+.+
T Consensus 99 ~~al~e 104 (136)
T 2gkm_A 99 ADALTA 104 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 93
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=21.65 E-value=1.3e+02 Score=25.68 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=24.8
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCce
Q 039224 125 IEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGAF 159 (179)
Q Consensus 125 IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA~ 159 (179)
++.++....+.| .+|.|||||+..-..-.+.|+.
T Consensus 297 ~~~L~e~~~~~G-~~V~ivs~~~e~G~qL~~lGGI 330 (347)
T 2qi2_A 297 GRRSLSIAQTVG-TRIHIVSVSNDPGQIVKKFGGF 330 (347)
T ss_dssp HHHHHHHHHHHT-CEEEEECTTSHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcC-CEEEEECCCCcchHHHHhcCCE
Confidence 666666666544 6899999999886555777764
No 94
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=21.41 E-value=68 Score=27.29 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCCCCCC-------ceeecCeEEEeCCCCChH----HHHHHHHHHHhhCCCCcEEEEc
Q 039224 87 EVKVVVVFDALMSGLPTH-------KEEFIGVDIVFPGETCAD----AWIEKEIVALREDGCPKVWVVT 144 (179)
Q Consensus 87 g~~V~VVFDa~~~~~~~~-------~~~~~gi~VvfT~~~TAD----~~IErlv~~~~~~~~~~V~VVT 144 (179)
+..|+|||.|....+.+. .-...|++|+-.+.-|.. .|.-|+...++.. .+|.|-=
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP~~--G~I~IFd 139 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHDFLWRIEKQVPAA--GMVGVFD 139 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSCTTHHHHTTCCCT--TCEEEEE
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCCHHHHHHHhCCCC--CeEEEEe
Confidence 379999999986443221 124579999877654443 4788999999864 4566553
No 95
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.36 E-value=1.5e+02 Score=19.70 Aligned_cols=55 Identities=9% Similarity=-0.090 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCCce-----EecHHHHHHHHHHHHh
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAGAF-----VWSSKALVSEVSLIIY 175 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~~ 175 (179)
++-++++.+-.... ...-.|+++|+. ......+...||. .++.++|...|.....
T Consensus 68 ~g~~~~~~l~~~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 68 DGFSICHRIKSTPA-TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp CHHHHHHHHHTSTT-TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCcc-ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 55566665443111 112457777764 4445667788874 3588899888877653
No 96
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=21.19 E-value=1.8e+02 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=15.9
Q ss_pred hCCceEecHHHHHHHHHH
Q 039224 155 GAGAFVWSSKALVSEVSL 172 (179)
Q Consensus 155 ~~GA~~iSs~ef~~~l~~ 172 (179)
..+|.++|+++++.++..
T Consensus 171 ~~~a~V~tt~e~l~~l~~ 188 (211)
T 3oqp_A 171 SRFAAVASTDEWIAAVQG 188 (211)
T ss_dssp HHTCEEECHHHHHHHHHH
T ss_pred hccEEEeEHHHHHHHHhc
Confidence 589999999999998864
No 97
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=21.18 E-value=65 Score=23.55 Aligned_cols=34 Identities=15% Similarity=-0.124 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEcCCHHHHHHHHhCCc
Q 039224 119 TCADAWIEKEIVALREDGCPKVWVVTSDHLQQHAAYGAGA 158 (179)
Q Consensus 119 ~TAD~~IErlv~~~~~~~~~~V~VVTSD~~iq~~a~~~GA 158 (179)
..+|..|-..+...+ +.++|.|+.+.+.+...|-
T Consensus 122 ~~~Dal~lA~A~~~~------~~LvT~D~~l~~~a~~~Gi 155 (156)
T 2fe1_A 122 TVYDAAYVALAEKIG------GKLLTLDRQLAEKFPALVT 155 (156)
T ss_dssp CHHHHHHHHHHHHHT------CEEECSCHHHHHHCTTTBC
T ss_pred CHHHHHHHHHHHHcC------CCEEeCCHHHHHHHHHcCC
Confidence 357888887776653 4599999999988877663
No 98
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=20.82 E-value=40 Score=29.51 Aligned_cols=89 Identities=7% Similarity=-0.029 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhccc-cCCceEEEEEcCCCCCCCCCce-eecCeEEEeCCCC-ChHHHHHHHHHHHhhCCCCcEEEE-
Q 039224 68 LDVARQKLIEELVEFSM-IREVKVVVVFDALMSGLPTHKE-EFIGVDIVFPGET-CADAWIEKEIVALREDGCPKVWVV- 143 (179)
Q Consensus 68 Le~AR~~Li~~L~~y~~-~~g~~V~VVFDa~~~~~~~~~~-~~~gi~VvfT~~~-TAD~~IErlv~~~~~~~~~~V~VV- 143 (179)
++..|.++.+.|..+.. ..|.++.|+-|+...-+..+-- ..-|++|+..... .-..+.++.+..+.. .+.|+
T Consensus 287 i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~l~~l~~----~~~v~~ 362 (437)
T 3aek_A 287 TAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEIATPFLHKAIMAPDLALLPS----NTALTE 362 (437)
T ss_dssp HHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEEEESCCCHHHHHHHHTTSBT----TCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcCCEEEEEEecCCCHHHHHHHHHhcCC----CCEEEe
Confidence 34558889999999875 7888888887754322111111 3468888887543 222444555544432 22232
Q ss_pred -cCCHHHHHHHHhCCceE
Q 039224 144 -TSDHLQQHAAYGAGAFV 160 (179)
Q Consensus 144 -TSD~~iq~~a~~~GA~~ 160 (179)
.++.++.+.++..++-.
T Consensus 363 ~~d~~e~~~~i~~~~pDl 380 (437)
T 3aek_A 363 GQDLEAQLDRHEAINPDL 380 (437)
T ss_dssp ECCHHHHHHHHHHHCCSE
T ss_pred CCCHHHHHHHHhccCCCE
Confidence 23335555565555543
No 99
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.12 E-value=2e+02 Score=19.17 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEcCC--HHHHHHHHhCCce-----EecHHHHHHHHHHHH
Q 039224 120 CADAWIEKEIVALREDGCPKVWVVTSD--HLQQHAAYGAGAF-----VWSSKALVSEVSLII 174 (179)
Q Consensus 120 TAD~~IErlv~~~~~~~~~~V~VVTSD--~~iq~~a~~~GA~-----~iSs~ef~~~l~~~~ 174 (179)
++-++++.+-...+ .-.|+|+|+. ......+...||. .++.++|...|....
T Consensus 63 ~g~~~~~~l~~~~~---~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 63 SGMDILREIKKITP---HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp CHHHHHHHHHHHCT---TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCC---CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 66677766554432 2468888875 4446677888875 368888888876654
Done!