BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039225
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
+ +++ C C + +G+ F E+ +D + +E+I+R+G + VPQ+F++ +
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 225 GGLVALNSLRNSGTFD 240
GG L +L G D
Sbjct: 63 GGYDDLYALDARGGLD 78
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
I ++R NC C R ++G+K+ +I+ R++ + R G + PQ+F+ D
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGVKYTDIDAST-SLRQEMVQRANGRNTFPQIFIGDYHV 66
Query: 225 GGLVALNSLRNSGTFDERFREM 246
GG L +L N G D +++
Sbjct: 67 GGCDDLYALENKGKLDSLLQDV 88
>pdb|1H75|A Chain A, Structural Basis For The Thioredoxin-Like Activity Profile
Of The Glutaredoxin-Like Protein Nrdh-Redoxin From
Escherichia Coli
Length = 81
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
RI+ ++R++C C A +R + RG F INVD P E +R G Q+P V D
Sbjct: 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60
Query: 224 FGGL 227
+ G
Sbjct: 61 WSGF 64
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR----EKELIRRTGSSQVPQVFLN 220
+ +S++ C CT V+ FK+ G++ + + +D P+ +K L R TG VP VF+
Sbjct: 21 VVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVC 80
Query: 221 DKLFGGLVALNSLRNSGTFDERFREMLGR 249
K GG L G + E G+
Sbjct: 81 GKHIGGCTDTVKLNRKGDLELMLAEANGK 109
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
+ +++ C + +G+ F E+ +D + +E+I+R+G + VPQ+F++ +
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 225 GGLVALNSLRNSGTFD 240
GG L +L G D
Sbjct: 63 GGYDDLYALDARGGLD 78
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
+ ++R C C + ++G +F EI+ P E+ R+G + PQ+F+
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 225 GGLVALNSLRNSGTFDERFR 244
GG L +L + G D +
Sbjct: 68 GGCDDLYALEDEGKLDSLLK 87
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLND 221
+ FS+++C CT ++ F + + + +D+ + L + TG VP++F+N
Sbjct: 37 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 96
Query: 222 KLFGGLVALNSLRNSG 237
GG + L G
Sbjct: 97 TFIGGATDTHRLHKEG 112
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLND 221
+ FS+++C CT ++ F + + + +D+ + L + TG VP++F+N
Sbjct: 51 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 110
Query: 222 KLFGGLVALNSLRNSG 237
GG + L G
Sbjct: 111 TFIGGATDTHRLHKEG 126
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR---EKELIRRTGSSQVPQVFLND 221
+ FS+++C CT ++ F + + + +D+ + L + TG VP++F+N
Sbjct: 29 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 88
Query: 222 KLFGGLVALNSLRNSG 237
GG + L G
Sbjct: 89 TFIGGATDTHRLHKEG 104
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK--ELIRRTGS-----SQVPQ 216
++ ++R+ C C +++F++ + F E +D + R K + ++G S VPQ
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQSGKVIFPISTVPQ 64
Query: 217 VFLNDKLFGGLVALNS 232
+F++D+ GG L +
Sbjct: 65 IFIDDEHIGGFTELKA 80
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF----PPREKELIRRTGSSQVPQVFLN 220
+ +S++ C + V+ FK+ + + + +D P +K L R TG VP VF+
Sbjct: 20 VVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIG 79
Query: 221 DKLFGGLVALNSLRNSGTFDERFREMLGRKCSG 253
K GG L G + E +K G
Sbjct: 80 GKHIGGCTDTVKLYRKGELEPLLSEANAKKSQG 112
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 163 GRISFFSRSNCRDCTAVRRFF-----KQRGLKFVEINVDVFPPREKELIRR-TGSSQVPQ 216
G++ F + C C + KQ L+FV+I ++ +++ TG+ VP+
Sbjct: 13 GKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPR 72
Query: 217 VFLNDKLFGGLVALNSLRNSGTFDERFREM 246
VF+ GG L SL+ SG R +++
Sbjct: 73 VFIGKDCIGGCSDLVSLQQSGELLTRLKQI 102
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLND 221
+ FS++ C C V++ Q G + + +D + L TG VP VF+
Sbjct: 22 VVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGG 81
Query: 222 KLFGG 226
K GG
Sbjct: 82 KQIGG 86
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLND 221
+ FS++ C C V++ Q G + + +D + L TG VP VF+
Sbjct: 23 VVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGG 82
Query: 222 KLFGG 226
K GG
Sbjct: 83 KQIGG 87
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 163 GRISFFSRSNCRDCTAVRRF-----FKQRGLKFVEINVDVFPPREKELIRR-TGSSQVPQ 216
G++ F + C C + FK+ L+FV+I ++ +++ TG+ VP+
Sbjct: 12 GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPR 71
Query: 217 VFLNDKLFGGLVALNSLRNSGTFDERFREM 246
VF+ + GG L S+ G R +++
Sbjct: 72 VFIGKECIGGCTDLESMHKRGELLTRLQQV 101
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 160 KIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR---TGSSQVPQ 216
+++ IS F++ C C ++ +GL F EI + + ++ +G + VPQ
Sbjct: 167 QVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILG----HDATIVSVRAVSGRTTVPQ 222
Query: 217 VFLNDKLFGG 226
VF+ K GG
Sbjct: 223 VFIGGKHIGG 232
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 34.7 bits (78), Expect = 0.072, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV-FPPREKELIRRTGSSQVPQVFL 219
+ +I ++ S C C K++G++F E +D RE R G +PQ+F+
Sbjct: 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFI 73
Query: 220 NDKLFGGLVALNSLRNSGTFD 240
+D+ GG + +L +G D
Sbjct: 74 DDQHIGGCDDIYALDGAGKLD 94
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 184 KQRGLKFVEINVDVFPPREKELIRR-TGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDER 242
KQ L+FV+I ++ +++ TG+ VP+VF+ GG L SL+ SG R
Sbjct: 38 KQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTR 97
Query: 243 FREM 246
+++
Sbjct: 98 LKQI 101
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRR-TGSSQVPQVF 218
+ R+ FS+S C T V+ F G++ + +D R +E++ T VP +F
Sbjct: 16 RSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIF 75
Query: 219 LNDKLFGGLVALNSLRNSGTFDERFREMLG 248
+N GG SG + +E L
Sbjct: 76 VNKVHVGGCDQTFQAYQSGLLQKLLQEDLA 105
>pdb|3IC4|A Chain A, The Crystal Structure Of The Glutaredoxin(Grx-1) From
Archaeoglobus Fulgidus
Length = 92
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPRE-KELIRR----TGSSQVPQVFLNDK 222
+ S C C F K+ G+ F I +D E K++I + +GS VP V DK
Sbjct: 17 YGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDK 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,191,365
Number of Sequences: 62578
Number of extensions: 282042
Number of successful extensions: 474
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 23
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)