Query 039225
Match_columns 327
No_of_seqs 255 out of 1428
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10824 glutaredoxin-4; Provi 99.9 1.3E-23 2.7E-28 176.7 11.9 89 161-249 13-106 (115)
2 TIGR02189 GlrX-like_plant Glut 99.9 1.1E-23 2.5E-28 171.6 11.3 88 161-248 6-96 (99)
3 PHA03050 glutaredoxin; Provisi 99.9 5.7E-23 1.2E-27 170.4 11.8 87 162-248 12-104 (108)
4 TIGR00365 monothiol glutaredox 99.9 2.1E-22 4.5E-27 163.6 10.6 83 161-243 10-97 (97)
5 cd03031 GRX_GRX_like Glutaredo 99.9 3.8E-22 8.3E-27 174.1 9.2 107 164-273 1-123 (147)
6 PRK10638 glutaredoxin 3; Provi 99.9 1.7E-21 3.7E-26 152.5 10.7 83 162-244 1-83 (83)
7 cd03028 GRX_PICOT_like Glutare 99.9 2.3E-21 5E-26 154.8 10.1 80 161-240 6-90 (90)
8 TIGR02181 GRX_bact Glutaredoxi 99.8 3.6E-21 7.8E-26 148.3 9.4 79 165-243 1-79 (79)
9 KOG1752 Glutaredoxin and relat 99.8 7.1E-21 1.5E-25 157.5 11.2 88 161-248 12-102 (104)
10 PTZ00062 glutaredoxin; Provisi 99.8 6.6E-20 1.4E-24 167.8 11.2 85 161-245 111-200 (204)
11 cd03418 GRX_GRXb_1_3_like Glut 99.8 1.4E-19 3E-24 137.2 10.4 74 164-237 1-75 (75)
12 COG0278 Glutaredoxin-related p 99.8 1.1E-19 2.3E-24 148.7 9.0 86 161-246 13-104 (105)
13 cd03027 GRX_DEP Glutaredoxin ( 99.8 2.1E-19 4.6E-24 137.1 9.9 73 163-235 1-73 (73)
14 COG0695 GrxC Glutaredoxin and 99.8 3.5E-19 7.5E-24 140.2 9.2 76 164-239 2-79 (80)
15 TIGR02180 GRX_euk Glutaredoxin 99.8 7.4E-19 1.6E-23 135.0 9.1 79 165-243 1-84 (84)
16 cd03419 GRX_GRXh_1_2_like Glut 99.8 1.6E-18 3.4E-23 133.1 8.9 78 164-241 1-81 (82)
17 cd03029 GRX_hybridPRX5 Glutare 99.8 3.3E-18 7.1E-23 129.9 9.9 70 164-234 2-71 (72)
18 TIGR02190 GlrX-dom Glutaredoxi 99.8 3.7E-18 8E-23 132.7 10.1 75 159-234 4-78 (79)
19 PRK11200 grxA glutaredoxin 1; 99.7 1.4E-17 3.1E-22 130.6 10.0 74 163-236 1-81 (85)
20 TIGR02183 GRXA Glutaredoxin, G 99.7 1.7E-17 3.6E-22 131.4 9.6 73 165-237 2-81 (86)
21 cd02066 GRX_family Glutaredoxi 99.7 3.6E-17 7.8E-22 120.1 10.3 71 164-234 1-71 (72)
22 KOG2824 Glutaredoxin-related p 99.7 1.5E-17 3.3E-22 156.9 7.1 136 161-304 129-281 (281)
23 cd03030 GRX_SH3BGR Glutaredoxi 99.7 8.4E-17 1.8E-21 130.3 9.4 80 165-244 2-91 (92)
24 KOG0911 Glutaredoxin-related p 99.7 1.5E-16 3.3E-21 146.6 8.7 85 162-246 138-227 (227)
25 PF00462 Glutaredoxin: Glutare 99.7 4.1E-16 8.9E-21 114.6 8.6 60 165-224 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.6 6.7E-16 1.4E-20 154.2 10.0 83 163-247 2-92 (410)
27 TIGR02194 GlrX_NrdH Glutaredox 99.5 1.4E-14 3.1E-19 110.4 7.7 63 165-228 1-64 (72)
28 PRK10329 glutaredoxin-like pro 99.5 3.1E-14 6.6E-19 112.2 8.9 65 163-228 1-65 (81)
29 cd04447 DEP_BRCC3 DEP (Disheve 99.4 3.3E-14 7.1E-19 115.1 2.7 52 276-327 3-62 (92)
30 cd04446 DEP_DEPDC4 DEP (Dishev 99.4 1.2E-13 2.6E-18 112.7 3.2 50 277-326 2-60 (95)
31 TIGR02196 GlrX_YruB Glutaredox 99.4 2.4E-12 5.3E-17 95.0 8.8 65 164-228 1-65 (74)
32 cd02976 NrdH NrdH-redoxin (Nrd 99.3 1.4E-11 3E-16 90.9 8.9 66 164-229 1-66 (73)
33 cd04442 DEP_1_DEP6 DEP (Dishev 99.3 8.9E-13 1.9E-17 105.0 1.9 45 282-326 8-53 (82)
34 cd04440 DEP_2_P-Rex DEP (Dishe 99.2 5.9E-12 1.3E-16 102.5 4.0 41 286-326 21-62 (93)
35 cd04449 DEP_DEPDC5-like DEP (D 99.2 4.4E-12 9.6E-17 100.8 3.1 51 276-326 1-55 (83)
36 TIGR02200 GlrX_actino Glutared 99.2 4.8E-11 1E-15 89.8 8.5 64 164-227 1-66 (77)
37 cd04448 DEP_PIKfyve DEP (Dishe 99.2 5.3E-12 1.1E-16 100.2 2.7 43 284-326 10-53 (81)
38 cd04439 DEP_1_P-Rex DEP (Dishe 99.2 8.3E-12 1.8E-16 99.1 2.6 43 284-326 10-53 (81)
39 cd04438 DEP_dishevelled DEP (D 99.2 1.9E-11 4.2E-16 97.7 3.1 49 278-326 2-55 (84)
40 cd04443 DEP_GPR155 DEP (Dishev 99.1 1.7E-11 3.8E-16 97.8 2.7 40 287-326 15-55 (83)
41 cd04441 DEP_2_DEP6 DEP (Dishev 99.1 2.5E-11 5.4E-16 97.4 3.5 43 284-326 14-57 (85)
42 cd04437 DEP_Epac DEP (Dishevel 99.1 2.9E-11 6.2E-16 103.4 2.8 43 284-326 12-56 (125)
43 cd02973 TRX_GRX_like Thioredox 99.1 2.7E-10 5.9E-15 84.6 6.9 58 164-225 2-64 (67)
44 PF04908 SH3BGR: SH3-binding, 99.1 8.3E-10 1.8E-14 90.9 9.9 81 164-244 2-97 (99)
45 cd04444 DEP_PLEK2 DEP (Disheve 99.1 1E-10 2.2E-15 97.6 3.8 51 276-326 2-56 (109)
46 PF00610 DEP: Domain found in 98.9 9.3E-10 2E-14 84.3 2.3 41 286-326 1-44 (74)
47 cd03041 GST_N_2GST_N GST_N fam 98.9 1.6E-08 3.5E-13 77.7 9.1 71 165-235 2-74 (77)
48 cd00570 GST_N_family Glutathio 98.8 1.5E-08 3.2E-13 72.7 7.2 68 166-233 2-69 (71)
49 smart00049 DEP Domain found in 98.8 2.6E-09 5.6E-14 82.4 2.2 42 285-326 3-45 (77)
50 cd03040 GST_N_mPGES2 GST_N fam 98.8 5.1E-08 1.1E-12 74.2 9.3 68 164-234 1-72 (77)
51 cd04371 DEP DEP domain, named 98.8 4.4E-09 9.5E-14 81.4 3.0 48 279-326 5-53 (81)
52 cd03037 GST_N_GRX2 GST_N famil 98.7 9.6E-08 2.1E-12 71.7 8.2 67 166-234 2-69 (71)
53 cd04450 DEP_RGS7-like DEP (Dis 98.6 1.4E-08 3.1E-13 81.4 2.3 41 286-326 12-53 (88)
54 cd03036 ArsC_like Arsenate Red 98.5 1.3E-07 2.8E-12 78.5 5.1 50 165-214 1-50 (111)
55 cd03055 GST_N_Omega GST_N fami 98.5 6.3E-07 1.4E-11 70.9 8.8 72 161-233 15-87 (89)
56 TIGR00411 redox_disulf_1 small 98.5 5.3E-07 1.1E-11 68.6 7.7 55 164-222 2-62 (82)
57 cd03059 GST_N_SspA GST_N famil 98.5 8E-07 1.7E-11 66.4 7.8 69 165-234 1-69 (73)
58 cd03060 GST_N_Omega_like GST_N 98.5 8.4E-07 1.8E-11 66.8 7.7 66 166-232 2-68 (71)
59 PF05768 DUF836: Glutaredoxin- 98.4 1.5E-06 3.2E-11 68.1 9.1 53 164-221 1-57 (81)
60 cd02977 ArsC_family Arsenate R 98.4 2.9E-07 6.4E-12 75.0 5.2 49 165-213 1-49 (105)
61 cd03051 GST_N_GTT2_like GST_N 98.4 1E-06 2.2E-11 65.4 6.9 68 166-233 2-72 (74)
62 PF13417 GST_N_3: Glutathione 98.4 1.7E-06 3.6E-11 66.1 7.7 67 167-234 1-67 (75)
63 cd03045 GST_N_Delta_Epsilon GS 98.4 1.7E-06 3.7E-11 64.9 7.5 69 165-233 1-71 (74)
64 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 1.2E-06 2.7E-11 70.1 6.6 59 163-225 14-77 (89)
65 TIGR00412 redox_disulf_2 small 98.3 2.1E-06 4.5E-11 66.4 6.8 55 164-224 2-60 (76)
66 cd03056 GST_N_4 GST_N family, 98.3 3.8E-06 8.3E-11 62.4 7.7 69 165-233 1-71 (73)
67 PHA02125 thioredoxin-like prot 98.3 3.6E-06 7.8E-11 64.6 7.3 56 165-225 2-57 (75)
68 PRK01655 spxA transcriptional 98.3 1.9E-06 4.2E-11 73.7 6.3 47 165-211 2-48 (131)
69 cd04445 DEP_PLEK1 DEP (Disheve 98.2 5.3E-07 1.2E-11 73.9 2.3 51 276-326 2-56 (99)
70 TIGR01617 arsC_related transcr 98.2 3.8E-06 8.2E-11 70.1 6.0 46 165-210 1-46 (117)
71 cd03032 ArsC_Spx Arsenate Redu 98.1 4.7E-06 1E-10 69.4 6.1 46 165-210 2-47 (115)
72 PF13192 Thioredoxin_3: Thiore 98.1 2.2E-05 4.8E-10 60.6 8.0 54 164-223 2-59 (76)
73 PRK12559 transcriptional regul 98.0 7.9E-06 1.7E-10 70.1 5.9 46 165-210 2-47 (131)
74 PRK13344 spxA transcriptional 98.0 1E-05 2.2E-10 69.6 5.9 46 165-210 2-47 (132)
75 cd03035 ArsC_Yffb Arsenate Red 98.0 9.3E-06 2E-10 67.1 5.3 46 165-210 1-46 (105)
76 cd02975 PfPDO_like_N Pyrococcu 98.0 9.2E-06 2E-10 67.3 4.8 52 164-219 24-81 (113)
77 cd03054 GST_N_Metaxin GST_N fa 98.0 3.9E-05 8.5E-10 57.7 7.7 57 171-235 14-70 (72)
78 cd03053 GST_N_Phi GST_N family 97.9 6.7E-05 1.4E-09 56.6 8.3 70 165-234 2-73 (76)
79 cd03052 GST_N_GDAP1 GST_N fami 97.9 5.5E-05 1.2E-09 57.9 7.4 69 165-233 1-71 (73)
80 cd03058 GST_N_Tau GST_N family 97.9 7.5E-05 1.6E-09 56.3 7.7 69 165-234 1-70 (74)
81 cd03033 ArsC_15kD Arsenate Red 97.8 2.9E-05 6.2E-10 65.1 5.6 47 164-210 1-47 (113)
82 KOG3029 Glutathione S-transfer 97.8 5.8E-05 1.3E-09 72.8 6.9 80 163-245 89-174 (370)
83 cd03076 GST_N_Pi GST_N family, 97.7 0.00017 3.6E-09 54.8 7.9 69 165-234 2-70 (73)
84 cd03042 GST_N_Zeta GST_N famil 97.7 0.00015 3.3E-09 53.8 7.2 68 166-233 2-71 (73)
85 cd03049 GST_N_3 GST_N family, 97.7 0.00015 3.3E-09 54.4 7.0 67 166-233 2-71 (73)
86 cd02949 TRX_NTR TRX domain, no 97.7 0.00016 3.5E-09 57.4 7.2 59 165-227 17-83 (97)
87 cd03039 GST_N_Sigma_like GST_N 97.7 0.00017 3.6E-09 54.2 6.9 69 165-233 1-69 (72)
88 TIGR01295 PedC_BrcD bacterioci 97.7 0.00013 2.9E-09 61.5 6.8 64 164-227 26-106 (122)
89 cd02950 TxlA TRX-like protein 97.7 0.0002 4.4E-09 61.7 8.0 87 164-255 23-118 (142)
90 cd03061 GST_N_CLIC GST_N famil 97.6 0.00039 8.4E-09 56.5 8.7 63 171-234 20-82 (91)
91 cd01659 TRX_superfamily Thiore 97.6 0.00019 4.1E-09 48.6 5.9 56 165-221 1-61 (69)
92 cd02953 DsbDgamma DsbD gamma f 97.6 0.0002 4.4E-09 57.2 6.8 56 164-219 14-78 (104)
93 cd03080 GST_N_Metaxin_like GST 97.6 0.00033 7.1E-09 53.3 7.6 62 165-234 2-70 (75)
94 cd02957 Phd_like Phosducin (Ph 97.6 0.00041 8.9E-09 56.9 8.4 64 165-233 28-98 (113)
95 TIGR02187 GlrX_arch Glutaredox 97.5 0.00018 3.8E-09 65.8 6.5 55 164-222 136-195 (215)
96 cd03048 GST_N_Ure2p_like GST_N 97.5 0.00045 9.7E-09 53.0 7.7 68 165-233 2-74 (81)
97 PRK10026 arsenate reductase; P 97.5 0.00017 3.8E-09 63.0 6.0 48 163-210 2-49 (141)
98 TIGR02182 GRXB Glutaredoxin, G 97.5 0.00029 6.3E-09 63.8 7.5 68 166-235 1-69 (209)
99 PRK10387 glutaredoxin 2; Provi 97.5 0.00035 7.5E-09 62.2 7.9 68 165-234 1-69 (210)
100 COG1393 ArsC Arsenate reductas 97.5 0.00018 3.9E-09 60.9 5.6 46 164-209 2-47 (117)
101 cd02947 TRX_family TRX family; 97.5 0.00064 1.4E-08 50.7 7.9 59 163-225 12-77 (93)
102 PRK09381 trxA thioredoxin; Pro 97.5 0.00054 1.2E-08 55.1 7.6 60 164-227 24-91 (109)
103 PHA02278 thioredoxin-like prot 97.4 0.00062 1.3E-08 56.0 7.8 62 164-225 17-86 (103)
104 KOG3571 Dishevelled 3 and rela 97.4 7.7E-05 1.7E-09 76.4 2.9 52 274-325 391-447 (626)
105 TIGR00014 arsC arsenate reduct 97.4 0.00023 5.1E-09 59.4 5.1 46 165-210 1-46 (114)
106 PF00085 Thioredoxin: Thioredo 97.4 0.0006 1.3E-08 53.1 7.0 58 164-225 20-85 (103)
107 cd02954 DIM1 Dim1 family; Dim1 97.4 0.00078 1.7E-08 56.9 8.1 57 165-225 18-82 (114)
108 PRK15317 alkyl hydroperoxide r 97.4 0.00021 4.5E-09 73.3 5.4 60 162-225 117-181 (517)
109 cd03034 ArsC_ArsC Arsenate Red 97.4 0.00029 6.4E-09 58.5 5.3 45 165-209 1-45 (112)
110 cd03038 GST_N_etherase_LigE GS 97.4 0.00036 7.8E-09 54.1 5.4 63 171-234 14-79 (84)
111 TIGR03140 AhpF alkyl hydropero 97.4 0.00022 4.7E-09 73.2 5.4 60 162-225 118-182 (515)
112 PRK10853 putative reductase; P 97.4 0.00015 3.2E-09 61.3 3.3 45 165-209 2-46 (118)
113 cd03050 GST_N_Theta GST_N fami 97.3 0.0013 2.9E-08 49.7 7.8 69 165-233 1-71 (76)
114 TIGR01616 nitro_assoc nitrogen 97.3 0.00044 9.6E-09 59.2 5.7 47 164-210 2-48 (126)
115 cd03044 GST_N_EF1Bgamma GST_N 97.3 0.001 2.2E-08 50.5 7.1 68 166-233 2-71 (75)
116 cd02989 Phd_like_TxnDC9 Phosdu 97.3 0.00076 1.6E-08 55.9 6.9 62 165-230 26-94 (113)
117 TIGR02187 GlrX_arch Glutaredox 97.3 0.0015 3.3E-08 59.6 9.3 60 164-225 22-91 (215)
118 PF13409 GST_N_2: Glutathione 97.2 0.00069 1.5E-08 51.2 5.4 64 172-235 1-68 (70)
119 TIGR03143 AhpF_homolog putativ 97.2 0.00044 9.6E-09 71.7 5.6 57 163-223 478-539 (555)
120 TIGR01068 thioredoxin thioredo 97.2 0.0012 2.7E-08 51.0 6.8 58 164-225 17-82 (101)
121 cd02985 TRX_CDSP32 TRX family, 97.2 0.0027 5.8E-08 51.3 8.6 60 165-225 19-85 (103)
122 KOG4023 Uncharacterized conser 97.1 0.00099 2.2E-08 55.2 5.7 84 163-246 2-99 (108)
123 cd03047 GST_N_2 GST_N family, 97.1 0.0025 5.3E-08 48.0 7.5 67 166-232 2-70 (73)
124 PRK09481 sspA stringent starva 97.1 0.0017 3.7E-08 58.5 7.8 68 164-232 10-77 (211)
125 PTZ00051 thioredoxin; Provisio 97.1 0.0027 5.8E-08 49.8 7.7 60 164-227 21-87 (98)
126 KOG0910 Thioredoxin-like prote 97.1 0.00093 2E-08 59.1 5.3 56 165-224 65-128 (150)
127 cd03057 GST_N_Beta GST_N famil 97.1 0.0024 5.3E-08 48.3 6.9 67 166-233 2-71 (77)
128 PRK10996 thioredoxin 2; Provis 97.0 0.003 6.5E-08 54.1 7.8 59 163-225 54-120 (139)
129 cd03046 GST_N_GTT1_like GST_N 96.9 0.004 8.6E-08 46.6 6.9 68 166-234 2-71 (76)
130 PF13098 Thioredoxin_2: Thiore 96.9 0.0039 8.4E-08 50.0 6.9 67 162-228 6-103 (112)
131 cd02951 SoxW SoxW family; SoxW 96.8 0.003 6.5E-08 52.2 6.0 58 163-220 16-92 (125)
132 cd03003 PDI_a_ERdj5_N PDIa fam 96.8 0.0043 9.2E-08 49.3 6.6 55 164-222 21-83 (101)
133 cd02965 HyaE HyaE family; HyaE 96.8 0.0035 7.6E-08 52.8 6.3 63 163-229 29-101 (111)
134 cd02948 TRX_NDPK TRX domain, T 96.8 0.0061 1.3E-07 49.0 7.4 55 165-224 21-84 (102)
135 cd02994 PDI_a_TMX PDIa family, 96.8 0.005 1.1E-07 48.7 6.8 52 164-219 19-77 (101)
136 COG4545 Glutaredoxin-related p 96.8 0.0043 9.2E-08 49.3 6.0 67 165-232 4-83 (85)
137 cd02987 Phd_like_Phd Phosducin 96.7 0.0073 1.6E-07 54.1 8.4 61 165-230 87-154 (175)
138 TIGR00862 O-ClC intracellular 96.7 0.0071 1.5E-07 56.8 8.4 63 171-234 17-79 (236)
139 cd02963 TRX_DnaJ TRX domain, D 96.7 0.0075 1.6E-07 49.4 7.6 58 164-225 27-93 (111)
140 cd03004 PDI_a_ERdj5_C PDIa fam 96.7 0.0058 1.3E-07 48.6 6.7 54 164-221 22-83 (104)
141 cd02984 TRX_PICOT TRX domain, 96.7 0.009 1.9E-07 46.5 7.7 56 165-224 18-81 (97)
142 cd02996 PDI_a_ERp44 PDIa famil 96.7 0.0065 1.4E-07 48.9 6.8 54 165-222 22-89 (108)
143 cd03043 GST_N_1 GST_N family, 96.7 0.01 2.2E-07 45.0 7.5 64 170-233 7-71 (73)
144 cd02962 TMX2 TMX2 family; comp 96.6 0.0062 1.4E-07 53.6 7.1 64 165-228 51-125 (152)
145 PF03960 ArsC: ArsC family; I 96.6 0.0041 8.9E-08 51.2 5.6 41 168-208 1-41 (110)
146 COG3118 Thioredoxin domain-con 96.6 0.0044 9.6E-08 60.3 6.5 62 165-230 47-116 (304)
147 cd02956 ybbN ybbN protein fami 96.6 0.007 1.5E-07 47.3 6.6 56 165-224 16-79 (96)
148 cd02999 PDI_a_ERp44_like PDIa 96.6 0.0073 1.6E-07 48.8 6.6 51 164-218 21-77 (100)
149 cd02961 PDI_a_family Protein D 96.5 0.0096 2.1E-07 45.3 6.8 53 163-219 17-77 (101)
150 PRK15113 glutathione S-transfe 96.5 0.011 2.3E-07 53.4 8.2 69 164-232 5-77 (214)
151 cd03001 PDI_a_P5 PDIa family, 96.4 0.013 2.9E-07 45.8 6.7 52 164-219 21-78 (103)
152 cd03002 PDI_a_MPD1_like PDI fa 96.3 0.0091 2E-07 47.5 5.7 54 164-219 21-80 (109)
153 TIGR01126 pdi_dom protein disu 96.3 0.01 2.3E-07 46.1 5.9 53 163-219 15-75 (102)
154 PLN02473 glutathione S-transfe 96.3 0.016 3.4E-07 51.9 7.7 69 165-233 3-73 (214)
155 KOG3572 Uncharacterized conser 96.3 0.002 4.3E-08 72.0 2.1 53 273-326 1273-1327(1701)
156 cd02993 PDI_a_APS_reductase PD 96.3 0.013 2.8E-07 47.6 6.4 54 163-218 23-83 (109)
157 cd03006 PDI_a_EFP1_N PDIa fami 96.3 0.012 2.7E-07 49.1 6.4 56 164-222 32-95 (113)
158 KOG0907 Thioredoxin [Posttrans 96.3 0.017 3.6E-07 48.1 7.0 60 165-228 25-95 (106)
159 cd03005 PDI_a_ERp46 PDIa famil 96.2 0.013 2.8E-07 45.9 6.0 57 164-224 19-86 (102)
160 PTZ00443 Thioredoxin domain-co 96.2 0.024 5.3E-07 53.0 8.5 57 164-224 55-119 (224)
161 cd03065 PDI_b_Calsequestrin_N 96.1 0.014 3.1E-07 49.5 6.2 76 163-246 28-118 (120)
162 cd02959 ERp19 Endoplasmic reti 96.1 0.013 2.7E-07 49.0 5.7 58 165-225 23-91 (117)
163 cd04436 DEP_fRgd2 DEP (Disheve 96.1 0.0063 1.4E-07 49.0 3.6 48 276-323 2-51 (84)
164 TIGR02740 TraF-like TraF-like 96.1 0.0069 1.5E-07 58.0 4.4 57 163-219 168-235 (271)
165 cd03000 PDI_a_TMX3 PDIa family 96.0 0.017 3.6E-07 46.3 5.9 51 165-219 19-78 (104)
166 cd02997 PDI_a_PDIR PDIa family 96.0 0.013 2.7E-07 46.0 5.1 60 163-224 19-88 (104)
167 cd02998 PDI_a_ERp38 PDIa famil 96.0 0.018 4E-07 44.9 6.0 53 163-219 20-81 (105)
168 cd02952 TRP14_like Human TRX-r 96.0 0.014 3E-07 49.6 5.4 55 165-219 25-96 (119)
169 PLN02378 glutathione S-transfe 96.0 0.02 4.3E-07 51.9 6.7 62 171-233 18-79 (213)
170 cd02988 Phd_like_VIAF Phosduci 96.0 0.022 4.8E-07 51.9 6.9 58 165-229 106-170 (192)
171 TIGR01262 maiA maleylacetoacet 95.9 0.016 3.4E-07 51.5 5.7 68 167-234 2-72 (210)
172 cd02986 DLP Dim1 family, Dim1- 95.9 0.032 6.9E-07 47.3 7.1 55 166-224 19-81 (114)
173 PRK13728 conjugal transfer pro 95.9 0.029 6.3E-07 51.1 7.2 58 165-222 73-148 (181)
174 KOG0406 Glutathione S-transfer 95.8 0.039 8.4E-07 52.1 7.8 71 163-234 8-79 (231)
175 cd02955 SSP411 TRX domain, SSP 95.7 0.024 5.1E-07 48.3 5.8 65 164-228 17-98 (124)
176 PF14595 Thioredoxin_9: Thiore 95.7 0.0057 1.2E-07 52.4 2.0 62 163-225 43-112 (129)
177 PRK10877 protein disulfide iso 95.6 0.051 1.1E-06 50.8 8.1 70 162-231 108-221 (232)
178 PLN02817 glutathione dehydroge 95.6 0.036 7.7E-07 52.8 6.9 63 170-233 70-132 (265)
179 cd02995 PDI_a_PDI_a'_C PDIa fa 95.5 0.035 7.7E-07 43.3 5.7 52 163-219 20-79 (104)
180 PLN00410 U5 snRNP protein, DIM 95.4 0.036 7.9E-07 48.6 5.9 54 165-222 27-89 (142)
181 cd02992 PDI_a_QSOX PDIa family 95.4 0.04 8.8E-07 45.5 5.8 54 164-219 22-84 (114)
182 PF13728 TraF: F plasmid trans 95.2 0.022 4.8E-07 52.8 4.1 58 162-219 121-189 (215)
183 cd03077 GST_N_Alpha GST_N fami 95.2 0.095 2.1E-06 40.4 7.1 68 165-233 2-71 (79)
184 PLN02395 glutathione S-transfe 95.1 0.097 2.1E-06 46.7 7.8 70 164-234 2-73 (215)
185 cd03009 TryX_like_TryX_NRX Try 95.0 0.11 2.4E-06 43.0 7.4 60 165-224 22-113 (131)
186 COG0625 Gst Glutathione S-tran 94.9 0.072 1.6E-06 47.7 6.6 66 166-231 2-69 (211)
187 cd02972 DsbA_family DsbA famil 94.8 0.11 2.3E-06 39.2 6.4 57 165-221 1-91 (98)
188 PTZ00062 glutaredoxin; Provisi 94.7 0.15 3.3E-06 47.1 8.1 56 163-228 18-79 (204)
189 cd02964 TryX_like_family Trypa 94.7 0.14 3.1E-06 42.7 7.4 60 165-224 21-113 (132)
190 PF06764 DUF1223: Protein of u 94.5 0.2 4.3E-06 46.4 8.3 64 165-228 2-86 (202)
191 cd03008 TryX_like_RdCVF Trypar 94.4 0.29 6.2E-06 43.0 8.9 20 166-185 30-49 (146)
192 PRK10357 putative glutathione 94.4 0.12 2.5E-06 45.9 6.5 64 166-230 2-66 (202)
193 COG3019 Predicted metal-bindin 94.1 0.18 3.9E-06 44.4 6.9 70 163-236 26-102 (149)
194 TIGR02738 TrbB type-F conjugat 94.1 0.19 4.1E-06 44.2 7.1 57 163-219 52-124 (153)
195 cd03020 DsbA_DsbC_DsbG DsbA fa 94.0 0.23 4.9E-06 44.6 7.6 33 161-193 77-111 (197)
196 cd04435 DEP_fRom2 DEP (Disheve 94.0 0.066 1.4E-06 42.9 3.6 50 276-325 2-52 (82)
197 PRK13972 GSH-dependent disulfi 94.0 0.24 5.2E-06 44.5 7.8 67 165-232 2-77 (215)
198 PTZ00102 disulphide isomerase; 94.0 0.23 4.9E-06 49.8 8.3 53 163-219 377-437 (477)
199 PF02798 GST_N: Glutathione S- 93.9 0.32 7E-06 37.1 7.2 67 165-233 3-73 (76)
200 cd02982 PDI_b'_family Protein 93.9 0.14 3.1E-06 40.2 5.4 52 164-219 15-74 (103)
201 KOG1422 Intracellular Cl- chan 93.7 0.37 8E-06 45.1 8.5 59 171-232 19-79 (221)
202 cd03078 GST_N_Metaxin1_like GS 93.6 0.26 5.7E-06 37.8 6.2 57 171-235 14-70 (73)
203 TIGR00424 APS_reduc 5'-adenyly 93.4 0.22 4.7E-06 51.5 7.2 56 164-221 374-438 (463)
204 PF13899 Thioredoxin_7: Thiore 93.3 0.18 3.9E-06 38.9 5.0 51 164-219 20-79 (82)
205 cd03079 GST_N_Metaxin2 GST_N f 93.3 0.2 4.4E-06 39.1 5.2 57 171-234 15-71 (74)
206 PRK11752 putative S-transferas 93.0 0.55 1.2E-05 44.3 8.8 71 161-232 41-123 (264)
207 PRK00293 dipZ thiol:disulfide 92.8 0.3 6.6E-06 51.4 7.4 55 165-219 478-540 (571)
208 cd03023 DsbA_Com1_like DsbA fa 92.8 0.61 1.3E-05 38.6 7.8 24 162-185 6-29 (154)
209 PLN02309 5'-adenylylsulfate re 92.7 0.26 5.6E-06 50.8 6.5 54 163-219 367-428 (457)
210 cd03011 TlpA_like_ScsD_MtbDsbE 92.6 0.13 2.9E-06 41.6 3.4 24 163-186 22-45 (123)
211 cd02967 mauD Methylamine utili 92.5 0.53 1.1E-05 37.6 6.8 55 164-218 24-83 (114)
212 cd03010 TlpA_like_DsbE TlpA-li 92.4 0.77 1.7E-05 37.6 7.8 33 164-196 28-64 (127)
213 TIGR02661 MauD methylamine deh 92.3 0.68 1.5E-05 41.5 8.0 33 164-196 77-113 (189)
214 COG2999 GrxB Glutaredoxin 2 [P 92.2 0.15 3.2E-06 46.9 3.5 67 166-234 2-69 (215)
215 PTZ00057 glutathione s-transfe 92.2 0.69 1.5E-05 41.4 7.9 70 163-232 3-77 (205)
216 COG5494 Predicted thioredoxin/ 92.1 0.43 9.4E-06 44.9 6.5 69 162-234 10-84 (265)
217 TIGR01130 ER_PDI_fam protein d 92.1 0.4 8.7E-06 47.3 6.8 56 164-223 21-87 (462)
218 cd02966 TlpA_like_family TlpA- 92.1 0.74 1.6E-05 35.3 7.0 35 164-198 22-63 (116)
219 PTZ00102 disulphide isomerase; 91.9 0.41 8.9E-06 48.0 6.7 56 163-222 51-117 (477)
220 PF13905 Thioredoxin_8: Thiore 91.8 0.98 2.1E-05 34.9 7.5 22 165-186 5-26 (95)
221 PRK03147 thiol-disulfide oxido 91.4 0.69 1.5E-05 39.7 6.8 35 164-198 64-105 (173)
222 PF06953 ArsD: Arsenical resis 90.9 1.6 3.4E-05 37.5 8.4 54 177-231 30-92 (123)
223 PRK15412 thiol:disulfide inter 90.8 0.99 2.2E-05 40.2 7.4 37 164-200 71-110 (185)
224 TIGR00385 dsbE periplasmic pro 90.7 1.2 2.7E-05 39.0 7.8 34 164-197 66-102 (173)
225 COG2143 Thioredoxin-related pr 90.6 0.84 1.8E-05 41.3 6.5 63 163-225 44-130 (182)
226 cd03075 GST_N_Mu GST_N family, 90.5 1.7 3.6E-05 33.7 7.5 67 167-233 3-77 (82)
227 KOG4244 Failed axon connection 90.3 0.63 1.4E-05 45.0 5.9 62 162-231 43-111 (281)
228 PRK10542 glutathionine S-trans 89.6 0.89 1.9E-05 40.0 6.0 67 166-233 2-72 (201)
229 PF08534 Redoxin: Redoxin; In 89.5 1.8 3.9E-05 36.2 7.6 44 164-207 31-82 (146)
230 cd03007 PDI_a_ERp29_N PDIa fam 89.3 2.1 4.6E-05 36.2 7.8 59 163-221 20-90 (116)
231 COG0526 TrxA Thiol-disulfide i 89.1 1.2 2.7E-05 33.1 5.7 53 168-222 39-100 (127)
232 TIGR02739 TraF type-F conjugat 89.1 0.96 2.1E-05 43.3 6.2 58 162-219 151-219 (256)
233 KOG0868 Glutathione S-transfer 88.6 0.75 1.6E-05 42.4 4.8 68 164-231 5-75 (217)
234 TIGR01130 ER_PDI_fam protein d 88.3 1.8 3.8E-05 42.8 7.7 51 163-219 366-425 (462)
235 PRK14018 trifunctional thiored 87.2 2.3 5E-05 44.7 8.1 22 165-186 60-81 (521)
236 cd02958 UAS UAS family; UAS is 87.0 1 2.3E-05 36.6 4.4 58 165-224 20-91 (114)
237 KOG1695 Glutathione S-transfer 86.7 2.3 5.1E-05 39.5 7.0 70 163-233 2-71 (206)
238 COG5429 Uncharacterized secret 86.7 0.94 2E-05 43.2 4.4 67 161-227 41-128 (261)
239 KOG0867 Glutathione S-transfer 86.6 2.4 5.2E-05 39.2 7.1 69 164-232 2-72 (226)
240 cd03012 TlpA_like_DipZ_like Tl 85.8 2.4 5.1E-05 34.9 6.0 23 164-186 26-48 (126)
241 PRK13703 conjugal pilus assemb 84.9 2.3 5E-05 40.6 6.2 58 162-219 144-212 (248)
242 KOG0908 Thioredoxin-like prote 84.5 2.1 4.5E-05 41.4 5.6 58 164-225 24-88 (288)
243 PHA03075 glutaredoxin-like pro 84.0 1.3 2.8E-05 38.0 3.6 32 162-193 2-33 (123)
244 PLN02399 phospholipid hydroper 84.0 8.5 0.00018 36.4 9.5 34 163-196 101-141 (236)
245 cd02970 PRX_like2 Peroxiredoxi 82.5 5.4 0.00012 32.9 6.9 53 164-218 26-86 (149)
246 KOG0190 Protein disulfide isom 82.4 2.6 5.6E-05 44.1 5.8 55 165-223 46-111 (493)
247 PF06110 DUF953: Eukaryotic pr 82.3 1.4 3.1E-05 37.5 3.3 49 171-219 36-95 (119)
248 PF00578 AhpC-TSA: AhpC/TSA fa 80.2 6.9 0.00015 31.3 6.5 54 164-219 28-89 (124)
249 PRK11509 hydrogenase-1 operon 79.6 5.1 0.00011 34.8 5.8 79 165-250 37-127 (132)
250 smart00594 UAS UAS domain. 79.3 4.4 9.6E-05 33.7 5.2 55 163-219 29-92 (122)
251 PF10568 Tom37: Outer mitochon 79.2 9.2 0.0002 29.6 6.6 54 173-234 14-71 (72)
252 KOG0912 Thiol-disulfide isomer 79.0 22 0.00047 35.6 10.5 58 165-224 17-85 (375)
253 KOG4277 Uncharacterized conser 77.5 1.6 3.5E-05 43.3 2.3 60 165-224 47-112 (468)
254 TIGR02540 gpx7 putative glutat 77.3 9.3 0.0002 32.6 6.8 31 165-195 26-63 (153)
255 PTZ00056 glutathione peroxidas 76.5 7.4 0.00016 35.4 6.3 31 165-195 43-80 (199)
256 PF07315 DUF1462: Protein of u 76.4 25 0.00054 29.0 8.5 68 166-233 1-88 (93)
257 PTZ00256 glutathione peroxidas 76.3 12 0.00027 33.1 7.5 51 166-217 46-111 (183)
258 PF11009 DUF2847: Protein of u 76.2 16 0.00034 30.6 7.6 64 162-225 19-92 (105)
259 cd03017 PRX_BCP Peroxiredoxin 75.2 11 0.00024 30.9 6.5 50 166-217 28-85 (140)
260 PLN02919 haloacid dehalogenase 74.8 14 0.0003 42.0 9.1 22 165-186 424-445 (1057)
261 PF03190 Thioredox_DsbH: Prote 74.8 15 0.00033 33.0 7.6 63 164-226 39-118 (163)
262 COG3634 AhpF Alkyl hydroperoxi 74.7 8.5 0.00018 39.3 6.5 60 164-225 119-181 (520)
263 PLN02412 probable glutathione 72.6 11 0.00025 32.9 6.3 53 165-218 33-100 (167)
264 PF13462 Thioredoxin_4: Thiore 72.3 5.7 0.00012 33.3 4.2 25 209-233 132-156 (162)
265 COG4232 Thiol:disulfide interc 71.9 6.9 0.00015 41.6 5.4 55 164-219 476-540 (569)
266 PRK11657 dsbG disulfide isomer 71.6 3.7 7.9E-05 38.8 3.1 25 161-185 117-141 (251)
267 KOG2501 Thioredoxin, nucleored 71.4 13 0.00028 33.3 6.3 40 161-200 31-79 (157)
268 cd03018 PRX_AhpE_like Peroxire 69.1 14 0.00031 30.7 5.9 50 165-216 32-89 (149)
269 cd00340 GSH_Peroxidase Glutath 68.8 12 0.00026 31.9 5.5 20 165-185 26-45 (152)
270 KOG0191 Thioredoxin/protein di 68.7 13 0.00028 36.9 6.4 57 161-219 47-107 (383)
271 cd02971 PRX_family Peroxiredox 68.1 18 0.0004 29.5 6.3 52 165-217 26-85 (140)
272 PF04134 DUF393: Protein of un 67.4 21 0.00046 28.8 6.4 78 167-246 1-87 (114)
273 KOG3425 Uncharacterized conser 67.0 9.2 0.0002 33.1 4.2 29 171-199 43-77 (128)
274 PF02114 Phosducin: Phosducin; 66.6 10 0.00022 36.4 5.1 79 165-248 150-239 (265)
275 KOG0190 Protein disulfide isom 66.5 6 0.00013 41.4 3.6 29 162-190 385-413 (493)
276 PRK09437 bcp thioredoxin-depen 65.4 18 0.00039 30.5 5.9 51 165-217 33-92 (154)
277 cd03015 PRX_Typ2cys Peroxiredo 64.4 20 0.00043 31.3 6.0 32 165-196 32-72 (173)
278 cd03014 PRX_Atyp2cys Peroxired 64.4 24 0.00052 29.3 6.3 51 165-216 29-86 (143)
279 cd02969 PRX_like1 Peroxiredoxi 63.6 28 0.00061 30.0 6.9 33 164-196 28-67 (171)
280 TIGR03143 AhpF_homolog putativ 62.3 18 0.0004 37.8 6.3 57 159-219 362-425 (555)
281 cd02960 AGR Anterior Gradient 62.1 7.2 0.00016 33.8 2.8 18 165-182 27-44 (130)
282 cd02968 SCO SCO (an acronym fo 60.7 31 0.00066 28.3 6.3 22 164-185 25-47 (142)
283 cd03022 DsbA_HCCA_Iso DsbA fam 60.0 12 0.00027 32.4 3.9 56 178-233 125-187 (192)
284 KOG4420 Uncharacterized conser 57.2 6.4 0.00014 38.4 1.8 72 165-236 27-100 (325)
285 PF13462 Thioredoxin_4: Thiore 56.7 11 0.00025 31.5 3.1 39 162-200 13-59 (162)
286 cd03019 DsbA_DsbA DsbA family, 54.7 11 0.00024 32.1 2.7 36 161-196 15-56 (178)
287 TIGR01626 ytfJ_HI0045 conserve 53.2 31 0.00068 31.5 5.5 36 164-199 62-106 (184)
288 COG3340 PepE Peptidase E [Amin 48.9 79 0.0017 30.0 7.5 72 171-249 46-117 (224)
289 COG4837 Uncharacterized protei 48.3 1.2E+02 0.0026 25.4 7.6 70 164-233 6-95 (106)
290 PRK10954 periplasmic protein d 48.3 21 0.00045 32.4 3.5 52 177-228 124-182 (207)
291 KOG0191 Thioredoxin/protein di 45.5 38 0.00082 33.6 5.2 54 163-218 164-223 (383)
292 PF14096 DUF4274: Domain of un 44.7 13 0.00028 28.8 1.4 22 305-326 19-40 (77)
293 TIGR01162 purE phosphoribosyla 44.7 80 0.0017 28.3 6.6 34 165-198 3-36 (156)
294 TIGR03137 AhpC peroxiredoxin. 44.5 68 0.0015 28.5 6.2 33 165-197 34-75 (187)
295 PF03575 Peptidase_S51: Peptid 43.9 85 0.0018 27.0 6.6 66 175-247 1-66 (154)
296 TIGR03439 methyl_EasF probable 43.0 56 0.0012 32.3 5.9 61 170-233 82-147 (319)
297 COG0041 PurE Phosphoribosylcar 42.8 88 0.0019 28.3 6.4 70 165-234 7-103 (162)
298 cd03019 DsbA_DsbA DsbA family, 42.7 21 0.00045 30.4 2.6 52 177-228 100-158 (178)
299 PF15643 Tox-PL-2: Papain fold 42.6 42 0.00091 28.1 4.1 51 172-225 20-73 (100)
300 cd05295 MDH_like Malate dehydr 41.2 62 0.0013 33.7 6.1 66 170-235 1-82 (452)
301 KOG0913 Thiol-disulfide isomer 41.2 8.4 0.00018 36.9 -0.2 54 165-222 43-105 (248)
302 COG5422 ROM1 RhoGEF, Guanine n 41.2 11 0.00024 42.2 0.7 51 273-323 275-326 (1175)
303 cd03016 PRX_1cys Peroxiredoxin 37.7 85 0.0018 28.4 5.8 33 165-197 28-69 (203)
304 PF09413 DUF2007: Domain of un 37.4 33 0.00071 25.3 2.6 53 165-222 1-53 (67)
305 cd04816 PA_SaNapH_like PA_SaNa 36.9 68 0.0015 26.5 4.7 61 161-222 42-103 (122)
306 cd02974 AhpF_NTD_N Alkyl hydro 36.3 95 0.002 25.1 5.3 36 159-195 15-57 (94)
307 PRK00522 tpx lipid hydroperoxi 35.6 1.3E+02 0.0028 26.1 6.5 46 165-211 48-99 (167)
308 PF01323 DSBA: DSBA-like thior 34.4 41 0.0009 29.0 3.1 37 164-200 1-42 (193)
309 TIGR03759 conj_TIGR03759 integ 34.3 89 0.0019 29.2 5.4 61 161-224 108-170 (200)
310 cd03024 DsbA_FrnE DsbA family, 34.0 87 0.0019 27.3 5.2 55 178-232 133-195 (201)
311 TIGR00385 dsbE periplasmic pro 33.5 1.1E+02 0.0024 26.6 5.7 56 165-224 93-151 (173)
312 PF10865 DUF2703: Domain of un 32.9 76 0.0016 27.2 4.4 46 172-224 14-72 (120)
313 PRK10606 btuE putative glutath 32.1 1E+02 0.0022 27.9 5.3 16 164-179 28-43 (183)
314 PF01323 DSBA: DSBA-like thior 31.4 60 0.0013 27.9 3.7 55 179-233 126-188 (193)
315 PF11287 DUF3088: Protein of u 31.4 91 0.002 26.6 4.5 48 172-222 23-77 (112)
316 PRK10382 alkyl hydroperoxide r 29.4 1.4E+02 0.003 27.0 5.7 34 164-197 33-75 (187)
317 cd03146 GAT1_Peptidase_E Type 28.3 2.7E+02 0.0059 25.3 7.6 65 174-247 46-111 (212)
318 cd02127 PA_hPAP21_like PA_hPAP 28.0 1.1E+02 0.0024 25.7 4.5 72 161-237 33-109 (118)
319 PF09822 ABC_transp_aux: ABC-t 27.8 1.7E+02 0.0037 27.3 6.3 52 164-215 28-90 (271)
320 TIGR03317 ygfZ_signature folat 27.2 57 0.0012 24.4 2.4 17 300-316 40-56 (67)
321 PRK13599 putative peroxiredoxi 27.0 1.4E+02 0.003 27.6 5.4 33 165-197 31-72 (215)
322 COG1651 DsbG Protein-disulfide 26.0 72 0.0016 29.1 3.4 26 208-233 210-235 (244)
323 PRK13190 putative peroxiredoxi 25.9 1.5E+02 0.0032 26.9 5.3 33 165-197 30-71 (202)
324 cd03145 GAT1_cyanophycinase Ty 24.1 5.5E+02 0.012 23.4 9.5 76 163-247 30-114 (217)
325 PRK10954 periplasmic protein d 24.0 75 0.0016 28.7 3.0 33 163-195 39-80 (207)
326 PRK13189 peroxiredoxin; Provis 23.6 1.8E+02 0.004 26.8 5.6 34 165-198 38-80 (222)
327 cd03013 PRX5_like Peroxiredoxi 23.5 2.4E+02 0.0051 24.3 6.0 48 163-211 30-88 (155)
328 PF04566 RNA_pol_Rpb2_4: RNA p 23.0 57 0.0012 24.7 1.7 17 217-233 1-17 (63)
329 KOG3171 Conserved phosducin-li 22.8 1.3E+02 0.0028 28.8 4.4 77 167-247 165-251 (273)
330 PTZ00253 tryparedoxin peroxida 22.8 2E+02 0.0043 25.8 5.5 35 165-199 39-82 (199)
331 cd03010 TlpA_like_DsbE TlpA-li 22.8 2.4E+02 0.0051 22.7 5.5 56 165-224 56-114 (127)
332 PRK15000 peroxidase; Provision 21.8 2.4E+02 0.0052 25.5 5.9 34 164-197 36-78 (200)
333 PF00282 Pyridoxal_deC: Pyrido 21.3 2.1E+02 0.0046 28.5 5.9 70 162-233 139-216 (373)
334 PRK15317 alkyl hydroperoxide r 21.3 1.8E+02 0.004 29.9 5.6 28 159-186 15-43 (517)
335 cd02130 PA_ScAPY_like PA_ScAPY 20.4 2.3E+02 0.0049 23.3 5.0 72 161-237 43-115 (122)
No 1
>PRK10824 glutaredoxin-4; Provisional
Probab=99.90 E-value=1.3e-23 Score=176.66 Aligned_cols=89 Identities=16% Similarity=0.322 Sum_probs=84.9
Q ss_pred cCCcEEEEEcC-----CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 161 IKGRISFFSRS-----NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 161 ~~~kVvLYsk~-----~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
..++|+||+|. +||||++|+++|+++|++|..+||+.+++.+++|.+++|++|||||||||+||||+|++.+|++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 35899999994 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHhhcc
Q 039225 236 SGTFDERFREMLGR 249 (327)
Q Consensus 236 sGeL~~~Lk~~~~~ 249 (327)
+|+|+++|++++..
T Consensus 93 ~G~L~~lL~~~~~~ 106 (115)
T PRK10824 93 RGELQQLIKETAAK 106 (115)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998763
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.90 E-value=1.1e-23 Score=171.57 Aligned_cols=88 Identities=31% Similarity=0.462 Sum_probs=81.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh---HHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG 237 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e---~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG 237 (327)
..++|+||++++||||.++|++|+++|++|+++||+.+++ .++++.+++|+.|||+|||||++|||++++++|+++|
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G 85 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISG 85 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcC
Confidence 3578999999999999999999999999999999998764 5667888899999999999999999999999999999
Q ss_pred chHHHHHHhhc
Q 039225 238 TFDERFREMLG 248 (327)
Q Consensus 238 eL~~~Lk~~~~ 248 (327)
+|+++|+++++
T Consensus 86 ~L~~~l~~~~~ 96 (99)
T TIGR02189 86 SLVPMLKQAGA 96 (99)
T ss_pred CHHHHHHHhCc
Confidence 99999998764
No 3
>PHA03050 glutaredoxin; Provisional
Probab=99.89 E-value=5.7e-23 Score=170.45 Aligned_cols=87 Identities=14% Similarity=0.319 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCC---ceEEEEcCC---ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGL---KFVEINVDV---FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV---~y~eiDVd~---d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
.++|+||+++|||||.+|+++|+++++ +|+++||+. +.+.+++|.+++|+.|||+|||||++|||++++++|++
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDN 91 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHH
Confidence 578999999999999999999999999 799999997 56789999999999999999999999999999999999
Q ss_pred cCchHHHHHHhhc
Q 039225 236 SGTFDERFREMLG 248 (327)
Q Consensus 236 sGeL~~~Lk~~~~ 248 (327)
+|+|.++|++++.
T Consensus 92 ~g~L~~~l~~~~~ 104 (108)
T PHA03050 92 MDALGDILSSIGV 104 (108)
T ss_pred cCCHHHHHHHccc
Confidence 9999999999875
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.88 E-value=2.1e-22 Score=163.62 Aligned_cols=83 Identities=16% Similarity=0.339 Sum_probs=79.4
Q ss_pred cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
..++|+||++ ++||||.+|+++|+++|++|+++||+.+++.+++|.+++|+.+||+|||||++|||++++.+|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 4589999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHH
Q 039225 236 SGTFDERF 243 (327)
Q Consensus 236 sGeL~~~L 243 (327)
+|+|.++|
T Consensus 90 ~g~L~~~l 97 (97)
T TIGR00365 90 SGELQTLL 97 (97)
T ss_pred CcChHHhC
Confidence 99998875
No 5
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.87 E-value=3.8e-22 Score=174.13 Aligned_cols=107 Identities=24% Similarity=0.441 Sum_probs=94.6
Q ss_pred cEEEEEcC------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHHHHh
Q 039225 164 RISFFSRS------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 164 kVvLYsk~------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL~~L 233 (327)
+|+||+++ +||+|.+||++|++++|+|+++||+++++++++|++++|. .+||||||||++|||++++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 58999999 9999999999999999999999999999999999999876 8999999999999999999999
Q ss_pred hhcCchHHHHHHhhcc----CC--CCCCCCCCCCCCCCCccchhhh
Q 039225 234 RNSGTFDERFREMLGR----KC--SGDAPAPPLYGFDDDDEEEESM 273 (327)
Q Consensus 234 ~esGeL~~~Lk~~~~~----~~--~~~ap~~P~~g~~~~~~~~~e~ 273 (327)
+++|+|+++|+.+... .| +++.+++|+..++ ++....
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~---Gs~k~~ 123 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECN---GSCKVF 123 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCC---CcceEE
Confidence 9999999999986322 22 3678888988887 555543
No 6
>PRK10638 glutaredoxin 3; Provisional
Probab=99.86 E-value=1.7e-21 Score=152.47 Aligned_cols=83 Identities=25% Similarity=0.614 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHH
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDE 241 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~ 241 (327)
|.+|+||++++||||.+|+.+|+++|++|+++||+.+++.++++.+++|..++|+||+||++|||++++++++++|+|.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~ 80 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDP 80 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHH
Confidence 34799999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHH
Q 039225 242 RFR 244 (327)
Q Consensus 242 ~Lk 244 (327)
+|+
T Consensus 81 ~~~ 83 (83)
T PRK10638 81 LLK 83 (83)
T ss_pred HhC
Confidence 874
No 7
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.86 E-value=2.3e-21 Score=154.78 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=76.5
Q ss_pred cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
..++|+||++ ++||||.+|+++|+++|++|+++||+.+++.+++|.+++|+.|+|+|||||++|||++++++|++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 3578999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchH
Q 039225 236 SGTFD 240 (327)
Q Consensus 236 sGeL~ 240 (327)
+|+|+
T Consensus 86 ~g~L~ 90 (90)
T cd03028 86 SGELQ 90 (90)
T ss_pred cCCcC
Confidence 99984
No 8
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.85 E-value=3.6e-21 Score=148.28 Aligned_cols=79 Identities=30% Similarity=0.653 Sum_probs=76.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERF 243 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~L 243 (327)
|+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+++|+.+||+|||||++|||++++.+++++|+|+.+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998765
No 9
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.1e-21 Score=157.46 Aligned_cols=88 Identities=26% Similarity=0.454 Sum_probs=82.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG 237 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG 237 (327)
..++|+||+|++||||.++|.+|.++++.+..+++|.++ +++++|.+++|++|||.|||+|++|||+++++++|.+|
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~G 91 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKSG 91 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHcC
Confidence 468999999999999999999999999998888888753 78899999999999999999999999999999999999
Q ss_pred chHHHHHHhhc
Q 039225 238 TFDERFREMLG 248 (327)
Q Consensus 238 eL~~~Lk~~~~ 248 (327)
+|.++|+.+++
T Consensus 92 ~L~~~l~~~~~ 102 (104)
T KOG1752|consen 92 ELVPLLKEAGA 102 (104)
T ss_pred CHHHHHHHhhc
Confidence 99999998875
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=99.82 E-value=6.6e-20 Score=167.82 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=81.4
Q ss_pred cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
..++|+||+| ++||||++++++|+++|++|.++||+.+++.+++|++++|++|||||||||++|||++++++|++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYE 190 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 3589999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 039225 236 SGTFDERFRE 245 (327)
Q Consensus 236 sGeL~~~Lk~ 245 (327)
+|+|+++|.+
T Consensus 191 ~G~L~~~l~~ 200 (204)
T PTZ00062 191 SNSLRKVIPD 200 (204)
T ss_pred cCChhhhhhh
Confidence 9999998875
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.81 E-value=1.4e-19 Score=137.21 Aligned_cols=74 Identities=31% Similarity=0.703 Sum_probs=70.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCC-CccEEEeCCEEeechHHHHHhhhcC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSS-QVPQVFLNDKLFGGLVALNSLRNSG 237 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~-tVPqIFInGe~IGG~deL~~L~esG 237 (327)
+|+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+++|.. +||+|||||++|||++++++++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4899999999999999999999999999999999988889999888987 9999999999999999999999987
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-19 Score=148.73 Aligned_cols=86 Identities=17% Similarity=0.356 Sum_probs=82.5
Q ss_pred cCCcEEEEEc-----CCChhHHHHHHHHHHcC-CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 161 IKGRISFFSR-----SNCRDCTAVRRFFKQRG-LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elg-V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
..++|+||+| |.|+|+.++.++|..+| ++|..+||..|+++|+.|+++++|+|+||+||||++|||+|.+.+++
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 4689999998 67999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHh
Q 039225 235 NSGTFDERFREM 246 (327)
Q Consensus 235 esGeL~~~Lk~~ 246 (327)
++|+|+++|+++
T Consensus 93 q~GELq~~l~~~ 104 (105)
T COG0278 93 QSGELQTLLKEA 104 (105)
T ss_pred HcchHHHHHHhc
Confidence 999999999875
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.80 E-value=2.1e-19 Score=137.05 Aligned_cols=73 Identities=58% Similarity=1.065 Sum_probs=69.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
++|+||++++||+|++|+++|+++|++|+.+||.++++.++++++++|..++|+|||||++|||++++.+|++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998853
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.5e-19 Score=140.19 Aligned_cols=76 Identities=26% Similarity=0.610 Sum_probs=70.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTF 239 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL 239 (327)
.|+||++++||||.+||++|+++|+.|++++++.++ +.++.+++.+|++|||||||||++|||++++.++...|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 599999999999999999999999999999999987 6767777777999999999999999999999999888876
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.78 E-value=7.4e-19 Score=135.01 Aligned_cols=79 Identities=28% Similarity=0.534 Sum_probs=72.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCc--eEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLK--FVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTF 239 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~--y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL 239 (327)
|++|+++|||+|.+++.+|++++++ |+.++|+.+ .+.++++.+.+|..++|+||+||++|||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999998 888888764 45677899999999999999999999999999999999999
Q ss_pred HHHH
Q 039225 240 DERF 243 (327)
Q Consensus 240 ~~~L 243 (327)
..+|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 8765
No 16
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.77 E-value=1.6e-18 Score=133.10 Aligned_cols=78 Identities=29% Similarity=0.518 Sum_probs=72.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchH
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFD 240 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~ 240 (327)
+|++|+++|||+|.+++++|++++++|+.++++.+ .+.++++++++|+.++|+||+||++|||+++++++.++|+|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 48999999999999999999999999998888775 446778999999999999999999999999999999999996
Q ss_pred H
Q 039225 241 E 241 (327)
Q Consensus 241 ~ 241 (327)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 17
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.76 E-value=3.3e-18 Score=129.94 Aligned_cols=70 Identities=27% Similarity=0.523 Sum_probs=64.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+|+||++++||+|.+|+++|+++|++|+++||+.+.. ..+++.++|..+||+|||||++|||+++|.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5999999999999999999999999999999998774 457888899999999999999999999998874
No 18
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.76 E-value=3.7e-18 Score=132.73 Aligned_cols=75 Identities=28% Similarity=0.509 Sum_probs=67.4
Q ss_pred hccCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 159 EKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 159 ~~~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
++.+++|+||+++|||+|.+||++|+++|++|+++||+.+.+. .++..++|+.+||+|||||++|||+++|.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3456889999999999999999999999999999999987654 46778899999999999999999999998764
No 19
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.74 E-value=1.4e-17 Score=130.61 Aligned_cols=74 Identities=18% Similarity=0.436 Sum_probs=67.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH-----cCCceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHhhh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQ-----RGLKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~e-----lgV~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L~e 235 (327)
++|+||+++|||+|++|+++|++ .+++|+++||+.+....+++.+++|+ .+||+|||||++|||++++.++++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 46999999999999999999999 79999999999887677889888886 899999999999999999998865
Q ss_pred c
Q 039225 236 S 236 (327)
Q Consensus 236 s 236 (327)
.
T Consensus 81 ~ 81 (85)
T PRK11200 81 E 81 (85)
T ss_pred H
Confidence 3
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.73 E-value=1.7e-17 Score=131.43 Aligned_cols=73 Identities=22% Similarity=0.506 Sum_probs=65.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHhhhcC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSLRNSG 237 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L~esG 237 (327)
|+||+++|||||.+|+++|++++ +.|+++||+.+...++++.+.+|+ .+||+|||||++|||+++|.++++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 78999999999999999999984 679999999776567789889997 89999999999999999999997764
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.73 E-value=3.6e-17 Score=120.12 Aligned_cols=71 Identities=31% Similarity=0.604 Sum_probs=68.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+|++|++++||+|++++.+|++++++|.++|+..+++.++++++++|..++|+||+||++|||++++++++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 48999999999999999999999999999999999989999999999999999999999999999999875
No 22
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=156.93 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=114.3
Q ss_pred cCCcEEEEEcC------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHH
Q 039225 161 IKGRISFFSRS------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVAL 230 (327)
Q Consensus 161 ~~~kVvLYsk~------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL 230 (327)
...+||||+++ +...|..|+++|+.++|.|.++||++|..+++||+++.|. .++|+|||+|++|||.+++
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 34689999985 7999999999999999999999999999999999999875 7899999999999999999
Q ss_pred HHhhhcCchHHHHHHhhcc-----CCCCCCCCCCCCCCCCCccchhhhH--HHHHHHHHHhccCccccccccceeccCCc
Q 039225 231 NSLRNSGTFDERFREMLGR-----KCSGDAPAPPLYGFDDDDEEEESMD--EMLLSVKLLRQRLPIQDRLIKLKIVKNCF 303 (327)
Q Consensus 231 ~~L~esGeL~~~Lk~~~~~-----~~~~~ap~~P~~g~~~~~~~~~e~D--Ela~lV~~l~~~~~Ikdr~~~l~~~~~cF 303 (327)
++|++.|+|.++|++...+ ..++++++.|+.++. ++..... +-...+.++.. ++.++|.+++.|+
T Consensus 209 ~~LnE~GkL~~lL~~~p~~~~~~C~~CGg~rFlpC~~C~---GS~kv~~~~~~~~~~~rC~~-----CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 209 VRLNEEGKLGKLLKGIPCEGGGVCESCGGARFLPCSNCH---GSCKVHEEEEDDGGVLRCLE-----CNENGLVRCPVCS 280 (281)
T ss_pred hhhhhcchHHHHHhcCCCCCCCcCCCcCCcceEecCCCC---CceeeeeeccCCCcEEECcc-----cCCCCceeCCccC
Confidence 9999999999999998743 234789999999888 5555433 22233444433 8889999999997
Q ss_pred c
Q 039225 304 S 304 (327)
Q Consensus 304 ~ 304 (327)
.
T Consensus 281 ~ 281 (281)
T KOG2824|consen 281 N 281 (281)
T ss_pred C
Confidence 3
No 23
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.69 E-value=8.4e-17 Score=130.35 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=73.7
Q ss_pred EEEEEcCC------ChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSN------CRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~------Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL~~L~ 234 (327)
|+||+++- -..|..++.+|+.++|+|+++||+.+++.+++|.+.+|. +++|||||||+||||++++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 77888752 467999999999999999999999999999999999864 99999999999999999999999
Q ss_pred hcCchHHHHH
Q 039225 235 NSGTFDERFR 244 (327)
Q Consensus 235 esGeL~~~Lk 244 (327)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999885
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-16 Score=146.59 Aligned_cols=85 Identities=14% Similarity=0.304 Sum_probs=81.3
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhc
Q 039225 162 KGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNS 236 (327)
Q Consensus 162 ~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~es 236 (327)
.++|+||+| +.|+|.+++..+|+++|++|..+||..|+++|+.+++++.|+|+|||||||+++||+|.+.+++++
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 478999999 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHh
Q 039225 237 GTFDERFREM 246 (327)
Q Consensus 237 GeL~~~Lk~~ 246 (327)
|+|+..|+++
T Consensus 218 geL~~~l~~~ 227 (227)
T KOG0911|consen 218 GELVYTLKEA 227 (227)
T ss_pred ccHHHHhhcC
Confidence 9999998753
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.66 E-value=4.1e-16 Score=114.60 Aligned_cols=60 Identities=27% Similarity=0.650 Sum_probs=58.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I 224 (327)
|+||++++||+|.+++++|+++|++|+++||+.+++.+++|++.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999999999999999999999999999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.64 E-value=6.7e-16 Score=154.19 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=72.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHH---HH-----HHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK---EL-----IRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~---eL-----~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
.+|+||++++||+|++||++|++.||+|+++||+.++...+ ++ ...+|..+||||||||++|||+++++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 46999999999999999999999999999999998775433 22 223689999999999999999999987
Q ss_pred hcCchHHHHHHhh
Q 039225 235 NSGTFDERFREML 247 (327)
Q Consensus 235 esGeL~~~Lk~~~ 247 (327)
.+|+|.++|++.+
T Consensus 80 ~~g~l~~~~~~~~ 92 (410)
T PRK12759 80 RAGEVIARVKGSS 92 (410)
T ss_pred HhCCHHHHhcCCc
Confidence 8999999998755
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.55 E-value=1.4e-14 Score=110.39 Aligned_cols=63 Identities=27% Similarity=0.576 Sum_probs=58.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE-EeechH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK-LFGGLV 228 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe-~IGG~d 228 (327)
|+||++++||+|++|+++|+++|++|+++||+.+++.+++++. .|..+||+|+++|+ +|||++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 5799999999999999999999999999999999988888876 49999999999775 999996
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.54 E-value=3.1e-14 Score=112.24 Aligned_cols=65 Identities=34% Similarity=0.629 Sum_probs=60.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d 228 (327)
++|+||++++||+|.++|++|++.||+|+++||+.+++..++++. .|..+||+|+++|..++||+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 369999999999999999999999999999999999988888876 59999999999999999995
No 29
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=99.45 E-value=3.3e-14 Score=115.08 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhcc--------ccChhhhhhcC
Q 039225 276 MLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF--------KCDRMKVRFVL 327 (327)
Q Consensus 276 la~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~--------~~~r~~Av~~~ 327 (327)
+..||+.|+++..||+||++|++|++||+|+|+||||+++. +.+|.+||+|+
T Consensus 3 Wn~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~ 62 (92)
T cd04447 3 WNEVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLL 62 (92)
T ss_pred HHHHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999997 68999999874
No 30
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=99.40 E-value=1.2e-13 Score=112.70 Aligned_cols=50 Identities=30% Similarity=0.455 Sum_probs=45.6
Q ss_pred HHHHHHHhccCccccccccceeccCCcchhHHHHHHHhcc---------ccChhhhhhc
Q 039225 277 LLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF---------KCDRMKVRFV 326 (327)
Q Consensus 277 a~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~---------~~~r~~Av~~ 326 (327)
..||+.|+.+..|||||++|++|++||+|+||||||..+. ..+|++||+|
T Consensus 2 n~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l 60 (95)
T cd04446 2 NSIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRL 60 (95)
T ss_pred hHHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHH
Confidence 4689999999999999999999999999999999887743 5799999986
No 31
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.38 E-value=2.4e-12 Score=94.96 Aligned_cols=65 Identities=20% Similarity=0.554 Sum_probs=60.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d 228 (327)
+|++|+.+||++|++++.+|++.+++|..+|++.+++..+++.+.+|..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 38999999999999999999999999999999998888888888899999999999999998874
No 32
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.31 E-value=1.4e-11 Score=90.92 Aligned_cols=66 Identities=30% Similarity=0.668 Sum_probs=61.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHH
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVA 229 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~de 229 (327)
.|++|+.+||++|.+++.+|++.+++|..+|++.+.+..+++.++++..++|+|+++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 489999999999999999999999999999999888888889888889999999999999999864
No 33
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.29 E-value=8.9e-13 Score=105.01 Aligned_cols=45 Identities=33% Similarity=0.501 Sum_probs=41.7
Q ss_pred HHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 282 LLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 282 ~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
++++..+||||++++++|++||+|+||||||+++.. .+|++||.+
T Consensus 8 ~~~~~~~IkdR~~~~r~y~~cF~GselVdWL~~~~~~~sR~eAv~l 53 (82)
T cd04442 8 RLHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKI 53 (82)
T ss_pred ecCCCCeeeeeEECCEEcCceeEcHHHHHHHHHcCCCCCHHHHHHH
Confidence 457889999999999999999999999999999988 689999975
No 34
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.24 E-value=5.9e-12 Score=102.47 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=38.3
Q ss_pred cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
..+||||++++++|++||+|+||||||+++.+ .+|+|||.+
T Consensus 21 ~~likdR~~~l~~y~~cFvGsElVdWLi~~g~~~tR~eAv~~ 62 (93)
T cd04440 21 TPVVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVIL 62 (93)
T ss_pred ccceeeceeccEEcccccchhHHHHHHHHcCCCCCHHHHHHH
Confidence 45999999999999999999999999999876 899999975
No 35
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=99.23 E-value=4.4e-12 Score=100.75 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=46.0
Q ss_pred HHHHHHHHhccC--ccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225 276 MLLSVKLLRQRL--PIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV 326 (327)
Q Consensus 276 la~lV~~l~~~~--~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~ 326 (327)
++.||++|++.. .||||++++++|++||+|+|+||||+++.+ .+|+|||++
T Consensus 1 l~~i~~~m~~~~~~~i~~r~~~~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~l 55 (83)
T cd04449 1 LAEIAEAMRDPSGIGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVEL 55 (83)
T ss_pred CHHHHHHHhCCCCCceeechhcCccCCcceEhHHHHHHHHHhCCCCCCHHHHHHH
Confidence 468999997743 699999999999999999999999999976 899999976
No 36
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.23 E-value=4.8e-11 Score=89.84 Aligned_cols=64 Identities=14% Similarity=0.341 Sum_probs=56.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEe-CCEEeech
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFL-NDKLFGGL 227 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFI-nGe~IGG~ 227 (327)
+|+||+.+||++|++++.+|++++++|+.+|++.++...+++.+++ |..++|+|++ ||+.+...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 4899999999999999999999999999999999888888888887 8999999977 56666544
No 37
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=99.21 E-value=5.3e-12 Score=100.16 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=39.5
Q ss_pred hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
..+..||||++++++|++||+|+||||||+.+.. .+|+|||.+
T Consensus 10 ~~gv~i~drr~~~~~y~~cF~GselVdWL~~~~~~~~R~eAv~~ 53 (81)
T cd04448 10 STGIEFQDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAI 53 (81)
T ss_pred CCCCeeEEEEECCEEcCcccChHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467899999999999999999999999999887 999999975
No 38
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.19 E-value=8.3e-12 Score=99.14 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=39.8
Q ss_pred hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
.++.+||||++++++|++||+|+|+||||+++.. .+|+|||.+
T Consensus 10 ~~~~~ikdr~~~~~~~~~cF~GselVdWL~~~~~~~~r~eAv~l 53 (81)
T cd04439 10 KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNL 53 (81)
T ss_pred cCCCceEeeEECcEEcCceeEhHHHHHHHHHcCCCCCHHHHHHH
Confidence 5678999999999999999999999999999998 578999875
No 39
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=99.15 E-value=1.9e-11 Score=97.67 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=43.1
Q ss_pred HHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225 278 LSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV 326 (327)
Q Consensus 278 ~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~ 326 (327)
.+|+.|.+ +..||||++++++|++||+|+|||+||+++.+ .+|+||+.+
T Consensus 2 ~i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~ 55 (84)
T cd04438 2 GIPRVMRRPDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEGLTDRREARKY 55 (84)
T ss_pred chhHhhcCCCCCCceEEEEEeeEECCccccchHHHHHHHHhCCCCCCHHHHHHH
Confidence 47888843 45599999999999999999999999999986 799999875
No 40
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=99.15 E-value=1.7e-11 Score=97.77 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=37.6
Q ss_pred CccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 287 LPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 287 ~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
.+||||++++++|++||+|+||||||+++.. .+|+|||.+
T Consensus 15 ~~ikdR~~~~~~y~~cF~GselVdWL~~~~~~~sR~eAv~l 55 (83)
T cd04443 15 DIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLY 55 (83)
T ss_pred hhhccceecceeccccccHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5999999999999999999999999999876 999999975
No 41
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.14 E-value=2.5e-11 Score=97.36 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=39.7
Q ss_pred hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
..+.+||||++++++|++||+|+||||||+++.. .+|+|||++
T Consensus 14 ~~~~~ik~R~~~~~~y~~cF~GsElVdWL~~~~~~~sR~eAv~l 57 (85)
T cd04441 14 TENSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQL 57 (85)
T ss_pred CCCCceeeeEeCCEEcCCEeEchHHHHHHHHcCCCCCHHHHHHH
Confidence 4467999999999999999999999999999998 799999975
No 42
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=99.12 E-value=2.9e-11 Score=103.36 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=39.5
Q ss_pred hccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225 284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV 326 (327)
Q Consensus 284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~ 326 (327)
+++.+||||++++++|++||+|+||||||+++.. .+|++||++
T Consensus 12 ~~~~~ikdR~~~~~~y~~cF~GsElVdWLl~~~~~v~sR~eAv~l 56 (125)
T cd04437 12 DAPHLIRDRKYHLRTYRQCCVGTELVDWLLQQSPCVQSRSQAVGM 56 (125)
T ss_pred cCcccceeeeECCEECCcccccHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4468999999999999999999999999999987 499999975
No 43
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.09 E-value=2.7e-10 Score=84.60 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=50.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
+|++|+++|||+|.+++.+|+++ ++.|..+|++.+++ +.+.+|..++|+|++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 48999999999999999999876 68899999987654 566789999999999999875
No 44
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.08 E-value=8.3e-10 Score=90.88 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=63.8
Q ss_pred cEEEEEcCCC------hhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC---------CCCccEEEeCCEEeechH
Q 039225 164 RISFFSRSNC------RDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG---------SSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 164 kVvLYsk~~C------p~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG---------~~tVPqIFInGe~IGG~d 228 (327)
.|.||+++.- ..|.++..+|+.++|+|+.+||..+++.++.+++..| ..-.||||+||+++|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 4778886532 3588999999999999999999999999999998874 334589999999999999
Q ss_pred HHHHhhhcCchHHHHH
Q 039225 229 ALNSLRNSGTFDERFR 244 (327)
Q Consensus 229 eL~~L~esGeL~~~Lk 244 (327)
++.++.++|+|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 45
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=99.06 E-value=1e-10 Score=97.59 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=45.9
Q ss_pred HHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 276 MLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 276 la~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
|..|+..|++ ++-+.+|++++++|++||+|+|+||||++++. .+|.|||.+
T Consensus 2 L~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l 56 (109)
T cd04444 2 LHRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTL 56 (109)
T ss_pred HHHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHH
Confidence 6789999976 56777999999999999999999999999987 999999975
No 46
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=98.87 E-value=9.3e-10 Score=84.32 Aligned_cols=41 Identities=44% Similarity=0.664 Sum_probs=37.0
Q ss_pred cCccccccccceeccCCcchhHHHHHHHhcc---ccChhhhhhc
Q 039225 286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF---KCDRMKVRFV 326 (327)
Q Consensus 286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~---~~~r~~Av~~ 326 (327)
|+.|+||++++++|++||+|+|+||||+++. -.+|++|+.+
T Consensus 1 Gv~i~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l 44 (74)
T PF00610_consen 1 GVPIKDRRKRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQL 44 (74)
T ss_dssp SSCSEEEECSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHH
T ss_pred CCccEEEEECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHH
Confidence 4679999999999999999999999999743 5999999976
No 47
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.86 E-value=1.6e-08 Score=77.74 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=60.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN 235 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e 235 (327)
++||+.++||+|.+++.+|+++|++|+.++++.+.....++.++++..+||++.. +|..+.+...|.+..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6899999999999999999999999999999876656678888889999999987 3677888887776543
No 48
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.82 E-value=1.5e-08 Score=72.73 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=58.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
+||+.++||+|.+++.+|+.+|++|+.++++.+.....++.+.++..++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999986543333677888999999999999999998877654
No 49
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=98.78 E-value=2.6e-09 Score=82.44 Aligned_cols=42 Identities=38% Similarity=0.595 Sum_probs=39.0
Q ss_pred ccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 285 QRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 285 ~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
.+..+++|++++++|++||+|+|+|+||+++.. .+|++|+.+
T Consensus 3 ~gl~~~~~~~~~~~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l 45 (77)
T smart00049 3 TGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHL 45 (77)
T ss_pred CCcccEEEEECCEECcceeEcHHHHHHHHHcCCcCCHHHHHHH
Confidence 467789999999999999999999999999999 799999976
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.78 E-value=5.1e-08 Score=74.21 Aligned_cols=68 Identities=19% Similarity=0.395 Sum_probs=55.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC----CEEeechHHHHHhh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN----DKLFGGLVALNSLR 234 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn----Ge~IGG~deL~~L~ 234 (327)
+|+||+.++||+|++++.+|.++|++|+.++++. ..+.++ +..+..+||+++++ |..+.....+.+..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 4889999999999999999999999999999863 333445 35788999999987 67777777776543
No 51
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=98.76 E-value=4.4e-09 Score=81.43 Aligned_cols=48 Identities=33% Similarity=0.475 Sum_probs=42.8
Q ss_pred HHHHHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 279 SVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 279 lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
.+.+.+.+..+++|+++++.|++||+|+|+|+||++... .+|++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~r~ea~~~ 53 (81)
T cd04371 5 IMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVEL 53 (81)
T ss_pred HhhccCCCCccEEEEECCEECCceeEcHHHHHHHHHhCCCCCHHHHHHH
Confidence 444556678999999999999999999999999999998 999999876
No 52
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.69 E-value=9.6e-08 Score=71.75 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=56.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR 234 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~ 234 (327)
.||+..+||+|.+++.+|..+|++|+.+.++..... ...+.++..+||+++++ |..+++...+.+..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 489999999999999999999999999988854322 23356788899999997 88999999887754
No 53
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=98.63 E-value=1.4e-08 Score=81.36 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=38.1
Q ss_pred cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225 286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV 326 (327)
Q Consensus 286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~ 326 (327)
|.-+++|+++++.|++||+|+++|+||+++.. .+|+||+.+
T Consensus 12 Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~ 53 (88)
T cd04450 12 GVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDVVDPSEALEI 53 (88)
T ss_pred CeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCCCCHHHHHHH
Confidence 56778999999999999999999999999998 999999875
No 54
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.52 E-value=1.3e-07 Score=78.49 Aligned_cols=50 Identities=20% Similarity=0.602 Sum_probs=44.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV 214 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tV 214 (327)
|+||++++|++|++|+++|+++|++|+++|+..++..+.+|.++.+...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999988888888877665443
No 55
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.51 E-value=6.3e-07 Score=70.92 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=60.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL 233 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L 233 (327)
..+.++||+.+.||+|.+++.+|...|++|+.++++... ..+++.+.++..+||++.++ |..+.....+.+.
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 567899999999999999999999999999999887543 23457788889999999998 7888877766654
No 56
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.50 E-value=5.3e-07 Score=68.59 Aligned_cols=55 Identities=27% Similarity=0.503 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH----cC--CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQ----RG--LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~e----lg--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe 222 (327)
+|++|+.+||++|+.++..|.+ ++ +.+..+|++.+++ +.+.+|..++|++++||+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCCccCCEEEECCE
Confidence 4889999999999999999864 34 5677888876654 344578899999999997
No 57
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.46 E-value=8e-07 Score=66.40 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=56.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
++||+.++||+|.+++.+|+..|++|+.++++... ...++++.....+||++..+|..+.....+.+..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 36999999999999999999999999998887542 2356777788899999988888777777666543
No 58
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.45 E-value=8.4e-07 Score=66.81 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=55.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHH
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNS 232 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~ 232 (327)
+||+.++||+|.+++.+|.++|++|+.++++.... ..++.+++...+||++..+ |..+.....+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 68999999999999999999999999998876432 3567788899999999996 888777666654
No 59
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.44 E-value=1.5e-06 Score=68.11 Aligned_cols=53 Identities=15% Similarity=0.582 Sum_probs=44.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC----CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVDVFPPREKELIRRTGSSQVPQVFLND 221 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG 221 (327)
+|++|++++|+.|..|+.+|.... +.++.+||+.+++ +.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 489999999999999999999764 6689999997776 6667785 799999999
No 60
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.44 E-value=2.9e-07 Score=74.97 Aligned_cols=49 Identities=18% Similarity=0.385 Sum_probs=44.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQ 213 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~t 213 (327)
|+||++++|++|++|+++|++.|++|+++||..++...++|.++.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999999999988887888888776544
No 61
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.40 E-value=1e-06 Score=65.45 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=54.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L 233 (327)
+||+.++|++|.+++.+|+.+|++|+.+.++.. .....++.+++...++|++.+ ||..+.....+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 699999999999999999999999988887642 234456888888999999997 66666666655443
No 62
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.37 E-value=1.7e-06 Score=66.09 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=58.9
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
||..++||||.+++-+|+.+|++|+.++++.... ..++.++++..+||++..||..+.+...|.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence 6899999999999999999999999999986443 567888899999999999999999888876653
No 63
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.37 E-value=1.7e-06 Score=64.91 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=57.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
++||+.+.|++|.+++.+|++.|++|+.++++. .....+++.+++...+||.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 369999999999999999999999999888874 334456788888889999999998877766666544
No 64
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.34 E-value=1.2e-06 Score=70.11 Aligned_cols=59 Identities=24% Similarity=0.507 Sum_probs=49.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
-.|.+|+.+||++|..++.+++++ ++.|..+|++..+ ++.+.+|..++|.+++||+.++
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~----e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ----DEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH----HHHHHcCCccCCEEEECCEEEE
Confidence 357889999999999999998766 6889999998664 3555789999999999998664
No 65
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.30 E-value=2.1e-06 Score=66.42 Aligned_cols=55 Identities=16% Similarity=0.451 Sum_probs=43.1
Q ss_pred cEEEEEcCCChhHHHH----HHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225 164 RISFFSRSNCRDCTAV----RRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~a----k~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I 224 (327)
.|.+|+ +|||.|+.+ +++++++++.++.++|+...+ .. .+|..++|+|++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence 466776 999999999 567778888899899983222 22 36999999999999755
No 66
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.28 E-value=3.8e-06 Score=62.44 Aligned_cols=69 Identities=17% Similarity=0.355 Sum_probs=57.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
+++|+.+.|++|.+++.+|...|++|+.++++.. .....++.+.+...++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999988742 33446677788889999999999888777766543
No 67
>PHA02125 thioredoxin-like protein
Probab=98.26 E-value=3.6e-06 Score=64.64 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=42.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
|++|+.+||+.|+.++.+|++..+. .++|+.+.. .++.+.++..++|++. +|+.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~--~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYT--YVDVDTDEG--VELTAKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhhe--EEeeeCCCC--HHHHHHcCCceeCeEE-CCEEEE
Confidence 8999999999999999999876544 445543332 3577778999999987 676543
No 68
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.26 E-value=1.9e-06 Score=73.73 Aligned_cols=47 Identities=17% Similarity=0.440 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS 211 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~ 211 (327)
|+||++++|++|++|+++|++.|++|+++|+..++..+++|..+...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 88999999999999999999999999999999998888888776543
No 69
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=98.24 E-value=5.3e-07 Score=73.88 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhcccc-Chhhhhhc
Q 039225 276 MLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC-DRMKVRFV 326 (327)
Q Consensus 276 la~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~~-~r~~Av~~ 326 (327)
+.+||..|++ +.---+++...++|++||+|+.+||||+.+... +|.||+-+
T Consensus 2 L~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~l 56 (99)
T cd04445 2 LSALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLML 56 (99)
T ss_pred HHHHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHH
Confidence 5677888854 434447788889999999999999999999996 49999754
No 70
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.16 E-value=3.8e-06 Score=70.08 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||+.++|++|++|+++|++.|++|+.+|+..++..+++|.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 5799999999999999999999999999999998887777776543
No 71
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.14 E-value=4.7e-06 Score=69.37 Aligned_cols=46 Identities=20% Similarity=0.467 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||+.++|++|++|+++|++.|++|+.+|+..++..+.+|.++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 7899999999999999999999999999999988877777777644
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.06 E-value=2.2e-05 Score=60.56 Aligned_cols=54 Identities=20% Similarity=0.479 Sum_probs=40.4
Q ss_pred cEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE
Q 039225 164 RISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~ 223 (327)
+|.+ ..++|++|..+.+++ .++++.++.+|+. +. +++ ..+|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~~---~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-DF---EEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-TH---HHH-HHTT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-CH---HHH-HHcCCCCCCEEEECCEE
Confidence 4777 567799999877655 5668889888983 32 234 56899999999999984
No 73
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.05 E-value=7.9e-06 Score=70.14 Aligned_cols=46 Identities=13% Similarity=0.375 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||+.++|++|++|+++|++.|++|+++|+..++...++|..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 8899999999999999999999999999999998877777777654
No 74
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.02 E-value=1e-05 Score=69.56 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||+.++|+.|++|+++|+++|++|+++|+..++..+++|..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~ 47 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILT 47 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999999999998877777766643
No 75
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.00 E-value=9.3e-06 Score=67.07 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||+.++|+.|++|+++|++.|++|+++|+..++-..++|..+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999998877777777654
No 76
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.98 E-value=9.2e-06 Score=67.28 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=41.9
Q ss_pred cEEEE-EcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFF-SRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLY-sk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.|++| +.+||++|+.++.+|+++. +.+..+|++.++ ++.+.+|..++|++++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEEE
Confidence 45555 6799999999999998764 568888888655 4667789999999988
No 77
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.96 E-value=3.9e-05 Score=57.70 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
+.||+|.+++.+|+.+|++|+.++++... ++...+||++..+|+.+.++..+.+..+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 38999999999999999999999998532 4566799999999999999988776543
No 78
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.92 E-value=6.7e-05 Score=56.58 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=58.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+++|..+.|++|.+++-+|...|++|+.+.++.. .....++.+++...++|.+..+|..+.....+.+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 6799999999999999999999999999888753 233456778888899999999988888777776654
No 79
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.89 E-value=5.5e-05 Score=57.91 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=57.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
+++|..++|++|.+++-+|+++|++|+.++++.. .....++.+++...+||.+..||..+.....|.+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 4689999999999999999999999998887653 23345688899999999999999888877766554
No 80
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.87 E-value=7.5e-05 Score=56.34 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC-CCCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG-SSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG-~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+.+|..+.||+|.+++-+|...|++|+.++++.. ....++.++.. ..++|.+..+|..+.....+.+..
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 3689999999999999999999999999887753 22234556665 489999998888777777666543
No 81
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.85 E-value=2.9e-05 Score=65.13 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=42.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
.|+||+.+.|+.|++|+++|+++|++|+++|+..++-.+++|..+..
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 37899999999999999999999999999999998877777877644
No 82
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.77 E-value=5.8e-05 Score=72.80 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=64.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh------hc
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR------NS 236 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~------es 236 (327)
-++++|...+||||.+||++|+-+|++|..++|+ +-.+++++ .+.+..||.+.+.|+-+-..+-|..+. ..
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 4799999999999999999999999999999998 77777775 468899999999998777777666554 22
Q ss_pred CchHHHHHH
Q 039225 237 GTFDERFRE 245 (327)
Q Consensus 237 GeL~~~Lk~ 245 (327)
..|.++++.
T Consensus 166 q~l~eiiq~ 174 (370)
T KOG3029|consen 166 QDLGEIIQM 174 (370)
T ss_pred CCHHHHHHh
Confidence 345555544
No 83
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.75 E-value=0.00017 Score=54.79 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=57.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+++|..+.|+.|.+++.+|.+.|++|+.+.++. .....++..++...++|.+..+|..+.....+....
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 678999999999999999999999999998875 233446777777889999999999888887776654
No 84
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.71 E-value=0.00015 Score=53.82 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=55.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
++|....|+.|.+++.+|..+|++|+.+.++.. .....++.+.+...++|++..+|..+.....+.+.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 589889999999999999999999998888653 23345677788889999999999888777766554
No 85
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.70 E-value=0.00015 Score=54.41 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHH--cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQ--RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~e--lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L 233 (327)
++|..+.|++|.+++-+|.. .|++|+.+.++.. ....++.+.....+||.+.. ||..+.....+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 8999999988742 22345667778899999985 77777777666544
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.68 E-value=0.00016 Score=57.41 Aligned_cols=59 Identities=19% Similarity=0.501 Sum_probs=44.1
Q ss_pred EEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeech
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGL 227 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~ 227 (327)
+++|+.+||+.|+.+...|++ -++.+..+|++.+++ +....+..++|.+++ +|+.++-.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCeeccEEEEEECCeEEEEE
Confidence 566888999999999988876 246788888887654 445567889998854 77765433
No 87
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.68 E-value=0.00017 Score=54.17 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
++||....|+.|.+++-+|...|++|+.+.++.......++..++...++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 368999999999999999999999999998875332223466677789999999999888777766654
No 88
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.66 E-value=0.00013 Score=61.50 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=43.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCCh--h-----HHHHHHHHh----CCCCccEE--EeCCEEeec
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFP--P-----REKELIRRT----GSSQVPQV--FLNDKLFGG 226 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~--e-----~~~eL~~lt----G~~tVPqI--FInGe~IGG 226 (327)
-|+.|+.+|||+|+.+...|+++ ++++-.+|++.+. + -..++.+.. +...+|++ |-||+.++.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence 47778899999999987777544 5778889998653 1 112343433 34559998 458986654
Q ss_pred h
Q 039225 227 L 227 (327)
Q Consensus 227 ~ 227 (327)
.
T Consensus 106 ~ 106 (122)
T TIGR01295 106 R 106 (122)
T ss_pred E
Confidence 4
No 89
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.65 E-value=0.0002 Score=61.67 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=55.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE-e--CCEEeechHHHHHhh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF-L--NDKLFGGLVALNSLR 234 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-I--nGe~IGG~deL~~L~ 234 (327)
-|+.|+.+||++|+.....|.++ ++.|..+|++.+. ...+...++...+|+++ + +|+.++-.... .
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~---~ 97 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL---Q 97 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC---C
Confidence 35568889999999998777643 2456777776432 12455667889999885 4 47655433221 1
Q ss_pred hcCchHHHHHHhhccCCCCCC
Q 039225 235 NSGTFDERFREMLGRKCSGDA 255 (327)
Q Consensus 235 esGeL~~~Lk~~~~~~~~~~a 255 (327)
...+|.++|+.+.++.+++.+
T Consensus 98 ~~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 98 PKQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred CHHHHHHHHHHHHcCCCCCcc
Confidence 223467778877776665544
No 90
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.62 E-value=0.00039 Score=56.48 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
..||||++++-.|.++|++|+.++|+.... -+.+.+++-...||++..+|..+...+.+.+..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 579999999999999999999888875421 145777777789999999999888887776654
No 91
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.62 E-value=0.00019 Score=48.56 Aligned_cols=56 Identities=32% Similarity=0.599 Sum_probs=45.0
Q ss_pred EEEEEcCCChhHHHHHHHHH-----HcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC
Q 039225 165 ISFFSRSNCRDCTAVRRFFK-----QRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLND 221 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~-----elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG 221 (327)
+++|...+|++|.+++..+. ..++.+..++++......+. ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEe
Confidence 46889999999999999999 56788999999887665443 2346778999998766
No 92
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.60 E-value=0.0002 Score=57.24 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=41.6
Q ss_pred cEEEEEcCCChhHHHHHHHH------HH-c--CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFF------KQ-R--GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL------~e-l--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
-++.|+.+||++|++....+ .+ + ++.+..+|++.+.....++.+..|..++|++++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 36678899999999987543 11 1 567778888776655567888889999998854
No 93
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.59 E-value=0.00033 Score=53.34 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=51.7
Q ss_pred EEEEEcC-------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 165 ISFFSRS-------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~-------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
++||... .||+|.+++.+|+..|++|+.++++. .+.+...++|.+..+|+.+.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 5788876 57999999999999999999988863 14567889999999999988888776654
No 94
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.57 E-value=0.00041 Score=56.88 Aligned_cols=64 Identities=20% Similarity=0.398 Sum_probs=48.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L 233 (327)
|+.|+.+||+.|+.+...|+++ ++.|..+|++.. ++.+..+..++|++ |-+|+.++....+..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 5568889999999998888754 456777777643 56777788999987 5699988766555544
No 95
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.55 E-value=0.00018 Score=65.77 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=43.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe 222 (327)
.|++|+.+||++|..++.+++++ .+.+..+|++.+++ +...+|..++|+++|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKG 195 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecC
Confidence 57779999999999999999875 35566777776554 555689999999999754
No 96
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.53 E-value=0.00045 Score=52.98 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=54.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeC---CEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLN---DKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFIn---Ge~IGG~deL~~L 233 (327)
++||..+. ++|.+++.+|+++|++|+.+.++. ......++.+++...+||.+..+ |..+.....|.+.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 67999886 999999999999999998877764 23445677788888999999887 7777776666554
No 97
>PRK10026 arsenate reductase; Provisional
Probab=97.53 E-value=0.00017 Score=62.97 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=42.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
..|+||..+.|.-|++|++||+++|++|+++|+-.++-..++|+.+..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 469999999999999999999999999999999988766677776644
No 98
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.52 E-value=0.00029 Score=63.82 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhhh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLRN 235 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~e 235 (327)
++|....||+|.+++-+|..+|++|+.+++..+... ...++++..+||++. .||..+++...|.+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 379999999999999999999999999988654322 234567788999997 78889999888877543
No 99
>PRK10387 glutaredoxin 2; Provisional
Probab=97.52 E-value=0.00035 Score=62.17 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=53.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE-EeCCEEeechHHHHHhh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV-FLNDKLFGGLVALNSLR 234 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI-FInGe~IGG~deL~~L~ 234 (327)
++||+...||+|.+++-+|+.+|++|+.++++..... .. .+.++..+||+| ..+|..+.....|....
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL 69 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI 69 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence 3689999999999999999999999999998654332 22 346677899999 46788888777766543
No 100
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00018 Score=60.93 Aligned_cols=46 Identities=22% Similarity=0.533 Sum_probs=41.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT 209 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt 209 (327)
.|+||..+.|.-|++|++||+++|++|+++|+..++-.+++|.++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 4899999999999999999999999999999999887777777764
No 101
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.49 E-value=0.00064 Score=50.72 Aligned_cols=59 Identities=25% Similarity=0.461 Sum_probs=45.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH-----cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQ-----RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG 225 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~e-----lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG 225 (327)
.-+++|+.+||++|..+...|++ .++.+..+|++...+ +.+..+...+|++++ +|+.++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE----LAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh----HHHhcCcccccEEEEEECCEEEE
Confidence 34777889999999999999987 677888888886554 344467788999876 777443
No 102
>PRK09381 trxA thioredoxin; Provisional
Probab=97.47 E-value=0.00054 Score=55.13 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=43.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeech
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGL 227 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~ 227 (327)
-++.|+.+||+.|+.+...|+++ ++.+..+|++..+. +....+..++|++++ +|+.++.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh----HHHhCCCCcCCEEEEEeCCeEEEEe
Confidence 36668899999999998777643 35567778876554 444568899998855 88866543
No 103
>PHA02278 thioredoxin-like protein
Probab=97.44 E-value=0.00062 Score=55.98 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=45.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG 225 (327)
-|+-|+.+||+.|+.+...|+++ .+.+..+||+.++.-..++.+..+..++|++ |-||+.++
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence 35558889999999998877654 2458888998754223457777888999988 45888653
No 104
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=97.44 E-value=7.7e-05 Score=76.44 Aligned_cols=52 Identities=31% Similarity=0.503 Sum_probs=46.0
Q ss_pred HHHHHHHHHHh---ccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhh
Q 039225 274 DEMLLSVKLLR---QRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRF 325 (327)
Q Consensus 274 DEla~lV~~l~---~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~ 325 (327)
-+|+.+|+.|- .++-||||-|-..+.||.|+|+++||||.+|-+ -+|.||-+
T Consensus 391 ~d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~ 447 (626)
T KOG3571|consen 391 MDMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARK 447 (626)
T ss_pred ccHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHH
Confidence 38999999992 378999998888889999999999999999998 88998854
No 105
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.41 E-value=0.00023 Score=59.37 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
|+||..++|.-|++|+++|++.|++|+.+|+...+-..++|..+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5799999999999999999999999999999988766667766644
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.40 E-value=0.0006 Score=53.11 Aligned_cols=58 Identities=24% Similarity=0.496 Sum_probs=43.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG 225 (327)
-|+.|+.+||+.|+..+..|.+. ++.+-.+|++... .+.+..+...+|+++ -+|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccc----hhhhccCCCCCCEEEEEECCcEEE
Confidence 46678889999999999888644 3667777877553 466677889999984 4777554
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.40 E-value=0.00078 Score=56.88 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=44.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG 225 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG 225 (327)
|+-|+.+||+.|+.+...|.++- +.+-.+|++..++ +...+|..++|++ |-||+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence 44599999999999988886552 4577888887664 6667788999998 45888765
No 108
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.39 E-value=0.00021 Score=73.33 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
...|.+|++++||||..|++.++++ +|..+.+|....++ +.+.++..+||++|+||+.++
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence 3568999999999999999998776 35567777665555 555678899999999998553
No 109
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.39 E-value=0.00029 Score=58.54 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=39.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT 209 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt 209 (327)
|+||..++|.-|++|+++|++.|++|+++|+.+++-..++|..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 579999999999999999999999999999988776566665543
No 110
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.38 E-value=0.00036 Score=54.08 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR 234 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~ 234 (327)
++|++|.+++.+|..+|++|+.+.++.. .....++ ++....+||.+..+ |..+.+...+.+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 5799999999999999999988877643 2223344 56678899999988 88888887776654
No 111
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.38 E-value=0.00022 Score=73.23 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
..+|.+|++++||||..|++.++++. |..+.+|....++ +.+.++..+||++||||+.++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEE
Confidence 35689999999999999999998764 4556666655554 556678899999999998654
No 112
>PRK10853 putative reductase; Provisional
Probab=97.37 E-value=0.00015 Score=61.27 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT 209 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt 209 (327)
|+||..+.|.-|++|+++|+++|++|+.+|+-.++-..++|..+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 789999999999999999999999999999998876667777664
No 113
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.32 E-value=0.0013 Score=49.71 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=54.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
+++|..+.++.|++++-+|...|++|+.+.++.. +....++.+.....+||.+..+|..+.....+...
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999998887642 22334677778889999999888777666655544
No 114
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.31 E-value=0.00044 Score=59.18 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=41.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG 210 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG 210 (327)
.|+||..+.|.-|++|+++|++.|++|+.+|+..++-..++|..+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 47899999999999999999999999999999988777777777654
No 115
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.31 E-value=0.001 Score=50.50 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=54.3
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L 233 (327)
++|+.+.|++|.+++-+|...|++|+.++++... ...+++.+++-..++|++..+ |..+.....+.+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 4899999999999999999999999998887642 334567788888999999985 7767666555544
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.31 E-value=0.00076 Score=55.89 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL 230 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL 230 (327)
|+.|+.+||+.|+.+...|.++ ++.+..+|++..++ +.+..+..++|++ |-+|+.++-...+
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 5567889999999999888663 46788888887654 5556688889987 5589866544333
No 117
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.28 E-value=0.0015 Score=59.60 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=44.1
Q ss_pred cEEEEEc---CCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225 164 RISFFSR---SNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG 225 (327)
Q Consensus 164 kVvLYsk---~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG 225 (327)
.|++|+. +||+.|+.+..+|++. ++.+..++++.+.. .++.+.+|..++|++.+ ||+.++
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~~~Pt~~~f~~g~~~~ 91 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVERVPTTIILEEGKDGG 91 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCCccCEEEEEeCCeeeE
Confidence 4777888 9999999999998766 24456777775432 35777789999999866 655543
No 118
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.23 E-value=0.00069 Score=51.21 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHcCCceEEEEcCC--Ch-hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhhh
Q 039225 172 NCRDCTAVRRFFKQRGLKFVEINVDV--FP-PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLRN 235 (327)
Q Consensus 172 ~Cp~C~~ak~iL~elgV~y~eiDVd~--d~-e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~e 235 (327)
.||||.+++-+|..+|++|+..-+.. .. ....++.++++..+||.+.. +|+.++....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 49999999999999999988766632 22 22356888999999999998 8999998888876643
No 119
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.22 E-value=0.00044 Score=71.73 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=47.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~ 223 (327)
..|.+|..++||+|.++.+.+++. +|..+.+|+...+ ++.+.++..+||.++|||+.
T Consensus 478 ~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~----~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 478 VNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP----DLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred eEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH----HHHHhCCceecCEEEECCEE
Confidence 468899999999999988776543 6889999998765 46656899999999999973
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.22 E-value=0.0012 Score=51.00 Aligned_cols=58 Identities=26% Similarity=0.480 Sum_probs=42.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG 225 (327)
-++.|+.+||++|+.+...|+++ ++.+-.+|.+.+.+ +.+..|..++|++++ +|+.++
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEee
Confidence 35667889999999998777653 26677778776544 445568899999876 776543
No 121
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.17 E-value=0.0027 Score=51.26 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG 225 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG 225 (327)
|+.|+.+||+.|+.....|.++ ++.|..+|++.++.. .++.+..+...+|++++ ||+.++
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 5558889999999998888654 466777888765432 35666778899997744 787553
No 122
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00099 Score=55.20 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=64.5
Q ss_pred CcEEEEEcCCChh------HHHHHHHHHHcCCceEEEEcCCChhHHHHH--------HHHhCCCCccEEEeCCEEeechH
Q 039225 163 GRISFFSRSNCRD------CTAVRRFFKQRGLKFVEINVDVFPPREKEL--------IRRTGSSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 163 ~kVvLYsk~~Cp~------C~~ak~iL~elgV~y~eiDVd~d~e~~~eL--------~~ltG~~tVPqIFInGe~IGG~d 228 (327)
+.|.+|+++.-+. =..+..+|+...+.++++||..+.+.++++ +-..|.+.-||||-++++.|+++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 3466777654332 235667888889999999998876655443 44568888999999999999999
Q ss_pred HHHHhhhcCchHHHHHHh
Q 039225 229 ALNSLRNSGTFDERFREM 246 (327)
Q Consensus 229 eL~~L~esGeL~~~Lk~~ 246 (327)
.+.+..++..|++.|+-+
T Consensus 82 ~F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 999999998888888643
No 123
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.13 E-value=0.0025 Score=47.97 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
.+|..+++++|.+++-+|.+.|++|+.++++.. ....+++.+++...+||.+..+|..+.....+.+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 589999999999999999999999998887642 2344567778888999999999887776665544
No 124
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.13 E-value=0.0017 Score=58.51 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=55.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
.++||+.+.|++|.+++-+|.+.|++|+.+.|+.. ....++.+++-..+||++..||..+-....|..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence 47899999999999999999999999999998753 233567778778999999998877666655544
No 125
>PTZ00051 thioredoxin; Provisional
Probab=97.10 E-value=0.0027 Score=49.77 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=42.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEeech
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFGGL 227 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IGG~ 227 (327)
-++.|+.+||+.|+++...|..+ ++.|..+|++... .+.+..+..++|+++ -+|+.++.+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~ 87 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKENITSMPTFKVFKNGSVVDTL 87 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHCCCceeeEEEEEeCCeEEEEE
Confidence 35668899999999998888764 4667777877543 345556778889774 477655433
No 126
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00093 Score=59.06 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=44.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I 224 (327)
||-|+.+||.-|+...-+|+++- +.+-.+|++++.+ |...++...||+| |.||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcceeeeeEEEEEECCEEe
Confidence 55699999999999999998763 4566777777665 6667888999998 5688755
No 127
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.06 E-value=0.0024 Score=48.28 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=51.6
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L 233 (327)
+||+.+.| .|.+++.+|.+.|++|+.++++... ....++.+++...++|.+..+ |..+.....|.+.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 58888876 4889999999999999887776532 334677788889999999887 7766666665554
No 128
>PRK10996 thioredoxin 2; Provisional
Probab=97.01 E-value=0.003 Score=54.09 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=41.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG 225 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG 225 (327)
.-++.|+.+||+.|+.....|.+. ++.+..+|++..++ +.+..+..++|++++ +|+.+.
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEECCEEEE
Confidence 346678899999999987777653 34566677765544 555678888998754 787553
No 129
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.91 E-value=0.004 Score=46.61 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
++|+.+. +.|.+++-+|...|++|+.+.++.. .....++.+++...++|.+..+|..+.....+.+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4777665 6789999999999999988887643 233456777788899999999998888887776654
No 130
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.86 E-value=0.0039 Score=50.02 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH---c------CCceEEEEcCCChh----------------HHHHHHHHhCCCCccE
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQ---R------GLKFVEINVDVFPP----------------REKELIRRTGSSQVPQ 216 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~e---l------gV~y~eiDVd~d~e----------------~~~eL~~ltG~~tVPq 216 (327)
+..|++|+.+|||||+++.+.+.. . ++.+..++++.+.. ...++.+..|...+|+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 445888999999999999766653 1 23455566654321 2345777789999999
Q ss_pred EEe-C--CE---EeechH
Q 039225 217 VFL-N--DK---LFGGLV 228 (327)
Q Consensus 217 IFI-n--Ge---~IGG~d 228 (327)
+++ | |+ .+-|+-
T Consensus 86 ~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp EEECTTTSCEEEEEESS-
T ss_pred EEEEcCCCCEEEEecCCC
Confidence 975 3 66 344554
No 131
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.80 E-value=0.003 Score=52.17 Aligned_cols=58 Identities=29% Similarity=0.423 Sum_probs=38.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHH-------H--cCCceEEEEcCCChh---------HHHHHHHHhCCCCccEEE-eC
Q 039225 163 GRISFFSRSNCRDCTAVRRFFK-------Q--RGLKFVEINVDVFPP---------REKELIRRTGSSQVPQVF-LN 220 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~-------e--lgV~y~eiDVd~d~e---------~~~eL~~ltG~~tVPqIF-In 220 (327)
.-++.|+.+||++|++....+. . .++.+..+|++.+.. ...++...++..++|+++ ++
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~ 92 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLD 92 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEc
Confidence 3466688999999999875442 1 145566677765421 124677778889999964 44
No 132
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.80 E-value=0.0043 Score=49.28 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK 222 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe 222 (327)
-++.|+.+||+.|++....|.++ .+.+-.+|++.++. +.+..+..++|+++ -+|+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCC
Confidence 36678899999999998887654 24566788876543 44556788999884 4665
No 133
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.80 E-value=0.0035 Score=52.76 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=46.7
Q ss_pred CcEEEEEcCC--ChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHH
Q 039225 163 GRISFFSRSN--CRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVA 229 (327)
Q Consensus 163 ~kVvLYsk~~--Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~de 229 (327)
..|+.|+.+| ||.|..+..+|.++. +.+-.+|++.++ ++...++..++|++ |-||+.++....
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~~G 101 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVLAG 101 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEEeC
Confidence 3466678885 999999998886652 345577777655 57777899999998 459998775543
No 134
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.77 E-value=0.0061 Score=49.03 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc----C---CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR----G---LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el----g---V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I 224 (327)
|+.|+.+||+.|+.....|... + +.+..+|++ .+ ++.+..+..++|++ |-||+.+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEEE
Confidence 5668899999999998777543 2 345666666 22 35566788999976 4577644
No 135
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.77 E-value=0.005 Score=48.69 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=39.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.++.|+.+||+.|++....|.++ ++.+-.+|++.++. +.+..+..++|++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEE
Confidence 47778999999999998887644 35567777776554 555668889999975
No 136
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0043 Score=49.26 Aligned_cols=67 Identities=15% Similarity=0.312 Sum_probs=49.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHH-----------HhCCCCccEEEeC-CEEeechHHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIR-----------RTGSSQVPQVFLN-DKLFGGLVALN 231 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~-----------ltG~~tVPqIFIn-Ge~IGG~deL~ 231 (327)
-++|....||.|..+++.|+.+++.|+.++|...- .+++.|.- -.|+-.+|.+.++ |+.|=| +|+.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence 47999999999999999999999999999997642 23222211 1477889999876 455544 4444
Q ss_pred H
Q 039225 232 S 232 (327)
Q Consensus 232 ~ 232 (327)
+
T Consensus 83 k 83 (85)
T COG4545 83 K 83 (85)
T ss_pred h
Confidence 3
No 137
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.74 E-value=0.0073 Score=54.09 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=44.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL 230 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL 230 (327)
|+-|+.+||+.|+.+...|..+ .+.|..+|++.. ++....+..++|++ |.||+.++.+..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEech
Confidence 4448889999999988877655 356777777742 56677788999977 5699977644333
No 138
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.71 E-value=0.0071 Score=56.84 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
..||+|++++-.|..+|++|+.+.|+.... .+++.+++-..+||++..+|..+.....|.+..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL 79 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFL 79 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHH
Confidence 579999999999999999998888875422 356778888899999998888877776665543
No 139
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.71 E-value=0.0075 Score=49.40 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=41.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHH----c---CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQ----R---GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~e----l---gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG 225 (327)
-++.|+.+||+.|+.....|.+ + ++.+-.+|++.++. +....|..++|+++ .+|+.++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEEE
Confidence 4566889999999988766532 2 46677788776543 45567889999885 5787553
No 140
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.70 E-value=0.0058 Score=48.55 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=39.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--ND 221 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nG 221 (327)
-++.|+.+||+.|+++...++++ ++.+-.+|.+..++ +.+..|...+|++++ +|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEEEcCC
Confidence 36668899999999988777544 35677788876543 555568899998843 55
No 141
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.69 E-value=0.009 Score=46.55 Aligned_cols=56 Identities=20% Similarity=0.448 Sum_probs=39.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I 224 (327)
++.|+.+||+.|+++...|+++ .+.+-.+|++..+ ++.+..+..++|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcCCccccEEEEEECCEEE
Confidence 5668899999999998888753 3445555555433 45566788889976 4577744
No 142
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.66 E-value=0.0065 Score=48.89 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR------------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK 222 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el------------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe 222 (327)
++.|+.+||++|++....|++. .+.+-.+|.+.+. ++.+..|..++|+++ -+|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCCCCcCCEEEEEeCCc
Confidence 6678899999999998877532 2456677777654 466667889999885 4565
No 143
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.66 E-value=0.01 Score=45.02 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=51.4
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 170 RSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 170 k~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
...|++|.+++-+|...|++|+.+.++... +...++.+++...++|.+..+|+.+.....+.+.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 467999999999999999999988887532 2345677888889999999999888777666543
No 144
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.64 E-value=0.0062 Score=53.63 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=43.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHh--CCCCccEE--EeCCEEeechH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRT--GSSQVPQV--FLNDKLFGGLV 228 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~lt--G~~tVPqI--FInGe~IGG~d 228 (327)
|+.|+.+||+.|+.....|.++ ++.+-.+|++.++++.+.+.-.+ |..++|++ |.+|+.++...
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~ 125 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRP 125 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEe
Confidence 6779999999999998777543 36778889888776544332111 12338876 66888775443
No 145
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.64 E-value=0.0041 Score=51.18 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=30.0
Q ss_pred EEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH
Q 039225 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR 208 (327)
Q Consensus 168 Ysk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l 208 (327)
|..+.|.-|++|+++|++.|++|+.+|+...+-.+++|.++
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~ 41 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELREL 41 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHH
Confidence 78899999999999999999999999999877655565554
No 146
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0044 Score=60.29 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=49.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL 230 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL 230 (327)
+|.|+.+||+.|+.....|.++ ++.+..+|++.++. +....|..++|+| |++|+.|-||-..
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqfgiqsIPtV~af~dGqpVdgF~G~ 116 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQFGVQSIPTVYAFKDGQPVDGFQGA 116 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHhCcCcCCeEEEeeCCcCccccCCC
Confidence 5557789999999999999766 24567888887775 5556789999998 6899999888644
No 147
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.63 E-value=0.007 Score=47.28 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I 224 (327)
++.|+.+||+.|++....|.+.. +.+-.+|++... ++.+..+..++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcCCCCCCEEEEEeCCEEe
Confidence 55688899999999988776542 345666766544 455567889999986 467654
No 148
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.58 E-value=0.0073 Score=48.77 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=36.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcC-CChhHHHHHHHHhCCCCccEEE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVD-VFPPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIF 218 (327)
-++.|+.+||+.|++....|+++ ++.+..+|.+ .++ .+.+.++...+|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEE
Confidence 35668999999999998888655 3455556655 333 466677889999875
No 149
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.55 E-value=0.0096 Score=45.34 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=37.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH----c----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQ----R----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~e----l----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-+++|+.+||++|+.+...|.+ + ++.+..+|.+. ...+.+..|...+|++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----hHHHHHhCCCCCCCEEEE
Confidence 45778999999999999887754 3 23455555554 235666678899998853
No 150
>PRK15113 glutathione S-transferase; Provisional
Probab=96.55 E-value=0.011 Score=53.43 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=54.6
Q ss_pred cEEEEEcC--CChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225 164 RISFFSRS--NCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 164 kVvLYsk~--~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
.++||+.+ .|++|.+++-+|.++|++|+.+.++.. +....++.+++-...||++..||..|-...-|..
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHH
Confidence 37899965 799999999999999999998887753 2344677788888999999999877765555544
No 151
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.35 E-value=0.013 Score=45.83 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
-+++|+.+||+.|++....|.+. .+.+..+|++...+ +.+..|...+|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCCccCEEEE
Confidence 36678889999999998777653 34566677765443 455668889998743
No 152
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.33 E-value=0.0091 Score=47.51 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=38.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
-++.|+.+||++|++....|.++ .+.+..+|++.+. ..++....+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence 47778899999999987777654 2445667777532 234656678899998864
No 153
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.31 E-value=0.01 Score=46.05 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=37.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-+++|+.+||+.|++....|... ++.+..+|++.+. .+.+..|...+|.+++
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCCCCcCCEEEE
Confidence 447889999999999887666543 2556666766544 4555678899999844
No 154
>PLN02473 glutathione S-transferase
Probab=96.30 E-value=0.016 Score=51.91 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=55.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
++||+.+.+++|.+++-+|.++|++|+.+.++.. +....++.+++-..+||.+..||..|....-|.+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence 6799999999999999999999999988876542 23444565677778999999999888777766653
No 155
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=96.29 E-value=0.002 Score=72.04 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225 273 MDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV 326 (327)
Q Consensus 273 ~DEla~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~ 326 (327)
.-.++.+++.|.+ .-|+++-++-+.+++||.|+|+|.||+.++. -+|++||++
T Consensus 1273 lStLtk~lq~m~~-~klq~~~wh~~~~e~CF~gsE~VnWL~n~f~gI~Tre~Aiky 1327 (1701)
T KOG3572|consen 1273 LSTLTKLLQLMND-IKLQYQGWHPDPNELCFRGSEWVNWLQNYFAGIETREKAIKY 1327 (1701)
T ss_pred HHHHHHHHhccCC-CceeeecccCCcchhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3345555555555 5788999999999999999999999999998 899999975
No 156
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.29 E-value=0.013 Score=47.60 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=37.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF 218 (327)
.-++.|+.+||++|++....|.+. ++.+-.+|++.+. .....+..+...+|+++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence 457779999999999998877654 3556667776521 11223346888999884
No 157
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.27 E-value=0.012 Score=49.13 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDK 222 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe 222 (327)
-++.|+.+||++|+.++..|.+.. +.+-.+|++.+.++ ..+.++..++|+| |.+|+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence 467799999999999988887653 45677888765543 2234566778877 55665
No 158
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.017 Score=48.06 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=43.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE----EeechH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK----LFGGLV 228 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe----~IGG~d 228 (327)
|+-|+.+||+-|+.+.-.+.++. +.|-.+|+++ -.++..-.+...+|++. .||+ ++|+..
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 44488899999999999998774 4466788886 33455667889999984 4675 455543
No 159
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.24 E-value=0.013 Score=45.88 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=38.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF 224 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I 224 (327)
-++.|+.+||+.|+.....|++. .+.+..+|.+.+. .+.+..+..++|+++ -+|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcCCCcCCEEEEEeCCCee
Confidence 46678899999999887766433 2456666766544 344556788999875 466533
No 160
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.17 E-value=0.024 Score=52.98 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=41.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF 224 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I 224 (327)
-++.|+.+||+.|++....+++. + +.+..+|++.++ ++.+.++..++|+++ -+|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence 36778899999999998887654 2 445566666543 466667888999874 477755
No 161
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.14 E-value=0.014 Score=49.47 Aligned_cols=76 Identities=9% Similarity=0.172 Sum_probs=49.2
Q ss_pred CcEEEEEcC-CCh--hHH----------HHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeech
Q 039225 163 GRISFFSRS-NCR--DCT----------AVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGL 227 (327)
Q Consensus 163 ~kVvLYsk~-~Cp--~C~----------~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~ 227 (327)
..|++|+.+ ||+ +|+ .+.++|+..++.+..+|++.+++ |...+|..++|+| |.||+.+. +
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPTl~lfk~G~~v~-~ 102 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDSIYVFKDDEVIE-Y 102 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccEEEEEECCEEEE-e
Confidence 356666655 554 597 23445556689999999997754 6667888999998 67998664 4
Q ss_pred HHHHHhhhcCchHHHHHHh
Q 039225 228 VALNSLRNSGTFDERFREM 246 (327)
Q Consensus 228 deL~~L~esGeL~~~Lk~~ 246 (327)
...+ ....|.++|+.+
T Consensus 103 ~G~~---~~~~l~~~l~~~ 118 (120)
T cd03065 103 DGEF---AADTLVEFLLDL 118 (120)
T ss_pred eCCC---CHHHHHHHHHHH
Confidence 3322 223455565543
No 162
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.12 E-value=0.013 Score=48.98 Aligned_cols=58 Identities=16% Similarity=0.386 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHHhCCC--CccEEE-e--CCEEee
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRRTGSS--QVPQVF-L--NDKLFG 225 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~ltG~~--tVPqIF-I--nGe~IG 225 (327)
++.|+.+||++|+.....+.+ .+..|..+|++.+.+... +..+.. .+|+++ + +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEECCCCCCch
Confidence 555889999999999877766 344688889987653221 122332 489885 4 566544
No 163
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=96.11 E-value=0.0063 Score=49.00 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCcccccc-ccceeccCCcchhHHHHHHHhccc-cChhhh
Q 039225 276 MLLSVKLLRQRLPIQDRL-IKLKIVKNCFSGSEMVDVLTHHFK-CDRMKV 323 (327)
Q Consensus 276 la~lV~~l~~~~~Ikdr~-~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~A 323 (327)
+.+|+.+|-+...+.+|+ --+-.|.|||+|+|+|+||+++-. .+++.|
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~~s~~~a 51 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENMPEKDLDAA 51 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcCCCCCHHHH
Confidence 567888887776666655 456689999999999999999987 555544
No 164
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.07 E-value=0.0069 Score=57.95 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=40.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFI 219 (327)
..++.|+.+||++|+....+|+ ++|+.+..++++.... .-..+.+..|...+|.+|+
T Consensus 168 ~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 168 SGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred eEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 4566688999999998877765 4577777778775321 0123556678999999974
No 165
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.05 E-value=0.017 Score=46.25 Aligned_cols=51 Identities=14% Similarity=0.399 Sum_probs=35.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-------C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-------G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-------g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
++.|+.+||+.|++....|+++ + +.+..+|++..+ .+.+..+..++|++++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcCCccccEEEE
Confidence 5558889999999887666542 2 344556666544 3555678889999843
No 166
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.03 E-value=0.013 Score=45.96 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=39.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF 224 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I 224 (327)
.-++.|+.+||++|++....+.+. ++.+..+|++.+ ....+....|..++|+++ -+|+.+
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCCCccccEEEEEeCCCee
Confidence 346779999999999987555432 245666777752 123455566888899874 355533
No 167
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.03 E-value=0.018 Score=44.90 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=36.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc----C----CceEEEEcCC-ChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR----G----LKFVEINVDV-FPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el----g----V~y~eiDVd~-d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-++.|+.+||+.|++....+.+. . +.+..+|.+. .+ .+.+..+..++|.+++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCCCCcCEEEE
Confidence 347779999999999887777542 2 4455666665 33 3555567889999864
No 168
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.00 E-value=0.014 Score=49.59 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=37.7
Q ss_pred EEEEEc-------CCChhHHHHHHHHH----Hc--CCceEEEEcCCChh---HHHHHHHHhCCC-CccEEEe
Q 039225 165 ISFFSR-------SNCRDCTAVRRFFK----QR--GLKFVEINVDVFPP---REKELIRRTGSS-QVPQVFL 219 (327)
Q Consensus 165 VvLYsk-------~~Cp~C~~ak~iL~----el--gV~y~eiDVd~d~e---~~~eL~~ltG~~-tVPqIFI 219 (327)
|+.|+. +||+.|+.+..+|+ ++ ++.|..+|++..+. ...++....+.. ++|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 555788 89999998876664 33 36788888876431 123555555666 8999864
No 169
>PLN02378 glutathione S-transferase DHAR1
Probab=95.96 E-value=0.02 Score=51.93 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
..||+|.+|+-+|.+.|++|+.+.|+... ...++.+++-..+||++..||..|.....|...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence 45999999999999999999877776532 223577788889999999998877666655544
No 170
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.95 E-value=0.022 Score=51.89 Aligned_cols=58 Identities=14% Similarity=0.307 Sum_probs=42.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVA 229 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~de 229 (327)
|+-|+.+||+.|+.+...|+.+ .+.|..+|++. ....++...+|+| |.||+.++-+..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~i~~lPTlliyk~G~~v~~ivG 170 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYPDKNLPTILVYRNGDIVKQFIG 170 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCCCCCCCEEEEEECCEEEEEEeC
Confidence 4448889999999999888766 35677777762 1345688899988 568986654433
No 171
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.91 E-value=0.016 Score=51.53 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=54.4
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
||....|++|.+++-+|.++|++|+.+.++.. .....++.+++-..+||.+..||..+.....|....
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence 78888899999999999999999998888741 222346777788899999999998887777665543
No 172
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.88 E-value=0.032 Score=47.31 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=40.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF 224 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I 224 (327)
+-|+.+||+.|+.+-.+|.++. +.+-.+|+++-++ +.+.++....|+. |.||+|+
T Consensus 19 VdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----va~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 19 LRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----YTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH----HHHhcCceeCcEEEEEECCcEE
Confidence 3399999999999988888763 4566778886655 4455666667765 6789987
No 173
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.85 E-value=0.029 Score=51.05 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHHH----HHHHHHcCCceEEEEcCCCh-----h----HHHHHHHHhCC--CCccEEEe---CCE
Q 039225 165 ISFFSRSNCRDCTAV----RRFFKQRGLKFVEINVDVFP-----P----REKELIRRTGS--SQVPQVFL---NDK 222 (327)
Q Consensus 165 VvLYsk~~Cp~C~~a----k~iL~elgV~y~eiDVd~d~-----e----~~~eL~~ltG~--~tVPqIFI---nGe 222 (327)
+++|+.+|||+|++. +++-+++|+.+.-++++... - -...+.+.+|. ..+|..|+ +|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 889999999999998 55556678888777777541 1 12345555663 68999875 564
No 174
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.039 Score=52.12 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=56.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHhh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+.|.||+.-.|||..+++-.|+..||+|+.++++... .-+-|.+.. -+..||++..||+.|+-.-.+.+..
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYi 79 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYI 79 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHH
Confidence 5699999999999999999999999999988887643 122344444 5688999999999987766665543
No 175
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.73 E-value=0.024 Score=48.31 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=41.3
Q ss_pred cEEE-EEcCCChhHHHHHH-HHHH------c--CCceEEEEcCCChhHHHHHH----HHhCCCCccEEEe---CCEEeec
Q 039225 164 RISF-FSRSNCRDCTAVRR-FFKQ------R--GLKFVEINVDVFPPREKELI----RRTGSSQVPQVFL---NDKLFGG 226 (327)
Q Consensus 164 kVvL-Ysk~~Cp~C~~ak~-iL~e------l--gV~y~eiDVd~d~e~~~eL~----~ltG~~tVPqIFI---nGe~IGG 226 (327)
+|+| |+..||++|+.+.+ .|.. + +.-+..+|++..++..+.+. .++|...+|.+++ +|+.+.+
T Consensus 17 pVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 17 PIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred eEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEee
Confidence 3554 77899999998854 3332 2 34456677776666544332 2457888999865 6777754
Q ss_pred hH
Q 039225 227 LV 228 (327)
Q Consensus 227 ~d 228 (327)
..
T Consensus 97 ~~ 98 (124)
T cd02955 97 GT 98 (124)
T ss_pred ee
Confidence 43
No 176
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.71 E-value=0.0057 Score=52.38 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=36.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEee
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLFG 225 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~IG 225 (327)
.+|++++-+|||+|....-+|.+. ++++..+-.+.+.++.+.+.. .|.+++|+++| +|+.+|
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEEE-TT--EEE
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEEEcCCCCEeE
Confidence 479999999999999887666543 566766666655555444443 67899999965 345444
No 177
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.63 E-value=0.051 Score=50.76 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHc---CCceEEE--EcC-CChh-----------------------------------
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQR---GLKFVEI--NVD-VFPP----------------------------------- 200 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~ei--DVd-~d~e----------------------------------- 200 (327)
+..|++|+-+.||||+++...|.++ ++.+..+ .+. .++.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 4569999999999999998888775 3544333 221 1110
Q ss_pred --HHHHHHHHhCCCCccEEEe-CCEEeechHHHH
Q 039225 201 --REKELIRRTGSSQVPQVFL-NDKLFGGLVALN 231 (327)
Q Consensus 201 --~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~ 231 (327)
...++.+..|...+|.|++ ||+.+.|+....
T Consensus 188 v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~ 221 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIVLSNGTLVPGYQGPK 221 (232)
T ss_pred HHHhHHHHHHcCCccccEEEEcCCeEeeCCCCHH
Confidence 0011222246788999998 999999975443
No 178
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=95.56 E-value=0.036 Score=52.82 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=49.0
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 170 RSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 170 k~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
...||+|.+++-+|.++|++|+.+.|+... ..+++.+++-..+||++..+|..+.....|.+.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence 345999999999999999999987776532 234566777778999999999877766665554
No 179
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.51 E-value=0.035 Score=43.30 Aligned_cols=52 Identities=10% Similarity=0.283 Sum_probs=34.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcC--------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRG--------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elg--------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-++.|+.+||++|+.....|.+.. +.+..+|.+.. ++....+..++|++++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEEE
Confidence 3466789999999999887775442 44556666643 2333345588998854
No 180
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.41 E-value=0.036 Score=48.55 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=37.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCC-CccEE-Ee-CCE
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSS-QVPQV-FL-NDK 222 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~-tVPqI-FI-nGe 222 (327)
|+-|+.+||+.|+.+-.+|.++. +.+-.+||++.++ +...++.. ..|.+ |+ ||+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d----la~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD----FNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH----HHHHcCccCCCcEEEEEECCe
Confidence 34499999999999998887663 3457788887765 44445555 44566 44 555
No 181
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.37 E-value=0.04 Score=45.46 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC---------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRG---------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elg---------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
-++.|+.+||+.|+.....|++.. +.+..+|.+.+. ..++.+..+...+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 456688999999999887775432 334455544322 235666678899998854
No 182
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.20 E-value=0.022 Score=52.78 Aligned_cols=58 Identities=26% Similarity=0.520 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCC-----hh--HHHHHHHHhCCCCccEEEe
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVF-----PP--REKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d-----~e--~~~eL~~ltG~~tVPqIFI 219 (327)
...+++|+.++|++|.....+|+ ++|+.+..|++|.. +. .-..+.+..|...+|.+|+
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 45789999999999998877764 56888888888742 11 1234556678899999986
No 183
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.19 E-value=0.095 Score=40.36 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=48.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHH--HhCCCCccEEEeCCEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIR--RTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~--ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
.++|..+..+-|.+++-+|.+.|++|+.+.++..++.. ++.. ..-..+||.+.+||..+....-+...
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 56899888889999999999999999988887533221 1111 11246899999999877666555543
No 184
>PLN02395 glutathione S-transferase
Probab=95.07 E-value=0.097 Score=46.72 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=53.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
.++||...+| .+.+++-+|.++|++|+.+.|+.. .....++.+++-..+||++..+|..+.....|.+..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4789987765 489999999999999998887653 223356777888899999998887777776665543
No 185
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.98 E-value=0.11 Score=42.96 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChh--------------------HHHHHHHHhCCCCcc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPP--------------------REKELIRRTGSSQVP 215 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e--------------------~~~eL~~ltG~~tVP 215 (327)
++.|+.+||+.|++....|.+. ++.+..++++.+.+ ....+.+.+|...+|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 101 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIP 101 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCC
Confidence 4457789999999876666432 34555566654432 123455667888899
Q ss_pred EEEe---CCEEe
Q 039225 216 QVFL---NDKLF 224 (327)
Q Consensus 216 qIFI---nGe~I 224 (327)
.+|+ +|+.+
T Consensus 102 ~~~lid~~G~i~ 113 (131)
T cd03009 102 TLIILDADGEVV 113 (131)
T ss_pred EEEEECCCCCEE
Confidence 8864 45543
No 186
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.072 Score=47.68 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=52.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCE-EeechHHHH
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLNDK-LFGGLVALN 231 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe-~IGG~deL~ 231 (327)
++|..+.+|+|.+++-.|.++|++|+.+.|+... ....++..++-...||++..+|- .+-....|.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~ 69 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAIL 69 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHH
Confidence 5788888899999999999999999998888764 45567888888899999998874 444444443
No 187
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.82 E-value=0.11 Score=39.21 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChh-----------------------HHH-----HHHHHhC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPP-----------------------REK-----ELIRRTG 210 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e-----------------------~~~-----eL~~ltG 210 (327)
|++|+...||+|..+...|++. ++.+..+.+..... +.. .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5689999999999999888775 34555555433221 111 1223357
Q ss_pred CCCccEEEeCC
Q 039225 211 SSQVPQVFLND 221 (327)
Q Consensus 211 ~~tVPqIFInG 221 (327)
...+|.++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 78999999999
No 188
>PTZ00062 glutaredoxin; Provisional
Probab=94.68 E-value=0.15 Score=47.15 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=38.5
Q ss_pred CcEEE-EEcCCChhHHHHHHHHHHcCC---ceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechH
Q 039225 163 GRISF-FSRSNCRDCTAVRRFFKQRGL---KFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLV 228 (327)
Q Consensus 163 ~kVvL-Ysk~~Cp~C~~ak~iL~elgV---~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~d 228 (327)
+.+++ |+.+||+.|+.+...|.++-- .+..+.|+.+ ++...||.+ |-||+.|+.++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g~~i~r~~ 79 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNSQLINSLE 79 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECCEEEeeee
Confidence 44555 447999999999999887743 2444445433 677889976 45888877554
No 189
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=94.68 E-value=0.14 Score=42.67 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=37.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChh---------------------HHHHHHHHhCCCCc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPP---------------------REKELIRRTGSSQV 214 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e---------------------~~~eL~~ltG~~tV 214 (327)
++.|+.+||+.|+.....|+++ ++.+..++++...+ ....+.+.+|...+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 3447789999999876665432 34555566665431 22355566677888
Q ss_pred cEEE-eC--CEEe
Q 039225 215 PQVF-LN--DKLF 224 (327)
Q Consensus 215 PqIF-In--Ge~I 224 (327)
|.++ || |+.+
T Consensus 101 Pt~~lid~~G~iv 113 (132)
T cd02964 101 PTLVVLKPDGDVV 113 (132)
T ss_pred CEEEEECCCCCEE
Confidence 9887 54 5544
No 190
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=94.46 E-value=0.2 Score=46.39 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=37.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC----CceEEEEcC-------CCh-------hHHHHHHHHhCC--CCccEEEeCCE-E
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVD-------VFP-------PREKELIRRTGS--SQVPQVFLNDK-L 223 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd-------~d~-------e~~~eL~~ltG~--~tVPqIFInGe-~ 223 (327)
|.||+..+|+.|--|-++|.++. |-.--+.|+ +|+ +.+..+.+..|. ...||++|||. +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 78999999999999999998763 221112221 122 355556665554 45699999996 6
Q ss_pred eechH
Q 039225 224 FGGLV 228 (327)
Q Consensus 224 IGG~d 228 (327)
.+|.+
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 67775
No 191
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.44 E-value=0.29 Score=42.96 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.1
Q ss_pred EEEEcCCChhHHHHHHHHHH
Q 039225 166 SFFSRSNCRDCTAVRRFFKQ 185 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~e 185 (327)
+-|+.+|||.|++....|.+
T Consensus 30 L~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 30 LFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEECCCChhHHHHHHHHHH
Confidence 33778999999998877754
No 192
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.39 E-value=0.12 Score=45.87 Aligned_cols=64 Identities=8% Similarity=0.148 Sum_probs=48.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHH
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVAL 230 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL 230 (327)
++|....|+++++++-+|..+|++|+.++++.... ..++.+++...+||++.. +|..+-....|
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHH
Confidence 58999999999999999999999999988875321 234555677889999985 56544444433
No 193
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.15 E-value=0.18 Score=44.44 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=53.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC----CCCccEEEeCCEEeech---HHHHHhhh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG----SSQVPQVFLNDKLFGGL---VALNSLRN 235 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG----~~tVPqIFInGe~IGG~---deL~~L~e 235 (327)
-.+++|..++|.=|..-.+.|+..|+++.....+.... +++..| ..+.=+..|||.+|-|. +++..|.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~a----lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLA----LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHH----HHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 45889999999999999999999999998888774333 444444 35777999999999886 34544444
Q ss_pred c
Q 039225 236 S 236 (327)
Q Consensus 236 s 236 (327)
+
T Consensus 102 ~ 102 (149)
T COG3019 102 E 102 (149)
T ss_pred C
Confidence 3
No 194
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.07 E-value=0.19 Score=44.22 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=38.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCChh---------HHHHHHHHh---CCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVFPP---------REKELIRRT---GSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d~e---------~~~eL~~lt---G~~tVPqIFI 219 (327)
..++.|+.+||++|++..-.|+ ++++.+.-++++.... ....+...+ |...+|+.|+
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 4588899999999998877765 4567777777765320 011223344 5678899874
No 195
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.03 E-value=0.23 Score=44.55 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHH--cCCceEEE
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQ--RGLKFVEI 193 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~e--lgV~y~ei 193 (327)
.+..|++|+-+.||||+++...+.+ .++.+..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEE
Confidence 3457999999999999999988874 34444333
No 196
>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins. Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.
Probab=94.01 E-value=0.066 Score=42.85 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhh
Q 039225 276 MLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRF 325 (327)
Q Consensus 276 la~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~ 325 (327)
+..++..+++....++|...=..|++.|+|+|+|+-|..--. .+|.=|+.
T Consensus 2 LS~VA~~fr~~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~t~DRnlALl 52 (82)
T cd04435 2 LSRVALQLRDKIPLGDHTKDGITYRNSFTGKDAVTTIQGIIRTSDRNLALL 52 (82)
T ss_pred hHHHHHHHHHhccccccccCCeecCcccCcHHHHHHHHHHHhcccHHHHHH
Confidence 456788889998999998877889999999999999886554 66666643
No 197
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.97 E-value=0.24 Score=44.50 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=49.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-----CCE--EeechHHHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-----NDK--LFGGLVALNS 232 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-----nGe--~IGG~deL~~ 232 (327)
++||..+ +++|.+++-+|.++|++|+.++|+.. .....++.+++-...||++.. ||+ .+-...-|.+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~ 77 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILL 77 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence 5688876 69999999999999999998877643 233456778888899999987 342 3555544444
No 198
>PTZ00102 disulphide isomerase; Provisional
Probab=93.95 E-value=0.23 Score=49.79 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=35.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcC--------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRG--------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elg--------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-++.|+.+||++|++....|.+.. +.+..+|.+.+.. +....+.+.+|++++
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PLEEFSWSAFPTILF 437 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----chhcCCCcccCeEEE
Confidence 3466688899999999988886542 3455667665443 233456778898853
No 199
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.89 E-value=0.32 Score=37.10 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=49.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCC-CCccEEEeC-CEEeechHHHHHh
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGS-SQVPQVFLN-DKLFGGLVALNSL 233 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~-~tVPqIFIn-Ge~IGG~deL~~L 233 (327)
+.+|..++ .|..++-+|...|++|+.+.++. .....+++.+..-. ..+|.+..+ |..+-....|...
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 56677666 88999999999999998877764 34444777777777 899999999 8888776655543
No 200
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.88 E-value=0.14 Score=40.16 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=38.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCC--CccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSS--QVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~--tVPqIFI 219 (327)
-+++|+.+||+.|..++..|++.. +.|..+|++..+. +.+..|.. ++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence 467788899999999999987642 4566777765433 55556776 8999965
No 201
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.37 Score=45.11 Aligned_cols=59 Identities=12% Similarity=0.298 Sum_probs=48.1
Q ss_pred CCChhHHHHHHHHHHcCCce--EEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225 171 SNCRDCTAVRRFFKQRGLKF--VEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y--~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
..||+|+++-..|...+++| +.+|+..-++ .++.++....+|.|-+||+.+-..+.|.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~ 79 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEE 79 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHH
Confidence 46999999999999999886 5566665554 67888999999999999998877776543
No 202
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=93.56 E-value=0.26 Score=37.85 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
+.+|+|-++..+|+-.|++|+.+... ++. .+....+|.|..+|+.|+|+..+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 35799999999999999999765333 222 2234569999999999999998887543
No 203
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=93.42 E-value=0.22 Score=51.50 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=38.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LND 221 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InG 221 (327)
-++.|+.+||++|+.+...|.++ ++.+..+|++.+.. ......++..++|+|+ .+|
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECC
Confidence 36669999999999998887554 35677788886532 1223446778899884 455
No 204
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=93.35 E-value=0.18 Score=38.88 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=29.4
Q ss_pred cEEEEEcCCChhHHHHHHHH-HH--------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRSNCRDCTAVRRFF-KQ--------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL-~e--------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
-++.|+.+||++|+...+.+ .. .++-+..+|++.... ...+.. ..+|.++|
T Consensus 20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NAQFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HHHHHH----CSSSEEEE
T ss_pred EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hHHhCC----ccCCEEEE
Confidence 35567889999999987665 21 233445556543222 112222 33899875
No 205
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=93.27 E-value=0.2 Score=39.13 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR 234 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~ 234 (327)
+..+.|.++..+|+..|++|+.+++..... ......||.|.+||+.|++..-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 356788999999999999999886542111 122367999999999999988776654
No 206
>PRK11752 putative S-transferase; Provisional
Probab=93.00 E-value=0.55 Score=44.29 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=52.1
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCC----EEeechH
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLND----KLFGGLV 228 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInG----e~IGG~d 228 (327)
..+.++||+.+ +++|.+++-+|.++ |++|+.+.|+. ......++.++.-..+||++..++ ..+....
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 44579999964 99999999999997 88888766653 233445677787788999998753 4555555
Q ss_pred HHHH
Q 039225 229 ALNS 232 (327)
Q Consensus 229 eL~~ 232 (327)
.|..
T Consensus 120 AIl~ 123 (264)
T PRK11752 120 AILL 123 (264)
T ss_pred HHHH
Confidence 5554
No 207
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=92.85 E-value=0.3 Score=51.40 Aligned_cols=55 Identities=11% Similarity=0.336 Sum_probs=39.3
Q ss_pred EEEEEcCCChhHHHHHHH-H------HH-cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 165 ISFFSRSNCRDCTAVRRF-F------KQ-RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~i-L------~e-lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
++.|+.+||+.|+..+.. + +. .++.+..+|++.+.+..+++.+..|...+|++++
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~ 540 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILF 540 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEE
Confidence 445888999999987654 2 12 2456777888876544456777789999999864
No 208
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.77 E-value=0.61 Score=38.60 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQ 185 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~e 185 (327)
+..|++|+-.+||+|.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 456888999999999998766655
No 209
>PLN02309 5'-adenylylsulfate reductase
Probab=92.68 E-value=0.26 Score=50.82 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=37.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcC-CChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVD-VFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-++.|+.+||++|+.+...|.++ ++.+-.+|++ .+.++ ..+..+..++|+|++
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~ 428 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL 428 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence 457779999999999998887654 3556667766 32221 223467788999843
No 210
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=92.57 E-value=0.13 Score=41.64 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=18.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el 186 (327)
.-|+.|+.+||+.|......|..+
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHH
Confidence 346678889999999987666654
No 211
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=92.47 E-value=0.53 Score=37.57 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=31.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC----CceEEEEc-CCChhHHHHHHHHhCCCCccEEE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRG----LKFVEINV-DVFPPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDV-d~d~e~~~eL~~ltG~~tVPqIF 218 (327)
-|+.|+.+||+.|++....|+++. -.+..+-+ +.+.+..+.+.+..+...+|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 356688899999998877775532 12222222 22333333444445555677664
No 212
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=92.35 E-value=0.77 Score=37.57 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVD 196 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd 196 (327)
-|+.|+.+||+.|.+....|+++ ++.+..++++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 36668889999999887777554 3555555544
No 213
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=92.30 E-value=0.68 Score=41.52 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=22.5
Q ss_pred cEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcC
Q 039225 164 RISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVD 196 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd 196 (327)
-|+.|+.+|||.|++....+ ++.++.+.-+..+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~ 113 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG 113 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 46668889999999875544 4446666666543
No 214
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.15 Score=46.88 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=51.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR 234 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~ 234 (327)
.+|...-||||.+|+-++.-++++++..-+..|.+.. =.++.|...||.+.- +|++.+..-|+....
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET--PIRMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccC--hhhhhcccccceEEccccccchhhhHHHHHH
Confidence 3788899999999999999999999877776654422 223569999999975 578888776766543
No 215
>PTZ00057 glutathione s-transferase; Provisional
Probab=92.18 E-value=0.69 Score=41.44 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=51.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh-H--HHHHH--HHhCCCCccEEEeCCEEeechHHHHH
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP-R--EKELI--RRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e-~--~~eL~--~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
.+++||+.+..+.|..++-+|...|++|+.+.++...+ . .+++. ..+-...||.+.+||..+....-+..
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 34889998888899999999999999999998854221 1 11112 24567899999999987776665554
No 216
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.43 Score=44.90 Aligned_cols=69 Identities=19% Similarity=0.387 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCc--eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee----chHHHHHhh
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGLK--FVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG----GLVALNSLR 234 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~--y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG----G~deL~~L~ 234 (327)
...|.||+.-+|-.|...-+.|++.|+- ++.+|-...+.. .+ ..+.-+||.||+||+.+- ..+++..+.
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~--~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AF--EKGVISVPSVFIDGELVYADPVDPEEIESIL 84 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hh--hcceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence 4579999999999999999999999874 666776654432 22 236789999999999773 345666553
No 217
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=92.05 E-value=0.4 Score=47.30 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=39.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-------cC--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEE
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQ-------RG--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKL 223 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~e-------lg--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~ 223 (327)
-++.|+.+||++|++....+.+ .+ +.+..+|.+.+. ++.+..|..++|+++ -+|+.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEEEeCCcc
Confidence 3677999999999988755542 33 566777777553 455667888999884 45654
No 218
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.05 E-value=0.74 Score=35.25 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=24.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF 198 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d 198 (327)
-++.|+.+||+.|.+....|.++ ++.+..++++.+
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 46678889999999776555433 456777777764
No 219
>PTZ00102 disulphide isomerase; Provisional
Probab=91.89 E-value=0.41 Score=47.95 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=38.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH-------c--CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQ-------R--GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK 222 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~e-------l--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe 222 (327)
.-++.|+.+||++|++....+.+ . ++.+..+|.+.+. ++.+..|..++|+++ -+|+
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcCCCcccEEEEEECCc
Confidence 45777999999999988654432 2 2556677776554 355566788899884 3554
No 220
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=91.84 E-value=0.98 Score=34.94 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el 186 (327)
++.|+.+||+.|.+....|.++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l 26 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKEL 26 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 5668889999999987777543
No 221
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=91.41 E-value=0.69 Score=39.67 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=23.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF 198 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d 198 (327)
-++.|+.+||++|++....|.+. ++.+..++.+..
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45667889999999865555322 355666666544
No 222
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.91 E-value=1.6 Score=37.51 Aligned_cols=54 Identities=17% Similarity=0.380 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEeCCEEe--echHHHH
Q 039225 177 TAVRRFFKQRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFLNDKLF--GGLVALN 231 (327)
Q Consensus 177 ~~ak~iL~elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFInGe~I--GG~deL~ 231 (327)
..+.++|++.|+.+..+|+.++|. +.+ +.+..|...+|.++|||+.+ |.+=...
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~-~L~~~G~e~LPitlVdGeiv~~G~YPt~e 92 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQ-LLQTEGAEALPITLVDGEIVKTGRYPTNE 92 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHH-HHHHH-GGG-SEEEETTEEEEESS---HH
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHH-HHHHcCcccCCEEEECCEEEEecCCCCHH
Confidence 466788999999999999999864 333 33346889999999999966 6554433
No 223
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=90.84 E-value=0.99 Score=40.18 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=26.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHH---cCCceEEEEcCCChh
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQ---RGLKFVEINVDVFPP 200 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~e---lgV~y~eiDVd~d~e 200 (327)
-|+.|+.+||+.|++....|.+ .++.+.-++++.+.+
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 3555888999999987666554 467777777665443
No 224
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=90.74 E-value=1.2 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDV 197 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~ 197 (327)
-++.|+.+||+.|++....|+++ ++.+.-++++.
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 35557889999999886666544 66666666643
No 225
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.84 Score=41.26 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=41.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH------c---CCceEEEEcCCC------------hhHHHHHHHHhCCCCccEEEe-C
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQ------R---GLKFVEINVDVF------------PPREKELIRRTGSSQVPQVFL-N 220 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~e------l---gV~y~eiDVd~d------------~e~~~eL~~ltG~~tVPqIFI-n 220 (327)
--+.||..++|+||.+.|+-+.. + ++.+.++++... ....++|.+..+.++.|.+++ +
T Consensus 44 ylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfd 123 (182)
T COG2143 44 YLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFD 123 (182)
T ss_pred EEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEc
Confidence 34788999999999998765532 1 122344555332 123458888899999999865 3
Q ss_pred --CEEee
Q 039225 221 --DKLFG 225 (327)
Q Consensus 221 --Ge~IG 225 (327)
|+.|+
T Consensus 124 k~Gk~Il 130 (182)
T COG2143 124 KTGKTIL 130 (182)
T ss_pred CCCCEEE
Confidence 45555
No 226
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=90.47 E-value=1.7 Score=33.74 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=43.6
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-h-H-HHH-HHHH----hCCCCccEEEeCCEEeechHHHHHh
Q 039225 167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-P-R-EKE-LIRR----TGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e-~-~~e-L~~l----tG~~tVPqIFInGe~IGG~deL~~L 233 (327)
+|+...-+.|.+++-+|...|++|+.+.|+... + . ..+ +... .-..+||.+..||..+.-..-|...
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 555555567889999999999999888876532 1 1 112 1111 1346999999888776655555443
No 227
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=90.34 E-value=0.63 Score=45.01 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=49.8
Q ss_pred CCcEEEEEcC-------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHH
Q 039225 162 KGRISFFSRS-------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALN 231 (327)
Q Consensus 162 ~~kVvLYsk~-------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~ 231 (327)
+..|-+|.-+ -.|||-++..+|+-.+++|+.++-.. ..++...++|-|-.||++|.+.+-+.
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEeCCeeccccHHHH
Confidence 4556677642 35899999999999999999988773 23566789999999999999988654
No 228
>PRK10542 glutathionine S-transferase; Provisional
Probab=89.65 E-value=0.89 Score=39.97 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=46.7
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225 166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL 233 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L 233 (327)
+||+..+ +.+.+++-+|.++|++|+.+.|+... ...+++.+++-...||++.+ ||..|-....|.+.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence 4666543 34677888999999999888776532 12356777877899999987 66666666555543
No 229
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=89.54 E-value=1.8 Score=36.16 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=31.1
Q ss_pred cEEEEEcC-CChhHHHHHHHHH-------HcCCceEEEEcCCChhHHHHHHH
Q 039225 164 RISFFSRS-NCRDCTAVRRFFK-------QRGLKFVEINVDVFPPREKELIR 207 (327)
Q Consensus 164 kVvLYsk~-~Cp~C~~ak~iL~-------elgV~y~eiDVd~d~e~~~eL~~ 207 (327)
-|+.|+.+ |||.|......|+ ..++.+.-+..+.++..++.+.+
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 35567778 9999997764443 34678888888887776655555
No 230
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=89.28 E-value=2.1 Score=36.23 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=41.6
Q ss_pred CcEEEEEc--CCCh---hHHHHHHHHHHc--CCceEEEEcCCChh-HHHHHHHHhCCC--CccEE--EeCC
Q 039225 163 GRISFFSR--SNCR---DCTAVRRFFKQR--GLKFVEINVDVFPP-REKELIRRTGSS--QVPQV--FLND 221 (327)
Q Consensus 163 ~kVvLYsk--~~Cp---~C~~ak~iL~el--gV~y~eiDVd~d~e-~~~eL~~ltG~~--tVPqI--FInG 221 (327)
.-+|.|.. +||. .|++...-+.+. .|.+-.+|++...+ ...+|.+.+|.. .+|+| |.+|
T Consensus 20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 20 YSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred cEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 34667888 8998 888887665443 36678888864332 235688888988 89988 5566
No 231
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=89.15 E-value=1.2 Score=33.12 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=32.9
Q ss_pred EEcCCChhHHHHHHHHHHc------CCceEEEEcC-CChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225 168 FSRSNCRDCTAVRRFFKQR------GLKFVEINVD-VFPPREKELIRRTGSSQVPQVF--LNDK 222 (327)
Q Consensus 168 Ysk~~Cp~C~~ak~iL~el------gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIF--InGe 222 (327)
|+.+||++|+.+...|.+. .+.+..+|+. ...+....+.. ....+|.+. .+|+
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence 3699999999998777654 2567777775 44544444432 134456654 4443
No 232
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=89.12 E-value=0.96 Score=43.35 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcCCC--hh-----HHHHHHHHhCCCCccEEEe
Q 039225 162 KGRISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVDVF--PP-----REKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd~d--~e-----~~~eL~~ltG~~tVPqIFI 219 (327)
+..+++|+++.|++|.+.--+| +++|+.+.-+++|.. +. .-..+.+..|...+|.+|+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 4689999999999999987666 567898888888864 11 1123445567889999985
No 233
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.75 Score=42.41 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred cEEEE--EcCCChhHHHHHHHHHHcCCceEEEEcCCC-hhHHHHHHHHhCCCCccEEEeCCEEeechHHHH
Q 039225 164 RISFF--SRSNCRDCTAVRRFFKQRGLKFVEINVDVF-PPREKELIRRTGSSQVPQVFLNDKLFGGLVALN 231 (327)
Q Consensus 164 kVvLY--sk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~ 231 (327)
+-++| +.++|.+=.++--.|++...+|.-+|+-.. .+.-.+++++.-..+||.+.|||..+-..--+.
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII 75 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAII 75 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHH
Confidence 34455 468898866666566655556666676554 344557888888889999999998776554443
No 234
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=88.35 E-value=1.8 Score=42.76 Aligned_cols=51 Identities=8% Similarity=0.219 Sum_probs=35.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.-++.|+.+||+.|+.....+.++ ++.+-.+|++... +.. .+...+|++++
T Consensus 366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FEVEGFPTIKF 425 (462)
T ss_pred eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CCccccCEEEE
Confidence 346668899999999887777553 3456677776543 222 46678999865
No 235
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=87.22 E-value=2.3 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=17.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el 186 (327)
|+-|+.+||+.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 5558889999999987777544
No 236
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=87.02 E-value=1 Score=36.61 Aligned_cols=58 Identities=7% Similarity=0.297 Sum_probs=35.6
Q ss_pred EEE-EEcCCChhHHHHH-HHHHHcCC------ceEE--EEcCCChhHHHHHHHHhCCCCccEEE-e---CCEEe
Q 039225 165 ISF-FSRSNCRDCTAVR-RFFKQRGL------KFVE--INVDVFPPREKELIRRTGSSQVPQVF-L---NDKLF 224 (327)
Q Consensus 165 VvL-Ysk~~Cp~C~~ak-~iL~elgV------~y~e--iDVd~d~e~~~eL~~ltG~~tVPqIF-I---nGe~I 224 (327)
++| +..+||++|+... ..|.+-.| .|.. +|+.. ++. ..+...++...+|.++ + +|+.+
T Consensus 20 llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 20 LLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred EEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHhCccCCCeEEEEeCccCcEe
Confidence 444 5568999999874 35543322 2433 45543 233 4577778889999985 4 45544
No 237
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=2.3 Score=39.46 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=55.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
....+++-...+.|.-+|.+|.-.|++|++..+..... -.+++..+-..++|.+-|||..|.-.-.+...
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 44678888899999999999999999999999987653 23455556778999999999877666555443
No 238
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=86.68 E-value=0.94 Score=43.21 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=43.5
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCc-------e--EEEEc--CCC-------hhHHHHHHHHhCCC--CccEEEeC
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-------F--VEINV--DVF-------PPREKELIRRTGSS--QVPQVFLN 220 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-------y--~eiDV--d~d-------~e~~~eL~~ltG~~--tVPqIFIn 220 (327)
...-|.||+..+|..|--+-+.|.++.-. | +..|- -.| .+.+..+....|.+ ..||.+||
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 34568899999999999999999887422 1 11221 112 24444555555654 45999999
Q ss_pred CE-Eeech
Q 039225 221 DK-LFGGL 227 (327)
Q Consensus 221 Ge-~IGG~ 227 (327)
|+ +.-|.
T Consensus 121 Gr~~~~Ga 128 (261)
T COG5429 121 GRVHANGA 128 (261)
T ss_pred chhhhcCC
Confidence 96 45454
No 239
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=2.4 Score=39.24 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=56.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS 232 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~ 232 (327)
++++|+...-+.|+++.-.++.+|++|+.+.|+. ......++.++.-..+||.+.-+|-.+-....|..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHH
Confidence 4679999999999999999999999988875544 45666778888888999999999877766655543
No 240
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=85.76 E-value=2.4 Score=34.90 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=16.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el 186 (327)
-|+.|+.+||+.|.+....|+++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 35567889999999876555443
No 241
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=84.93 E-value=2.3 Score=40.58 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCC--hhH-----HHHHHHHhCCCCccEEEe
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVF--PPR-----EKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d--~e~-----~~eL~~ltG~~tVPqIFI 219 (327)
...+++|+.+.||||.+.-.+|+ .+|+.+.-+.+|.. +.+ -....+..|...+|.+|+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 46899999999999998866664 56888888888752 221 112334567789999985
No 242
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=2.1 Score=41.38 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=42.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCc-----eEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQRGLK-----FVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~elgV~-----y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG 225 (327)
-||=|+.+||+-|+++--+|..+.-. |-.+||++-. ....-+|....|+. |.||..|-
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~----~taa~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR----GTAATNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh----chhhhcCcccCceEEEEecCeEee
Confidence 36669999999999999999877443 5677777322 23445688889986 67998663
No 243
>PHA03075 glutaredoxin-like protein; Provisional
Probab=83.99 E-value=1.3 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCceEEE
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEI 193 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~ei 193 (327)
+..+++|.||.|+-|+.+..+|+.+.-+|+..
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDIL 33 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEE
Confidence 46689999999999999999998887666443
No 244
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=83.98 E-value=8.5 Score=36.39 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=22.2
Q ss_pred CcEEEEEcCCChhHHHHHHHH-------HHcCCceEEEEcC
Q 039225 163 GRISFFSRSNCRDCTAVRRFF-------KQRGLKFVEINVD 196 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL-------~elgV~y~eiDVd 196 (327)
.-|+.|+.+||+.|..-...| ++.|+.+.-++.+
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 345668899999998644333 3346666666653
No 245
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=82.51 E-value=5.4 Score=32.87 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred cEEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225 164 RISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 164 kVvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF 218 (327)
.|++|. ..|||.|..-...|.+ .|+.+.-+..+...... .+.+..+ .++|.+.
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~-~~~p~~~ 86 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF-LPFPVYA 86 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC-CCCeEEE
Confidence 345554 6899999986555443 46666666665433333 3333333 4577554
No 246
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=2.6 Score=44.06 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=38.4
Q ss_pred EEEEEcCCChhHHH-------HHHHHHHc--CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEE
Q 039225 165 ISFFSRSNCRDCTA-------VRRFFKQR--GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKL 223 (327)
Q Consensus 165 VvLYsk~~Cp~C~~-------ak~iL~el--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~ 223 (327)
.|-|+.+||.+|++ |-..|.+. .+..-.+|-... ..+...++.+.+|++ |.||+-
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEEEecCCc
Confidence 35699999999985 45566776 344555555533 457777888889987 678874
No 247
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=82.28 E-value=1.4 Score=37.52 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHH----Hc--CCceEEEEcCCChhHH---HHHHH--HhCCCCccEEEe
Q 039225 171 SNCRDCTAVRRFFK----QR--GLKFVEINVDVFPPRE---KELIR--RTGSSQVPQVFL 219 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~----el--gV~y~eiDVd~d~e~~---~eL~~--ltG~~tVPqIFI 219 (327)
+|||+|++|.-+++ .. +..+..+.|...++-+ ..++. ...-..||+|+-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 69999999985554 33 3456777775432211 13333 245578999973
No 248
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=80.17 E-value=6.9 Score=31.27 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=30.4
Q ss_pred cEEEEEcC-CChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISFFSRS-NCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvLYsk~-~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
.|+.|+.. ||+.|.....-|++ .|+.+.-+..+...+.++.+++ .+ ..+|.+.-
T Consensus 28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~-~~-~~~~~~~D 89 (124)
T PF00578_consen 28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE-YG-LPFPVLSD 89 (124)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH-HT-CSSEEEEE
T ss_pred EEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh-hc-cccccccC
Confidence 34455556 99999866544443 3566666666544444443433 33 45566554
No 249
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=79.64 E-value=5.1 Score=34.81 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=49.9
Q ss_pred EEEEEcC---CChhHHHHHHHHH----HcC---CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHH
Q 039225 165 ISFFSRS---NCRDCTAVRRFFK----QRG---LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNS 232 (327)
Q Consensus 165 VvLYsk~---~Cp~C~~ak~iL~----elg---V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~ 232 (327)
.++|... .+|.+..+--+|. +++ +.+-.+|++.++ +|...+|..++|++ |-||+.+|-...++.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~----~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE----AIGDRFGVFRFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH----HHHHHcCCccCCEEEEEECCEEEEEEeCcCC
Confidence 4444432 4666665544443 433 557778887654 47778899999998 559998876654432
Q ss_pred hhhcCchHHHHHHhhccC
Q 039225 233 LRNSGTFDERFREMLGRK 250 (327)
Q Consensus 233 L~esGeL~~~Lk~~~~~~ 250 (327)
..+|.++|++....+
T Consensus 113 ---k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 113 ---WAELINLMRGLVEPQ 127 (132)
T ss_pred ---HHHHHHHHHHHhcCc
Confidence 245667777766543
No 250
>smart00594 UAS UAS domain.
Probab=79.31 E-value=4.4 Score=33.65 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=35.2
Q ss_pred CcEEEEEcCCChhHHHHH-HHHHHcCC------ceE--EEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 163 GRISFFSRSNCRDCTAVR-RFFKQRGL------KFV--EINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak-~iL~elgV------~y~--eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
..++.+..+||++|.... .+|.+-.| .|. .+|+...+. ..+...++..++|.+.|
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSFPYVAI 92 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCCCEEEE
Confidence 445556678999999763 44543322 243 456654433 45777788899999964
No 251
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=79.21 E-value=9.2 Score=29.56 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHcCCc---eEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225 173 CRDCTAVRRFFKQRGLK---FVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR 234 (327)
Q Consensus 173 Cp~C~~ak~iL~elgV~---y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~ 234 (327)
-+.|-++..+|+-.+.+ |+.+-... +. ++-...+|.+.. +|+.+.|+.+|.+..
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 47899999999999999 76665552 32 344568999999 999999999998753
No 252
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=79.03 E-value=22 Score=35.59 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=38.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCC---------ceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGL---------KFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV---------~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I 224 (327)
.+-|+..||+|++..+-++.+..- .+..-.|+-+ ....|...+....+|++ |.||..+
T Consensus 17 fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--~e~~ia~ky~I~KyPTlKvfrnG~~~ 85 (375)
T KOG0912|consen 17 FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--KEDDIADKYHINKYPTLKVFRNGEMM 85 (375)
T ss_pred eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--hhhHHhhhhccccCceeeeeeccchh
Confidence 344889999999999999976532 2333344433 33456666666777775 7888644
No 253
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=77.50 E-value=1.6 Score=43.27 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=39.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEc----CC-ChhHHHHHHHHhCCCCccEE-EeCCEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINV----DV-FPPREKELIRRTGSSQVPQV-FLNDKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDV----d~-d~e~~~eL~~ltG~~tVPqI-FInGe~I 224 (327)
.+=|+.+||.+|++..-++++.|.+...++. .+ |-.....+....|...+|+| |+.|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee
Confidence 5668899999999999999888765433222 11 22222345555677888988 5555444
No 254
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=77.25 E-value=9.3 Score=32.57 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=20.0
Q ss_pred EEEEEcCCChhHHHHHHHH----HHc---CCceEEEEc
Q 039225 165 ISFFSRSNCRDCTAVRRFF----KQR---GLKFVEINV 195 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL----~el---gV~y~eiDV 195 (327)
|+.|+.+|||+|.+...-| +++ |+.+.-++.
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 5668899999998755433 333 455555553
No 255
>PTZ00056 glutathione peroxidase; Provisional
Probab=76.49 E-value=7.4 Score=35.35 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=19.6
Q ss_pred EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINV 195 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDV 195 (327)
|+.|+.+||+.|.+-...|++ .|+.+.-+++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 445788999999964433433 3565655554
No 256
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=76.44 E-value=25 Score=28.97 Aligned_cols=68 Identities=18% Similarity=0.424 Sum_probs=36.5
Q ss_pred EEEEcC-CChhH------HHHHHHHHHc--------CCceEEEEcCCChh--HHHHHH-HHh-CCCCccEEEeCCEEee-
Q 039225 166 SFFSRS-NCRDC------TAVRRFFKQR--------GLKFVEINVDVFPP--REKELI-RRT-GSSQVPQVFLNDKLFG- 225 (327)
Q Consensus 166 vLYsk~-~Cp~C------~~ak~iL~el--------gV~y~eiDVd~d~e--~~~eL~-~lt-G~~tVPqIFInGe~IG- 225 (327)
++|... -|..| +....||+.. .+.|+.+||...++ ..+++. ++. .-.-.|.|.|||+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 355553 35554 5556666532 34688999987543 233333 333 3466899999999997
Q ss_pred chHHHHHh
Q 039225 226 GLVALNSL 233 (327)
Q Consensus 226 G~deL~~L 233 (327)
|+-.|+..
T Consensus 81 Gnp~LK~I 88 (93)
T PF07315_consen 81 GNPQLKDI 88 (93)
T ss_dssp SS--HHHH
T ss_pred CCccHHHH
Confidence 66555544
No 257
>PTZ00256 glutathione peroxidase; Provisional
Probab=76.32 E-value=12 Score=33.14 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=28.8
Q ss_pred EEEEcCCChhHHHHHHHHH-------HcCCceEEEEcCC-------C-hhHHHHHHHHhCCCCccEE
Q 039225 166 SFFSRSNCRDCTAVRRFFK-------QRGLKFVEINVDV-------F-PPREKELIRRTGSSQVPQV 217 (327)
Q Consensus 166 vLYsk~~Cp~C~~ak~iL~-------elgV~y~eiDVd~-------d-~e~~~eL~~ltG~~tVPqI 217 (327)
++|+.+|||.|.+-...|+ +.|+.+.-++++. + .+.++.+++..| .++|.+
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~ 111 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLF 111 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCc
Confidence 3568899999997444443 3356666665431 1 233343443334 357876
No 258
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=76.18 E-value=16 Score=30.64 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCcEEEEEcCC-ChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCC-CccEEEe--CCEEee
Q 039225 162 KGRISFFSRSN-CRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSS-QVPQVFL--NDKLFG 225 (327)
Q Consensus 162 ~~kVvLYsk~~-Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~-tVPqIFI--nGe~IG 225 (327)
..+++||=-++ ||-+..|.+-|++. .+++-.+||-.+.++-+++++.+|.. .-||+++ ||+.+-
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 45677777654 99999998777644 28899999999999999999999864 4599854 888663
No 259
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=75.23 E-value=11 Score=30.94 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred EEEE-cCCChhHHHHHHH-------HHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE
Q 039225 166 SFFS-RSNCRDCTAVRRF-------FKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV 217 (327)
Q Consensus 166 vLYs-k~~Cp~C~~ak~i-------L~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI 217 (327)
+.|+ ..|||.|...... |.+.++.+.-+.++.....++.+++ .+ ..+|.+
T Consensus 28 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~-~~-~~~~~l 85 (140)
T cd03017 28 LYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK-YG-LPFPLL 85 (140)
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hC-CCceEE
Confidence 3344 4789999864333 3444666666666544444433333 34 346633
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.80 E-value=14 Score=42.01 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=16.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el 186 (327)
|+-|+.+||+.|++....|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4448889999999877666544
No 261
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=74.76 E-value=15 Score=33.04 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=30.0
Q ss_pred cEEE-EEcCCChhHHHHHH-HHHHcCC------ceE--EEEcCCChhHHHH----HHHHhCCCCccEEEe---CCEEeec
Q 039225 164 RISF-FSRSNCRDCTAVRR-FFKQRGL------KFV--EINVDVFPPREKE----LIRRTGSSQVPQVFL---NDKLFGG 226 (327)
Q Consensus 164 kVvL-Ysk~~Cp~C~~ak~-iL~elgV------~y~--eiDVd~d~e~~~e----L~~ltG~~tVPqIFI---nGe~IGG 226 (327)
.|.| .+.+||.+|+.+.+ .|.+..| .|. .+|.++.|++... .+.++|...+|...+ +|+.|.|
T Consensus 39 pIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 39 PIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp -EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred cEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 3444 45689999997653 4433322 233 3566665654333 344567888887654 6776643
No 262
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.67 E-value=8.5 Score=39.31 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=38.8
Q ss_pred cEEEEEcCCChhHHHHHHHHH---HcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 164 RISFFSRSNCRDCTAVRRFFK---QRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~---elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
...-|..-+|.-|-.+.+.|+ -++-.+...-|+. .-+++|.+. -+...||.||.||+.+|
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG-a~Fq~Evea-r~IMaVPtvflnGe~fg 181 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG-ALFQDEVEA-RNIMAVPTVFLNGEEFG 181 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc-hhhHhHHHh-ccceecceEEEcchhhc
Confidence 455677666655555555554 4454555555552 345566665 36789999999999876
No 263
>PLN02412 probable glutathione peroxidase
Probab=72.64 E-value=11 Score=32.93 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=29.3
Q ss_pred EEEEEcCCChhHHHHHHHHH-------HcCCceEEEEcCC------C--hhHHHHHHHHhCCCCccEEE
Q 039225 165 ISFFSRSNCRDCTAVRRFFK-------QRGLKFVEINVDV------F--PPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~-------elgV~y~eiDVd~------d--~e~~~eL~~ltG~~tVPqIF 218 (327)
|+.|+.+||+.|.+-...|+ +.|+.+.-++.+. + .+..+.+.+..| .++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 44477899999996433333 3355555555431 1 233444433334 5789875
No 264
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.29 E-value=5.7 Score=33.32 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=19.2
Q ss_pred hCCCCccEEEeCCEEeechHHHHHh
Q 039225 209 TGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 209 tG~~tVPqIFInGe~IGG~deL~~L 233 (327)
.|...+|.+||||+.+.|...+.++
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHHHH
T ss_pred cCCccccEEEECCEEeCCCCCHHHH
Confidence 4778999999999999876655544
No 265
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=71.92 E-value=6.9 Score=41.64 Aligned_cols=55 Identities=18% Similarity=0.390 Sum_probs=39.7
Q ss_pred cEEE-EEcCCChhHHHHHHHH--------HHcCCceEEEEcCCC-hhHHHHHHHHhCCCCccEEEe
Q 039225 164 RISF-FSRSNCRDCTAVRRFF--------KQRGLKFVEINVDVF-PPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 164 kVvL-Ysk~~Cp~C~~ak~iL--------~elgV~y~eiDVd~d-~e~~~eL~~ltG~~tVPqIFI 219 (327)
+|.+ |+..||--|+..++.. +-.++.+-+.|+..+ ++.++.| +..|.-.+|.+++
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL-k~~~~~G~P~~~f 540 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL-KRLGVFGVPTYLF 540 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH-HHcCCCCCCEEEE
Confidence 5555 9999999999876553 223566788899775 5555545 4579999999854
No 266
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=71.56 E-value=3.7 Score=38.84 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=20.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHH
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQ 185 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~e 185 (327)
.+..|++|+-+.||||++....+.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHH
Confidence 3456889999999999999776654
No 267
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=71.44 E-value=13 Score=33.34 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=25.4
Q ss_pred cCCcEEE--EEcCCChhHHHH----HHHHH---HcCCceEEEEcCCChh
Q 039225 161 IKGRISF--FSRSNCRDCTAV----RRFFK---QRGLKFVEINVDVFPP 200 (327)
Q Consensus 161 ~~~kVvL--Ysk~~Cp~C~~a----k~iL~---elgV~y~eiDVd~d~e 200 (327)
..++|+. |+..|||.|+.. +.+++ +.+-+++.+=|+.|.+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 3455554 456899999965 34433 3355688888877653
No 268
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=69.11 E-value=14 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=26.5
Q ss_pred EEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHHHHHHhCCCCccE
Q 039225 165 ISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKELIRRTGSSQVPQ 216 (327)
Q Consensus 165 VvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPq 216 (327)
|++|+ .+||+.|.+....|++ .|+.+.-+.++.....++ +.+..+ ..+|.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~-~~~~~~-~~~~~ 89 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA-WAEENG-LTFPL 89 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH-HHHhcC-CCceE
Confidence 33454 6899999966544433 356665565553333333 333334 34554
No 269
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=68.76 E-value=12 Score=31.90 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=14.1
Q ss_pred EEEEEcCCChhHHHHHHHHHH
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQ 185 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~e 185 (327)
|+.|+.+||+ |.+-...|++
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 4447789999 9986555544
No 270
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.67 E-value=13 Score=36.85 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.5
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
...-++.|+.+||++|.+....+.+. .-......|+ ...-..+.+.++...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd--~~~~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVD--CDEHKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeC--chhhHHHHHhcCCccCcEEEE
Confidence 34678899999999999887665543 2233344444 223345777788999999954
No 271
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=68.06 E-value=18 Score=29.47 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=28.0
Q ss_pred EEEEE-cCCChhHHHHHHHHH-------HcCCceEEEEcCCChhHHHHHHHHhCCCCccEE
Q 039225 165 ISFFS-RSNCRDCTAVRRFFK-------QRGLKFVEINVDVFPPREKELIRRTGSSQVPQV 217 (327)
Q Consensus 165 VvLYs-k~~Cp~C~~ak~iL~-------elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI 217 (327)
|+.|+ ..||+.|.....-|. ..++.+..+.++.....+ .+.+..+...+|.+
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~-~~~~~~~~~~~~~l 85 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHK-AWAEKEGGLNFPLL 85 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHhcccCCCceEE
Confidence 33344 469999997644443 346666666665333333 33333334556644
No 272
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=67.37 E-value=21 Score=28.78 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=48.0
Q ss_pred EEEcCCChhHHHHHHHHHHcCC--ceEEEEcCCChhHHHHHHHHhC-----CCCccEEEeCCE-EeechHHHHHhhhcCc
Q 039225 167 FFSRSNCRDCTAVRRFFKQRGL--KFVEINVDVFPPREKELIRRTG-----SSQVPQVFLNDK-LFGGLVALNSLRNSGT 238 (327)
Q Consensus 167 LYsk~~Cp~C~~ak~iL~elgV--~y~eiDVd~d~e~~~eL~~ltG-----~~tVPqIFInGe-~IGG~deL~~L~esGe 238 (327)
||+-..||+|....+++..+.. .+..+++...+.. ++.+..| ..+.-.+.-+|+ ...|.+-+..+...-.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~~ 78 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ--ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRLP 78 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh--hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHcC
Confidence 4667889999999999998864 5888888433321 1111111 123334433776 8899998887765433
Q ss_pred h-HHHHHHh
Q 039225 239 F-DERFREM 246 (327)
Q Consensus 239 L-~~~Lk~~ 246 (327)
. ..+|...
T Consensus 79 ~~~~~l~~l 87 (114)
T PF04134_consen 79 GPWRWLAWL 87 (114)
T ss_pred cchHHHHHH
Confidence 2 4444443
No 273
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.98 E-value=9.2 Score=33.13 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=20.8
Q ss_pred CCChhHHHHHHHHHHc------CCceEEEEcCCCh
Q 039225 171 SNCRDCTAVRRFFKQR------GLKFVEINVDVFP 199 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~ 199 (327)
+|||+|.+|.-.+.+. ++.|..++|...+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 7999999997665432 4557888887643
No 274
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=66.61 E-value=10 Score=36.40 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=50.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhhh--
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLRN-- 235 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~e-- 235 (327)
|+-++.++++-|..+-..|..+ .+.|..+....-+ +...+....+|.| |.+|..+|.+-.+.++..
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~d 224 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDD 224 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCC
Confidence 5558889999999999888766 4667777765322 1112344678988 569998887665544332
Q ss_pred --cCchHHHHHHhhc
Q 039225 236 --SGTFDERFREMLG 248 (327)
Q Consensus 236 --sGeL~~~Lk~~~~ 248 (327)
...|+.+|...|.
T Consensus 225 f~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 225 FFTEDLEAFLIEYGV 239 (265)
T ss_dssp --HHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHcCC
Confidence 2257777877664
No 275
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=66.50 E-value=6 Score=41.39 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCce
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGLKF 190 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y 190 (327)
+.-.+-|+.+||++|++..-++++++-.|
T Consensus 385 KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 385 KDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred cceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 45566799999999999999998886443
No 276
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=65.38 E-value=18 Score=30.52 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=28.1
Q ss_pred EEEEEc--CCChhHHHH-------HHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE
Q 039225 165 ISFFSR--SNCRDCTAV-------RRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV 217 (327)
Q Consensus 165 VvLYsk--~~Cp~C~~a-------k~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI 217 (327)
++|+.. .||+.|... .+.|++.|+.+.-+.++.....++.+++ .+ .++|.+
T Consensus 33 ~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~-~~-~~~~~l 92 (154)
T PRK09437 33 VLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK-EL-LNFTLL 92 (154)
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hC-CCCeEE
Confidence 444443 478999653 3334455777777766644444444433 34 356654
No 277
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=64.42 E-value=20 Score=31.26 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=19.9
Q ss_pred EEEEE--cCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225 165 ISFFS--RSNCRDCTAVRRFFKQ-------RGLKFVEINVD 196 (327)
Q Consensus 165 VvLYs--k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd 196 (327)
++||. ..||+.|......|.+ .|+.+.-+.++
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45544 5799999986555543 35555555544
No 278
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=64.40 E-value=24 Score=29.25 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=28.0
Q ss_pred EEE-EEcCC-ChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccE
Q 039225 165 ISF-FSRSN-CRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQ 216 (327)
Q Consensus 165 VvL-Ysk~~-Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPq 216 (327)
++| |+.+| |+.|.+-...|.++ |+.+.-++++. .+..+++.+..+...+|.
T Consensus 29 vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~ 86 (143)
T cd03014 29 KVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL-PFAQKRWCGAEGVDNVTT 86 (143)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC-HHHHHHHHHhcCCCCceE
Confidence 444 45556 79999876655433 55566666654 333344444444444553
No 279
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=63.60 E-value=28 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=20.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcC
Q 039225 164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVD 196 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd 196 (327)
.|+.|..+|||.|.+....|.++ ++.+.-+.++
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 35567789999998654444332 4555556554
No 280
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=62.29 E-value=18 Score=37.75 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=41.0
Q ss_pred hccCCcEEE--EEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225 159 EKIKGRISF--FSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219 (327)
Q Consensus 159 ~~~~~kVvL--Ysk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI 219 (327)
..++++|+| |+.+.|.+|..++++|++. .+.++++|...+. ++.+.+|...+|.+.|
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~----~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP----ESETLPKITKLPTVAL 425 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch----hhHhhcCCCcCCEEEE
Confidence 345666544 7778999999999999886 4567777776543 3444566777899876
No 281
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=62.13 E-value=7.2 Score=33.76 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=14.0
Q ss_pred EEEEEcCCChhHHHHHHH
Q 039225 165 ISFFSRSNCRDCTAVRRF 182 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~i 182 (327)
+++|.+.||++|++.++.
T Consensus 27 mv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 27 MVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEeCCcCHhHHHHHHH
Confidence 344677999999998764
No 282
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=60.73 E-value=31 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=15.4
Q ss_pred cEEEEEcCCChh-HHHHHHHHHH
Q 039225 164 RISFFSRSNCRD-CTAVRRFFKQ 185 (327)
Q Consensus 164 kVvLYsk~~Cp~-C~~ak~iL~e 185 (327)
-|+.|+.+||++ |.+-...|++
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHH
Confidence 466678899998 9865544443
No 283
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=59.96 E-value=12 Score=32.38 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCceEEEEc-CCChhHHHHHHH------HhCCCCccEEEeCCEEeechHHHHHh
Q 039225 178 AVRRFFKQRGLKFVEINV-DVFPPREKELIR------RTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 178 ~ak~iL~elgV~y~eiDV-d~d~e~~~eL~~------ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
...+++.+.|+.-..+.- ..+.+.++.+++ ..|...+|.++|||+.+-|.+.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 457788888886432211 223334433332 34889999999999999888877543
No 284
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=57.25 E-value=6.4 Score=38.37 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=58.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhc
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNS 236 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~es 236 (327)
.++|-.++.=.+++|+-.+.+.|+.|+.+||+-- ......+..+.-...||++.-+...|-..+.|.+..++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 7899999999999999999999999999999863 23334566666678899887777788888888777654
No 285
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.72 E-value=11 Score=31.45 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHH----HHc----CCceEEEEcCCChh
Q 039225 162 KGRISFFSRSNCRDCTAVRRFF----KQR----GLKFVEINVDVFPP 200 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL----~el----gV~y~eiDVd~d~e 200 (327)
+..|++|+-..||+|.+.-..+ +++ .+.|..+.+-.+..
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 4568999999999999885444 444 45678888765443
No 286
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=54.71 E-value=11 Score=32.15 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.3
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcC
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVD 196 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd 196 (327)
.+..|+.|+-..||+|.++...+..+ ++.|..+.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 35668899999999999987666543 3455555443
No 287
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=53.19 E-value=31 Score=31.45 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=26.9
Q ss_pred cEEEEEcCCChhHHHHHHHHH---HcCCce------EEEEcCCCh
Q 039225 164 RISFFSRSNCRDCTAVRRFFK---QRGLKF------VEINVDVFP 199 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~---elgV~y------~eiDVd~d~ 199 (327)
.|+-|..+||+.|+.-.-+|. ..|+++ .-+|++...
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~ 106 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAI 106 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccch
Confidence 455599999999998766654 457887 788877643
No 288
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=48.88 E-value=79 Score=29.99 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGR 249 (327)
Q Consensus 171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~Lk~~~~~ 249 (327)
.+=+|-.++++.|.++|+.+.++++...+. ++++.... ..=.|+|+| |.--.|..+.++-.|.++|++..++
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~--~~d~IyVgG---GNTF~LL~~lke~gld~iIr~~vk~ 117 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLM--KADIIYVGG---GNTFNLLQELKETGLDDIIRERVKA 117 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhh--hccEEEECC---chHHHHHHHHHHhCcHHHHHHHHHc
Confidence 356799999999999999999999997653 23333211 134566665 1122344433444466777776654
No 289
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.34 E-value=1.2e+02 Score=25.36 Aligned_cols=70 Identities=13% Similarity=0.371 Sum_probs=42.2
Q ss_pred cEEEEEcC-CChhHH------HHHHHHHHc--------CCceEEEEcCCCh--hHHHHHHH-H-hCCCCccEEEeCCEEe
Q 039225 164 RISFFSRS-NCRDCT------AVRRFFKQR--------GLKFVEINVDVFP--PREKELIR-R-TGSSQVPQVFLNDKLF 224 (327)
Q Consensus 164 kVvLYsk~-~Cp~C~------~ak~iL~el--------gV~y~eiDVd~d~--e~~~eL~~-l-tG~~tVPqIFInGe~I 224 (327)
++++|... -|..|. ..-.||+.. ...|+.+||...+ +.-.++.+ + ..---.|.|.|+|+.|
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiV 85 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIV 85 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEe
Confidence 46777764 365554 455666532 3457889996543 22223332 2 2346689999999999
Q ss_pred e-chHHHHHh
Q 039225 225 G-GLVALNSL 233 (327)
Q Consensus 225 G-G~deL~~L 233 (327)
+ |.-.++..
T Consensus 86 aeGnprlKdi 95 (106)
T COG4837 86 AEGNPRLKDI 95 (106)
T ss_pred ecCCchHHHH
Confidence 6 55555444
No 290
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=48.28 E-value=21 Score=32.36 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCceEEEEcC-CChhHH------HHHHHHhCCCCccEEEeCCEEeechH
Q 039225 177 TAVRRFFKQRGLKFVEINVD-VFPPRE------KELIRRTGSSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 177 ~~ak~iL~elgV~y~eiDVd-~d~e~~------~eL~~ltG~~tVPqIFInGe~IGG~d 228 (327)
...++++.+.|+.-+.++-. .+...+ ..+.+..|...+|.++|||+++=+..
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~ 182 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQ 182 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccc
Confidence 45677788888753222111 112222 22334468899999999999865443
No 291
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.45 E-value=38 Score=33.60 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225 163 GRISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQVF 218 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF 218 (327)
..++.|+.+||++|+.....+.+.. ..+....++.+ ....+....+...+|.+.
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEE
Confidence 4588889999999998865555442 33444444432 223344445556666663
No 292
>PF14096 DUF4274: Domain of unknown function (DUF4274)
Probab=44.73 E-value=13 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.8
Q ss_pred hhHHHHHHHhccccChhhhhhc
Q 039225 305 GSEMVDVLTHHFKCDRMKVRFV 326 (327)
Q Consensus 305 G~ElvdwL~~~~~~~r~~Av~~ 326 (327)
|.+.+.|+.+|..|++.+|+.+
T Consensus 19 ~~~v~~~il~~p~CD~~TAL~~ 40 (77)
T PF14096_consen 19 GFEVPKWILEHPKCDLATALLI 40 (77)
T ss_pred CcHHHHHHHcCCcccHHHHHHH
Confidence 9999999999999999999875
No 293
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=44.70 E-value=80 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=26.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF 198 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d 198 (327)
|++=+++.-+.++++...|+++|++|+..=.+-+
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 3444556679999999999999999887766665
No 294
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=44.50 E-value=68 Score=28.53 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=20.5
Q ss_pred EEEEE--cCCChhHHHHHHHH-------HHcCCceEEEEcCC
Q 039225 165 ISFFS--RSNCRDCTAVRRFF-------KQRGLKFVEINVDV 197 (327)
Q Consensus 165 VvLYs--k~~Cp~C~~ak~iL-------~elgV~y~eiDVd~ 197 (327)
++||. ..||+.|..-...| .+.|+.+.-+.++.
T Consensus 34 vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 34 SVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred EEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 55555 68999999854333 34466655555553
No 295
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=43.91 E-value=85 Score=26.96 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHHHHhh
Q 039225 175 DCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREML 247 (327)
Q Consensus 175 ~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~Lk~~~ 247 (327)
|-.++++.|+++|+.++.+++...... +..+.+ .+.-.||+.| |.-..+.+..+.-.|.+.|+++.
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i---~~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~~~ 66 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAI---READAIFLGG---GDTFRLLRQLKETGLDEAIREAY 66 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHH---HHSSEEEE-----S-HHHHHHHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChH-HHHHHH---HhCCEEEECC---CCHHHHHHHHHhCCHHHHHHHHH
Confidence 446889999999999999999874221 222222 2255777766 22223344445555777777654
No 296
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=42.99 E-value=56 Score=32.27 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=40.7
Q ss_pred cCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 170 RSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 170 k~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
--||+.|++++-+|+.+ .+.|.-+||+.+ .++.....+ ....+|.|-|.| .+|.+++...+
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~-~L~~a~~~L-~~~~~p~l~v~~-l~gdy~~~l~~ 147 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSRS-ELQRTLAEL-PLGNFSHVRCAG-LLGTYDDGLAW 147 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCHH-HHHHHHHhh-hhccCCCeEEEE-EEecHHHHHhh
Confidence 56899999999988866 356888999842 233333333 224578887776 56777665443
No 297
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.78 E-value=88 Score=28.29 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=47.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHh---C--------------------CCCccEEE-
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRT---G--------------------SSQVPQVF- 218 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~lt---G--------------------~~tVPqIF- 218 (327)
|++=+++.-+.-+.+-.+|+++|++|+..=++-+ |+...++.+-. | ..++|+|=
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 4444566678889999999999999999888876 45444443211 1 25677773
Q ss_pred -eCCEEeechHHHHHhh
Q 039225 219 -LNDKLFGGLVALNSLR 234 (327)
Q Consensus 219 -InGe~IGG~deL~~L~ 234 (327)
|..+.++|.|.|.+-.
T Consensus 87 Pv~s~~L~GlDSL~SiV 103 (162)
T COG0041 87 PVQSKALSGLDSLLSIV 103 (162)
T ss_pred cCccccccchHHHHHHh
Confidence 5667778887765543
No 298
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=42.73 E-value=21 Score=30.42 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCceEEEEcC-CChhHHHH------HHHHhCCCCccEEEeCCEEeechH
Q 039225 177 TAVRRFFKQRGLKFVEINVD-VFPPREKE------LIRRTGSSQVPQVFLNDKLFGGLV 228 (327)
Q Consensus 177 ~~ak~iL~elgV~y~eiDVd-~d~e~~~e------L~~ltG~~tVPqIFInGe~IGG~d 228 (327)
..+.+++.+.|+..+.++-. .+.+.++. +....|...+|.++|||+.+-+..
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 45667777888754332211 12222222 223358889999999999764443
No 299
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=42.62 E-value=42 Score=28.06 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=33.8
Q ss_pred CChhHHHH-HHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225 172 NCRDCTAV-RRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFG 225 (327)
Q Consensus 172 ~Cp~C~~a-k~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IG 225 (327)
.|-.|..| +++|...||+.+.+.+.. ..+.. -..++.|.. =.|-.||.|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~~--~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGPQ--ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcCC--cceeeCCEEEE
Confidence 59999877 799999999988888865 22211 122233222 46778888776
No 300
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.20 E-value=62 Score=33.67 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=46.9
Q ss_pred cCCChhHHHHHHHHHHc--CCc-eEEEEcCCChhH-HHHHHHH---hCC--CCccEEE---e----CCEEeechHHHHHh
Q 039225 170 RSNCRDCTAVRRFFKQR--GLK-FVEINVDVFPPR-EKELIRR---TGS--SQVPQVF---L----NDKLFGGLVALNSL 233 (327)
Q Consensus 170 k~~Cp~C~~ak~iL~el--gV~-y~eiDVd~d~e~-~~eL~~l---tG~--~tVPqIF---I----nGe~IGG~deL~~L 233 (327)
+..|||=.+|.-+-+.+ +++ |...-|.++|+. .+.|+.+ .|| ..-|.|. + .|.++||+.|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 46799999998666655 444 888888888753 3334444 466 5679985 3 67799999999887
Q ss_pred hh
Q 039225 234 RN 235 (327)
Q Consensus 234 ~e 235 (327)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 53
No 301
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=41.19 E-value=8.4 Score=36.85 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK 222 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe 222 (327)
.++|..+|||-|..-+..|..+ +|.+-++||...+.+. .+.-...+|+|| .+|+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLs----GRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLS----GRFLVTALPTIYHVKDGE 105 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccc----eeeEEEecceEEEeeccc
Confidence 4578889999999999999765 6678899998877632 122235689997 5665
No 302
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=41.17 E-value=11 Score=42.17 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhh
Q 039225 273 MDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKV 323 (327)
Q Consensus 273 ~DEla~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~A 323 (327)
+-=|..++-+++....+.+|+.---+|++.|+|+|+||.|+.--. .||.=|
T Consensus 275 pAlLS~vA~efk~~l~lg~~~Kdgl~y~daFtGseavdvl~~Ii~t~DrnLa 326 (1175)
T COG5422 275 PALLSRVAVEFKMRLQLGDHKKDGLLYRDAFTGSEAVDVLMLIIRTSDRNLA 326 (1175)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhHHHHhhhccchhhHhhhhhhhcccccee
Confidence 334566677789999999999877889999999999999987655 666544
No 303
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=37.74 E-value=85 Score=28.36 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEE--EEcCCChhHHHHHHH-------HHHcCCceEEEEcCC
Q 039225 165 ISF--FSRSNCRDCTAVRRF-------FKQRGLKFVEINVDV 197 (327)
Q Consensus 165 VvL--Ysk~~Cp~C~~ak~i-------L~elgV~y~eiDVd~ 197 (327)
++| |...+||.|..-... |++.|+.+.-+.++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 555 456799999975433 345577766666664
No 304
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=37.38 E-value=33 Score=25.29 Aligned_cols=53 Identities=8% Similarity=0.215 Sum_probs=29.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe 222 (327)
+.||+...=-.+..++.+|++.||++...|-....- ....|....+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-----~g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY-----AGEPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh-----hcccCccCceEEEECHH
Confidence 457777766778899999999999998877664322 11145555588888775
No 305
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=36.91 E-value=68 Score=26.52 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCc-eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-FVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe 222 (327)
.+++|+|.....|.+..++++ ..+.|.. +..+|-.........+.......++|.++|..+
T Consensus 42 ~~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~ 103 (122)
T cd04816 42 VKGAIVLVDRGGCPFADKQKV-AAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKA 103 (122)
T ss_pred cCCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHH
Confidence 578999999999999998886 5556655 444443321110000000012345788888754
No 306
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=36.28 E-value=95 Score=25.15 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=24.3
Q ss_pred hccCCcEEE--EEcCCChhHHHHHHHHHHc-----CCceEEEEc
Q 039225 159 EKIKGRISF--FSRSNCRDCTAVRRFFKQR-----GLKFVEINV 195 (327)
Q Consensus 159 ~~~~~kVvL--Ysk~~Cp~C~~ak~iL~el-----gV~y~eiDV 195 (327)
+.++++|+| |+... ++|..++++|++. .|.+++.+.
T Consensus 15 ~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~ 57 (94)
T cd02974 15 ERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDND 57 (94)
T ss_pred HhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecC
Confidence 346666655 65556 9999999999876 344554443
No 307
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=35.55 E-value=1.3e+02 Score=26.14 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=23.8
Q ss_pred EEEEEcCC-ChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCC
Q 039225 165 ISFFSRSN-CRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGS 211 (327)
Q Consensus 165 VvLYsk~~-Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~ 211 (327)
|+.|+.+| |+.|.+-...|.++ ++.+.-+.++. +...+++.+..|.
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~-~~~~~~f~~~~~~ 99 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL-PFAQKRFCGAEGL 99 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC-HHHHHHHHHhCCC
Confidence 44455567 99999865555442 34444444442 2233344444443
No 308
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.44 E-value=41 Score=28.98 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=26.5
Q ss_pred cEEEEEcCCChhHHHHHHHHH----Hc-CCceEEEEcCCChh
Q 039225 164 RISFFSRSNCRDCTAVRRFFK----QR-GLKFVEINVDVFPP 200 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~ak~iL~----el-gV~y~eiDVd~d~e 200 (327)
+|++|+-..||||-.+...|. .+ ++.++.+-+...+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 488999999999998765554 44 77776666654433
No 309
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=34.27 E-value=89 Score=29.18 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcC--CChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVD--VFPPREKELIRRTGSSQVPQVFLNDKLF 224 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd--~d~e~~~eL~~ltG~~tVPqIFInGe~I 224 (327)
..+++.+|.+..|+.|......|..-+-+++.+=|+ .+... |........+|.--|+...|
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~---Ir~WA~~~~Idp~~V~~~~I 170 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDER---IRQWANRHQIDPAKVRSRQI 170 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHH---HHHHHHHcCCCHHHeecCee
Confidence 357899999999999999988887778788887777 33332 22222234455555554433
No 310
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.99 E-value=87 Score=27.33 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCceEEEEc-CCChh----HHHH--HHHHhCCCCccEEEeCCE-EeechHHHHH
Q 039225 178 AVRRFFKQRGLKFVEINV-DVFPP----REKE--LIRRTGSSQVPQVFLNDK-LFGGLVALNS 232 (327)
Q Consensus 178 ~ak~iL~elgV~y~eiDV-d~d~e----~~~e--L~~ltG~~tVPqIFInGe-~IGG~deL~~ 232 (327)
...+++.+.|+.-..+.- ..+.+ +++. .....|...+|.++|||+ .+.|......
T Consensus 133 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 133 VLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHH
Confidence 456777888875422211 11111 2221 222348889999999988 4577765433
No 311
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=33.53 E-value=1.1e+02 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=34.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCcc-EEEeC--CEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVP-QVFLN--DKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVP-qIFIn--Ge~I 224 (327)
+.++.-+....=..+++++++++++|..+..+.+.. +.+.+|...+| .++|| |+.+
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~----~~~~~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK----LGLDLGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc----hHHhcCCeeCCeEEEEcCCceEE
Confidence 444443333333556789999999887655554433 44456778899 56674 6633
No 312
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=32.88 E-value=76 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=29.5
Q ss_pred CChhHHH-----------HHHHHHHcCCc--eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225 172 NCRDCTA-----------VRRFFKQRGLK--FVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224 (327)
Q Consensus 172 ~Cp~C~~-----------ak~iL~elgV~--y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I 224 (327)
+|+-|.. ++..|..+|+. |+++.++... +...+ .+.|.|-|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~-----~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE-----FARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH-----Hhhcc--cCCCeeeECCEeh
Confidence 7887763 44556677876 5667666432 22222 6679999999843
No 313
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=32.15 E-value=1e+02 Score=27.93 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=12.2
Q ss_pred cEEEEEcCCChhHHHH
Q 039225 164 RISFFSRSNCRDCTAV 179 (327)
Q Consensus 164 kVvLYsk~~Cp~C~~a 179 (327)
-+++|+.+||++|.+.
T Consensus 28 vLVvf~AS~C~~~~q~ 43 (183)
T PRK10606 28 LLIVNVASKCGLTPQY 43 (183)
T ss_pred EEEEEEeCCCCCcHHH
Confidence 3556888999999754
No 314
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=31.44 E-value=60 Score=27.94 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=33.7
Q ss_pred HHHHHHHcCCceEEEEc-CCChhHHHHHH------HHhCCCCccEEEeCCE-EeechHHHHHh
Q 039225 179 VRRFFKQRGLKFVEINV-DVFPPREKELI------RRTGSSQVPQVFLNDK-LFGGLVALNSL 233 (327)
Q Consensus 179 ak~iL~elgV~y~eiDV-d~d~e~~~eL~------~ltG~~tVPqIFInGe-~IGG~deL~~L 233 (327)
...++.+.|+.-..++- ..+++.++.+. ...|...||.++|||+ .+-|.+.+-.+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 56777777875433222 12344433333 3358899999999999 78888766544
No 315
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.43 E-value=91 Score=26.58 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhC--CCCccEEEeCCE
Q 039225 172 NCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTG--SSQVPQVFLNDK 222 (327)
Q Consensus 172 ~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG--~~tVPqIFInGe 222 (327)
.||+|..+.-+|... .+.+..++.-.. |.++.++.| .-+.|+++.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCC
Confidence 499999999999876 344555555432 335555565 478999998763
No 316
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=29.36 E-value=1.4e+02 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred cEEEEE--cCCChhHHHHHHHH-------HHcCCceEEEEcCC
Q 039225 164 RISFFS--RSNCRDCTAVRRFF-------KQRGLKFVEINVDV 197 (327)
Q Consensus 164 kVvLYs--k~~Cp~C~~ak~iL-------~elgV~y~eiDVd~ 197 (327)
.|+||+ ..|||.|..-...| ++.|+.+.-+.++.
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 355554 58999999844333 34465555555553
No 317
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.30 E-value=2.7e+02 Score=25.27 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHc-CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHHHHhh
Q 039225 174 RDCTAVRRFFKQR-GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREML 247 (327)
Q Consensus 174 p~C~~ak~iL~el-gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~Lk~~~ 247 (327)
.|...+++.|+++ |+.++.+++..+++..+.|.. .=.||+.| |....+.+..+.-.|.+.|++..
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~~~ 111 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLE------ADVIYVGG---GNTFNLLAQWREHGLDAILKAAL 111 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhc------CCEEEECC---chHHHHHHHHHHcCHHHHHHHHH
Confidence 5788899999999 999888887654444444443 35788888 55555555445446788887754
No 318
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=28.04 E-value=1.1e+02 Score=25.67 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=42.3
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCc-eEEEEcCCChhHHHHHH--H-H-hCCCCccEEEeCCEEeechHHHHHhhh
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-FVEINVDVFPPREKELI--R-R-TGSSQVPQVFLNDKLFGGLVALNSLRN 235 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-y~eiDVd~d~e~~~eL~--~-l-tG~~tVPqIFInGe~IGG~deL~~L~e 235 (327)
.+++|+|.-+.+|.|-.+++. .++.|.. +..+|...++. ...+. . - ....++|.++|..+ .-+.|++..+
T Consensus 33 ~~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~-~~~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~l~ 107 (118)
T cd02127 33 INGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSD-EYYVEMIQDDSSRRADIPAAFLLGK---NGYMIRKTLE 107 (118)
T ss_pred cCCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCcc-ccceEecCCCCCCCceEEEEEecHH---HHHHHHHHHH
Confidence 467899999999999999887 5666665 44555543321 11110 0 0 12247899998764 2333444444
Q ss_pred cC
Q 039225 236 SG 237 (327)
Q Consensus 236 sG 237 (327)
.|
T Consensus 108 ~g 109 (118)
T cd02127 108 RL 109 (118)
T ss_pred cC
Confidence 44
No 319
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=27.80 E-value=1.7e+02 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=38.1
Q ss_pred cEEEEEcC-----CChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCcc
Q 039225 164 RISFFSRS-----NCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVP 215 (327)
Q Consensus 164 kVvLYsk~-----~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVP 215 (327)
.|++|... .-++=..++.+|+++ ++.|+.+|.+.+++..++.....|...++
T Consensus 28 ~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 28 TITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred EEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 35556555 467788899999988 68899999988787777766666655443
No 320
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=27.17 E-value=57 Score=24.38 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.1
Q ss_pred cCCcchhHHHHHHHhcc
Q 039225 300 KNCFSGSEMVDVLTHHF 316 (327)
Q Consensus 300 ~~cF~G~ElvdwL~~~~ 316 (327)
+.||+|+|++..+....
T Consensus 40 Kg~yiGqe~l~r~~~~g 56 (67)
T TIGR03317 40 KGCYVGQEVVARMHYRG 56 (67)
T ss_pred CCCccCHHHHHHHHHcC
Confidence 35999999998776433
No 321
>PRK13599 putative peroxiredoxin; Provisional
Probab=27.04 E-value=1.4e+02 Score=27.58 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEE--cCCChhHHHHH-------HHHHHcCCceEEEEcCC
Q 039225 165 ISFFS--RSNCRDCTAVR-------RFFKQRGLKFVEINVDV 197 (327)
Q Consensus 165 VvLYs--k~~Cp~C~~ak-------~iL~elgV~y~eiDVd~ 197 (327)
++||+ ..|||.|..-. .-|++.|+.+.-+.++.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44444 57999999743 33444577666666654
No 322
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=72 Score=29.07 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=20.8
Q ss_pred HhCCCCccEEEeCCEEeechHHHHHh
Q 039225 208 RTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 208 ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
..|....|.+||+|+.++|.-++.++
T Consensus 210 ~~gv~gTPt~~v~~~~~~g~~~~~~l 235 (244)
T COG1651 210 QLGVNGTPTFIVNGKLVPGLPDLDEL 235 (244)
T ss_pred hcCCCcCCeEEECCeeecCCCCHHHH
Confidence 35788999999999989888765443
No 323
>PRK13190 putative peroxiredoxin; Provisional
Probab=25.92 E-value=1.5e+02 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEE--EEcCCChhHHHHHHHHH-------HcCCceEEEEcCC
Q 039225 165 ISF--FSRSNCRDCTAVRRFFK-------QRGLKFVEINVDV 197 (327)
Q Consensus 165 VvL--Ysk~~Cp~C~~ak~iL~-------elgV~y~eiDVd~ 197 (327)
++| |...|||.|..-...|. +.|+.+.-+.++.
T Consensus 30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 555 45689999997544443 3566666666554
No 324
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=24.09 E-value=5.5e+02 Score=23.40 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=45.8
Q ss_pred CcEEEEEcC---CChhHHHHHHHHHHcCCc-eEEEEcCC-----ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225 163 GRISFFSRS---NCRDCTAVRRFFKQRGLK-FVEINVDV-----FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL 233 (327)
Q Consensus 163 ~kVvLYsk~---~Cp~C~~ak~iL~elgV~-y~eiDVd~-----d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L 233 (327)
.+|++.-.. .+.+|.+..+.|+++|+. ...+++.. +++..+.|.. .-.|||.|- .-..+.+.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~------ad~I~~~GG---~~~~~~~~ 100 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD------ADGIFFTGG---DQLRITSA 100 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh------CCEEEEeCC---cHHHHHHH
Confidence 455554443 388999999999999985 66677763 4444444443 456777662 22334443
Q ss_pred hhcCchHHHHHHhh
Q 039225 234 RNSGTFDERFREML 247 (327)
Q Consensus 234 ~esGeL~~~Lk~~~ 247 (327)
.+.-.|.+.|++..
T Consensus 101 l~~t~l~~~l~~~~ 114 (217)
T cd03145 101 LGGTPLLDALRKVY 114 (217)
T ss_pred HcCChHHHHHHHHH
Confidence 44445666666654
No 325
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=24.02 E-value=75 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=22.6
Q ss_pred CcEEEEEcCCChhHHHHHHH------HHHc---CCceEEEEc
Q 039225 163 GRISFFSRSNCRDCTAVRRF------FKQR---GLKFVEINV 195 (327)
Q Consensus 163 ~kVvLYsk~~Cp~C~~ak~i------L~el---gV~y~eiDV 195 (327)
..|+-|+.-+||+|.+.... +.+. ++.+..+.+
T Consensus 39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45899999999999996532 2333 455665555
No 326
>PRK13189 peroxiredoxin; Provisional
Probab=23.57 E-value=1.8e+02 Score=26.82 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=20.9
Q ss_pred EEE--EEcCCChhHHHHHH-------HHHHcCCceEEEEcCCC
Q 039225 165 ISF--FSRSNCRDCTAVRR-------FFKQRGLKFVEINVDVF 198 (327)
Q Consensus 165 VvL--Ysk~~Cp~C~~ak~-------iL~elgV~y~eiDVd~d 198 (327)
++| |-..||+.|..-.. -|++.|+.+.-+.++..
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 555 44689999996433 34455676666665543
No 327
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=23.53 E-value=2.4e+02 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=26.3
Q ss_pred CcEEEEEc--CCChhHHHH--------HHHHHHcCC-ceEEEEcCCChhHHHHHHHHhCC
Q 039225 163 GRISFFSR--SNCRDCTAV--------RRFFKQRGL-KFVEINVDVFPPREKELIRRTGS 211 (327)
Q Consensus 163 ~kVvLYsk--~~Cp~C~~a--------k~iL~elgV-~y~eiDVd~d~e~~~eL~~ltG~ 211 (327)
..++||.. .+||.|..- ..-|++.|+ .+.-+..+. +...+++.+..+.
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~-~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND-PFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC-HHHHHHHHHhhCC
Confidence 35777665 479999874 334445566 355555543 3334445554443
No 328
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=23.05 E-value=57 Score=24.68 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=13.0
Q ss_pred EEeCCEEeechHHHHHh
Q 039225 217 VFLNDKLFGGLVALNSL 233 (327)
Q Consensus 217 IFInGe~IGG~deL~~L 233 (327)
||+||.++|=.++-.++
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999977654433
No 329
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=22.84 E-value=1.3e+02 Score=28.83 Aligned_cols=77 Identities=12% Similarity=0.220 Sum_probs=43.7
Q ss_pred EEEcCCChhHHHHHHHHHHcCCce---EEEEcCC-ChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhh----hc
Q 039225 167 FFSRSNCRDCTAVRRFFKQRGLKF---VEINVDV-FPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLR----NS 236 (327)
Q Consensus 167 LYsk~~Cp~C~~ak~iL~elgV~y---~eiDVd~-d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~----es 236 (327)
..+-++-+-|......|.-+..+| ....|.. ...... ......+|.+ |-||++||.|-.+.+-. -.
T Consensus 165 hIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~----~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa 240 (273)
T KOG3171|consen 165 HIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASD----RFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFA 240 (273)
T ss_pred EEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchh----hhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhh
Confidence 344577777877777776665432 2222221 111111 1223456765 66999999997766543 35
Q ss_pred CchHHHHHHhh
Q 039225 237 GTFDERFREML 247 (327)
Q Consensus 237 GeL~~~Lk~~~ 247 (327)
|+|...|.+-+
T Consensus 241 ~dle~FL~e~g 251 (273)
T KOG3171|consen 241 GDLESFLNEYG 251 (273)
T ss_pred hhHHHHHHHcC
Confidence 66777776544
No 330
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=22.81 E-value=2e+02 Score=25.78 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=21.1
Q ss_pred EEEEEc--CCChhHHHHHHH-------HHHcCCceEEEEcCCCh
Q 039225 165 ISFFSR--SNCRDCTAVRRF-------FKQRGLKFVEINVDVFP 199 (327)
Q Consensus 165 VvLYsk--~~Cp~C~~ak~i-------L~elgV~y~eiDVd~d~ 199 (327)
++||+. .+|+.|.....- |++.|+.+.-+.++...
T Consensus 39 ~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 39 VVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 555554 567777764333 34457777777776543
No 331
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=22.79 E-value=2.4e+02 Score=22.68 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=36.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCcc-EEEeC--CEEe
Q 039225 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVP-QVFLN--DKLF 224 (327)
Q Consensus 165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVP-qIFIn--Ge~I 224 (327)
+.+++-+.-..=..+++++++++++|..+.++... ++...+|...+| .++|+ |+.+
T Consensus 56 ~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 56 VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG----RVGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc----hHHHhcCCCCCCeEEEECCCceEE
Confidence 55555444344567788999999988666665432 355667888899 66674 5533
No 332
>PRK15000 peroxidase; Provisional
Probab=21.82 E-value=2.4e+02 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred cEEEEEcC--CChhHHHHHHHH-------HHcCCceEEEEcCC
Q 039225 164 RISFFSRS--NCRDCTAVRRFF-------KQRGLKFVEINVDV 197 (327)
Q Consensus 164 kVvLYsk~--~Cp~C~~ak~iL-------~elgV~y~eiDVd~ 197 (327)
.|+||+.+ +|+-|..-..-| ++.|+.+.-+.++.
T Consensus 36 ~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 36 TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46666654 799999854444 34466555555553
No 333
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=21.34 E-value=2.1e+02 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC-----hhHHHHHHHHhCCCCccEEEe--CC-EEeechHHHHHh
Q 039225 162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF-----PPREKELIRRTGSSQVPQVFL--ND-KLFGGLVALNSL 233 (327)
Q Consensus 162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-----~e~~~eL~~ltG~~tVPqIFI--nG-e~IGG~deL~~L 233 (327)
..+.++|....+.||. .+..+-+|+....|.++.+ .++++.|.+......+|.++| -| ..-|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3578899999888886 6777888888888888763 246666666555666784432 34 455788877654
No 334
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.33 E-value=1.8e+02 Score=29.94 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=20.9
Q ss_pred hccCCcEEE-EEcCCChhHHHHHHHHHHc
Q 039225 159 EKIKGRISF-FSRSNCRDCTAVRRFFKQR 186 (327)
Q Consensus 159 ~~~~~kVvL-Ysk~~Cp~C~~ak~iL~el 186 (327)
+.++++|.| ++...|++|..++++|++.
T Consensus 15 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 15 ELLERPIELVASLDDSEKSAELKELLEEI 43 (517)
T ss_pred HhCCCCEEEEEEeCCCchHHHHHHHHHHH
Confidence 346666655 3344899999999999887
No 335
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=20.45 E-value=2.3e+02 Score=23.32 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=39.7
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHHcCCc-eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-FVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG 237 (327)
Q Consensus 161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG 237 (327)
.+++|+|.-...|.+..+++. ..+.|.. +..+|-..+......+ .......+|.++|..+ .-+.|+++.++|
T Consensus 43 ~~gkIvlv~rg~c~f~~K~~~-A~~aGA~~vIv~n~~~~~~~~~~~-~~~~~~~Ip~v~Is~~---~G~~L~~~l~~g 115 (122)
T cd02130 43 VAGNIALIERGECPFGDKSAL-AGAAGAAAAIIYNNVPAGGLSGTL-GEPSGPYVPTVGISQE---DGKALVAALANG 115 (122)
T ss_pred CCCEEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccccc-CCCCCCEeeEEEecHH---HHHHHHHHHhcC
Confidence 678999999999999888776 4555655 4444433211111000 0011346788887654 333444444444
Done!