BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039226
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W0N|A Chain A, Plasticity Of Pas Domain And Potential Role For Signal
          Transduction In The Histidine-Kinase Dcus
          Length = 118

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 53 EPAECSSLFVESMKWMQSVQEGFVG 77
          EP E S+LF +    +QS++EG V 
Sbjct: 6  EPYEISTLFEQRQAMLQSIKEGVVA 30


>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
          Form)
 pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
          Form)
 pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
 pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
 pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
 pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
          Length = 212

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 54 PAECSSLFVESMKWMQSVQEGFV 76
          PA+  S  VESM W  ++Q GF 
Sbjct: 48 PAKWVSTSVESMDWDSAIQTGFT 70


>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
          Molecular Replacement
          Length = 227

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 54 PAECSSLFVESMKWMQSVQEGFV 76
          PA+  S  VESM W  ++Q GF 
Sbjct: 67 PAKWVSTSVESMDWDSAIQTGFT 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.131    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,656,656
Number of Sequences: 62578
Number of extensions: 122578
Number of successful extensions: 254
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 13
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)