Query 039226
Match_columns 121
No_of_seqs 104 out of 286
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lo3_A SAGA-associated factor 88.9 0.13 4.4E-06 29.9 0.9 30 3-33 5-35 (44)
2 3mao_A Methionine-R-sulfoxide 86.7 0.76 2.6E-05 31.4 3.9 29 1-31 2-30 (105)
3 2qfd_A Probable ATP-dependent 82.1 0.73 2.5E-05 33.1 2.3 80 9-101 22-106 (145)
4 3eqt_A ATP-dependent RNA helic 78.3 0.68 2.3E-05 33.3 1.1 78 8-101 7-92 (145)
5 3mhs_E SAGA-associated factor 75.9 0.75 2.6E-05 31.0 0.7 30 4-34 64-94 (96)
6 3ga3_A Interferon-induced heli 70.1 2.3 7.7E-05 30.1 2.1 76 9-101 7-89 (133)
7 2kiz_A E3 ubiquitin-protein li 69.1 4.4 0.00015 23.8 3.0 60 1-90 1-62 (69)
8 3cxk_A Methionine-R-sulfoxide 66.5 4.7 0.00016 29.4 3.2 66 10-96 69-139 (164)
9 2k8d_A Peptide methionine sulf 66.0 2.7 9.3E-05 30.3 1.8 66 10-96 57-127 (151)
10 3flo_B DNA polymerase alpha ca 65.3 2.5 8.5E-05 31.7 1.6 29 79-107 22-61 (206)
11 2k2d_A Ring finger and CHY zin 63.8 3.2 0.00011 26.6 1.7 30 77-106 35-66 (79)
12 4a2v_A RIG-I, retinoic acid in 63.7 3.2 0.00011 29.2 1.8 75 11-101 4-87 (131)
13 2jrp_A Putative cytoplasmic pr 62.2 3.5 0.00012 26.8 1.7 6 112-117 62-67 (81)
14 3h0g_L DNA-directed RNA polyme 61.0 4.6 0.00016 25.0 1.9 27 79-105 21-48 (63)
15 3mjh_B Early endosome antigen 60.7 2.8 9.5E-05 22.9 0.8 17 76-93 3-19 (34)
16 3q87_A Putative uncharacterize 60.6 3 0.0001 29.2 1.1 15 74-88 94-108 (125)
17 3lrr_A Probable ATP-dependent 57.1 2.2 7.7E-05 29.6 0.0 75 11-101 2-84 (121)
18 2cuq_A Four and A half LIM dom 55.9 5.8 0.0002 24.0 1.8 11 78-88 2-12 (80)
19 2ehe_A Four and A half LIM dom 55.6 5 0.00017 24.5 1.5 9 82-90 18-26 (82)
20 2kpi_A Uncharacterized protein 55.3 4 0.00014 24.4 0.9 26 78-104 9-37 (56)
21 2lvu_A Zinc finger and BTB dom 58.3 2.8 9.7E-05 19.0 0.0 21 14-34 2-22 (26)
22 3e0m_A Peptide methionine sulf 50.7 12 0.00041 29.9 3.3 65 10-96 205-275 (313)
23 3j21_g 50S ribosomal protein L 49.9 6.8 0.00023 23.2 1.3 26 76-104 11-37 (51)
24 2lvt_A Zinc finger and BTB dom 51.5 4.4 0.00015 18.7 0.0 21 14-34 2-22 (29)
25 2cup_A Skeletal muscle LIM-pro 44.5 6.5 0.00022 24.8 0.7 28 76-108 51-79 (101)
26 2lvr_A Zinc finger and BTB dom 50.1 4.8 0.00016 18.5 0.0 21 14-34 3-23 (30)
27 1gh9_A 8.3 kDa protein (gene M 44.2 13 0.00043 23.4 2.0 23 80-105 5-30 (71)
28 1x3h_A Leupaxin; paxillin fami 43.5 13 0.00043 22.4 1.9 8 82-89 18-25 (80)
29 2egq_A FHL1 protein; LIM domai 42.4 13 0.00044 22.2 1.9 10 81-90 17-26 (77)
30 2zkr_2 60S ribosomal protein L 42.2 9.8 0.00034 25.5 1.3 10 79-88 16-25 (97)
31 3na7_A HP0958; flagellar bioge 42.0 8.4 0.00029 29.0 1.1 34 54-89 198-232 (256)
32 2jvx_A NF-kappa-B essential mo 41.8 10 0.00034 19.8 1.1 14 78-91 2-15 (28)
33 3lpe_B DNA-directed RNA polyme 41.5 9.6 0.00033 23.1 1.1 16 81-97 15-30 (59)
34 2kao_A Methionine-R-sulfoxide 41.2 16 0.00054 25.5 2.3 21 10-30 16-36 (124)
35 1faq_A RAF-1; transferase, ser 40.5 13 0.00043 21.0 1.5 23 79-105 14-37 (52)
36 2kv1_A Methionine-R-sulfoxide 40.3 15 0.00051 25.6 2.1 20 11-30 17-36 (124)
37 1wfl_A Zinc finger protein 216 40.1 13 0.00046 23.6 1.6 25 78-105 24-48 (74)
38 2m0e_A Zinc finger and BTB dom 39.6 3.4 0.00012 18.8 -1.0 20 14-33 2-21 (29)
39 1v87_A Deltex protein 2; ring- 39.2 9 0.00031 24.7 0.8 35 55-92 59-95 (114)
40 2m0f_A Zinc finger and BTB dom 37.9 2.6 8.9E-05 19.3 -1.6 20 14-33 2-21 (29)
41 1hxr_A Guanine nucleotide exch 37.8 12 0.00041 25.5 1.3 19 73-91 6-24 (115)
42 1wff_A Riken cDNA 2810002D23 p 37.8 15 0.00052 23.9 1.7 25 79-105 25-49 (85)
43 1wfh_A Zinc finger (AN1-like) 37.6 14 0.00047 22.9 1.4 26 77-105 13-38 (64)
44 1klr_A Zinc finger Y-chromosom 37.0 2.9 9.8E-05 19.2 -1.5 19 15-33 3-21 (30)
45 1rik_A E6APC1 peptide; E6-bind 36.8 3.8 0.00013 18.8 -1.1 20 14-33 2-21 (29)
46 2dmd_A Zinc finger protein 64, 36.0 8.8 0.0003 23.0 0.3 70 11-89 5-74 (96)
47 2kvh_A Zinc finger and BTB dom 35.9 3 0.0001 19.1 -1.6 20 14-33 3-22 (27)
48 1znf_A 31ST zinc finger from X 35.8 2.5 8.6E-05 19.2 -1.9 19 15-33 2-20 (27)
49 2aus_D NOP10, ribosome biogene 35.4 23 0.00078 21.6 2.1 21 80-105 6-27 (60)
50 2m0d_A Zinc finger and BTB dom 34.0 3.3 0.00011 19.0 -1.6 20 14-33 3-22 (30)
51 1wg2_A Zinc finger (AN1-like) 33.6 19 0.00065 22.3 1.6 26 77-105 13-38 (64)
52 2apo_B Ribosome biogenesis pro 33.3 27 0.00094 21.2 2.2 21 80-105 7-28 (60)
53 2riq_A Poly [ADP-ribose] polym 33.2 15 0.00053 26.5 1.2 31 72-105 70-101 (160)
54 3e0o_A Peptide methionine sulf 32.7 20 0.00068 25.6 1.7 21 10-30 38-58 (144)
55 2kvg_A Zinc finger and BTB dom 32.0 3.5 0.00012 19.0 -1.7 20 14-33 3-22 (27)
56 2kvf_A Zinc finger and BTB dom 31.8 3.8 0.00013 18.7 -1.6 20 14-33 3-22 (28)
57 1yc5_A NAD-dependent deacetyla 31.7 32 0.0011 25.6 2.9 37 77-116 119-166 (246)
58 1nui_A DNA primase/helicase; z 30.6 25 0.00084 26.0 2.1 31 74-105 9-43 (255)
59 2ecm_A Ring finger and CHY zin 30.1 38 0.0013 18.4 2.4 27 56-90 26-54 (55)
60 2hf1_A Tetraacyldisaccharide-1 30.0 14 0.00046 22.9 0.4 27 77-104 6-35 (68)
61 4esj_A Type-2 restriction enzy 29.7 8 0.00027 30.1 -0.8 23 72-94 27-50 (257)
62 2pk7_A Uncharacterized protein 29.6 13 0.00044 23.1 0.3 26 78-104 7-35 (69)
63 1srk_A Zinc finger protein ZFP 29.5 4.7 0.00016 19.6 -1.6 20 14-33 7-26 (35)
64 3hcj_A MSRB, peptide methionin 29.5 20 0.0007 25.8 1.4 20 10-29 46-65 (154)
65 2jr6_A UPF0434 protein NMA0874 29.5 14 0.00047 22.9 0.4 26 78-104 7-35 (68)
66 3u31_A SIR2A, transcriptional 29.4 40 0.0014 26.1 3.2 33 78-113 153-199 (290)
67 4b6d_A RAC GTPase-activating p 29.3 20 0.00068 21.5 1.1 27 78-105 18-45 (61)
68 1x63_A Skeletal muscle LIM-pro 29.0 22 0.00077 21.3 1.4 10 81-90 17-26 (82)
69 2l1u_A MSRB2, methionine-R-sul 28.9 21 0.00072 25.4 1.3 20 10-29 33-52 (143)
70 1qf8_A Casein kinase II; casei 28.9 23 0.00079 26.0 1.6 14 74-87 129-142 (182)
71 2js4_A UPF0434 protein BB2007; 28.8 14 0.00049 22.9 0.4 26 78-104 7-35 (70)
72 1ryq_A DNA-directed RNA polyme 28.7 19 0.00065 22.6 1.0 16 82-97 26-41 (69)
73 1paa_A Yeast transcription fac 28.6 4.9 0.00017 18.6 -1.5 19 15-33 3-21 (30)
74 1kbe_A Kinase suppressor of RA 28.6 17 0.00059 21.0 0.7 16 81-100 16-31 (49)
75 2els_A Zinc finger protein 406 28.2 7.5 0.00026 19.0 -0.9 22 12-33 7-28 (36)
76 4dgl_A Casein kinase II subuni 28.1 25 0.00085 26.6 1.7 14 74-87 129-142 (215)
77 1twf_L ABC10-alpha, DNA-direct 28.0 12 0.0004 23.4 -0.1 11 79-89 45-55 (70)
78 2ecv_A Tripartite motif-contai 27.2 12 0.0004 22.4 -0.2 33 56-90 36-70 (85)
79 2i5o_A DNA polymerase ETA; zin 27.1 12 0.0004 20.9 -0.2 24 9-33 4-27 (39)
80 1vq8_1 50S ribosomal protein L 27.1 10 0.00035 23.1 -0.5 17 79-95 32-52 (57)
81 1ma3_A SIR2-AF2, transcription 26.9 43 0.0015 25.0 2.9 37 77-116 121-169 (253)
82 2elo_A Zinc finger protein 406 26.8 4.5 0.00015 19.9 -2.0 21 13-33 8-28 (37)
83 2con_A RUH-035 protein, NIN on 26.5 14 0.00048 23.7 0.0 12 77-88 28-39 (79)
84 2dlq_A GLI-kruppel family memb 26.4 6.5 0.00022 24.7 -1.6 21 13-33 6-26 (124)
85 1ard_A Yeast transcription fac 26.4 4.5 0.00016 18.4 -1.9 19 15-33 3-21 (29)
86 2ysl_A Tripartite motif-contai 26.3 15 0.00052 21.4 0.2 30 56-90 37-68 (73)
87 1wfp_A Zinc finger (AN1-like) 26.1 26 0.00089 22.3 1.3 26 77-105 23-48 (74)
88 3hcg_A Peptide methionine sulf 25.5 23 0.00078 25.3 1.0 21 10-30 39-59 (146)
89 1m2k_A Silent information regu 25.3 52 0.0018 24.5 3.1 37 77-116 119-163 (249)
90 2jny_A Uncharacterized BCR; st 24.8 19 0.00065 22.2 0.4 28 76-104 7-37 (67)
91 2elq_A Zinc finger protein 406 24.8 6.3 0.00022 19.3 -1.6 21 13-33 8-28 (36)
92 2elv_A Zinc finger protein 406 24.7 6.5 0.00022 19.2 -1.6 21 13-33 8-28 (36)
93 3j20_Y 30S ribosomal protein S 24.6 27 0.00092 20.2 1.1 23 79-103 19-45 (50)
94 2ecw_A Tripartite motif-contai 24.6 18 0.00061 21.5 0.3 33 56-90 36-70 (85)
95 2kfq_A FP1; protein, de novo p 24.6 5.7 0.0002 19.2 -1.8 21 15-35 3-23 (32)
96 2elr_A Zinc finger protein 406 24.3 5.5 0.00019 19.4 -1.9 21 13-33 8-28 (36)
97 2elp_A Zinc finger protein 406 24.2 8.9 0.0003 18.8 -1.1 21 13-33 8-29 (37)
98 2e72_A POGO transposable eleme 24.0 18 0.00062 21.3 0.2 13 77-89 10-22 (49)
99 2dlo_A Thyroid receptor-intera 23.6 41 0.0014 20.1 1.9 9 81-89 17-25 (81)
100 3uej_A NPKC-delta, protein kin 23.4 29 0.00098 20.5 1.0 25 80-104 21-46 (65)
101 2elx_A Zinc finger protein 406 22.9 7.3 0.00025 18.7 -1.6 20 14-33 7-26 (35)
102 2lce_A B-cell lymphoma 6 prote 22.7 9.3 0.00032 22.0 -1.3 24 10-33 13-36 (74)
103 1iym_A EL5; ring-H2 finger, ub 22.6 23 0.00079 19.4 0.5 26 56-89 26-53 (55)
104 1qyp_A RNA polymerase II; tran 22.6 42 0.0014 19.4 1.6 18 6-23 35-52 (57)
105 1njq_A Superman protein; zinc- 22.6 7.6 0.00026 19.5 -1.6 20 14-33 6-25 (39)
106 3cng_A Nudix hydrolase; struct 22.5 25 0.00087 24.4 0.8 10 81-90 5-14 (189)
107 2csh_A Zinc finger protein 297 22.4 43 0.0015 20.4 1.8 67 12-88 8-74 (110)
108 2ecy_A TNF receptor-associated 22.4 15 0.00052 21.2 -0.4 28 56-90 32-61 (66)
109 3p8b_A DNA-directed RNA polyme 22.0 30 0.001 22.3 1.0 16 82-97 38-53 (81)
110 2ab3_A ZNF29; zinc finger prot 21.9 7.2 0.00025 17.7 -1.7 20 14-33 2-23 (29)
111 2y43_A E3 ubiquitin-protein li 21.8 26 0.00089 21.9 0.7 28 56-91 40-69 (99)
112 2k4x_A 30S ribosomal protein S 21.7 29 0.00099 20.4 0.8 24 79-103 18-44 (55)
113 1dxg_A Desulforedoxin; non-hem 21.6 45 0.0015 17.7 1.5 14 11-24 3-16 (36)
114 2eox_A Zinc finger protein 473 21.3 14 0.00048 18.9 -0.7 21 13-33 11-31 (44)
115 4ayc_A E3 ubiquitin-protein li 21.0 31 0.0011 23.1 0.9 30 56-93 70-101 (138)
116 1tfi_A Transcriptional elongat 20.9 49 0.0017 19.0 1.7 20 3-22 26-45 (50)
117 1e0f_I Haemadin, factor IIA; c 20.7 32 0.0011 20.2 0.8 21 77-100 5-33 (57)
118 2elt_A Zinc finger protein 406 20.6 8.7 0.0003 18.6 -1.6 21 13-33 8-28 (36)
119 2j6a_A Protein TRM112; transla 20.6 39 0.0013 23.8 1.4 13 75-87 105-117 (141)
120 2lcq_A Putative toxin VAPC6; P 20.5 31 0.0011 23.9 0.9 10 80-89 149-158 (165)
121 1p7a_A BF3, BKLF, kruppel-like 20.5 7.5 0.00026 19.0 -1.9 21 13-33 10-30 (37)
122 3u50_C Telomerase-associated p 20.3 36 0.0012 24.6 1.2 26 80-107 43-71 (172)
123 2epc_A Zinc finger protein 32; 20.2 9.2 0.00032 19.3 -1.6 21 13-33 10-30 (42)
No 1
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=88.85 E-value=0.13 Score=29.93 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=22.8
Q ss_pred ccccCCCCCCeeEe-cccccccccCCCCeeeC
Q 039226 3 QVHKHVANPQAIYR-CKKCRRLVASEENIVPH 33 (121)
Q Consensus 3 ~~~~~~~~~~~~yr-CrKCR~~Lf~~~~ii~H 33 (121)
++.+..-++++.|| |..|.+.++.+. |+.|
T Consensus 5 ~ii~~ple~~~~YRvC~~CgkPi~lsA-IvdH 35 (44)
T 2lo3_A 5 QLIEDPLDKPIQYRVCEKCGKPLALTA-IVDH 35 (44)
T ss_dssp CCCCCCCCCCCCEEECTTTCCEEETTT-HHHH
T ss_pred chhhcccCccccchhhcccCCcchHHH-HHHH
Confidence 34555556788999 999999998764 6666
No 2
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=86.67 E-value=0.76 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=21.8
Q ss_pred CcccccCCCCCCeeEecccccccccCCCCee
Q 039226 1 MEQVHKHVANPQAIYRCKKCRRLVASEENIV 31 (121)
Q Consensus 1 ~~~~~~~~~~~~~~yrCrKCR~~Lf~~~~ii 31 (121)
||...+ ....-.|.|..|...||.+++=.
T Consensus 2 ~e~y~~--~~~~G~Y~C~~Cg~pLF~S~~KF 30 (105)
T 3mao_A 2 MEVFQN--HFEPGVYVCAKCGYELFSSRSKY 30 (105)
T ss_dssp CCCCTT--CCCSEEEEETTTCCEEEEGGGEE
T ss_pred cccccC--CCCCEEEEcCCCCCccccCCccc
Confidence 555554 34567999999999999987543
No 3
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=82.12 E-value=0.73 Score=33.13 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=44.8
Q ss_pred CCCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEec-ccchhhh-hhccccceeEECC--C
Q 039226 9 ANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVE-SMKWMQS-VQEGFVGEKLQCM--G 84 (121)
Q Consensus 9 ~~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie-p~~Wm~~-~~~~~~~GKL~CP--k 84 (121)
+++...+.||||-..+.+++||-..+...-.+. .++=..+|+. |.. +.. ..+=+..|+|.|- +
T Consensus 22 ~~~~v~llCrkC~~~~C~g~DIrvie~~HhV~v------------~p~F~~~y~v~~~~-~~k~f~d~~~~g~I~C~~~~ 88 (145)
T 2qfd_A 22 DKENKKLLCRKCKALACYTADVRVIEECHYTVL------------GDAFKECFVSRPHP-KPKQFSSFEKRAKIFCARQN 88 (145)
T ss_dssp -CCCCEEEETTTCCEEEEGGGEEEETTTEEEEC------------STTGGGTEEEEECS-SCCCCSSEEEEEEEEECSTT
T ss_pred CccceEEEccCCCeeEEcccceeEecCCcEEec------------CcCceeeEEEcCCc-ccchhhceeCCceEEeCCcc
Confidence 346678999999999999999955432110000 0011123432 111 111 1111368999997 8
Q ss_pred CCCccceeee-ecccCCC
Q 039226 85 CKARLGSFNW-AGLQCSC 101 (121)
Q Consensus 85 C~~kLG~f~w-~G~qCsC 101 (121)
|+...|..-= .|.+.+|
T Consensus 89 Cg~~WG~~m~yk~~~lP~ 106 (145)
T 2qfd_A 89 CSHDWGIHVKYKTFEIPV 106 (145)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred cCcchhceEEEccccCce
Confidence 9999997654 3544443
No 4
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=78.29 E-value=0.68 Score=33.27 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=43.8
Q ss_pred CCCCCeeEecccccccccCCCCeee----CCCCCcchhhhhhccccCCCCCCCCceeEec--ccchhhh-hhccccceeE
Q 039226 8 VANPQAIYRCKKCRRLVASEENIVP----HEQGKGEQCFKRKKRSEMENEPAECSSLFVE--SMKWMQS-VQEGFVGEKL 80 (121)
Q Consensus 8 ~~~~~~~yrCrKCR~~Lf~~~~ii~----H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie--p~~Wm~~-~~~~~~~GKL 80 (121)
...+...+-||||-..+.++++|-. |...-+ .+|. .+|+. .+.=+.. ..+=+..|+|
T Consensus 7 ~~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~-p~F~---------------~~y~~~~~~~~~~k~f~d~~~~g~I 70 (145)
T 3eqt_A 7 FPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVN-PNFS---------------NYYNVSRDPVVINKVFKDWKPGGVI 70 (145)
T ss_dssp CCGGGCEEEETTTCCEEEEGGGEEEETTTEEEECC-GGGG---------------GGEEEEEEECCCSSCCSSEEEEEEE
T ss_pred CCchheEEECCCCCeeEEeccceEEeccceEEeeC-hhhe---------------eeEEeccCCCCCCcccccccCCcEE
Confidence 3445678999999999999999842 211100 1121 22321 1000000 1111357999
Q ss_pred ECCCCCCccceeee-ecccCCC
Q 039226 81 QCMGCKARLGSFNW-AGLQCSC 101 (121)
Q Consensus 81 ~CPkC~~kLG~f~w-~G~qCsC 101 (121)
.|-+|+...|..-- .|...+|
T Consensus 71 ~C~~Cgq~WG~~m~yk~~~LP~ 92 (145)
T 3eqt_A 71 SCRNCGEVWGLQMIYKSVKLPV 92 (145)
T ss_dssp EETTTCCEEEEEEEETTEEEEE
T ss_pred EchhhChhhHhhEEeccccCce
Confidence 99999999997544 3544444
No 5
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=75.93 E-value=0.75 Score=30.96 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=22.2
Q ss_pred cccCCCCCCeeEe-cccccccccCCCCeeeCC
Q 039226 4 VHKHVANPQAIYR-CKKCRRLVASEENIVPHE 34 (121)
Q Consensus 4 ~~~~~~~~~~~yr-CrKCR~~Lf~~~~ii~H~ 34 (121)
+.+..-+.++.|| |..|.+.|+.. .|+.|-
T Consensus 64 ii~~~Ld~~~~YRvCn~CGkPI~l~-AIvDHL 94 (96)
T 3mhs_E 64 LIEDPLDKPIQYRVCEKCGKPLALT-AIVDHL 94 (96)
T ss_dssp CCSSTTSSSCCCEEETTTCCEECGG-GTTTCC
T ss_pred hhcccCCCcccchhhhccCCceeHH-HHHHHh
Confidence 4444555668999 99999999766 477774
No 6
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=70.08 E-value=2.3 Score=30.10 Aligned_cols=76 Identities=22% Similarity=0.445 Sum_probs=42.5
Q ss_pred CCCCeeEecccccccccCCCCeee----CCCCCcchhhhhhccccCCCCCCCCceeEec-ccchh-hhhhccccceeEEC
Q 039226 9 ANPQAIYRCKKCRRLVASEENIVP----HEQGKGEQCFKRKKRSEMENEPAECSSLFVE-SMKWM-QSVQEGFVGEKLQC 82 (121)
Q Consensus 9 ~~~~~~yrCrKCR~~Lf~~~~ii~----H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie-p~~Wm-~~~~~~~~~GKL~C 82 (121)
..+.+.+-||||-..+.+++||-. |...-+ .+| ..+|+. +..=+ +...+=...|+|.|
T Consensus 7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~-p~F---------------~~~y~~~~~~~~~k~f~d~~~~g~I~C 70 (133)
T 3ga3_A 7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMT-PEF---------------KELYIVRENKALQKKCADYQINGEIIC 70 (133)
T ss_dssp CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCC-TGG---------------GGSEEEECCTTTCEECSSCEEEEEEEE
T ss_pred CcceEEEEccCCCeeEEeccceEEeccceEEeeC-hhh---------------eeeEEecCCCCccchhccccCCceEEE
Confidence 345578899999999999999842 211110 112 123431 11111 11112235799999
Q ss_pred CCCCCccceeee-ecccCCC
Q 039226 83 MGCKARLGSFNW-AGLQCSC 101 (121)
Q Consensus 83 PkC~~kLG~f~w-~G~qCsC 101 (121)
- |+...|..-- .|...+|
T Consensus 71 ~-Cgq~WG~~m~yk~~~LP~ 89 (133)
T 3ga3_A 71 K-CGQAWGTMMVHKGLDLPC 89 (133)
T ss_dssp T-TSCEEEEEEEETTEEEEE
T ss_pred e-cCChhhhhEEeccccCce
Confidence 7 9999987543 3544443
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=69.07 E-value=4.4 Score=23.78 Aligned_cols=60 Identities=18% Similarity=0.470 Sum_probs=37.9
Q ss_pred CcccccCCCCCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEec--ccchhhhhhccccce
Q 039226 1 MEQVHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVE--SMKWMQSVQEGFVGE 78 (121)
Q Consensus 1 ~~~~~~~~~~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie--p~~Wm~~~~~~~~~G 78 (121)
|++..+...+....+.|.-|...+.....++ ...|.++|=. -..|+.. .
T Consensus 1 m~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~----------------------~~~C~H~fc~~Ci~~~~~~--~----- 51 (69)
T 2kiz_A 1 MKQDGEEGTEEDTEEKCTICLSILEEGEDVR----------------------RLPCMHLFHQVCVDQWLIT--N----- 51 (69)
T ss_dssp CCCCSTTCCSTTCCCSBTTTTBCCCSSSCEE----------------------ECTTSCEEEHHHHHHHHHH--C-----
T ss_pred CCCcccCcCcCCCCCCCeeCCccccCCCcEE----------------------EeCCCCHHHHHHHHHHHHc--C-----
Confidence 4555555566667888999987664332221 1249988854 3578764 1
Q ss_pred eEECCCCCCccc
Q 039226 79 KLQCMGCKARLG 90 (121)
Q Consensus 79 KL~CPkC~~kLG 90 (121)
-.||-|.+.|-
T Consensus 52 -~~CP~Cr~~~~ 62 (69)
T 2kiz_A 52 -KKCPICRVDIE 62 (69)
T ss_dssp -SBCTTTCSBSC
T ss_pred -CCCcCcCcccc
Confidence 24999998873
No 8
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=66.46 E-value=4.7 Score=29.43 Aligned_cols=66 Identities=21% Similarity=0.419 Sum_probs=38.3
Q ss_pred CCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEecccch--hhhhhc---cccceeEECCC
Q 039226 10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKW--MQSVQE---GFVGEKLQCMG 84 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~~W--m~~~~~---~~~~GKL~CPk 84 (121)
...-.|.|..|...||.+++=..- +.|=. | |-+|++. +....+ |..--.+.|-+
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdS--GcGWP------------------S-F~~pi~~~~V~~~~D~s~gm~RtEV~C~~ 127 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHS--GCGWP------------------S-YFKPIDGEVIDEKMDYTHGMTRVEVRCNQ 127 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCC--CSSSC------------------E-ESSCSSTTSEEEEEECGGGCCEEEEEETT
T ss_pred CCCeEEEccCCCccccCCchhccC--CCCCc------------------c-cCcccCCCceEEeECCCCCcEEEEEEeCC
Confidence 345799999999999998743221 11111 2 3333321 221111 22234589999
Q ss_pred CCCccceeeeec
Q 039226 85 CKARLGSFNWAG 96 (121)
Q Consensus 85 C~~kLG~f~w~G 96 (121)
|++.||.-=-.|
T Consensus 128 Cg~HLGHVF~DG 139 (164)
T 3cxk_A 128 CGAHLGHVFEDG 139 (164)
T ss_dssp TCCEEEEEESCS
T ss_pred CCCccCcccCCC
Confidence 999999854455
No 9
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.97 E-value=2.7 Score=30.34 Aligned_cols=66 Identities=27% Similarity=0.482 Sum_probs=38.1
Q ss_pred CCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEecccch--hhhhhc---cccceeEECCC
Q 039226 10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKW--MQSVQE---GFVGEKLQCMG 84 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~~W--m~~~~~---~~~~GKL~CPk 84 (121)
...-.|.|..|...||.+++=... +.|=. | |-+|++. +....+ |..--.+.|-+
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdS--g~GWP------------------S-F~~pi~~~~V~~~~D~s~gm~RtEV~C~~ 115 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDS--GTGWP------------------S-FYDVVSEHNIKLREDRSLGMVRCEVLCAR 115 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCS--TTCCS------------------E-ESCCSCTTSEECCCCBTTSSCEEEEEETT
T ss_pred CCCEEEEecCCCCcccCCcccccC--CCCCc------------------c-cCcccCCCceEEeeCCCCCceEEEEEeCC
Confidence 345699999999999998743221 11111 2 3333322 222111 22234599999
Q ss_pred CCCccceeeeec
Q 039226 85 CKARLGSFNWAG 96 (121)
Q Consensus 85 C~~kLG~f~w~G 96 (121)
|++.||.-=-.|
T Consensus 116 Cg~HLGHVF~DG 127 (151)
T 2k8d_A 116 CDAHLGHVFDDG 127 (151)
T ss_dssp EEEEEEEEEECS
T ss_pred CCCcCCcccCCC
Confidence 999999843355
No 10
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=65.27 E-value=2.5 Score=31.73 Aligned_cols=29 Identities=38% Similarity=0.857 Sum_probs=16.4
Q ss_pred eEECCCCCCc--------cce--eeeecccC-CCCCeeec
Q 039226 79 KLQCMGCKAR--------LGS--FNWAGLQC-SCGAWATP 107 (121)
Q Consensus 79 KL~CPkC~~k--------LG~--f~w~G~qC-sCG~wv~P 107 (121)
+|.||.|++. .+. ..++|.+| .|++-+.|
T Consensus 22 ~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~ 61 (206)
T 3flo_B 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTP 61 (206)
T ss_dssp EEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCH
T ss_pred EEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCCH
Confidence 5777777631 111 45567777 37775543
No 11
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=63.76 E-value=3.2 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.736 Sum_probs=23.7
Q ss_pred ceeEECCCCCCcc-ceeeeecccCC-CCCeee
Q 039226 77 GEKLQCMGCKARL-GSFNWAGLQCS-CGAWAT 106 (121)
Q Consensus 77 ~GKL~CPkC~~kL-G~f~w~G~qCs-CG~wv~ 106 (121)
.-.|.|..|+++- ..|.|.|.+|+ ||.+-+
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 4568999999874 45788899996 998764
No 12
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=63.66 E-value=3.2 Score=29.22 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=41.6
Q ss_pred CCeeEecccccccccCCCCeee----CCCCCcchhhhhhccccCCCCCCCCceeEec-ccchhhhhhccccceeEECC--
Q 039226 11 PQAIYRCKKCRRLVASEENIVP----HEQGKGEQCFKRKKRSEMENEPAECSSLFVE-SMKWMQSVQEGFVGEKLQCM-- 83 (121)
Q Consensus 11 ~~~~yrCrKCR~~Lf~~~~ii~----H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie-p~~Wm~~~~~~~~~GKL~CP-- 83 (121)
.+..+-||||-..+.+++||-. |...-+ .+| ..+|+- |..==+...+=+..|+|.|-
T Consensus 4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~-p~F---------------~~~y~~~~~~~~k~f~d~~~~g~I~C~~~ 67 (131)
T 4a2v_A 4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLG-EAF---------------KERYTTKPHKKPMQFDGFEKKSKMYCRNN 67 (131)
T ss_dssp -CCEEEETTTCCEEEEGGGEEEETTTEEEECS-SGG---------------GGGEEEEECCCCCCTTSEEEEEEEEESCT
T ss_pred cceEEEccCCCeeEEeccceEEeecceEEeeC-hhh---------------eeeEEecCCCCCchhhcccCCcEEEeCcc
Confidence 3568899999999999999832 211100 012 123332 11000001122358999998
Q ss_pred CCCCccceeee-eccc-CCC
Q 039226 84 GCKARLGSFNW-AGLQ-CSC 101 (121)
Q Consensus 84 kC~~kLG~f~w-~G~q-CsC 101 (121)
+|+...|..-- .|.. .+|
T Consensus 68 ~Cg~~WG~~m~yk~~~~LP~ 87 (131)
T 4a2v_A 68 NCQHDWGITVKYLTFDNLPV 87 (131)
T ss_dssp TTCCEEEEEEEETTEEEEEE
T ss_pred ccChhhhhhEeecCcccCce
Confidence 89999987543 3544 443
No 13
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.19 E-value=3.5 Score=26.76 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.8
Q ss_pred ecCCcc
Q 039226 112 HKSRLD 117 (121)
Q Consensus 112 ~kskVD 117 (121)
.|+||.
T Consensus 62 Skkrv~ 67 (81)
T 2jrp_A 62 SKKRVN 67 (81)
T ss_dssp CTTSSE
T ss_pred ecceEE
Confidence 344543
No 14
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=60.98 E-value=4.6 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=15.6
Q ss_pred eEECCCCCCccceeeeecccC-CCCCee
Q 039226 79 KLQCMGCKARLGSFNWAGLQC-SCGAWA 105 (121)
Q Consensus 79 KL~CPkC~~kLG~f~w~G~qC-sCG~wv 105 (121)
.-.|..|++.+---.-.+.+| -||..|
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCcEE
Confidence 355777777664222234677 477766
No 15
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.69 E-value=2.8 Score=22.92 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=13.8
Q ss_pred cceeEECCCCCCccceee
Q 039226 76 VGEKLQCMGCKARLGSFN 93 (121)
Q Consensus 76 ~~GKL~CPkC~~kLG~f~ 93 (121)
.+| +.||-|...|++++
T Consensus 3 ~EG-FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEG-FICPQCMKSLGSAD 19 (34)
T ss_dssp SEE-EECTTTCCEESSHH
T ss_pred Ccc-cCCcHHHHHcCCHH
Confidence 467 88999999988754
No 16
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=60.63 E-value=3 Score=29.17 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.4
Q ss_pred cccceeEECCCCCCc
Q 039226 74 GFVGEKLQCMGCKAR 88 (121)
Q Consensus 74 ~~~~GKL~CPkC~~k 88 (121)
...+|+|.||.|+-.
T Consensus 94 ~V~EG~L~Cp~cgr~ 108 (125)
T 3q87_A 94 DVVEGSLRCDMCGLI 108 (125)
T ss_dssp EEEEEEEEETTTCCE
T ss_pred EEEEEEEECCCCCCE
Confidence 357999999999864
No 17
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=57.08 E-value=2.2 Score=29.59 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCeeEecccccccccCCCCeee----CCCCCcchhhhhhccccCCCCCCCCceeEec-ccchhhhhhccccceeEECC--
Q 039226 11 PQAIYRCKKCRRLVASEENIVP----HEQGKGEQCFKRKKRSEMENEPAECSSLFVE-SMKWMQSVQEGFVGEKLQCM-- 83 (121)
Q Consensus 11 ~~~~yrCrKCR~~Lf~~~~ii~----H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie-p~~Wm~~~~~~~~~GKL~CP-- 83 (121)
.+..+-||||-..+.+++||-. |...-+ .+|. .+|+- |..=-+...+=+..|+|.|-
T Consensus 2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~-p~F~---------------~~y~~~~~~~~k~f~d~~~~g~I~C~~~ 65 (121)
T 3lrr_A 2 ENKKLLCRKCKALACYTADVRVIEESHYTVLG-DAFK---------------ECFVSRPHPKPKQFSSFEKRAKIFCARQ 65 (121)
T ss_dssp CCEEEEETTTCCEEEEGGGEEEETTTEEEECS-HHHH---------------TTEEEEECSSCCEETTEEEEEEEEECST
T ss_pred CCEEEECCCCCeEEEeccceEEeecceEEeeC-hhhe---------------eeEEecCCCCCchhhcccCCcEEEeCcc
Confidence 4678899999999999999832 211100 1221 12321 11000001112358999998
Q ss_pred CCCCccceeee-ecccCCC
Q 039226 84 GCKARLGSFNW-AGLQCSC 101 (121)
Q Consensus 84 kC~~kLG~f~w-~G~qCsC 101 (121)
+|+...|..-- .|...+|
T Consensus 66 ~Cg~~WG~~m~yk~~~LP~ 84 (121)
T 3lrr_A 66 NCSHDWGIHVKYKTFEIPV 84 (121)
T ss_dssp TTCCEEEEEEEETTEEEEE
T ss_pred ccChhhhheEEeccccCce
Confidence 89999997644 3555544
No 18
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.86 E-value=5.8 Score=24.01 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.0
Q ss_pred eeEECCCCCCc
Q 039226 78 EKLQCMGCKAR 88 (121)
Q Consensus 78 GKL~CPkC~~k 88 (121)
|+++|..|-.+
T Consensus 2 g~~yC~~cy~~ 12 (80)
T 2cuq_A 2 SSGSSGPCYEN 12 (80)
T ss_dssp CCCSCCCCCCC
T ss_pred CcEEcHHHHcc
Confidence 34444444444
No 19
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.56 E-value=5 Score=24.50 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=4.5
Q ss_pred CCCCCCccc
Q 039226 82 CMGCKARLG 90 (121)
Q Consensus 82 CPkC~~kLG 90 (121)
|..|+..|.
T Consensus 18 C~~C~~~I~ 26 (82)
T 2ehe_A 18 CAECQQLIG 26 (82)
T ss_dssp CTTTCCBCC
T ss_pred CccCCCccc
Confidence 445555543
No 20
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=55.30 E-value=4 Score=24.43 Aligned_cols=26 Identities=42% Similarity=0.691 Sum_probs=17.8
Q ss_pred eeEECCCCCCccceeeeecccCC---CCCe
Q 039226 78 EKLQCMGCKARLGSFNWAGLQCS---CGAW 104 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w~G~qCs---CG~w 104 (121)
.-|.||.|++.| .|+-....|+ ||..
T Consensus 9 ~iL~CP~c~~~L-~~~~~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 9 EILACPACHAPL-EERDAELICTGQDCGLA 37 (56)
T ss_dssp TSCCCSSSCSCE-EEETTEEEECSSSCCCE
T ss_pred hheeCCCCCCcc-eecCCEEEcCCcCCCcE
Confidence 357899999988 3443336787 8763
No 21
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=58.29 E-value=2.8 Score=19.00 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=16.8
Q ss_pred eEecccccccccCCCCeeeCC
Q 039226 14 IYRCKKCRRLVASEENIVPHE 34 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H~ 34 (121)
.|.|..|.+......++..|.
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHI 22 (26)
Confidence 378999998887777887774
No 22
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=50.70 E-value=12 Score=29.87 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=37.9
Q ss_pred CCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEeccc--chhhhhhc---cccceeEECCC
Q 039226 10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESM--KWMQSVQE---GFVGEKLQCMG 84 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~--~Wm~~~~~---~~~~GKL~CPk 84 (121)
...-.|.|..|...||.+++=... +.|=. | |-+|+ .-+....+ |..--.+.|-+
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdS--g~GWP------------------S-F~~~i~~~~v~~~~D~s~gm~RtEv~c~~ 263 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFAS--GCGWP------------------S-FSRPLSKELIHYYKDLSHGMERIEVRSRS 263 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCC--CSSSC------------------E-ESSCSSGGGEEEEEECCTTCCEEEEEESS
T ss_pred CCCeEEEecCCCccccCCCccccC--CCCCc------------------c-cCcccCCCceEEeecCCCCcEEEEEECCC
Confidence 355799999999999998743221 11111 2 33332 11221111 22344699999
Q ss_pred CCCccce-eeeec
Q 039226 85 CKARLGS-FNWAG 96 (121)
Q Consensus 85 C~~kLG~-f~w~G 96 (121)
|++.||. |+ .|
T Consensus 264 c~~HLGHVF~-DG 275 (313)
T 3e0m_A 264 GSAHLGHVFT-DG 275 (313)
T ss_dssp SCCEEEEEES-CS
T ss_pred CCCccCcccC-CC
Confidence 9999997 54 45
No 23
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.91 E-value=6.8 Score=23.22 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=18.6
Q ss_pred cceeEECCCCCCccceeeeecccCC-CCCe
Q 039226 76 VGEKLQCMGCKARLGSFNWAGLQCS-CGAW 104 (121)
Q Consensus 76 ~~GKL~CPkC~~kLG~f~w~G~qCs-CG~w 104 (121)
+-.+-.||+|++++|.=.| +|. ||.-
T Consensus 11 ~~~k~iCpkC~a~~~~gaw---~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAK---KCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCEECTTCS---SCSSSSSC
T ss_pred HhCCccCCCCCCcCCCCce---ecCCCCCc
Confidence 4567889999999874444 453 7864
No 24
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=51.50 E-value=4.4 Score=18.70 Aligned_cols=21 Identities=14% Similarity=0.494 Sum_probs=16.7
Q ss_pred eEecccccccccCCCCeeeCC
Q 039226 14 IYRCKKCRRLVASEENIVPHE 34 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H~ 34 (121)
.|.|..|.+......++..|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~ 22 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHV 22 (29)
Confidence 378999998877777887774
No 25
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=44.45 E-value=6.5 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.7
Q ss_pred cceeEECCCCCCccceeeeecccCC-CCCeeece
Q 039226 76 VGEKLQCMGCKARLGSFNWAGLQCS-CGAWATPA 108 (121)
Q Consensus 76 ~~GKL~CPkC~~kLG~f~w~G~qCs-CG~wv~Pa 108 (121)
.+|+++|..|-.++ .|.+|. |+.-|.|.
T Consensus 51 ~~g~~yC~~cy~~~-----~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 51 KDNKILCNKCTTRE-----DSPKCKGCFKAIVAG 79 (101)
T ss_dssp ETTEEECHHHHTTC-----CCCBCSSSCCBCCSS
T ss_pred cCCEEEChhHhhhh-----cCCccccCCCccccC
Confidence 57899998888776 577885 99999875
No 26
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=50.13 E-value=4.8 Score=18.52 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=16.9
Q ss_pred eEecccccccccCCCCeeeCC
Q 039226 14 IYRCKKCRRLVASEENIVPHE 34 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H~ 34 (121)
.|.|..|.+......++..|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~ 23 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHV 23 (30)
Confidence 488999998877777787774
No 27
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=44.16 E-value=13 Score=23.37 Aligned_cols=23 Identities=30% Similarity=0.871 Sum_probs=13.7
Q ss_pred EECCCCCCccceeeeec---ccCCCCCee
Q 039226 80 LQCMGCKARLGSFNWAG---LQCSCGAWA 105 (121)
Q Consensus 80 L~CPkC~~kLG~f~w~G---~qCsCG~wv 105 (121)
+-|| |+.-+ |.=.| -+|+||+-+
T Consensus 5 v~C~-C~~~~--~~~~~~kT~~C~CG~~~ 30 (71)
T 1gh9_A 5 FRCD-CGRAL--YSREGAKTRKCVCGRTV 30 (71)
T ss_dssp EEET-TSCCE--EEETTCSEEEETTTEEE
T ss_pred EECC-CCCEE--EEcCCCcEEECCCCCee
Confidence 5688 87652 22234 378888854
No 28
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.50 E-value=13 Score=22.39 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=3.9
Q ss_pred CCCCCCcc
Q 039226 82 CMGCKARL 89 (121)
Q Consensus 82 CPkC~~kL 89 (121)
|++|+..|
T Consensus 18 C~~C~~~I 25 (80)
T 1x3h_A 18 CGGCNRPV 25 (80)
T ss_dssp CTTTCCBC
T ss_pred cccCCCee
Confidence 44555444
No 29
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=42.36 E-value=13 Score=22.16 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=5.6
Q ss_pred ECCCCCCccc
Q 039226 81 QCMGCKARLG 90 (121)
Q Consensus 81 ~CPkC~~kLG 90 (121)
.|++|+..|.
T Consensus 17 ~C~~C~~~I~ 26 (77)
T 2egq_A 17 KCAGCKNPIT 26 (77)
T ss_dssp CCSSSCCCCC
T ss_pred cCcccCCccc
Confidence 3556665554
No 30
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=42.23 E-value=9.8 Score=25.49 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=5.2
Q ss_pred eEECCCCCCc
Q 039226 79 KLQCMGCKAR 88 (121)
Q Consensus 79 KL~CPkC~~k 88 (121)
.+.||.|+.+
T Consensus 16 H~lCrRCG~~ 25 (97)
T 2zkr_2 16 HTLCRRCGSK 25 (97)
T ss_dssp EECCTTTCSS
T ss_pred CCcCCCCCCc
Confidence 3455555554
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.95 E-value=8.4 Score=29.03 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCCceeEec-ccchhhhhhccccceeEECCCCCCcc
Q 039226 54 PAECSSLFVE-SMKWMQSVQEGFVGEKLQCMGCKARL 89 (121)
Q Consensus 54 ~~~C~~~Fie-p~~Wm~~~~~~~~~GKL~CPkC~~kL 89 (121)
...|..-|+. |+..+..+.. -..-+.||.|+.-|
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~--~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLT--SGDMITCPYCGRIL 232 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHH--SSSCEECTTTCCEE
T ss_pred CCccCCCCeeeCHHHHHHHHC--CCCEEECCCCCeeE
Confidence 4579988886 7777776533 24569999999876
No 32
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.79 E-value=10 Score=19.76 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=10.7
Q ss_pred eeEECCCCCCccce
Q 039226 78 EKLQCMGCKARLGS 91 (121)
Q Consensus 78 GKL~CPkC~~kLG~ 91 (121)
-|+.||.|.+.+-.
T Consensus 2 ~k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 2 SDFCCPKCQYQAPD 15 (28)
T ss_dssp CCEECTTSSCEESS
T ss_pred CcccCccccccCcC
Confidence 37899999987643
No 33
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=41.53 E-value=9.6 Score=23.14 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=13.6
Q ss_pred ECCCCCCccceeeeecc
Q 039226 81 QCMGCKARLGSFNWAGL 97 (121)
Q Consensus 81 ~CPkC~~kLG~f~w~G~ 97 (121)
.||+|++-- +-+|.|+
T Consensus 15 ~CpnC~~~t-t~~~~G~ 30 (59)
T 3lpe_B 15 ICPICHSPT-SENWIGL 30 (59)
T ss_dssp BCTTTCCBE-ESCEECE
T ss_pred CCCCCCCCc-cCCEeeE
Confidence 499999876 9999995
No 34
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=41.22 E-value=16 Score=25.48 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCCeeEecccccccccCCCCe
Q 039226 10 NPQAIYRCKKCRRLVASEENI 30 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~i 30 (121)
.+.-.|.|..|...||.+++=
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~K 36 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSK 36 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTS
T ss_pred CCCEEEEeCCCCCccccCccc
Confidence 456799999999999998743
No 35
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=40.53 E-value=13 Score=20.96 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=15.1
Q ss_pred eEECCCCCCccceeeeecccCC-CCCee
Q 039226 79 KLQCMGCKARLGSFNWAGLQCS-CGAWA 105 (121)
Q Consensus 79 KL~CPkC~~kLG~f~w~G~qCs-CG~wv 105 (121)
--.|--|+..| |.|.+|. |+..+
T Consensus 14 pt~C~~C~~~l----~qG~~C~~C~~~~ 37 (52)
T 1faq_A 14 LAFCDICQKFL----LNGFRCQTCGYKF 37 (52)
T ss_dssp CEECTTSSSEE----CSEEECTTTTCCB
T ss_pred CcCCCCccccc----ccCCEeCCCCCeE
Confidence 35677776655 5888885 66544
No 36
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=40.35 E-value=15 Score=25.59 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.2
Q ss_pred CCeeEecccccccccCCCCe
Q 039226 11 PQAIYRCKKCRRLVASEENI 30 (121)
Q Consensus 11 ~~~~yrCrKCR~~Lf~~~~i 30 (121)
+.-.|.|+.|...||.+++=
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~K 36 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSK 36 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSC
T ss_pred CCEEEEecCCCCcccccCCc
Confidence 45799999999999998754
No 37
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.06 E-value=13 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.953 Sum_probs=19.3
Q ss_pred eeEECCCCCCccceeeeecccCCCCCee
Q 039226 78 EKLQCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
.+-.|..|+.|||- .|.+|.||...
T Consensus 24 ~~nRC~~CrKkvgL---~gf~CrCg~~F 48 (74)
T 1wfl_A 24 KKNRCFMCRKKVGL---TGFDCRCGNLF 48 (74)
T ss_dssp CTTBCSSSCCBCGG---GCEECTTSCEE
T ss_pred cCCcChhhCCcccc---cCeecCCCCEe
Confidence 34569899999984 47889999754
No 38
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.64 E-value=3.4 Score=18.75 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=14.3
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H 21 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAH 21 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHH
Confidence 37899998876666666655
No 39
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=39.17 E-value=9 Score=24.67 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCceeEec--ccchhhhhhccccceeEECCCCCCcccee
Q 039226 55 AECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLGSF 92 (121)
Q Consensus 55 ~~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG~f 92 (121)
..|.++|=. -..|+.. +...++..||-|.+.++.-
T Consensus 59 ~~C~H~Fh~~Ci~~wl~~---~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMYCN---GNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSSCCEECHHHHHHHHHH---TCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcccHHHHHHHHHc---ccCCCCCcCCCCCCccCCC
Confidence 469998843 3588864 2224578999999988754
No 40
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.93 E-value=2.6 Score=19.28 Aligned_cols=20 Identities=20% Similarity=0.645 Sum_probs=14.1
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H 21 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRH 21 (29)
T ss_dssp CEECTTTSCEESCHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHH
Confidence 37899998876666566555
No 41
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=37.84 E-value=12 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.8
Q ss_pred ccccceeEECCCCCCccce
Q 039226 73 EGFVGEKLQCMGCKARLGS 91 (121)
Q Consensus 73 ~~~~~GKL~CPkC~~kLG~ 91 (121)
++....+|.||.|+++|..
T Consensus 6 ~~~N~~~i~C~~C~s~il~ 24 (115)
T 1hxr_A 6 EGRNRKAVLCQRCGSRVLQ 24 (115)
T ss_dssp TSBBSSCEEETTTCCEEEC
T ss_pred CCcccCeEECCCCCCEEec
Confidence 4567789999999999874
No 42
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.76 E-value=15 Score=23.92 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=19.5
Q ss_pred eEECCCCCCccceeeeecccCCCCCee
Q 039226 79 KLQCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 79 KL~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
+-.|..|+.|||-. .|.+|.||...
T Consensus 25 ~~rC~~C~kkvgl~--~~f~CrCg~~F 49 (85)
T 1wff_A 25 MKHCFLCGKKTGLA--TSFECRCGNNF 49 (85)
T ss_dssp CCBCSSSCCBCSSS--SCEECTTCCEE
T ss_pred CccchhhCCeeccc--CCeEcCCCCEe
Confidence 45698999999843 47899999865
No 43
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.62 E-value=14 Score=22.94 Aligned_cols=26 Identities=31% Similarity=0.796 Sum_probs=19.9
Q ss_pred ceeEECCCCCCccceeeeecccCCCCCee
Q 039226 77 GEKLQCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
..+..|..|+.|||- .|.+|.||...
T Consensus 13 ~~~~rC~~C~kkvgl---~~f~CrCg~~F 38 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGL---TGFMCRCGTTF 38 (64)
T ss_dssp SSCCCCTTTCCCCCT---TCEECSSSCEE
T ss_pred CcCCcChhhCCccCc---cCEEeecCCEe
Confidence 345679899999984 37889998754
No 44
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=37.04 E-value=2.9 Score=19.22 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=14.5
Q ss_pred EecccccccccCCCCeeeC
Q 039226 15 YRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 15 yrCrKCR~~Lf~~~~ii~H 33 (121)
|.|..|.+......++..|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H 21 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTH 21 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHH
Confidence 7899998877666666665
No 45
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=36.80 E-value=3.8 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.590 Sum_probs=15.1
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H 21 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLH 21 (29)
T ss_dssp CEECSSSSCEESCSHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHH
Confidence 38899998877666666666
No 46
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.97 E-value=8.8 Score=23.04 Aligned_cols=70 Identities=10% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEecccchhhhhhccccceeEECCCCCCcc
Q 039226 11 PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARL 89 (121)
Q Consensus 11 ~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~~Wm~~~~~~~~~GKL~CPkC~~kL 89 (121)
....|.|..|.+...+..++..|...-. ....-.-..|...|.........+.....+....|+.|+...
T Consensus 5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~---------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHT---------GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74 (96)
T ss_dssp CCCCCCBTTTTBCCCCHHHHHHHGGGCC---------CCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHhcC---------CCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 3446999999998877777777743110 000011345777787654444433222234568899887643
No 47
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.93 E-value=3 Score=19.10 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=14.5
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H 22 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKH 22 (27)
T ss_dssp CEECSSSSCEESSHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHH
Confidence 48899998877666555555
No 48
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.82 E-value=2.5 Score=19.19 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=13.9
Q ss_pred EecccccccccCCCCeeeC
Q 039226 15 YRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 15 yrCrKCR~~Lf~~~~ii~H 33 (121)
|.|..|.+......++..|
T Consensus 2 ~~C~~C~k~f~~~~~l~~H 20 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRH 20 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHH
T ss_pred ccCCCCCCcCCCHHHHHHH
Confidence 7899998877666666555
No 49
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=35.43 E-value=23 Score=21.62 Aligned_cols=21 Identities=29% Similarity=0.846 Sum_probs=15.6
Q ss_pred EECCCCCCccceeeeecccCC-CCCee
Q 039226 80 LQCMGCKARLGSFNWAGLQCS-CGAWA 105 (121)
Q Consensus 80 L~CPkC~~kLG~f~w~G~qCs-CG~wv 105 (121)
-.||+| |.|.. -..|+ ||.-.
T Consensus 6 r~C~~C----g~YTL-k~~CP~CG~~t 27 (60)
T 2aus_D 6 RKCPKC----GRYTL-KETCPVCGEKT 27 (60)
T ss_dssp EECTTT----CCEES-SSBCTTTCSBC
T ss_pred eECCCC----CCEEc-cccCcCCCCcc
Confidence 469999 77777 45798 99754
No 50
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.00 E-value=3.3 Score=18.98 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=14.7
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H 22 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRH 22 (30)
T ss_dssp CEECTTTCCEESCHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHH
Confidence 48899998876666666555
No 51
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.65 E-value=19 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.868 Sum_probs=19.7
Q ss_pred ceeEECCCCCCccceeeeecccCCCCCee
Q 039226 77 GEKLQCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
..+..|..|+.|||- .|.+|-||...
T Consensus 13 ~~~~rC~~C~kkvgl---~~f~CrCg~~F 38 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGV---MGFKCKCGSTF 38 (64)
T ss_dssp CCSCSCTTTCCCCTT---SCEECTTSCEE
T ss_pred CcCCcChhhCCcccc---cCeEeecCCEe
Confidence 345678899999984 37789998754
No 52
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=33.35 E-value=27 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=15.2
Q ss_pred EECCCCCCccceeeeecccCC-CCCee
Q 039226 80 LQCMGCKARLGSFNWAGLQCS-CGAWA 105 (121)
Q Consensus 80 L~CPkC~~kLG~f~w~G~qCs-CG~wv 105 (121)
..||+| |.|.. ..+|+ ||.-.
T Consensus 7 r~C~~C----gvYTL-k~~CP~CG~~T 28 (60)
T 2apo_B 7 KKCPKC----GLYTL-KEICPKCGEKT 28 (60)
T ss_dssp EECTTT----CCEES-SSBCSSSCSBC
T ss_pred eeCCCC----CCEec-cccCcCCCCcC
Confidence 468888 77777 45787 88754
No 53
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=33.20 E-value=15 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=19.8
Q ss_pred hccccceeE-ECCCCCCccceeeeecccCCCCCee
Q 039226 72 QEGFVGEKL-QCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 72 ~~~~~~GKL-~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
.++.+-|.| -||.|+ |.+-++|..=.|.-++
T Consensus 70 ADgm~FGal~~CP~C~---G~l~y~~~~Y~C~G~i 101 (160)
T 2riq_A 70 ADGMVFGALLPCEECS---GQLVFKSDAYYCTGDV 101 (160)
T ss_dssp HHHHHHCEECCCTTTC---CCEEEETTEEEECCEE
T ss_pred HHHHHhCCCCCCCCCC---CEEEEeCCeEEECCCC
Confidence 355667777 799999 6666666433344444
No 54
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=32.74 E-value=20 Score=25.56 Aligned_cols=21 Identities=5% Similarity=0.099 Sum_probs=17.5
Q ss_pred CCCeeEecccccccccCCCCe
Q 039226 10 NPQAIYRCKKCRRLVASEENI 30 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~i 30 (121)
...-.|.|..|...||.+++=
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~K 58 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDK 58 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTB
T ss_pred CCCEEEEeCCCCcccccCccc
Confidence 356799999999999998743
No 55
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.05 E-value=3.5 Score=19.04 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=14.4
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H 22 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAH 22 (27)
T ss_dssp TEEETTTTEEESCHHHHHHH
T ss_pred CcCCCCCCcccCCHHHHHHH
Confidence 38899998876665555555
No 56
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.77 E-value=3.8 Score=18.74 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=14.6
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H 22 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETH 22 (28)
T ss_dssp SEECSSSCCEESCHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHH
Confidence 48899998876666666555
No 57
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=31.72 E-value=32 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.524 Sum_probs=26.4
Q ss_pred ceeEECCCCCCccceeeee----------cccCC-CCCeeeceEEEecCCc
Q 039226 77 GEKLQCMGCKARLGSFNWA----------GLQCS-CGAWATPAFQLHKSRL 116 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~----------G~qCs-CG~wv~Paf~l~kskV 116 (121)
-.++.|.+|+.. |++. .-.|+ ||..+.|.+-+.--.+
T Consensus 119 ~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~l 166 (246)
T 1yc5_A 119 VEEYYCVRCEKK---YTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENL 166 (246)
T ss_dssp EEEEEETTTCCE---EEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBC
T ss_pred cceeEcCCCCCC---CcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCC
Confidence 357789999884 5551 24796 9999999887654443
No 58
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=30.56 E-value=25 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.565 Sum_probs=20.0
Q ss_pred cccceeEECCCCCCccceeee--ec-ccC-CCCCee
Q 039226 74 GFVGEKLQCMGCKARLGSFNW--AG-LQC-SCGAWA 105 (121)
Q Consensus 74 ~~~~GKL~CPkC~~kLG~f~w--~G-~qC-sCG~wv 105 (121)
+...-+.-||.|+.+ ..|.. .| ..| +||..+
T Consensus 9 ~~~~~~~~CP~Cg~~-d~~~~~~dg~~~C~~Cg~~~ 43 (255)
T 1nui_A 9 SVFLYHIPCDNCGSS-DGNSLFSDGHTFCYVCEKWT 43 (255)
T ss_dssp -CEEEEECCSSSCCS-SCEEEETTSCEEETTTCCEE
T ss_pred cceecCCcCCCCCCC-CCceEeCCCCeecccCCCcC
Confidence 445568899999884 23332 34 578 599874
No 59
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.11 E-value=38 Score=18.38 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=19.6
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLG 90 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG 90 (121)
.|.+.|=. -.+|+.. ...||-|.+.|-
T Consensus 26 ~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYEEMLKE--------GYRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHHHHHHH--------TCCCTTSCCSSC
T ss_pred CCCCcccHHHHHHHHHc--------CCcCCCCCCcCC
Confidence 59988865 3577765 167999998873
No 60
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.00 E-value=14 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=18.2
Q ss_pred ceeEECCCCCCccceeee-ec-ccC-CCCCe
Q 039226 77 GEKLQCMGCKARLGSFNW-AG-LQC-SCGAW 104 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w-~G-~qC-sCG~w 104 (121)
--.|.||.|++.| .|+= .| ..| +||..
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 6 LEILVCPLCKGPL-VFDKSKDELICKGDRLA 35 (68)
T ss_dssp EEECBCTTTCCBC-EEETTTTEEEETTTTEE
T ss_pred hhheECCCCCCcC-eEeCCCCEEEcCCCCcE
Confidence 3468999999988 3332 23 578 48864
No 61
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=29.72 E-value=8 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=16.6
Q ss_pred hccccceeEECCCCCC-ccceeee
Q 039226 72 QEGFVGEKLQCMGCKA-RLGSFNW 94 (121)
Q Consensus 72 ~~~~~~GKL~CPkC~~-kLG~f~w 94 (121)
.+.|+....+||.|++ .|-.|.=
T Consensus 27 TE~Wv~~n~yCPnCG~~~l~~f~n 50 (257)
T 4esj_A 27 TEDWVYRQSYCPNCGNNPLNHFEN 50 (257)
T ss_dssp HHHHHHHHCCCTTTCCSSCEEC--
T ss_pred hHHHHHHCCcCCCCCChhhhhccC
Confidence 3567778899999999 5866654
No 62
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.63 E-value=13 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=17.3
Q ss_pred eeEECCCCCCccceeee-ec-ccC-CCCCe
Q 039226 78 EKLQCMGCKARLGSFNW-AG-LQC-SCGAW 104 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w-~G-~qC-sCG~w 104 (121)
..|.||.|++.| .|+= .| ..| +||..
T Consensus 7 eiL~CP~ck~~L-~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 7 DILACPICKGPL-KLSADKTELISKGAGLA 35 (69)
T ss_dssp GTCCCTTTCCCC-EECTTSSEEEETTTTEE
T ss_pred hheeCCCCCCcC-eEeCCCCEEEcCCCCcE
Confidence 348899999988 3332 23 578 48764
No 63
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.54 E-value=4.7 Score=19.60 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=16.2
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H 26 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARH 26 (35)
T ss_dssp CEECSSSCCEESSHHHHHHH
T ss_pred CeeCCCCCcccCCHHHHHHH
Confidence 59999999988777777666
No 64
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=29.49 E-value=20 Score=25.78 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.0
Q ss_pred CCCeeEecccccccccCCCC
Q 039226 10 NPQAIYRCKKCRRLVASEEN 29 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ 29 (121)
...-.|.|..|...||.+++
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~ 65 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNA 65 (154)
T ss_dssp CSSEEEEETTTCCEEEEECT
T ss_pred CCCEEEEccCCCCccccCcc
Confidence 34579999999999999874
No 65
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.48 E-value=14 Score=22.90 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=17.3
Q ss_pred eeEECCCCCCccceeee-ec-ccC-CCCCe
Q 039226 78 EKLQCMGCKARLGSFNW-AG-LQC-SCGAW 104 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w-~G-~qC-sCG~w 104 (121)
-.|.||.|++.| .|+= .| ..| +||..
T Consensus 7 ~iL~CP~ck~~L-~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 7 DILVCPVTKGRL-EYHQDKQELWSRQAKLA 35 (68)
T ss_dssp CCCBCSSSCCBC-EEETTTTEEEETTTTEE
T ss_pred hheECCCCCCcC-eEeCCCCEEEcCCCCcE
Confidence 458999999988 3332 23 578 48763
No 66
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=29.43 E-value=40 Score=26.10 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=24.1
Q ss_pred eeEECCCCCCccceeeee--------------cccCCCCCeeeceEEEec
Q 039226 78 EKLQCMGCKARLGSFNWA--------------GLQCSCGAWATPAFQLHK 113 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w~--------------G~qCsCG~wv~Paf~l~k 113 (121)
.++.|.+|+.+ |.+. .-.|+||..+.|.|-+.=
T Consensus 153 ~~~~C~~C~~~---~~~~~~~~~~~~~~~~~~~P~C~Cgg~lrPdVV~FG 199 (290)
T 3u31_A 153 FEAVCCTCNKI---VKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFG 199 (290)
T ss_dssp EEEEETTTCCE---EECCTGGGSTTSSTTTSSSCBCTTSCBEEEEECCBT
T ss_pred CcceeCCCCCc---CChhHhhhcccccccccCCCCCCCCCEECCeEEEcC
Confidence 57899999965 3331 347999999999876653
No 67
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=29.27 E-value=20 Score=21.47 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=19.7
Q ss_pred eeEECCCCCCccceeeeecccCC-CCCee
Q 039226 78 EKLQCMGCKARLGSFNWAGLQCS-CGAWA 105 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w~G~qCs-CG~wv 105 (121)
.--.|-.|+.++| |.=.|.+|. |+..+
T Consensus 18 ~~~~C~~Cg~~i~-~gkq~~kC~dC~~~c 45 (61)
T 4b6d_A 18 KPESCVPCGKRIK-FGKLSLKCRDCRVVS 45 (61)
T ss_dssp SCEECTTTCCEEC-TTCEEEEESSSSCEE
T ss_pred CCcccccccCEEE-EeeEeeECCCCCCeE
Confidence 3467989999997 544678884 87665
No 68
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.04 E-value=22 Score=21.32 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=6.0
Q ss_pred ECCCCCCccc
Q 039226 81 QCMGCKARLG 90 (121)
Q Consensus 81 ~CPkC~~kLG 90 (121)
.|++|+..|-
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 4666666654
No 69
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=28.92 E-value=21 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.2
Q ss_pred CCCeeEecccccccccCCCC
Q 039226 10 NPQAIYRCKKCRRLVASEEN 29 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ 29 (121)
...-.|.|..|...||.+++
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~ 52 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEK 52 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGG
T ss_pred cCCeEEEeCCCCCeeecCcc
Confidence 45679999999999999875
No 70
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=28.87 E-value=23 Score=26.02 Aligned_cols=14 Identities=36% Similarity=0.493 Sum_probs=10.9
Q ss_pred cccceeEECCCCCC
Q 039226 74 GFVGEKLQCMGCKA 87 (121)
Q Consensus 74 ~~~~GKL~CPkC~~ 87 (121)
|...-||+||+|+.
T Consensus 129 g~~~VKlyCP~C~D 142 (182)
T 1qf8_A 129 GEAMVKLYCPKCMD 142 (182)
T ss_dssp TSCBCEEECTTTCC
T ss_pred CCCceEEECCCccc
Confidence 34566999999975
No 71
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.85 E-value=14 Score=22.93 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=17.9
Q ss_pred eeEECCCCCCccceeee-ec-ccC-CCCCe
Q 039226 78 EKLQCMGCKARLGSFNW-AG-LQC-SCGAW 104 (121)
Q Consensus 78 GKL~CPkC~~kLG~f~w-~G-~qC-sCG~w 104 (121)
-.|.||.|++.| .|+= .| ..| +||..
T Consensus 7 ~iL~CP~ck~~L-~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 7 DILVCPVCKGRL-EFQRAQAELVCNADRLA 35 (70)
T ss_dssp CCCBCTTTCCBE-EEETTTTEEEETTTTEE
T ss_pred hheECCCCCCcC-EEeCCCCEEEcCCCCce
Confidence 458999999998 3442 23 578 48864
No 72
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=28.66 E-value=19 Score=22.56 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=12.1
Q ss_pred CCCCCCccceeeeecc
Q 039226 82 CMGCKARLGSFNWAGL 97 (121)
Q Consensus 82 CPkC~~kLG~f~w~G~ 97 (121)
||.|++.-=+-+|.|+
T Consensus 26 CPnC~s~~tS~~w~G~ 41 (69)
T 1ryq_A 26 CPVCGSRDLSEEWFDL 41 (69)
T ss_dssp CTTTCCCCEESCEEEE
T ss_pred CCCccCCccCCccceE
Confidence 8888876557788884
No 73
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.62 E-value=4.9 Score=18.55 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=14.4
Q ss_pred EecccccccccCCCCeeeC
Q 039226 15 YRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 15 yrCrKCR~~Lf~~~~ii~H 33 (121)
|.|..|.+......++..|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H 21 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRH 21 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHH
T ss_pred cCCcccCcccCChHHHHHH
Confidence 7899998876666666666
No 74
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=28.57 E-value=17 Score=20.97 Aligned_cols=16 Identities=25% Similarity=0.773 Sum_probs=11.1
Q ss_pred ECCCCCCccceeeeecccCC
Q 039226 81 QCMGCKARLGSFNWAGLQCS 100 (121)
Q Consensus 81 ~CPkC~~kLG~f~w~G~qCs 100 (121)
.|--|+..| |.|.+|.
T Consensus 16 ~C~~C~k~i----~~G~kC~ 31 (49)
T 1kbe_A 16 VCNVCQKSM----IFGVKCK 31 (49)
T ss_dssp CCSSSCCSS----CCEEEET
T ss_pred CccccCcee----ECcCCCC
Confidence 476777777 6777774
No 75
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.16 E-value=7.5 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.628 Sum_probs=15.8
Q ss_pred CeeEecccccccccCCCCeeeC
Q 039226 12 QAIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 12 ~~~yrCrKCR~~Lf~~~~ii~H 33 (121)
...|.|..|.+......++..|
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAH 28 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHHH
Confidence 3469999998876666666555
No 76
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=28.14 E-value=25 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.493 Sum_probs=10.8
Q ss_pred cccceeEECCCCCC
Q 039226 74 GFVGEKLQCMGCKA 87 (121)
Q Consensus 74 ~~~~GKL~CPkC~~ 87 (121)
|...-||+||+|+.
T Consensus 129 g~~~VKlyCP~C~D 142 (215)
T 4dgl_A 129 GEAMVKLYCPKCMD 142 (215)
T ss_dssp TSCBEEEECTTTCC
T ss_pred CccceeEeCCCccc
Confidence 34566999999974
No 77
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.98 E-value=12 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=8.7
Q ss_pred eEECCCCCCcc
Q 039226 79 KLQCMGCKARL 89 (121)
Q Consensus 79 KL~CPkC~~kL 89 (121)
.+.||.|+.||
T Consensus 45 ~irCp~CG~RI 55 (70)
T 1twf_L 45 AVRCKDCGHRI 55 (70)
T ss_dssp TTCCSSSCCCC
T ss_pred CccCCCCCceE
Confidence 46899999865
No 78
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.20 E-value=12 Score=22.35 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLG 90 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG 90 (121)
.|.+.|-. -..|+.... ...+...||.|...+.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSM--LDKGESSCPVCRISYQ 70 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHH--HTTSCCCCTTTCCSSC
T ss_pred CCCCHHHHHHHHHHHHHhh--cCCCCCcCCCCCCccC
Confidence 48888854 346776521 1245789999999885
No 79
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.13 E-value=12 Score=20.91 Aligned_cols=24 Identities=25% Similarity=0.471 Sum_probs=15.6
Q ss_pred CCCCeeEecccccccccCCCCeeeC
Q 039226 9 ANPQAIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 9 ~~~~~~yrCrKCR~~Lf~~~~ii~H 33 (121)
.++...|.|-+|+..+-. ....+|
T Consensus 4 ~~~~~~~~C~~C~~~i~~-~~~~EH 27 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPV-WDMPEH 27 (39)
T ss_dssp --CCCEEECTTTCCEEEG-GGHHHH
T ss_pred CCcCCCcccccccCcCCc-ccccch
Confidence 345668999999988765 334444
No 80
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=27.09 E-value=10 Score=23.07 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=10.9
Q ss_pred eEECCCCCC----ccceeeee
Q 039226 79 KLQCMGCKA----RLGSFNWA 95 (121)
Q Consensus 79 KL~CPkC~~----kLG~f~w~ 95 (121)
|..|-+|+- |+-.|||+
T Consensus 32 K~~Ca~CGygpa~r~R~ynWs 52 (57)
T 1vq8_1 32 KKVCSSCGFGKSAKRRDYEWQ 52 (57)
T ss_dssp TTEETTTCTTTCSSCCCCGGG
T ss_pred ccccccccCCchhhhcCcchh
Confidence 345666665 77777775
No 81
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=26.93 E-value=43 Score=25.04 Aligned_cols=37 Identities=32% Similarity=0.977 Sum_probs=26.2
Q ss_pred ceeEECCCCCCccceeeee--------c--ccCC-CCC-eeeceEEEecCCc
Q 039226 77 GEKLQCMGCKARLGSFNWA--------G--LQCS-CGA-WATPAFQLHKSRL 116 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~--------G--~qCs-CG~-wv~Paf~l~kskV 116 (121)
-.++.|.+|+.. |++. + -.|+ ||. .+.|.+-+.--.+
T Consensus 121 ~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~FgE~l 169 (253)
T 1ma3_A 121 MDKLDCLDCHET---YDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL 169 (253)
T ss_dssp EEEEEETTTCCE---EEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBTSBC
T ss_pred cCeeeeCCCCCc---CcHHHHHHHhccCCCCCCCCCCCccccceEEEeCCCC
Confidence 357789999884 5652 2 4795 999 9999887654443
No 82
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.76 E-value=4.5 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=16.3
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H 28 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKSH 28 (37)
T ss_dssp CCCEETTTTEECSSHHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHHH
Confidence 359999999987776666666
No 83
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=26.47 E-value=14 Score=23.69 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=10.2
Q ss_pred ceeEECCCCCCc
Q 039226 77 GEKLQCMGCKAR 88 (121)
Q Consensus 77 ~GKL~CPkC~~k 88 (121)
..|..||+|+.+
T Consensus 28 ~~k~FCp~CGn~ 39 (79)
T 2con_A 28 MNRVFCGHCGNK 39 (79)
T ss_dssp SSCCSCSSSCCS
T ss_pred cccccccccCcc
Confidence 568999999985
No 84
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.42 E-value=6.5 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=13.6
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+...+...+..|
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H 26 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVH 26 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHH
T ss_pred CCCCCCCCCCcCCCHHHHHHH
Confidence 457777777766655555555
No 85
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.36 E-value=4.5 Score=18.43 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=13.5
Q ss_pred EecccccccccCCCCeeeC
Q 039226 15 YRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 15 yrCrKCR~~Lf~~~~ii~H 33 (121)
|.|..|.+......++..|
T Consensus 3 ~~C~~C~~~f~~~~~l~~H 21 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRH 21 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHH
Confidence 7899998876665555555
No 86
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.33 E-value=15 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=20.6
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLG 90 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG 90 (121)
.|.+.|-. -..|+.. ..+...||.|...+.
T Consensus 37 ~CgH~fC~~Ci~~~~~~-----~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGET-----SCGFFKCPLCKTSVR 68 (73)
T ss_dssp TTCCEEEHHHHHHHCSS-----SCSCCCCSSSCCCCC
T ss_pred CCCChhhHHHHHHHHHc-----CCCCCCCCCCCCcCC
Confidence 58888864 3456652 245678999998874
No 87
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.13 E-value=26 Score=22.26 Aligned_cols=26 Identities=27% Similarity=0.889 Sum_probs=20.3
Q ss_pred ceeEECCCCCCccceeeeecccCCCCCee
Q 039226 77 GEKLQCMGCKARLGSFNWAGLQCSCGAWA 105 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~G~qCsCG~wv 105 (121)
..+..|..|+.|||-- |.+|.||...
T Consensus 23 ~~~~RC~~C~kkvgL~---~f~CrCg~~F 48 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT---GFKCRCGSTF 48 (74)
T ss_dssp CCCCBCSSSCCBCTTT---CEECTTSCEE
T ss_pred ccCccchhhcCccccc---ceEeccCCEe
Confidence 4556798999999854 7889998754
No 88
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=25.48 E-value=23 Score=25.30 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.5
Q ss_pred CCCeeEecccccccccCCCCe
Q 039226 10 NPQAIYRCKKCRRLVASEENI 30 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~i 30 (121)
...-.|.|..|...||.+++=
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~K 59 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADK 59 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGE
T ss_pred CCCEEEEecCCCcccccCccc
Confidence 356799999999999998743
No 89
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=25.34 E-value=52 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=26.0
Q ss_pred ceeEECCCCCCccceeeee-------cccCC-CCCeeeceEEEecCCc
Q 039226 77 GEKLQCMGCKARLGSFNWA-------GLQCS-CGAWATPAFQLHKSRL 116 (121)
Q Consensus 77 ~GKL~CPkC~~kLG~f~w~-------G~qCs-CG~wv~Paf~l~kskV 116 (121)
-.++.|.+|+.. |.+. .-.|+ ||..+.|.+-+.--.+
T Consensus 119 ~~~~~C~~C~~~---~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~FgE~l 163 (249)
T 1m2k_A 119 LRVVRCTSCNNS---FEVESAPKIPPLPKCDKCGSLLRPGVVWAGEML 163 (249)
T ss_dssp EEEEEESSSSCE---EECSSCCCSSSCCBCSSSSSBEEEEECCTTSCC
T ss_pred cceeEeCCCCCc---ccchhhccCCCCCCCCCCCCCcCCeEEecCCCC
Confidence 356789999874 5552 24796 9999999886654433
No 90
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.78 E-value=19 Score=22.22 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=18.4
Q ss_pred cceeEECCCCCCccceeee-ec-ccCC-CCCe
Q 039226 76 VGEKLQCMGCKARLGSFNW-AG-LQCS-CGAW 104 (121)
Q Consensus 76 ~~GKL~CPkC~~kLG~f~w-~G-~qCs-CG~w 104 (121)
+-.-|.||.|++.| .|+= .| ..|. ||..
T Consensus 7 LLeiL~CP~ck~~L-~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 7 LLEVLACPKDKGPL-RYLESEQLLVNERLNLA 37 (67)
T ss_dssp GTCCCBCTTTCCBC-EEETTTTEEEETTTTEE
T ss_pred HHHHhCCCCCCCcC-eEeCCCCEEEcCCCCcc
Confidence 34458999999998 3442 23 5775 7763
No 91
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=6.3 Score=19.26 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=16.1
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLKAH 28 (36)
T ss_dssp CSEECSSSSCEESCHHHHHHH
T ss_pred CCccCCCCCchhCCHHHHHHH
Confidence 459999999887776666665
No 92
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.70 E-value=6.5 Score=19.23 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.1
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDRH 28 (36)
T ss_dssp CCEECSSSCCEESSHHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHHH
Confidence 469999999877666666666
No 93
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.63 E-value=27 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=14.2
Q ss_pred eEECCCCCCccceeeee---cccCC-CCC
Q 039226 79 KLQCMGCKARLGSFNWA---GLQCS-CGA 103 (121)
Q Consensus 79 KL~CPkC~~kLG~f~w~---G~qCs-CG~ 103 (121)
.-.||+|++.+ |-.. -..|. ||.
T Consensus 19 ~k~CP~CG~~~--fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGV--FMADHGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSC--EEEECSSEEECSSSCC
T ss_pred cccCCCCCCce--EEecCCCeEECCCCCC
Confidence 45699999843 4442 14675 775
No 94
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.60 E-value=18 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLG 90 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG 90 (121)
.|.+.|-. -..|+.... ...+...||.|...+.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 36 DCNHSFCRACITLNYESNR--NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCCBCHHHHHHHHHHSB--CTTSCBCCTTTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcc--CCCCCCCCCCCCCcCC
Confidence 48887753 246666421 1245789999999874
No 95
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=24.59 E-value=5.7 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=16.1
Q ss_pred EecccccccccCCCCeeeCCC
Q 039226 15 YRCKKCRRLVASEENIVPHEQ 35 (121)
Q Consensus 15 yrCrKCR~~Lf~~~~ii~H~~ 35 (121)
|.|..|.+......++..|..
T Consensus 3 ~~C~~C~k~f~~~~~L~~H~~ 23 (32)
T 2kfq_A 3 FACPACPKRFMRSDALSKHIK 23 (32)
T ss_dssp SSSSSSCTTHHHHHTTSSSTT
T ss_pred CCCCCCCcccCCHHHHHHHHH
Confidence 789999887777777777743
No 96
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.26 E-value=5.5 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=15.9
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSH 28 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHH
Confidence 469999999877666666655
No 97
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.17 E-value=8.9 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.6
Q ss_pred eeEecccccccccCC-CCeeeC
Q 039226 13 AIYRCKKCRRLVASE-ENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~-~~ii~H 33 (121)
..|.|..|.+..... .++..|
T Consensus 8 k~~~C~~C~k~f~~~~~~L~~H 29 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDLQRH 29 (37)
T ss_dssp CCEECSSSSCEECSSCHHHHHH
T ss_pred CCeECCCCChhhccCHHHHHHH
Confidence 359999999877665 566665
No 98
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.00 E-value=18 Score=21.27 Aligned_cols=13 Identities=31% Similarity=0.789 Sum_probs=10.5
Q ss_pred ceeEECCCCCCcc
Q 039226 77 GEKLQCMGCKARL 89 (121)
Q Consensus 77 ~GKL~CPkC~~kL 89 (121)
.|.-.||+|+++-
T Consensus 10 ~~~~~CPrCn~~f 22 (49)
T 2e72_A 10 GGRKICPRCNAQF 22 (49)
T ss_dssp SSCCCCTTTCCCC
T ss_pred CCceeCCcccccc
Confidence 3678899999875
No 99
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.62 E-value=41 Score=20.10 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=4.5
Q ss_pred ECCCCCCcc
Q 039226 81 QCMGCKARL 89 (121)
Q Consensus 81 ~CPkC~~kL 89 (121)
.|++|+..|
T Consensus 17 ~C~~C~~~I 25 (81)
T 2dlo_A 17 KCATCSQPI 25 (81)
T ss_dssp BCTTTCCBC
T ss_pred ccccCCCee
Confidence 355555544
No 100
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=23.37 E-value=29 Score=20.51 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=14.9
Q ss_pred EECCCCCCccceeeeecccCC-CCCe
Q 039226 80 LQCMGCKARLGSFNWAGLQCS-CGAW 104 (121)
Q Consensus 80 L~CPkC~~kLG~f~w~G~qCs-CG~w 104 (121)
-.|-.|+.-|-.+...|.+|+ |+..
T Consensus 21 t~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 21 TFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CcccccChhhhccCceeeECCCCCCe
Confidence 456667776644444677775 6543
No 101
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.88 E-value=7.3 Score=18.67 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.4
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H 26 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSH 26 (35)
T ss_dssp SEECSSSCCEESSHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHH
Confidence 59999999887666666655
No 102
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.72 E-value=9.3 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=18.0
Q ss_pred CCCeeEecccccccccCCCCeeeC
Q 039226 10 NPQAIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 10 ~~~~~yrCrKCR~~Lf~~~~ii~H 33 (121)
.....|.|..|.+......++..|
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~l~~H 36 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGNLASH 36 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHHHHHH
T ss_pred CCCCCeECCCCCceeCCHHHHHHH
Confidence 344579999999887777777666
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=22.62 E-value=23 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=18.0
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCcc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARL 89 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kL 89 (121)
.|.+.|=. -.+|+.. +..||-|.+.|
T Consensus 26 ~C~H~f~~~Ci~~w~~~--------~~~CP~Cr~~~ 53 (55)
T 1iym_A 26 RCGHGFHAECVDMWLGS--------HSTCPLCRLTV 53 (55)
T ss_dssp SSCCEECTTHHHHTTTT--------CCSCSSSCCCS
T ss_pred CCCCcccHHHHHHHHHc--------CCcCcCCCCEe
Confidence 49888854 3577653 34699998865
No 104
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.57 E-value=42 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=11.1
Q ss_pred cCCCCCCeeEeccccccc
Q 039226 6 KHVANPQAIYRCKKCRRL 23 (121)
Q Consensus 6 ~~~~~~~~~yrCrKCR~~ 23 (121)
+.++...+.|.|.+|...
T Consensus 35 sadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 35 AGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp SSSCSSEEEEEESSSCCE
T ss_pred cCCCCCcEEEEcCCCCCE
Confidence 333444467888888653
No 105
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.56 E-value=7.6 Score=19.47 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.2
Q ss_pred eEecccccccccCCCCeeeC
Q 039226 14 IYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCrKCR~~Lf~~~~ii~H 33 (121)
.|.|..|.+......++..|
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H 25 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGH 25 (39)
T ss_dssp SEECTTTCCEESSHHHHHHH
T ss_pred ceECCCCCcccCCHHHHHHH
Confidence 59999999987777777666
No 106
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.49 E-value=25 Score=24.38 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=9.1
Q ss_pred ECCCCCCccc
Q 039226 81 QCMGCKARLG 90 (121)
Q Consensus 81 ~CPkC~~kLG 90 (121)
+||+|++++-
T Consensus 5 ~C~~CG~~~~ 14 (189)
T 3cng_A 5 FCSQCGGEVI 14 (189)
T ss_dssp BCTTTCCBCE
T ss_pred cCchhCCccc
Confidence 7999999995
No 107
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.42 E-value=43 Score=20.43 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=36.9
Q ss_pred CeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEecccchhhhhhccccceeEECCCCCCc
Q 039226 12 QAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKAR 88 (121)
Q Consensus 12 ~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~~Wm~~~~~~~~~GKL~CPkC~~k 88 (121)
...|.| .|.+...+...+..|...- . ....-.-..|...|...............+....|+.|+..
T Consensus 8 ~k~~~C-~C~~~f~~~~~l~~H~~~h-------~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 74 (110)
T 2csh_A 8 DKLYPC-QCGKSFTHKSQRDRHMSMH-------L--GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74 (110)
T ss_dssp CCCEEC-TTSCEESSHHHHHHHHHHH-------S--CCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCE
T ss_pred CCCEec-cCCCccCCHHHHHHHHHHc-------C--CCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcch
Confidence 346999 8998877766676663210 0 00001134577777765444443322223445789888864
No 108
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=15 Score=21.20 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=19.3
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccc
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLG 90 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG 90 (121)
.|.+.|-. -.+|+. .+...||.|.+.+.
T Consensus 32 ~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 32 ECGHRFCESCMAALLS-------SSSPKCTACQESIV 61 (66)
T ss_dssp SSSCCCCHHHHHHHHT-------TSSCCCTTTCCCCC
T ss_pred CCCCHHHHHHHHHHHH-------hCcCCCCCCCcCCC
Confidence 58888854 345664 33567999999875
No 109
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.99 E-value=30 Score=22.34 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.6
Q ss_pred CCCCCCccceeeeecc
Q 039226 82 CMGCKARLGSFNWAGL 97 (121)
Q Consensus 82 CPkC~~kLG~f~w~G~ 97 (121)
||.|+..-=+-+|.|.
T Consensus 38 CPnCgs~~~T~~w~G~ 53 (81)
T 3p8b_A 38 CPVCGSRDLSEEWFDL 53 (81)
T ss_dssp CTTTCCCCEESCEEEE
T ss_pred CCCCCCCccCCccceE
Confidence 9999987668889994
No 110
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=21.85 E-value=7.2 Score=17.65 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=14.2
Q ss_pred eEecc--cccccccCCCCeeeC
Q 039226 14 IYRCK--KCRRLVASEENIVPH 33 (121)
Q Consensus 14 ~yrCr--KCR~~Lf~~~~ii~H 33 (121)
.|.|. .|.+......++..|
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H 23 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRH 23 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHH
T ss_pred CCCCcCCcCcCccCCHHHHHHH
Confidence 37888 998876666666555
No 111
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.79 E-value=26 Score=21.86 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=19.4
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccce
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLGS 91 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG~ 91 (121)
.|.+.|-. -..|+. .+..||.|...+..
T Consensus 40 ~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLS--------YKTQCPTCCVTVTE 69 (99)
T ss_dssp TTCCEEEHHHHHHHHT--------TCCBCTTTCCBCCG
T ss_pred CCCCHhhHHHHHHHHH--------CCCCCCCCCCcCCh
Confidence 58888864 235554 24689999999864
No 112
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.74 E-value=29 Score=20.45 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=14.3
Q ss_pred eEECCCCCCccceeee--ecccCC-CCC
Q 039226 79 KLQCMGCKARLGSFNW--AGLQCS-CGA 103 (121)
Q Consensus 79 KL~CPkC~~kLG~f~w--~G~qCs-CG~ 103 (121)
...||+|++-+. +.- .-..|. ||.
T Consensus 18 ~~fCPkCG~~~~-ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 18 HRFCPRCGPGVF-LAEHADRYSCGRCGY 44 (55)
T ss_dssp SCCCTTTTTTCC-CEECSSEEECTTTCC
T ss_pred cccCcCCCCcee-EeccCCEEECCCCCC
Confidence 466999999663 111 224564 766
No 113
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=21.57 E-value=45 Score=17.69 Aligned_cols=14 Identities=29% Similarity=0.942 Sum_probs=11.0
Q ss_pred CCeeEecccccccc
Q 039226 11 PQAIYRCKKCRRLV 24 (121)
Q Consensus 11 ~~~~yrCrKCR~~L 24 (121)
..-.|+|..|..++
T Consensus 3 ~~~fY~C~~CGniv 16 (36)
T 1dxg_A 3 EGDVYKCELCGQVV 16 (36)
T ss_dssp TTCEEECTTTCCEE
T ss_pred cccEEEcCCCCcEE
Confidence 35689999998766
No 114
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.33 E-value=14 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=16.7
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H 31 (44)
T 2eox_A 11 KSYNCNECGKAFTRIFHLTRH 31 (44)
T ss_dssp CCEEETTTTEEESSSHHHHTT
T ss_pred CCeECcccCcccCCHHHHHHH
Confidence 359999999887777777666
No 115
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.03 E-value=31 Score=23.09 Aligned_cols=30 Identities=27% Similarity=0.692 Sum_probs=19.9
Q ss_pred CCceeEec--ccchhhhhhccccceeEECCCCCCccceee
Q 039226 56 ECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLGSFN 93 (121)
Q Consensus 56 ~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG~f~ 93 (121)
.|.|.|=. -..|+.. +..||.|...+.+..
T Consensus 70 ~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKR--------KIECPICRKDIKSKT 101 (138)
T ss_dssp TTSCEEEHHHHHHHTTT--------CSBCTTTCCBCCCEE
T ss_pred CCCCCccHHHHHHHHHc--------CCcCCCCCCcCCCCC
Confidence 47777754 2356543 346999999987654
No 116
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.90 E-value=49 Score=18.98 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.4
Q ss_pred ccccCCCCCCeeEecccccc
Q 039226 3 QVHKHVANPQAIYRCKKCRR 22 (121)
Q Consensus 3 ~~~~~~~~~~~~yrCrKCR~ 22 (121)
|+-+.++...+.|.|.+|..
T Consensus 26 Q~RsaDE~mT~Fy~C~~Cg~ 45 (50)
T 1tfi_A 26 QTRSADEPMTTFVVCNECGN 45 (50)
T ss_dssp CSSSSSSCCEEEEEESSSCC
T ss_pred cCcCCCCCceEEEEcCCCCC
Confidence 34445555567899999974
No 117
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=20.71 E-value=32 Score=20.23 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=13.5
Q ss_pred ceeEECCC--------CCCccceeeeecccCC
Q 039226 77 GEKLQCMG--------CKARLGSFNWAGLQCS 100 (121)
Q Consensus 77 ~GKL~CPk--------C~~kLG~f~w~G~qCs 100 (121)
.||+-||. |+.||- ..|..|.
T Consensus 5 mgkvpcpdgevgytcdcgekic---lygqscn 33 (57)
T 1e0f_I 5 MGKVPCPDGEVGYTCDCGEKIC---LYGQSCN 33 (57)
T ss_dssp SSSSBCCSSSCSSCEECSSSEE---CTTCCBS
T ss_pred cccccCCCCceeeeccCCceee---Eeccccc
Confidence 57788882 888883 4455454
No 118
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=8.7 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=15.4
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNVH 28 (36)
T ss_dssp CSEECSSSSCEESSHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHH
Confidence 359999998876666666555
No 119
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=20.64 E-value=39 Score=23.83 Aligned_cols=13 Identities=15% Similarity=0.636 Sum_probs=11.0
Q ss_pred ccceeEECCCCCC
Q 039226 75 FVGEKLQCMGCKA 87 (121)
Q Consensus 75 ~~~GKL~CPkC~~ 87 (121)
..+|.|.||.|+-
T Consensus 105 v~eg~L~C~~cg~ 117 (141)
T 2j6a_A 105 IAEGEMKCRNCGH 117 (141)
T ss_dssp EEEEEEECTTTCC
T ss_pred ccCCEEECCCCCC
Confidence 5799999999964
No 120
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.51 E-value=31 Score=23.94 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=8.4
Q ss_pred EECCCCCCcc
Q 039226 80 LQCMGCKARL 89 (121)
Q Consensus 80 L~CPkC~~kL 89 (121)
..||.|++++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799999886
No 121
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.46 E-value=7.5 Score=19.03 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=15.3
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 10 k~~~C~~C~k~f~~~~~l~~H 30 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLALH 30 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHHH
Confidence 359999998877666666555
No 122
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.30 E-value=36 Score=24.57 Aligned_cols=26 Identities=15% Similarity=0.533 Sum_probs=16.0
Q ss_pred EECCCCCCccceeee-ec-ccCC-CCCeeec
Q 039226 80 LQCMGCKARLGSFNW-AG-LQCS-CGAWATP 107 (121)
Q Consensus 80 L~CPkC~~kLG~f~w-~G-~qCs-CG~wv~P 107 (121)
..||+|+.||= .. .| -.|. ||....|
T Consensus 43 ~ACp~CnKKV~--~~~~g~~~CekC~~~~~~ 71 (172)
T 3u50_C 43 YRCTCQGKSVL--KYHGDSFFCESCQQFINP 71 (172)
T ss_dssp EECTTSCCCEE--EETTTEEEETTTTEECCC
T ss_pred hhchhhCCEee--eCCCCeEECCCCCCCCCc
Confidence 56899999982 22 23 3674 7776444
No 123
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.23 E-value=9.2 Score=19.27 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=16.5
Q ss_pred eeEecccccccccCCCCeeeC
Q 039226 13 AIYRCKKCRRLVASEENIVPH 33 (121)
Q Consensus 13 ~~yrCrKCR~~Lf~~~~ii~H 33 (121)
..|.|..|.+......++..|
T Consensus 10 ~~~~C~~C~k~f~~~~~l~~H 30 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLAVH 30 (42)
T ss_dssp CCEECSSSCCEESSHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHH
Confidence 359999999887777777666
Done!