BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039227
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 48/375 (12%)
Query: 283 FKSHWIKGEPVIITNVLDYSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVK 342
FK W +G+P +++ V + W+ +S D ++C D
Sbjct: 27 FKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDHQ---------ADLLNCKDSIISN 77
Query: 343 INTYQFFKAYME---GRTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTH 399
N +F+ + E + + + V+LKLKDWP F+ +P + + LP +Y +
Sbjct: 78 ANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCN 137
Query: 400 PYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELGRGDSVTKLHCDMSDAVNVLMHTAK 459
P G N+A+ LP F++PDLGP+ AYGV T LH ++SD VN+L++
Sbjct: 138 P-EGKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVG- 195
Query: 460 VDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSMQSNTLS 519
+A+ + K I + E EE L I + L
Sbjct: 196 -------IAKGNGILSKAGILKKFE-------------------EEDLDDILRKR---LK 226
Query: 520 LNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKK 579
+ + GALW I+ +DV K+ E+L+ KE + + P PI DQ++Y+N ++
Sbjct: 227 DSSEIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQ 282
Query: 580 KLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTDEF 639
+L EE+GV + +Q LG+A+++PAG HQV+N SC ++ DFVSPE++ E LT E
Sbjct: 283 RLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQEL 342
Query: 640 RTLPRNHRAKKDKLQ 654
R L + DKLQ
Sbjct: 343 RLL-KEEINYDDKLQ 356
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENI 629
+P +Q+ GE V +P G H V NL + I +F S N
Sbjct: 254 KPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNF 295
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENI 629
+P +Q+ GE V +P G H V NL + I +F S N
Sbjct: 253 KPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNF 294
>pdb|4FN6|A Chain A, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|B Chain B, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|C Chain C, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|D Chain D, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
Length = 229
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 361 SWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDL 420
S+ I+K K WPPS G ++ + ++ ++ + I IA P ++ +L
Sbjct: 96 SYEEIIKTKVWPPS----------GDHYIKHMYFQAHSRE-NAIYTIAAMAPXPYIYAEL 144
Query: 421 GPKAYIAYGVAEELGRGDSVTKLHCDMSDAVNV---LMHTAKVDYSSKQVAEIEKLKRKH 477
++ + + E +M D +NV LM+ S K++ +++++ +
Sbjct: 145 AKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFESLMNKLAESMSDKELEQVKQVFLES 204
Query: 478 AIQDRREFFN 487
I +RR FFN
Sbjct: 205 CIHERR-FFN 213
>pdb|3HFX|A Chain A, Crystal Structure Of Carnitine Transporter
Length = 504
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 111 CSYDLCLTCCREIRDG 126
CSY L ++ CRE+RDG
Sbjct: 426 CSYTLAMSTCREVRDG 441
>pdb|2WSX|A Chain A, Crystal Structure Of Carnitine Transporter From
Escherichia Coli
pdb|2WSX|B Chain B, Crystal Structure Of Carnitine Transporter From
Escherichia Coli
pdb|2WSX|C Chain C, Crystal Structure Of Carnitine Transporter From
Escherichia Coli
Length = 504
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 111 CSYDLCLTCCREIRDG 126
CSY L ++ CRE+RDG
Sbjct: 426 CSYTLAMSTCREVRDG 441
>pdb|1JWK|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
pdb|1JWK|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
Length = 434
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 7 AKSCPFCCRNCNCNACLHNSE-IVKVTRDLGAPAKTVENIGHFKYLLRLLYPFLRKFHHD 65
A SC F C++ +C + N + + + RD P + LL F+ ++ +
Sbjct: 33 ATSCDFTCKSKSCLGSIMNPKSLTRGPRDKPTP---------LEELLPHAIEFINQY-YG 82
Query: 66 QVKEKKIEAKIKGLE--LSEIEVPQVVLRSNERLFCNNFDYYRSCPRC 111
KE KIE + LE EIE + + L +R+ PRC
Sbjct: 83 SFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRC 130
>pdb|3DWC|A Chain A, Trypanosoma Cruzi Metallocarboxypeptidase 1
pdb|3DWC|C Chain C, Trypanosoma Cruzi Metallocarboxypeptidase 1
pdb|3DWC|D Chain D, Trypanosoma Cruzi Metallocarboxypeptidase 1
pdb|3DWC|B Chain B, Trypanosoma Cruzi Metallocarboxypeptidase 1
Length = 505
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 435 GRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREF 485
RG ++ +L M D + A ++ + K V ++EKL+R + + RR +
Sbjct: 41 ARGAAMAELQLHMHDTITAPKIRALIEEAEKSVGDLEKLQRANLREMRRAW 91
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 468 AEIEKLKR-KHAIQDRREFFNPLYARDETFDMNHSKSEEK---LRPISSMQSNTLSLNGK 523
A+++K+ K IQ+ E+ L A +E +M+ S EK L+ I+++ N L+ K
Sbjct: 7 AQLQKMAYVKFRIQED-EYVAILNALEEYHNMSESSVVEKYLKLKDINNLTDNYLNTYKK 65
Query: 524 DGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPI 566
G R + + K EYL E ++ +PVE+ +H I
Sbjct: 66 SG-------RNKALKKFKEYLTMEVLELKNNSLTPVEKNLHFI 101
>pdb|3MBK|A Chain A, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
pdb|3MBK|B Chain B, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
Length = 264
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 540 LGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWS 591
+GE L + HVYCSP + V H+ L + K++ E G+ W+
Sbjct: 69 VGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFEWT 120
>pdb|2H0Q|A Chain A, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|B Chain B, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|C Chain C, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
Length = 261
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 540 LGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWS 591
+GE L + HVYCSP + V H+ L + K++ E G+ W+
Sbjct: 69 VGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFEWT 120
>pdb|2IKQ|A Chain A, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|B Chain B, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|M Chain M, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
Length = 270
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 540 LGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWS 591
+GE L + HVYCSP + V H+ L + K++ E G+ W+
Sbjct: 73 VGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFEWT 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,998,179
Number of Sequences: 62578
Number of extensions: 837886
Number of successful extensions: 1789
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 18
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)