Query 039227
Match_columns 654
No_of_seqs 158 out of 197
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 6E-172 1E-176 1428.7 29.1 587 1-654 265-863 (889)
2 PF02373 JmjC: JmjC domain, hy 99.6 1.1E-15 2.4E-20 135.9 5.1 85 525-623 30-114 (114)
3 PF13621 Cupin_8: Cupin-like d 99.2 2.3E-11 4.9E-16 120.9 4.7 40 588-627 207-249 (251)
4 smart00558 JmjC A domain famil 97.0 0.00037 7.9E-09 55.9 2.2 54 387-458 3-56 (57)
5 KOG2131 Uncharacterized conser 96.4 0.0028 6.1E-08 68.8 4.2 51 584-634 262-312 (427)
6 PF10497 zf-4CXXC_R1: Zinc-fin 95.1 0.008 1.7E-07 55.1 0.8 24 8-31 62-85 (105)
7 PF07883 Cupin_2: Cupin domain 93.4 0.033 7.1E-07 45.2 1.0 26 591-616 38-63 (71)
8 COG1917 Uncharacterized conser 93.3 0.032 6.8E-07 51.6 0.8 58 559-621 56-115 (131)
9 KOG2130 Phosphatidylserine-spe 92.8 0.062 1.3E-06 57.8 2.2 235 278-630 62-303 (407)
10 COG0662 {ManC} Mannose-6-phosp 90.4 0.17 3.7E-06 47.2 2.1 40 589-628 74-113 (127)
11 TIGR03214 ura-cupin putative a 88.0 0.26 5.6E-06 51.6 1.7 30 585-614 213-242 (260)
12 COG4101 Predicted mannose-6-ph 83.4 0.88 1.9E-05 43.1 2.6 25 591-615 89-113 (142)
13 PRK09943 DNA-binding transcrip 83.4 0.7 1.5E-05 45.5 2.1 43 585-627 141-183 (185)
14 PRK13290 ectC L-ectoine syntha 82.5 0.7 1.5E-05 43.5 1.6 37 589-627 74-110 (125)
15 TIGR00218 manA mannose-6-phosp 81.4 0.76 1.6E-05 49.0 1.6 15 595-609 156-170 (302)
16 PF01050 MannoseP_isomer: Mann 79.6 1.1 2.4E-05 43.7 1.8 22 595-616 107-128 (151)
17 PRK15131 mannose-6-phosphate i 79.1 0.99 2.1E-05 50.2 1.6 17 593-609 240-256 (389)
18 PRK04190 glucose-6-phosphate i 75.2 2.1 4.6E-05 43.3 2.5 28 589-616 119-146 (191)
19 COG1482 ManA Phosphomannose is 75.2 1.5 3.2E-05 47.6 1.5 18 592-609 160-177 (312)
20 PLN02288 mannose-6-phosphate i 71.5 2 4.3E-05 48.0 1.5 16 594-609 255-270 (394)
21 KOG2508 Predicted phospholipas 70.3 6.6 0.00014 43.5 5.0 52 267-318 18-74 (437)
22 PTZ00194 60S ribosomal protein 65.7 2.9 6.2E-05 40.7 1.1 44 562-607 17-60 (143)
23 TIGR01479 GMP_PMI mannose-1-ph 65.5 2.8 6.1E-05 47.4 1.1 30 587-616 412-441 (468)
24 PF00190 Cupin_1: Cupin; Inte 65.4 4.3 9.4E-05 38.3 2.2 35 591-625 81-121 (144)
25 cd02340 ZZ_NBR1_like Zinc fing 61.7 4.3 9.3E-05 31.6 1.2 20 102-121 11-31 (43)
26 PRK15460 cpsB mannose-1-phosph 61.3 4.7 0.0001 46.1 1.9 31 585-615 419-449 (478)
27 cd02335 ZZ_ADA2 Zinc finger, Z 58.9 4.9 0.00011 31.9 1.1 18 104-121 14-32 (49)
28 cd02339 ZZ_Mind_bomb Zinc fing 58.6 5.2 0.00011 31.5 1.2 20 102-121 12-32 (45)
29 smart00835 Cupin_1 Cupin. This 57.5 8.3 0.00018 36.4 2.6 27 588-614 73-99 (146)
30 PF08007 Cupin_4: Cupin superf 56.6 8.5 0.00019 41.4 2.8 41 590-630 176-216 (319)
31 PRK01191 rpl24p 50S ribosomal 55.6 5.5 0.00012 37.7 1.0 42 563-606 17-58 (120)
32 PF02041 Auxin_BP: Auxin bindi 54.9 6.8 0.00015 38.6 1.5 41 569-614 75-115 (167)
33 TIGR03214 ura-cupin putative a 53.1 9.8 0.00021 40.0 2.5 47 564-615 77-123 (260)
34 TIGR03404 bicupin_oxalic bicup 51.6 9.6 0.00021 42.2 2.3 56 560-616 259-315 (367)
35 PF01238 PMI_typeI: Phosphoman 49.6 5.8 0.00013 43.8 0.2 16 594-609 254-269 (373)
36 cd02249 ZZ Zinc finger, ZZ typ 47.3 10 0.00022 29.6 1.1 23 102-124 11-34 (46)
37 PRK11171 hypothetical protein; 45.4 12 0.00026 39.4 1.7 28 587-614 98-125 (266)
38 PF02938 GAD: GAD domain; Int 42.9 8.5 0.00018 34.3 0.1 71 531-612 22-93 (95)
39 KOG2107 Uncharacterized conser 41.6 21 0.00046 35.7 2.6 56 538-610 80-136 (179)
40 cd02337 ZZ_CBP Zinc finger, ZZ 41.5 13 0.00028 28.8 0.9 21 102-122 10-31 (41)
41 KOG3905 Dynein light intermedi 40.8 12 0.00026 41.3 0.9 12 596-607 302-313 (473)
42 cd02344 ZZ_HERC2 Zinc finger, 40.4 15 0.00032 29.1 1.1 21 102-122 12-33 (45)
43 PRK10371 DNA-binding transcrip 39.8 20 0.00044 38.0 2.4 32 585-616 59-90 (302)
44 PRK13264 3-hydroxyanthranilate 39.8 18 0.00039 36.5 1.9 43 589-631 75-117 (177)
45 KOG2583 Ubiquinol cytochrome c 38.5 17 0.00038 40.8 1.7 46 250-296 158-206 (429)
46 TIGR01080 rplX_A_E ribosomal p 38.1 19 0.00042 33.8 1.7 43 563-607 13-55 (114)
47 PF05899 Cupin_3: Protein of u 37.4 18 0.00038 30.8 1.2 17 591-607 45-61 (74)
48 TIGR03037 anthran_nbaC 3-hydro 37.1 20 0.00044 35.5 1.7 45 588-632 68-112 (159)
49 PF12852 Cupin_6: Cupin 35.0 22 0.00048 34.6 1.7 23 592-614 57-79 (186)
50 PF02944 BESS: BESS motif; In 34.1 45 0.00098 24.9 2.8 24 50-73 6-29 (37)
51 cd02341 ZZ_ZZZ3 Zinc finger, Z 33.9 21 0.00045 28.6 1.1 21 102-122 12-35 (48)
52 PRK11171 hypothetical protein; 33.4 25 0.00053 37.1 1.8 31 584-614 217-247 (266)
53 PF08990 Docking: Erythronolid 32.8 31 0.00066 24.7 1.6 17 536-552 3-19 (27)
54 PF00569 ZZ: Zinc finger, ZZ t 31.5 23 0.00049 27.7 0.9 21 104-124 18-39 (46)
55 TIGR03404 bicupin_oxalic bicup 31.0 35 0.00076 37.8 2.6 28 588-615 108-135 (367)
56 PF06249 EutQ: Ethanolamine ut 29.7 40 0.00086 33.3 2.4 21 587-607 110-130 (152)
57 PRK15457 ethanolamine utilizat 29.5 30 0.00066 36.3 1.7 73 526-612 143-215 (233)
58 PF02311 AraC_binding: AraC-li 26.7 37 0.00079 29.8 1.5 39 585-623 36-76 (136)
59 smart00291 ZnF_ZZ Zinc-binding 26.6 32 0.0007 26.5 1.0 20 107-126 20-40 (44)
60 PF08115 Toxin_28: SFI toxin f 26.2 31 0.00068 25.8 0.8 17 14-30 14-30 (35)
61 PF13216 DUF4024: Protein of u 25.8 27 0.00059 25.8 0.4 21 437-457 3-23 (35)
62 TIGR02297 HpaA 4-hydroxyphenyl 25.6 45 0.00098 34.3 2.2 30 585-614 57-86 (287)
63 KOG2077 JNK/SAPK-associated pr 25.1 71 0.0015 37.7 3.7 76 370-459 536-614 (832)
64 PRK13501 transcriptional activ 24.5 42 0.00091 34.9 1.6 28 585-612 51-78 (290)
65 COG4297 Uncharacterized protei 23.9 59 0.0013 31.9 2.4 24 586-609 81-104 (163)
66 PRK13503 transcriptional activ 23.7 32 0.0007 35.1 0.7 31 585-615 48-78 (278)
67 cd02338 ZZ_PCMF_like Zinc fing 22.7 39 0.00085 26.8 0.8 14 108-121 18-32 (49)
68 PF14816 FAM178: Family of unk 22.3 50 0.0011 37.0 1.8 29 572-601 62-91 (377)
69 PRK13502 transcriptional activ 22.3 65 0.0014 33.2 2.6 28 585-612 51-78 (282)
70 PF14297 DUF4373: Domain of un 21.3 25 0.00054 30.7 -0.6 33 567-600 4-36 (87)
71 COG0184 RpsO Ribosomal protein 20.7 75 0.0016 28.8 2.2 52 572-649 2-53 (89)
72 KOG1280 Uncharacterized conser 20.4 38 0.00082 37.5 0.4 29 93-121 5-40 (381)
73 PRK10314 putative acyltransfer 20.1 84 0.0018 30.0 2.6 35 570-611 111-146 (153)
74 PRK10296 DNA-binding transcrip 20.0 70 0.0015 32.9 2.2 27 585-611 56-82 (278)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=6.5e-172 Score=1428.68 Aligned_cols=587 Identities=39% Similarity=0.660 Sum_probs=526.2
Q ss_pred CCHHHHHhhCcCCCCCcccccccCCCcccccccccCCC----CchhhHHHHHH--HHHHHHhhhhhhhcHHHhhhHhhhh
Q 039227 1 MSEEAIAKSCPFCCRNCNCNACLHNSEIVKVTRDLGAP----AKTVENIGHFK--YLLRLLYPFLRKFHHDQVKEKKIEA 74 (654)
Q Consensus 1 ls~eeI~~~CP~CrgnCNCk~CLr~~~~ik~~k~~~~e----~s~~~ki~~~~--yLL~~LLP~Lkqi~~EQ~~E~EiEA 74 (654)
++.+|+|++|+||+.+|||.+|++..+++.+.+ .. .+..+++.++. |+|..++|+|+.++.+|-.+.+.||
T Consensus 265 ~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~---i~~~al~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~ 341 (889)
T KOG1356|consen 265 LSKEEVAEKCEFSWLKCNKGQCHALSELMPTQI---IPGSALLDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEA 341 (889)
T ss_pred chHhHhhhhhhHHHHhcCCccccchhhcccccc---cchhhhhhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHH
Confidence 468999999999999999999999999988776 44 67889999999 9999999999999999999999999
Q ss_pred hhcccCCCcccccccccCCCccccccc-----ccccccCCCCCcchhhhhhHHhhhcccCCCCccccccccCCcccccCC
Q 039227 75 KIKGLELSEIEVPQVVLRSNERLFCNN-----FDYYRSCPRCSYDLCLTCCREIRDGCLQGGVNMYTSHFDRGKAYLHGG 149 (654)
Q Consensus 75 ki~g~~~sei~i~~a~~~~dErvyCdn-----~D~HRsC~~CsydLCL~CC~ElR~g~~~g~~~~~~~~~~rg~~y~~g~ 149 (654)
+|||..+++ +++.+...++||+|||+ .|+||+||+|||.+||.||.+||+|.+.-..+..+.|.+||.+|+||-
T Consensus 342 ~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~ 420 (889)
T KOG1356|consen 342 SVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGP 420 (889)
T ss_pred HHhcCCCCC-CccccccCcCCCccccccccchhhccccCCCccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCc
Confidence 999999998 77777778899999999 799999999999999999999999988876666999999999999998
Q ss_pred CCCCCCCCCCCCCcccchhcccccCcccccCCCCccCCCCCCCCCCCccccccccCcCChHHHHHHHHHHHHhhcccCCC
Q 039227 150 ESLPLPSGKKSGIRFSSKKRMRKISQWKARENGDIPCPVNKLGGCGHEYLELKCIFANGWLSELKVKAKKLVKVHNLVDR 229 (654)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e~ggCg~~~L~L~~if~~~~i~~L~~~ae~~~~~~~~~~~ 229 (654)
+.........+ ...+ +. +|++|+|.|-|...+||+...|+|||++|..|.+.|+.+||.-+..+-+
T Consensus 421 ~~~~~~~~s~~-----~~~~----~~--~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~--- 486 (889)
T KOG1356|consen 421 DPIEPSLSSVS-----VDEP----SS--ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLS--- 486 (889)
T ss_pred cccccccCCCC-----CCCC----cc--cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccC---
Confidence 65533111111 1111 11 8999999999999999999999999999999999999999999988543
Q ss_pred CCCCCCcccccCCCCCcccccccccccccccCCCCCeeecCCccccccccHHHHHHHhhcCCCEEEecccccCCCCCCCh
Q 039227 230 PHHSGQSCSCFKLNGQIDCCSKSLRKAASREGVSDNYLYCPSATDVQHESLEHFKSHWIKGEPVIITNVLDYSSGLSWEP 309 (654)
Q Consensus 230 ~~~~~~~c~C~~~~~~~~~~~~~~r~aa~re~s~dn~ly~P~~~d~~~~~~~~FQ~hW~~GePViV~~v~~~~~~lsW~P 309 (654)
..+...|.|.. ...+.++++|.|+.+.|||||||.+.+++.+|+.|||+||++|||||||||++++++++|+|
T Consensus 487 -~~~l~~~~~~~------~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P 559 (889)
T KOG1356|consen 487 -KPPLRLCRSSQ------DGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKP 559 (889)
T ss_pred -CchhhcCcccc------ccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcCCcEEehHhhhhccccccch
Confidence 33344444433 24567899999999999999999998899999999999999999999999999999999999
Q ss_pred hHhHHHhhhccccC-CCccceeEEeeCCCCceeecchhHHHhhhccCcCCCCCCceeeecCCCCCchhhHhhccchhhHH
Q 039227 310 MVMSRAVRDTSYSK-GSQKLVVKTVDCLDLCEVKINTYQFFKAYMEGRTHSNSWPVILKLKDWPPSCLFEERLPCHGAEF 388 (654)
Q Consensus 310 ~~~~r~~~e~~~~~-~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~gR~~~~~~p~~LKLKDWPps~~F~e~lP~h~~ef 388 (654)
|+|||+|+++.+.- ...+.++.++||++ ++.+||.||++||++++|||+|||||||||+++|+++||+||+||
T Consensus 560 ~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eel 633 (889)
T KOG1356|consen 560 EALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEEL 633 (889)
T ss_pred HHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHH
Confidence 99999999865433 44455566777766 688999999999999999999999999999999999999999999
Q ss_pred hhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccccCCCCCcccccccccccceeeeecccccCChhHHH
Q 039227 389 MNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVA 468 (654)
Q Consensus 389 i~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~ 468 (654)
|++|||||||+ ++|+||||++||.+|++||||||||||||+++++|||||||||||||||||||||||++++. +..
T Consensus 634 l~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~---~~~ 709 (889)
T KOG1356|consen 634 LASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG---QIE 709 (889)
T ss_pred HHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheeeeccCCc---hHH
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999886 556
Q ss_pred HHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCCcccccccCCCCCcceeeeecCCChhHHHHHHHHHH
Q 039227 469 EIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSMQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHH 548 (654)
Q Consensus 469 ~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~ 548 (654)
.|+++++++.+++..|+... ++....+.+||||||||||||+|||+||+||+
T Consensus 710 ~~~~~~k~~~~~~~de~~~~----------------------------~~~~~~e~~GALWhIF~~~Dv~KireyL~k~~ 761 (889)
T KOG1356|consen 710 QIAKVLKKIQEGDLDEITRS----------------------------RISSVSETPGALWHIFRAQDVPKIREYLRKVC 761 (889)
T ss_pred hHHHHHHhhhhcchhhhhhh----------------------------hccccccCCcchhhhhhhcchHHHHHHHHHhh
Confidence 67788888877765554221 12234578999999999999999999999999
Q ss_pred hhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 549 KEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 549 ~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
+||+| ++.+++||||||+||||.+||+|||||||||||||+|++|||||||||||||||||+||||||+|||||||
T Consensus 762 ~E~~~----~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~ 837 (889)
T KOG1356|consen 762 KEQGH----EVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEH 837 (889)
T ss_pred HHhcC----CCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhh
Confidence 99998 68899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCCchhccccccCC
Q 039227 629 INECIRLTDEFRTLPRNHRAKKDKLQ 654 (654)
Q Consensus 629 V~ec~~Lt~EfR~Lp~~h~~keDkLe 654 (654)
|.||+|||+|||+||++|.|||||||
T Consensus 838 v~ec~rLT~EfR~Lp~~h~~~eDKLq 863 (889)
T KOG1356|consen 838 VSECFRLTQEFRQLPQNHKNHEDKLQ 863 (889)
T ss_pred HHHHHHHHHHHhhCCCcccchHHHHH
Confidence 99999999999999999999999997
No 2
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.58 E-value=1.1e-15 Score=135.93 Aligned_cols=85 Identities=31% Similarity=0.462 Sum_probs=63.3
Q ss_pred CcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecC
Q 039227 525 GGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPA 604 (654)
Q Consensus 525 ~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPA 604 (654)
+..+|-+++++|.+|++++++++.. ..+|+| +..+.+.-.+.. ..+.||+.|+|+|++||+||||+
T Consensus 30 ~~k~W~~v~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~p~~-l~~~gi~~~~~~Q~~Ge~V~i~p 95 (114)
T PF02373_consen 30 GSKVWYIVPPEDADKFEKFLRSKES------------QNCPQF-LDHKNIFVSPEQ-LKKAGIPVYRFVQKPGEFVFIPP 95 (114)
T ss_dssp SEEEEEEE-GGGHHHHHHHHHHHHH------------HHSTTG-GCTGGEEEGHHH-HHHTTS--EEEEEETT-EEEE-T
T ss_pred cceEeEEechhhhhhHHHHHhhccc------------cccccc-ccccccccceee-eeccCcccccceECCCCEEEECC
Confidence 4679999999999999999998721 134444 333333333333 67799999999999999999999
Q ss_pred CCccccccccccchhhccc
Q 039227 605 GCPHQVRNLMSCTKIALDF 623 (654)
Q Consensus 605 GcPHQVrNL~SCIKVA~DF 623 (654)
|++|||.|+-.||++|.+|
T Consensus 96 g~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 96 GAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp T-EEEEEESSSEEEEEEEE
T ss_pred CceEEEEeCCceEEEEecC
Confidence 9999999999999999988
No 3
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.16 E-value=2.3e-11 Score=120.88 Aligned_cols=40 Identities=33% Similarity=0.531 Sum_probs=33.1
Q ss_pred cceEEEeecCceEEecCCCccccccc--cc-cchhhccccCcc
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNL--MS-CTKIALDFVSPE 627 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL--~S-CIKVA~DFVSPE 627 (654)
.+|.+++.+||++|||+|-.|||+|| .. ||.|...|.+|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 4
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.03 E-value=0.00037 Score=55.93 Aligned_cols=54 Identities=41% Similarity=0.628 Sum_probs=42.8
Q ss_pred HHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccccCCCCCcccccccccccceeeeecc
Q 039227 387 EFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELGRGDSVTKLHCDMSDAVNVLMHTA 458 (654)
Q Consensus 387 efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~elG~gdSvTkLH~DmSDAVNiL~h~a 458 (654)
..+..||. .+||+++++.....|+. +|+.+|. .+|+|.+|+|..|.+|++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEecC
Confidence 34566776 67999999988877777 6666674 3689999999999999987654
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.43 E-value=0.0028 Score=68.76 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=44.8
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHH
Q 039227 584 EFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIR 634 (654)
Q Consensus 584 EyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~ 634 (654)
++.+.+.++.|.+||+||+|.|==|||-||-.+|.|--.++--=|+..=.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~ 312 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWD 312 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHH
Confidence 345667899999999999999999999999999999999988877776555
No 6
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=95.08 E-value=0.008 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=20.6
Q ss_pred hhCcCCCCCcccccccCCCccccc
Q 039227 8 KSCPFCCRNCNCNACLHNSEIVKV 31 (654)
Q Consensus 8 ~~CP~CrgnCNCk~CLr~~~~ik~ 31 (654)
-.||.|||+|||.+|+|.++...+
T Consensus 62 W~CP~CrgiCnCs~Crrk~g~~PT 85 (105)
T PF10497_consen 62 WKCPKCRGICNCSFCRRKRGWAPT 85 (105)
T ss_pred eECCCCCCeeCCHhhhccCCCCCc
Confidence 459999999999999999986443
No 7
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.41 E-value=0.033 Score=45.25 Aligned_cols=26 Identities=42% Similarity=0.626 Sum_probs=22.2
Q ss_pred EEEeecCceEEecCCCcccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998753
No 8
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.31 E-value=0.032 Score=51.65 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccccc--chhhc
Q 039227 559 VEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSC--TKIAL 621 (654)
Q Consensus 559 ~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SC--IKVA~ 621 (654)
+....||-++|.+|..+-.-+ |.+++=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 56 ~~~H~hp~~~~~~~Vl~G~~~-----~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 56 IPWHTHPLGEQTIYVLEGEGT-----VQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred cccccCCCcceEEEEEecEEE-----EEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 455789989999999876543 55556666778999999999999999999999 44443
No 9
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=92.79 E-value=0.062 Score=57.78 Aligned_cols=235 Identities=23% Similarity=0.399 Sum_probs=131.1
Q ss_pred ccHHHHHHHhhcC-CCEEEecccccC-CCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 278 ESLEHFKSHWIKG-EPVIITNVLDYS-SGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 278 ~~~~~FQ~hW~~G-ePViV~~v~~~~-~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
-.+..|-+...+- .|||++|+.+.- -.-.|+-..+.+-+++..- +.=.=-++.-|.+.++.|+. |.++
T Consensus 62 isveeF~~~ferp~kPVll~g~~DgW~A~ekWT~drLskkyrnq~F---------kcged~~gnsv~MKmkyY~~-Ym~~ 131 (407)
T KOG2130|consen 62 ISVEEFIERFERPYKPVLLSGLTDGWPASEKWTLDRLSKKYRNQKF---------KCGEDNNGNSVKMKMKYYIE-YMKS 131 (407)
T ss_pred CCHHHHHHHhcccCCceEeeccccCCchhhhhhHHHHHHHhcCccc---------cccccCCCcceeeeHHHHHH-HHhc
Confidence 3578888888665 999999998762 2336887777777765221 11011135567788888877 6665
Q ss_pred cCCCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccccC
Q 039227 356 RTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELG 435 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~elG 435 (654)
-.++. |..+ -| +.|.|.-|++ .+..---+|-|-. +-.+-.| -. --+|+ --++-.|
T Consensus 132 ~Rdds--PLYi--FD----ssFgE~~~~r--kLl~dY~VPk~F~--dDlF~y~---g~-e~RPp---yRWfvmG------ 186 (407)
T KOG2130|consen 132 TRDDS--PLYI--FD----SSFGEHAPRR--KLLEDYSVPKYFR--DDLFQYL---GE-ERRPP---YRWFVMG------ 186 (407)
T ss_pred cccCC--CeEE--ec----chhhcccchh--hhhhhcCcchhhh--HHHHHhc---Cc-ccCCC---ceeEEec------
Confidence 33332 2221 11 3566665543 3433333333332 2222222 11 11222 2222223
Q ss_pred CCCCccccccccc--ccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCC
Q 039227 436 RGDSVTKLHCDMS--DAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSM 513 (654)
Q Consensus 436 ~gdSvTkLH~DmS--DAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 513 (654)
...|.|-.|+|-- -|=|-|+
T Consensus 187 ParSGtsiHIDPlgTSAWNtll---------------------------------------------------------- 208 (407)
T KOG2130|consen 187 PARSGTSIHIDPLGTSAWNTLL---------------------------------------------------------- 208 (407)
T ss_pred CCCCCceeEECCcchHHHHHHh----------------------------------------------------------
Confidence 2235588888742 1222211
Q ss_pred cccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHH---HHHhCccce
Q 039227 514 QSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKL---KEEFGVEPW 590 (654)
Q Consensus 514 ~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rL---keEyGVepw 590 (654)
+|---|-+|++.-++-| ++-+..| ...+|.---+||-+-.-|.+| -+|| +|-
T Consensus 209 ----------~GhKrW~LfPp~~p~~l---vkv~~~e----------~g~~~de~itwf~~~y~rt~~Pswp~E~--kPI 263 (407)
T KOG2130|consen 209 ----------QGHKRWVLFPPGTPPEL---VKVTVDE----------GGKQPDEIITWFSTIYPRTQLPSWPDEY--KPI 263 (407)
T ss_pred ----------hccceeEEcCCCCCCCc---eeecccc----------cCCCCcceechhhhccccccCCCCcccc--CCc
Confidence 23345666666555443 1111111 112333333455555444442 2344 577
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCccChH
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
...|.+||.||||.|==|=|-||--.|-|++.|+|=||..
T Consensus 264 Ec~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 264 ECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred eeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 7899999999999999999999999999999999999964
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.35 E-value=0.17 Score=47.19 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=29.2
Q ss_pred ceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
.=.++=+.||+|+||||.||.++|.-+.-=+.++=-+|+.
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~ 113 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPY 113 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCc
Confidence 5667778999999999999999999883323333334443
No 11
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=87.99 E-value=0.26 Score=51.65 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=24.2
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
|.+.+=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 445555666678999999999999999963
No 12
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.41 E-value=0.88 Score=43.10 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.5
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.+-.+||...||+|.|||--|+.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 13
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=83.40 E-value=0.7 Score=45.46 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.8
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
+-|..=++.-..||+++||||.||..+|..+.--+++-+++|-
T Consensus 141 ~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 141 LTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred EEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 5566777888999999999999999999877766667777764
No 14
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=82.48 E-value=0.7 Score=43.52 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=26.8
Q ss_pred ceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
.=++.=..||+++||||-||+.+|...+.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 444556789999999999999999855443333 4553
No 15
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=81.37 E-value=0.76 Score=48.99 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=13.7
Q ss_pred ecCceEEecCCCccc
Q 039227 595 QLGEAVLIPAGCPHQ 609 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQ 609 (654)
++||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 479999999999995
No 16
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=79.58 E-value=1.1 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.3
Q ss_pred ecCceEEecCCCcccccccccc
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SC 616 (654)
..||.|+||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5799999999999999997654
No 17
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=79.11 E-value=0.99 Score=50.17 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.8
Q ss_pred EeecCceEEecCCCccc
Q 039227 593 VQQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQ 609 (654)
.=++|||+|||||.||=
T Consensus 240 ~l~pGeaifipAg~~HA 256 (389)
T PRK15131 240 KLNPGEAMFLFAETPHA 256 (389)
T ss_pred EeCCCCEEEeCCCCCeE
Confidence 34689999999999996
No 18
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=75.21 E-value=2.1 Score=43.28 Aligned_cols=28 Identities=18% Similarity=0.123 Sum_probs=25.3
Q ss_pred ceEEEeecCceEEecCCCcccccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
.+.+.=.+||+|+||+|..|++.|.-+.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 7888899999999999999999997653
No 19
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=75.18 E-value=1.5 Score=47.57 Aligned_cols=18 Identities=44% Similarity=0.796 Sum_probs=15.8
Q ss_pred EEeecCceEEecCCCccc
Q 039227 592 FVQQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQ 609 (654)
+.=++|||+|||||.||=
T Consensus 160 v~lkpGe~~fl~Agt~HA 177 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHA 177 (312)
T ss_pred EecCCCCEEEecCCCcee
Confidence 555789999999999996
No 20
>PLN02288 mannose-6-phosphate isomerase
Probab=71.52 E-value=2 Score=47.96 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.3
Q ss_pred eecCceEEecCCCccc
Q 039227 594 QQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQ 609 (654)
=.+|||||||||.||=
T Consensus 255 L~PGeaifl~ag~~HA 270 (394)
T PLN02288 255 LNPGEALYLGANEPHA 270 (394)
T ss_pred cCCCCEEEecCCCCce
Confidence 3589999999999995
No 21
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=70.31 E-value=6.6 Score=43.50 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=39.7
Q ss_pred eecCCccccccc--cHHHHHHHh-hcCCCEEEecccccCCCC-CCChh-HhHHHhhh
Q 039227 267 LYCPSATDVQHE--SLEHFKSHW-IKGEPVIITNVLDYSSGL-SWEPM-VMSRAVRD 318 (654)
Q Consensus 267 ly~P~~~d~~~~--~~~~FQ~hW-~~GePViV~~v~~~~~~l-sW~P~-~~~r~~~e 318 (654)
|--|++.+..+. ...+|-+-| .+..|||+|+.+..-..+ .|.+. ++..++++
T Consensus 18 lcvp~~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 18 LCVPVLVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred cccccccccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 345666655443 347888888 789999999999877777 89988 88888875
No 22
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=65.74 E-value=2.9 Score=40.69 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=39.3
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCP 607 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcP 607 (654)
..-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|-.
T Consensus 17 ~~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 17 FTAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred hcCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 3569999999999999999999999999987 6799999988853
No 23
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=65.47 E-value=2.8 Score=47.44 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=24.7
Q ss_pred ccceEEEeecCceEEecCCCcccccccccc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
+.+=++.=..||.|+||+|.||+.+|.-+-
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~ 441 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKI 441 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCC
Confidence 344566678999999999999999998653
No 24
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=65.36 E-value=4.3 Score=38.28 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=25.1
Q ss_pred EEEee----cCceEEecCCCccccccc--cccchhhccccC
Q 039227 591 SFVQQ----LGEAVLIPAGCPHQVRNL--MSCTKIALDFVS 625 (654)
Q Consensus 591 tf~Q~----~GeAVFIPAGcPHQVrNL--~SCIKVA~DFVS 625 (654)
.+.|. .||.++||+|.||=+.|. .+.+.++.=+.+
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~ 121 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTN 121 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEES
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECC
Confidence 45565 999999999999999999 566666554443
No 25
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=61.71 E-value=4.3 Score=31.55 Aligned_cols=20 Identities=35% Similarity=0.823 Sum_probs=15.7
Q ss_pred ccccccCCCC-CcchhhhhhH
Q 039227 102 FDYYRSCPRC-SYDLCLTCCR 121 (654)
Q Consensus 102 ~D~HRsC~~C-sydLCL~CC~ 121 (654)
..+.=.|..| .||||..|-.
T Consensus 11 ~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 11 VGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred cCCeEECCCCCCccchHHhhC
Confidence 4455568889 7999999976
No 26
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=61.34 E-value=4.7 Score=46.11 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=24.8
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..=++.=.+||.|+||+|.||+.+|.-+
T Consensus 419 v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 419 VTIDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 3444555666899999999999999999854
No 27
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=58.90 E-value=4.9 Score=31.86 Aligned_cols=18 Identities=39% Similarity=1.093 Sum_probs=15.8
Q ss_pred ccccCCCC-CcchhhhhhH
Q 039227 104 YYRSCPRC-SYDLCLTCCR 121 (654)
Q Consensus 104 ~HRsC~~C-sydLCL~CC~ 121 (654)
++=.|..| .||||+.|-.
T Consensus 14 ~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 14 IRIKCAECPDFDLCLECFS 32 (49)
T ss_pred cEEECCCCCCcchhHHhhh
Confidence 66679999 8999999988
No 28
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=58.55 E-value=5.2 Score=31.52 Aligned_cols=20 Identities=40% Similarity=1.041 Sum_probs=16.3
Q ss_pred ccccccCCCC-CcchhhhhhH
Q 039227 102 FDYYRSCPRC-SYDLCLTCCR 121 (654)
Q Consensus 102 ~D~HRsC~~C-sydLCL~CC~ 121 (654)
.-+.=.|..| .||||..|-.
T Consensus 12 ~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 12 IGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred ccCeEECCCCCCccchHHHhC
Confidence 4556678889 7999999987
No 29
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=57.48 E-value=8.3 Score=36.44 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred cceEEEeecCceEEecCCCcccccccc
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+-+++.-..||+++||+|.+|+..|.-
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 557888899999999999999999974
No 30
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=56.58 E-value=8.5 Score=41.43 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=31.1
Q ss_pred eEEEeecCceEEecCCCccccccccccchhhccccCccChH
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
..|+=.+||..+||.|++|++.....|+.+++-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 35777899999999999999999999999999999984444
No 31
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=55.56 E-value=5.5 Score=37.73 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=37.2
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
.-|.|...-.+.+.+-+.|+++|||..|.| +.||-|.|=||-
T Consensus 17 ~a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 17 NAPLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred cCCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 458888888899999999999999999987 489999999885
No 32
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=54.94 E-value=6.8 Score=38.61 Aligned_cols=41 Identities=32% Similarity=0.382 Sum_probs=24.3
Q ss_pred CcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 039227 569 QTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 569 Q~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
++.||...+ ++|.-+|=.|.=.++.-.-||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 456777443 37999999999999999999999999999954
No 33
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=53.12 E-value=9.8 Score=39.97 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 039227 564 HPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 564 dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
|+-.++-+|+-.---. .-+.+-++.=..||+++||||.||..+|..+
T Consensus 77 ~~g~ee~iyVl~G~l~-----v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEVN-----VTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEEE-----EEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 3444455665443311 2345667777889999999999999999763
No 34
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=51.65 E-value=9.6 Score=42.17 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=35.6
Q ss_pred CcccCCcccCcceeCHHH-HHHHHHHhCccceEEEeecCceEEecCCCcccccccccc
Q 039227 560 EQVVHPIHDQTFYLNMYH-KKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 560 ~~v~dPIhdQ~~YL~~~h-r~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
....||--+..+|+-.-. +..+-..-| ...++.=..||++|||+|.+|.++|.-+-
T Consensus 259 ~~H~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e 315 (367)
T TIGR03404 259 ELHWHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDE 315 (367)
T ss_pred CCeeCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCC
Confidence 345677666655544332 221111111 35667778999999999999999999753
No 35
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=49.57 E-value=5.8 Score=43.80 Aligned_cols=16 Identities=56% Similarity=0.964 Sum_probs=13.0
Q ss_pred eecCceEEecCCCccc
Q 039227 594 QQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQ 609 (654)
=.+|||+|+|||.||-
T Consensus 254 L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 254 LQPGEAIFLPAGEPHA 269 (373)
T ss_dssp E-TT-EEEEHTTHHEE
T ss_pred ecCCceEEecCCCccc
Confidence 3599999999999997
No 36
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=47.27 E-value=10 Score=29.55 Aligned_cols=23 Identities=26% Similarity=0.706 Sum_probs=17.6
Q ss_pred ccccccCCCCC-cchhhhhhHHhh
Q 039227 102 FDYYRSCPRCS-YDLCLTCCREIR 124 (654)
Q Consensus 102 ~D~HRsC~~Cs-ydLCL~CC~ElR 124 (654)
...+=.|..|. ||||..|-.+-.
T Consensus 11 ~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 11 VGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred cCCEEECCCCCCCcCHHHHHCcCc
Confidence 44555788888 999999988443
No 37
>PRK11171 hypothetical protein; Provisional
Probab=45.45 E-value=12 Score=39.44 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.4
Q ss_pred ccceEEEeecCceEEecCCCcccccccc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+..=++.=..||.|+||||.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3444667788999999999999999975
No 38
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=42.93 E-value=8.5 Score=34.29 Aligned_cols=71 Identities=24% Similarity=0.385 Sum_probs=44.3
Q ss_pred eecCCChhHHHHHHHHHHhhhc-ccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccc
Q 039227 531 IFRREDVPKLGEYLRNHHKEFR-HVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 531 IFrrqD~~KLreyL~kh~~Ef~-~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQ 609 (654)
-|.|...++|.+|.++.-..-. .+.-.. .....||-. ||+++.++.|.+.+|.++ ||+||+=||-.+.
T Consensus 22 ~~srk~id~l~~~ak~~ga~gL~~ikv~~-~~~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~ 90 (95)
T PF02938_consen 22 KLSRKQIDKLEEFAKKFGAKGLAWIKVEE-GELKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEI 90 (95)
T ss_dssp TTTHCCCCCCCCHHHHCCHCHCCCEEEST-CEEECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCceeeeEcC-CcccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHH
Confidence 3556667777777754322110 000000 223445533 599999999999999974 9999999999888
Q ss_pred ccc
Q 039227 610 VRN 612 (654)
Q Consensus 610 VrN 612 (654)
|++
T Consensus 91 v~~ 93 (95)
T PF02938_consen 91 VNK 93 (95)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 39
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=41.55 E-value=21 Score=35.73 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEe-ecCceEEecCCCcccc
Q 039227 538 PKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQ-QLGEAVLIPAGCPHQV 610 (654)
Q Consensus 538 ~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q-~~GeAVFIPAGcPHQV 610 (654)
+||..|...|..++. .+-=|-+++-|.|.+-+. +-|-=++ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~de---------eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHEDE---------EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCchh---------heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 688888877776543 234567888999988766 6775444 4699999999998863
No 40
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=41.45 E-value=13 Score=28.76 Aligned_cols=21 Identities=38% Similarity=1.005 Sum_probs=16.4
Q ss_pred ccccccCCCC-CcchhhhhhHH
Q 039227 102 FDYYRSCPRC-SYDLCLTCCRE 122 (654)
Q Consensus 102 ~D~HRsC~~C-sydLCL~CC~E 122 (654)
.-..+.|..| .||||..|-..
T Consensus 10 ~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 10 VETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CCCceECCCCcchhhHHHHhCC
Confidence 3356778888 89999999764
No 41
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=40.79 E-value=12 Score=41.34 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=9.9
Q ss_pred cCceEEecCCCc
Q 039227 596 LGEAVLIPAGCP 607 (654)
Q Consensus 596 ~GeAVFIPAGcP 607 (654)
.-||||||||--
T Consensus 302 EkdaVfIPAGWD 313 (473)
T KOG3905|consen 302 EKDAVFIPAGWD 313 (473)
T ss_pred ecceeEeccCCC
Confidence 469999999953
No 42
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=40.38 E-value=15 Score=29.12 Aligned_cols=21 Identities=24% Similarity=0.733 Sum_probs=16.2
Q ss_pred ccccccCCCCC-cchhhhhhHH
Q 039227 102 FDYYRSCPRCS-YDLCLTCCRE 122 (654)
Q Consensus 102 ~D~HRsC~~Cs-ydLCL~CC~E 122 (654)
+-..=.|..|. ||||..|-..
T Consensus 12 ~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 12 NGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred ccCeEECCCCCCccchHHhhCC
Confidence 44555688887 9999999764
No 43
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=39.78 E-value=20 Score=38.03 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.3
Q ss_pred hCccceEEEeecCceEEecCCCcccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
|-|.+-++.-.+||+||||+|.||+......|
T Consensus 59 ~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 59 YLINNEKVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EEECCEEEEEcCCcEEEEecCCcccccccCCC
Confidence 67788899999999999999999997655544
No 44
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=39.78 E-value=18 Score=36.51 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=36.8
Q ss_pred ceEEEeecCceEEecCCCccccccccccchhhccccCccChHH
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINE 631 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~e 631 (654)
..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.
T Consensus 75 ~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d 117 (177)
T PRK13264 75 RRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELD 117 (177)
T ss_pred eeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCcc
Confidence 3678889999999999999999888999988888777776544
No 45
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=38.48 E-value=17 Score=40.80 Aligned_cols=46 Identities=33% Similarity=0.547 Sum_probs=39.5
Q ss_pred cccccccccccCCCCCeeecCC--ccccccccHHHH-HHHhhcCCCEEEe
Q 039227 250 SKSLRKAASREGVSDNYLYCPS--ATDVQHESLEHF-KSHWIKGEPVIIT 296 (654)
Q Consensus 250 ~~~~r~aa~re~s~dn~ly~P~--~~d~~~~~~~~F-Q~hW~~GePViV~ 296 (654)
-+++-+||+|. +-.|=||||. ..-+.-.++++| ++|..+|.-|+|.
T Consensus 158 ~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 158 IEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 35788999999 8899999996 666778899999 6899999999885
No 46
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=38.06 E-value=19 Score=33.80 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=38.8
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCP 607 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcP 607 (654)
.-|+|...-++...+=+.|+++||++.+.| +-||-|-|=+|-=
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDF 55 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCC
Confidence 569999999999999999999999999976 6899999998853
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=37.35 E-value=18 Score=30.81 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=12.8
Q ss_pred EEEeecCceEEecCCCc
Q 039227 591 SFVQQLGEAVLIPAGCP 607 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcP 607 (654)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 34557999999999984
No 48
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=37.08 E-value=20 Score=35.52 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=38.7
Q ss_pred cceEEEeecCceEEecCCCccccccccccchhhccccCccChHHH
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINEC 632 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec 632 (654)
+..++.=..||..+||+|.||..+--..||=+.+.=.+|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 346788889999999999999998889999999888888886653
No 49
>PF12852 Cupin_6: Cupin
Probab=34.97 E-value=22 Score=34.62 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEeecCceEEecCCCcccccccc
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+.=..||.||+|.|.||...--.
T Consensus 57 ~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 57 IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEecCCCEEEEcCCCCeEeCCCC
Confidence 44567999999999999985433
No 50
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=34.08 E-value=45 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhhcHHHhhhHhhh
Q 039227 50 YLLRLLYPFLRKFHHDQVKEKKIE 73 (654)
Q Consensus 50 yLL~~LLP~Lkqi~~EQ~~E~EiE 73 (654)
+.|-+++|.+|++...|..+.+++
T Consensus 6 ~Fl~Sl~p~~k~L~~~~k~~~k~~ 29 (37)
T PF02944_consen 6 LFLLSLLPHMKRLPPKQKLKFKMK 29 (37)
T ss_pred HHHHHhHHHHHhCCHHHHHHHHHH
Confidence 567889999999999999886665
No 51
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=33.92 E-value=21 Score=28.57 Aligned_cols=21 Identities=29% Similarity=0.782 Sum_probs=16.1
Q ss_pred ccccccCCCCC---cchhhhhhHH
Q 039227 102 FDYYRSCPRCS---YDLCLTCCRE 122 (654)
Q Consensus 102 ~D~HRsC~~Cs---ydLCL~CC~E 122 (654)
+.+.=.|..|. ||||..|-..
T Consensus 12 ~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 12 PGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred ccceEECCCCCCCCCccCHHHHhC
Confidence 44455688887 9999999874
No 52
>PRK11171 hypothetical protein; Provisional
Probab=33.41 E-value=25 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=27.1
Q ss_pred HhCccceEEEeecCceEEecCCCcccccccc
Q 039227 584 EFGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 584 EyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
++.+.+-++.=..||++++|+++||+.+|.-
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 3667788888889999999999999999963
No 53
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=32.76 E-value=31 Score=24.72 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHHhhhc
Q 039227 536 DVPKLGEYLRNHHKEFR 552 (654)
Q Consensus 536 D~~KLreyL~kh~~Ef~ 552 (654)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999998875
No 54
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=31.46 E-value=23 Score=27.72 Aligned_cols=21 Identities=38% Similarity=0.814 Sum_probs=13.5
Q ss_pred ccccCCCCC-cchhhhhhHHhh
Q 039227 104 YYRSCPRCS-YDLCLTCCREIR 124 (654)
Q Consensus 104 ~HRsC~~Cs-ydLCL~CC~ElR 124 (654)
..=.|..|. ||||..|-.+-+
T Consensus 18 ~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 18 VRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SEEEESSSSS-EEEHHHHHH--
T ss_pred CeEECCCCCCCchhhHHHhCcC
Confidence 344567776 999999987633
No 55
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.99 E-value=35 Score=37.83 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.2
Q ss_pred cceEEEeecCceEEecCCCccccccccc
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+-+++.=..||.++||+|.+|-.+|...
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~ 135 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDE 135 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCC
Confidence 3445567899999999999999999854
No 56
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=29.73 E-value=40 Score=33.27 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=16.0
Q ss_pred ccceEEEeecCceEEecCCCc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCP 607 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcP 607 (654)
+.+-++.=++||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 568899999999999999963
No 57
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=29.49 E-value=30 Score=36.28 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=49.9
Q ss_pred cceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 039227 526 GALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAG 605 (654)
Q Consensus 526 GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAG 605 (654)
=.+-|+|-.+|-+.|- .-|-.+... ....+--|||.+|+-.-.-. +-|.+=++.=.+||.+|||.|
T Consensus 143 v~~~d~~~~~d~s~m~-------aGf~~~~~~--sf~wtl~~dEi~YVLEGe~~-----l~IdG~t~~l~pGDvlfIPkG 208 (233)
T PRK15457 143 VGLTDLVTGDDGSSMA-------AGFMQWENA--FFPWTLNYDEIDMVLEGELH-----VRHEGETMIAKAGDVMFIPKG 208 (233)
T ss_pred EEeeeeeccCCCCcee-------eEEEEEecC--ccceeccceEEEEEEEeEEE-----EEECCEEEEeCCCcEEEECCC
Confidence 3455777777777762 222222222 23367778888887665433 778899999999999999999
Q ss_pred Ccccccc
Q 039227 606 CPHQVRN 612 (654)
Q Consensus 606 cPHQVrN 612 (654)
.+|.-.+
T Consensus 209 s~~hf~t 215 (233)
T PRK15457 209 SSIEFGT 215 (233)
T ss_pred CeEEecC
Confidence 9977544
No 58
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=26.69 E-value=37 Score=29.78 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=24.9
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc--ccchhhccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM--SCTKIALDF 623 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~--SCIKVA~DF 623 (654)
+.|..=++.=.+||++|||+|-+|...--. .+....+.|
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 455666677889999999999999977666 555555554
No 59
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=26.62 E-value=32 Score=26.55 Aligned_cols=20 Identities=40% Similarity=0.996 Sum_probs=15.5
Q ss_pred cCCCC-CcchhhhhhHHhhhc
Q 039227 107 SCPRC-SYDLCLTCCREIRDG 126 (654)
Q Consensus 107 sC~~C-sydLCL~CC~ElR~g 126 (654)
.|..| .||||..|-.+-|.+
T Consensus 20 ~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 20 HCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred ECCCCCCccchHHHHhCcCcC
Confidence 47777 799999998855444
No 60
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=26.20 E-value=31 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCCcccccccCCCcccc
Q 039227 14 CRNCNCNACLHNSEIVK 30 (654)
Q Consensus 14 rgnCNCk~CLr~~~~ik 30 (654)
-.||+|-.||++++.+-
T Consensus 14 n~n~~~G~CL~~~~~~A 30 (35)
T PF08115_consen 14 NHNDCCGSCLCSNGPHA 30 (35)
T ss_pred cCCCcccceeccCCccC
Confidence 46999999999998753
No 61
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=25.75 E-value=27 Score=25.76 Aligned_cols=21 Identities=43% Similarity=0.439 Sum_probs=17.8
Q ss_pred CCCcccccccccccceeeeec
Q 039227 437 GDSVTKLHCDMSDAVNVLMHT 457 (654)
Q Consensus 437 gdSvTkLH~DmSDAVNiL~h~ 457 (654)
|-|||+||+=--.-||+|.-+
T Consensus 3 glsvt~lhlfrde~vnflfci 23 (35)
T PF13216_consen 3 GLSVTNLHLFRDEKVNFLFCI 23 (35)
T ss_pred ceEEEEEEEeecCCccEEEEe
Confidence 678999998777889999764
No 62
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=25.64 E-value=45 Score=34.29 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.5
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+.|..=++.=..||+||||+|.+|+++.-.
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCC
Confidence 666666777789999999999999986543
No 63
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=25.11 E-value=71 Score=37.65 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccccC---CCCCccccccc
Q 039227 370 DWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELG---RGDSVTKLHCD 446 (654)
Q Consensus 370 DWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~elG---~gdSvTkLH~D 446 (654)
.|--...++.+-|-+.+.=|+++|+|-|++| .++-|.--|+|.|-|+.-.-| +|+||.---+=
T Consensus 536 GWSLP~kykq~t~gq~e~~mknvPvPVycRP--------------L~~kdpsmKlWCA~GVnLsGgr~~~g~~vvG~~v~ 601 (832)
T KOG2077|consen 536 GWSLPQKYKQVTNGQGENKMKNVPVPVYCRP--------------LDKKDPSMKLWCAVGVNLSGGRTRDGGSVVGASVF 601 (832)
T ss_pred ccccchhhhccCCCccccccccCCcceeecc--------------cccCCcceeeeeecceeccCCccCCCCccccCccc
Confidence 4444556777888899999999999999997 356677889999999875544 36666655555
Q ss_pred ccccceeeeeccc
Q 039227 447 MSDAVNVLMHTAK 459 (654)
Q Consensus 447 mSDAVNiL~h~ae 459 (654)
-+++.-.++-+++
T Consensus 602 ~ap~~~~~T~~s~ 614 (832)
T KOG2077|consen 602 YAPVAGLDTEGSK 614 (832)
T ss_pred ccCccCccccccc
Confidence 5666666665544
No 64
>PRK13501 transcriptional activator RhaR; Provisional
Probab=24.46 E-value=42 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.9
Q ss_pred hCccceEEEeecCceEEecCCCcccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRN 612 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrN 612 (654)
+-|.+-++.=..||.||||+|.+|+++.
T Consensus 51 ~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 51 HVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred EEECCeeeeecCCeEEEEcCCCcccccc
Confidence 5577777888899999999999999764
No 65
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=23.86 E-value=59 Score=31.90 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.3
Q ss_pred CccceEEEeecCceEEecCCCccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQ 609 (654)
|-.+=.++=..||+++||||.-|-
T Consensus 81 G~~G~el~v~~GDvlliPAGvGH~ 104 (163)
T COG4297 81 GADGQELEVGEGDVLLIPAGVGHC 104 (163)
T ss_pred CCCCceeeecCCCEEEEecCcccc
Confidence 345566777899999999999984
No 66
>PRK13503 transcriptional activator RhaS; Provisional
Probab=23.74 E-value=32 Score=35.11 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=23.4
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..=++.=..||++|||+|.+|...+..+
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 4444445556789999999999998776654
No 67
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=22.73 E-value=39 Score=26.85 Aligned_cols=14 Identities=50% Similarity=1.338 Sum_probs=11.0
Q ss_pred CCCC-CcchhhhhhH
Q 039227 108 CPRC-SYDLCLTCCR 121 (654)
Q Consensus 108 C~~C-sydLCL~CC~ 121 (654)
|..| .||||..|-.
T Consensus 18 C~~C~d~dlC~~Cf~ 32 (49)
T cd02338 18 CLICYDYDLCADCYD 32 (49)
T ss_pred eCCCCCCccchhHHh
Confidence 4444 5999999987
No 68
>PF14816 FAM178: Family of unknown function, FAM178
Probab=22.34 E-value=50 Score=37.05 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.5
Q ss_pred eeCHHHHHHHHHHhCccceEEE-eecCceEE
Q 039227 572 YLNMYHKKKLKEEFGVEPWSFV-QQLGEAVL 601 (654)
Q Consensus 572 YL~~~hr~rLkeEyGVepwtf~-Q~~GeAVF 601 (654)
=|+.|||. +.|.|+|..-.|- +|+||.||
T Consensus 62 ~l~~Ehr~-~lekfsv~~~~Ip~~HPGE~IF 91 (377)
T PF14816_consen 62 DLTPEHRE-FLEKFSVSLQAIPDVHPGEEIF 91 (377)
T ss_pred cCCHHHHH-HHHHhchhhccCCCCCCchhhc
Confidence 35789977 7789999988885 78899999
No 69
>PRK13502 transcriptional activator RhaR; Provisional
Probab=22.34 E-value=65 Score=33.17 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=23.5
Q ss_pred hCccceEEEeecCceEEecCCCcccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRN 612 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrN 612 (654)
+-|++=++.-.+||++|||+|.+|....
T Consensus 51 ~~i~~~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 51 HVLNERPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEECCEEEeecCCcEEEECCCCcccccc
Confidence 4566777888899999999999998754
No 70
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=21.32 E-value=25 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred ccCcceeCHHHHHHHHHHhCccceEEEeecCceE
Q 039227 567 HDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAV 600 (654)
Q Consensus 567 hdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAV 600 (654)
||-+++=|.+.++ |..+||.++|.++.++=+.+
T Consensus 4 ~dv~~~~D~ki~~-l~~~~G~~G~~~y~~ll~~i 36 (87)
T PF14297_consen 4 LDVDFFSDPKIRR-LMAEYGCEGYGIYWYLLEYI 36 (87)
T ss_pred cccccccCHHHHH-HHHHcCCchHHHHHHHHHHH
Confidence 6778888888865 99999999998877654444
No 71
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=75 Score=28.77 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=38.1
Q ss_pred eeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHHHHccCCchhccc
Q 039227 572 YLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTDEFRTLPRNHRAK 649 (654)
Q Consensus 572 YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~EfR~Lp~~h~~k 649 (654)
+++.+-+..|..|||+. .+|.+.. |.||-||. .+-..||+=|..=|++|.+|
T Consensus 2 ~~~~~~k~~l~~eyg~~-------~~dtgs~----evq~a~Lt---------------~ri~~L~~Hlk~hkKD~~sr 53 (89)
T COG0184 2 SLTSEIKQELRDEYGIP-------EVDTGSG----EVQLALLT---------------ERINNLTEHLKEHKKDHHSR 53 (89)
T ss_pred CchHHHHHHHHHHhCCC-------CCCCCCc----HHHHHHHH---------------HHHHHHHHHHHHCCcchhHH
Confidence 67889999999999974 4555443 66776663 45567888888888888765
No 72
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=20.41 E-value=38 Score=37.51 Aligned_cols=29 Identities=45% Similarity=1.174 Sum_probs=22.0
Q ss_pred CCccccccc-----ccccc-cCCCCC-cchhhhhhH
Q 039227 93 SNERLFCNN-----FDYYR-SCPRCS-YDLCLTCCR 121 (654)
Q Consensus 93 ~dErvyCdn-----~D~HR-sC~~Cs-ydLCL~CC~ 121 (654)
--|+|-||- |-|.| -|-.|+ ||||-+|--
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 458888988 55555 377775 999999975
No 73
>PRK10314 putative acyltransferase; Provisional
Probab=20.12 E-value=84 Score=30.00 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.8
Q ss_pred cceeCHHH-HHHHHHHhCccceEEEeecCceEEecCCCccccc
Q 039227 570 TFYLNMYH-KKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVR 611 (654)
Q Consensus 570 ~~YL~~~h-r~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVr 611 (654)
.++|+... ...+++.+|-+ ..|| +|+.+|.||+.-
T Consensus 111 ~i~L~a~~~a~~fY~k~GF~------~~g~-~f~~~Gi~h~~M 146 (153)
T PRK10314 111 PVYLGAQAHLQNFYQSFGFI------PVTE-VYEEDGIPHIGM 146 (153)
T ss_pred cEEEehHHHHHHHHHHCCCE------ECCC-ccccCCCCcHhh
Confidence 46777653 35799998864 3677 799999999853
No 74
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=20.05 E-value=70 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.9
Q ss_pred hCccceEEEeecCceEEecCCCccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVR 611 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVr 611 (654)
+-|.+=++.=..||.+|||+|..|+..
T Consensus 56 ~~i~~~~~~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 56 QEINGKRVLLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred EEECCEEEEECCCcEEEeCCCCcccee
Confidence 556777788889999999999999863
Done!