Query 039227
Match_columns 654
No_of_seqs 158 out of 197
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 12:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 1E-128 5E-133 1024.3 15.5 333 277-654 21-356 (392)
2 4gjz_A Lysine-specific demethy 99.3 1.5E-12 5.1E-17 126.7 7.8 136 279-456 10-152 (235)
3 3k2o_A Bifunctional arginine d 99.3 8.7E-11 3E-15 124.2 17.7 246 278-639 55-305 (336)
4 3al5_A HTYW5, JMJC domain-cont 99.1 1.2E-10 4.3E-15 122.5 7.0 224 278-628 37-278 (338)
5 3k3o_A PHF8, PHD finger protei 99.0 3.4E-09 1.2E-13 113.4 15.0 228 279-637 28-264 (371)
6 2yu1_A JMJC domain-containing 99.0 7.2E-09 2.5E-13 113.5 16.9 239 282-637 65-313 (451)
7 3kv4_A PHD finger protein 8; e 98.9 3.6E-09 1.2E-13 115.8 12.8 232 279-637 112-348 (447)
8 3kv5_D JMJC domain-containing 98.9 5.9E-09 2E-13 115.2 14.5 232 279-637 147-383 (488)
9 3d8c_A Hypoxia-inducible facto 98.9 4.8E-10 1.6E-14 118.7 5.5 40 586-625 257-297 (349)
10 3kv9_A JMJC domain-containing 98.9 1.2E-08 4.1E-13 110.1 15.2 227 279-637 56-292 (397)
11 3pua_A GRC5, PHD finger protei 98.8 2.7E-08 9.2E-13 107.2 14.2 231 279-637 55-291 (392)
12 3pur_A Lysine-specific demethy 98.2 5.9E-06 2E-10 91.7 13.1 51 587-637 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.6 6.8E-05 2.3E-09 79.3 6.4 86 525-629 233-318 (332)
14 4ask_A Lysine-specific demethy 97.5 0.00025 8.6E-09 78.4 9.6 84 527-629 269-352 (510)
15 3avr_A Lysine-specific demethy 97.4 0.00024 8.2E-09 79.3 8.1 88 525-631 292-379 (531)
16 3dxt_A JMJC domain-containing 96.3 0.0042 1.4E-07 66.2 6.5 93 527-630 210-302 (354)
17 3opt_A DNA damage-responsive t 95.6 0.017 5.8E-07 61.9 7.0 92 527-630 253-345 (373)
18 2ox0_A JMJC domain-containing 95.3 0.02 6.8E-07 61.7 6.5 94 526-630 227-320 (381)
19 4diq_A Lysine-specific demethy 94.2 0.044 1.5E-06 60.8 5.8 42 585-626 223-266 (489)
20 2opk_A Hypothetical protein; p 92.2 0.042 1.4E-06 48.3 1.3 24 592-615 75-98 (112)
21 3lag_A Uncharacterized protein 91.7 0.056 1.9E-06 46.7 1.6 24 592-615 61-84 (98)
22 1yhf_A Hypothetical protein SP 91.4 0.074 2.5E-06 45.6 2.0 59 562-627 56-114 (115)
23 2pfw_A Cupin 2, conserved barr 91.4 0.059 2E-06 46.3 1.3 58 562-627 50-107 (116)
24 3ht1_A REMF protein; cupin fol 91.2 0.093 3.2E-06 46.6 2.5 41 587-627 76-116 (145)
25 3fjs_A Uncharacterized protein 91.1 0.072 2.5E-06 46.7 1.6 42 585-627 69-110 (114)
26 2q30_A Uncharacterized protein 90.8 0.065 2.2E-06 45.2 1.1 39 586-626 69-108 (110)
27 1vrb_A Putative asparaginyl hy 90.7 0.1 3.4E-06 55.0 2.6 36 587-622 215-252 (342)
28 3h8u_A Uncharacterized conserv 90.4 0.1 3.5E-06 45.5 2.0 38 589-626 78-115 (125)
29 1v70_A Probable antibiotics sy 90.2 0.1 3.4E-06 43.1 1.6 27 589-615 66-92 (105)
30 2b8m_A Hypothetical protein MJ 90.2 0.14 4.7E-06 44.3 2.6 35 593-627 69-105 (117)
31 2fqp_A Hypothetical protein BP 90.0 0.14 4.8E-06 43.2 2.4 25 591-615 60-84 (97)
32 4e2g_A Cupin 2 conserved barre 89.7 0.2 6.8E-06 43.7 3.3 60 562-628 57-116 (126)
33 1juh_A Quercetin 2,3-dioxygena 89.5 0.12 3.9E-06 54.5 1.9 40 591-631 292-332 (350)
34 2ozj_A Cupin 2, conserved barr 89.5 0.11 3.6E-06 44.8 1.3 34 585-618 71-104 (114)
35 2xdv_A MYC-induced nuclear ant 89.2 0.5 1.7E-05 51.7 6.6 30 585-614 194-223 (442)
36 1o5u_A Novel thermotoga mariti 89.1 0.11 3.8E-06 45.3 1.1 30 589-618 67-96 (101)
37 2xlg_A SLL1785 protein, CUCA; 89.0 0.16 5.4E-06 51.2 2.3 50 591-640 103-163 (239)
38 3d82_A Cupin 2, conserved barr 88.9 0.16 5.6E-06 42.2 2.0 27 591-617 69-95 (102)
39 2gu9_A Tetracenomycin polyketi 88.5 0.19 6.7E-06 42.2 2.2 41 587-627 59-99 (113)
40 3kgz_A Cupin 2 conserved barre 88.4 0.21 7.3E-06 46.7 2.6 41 587-627 79-119 (156)
41 2ozi_A Hypothetical protein RP 88.0 0.15 5.1E-06 44.3 1.2 23 593-615 62-84 (98)
42 3ibm_A Cupin 2, conserved barr 88.0 0.2 6.9E-06 47.1 2.2 47 562-614 72-118 (167)
43 3h7j_A Bacilysin biosynthesis 87.0 0.18 6.1E-06 50.0 1.3 60 562-627 162-221 (243)
44 1y9q_A Transcriptional regulat 86.2 0.21 7.3E-06 47.1 1.3 43 585-628 139-181 (192)
45 2i45_A Hypothetical protein; n 85.8 0.31 1.1E-05 41.5 1.9 37 590-629 67-103 (107)
46 1lr5_A Auxin binding protein 1 85.2 0.3 1E-05 45.0 1.7 25 590-614 88-112 (163)
47 3cew_A Uncharacterized cupin p 84.6 0.31 1.1E-05 42.6 1.5 29 586-614 62-90 (125)
48 3l2h_A Putative sugar phosphat 84.5 0.31 1.1E-05 44.7 1.5 40 587-626 83-123 (162)
49 2oa2_A BH2720 protein; 1017534 84.1 0.43 1.5E-05 43.4 2.3 25 591-615 89-113 (148)
50 3jzv_A Uncharacterized protein 83.7 0.49 1.7E-05 44.7 2.5 30 586-615 87-116 (166)
51 4axo_A EUTQ, ethanolamine util 83.6 0.44 1.5E-05 44.9 2.1 58 564-628 81-138 (151)
52 3lwc_A Uncharacterized protein 83.6 0.5 1.7E-05 42.2 2.3 25 589-613 76-100 (119)
53 1vj2_A Novel manganese-contain 83.3 0.38 1.3E-05 42.5 1.5 47 563-615 65-111 (126)
54 4i4a_A Similar to unknown prot 83.1 1.1 3.9E-05 38.8 4.5 56 585-644 67-124 (128)
55 2o8q_A Hypothetical protein; c 82.6 0.62 2.1E-05 41.1 2.6 60 563-628 60-120 (134)
56 1x82_A Glucose-6-phosphate iso 81.7 0.59 2E-05 44.8 2.2 40 588-627 117-156 (190)
57 3bcw_A Uncharacterized protein 81.5 0.46 1.6E-05 42.9 1.3 29 592-620 89-117 (123)
58 3rns_A Cupin 2 conserved barre 81.5 0.55 1.9E-05 46.0 1.9 49 562-616 169-218 (227)
59 4h7l_A Uncharacterized protein 80.9 0.27 9.4E-06 46.8 -0.4 47 561-612 60-108 (157)
60 1qwr_A Mannose-6-phosphate iso 80.5 0.56 1.9E-05 49.0 1.7 17 594-610 162-178 (319)
61 2bnm_A Epoxidase; oxidoreducta 79.9 0.61 2.1E-05 43.9 1.7 45 563-613 137-185 (198)
62 1zx5_A Mannosephosphate isomer 79.9 0.61 2.1E-05 48.4 1.7 18 593-610 161-178 (300)
63 3i7d_A Sugar phosphate isomera 79.0 0.93 3.2E-05 42.3 2.5 41 586-626 79-121 (163)
64 1y3t_A Hypothetical protein YX 78.9 0.73 2.5E-05 46.8 1.9 50 585-635 252-301 (337)
65 1fi2_A Oxalate oxidase, germin 78.5 1.1 3.8E-05 43.1 3.0 39 590-628 119-157 (201)
66 1o4t_A Putative oxalate decarb 78.1 0.77 2.6E-05 41.0 1.6 31 585-615 91-121 (133)
67 2f4p_A Hypothetical protein TM 77.0 1.1 3.7E-05 41.0 2.3 25 592-616 89-113 (147)
68 3rns_A Cupin 2 conserved barre 76.1 0.9 3.1E-05 44.5 1.6 56 560-621 51-106 (227)
69 1rc6_A Hypothetical protein YL 75.8 0.83 2.8E-05 45.5 1.3 31 585-615 213-243 (261)
70 1dgw_A Canavalin; duplicated s 75.7 0.92 3.2E-05 43.0 1.5 27 589-615 82-108 (178)
71 2wfp_A Mannose-6-phosphate iso 75.3 0.97 3.3E-05 48.7 1.7 15 595-609 245-259 (394)
72 1pmi_A PMI, phosphomannose iso 73.3 1.2 3.9E-05 48.8 1.7 16 594-609 270-285 (440)
73 2vpv_A Protein MIF2, MIF2P; nu 73.2 1.7 5.8E-05 41.6 2.7 29 587-615 125-153 (166)
74 1sef_A Conserved hypothetical 73.1 1.2 4.2E-05 44.8 1.7 31 585-615 216-246 (274)
75 2pyt_A Ethanolamine utilizatio 72.7 1.5 5E-05 40.0 2.0 35 587-621 90-124 (133)
76 3h7j_A Bacilysin biosynthesis 72.3 1.2 4.2E-05 43.9 1.5 49 561-615 49-98 (243)
77 1y3t_A Hypothetical protein YX 72.2 1.3 4.6E-05 44.9 1.8 48 585-633 80-127 (337)
78 4e2q_A Ureidoglycine aminohydr 71.9 1.3 4.3E-05 45.5 1.5 29 585-613 220-248 (266)
79 1juh_A Quercetin 2,3-dioxygena 71.2 1.3 4.3E-05 46.6 1.4 68 563-636 67-139 (350)
80 2vqa_A SLL1358 protein, MNCA; 70.7 1.2 4E-05 46.2 1.0 38 591-628 279-316 (361)
81 2d40_A Z3393, putative gentisa 68.7 2 7E-05 45.2 2.3 40 587-626 136-175 (354)
82 2vqa_A SLL1358 protein, MNCA; 68.2 0.95 3.2E-05 46.9 -0.4 25 590-614 96-120 (361)
83 1sq4_A GLXB, glyoxylate-induce 68.2 1.7 5.9E-05 44.1 1.6 31 585-615 103-133 (278)
84 1j58_A YVRK protein; cupin, de 68.0 1.6 5.4E-05 45.8 1.3 27 589-615 300-326 (385)
85 3nw4_A Gentisate 1,2-dioxygena 67.4 2.5 8.6E-05 45.2 2.7 28 587-614 139-166 (368)
86 3bu7_A Gentisate 1,2-dioxygena 66.8 2.5 8.7E-05 45.5 2.6 29 586-614 328-356 (394)
87 1sfn_A Conserved hypothetical 65.6 2.2 7.4E-05 42.4 1.7 32 584-615 198-229 (246)
88 1zrr_A E-2/E-2' protein; nicke 62.5 4.5 0.00015 39.0 3.2 36 591-626 123-158 (179)
89 1sfn_A Conserved hypothetical 62.5 2.6 8.8E-05 41.8 1.5 31 586-616 82-112 (246)
90 4b29_A Dimethylsulfoniopropion 60.8 2.8 9.5E-05 41.9 1.4 46 562-613 148-194 (217)
91 2d5f_A Glycinin A3B4 subunit; 59.7 3.1 0.00011 46.1 1.7 31 595-625 118-148 (493)
92 3es1_A Cupin 2, conserved barr 58.2 3.7 0.00013 39.4 1.7 35 591-626 119-153 (172)
93 4e2q_A Ureidoglycine aminohydr 57.1 3.4 0.00012 42.3 1.4 23 591-613 110-132 (266)
94 1vr3_A Acireductone dioxygenas 57.0 5.3 0.00018 39.0 2.7 37 591-627 128-164 (191)
95 2e9q_A 11S globulin subunit be 56.9 3.3 0.00011 45.5 1.3 33 595-627 132-164 (459)
96 1sef_A Conserved hypothetical 56.7 3.9 0.00013 41.1 1.7 31 585-615 97-127 (274)
97 1sq4_A GLXB, glyoxylate-induce 56.0 3.5 0.00012 41.8 1.3 32 584-615 224-255 (278)
98 1rc6_A Hypothetical protein YL 55.9 5.2 0.00018 39.7 2.5 30 586-615 95-124 (261)
99 2d40_A Z3393, putative gentisa 54.1 6 0.00021 41.6 2.7 27 587-613 303-329 (354)
100 3bu7_A Gentisate 1,2-dioxygena 52.6 6.3 0.00022 42.5 2.6 27 586-612 158-184 (394)
101 3c3v_A Arachin ARAH3 isoform; 52.1 4.6 0.00016 45.0 1.4 34 595-628 131-164 (510)
102 2arc_A ARAC, arabinose operon 51.9 7.5 0.00026 34.4 2.6 30 585-614 51-80 (164)
103 1vq8_T 50S ribosomal protein L 50.4 4.6 0.00016 36.9 0.9 42 563-606 14-55 (120)
104 1fxz_A Glycinin G1; proglycini 49.9 5.3 0.00018 44.0 1.5 29 592-620 115-143 (476)
105 3j21_U 50S ribosomal protein L 48.4 5.3 0.00018 36.6 1.0 40 564-605 18-57 (121)
106 2ea7_A 7S globulin-1; beta bar 47.8 4.8 0.00016 43.8 0.7 26 589-614 102-127 (434)
107 3cjx_A Protein of unknown func 47.0 7.2 0.00025 37.0 1.7 34 595-628 85-127 (165)
108 2y0o_A Probable D-lyxose ketol 46.8 7.4 0.00025 37.6 1.8 38 591-630 120-157 (175)
109 2cav_A Protein (canavalin); vi 45.7 6.3 0.00022 43.0 1.3 25 590-614 128-152 (445)
110 1uij_A Beta subunit of beta co 42.1 7.4 0.00025 42.0 1.1 46 563-613 65-114 (416)
111 1fxz_A Glycinin G1; proglycini 42.0 9 0.00031 42.2 1.8 58 561-618 353-411 (476)
112 2fc7_A ZZZ3 protein; structure 40.8 10 0.00034 32.2 1.5 31 94-124 19-59 (82)
113 3c3v_A Arachin ARAH3 isoform; 36.7 12 0.00042 41.6 1.8 94 524-619 352-446 (510)
114 1j58_A YVRK protein; cupin, de 33.6 17 0.00059 37.8 2.2 25 591-615 123-147 (385)
115 2d5f_A Glycinin A3B4 subunit; 33.5 8.8 0.0003 42.5 -0.0 119 524-646 347-466 (493)
116 2o1q_A Putative acetyl/propion 32.8 14 0.00049 33.7 1.3 25 595-619 89-114 (145)
117 1tot_A CREB-binding protein; z 31.0 13 0.00043 29.0 0.5 28 96-123 6-38 (52)
118 3nw4_A Gentisate 1,2-dioxygena 28.7 28 0.00096 37.2 2.9 30 588-617 315-344 (368)
119 3kgl_A Cruciferin; 11S SEED gl 28.4 18 0.00062 39.8 1.4 22 595-616 150-171 (466)
120 3qac_A 11S globulin SEED stora 28.1 21 0.00073 39.3 1.9 34 595-628 135-168 (465)
121 2e5r_A Dystrobrevin alpha; ZZ 27.7 16 0.00055 29.4 0.6 28 97-124 12-46 (63)
122 2dip_A Zinc finger SWIM domain 26.7 23 0.00079 31.0 1.5 30 93-122 28-64 (98)
123 2zkr_t 60S ribosomal protein L 25.5 9.4 0.00032 35.9 -1.3 42 563-606 20-61 (145)
124 3ksc_A LEGA class, prolegumin; 24.3 23 0.00078 39.4 1.2 21 595-615 115-135 (496)
125 3u5e_Y L33, YL33, 60S ribosoma 23.7 11 0.00038 34.7 -1.2 41 564-606 22-62 (127)
126 3fz3_A Prunin; TREE NUT allerg 22.0 31 0.001 38.7 1.7 22 595-616 177-198 (531)
127 1zx5_A Mannosephosphate isomer 21.8 28 0.00095 35.9 1.2 20 593-612 268-288 (300)
128 1uij_A Beta subunit of beta co 21.6 34 0.0012 36.8 1.9 21 593-613 310-330 (416)
129 3es4_A Uncharacterized protein 20.3 33 0.0011 30.8 1.2 18 592-609 82-99 (116)
130 2phl_A Phaseolin; plant SEED s 20.3 28 0.00096 37.4 0.9 24 591-614 95-124 (397)
131 3eqe_A Putative cystein deoxyg 20.2 46 0.0016 31.6 2.3 36 592-627 119-154 (171)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-128 Score=1024.34 Aligned_cols=333 Identities=32% Similarity=0.565 Sum_probs=276.0
Q ss_pred cccHHHHHHHhhcCCCEEEecccccCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccCc
Q 039227 277 HESLEHFKSHWIKGEPVIITNVLDYSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEGR 356 (654)
Q Consensus 277 ~~~~~~FQ~hW~~GePViV~~v~~~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~gR 356 (654)
.+|++|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||+||++++
T Consensus 21 ~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~---------~~~lidC~~~~~~~i~v~~Ff~Gf~~~~ 91 (392)
T 2ypd_A 21 SSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH---------QADLLNCKDSIISNANVKEFWDGFEEVS 91 (392)
T ss_dssp TTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS---------CCCCEETTTCCBCSCCHHHHHHTSSBGG
T ss_pred cccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc---------eeeeeeCCCCccccCcHHHHhhhccccc
Confidence 4799999999999999999999999999999999999999751 3678999999999999999999999875
Q ss_pred C---CCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccc
Q 039227 357 T---HSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEE 433 (654)
Q Consensus 357 ~---~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~e 433 (654)
. .+++||+|||||||||+++|+++||+||+|||++||||||||| +|+|||||+||+++++||||||||||||++++
T Consensus 92 ~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p-~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~~ 170 (392)
T 2ypd_A 92 KRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNP-EGKFNLASHLPGFFVRPDLGPRLCSAYGVVAA 170 (392)
T ss_dssp GC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHST-TCTTCCTTTSCGGGCC---CCEEEEECCSTTT
T ss_pred cCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCC-CccchHHHhCCCCCCCCCCCcchhhhcCcchh
Confidence 3 4699999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred cCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCC
Q 039227 434 LGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSM 513 (654)
Q Consensus 434 lG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 513 (654)
+|+|+|||||||||||||||||||++++. .+...+. ++.+++.+++.++.+.
T Consensus 171 ~~~~~gvT~LH~DmsDaVNiL~h~~~~~~-~~~~~~~-~~l~~~~~~~~d~~~~-------------------------- 222 (392)
T 2ypd_A 171 KDHDIGTTNLHIEVSDVVNILVYVGIAKG-NGILSKA-GILKKFEEEDLDDILR-------------------------- 222 (392)
T ss_dssp TCTTCCSEEEEECSSEEEEEEEEEECCBC-TTCCCHH-HHHHHHHTSCCCHHHH--------------------------
T ss_pred cccCCCcceeeeehhhhhhhhheecccCc-cccchhh-hhhhhhhhccccHHHh--------------------------
Confidence 99999999999999999999999987652 2222222 3334455544333321
Q ss_pred cccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEE
Q 039227 514 QSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFV 593 (654)
Q Consensus 514 ~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~ 593 (654)
.++.+.++.+||+||||||||++|||+||++|++||. .++.+++||||||+||||++||++|+|||||+||||+
T Consensus 223 --~r~~~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~ 296 (392)
T 2ypd_A 223 --KRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLI 296 (392)
T ss_dssp --HHHTCTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC----------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEE
T ss_pred --hhccCCCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEE
Confidence 1122345789999999999999999999999999984 5577899999999999999999999999999999999
Q ss_pred eecCceEEecCCCccccccccccchhhccccCccChHHHHHHHHHHccCCchhccccccCC
Q 039227 594 QQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTDEFRTLPRNHRAKKDKLQ 654 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~EfR~Lp~~h~~keDkLe 654 (654)
|++|||||||||||||||||+||||||+||||||||++|++||+|||+|| +|++||||||
T Consensus 297 Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~-~~~~~edkLq 356 (392)
T 2ypd_A 297 QFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLK-EEINYDDKLQ 356 (392)
T ss_dssp EETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC---------------
T ss_pred EcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhhcc-hhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999997 5999999997
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.33 E-value=1.5e-12 Score=126.68 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=76.5
Q ss_pred cHHHH-HHHhhcCCCEEEecccccCCC-CCCChhHhHHHhhhccccCCCccceeEEeeCC-----CCceeecchhHHHhh
Q 039227 279 SLEHF-KSHWIKGEPVIITNVLDYSSG-LSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCL-----DLCEVKINTYQFFKA 351 (654)
Q Consensus 279 ~~~~F-Q~hW~~GePViV~~v~~~~~~-lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl-----~~~ev~i~~~~Ff~G 351 (654)
..+.| +++|.+++|||++|+.+.-.. -.|+++++.+.+++. .|.+-.+. ++....+++++|.+.
T Consensus 10 S~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~~---------~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 4gjz_A 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCR---------TVPVEVGSRYTDEEWSQTLMTVNEFISK 80 (235)
T ss_dssp CHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTTS---------EEEEEEC-------CEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhcCCCcEEEeCCCcCCcccccCCHHHHHHHcCCC---------eEEEEecCcccCCccceeeccHHHHHHH
Confidence 45677 568899999999998764322 259999988777642 23332222 233455788999887
Q ss_pred hccCcCCCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccc
Q 039227 352 YMEGRTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVA 431 (654)
Q Consensus 352 f~~gR~~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~ 431 (654)
+...... ..+-+.++ .+.+ .+.++..-+.+|.|.....+.. .+..+-+|
T Consensus 81 ~~~~~~~-----~~~y~~~~----~~~~----~~~~l~~d~~~p~~~~~~~~~~------------~~~~~~~w------ 129 (235)
T 4gjz_A 81 YIVNEPR-----DVGYLAQH----QLFD----QIPELKQDISIPDYCSLGDGEE------------EEITINAW------ 129 (235)
T ss_dssp HTSSCCS-----SCEEEEEE----CHHH----HCHHHHTTCCCCGGGGGSSSCG------------GGCEEEEE------
T ss_pred HhhcCCc-----ccceeehh----hhhh----hhHHHHHhhcCCcccccccccc------------CccceEEE------
Confidence 7653221 12233333 2333 3345555556666653211111 11112222
Q ss_pred cccCCCCCcccccccccccceeeee
Q 039227 432 EELGRGDSVTKLHCDMSDAVNVLMH 456 (654)
Q Consensus 432 ~elG~gdSvTkLH~DmSDAVNiL~h 456 (654)
.|.+.++|.||.|..|..+++++
T Consensus 130 --iG~~gs~t~~H~D~~~n~~~qv~ 152 (235)
T 4gjz_A 130 --FGPQGTISPLHQDPQQNFLVQVM 152 (235)
T ss_dssp --EECTTCEEEEECCSSEEEEEEEE
T ss_pred --EeCCCCCceeeeccccceEEEEe
Confidence 34556899999999886655544
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.27 E-value=8.7e-11 Score=124.24 Aligned_cols=246 Identities=19% Similarity=0.243 Sum_probs=144.6
Q ss_pred ccHHHHHHHhh-cCCCEEEecccccCCCC-CCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 278 ESLEHFKSHWI-KGEPVIITNVLDYSSGL-SWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 278 ~~~~~FQ~hW~-~GePViV~~v~~~~~~l-sW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
-....|.+.+. .+.|||++|+.+.-... .|++.++-+.+++. .|.+-.-.++..+.+++++|.+-+...
T Consensus 55 lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~G~~---------~V~v~~~~~~~~~~m~~~~fl~~~~~~ 125 (336)
T 3k2o_A 55 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQ---------KFKCGEDNDGYSVKMKMKYYIEYMEST 125 (336)
T ss_dssp CCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHSTTC---------EEEEEECTTSCEEEEEHHHHHHHHHHC
T ss_pred CCHHHHHHHhhccCCCEEEeCCcCCChhHhhhhHHHHHHHhCCc---------eEEEEecCCCceeeecHHHHHHHHHhc
Confidence 46889988776 69999999987642221 58999888777642 233222223445789999999855433
Q ss_pred cCCCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcccccccC
Q 039227 356 RTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAEELG 435 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~elG 435 (654)
. + ..|.. |.||. |.+. ..++++..-..+|+|-- ...+|++ +. ..+|| -+++=.|
T Consensus 126 ~-~--~~~lY--L~d~~----~~e~--~~~p~L~~dy~~P~~f~--~d~~~~~---~~-~~~p~---~~~~~~G------ 179 (336)
T 3k2o_A 126 R-D--DSPLY--IFDSS----YGEH--PKRRKLLEDYKVPKFFT--DDLFQYA---GE-KRRPP---YRWFVMG------ 179 (336)
T ss_dssp C-C--SSCCC--EEESC----GGGS--TTGGGGGGGCCCCGGGC--CCGGGGG---CT-TTSCC---CEEEEEE------
T ss_pred C-C--CCCce--Eeccc----cccc--ccchhHHHhcCCCcccc--cchhhhc---cc-ccCCC---ceEEEEC------
Confidence 2 1 12333 44542 3221 11334444456778773 3456543 22 12332 2332223
Q ss_pred CCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCCcc
Q 039227 436 RGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSMQS 515 (654)
Q Consensus 436 ~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 515 (654)
.+.|+|.||.|....-|+++.+.
T Consensus 180 ~~gs~t~~H~D~~~~~~~~~~v~--------------------------------------------------------- 202 (336)
T 3k2o_A 180 PPRSGTGIHIDPLGTSAWNALVQ--------------------------------------------------------- 202 (336)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEE---------------------------------------------------------
T ss_pred CCCccCCcccCCCccceeeEEEe---------------------------------------------------------
Confidence 34578999999987644443321
Q ss_pred cccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHH-HHh--CccceEE
Q 039227 516 NTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLK-EEF--GVEPWSF 592 (654)
Q Consensus 516 ~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLk-eEy--GVepwtf 592 (654)
|.-.|-+|.+.+.+.|- ++........ .. ... .|+++..- +++ ++| +..++.+
T Consensus 203 ---------G~K~~~L~pP~~~~~ly----~~~~~~~~~~--~~-~~~------~w~~~~~P--~~~~~~~p~~~~~~~~ 258 (336)
T 3k2o_A 203 ---------GHKRWCLFPTSTPRELI----KVTRDEGGNQ--QD-EAI------TWFNVIYP--RTQLPTWPPEFKPLEI 258 (336)
T ss_dssp ---------SCEEEEEECTTSCHHHH----CCCHHHHGGG--TT-CHH------HHHHHTGG--GGGSTTSCGGGCCEEE
T ss_pred ---------eeEEEEEeCCCcchhcc----cCcccccCCC--cc-chh------hhhhhhCc--chhhhcccccCceEEE
Confidence 12246777776654431 1111110000 00 000 01110000 000 011 4688999
Q ss_pred EeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHHHH
Q 039227 593 VQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTDEF 639 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~Ef 639 (654)
+|.+||++|||+|-.|||+|+..||.|+..|+++.|+...+++|-+=
T Consensus 259 ~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~ 305 (336)
T 3k2o_A 259 LQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRG 305 (336)
T ss_dssp EECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHH
T ss_pred EECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999653
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=99.06 E-value=1.2e-10 Score=122.52 Aligned_cols=224 Identities=14% Similarity=0.168 Sum_probs=128.4
Q ss_pred ccHHHHHH-HhhcCCCEEEecccccCC-CCCCChhHhHHHhhhccccCCCccceeEEeeC---------CCCceeecchh
Q 039227 278 ESLEHFKS-HWIKGEPVIITNVLDYSS-GLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDC---------LDLCEVKINTY 346 (654)
Q Consensus 278 ~~~~~FQ~-hW~~GePViV~~v~~~~~-~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idC---------l~~~ev~i~~~ 346 (654)
-+...|.+ +|.+++|||++| ...-. ...|+++++.+.+++. .|.+-.+ .+|....++++
T Consensus 37 lS~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws~dyL~~~~g~~---------~V~v~~~~~~~~~~~~~~~~~~~~~f~ 106 (338)
T 3al5_A 37 VSREQFMQHLYPQRKPLVLEG-IDLGPCTSKWTVDYLSQVGGKK---------EVKIHVAAVAQMDFISKNFVYRTLPFD 106 (338)
T ss_dssp CCHHHHHHHTGGGCCCEEEES-CCCCTHHHHCCHHHHHHHHCSC---------EEEEEC----CCCC-CCCCCEEEEEHH
T ss_pred CCHHHHHHHhhcCCCeEEEeC-CCCCcccccCCHHHHHHhhCCc---------eEEEEEcCCCCcccccccceeEEeEHH
Confidence 35677875 677999999999 43321 1268899988777652 2222222 23555678999
Q ss_pred HHHhhhccCcCCC--CCCceeeecCCCCC-----chhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCC
Q 039227 347 QFFKAYMEGRTHS--NSWPVILKLKDWPP-----SCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPD 419 (654)
Q Consensus 347 ~Ff~Gf~~gR~~~--~~~p~~LKLKDWPp-----s~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPD 419 (654)
+|.+-+...+... ..-...+-|++|+. ...+.+.+|. +...+++|.|-.+ +. +..
T Consensus 107 efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p~----L~~d~~~P~~~~~-d~-~~~------------ 168 (338)
T 3al5_A 107 QLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPL----LKGDIKFPEFFKE-EQ-FFS------------ 168 (338)
T ss_dssp HHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCHH----HHTTCCCCCCSCG-GG-EEE------------
T ss_pred HHHHHHHhccccccccCCCcccchhhcccccccchhhHhHHCHH----HHHhcCCCccccc-cc-ccc------------
Confidence 9998765432110 00123445666653 2345555554 4444557776532 11 110
Q ss_pred CCcchhhhcccccccCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccC
Q 039227 420 LGPKAYIAYGVAEELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMN 499 (654)
Q Consensus 420 LGPK~YiAYG~~~elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~ 499 (654)
.-+| .|.+.+.|.+|.|..|..+++++
T Consensus 169 --s~l~--------~g~~g~~~~~H~D~~~n~~~qv~------------------------------------------- 195 (338)
T 3al5_A 169 --SVFR--------ISSPGLQLWTHYDVMDNLLIQVT------------------------------------------- 195 (338)
T ss_dssp --EEEE--------EECTTCEEEEECCSSEEEEEECS-------------------------------------------
T ss_pred --ceeE--------ECCCCCCccceECCcccEEEEEE-------------------------------------------
Confidence 0112 12334679999999985444432
Q ss_pred CCCCccccccCCCCcccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHH
Q 039227 500 HSKSEEKLRPISSMQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKK 579 (654)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~ 579 (654)
|--.|-+|.+.+.+.| |.. . ...+.+ .+.+| |-..| .
T Consensus 196 -------------------------G~K~w~L~pP~~~~~l--y~~------~-~~~~~~-d~~~~--d~~~~--p---- 232 (338)
T 3al5_A 196 -------------------------GKKRVVLFSPRDAQYL--YLK------G-TKSEVL-NIDNP--DLAKY--P---- 232 (338)
T ss_dssp -------------------------SCEEEEEECGGGGGGG--TEE------T-TEESCC-CSSSC--CTTTC--T----
T ss_pred -------------------------EEEEEEEECccccccc--ccC------C-CCcccc-cCCCc--chhhC--c----
Confidence 1224666666665544 110 0 000001 11122 11111 0
Q ss_pred HHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 580 KLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 580 rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
+++ ++.++.+++.+||++|||+|..|||+|+-.||.|..-|.++..
T Consensus 233 ~~~---~~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 233 LFS---KARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp TGG---GCCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred ccc---cCCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 011 3579999999999999999999999999999999999988764
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=99.00 E-value=3.4e-09 Score=113.41 Aligned_cols=228 Identities=17% Similarity=0.289 Sum_probs=140.0
Q ss_pred cHHHHHHHhhcCCCEEEecccc---cCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 279 SLEHFKSHWIKGEPVIITNVLD---YSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 279 ~~~~FQ~hW~~GePViV~~v~~---~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
....|+++ +=..||||++... ......|+-..+-.-++. ...|.++||.+...+.+++++|.+=|...
T Consensus 28 t~~y~~~~-~~~~Pvli~~~~glg~~~P~~~~tv~~v~~~vG~--------d~~V~ViDv~~Q~~~~M~l~~y~dY~~~~ 98 (371)
T 3k3o_A 28 TVEFLEEN-SFSVPILVLKKDGLGMTLPSPSFTVRDVEHYVGS--------DKEIDVIDVTRQADCKMKLGDFVKYYYSG 98 (371)
T ss_dssp CHHHHHHH-TTCSCEEESSCTTSCCBCCCTTCCHHHHHHHHCC---------CEEEEEETTTTEEEEEEHHHHHHHHTCT
T ss_pred cHHHHHhc-CCCCCEEEecCcccCCcCCCCCCCHHHHHHHcCC--------CceEeeeecCcCCCccccHHHHHHHHhcc
Confidence 35667776 3458999998542 233336888888666652 35689999999988899999999866543
Q ss_pred cCCCCCCceeeecCCCCCchh-hHh--hccchhhHH--hhc-CCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhcc
Q 039227 356 RTHSNSWPVILKLKDWPPSCL-FEE--RLPCHGAEF--MNI-LPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYG 429 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~-F~e--~lP~h~~ef--i~~-LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG 429 (654)
. + ..+|-+.||--++. +.+ ..|..+.|+ +.. .| ..+. ..+||. ..|.-.|
T Consensus 99 ~-r----e~~lnv~d~efs~~~L~~~~~~P~~~~d~d~~~~~wp-------~~~~----------~~rP~~--~r~l~mG 154 (371)
T 3k3o_A 99 K-R----EKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWP-------EECV----------FERPNV--QKYCLMS 154 (371)
T ss_dssp T-C----CSCEEEEEEECTTSGGGGTCBCCHHHHHHCHHHHHSC-------SSCS----------SCCCCC--SCEEEEE
T ss_pred C-C----CCceeeechhccchhhhccccCCchhhhhhhhhhcCC-------hhhh----------ccCCCc--eeEEEEc
Confidence 1 1 12444545433321 111 234444432 211 12 1110 112321 1233333
Q ss_pred cccccCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCcccccc
Q 039227 430 VAEELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRP 509 (654)
Q Consensus 430 ~~~elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~ 509 (654)
...|.|.+|.|.... ++..++-
T Consensus 155 ------p~gS~T~~HiD~~gt-s~w~~vv--------------------------------------------------- 176 (371)
T 3k3o_A 155 ------VRDSYTDFHIDFGGT-SVWYHVL--------------------------------------------------- 176 (371)
T ss_dssp ------CTTEEEEEECCGGGC-EEEEEEE---------------------------------------------------
T ss_pred ------CCCCCCCeEECCCCC-ceeEEEe---------------------------------------------------
Confidence 455799999998765 2222211
Q ss_pred CCCCcccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccc
Q 039227 510 ISSMQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEP 589 (654)
Q Consensus 510 ~~~~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVep 589 (654)
.|.-.|=+|++.+.+ +.-| +.+.. + +-.+..||-+ ...++
T Consensus 177 --------------~GrK~w~L~PPt~~n-l~~y--~~~~~------s-------~~~~e~~~~~----------~~~~~ 216 (371)
T 3k3o_A 177 --------------KGEKIFYLIRPTNAN-LTLF--ECWSS------S-------SNQNEMFFGD----------QVDKC 216 (371)
T ss_dssp --------------EEEEEEEEECCCHHH-HHHH--HHHHT------S-------TTGGGSCGGG----------TSSCC
T ss_pred --------------eeEEEEEEECCCccc-cccc--ccccc------C-------Cccchhhccc----------ccCce
Confidence 134468888886653 3222 11110 0 0012223332 23689
Q ss_pred eEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
+.++|.+||++|||+|..|||.|+..||-|+..|++..|+...++..+
T Consensus 217 ~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~ 264 (371)
T 3k3o_A 217 YKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 264 (371)
T ss_dssp EEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred EEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876
No 6
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.98 E-value=7.2e-09 Score=113.50 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=137.6
Q ss_pred HHHHHhhcCCCEEEecccccCC----CCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccCcC
Q 039227 282 HFKSHWIKGEPVIITNVLDYSS----GLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEGRT 357 (654)
Q Consensus 282 ~FQ~hW~~GePViV~~v~~~~~----~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~gR~ 357 (654)
.|.+.=..+.|||++|+ +.-. ...|+..++-..+++ ...|.++||.+..-+++++++|.+=+.....
T Consensus 65 EF~~~~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~~~G~--------d~~V~V~D~~~q~~~~M~l~eyidy~~~~~d 135 (451)
T 2yu1_A 65 EYIQRGGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKMCVGS--------RRMVDVMDVNTQKGIEMTMAQWTRYYETPEE 135 (451)
T ss_dssp HHHHHHCSCSCEEESSC-TTTTCBCCCTTCCHHHHHHHTCT--------TCCCCCEETTSSCCTTCCHHHHHHHHTSCTT
T ss_pred HHHHhcCCCCcEEEccC-cCCCCcCCcCCCCHHHHHHHcCC--------CceEeeEEcCCCcceeeeHHHHHHHHhhccc
Confidence 44333567999999999 5321 348999998777763 1357788999887788999999986654332
Q ss_pred CCCCCceeeecCCCCCchhhHh---hccchhhHH--hhcCCCcCccCCCC-CcccccccCCCCCCCCCCCcchhhhcccc
Q 039227 358 HSNSWPVILKLKDWPPSCLFEE---RLPCHGAEF--MNILPYKDYTHPYS-GILNIATKLPPDFLKPDLGPKAYIAYGVA 431 (654)
Q Consensus 358 ~~~~~p~~LKLKDWPps~~F~e---~lP~h~~ef--i~~LP~~eYt~pr~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~ 431 (654)
.. .+ ++-+.+|.=+..|-+ ..|....++ +.. .+|++-..+. -..|.+. ...+||.. .|.-+|
T Consensus 136 ~r--~~-LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~~-~~p~~l~~~~~d~f~~lg----e~~rP~~~--r~~~mG-- 203 (451)
T 2yu1_A 136 ER--EK-LYNVISLEFSHTRLENMVQRPSTVDFIDWVDN-MWPRHLKESQTESTNAIL----EMQYPKVQ--KYCLMS-- 203 (451)
T ss_dssp TC--CS-CEEEEEECCTTSTTGGGCBCCHHHHHHCHHHH-HSCGGGCC---------------CCSCCCC--CEEEEE--
T ss_pred cc--cc-hhhhcccccccccccccccCchhhhhhhcccc-cCchhhhhhhhhhhhhcc----cccCCchh--eEEEEc--
Confidence 21 12 222222211112211 123333333 211 1333321100 0112211 01223321 233333
Q ss_pred cccCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCC
Q 039227 432 EELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPIS 511 (654)
Q Consensus 432 ~elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~ 511 (654)
...|.|.+|.|....-|....+
T Consensus 204 ----p~gS~T~~H~D~~~ts~w~avi------------------------------------------------------ 225 (451)
T 2yu1_A 204 ----VRGCYTDFHVDFGGTSVWYHIH------------------------------------------------------ 225 (451)
T ss_dssp ----CTTCEEEEECCGGGCEEEEEEE------------------------------------------------------
T ss_pred ----cCCCCCCeEECCCCcchhhhee------------------------------------------------------
Confidence 4557999999997644333221
Q ss_pred CCcccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceE
Q 039227 512 SMQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWS 591 (654)
Q Consensus 512 ~~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwt 591 (654)
.|.-.|=+|++.+.+-+ -| ..+. . ++ . .+..|| .++..+++.
T Consensus 226 ------------~GrK~w~L~PP~~~~~~-~y--~~~~---~---s~-~------q~~~~~----------p~~~~~~~~ 267 (451)
T 2yu1_A 226 ------------QGGKVFWLIPPTAHNLE-LY--ENWL---L---SG-S------QGDIFL----------GDRVSDCQR 267 (451)
T ss_dssp ------------ESCEEEEEECCCHHHHH-HH--HHHH---H---TT-C------CSSSCH----------HHHSSCCEE
T ss_pred ------------cceEEEEEeCCCccccc-cc--cccc---c---cc-c------chhhhh----------ccccccceE
Confidence 13446888888775422 11 1111 0 00 0 111232 233457899
Q ss_pred EEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
++|.+||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 268 v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 268 IELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp EEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred EEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.94 E-value=3.6e-09 Score=115.81 Aligned_cols=232 Identities=16% Similarity=0.277 Sum_probs=138.8
Q ss_pred cHHHHHHHhhcCCCEEEecccc---cCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 279 SLEHFKSHWIKGEPVIITNVLD---YSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 279 ~~~~FQ~hW~~GePViV~~v~~---~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
..+.|+++- -+.||||++... ......|+...+-+.++. ...|.+||+.+...+.+++++|.+=|...
T Consensus 112 ~~~~~~~~~-~~~Pvli~~~~glgm~~P~~~~tv~~v~~~~G~--------d~~V~ViDv~~Q~~~~M~l~~y~dy~~~~ 182 (447)
T 3kv4_A 112 TVEFLEENS-FSVPILVLKKDGLGMTLPSPSFTVRDVEHYVGS--------DKEIDVIDVTRQADCKMKLGDFVKYYYSG 182 (447)
T ss_dssp CHHHHHHTT-SCSCEEESSCTTSCCBCCCTTCCHHHHHHHHCT--------TCEEEEEETTTTEEEEEEHHHHHHHHHSS
T ss_pred hHHHHHhcC-CCCCEEEecCcccCCcCCCccCCHHHHHHHcCC--------CceEcceecCcCccccccHHHHHHHHhcc
Confidence 345556553 389999998642 233336787887776653 34689999999988999999999866653
Q ss_pred cCCCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCC--CCCCCCCcchhhhcccccc
Q 039227 356 RTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPD--FLKPDLGPKAYIAYGVAEE 433 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~--~~kPDLGPK~YiAYG~~~e 433 (654)
. + ..+|-|.||--+.. .+....-+|+|.. ..=.+|. ..|.. ..+||. ..|.-
T Consensus 183 ~-r----~~~lnv~d~efs~~----------~L~~~~~~P~~~~-~~D~~~~--lw~~~~~~~rP~v--~r~~~------ 236 (447)
T 3kv4_A 183 K-R----EKVLNVISLEFSDT----------RLSNLVETPKIVR-KLSWVEN--LWPEECVFERPNV--QKYCL------ 236 (447)
T ss_dssp C-C----SSCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCSCTTSCCCCC--SCEEE------
T ss_pred C-C----CCceeecccccccc----------hhhhccCCCceec-ccchhhh--cccchhhccCCCc--eeEEE------
Confidence 2 1 12445545433321 1111122222221 0001110 01111 123321 12222
Q ss_pred cCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCC
Q 039227 434 LGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSM 513 (654)
Q Consensus 434 lG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 513 (654)
.|...|.|.+|.|.... ++..|+-
T Consensus 237 mG~~gS~T~~HiD~~~t-s~w~~vi------------------------------------------------------- 260 (447)
T 3kv4_A 237 MSVRDSYTDFHIDFGGT-SVWYHVL------------------------------------------------------- 260 (447)
T ss_dssp EECTTEEEEEECCGGGC-EEEEEEE-------------------------------------------------------
T ss_pred EeCCCCCCCeeECCCCC-ceeEEEe-------------------------------------------------------
Confidence 23455899999998665 3333321
Q ss_pred cccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEE
Q 039227 514 QSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFV 593 (654)
Q Consensus 514 ~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~ 593 (654)
.|--.|=+|++.+.. |..|= ++. ..+..+..||-+ ...+++.++
T Consensus 261 ----------~GrK~w~L~PPt~~n-l~~~~-----~~~----------~s~~~~~~~~~~----------~~~~~~~v~ 304 (447)
T 3kv4_A 261 ----------KGEKIFYLIRPTNAN-LTLFE-----CWS----------SSSNQNEMFFGD----------QVDKCYKCS 304 (447)
T ss_dssp ----------ESEEEEEEECCCHHH-HHHHH-----HHH----------TCSSGGGSCGGG----------GSSCCEEEE
T ss_pred ----------eeEEEEEEeCCCccc-ccchh-----hcc----------cCcchhhhhccc----------cccceEEEE
Confidence 134468888887654 32221 111 001112223322 135899999
Q ss_pred eecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 594 QQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
|.+||++|||+|..|||.||..||-|+..|++..|+..-++..+
T Consensus 305 l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 348 (447)
T 3kv4_A 305 VKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 348 (447)
T ss_dssp EETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHH
T ss_pred ECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.94 E-value=5.9e-09 Score=115.25 Aligned_cols=232 Identities=19% Similarity=0.317 Sum_probs=140.8
Q ss_pred cHHHHHHHhhcCCCEEEecccc---cCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 279 SLEHFKSHWIKGEPVIITNVLD---YSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 279 ~~~~FQ~hW~~GePViV~~v~~---~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
....|++++ =..||||.+.-. ......|+-.++-+.++. ...|.++||.....+++++++|.+=|...
T Consensus 147 ~~~~~~~~~-~~~Pvli~~~~~lg~~~P~~~~t~~~v~~~~G~--------d~~V~V~Dv~~Q~~~~m~l~~yi~y~~~~ 217 (488)
T 3kv5_D 147 TQRYLEKHG-FDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGG--------DKVIDVIDVARQADSKMTLHNYVKYFMNP 217 (488)
T ss_dssp CHHHHHHHC-SCSCEEECSCTTTCCBCCCTTCCHHHHHHHHCT--------TCEEEEEETTTTEEEEEEHHHHHHHHHSS
T ss_pred hHHHHHhcC-CCCCEEEecCCCcCCcCCCCCCcHHHHHHHhCC--------CceeeeeecCccccccccHHHHHHHHhcc
Confidence 466788886 478999999642 122235888888777653 34689999999988899999999977653
Q ss_pred cCCCCCCceeeecCCCCCchhhHhhccchhhHHhhcCCCcCccCCCCCcccccccCCCC--CCCCCCCcchhhhcccccc
Q 039227 356 RTHSNSWPVILKLKDWPPSCLFEERLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPD--FLKPDLGPKAYIAYGVAEE 433 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~--~~kPDLGPK~YiAYG~~~e 433 (654)
. +. .++-+-++- |.+. .+......|+|.. ....+|.. .|+. ..+|++. .|.-
T Consensus 218 ~--r~---~~~nv~sle----fs~~------~L~~~~~~P~~~~-~~d~~~~~--wp~~~~~~rP~~~--r~~~------ 271 (488)
T 3kv5_D 218 N--RP---KVLNVISLE----FSDT------KMSELVEVPDIAK-KLSWVENY--WPDDSVFPKPFVQ--KYCL------ 271 (488)
T ss_dssp S--CS---SCEEEEEEE----CTTS------GGGGGCBCCHHHH-HHCHHHHH--CCTTCSSCCCCCS--CEEE------
T ss_pred C--Cc---ccccccccc----cccc------hhhccCCCChhhh-hhchhhhc--CcccccccCcccc--eEEE------
Confidence 1 11 123333332 2111 1222233333331 11122211 2221 1233321 1322
Q ss_pred cCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCCC
Q 039227 434 LGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISSM 513 (654)
Q Consensus 434 lG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 513 (654)
.|...|.|.+|.|.... ++..++-
T Consensus 272 mG~~gS~T~~H~D~~~t-~~w~~vv------------------------------------------------------- 295 (488)
T 3kv5_D 272 MGVQDSYTDFHIDFGGT-SVWYHVL------------------------------------------------------- 295 (488)
T ss_dssp EECTTCEEEEECCGGGC-EEEEEEE-------------------------------------------------------
T ss_pred EcCCCCCCCeEECCCCC-ceeeecc-------------------------------------------------------
Confidence 33456899999999876 2222210
Q ss_pred cccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEE
Q 039227 514 QSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFV 593 (654)
Q Consensus 514 ~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~ 593 (654)
.|--.|-+|++.+.+ +.-| +.+. . ..+. ...||-+ ...+++.++
T Consensus 296 ----------~G~K~w~L~PPt~~~-~~~y--~~~~-------~-----~~~~-~~~~~~~----------~~~~~~~~~ 339 (488)
T 3kv5_D 296 ----------WGEKIFYLIKPTDEN-LARY--ESWS-------S-----SVTQ-SEVFFGD----------KVDKCYKCV 339 (488)
T ss_dssp ----------EEEEEEEEECCCHHH-HHHH--HHHH-------T-----CSSG-GGSCGGG----------SSSCCEEEE
T ss_pred ----------CeeEEEEEeCCcccc-cccc--cccc-------c-----CCcc-chhhhcc----------cccceEEEe
Confidence 133468888887655 2222 2111 0 0111 1123321 235899999
Q ss_pred eecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 594 QQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
|.+||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 340 l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 340 VKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp EETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred eCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888654
No 9
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.94 E-value=4.8e-10 Score=118.72 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=36.0
Q ss_pred CccceEEEeecCceEEecCCCcccccccc-ccchhhccccC
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLM-SCTKIALDFVS 625 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~-SCIKVA~DFVS 625 (654)
.+.++.+++.+||++|||+|-.|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 36899999999999999999999999998 58888888765
No 10
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.91 E-value=1.2e-08 Score=110.10 Aligned_cols=227 Identities=20% Similarity=0.320 Sum_probs=139.3
Q ss_pred cHHHHHHHhhcCCCEEEecccc---cCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 279 SLEHFKSHWIKGEPVIITNVLD---YSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 279 ~~~~FQ~hW~~GePViV~~v~~---~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
....|++++- ..||||++.-. ......|+-..+-+-++. ...|.++||.+...+++++++|-+=|...
T Consensus 56 t~~y~~~~~~-~~Pvli~~~~glg~~~P~~~~tv~~v~~~vG~--------d~~V~ViDv~~Q~~~~M~l~~yv~Y~~~~ 126 (397)
T 3kv9_A 56 TQRYLEKHGF-DVPIMVPKLDDLGLRLPSPTFSVMDVERYVGG--------DKVIDVIDVARQADSKMTLHNYVKYFMNP 126 (397)
T ss_dssp CHHHHHHHCS-CSCEEESSCTTSCCBCCCTTCCHHHHHHHHTT--------TSEEEEEETTTTEEEEEEHHHHHHHHHCS
T ss_pred hHHHHHhcCC-CCcEEEecCccccCcCCCCCCCHHHHHHHhCC--------CceEeeeecCcccCccccHHHHHHHHhcc
Confidence 4568888864 68999999642 222245888888776653 34689999999988899999999877654
Q ss_pred cCCCCCCceeeecCCCCCchh-hHh--hccchhhH--HhhcCCCcCccCCCCCcccccccCCCCC--CCCCCCcchhhhc
Q 039227 356 RTHSNSWPVILKLKDWPPSCL-FEE--RLPCHGAE--FMNILPYKDYTHPYSGILNIATKLPPDF--LKPDLGPKAYIAY 428 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~-F~e--~lP~h~~e--fi~~LP~~eYt~pr~G~LNLAs~LP~~~--~kPDLGPK~YiAY 428 (654)
. ++ .+|-+.||--+.. ..+ ..|..+.+ ++.. ..|+.. .+|+. +.|.-.
T Consensus 127 ~-r~----~~lnvislefs~~~L~~~~~~P~~v~d~Dwv~~------------------~wp~~~~~~rP~v--~r~l~m 181 (397)
T 3kv9_A 127 N-RP----KVLNVISLEFSDTKMSELVEVPDIAKKLSWVEN------------------YWPDDSVFPKPFV--QKYCLM 181 (397)
T ss_dssp S-CS----SCEEEEEEECTTSGGGGGCBCCHHHHHHCHHHH------------------HCCTTCSSCCCCC--SCEEEE
T ss_pred C-CC----ccceecchhhccchhccCcCCCceeeccchhhh------------------cCCchhccCCccc--eeEEEE
Confidence 1 11 2333334322211 111 12333332 1111 012211 12211 235444
Q ss_pred ccccccCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccc
Q 039227 429 GVAEELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLR 508 (654)
Q Consensus 429 G~~~elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~ 508 (654)
| ...|.|.+|.|.... ++..|+-
T Consensus 182 G------p~gS~T~~HiD~~gt-s~w~~vv-------------------------------------------------- 204 (397)
T 3kv9_A 182 G------VQDSYTDFHIDFGGT-SVWYHVL-------------------------------------------------- 204 (397)
T ss_dssp E------CTTCEEEEECCGGGC-EEEEEEE--------------------------------------------------
T ss_pred c------CCCCCCCEEECCCCC-ceeeeec--------------------------------------------------
Confidence 4 455789999998776 2222210
Q ss_pred cCCCCcccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCcc
Q 039227 509 PISSMQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVE 588 (654)
Q Consensus 509 ~~~~~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVe 588 (654)
.|--.|=+|++.+.+ +.-| +.+.. + . +. ...||-+ ...+
T Consensus 205 ---------------~GrK~w~L~PPt~~n-l~ly--~~~~~------s----~--~~-~e~~~~~----------~~~~ 243 (397)
T 3kv9_A 205 ---------------WGEKIFYLIKPTDEN-LARY--ESWSS------S----V--TQ-SEVFFGD----------KVDK 243 (397)
T ss_dssp ---------------EEEEEEEEECCCHHH-HHHH--HHHHT------S----G--GG-GGSCGGG----------GSSC
T ss_pred ---------------CceEEEEEeCCcccc-cccc--ccccc------C----C--Cc-chhhhcc----------ccCc
Confidence 134468888887765 2222 22210 0 0 11 1123322 2358
Q ss_pred ceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
++.++|.+||++|||+|..|||.|+..||-|+..|+++.|+...++..+
T Consensus 244 ~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 244 CYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp CEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred eEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887654
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.82 E-value=2.7e-08 Score=107.18 Aligned_cols=231 Identities=16% Similarity=0.257 Sum_probs=136.2
Q ss_pred cHHHHHHHhhcCCCEEEecccc---cCCCCCCChhHhHHHhhhccccCCCccceeEEeeCCCCceeecchhHHHhhhccC
Q 039227 279 SLEHFKSHWIKGEPVIITNVLD---YSSGLSWEPMVMSRAVRDTSYSKGSQKLVVKTVDCLDLCEVKINTYQFFKAYMEG 355 (654)
Q Consensus 279 ~~~~FQ~hW~~GePViV~~v~~---~~~~lsW~P~~~~r~~~e~~~~~~~~~~~v~~idCl~~~ev~i~~~~Ff~Gf~~g 355 (654)
....|+++ .=..||||.+... ....-.|+-..+-.-++. ...|.++||.+...+.+++++|.+=|...
T Consensus 55 ~~~yl~~~-g~~~Pvli~~~~glgm~~P~~~~tv~~v~~~vG~--------d~~V~ViDv~~Q~~~~M~l~~yv~Y~~~~ 125 (392)
T 3pua_A 55 TLGYMEEH-GFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGP--------ERSVDVTDVTKQKDCKMKLKEFVDYYYST 125 (392)
T ss_dssp CHHHHHHH-TTCSCEEESSCTTTTCBCCCTTCCHHHHHHHHCT--------TCEEEEEETTTTEEEEEEHHHHHHHHTCS
T ss_pred hHHHHHhc-CCCccEEEeCCccccCcCCCCCCCHHHHHHHcCC--------CcEEeeeecCcCcCccccHHHHHHHHhcc
Confidence 34566765 3467999999642 122236887777665552 34689999999998999999999977654
Q ss_pred cCCCCCCceeeecCCCCCchh-hHh--hccchhhHHhhcCCCcCccCCCCCcccccccCCCCCCCCCCCcchhhhccccc
Q 039227 356 RTHSNSWPVILKLKDWPPSCL-FEE--RLPCHGAEFMNILPYKDYTHPYSGILNIATKLPPDFLKPDLGPKAYIAYGVAE 432 (654)
Q Consensus 356 R~~~~~~p~~LKLKDWPps~~-F~e--~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~ 432 (654)
+ ++ ..|-|-|+=-++. +.+ ..|....|+- - ++.|- |..+. .-+||. ..|.-.
T Consensus 126 ~-re----~~lnv~dlefs~t~L~~~~~~P~lv~d~d-~--v~~~w-p~~~~----------~~rP~v--~r~~~m---- 180 (392)
T 3pua_A 126 N-RK----RVLNVTNLEFSDTRMSSFVEPPDIVKKLS-W--VENYW-PDDAL----------LAKPKV--TKYCLI---- 180 (392)
T ss_dssp S-CC----SCEEEEEEECTTSGGGGGCBCCHHHHHHC-H--HHHHS-CTTCS----------SCCCSC--SCEEEE----
T ss_pred C-CC----cceEeeecccccchhhccccCchhhhhhh-h--hhhcc-chhhh----------hcCCCc--eeEEEE----
Confidence 2 11 2334444322210 111 1233333221 0 00011 01110 011210 122222
Q ss_pred ccCCCCCcccccccccccceeeeecccccCChhHHHHHHHHHHHhhhhhhhhhcCCccccccccccCCCCCccccccCCC
Q 039227 433 ELGRGDSVTKLHCDMSDAVNVLMHTAKVDYSSKQVAEIEKLKRKHAIQDRREFFNPLYARDETFDMNHSKSEEKLRPISS 512 (654)
Q Consensus 433 elG~gdSvTkLH~DmSDAVNiL~h~aev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 512 (654)
|...|.|.+|.|+... ++..|+-
T Consensus 181 --Gp~gS~T~fHiD~~gT-s~w~~vi------------------------------------------------------ 203 (392)
T 3pua_A 181 --CVKDSYTDFHIDSGGA-SAWYHVL------------------------------------------------------ 203 (392)
T ss_dssp --ECTTCEEEEECCGGGC-EEEEEEE------------------------------------------------------
T ss_pred --eCCCCCCCEeECCCCC-ceeeeec------------------------------------------------------
Confidence 3455899999998765 3333321
Q ss_pred CcccccccCCCCCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEE
Q 039227 513 MQSNTLSLNGKDGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSF 592 (654)
Q Consensus 513 ~~~~~~~~~~~~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf 592 (654)
.|--.|=+|++.+.+ +..| +.+. .++ + ....||-+ ...+++.+
T Consensus 204 -----------~GrK~w~L~PPt~~n-l~~y--~~~~------~s~------~-~~e~~~~~----------~~~~~~ev 246 (392)
T 3pua_A 204 -----------KGEKTFYLIRPASAN-ISLY--ERWR------SAS------N-HSEMFFAD----------QVDKCYKC 246 (392)
T ss_dssp -----------EEEEEEEEECCCHHH-HHHH--HHHH------HST------T-GGGSCGGG----------GSSCCEEE
T ss_pred -----------cceEEEEEECCCccc-ccch--hhcc------cCc------c-hhhhhhcc----------cccceEEE
Confidence 133467788876643 2211 1111 000 1 11123321 23689999
Q ss_pred EeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 593 VQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
+|..||++|||+|..|||.|+..||-|...|++..|+..-++..+
T Consensus 247 ~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~ 291 (392)
T 3pua_A 247 IVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYE 291 (392)
T ss_dssp EEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHH
T ss_pred EECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.24 E-value=5.9e-06 Score=91.73 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=47.1
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHHH
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLTD 637 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~ 637 (654)
.....++|.+||++|||||..|+|.|+..||-|...|++..|+..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999988764
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.58 E-value=6.8e-05 Score=79.31 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=71.1
Q ss_pred CcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecC
Q 039227 525 GGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPA 604 (654)
Q Consensus 525 ~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPA 604 (654)
+--+|=.-..+.+.+++++++++.. |. +.+.++++.+. |++ .||--+.|+|++||.|+|++
T Consensus 233 ~~~~Wy~VP~e~~~~~e~l~~k~~~--------------d~-~~~~~~~~p~~---L~~-~gIPvyr~~QkpGd~Vi~~P 293 (332)
T 2xxz_A 233 GDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LYA-SNIPVYRFVQRPGDLVWINA 293 (332)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HHH-TTCCCEEEEECTTCEEEECT
T ss_pred CceEEEEECHHHHHHHHHHHHhcCC--------------ch-hhceecCCHHH---HHh-CCCCeEEEEECCCCEEEECC
Confidence 4458999999999999999976332 22 34567776643 444 59999999999999999999
Q ss_pred CCccccccccccchhhccccCccCh
Q 039227 605 GCPHQVRNLMSCTKIALDFVSPENI 629 (654)
Q Consensus 605 GcPHQVrNL~SCIKVA~DFVSPEnV 629 (654)
||-|||.|.=-|+++|-.|..|...
T Consensus 294 gayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 294 GTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CceEEEEecceeeEEEEEeCCCcHH
Confidence 9999999999999999999999865
No 14
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=97.49 E-value=0.00025 Score=78.37 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=68.1
Q ss_pred ceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 527 ALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 527 AlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
-+|=.=..+...+++++++++.. |. +.+.|+.+.+. |+ +.||.-+.|+|++||.|++++|+
T Consensus 269 c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~Pgt 329 (510)
T 4ask_A 269 CEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWINAGT 329 (510)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEECCCc
Confidence 37888888999999999876432 22 23567776653 33 47999999999999999999999
Q ss_pred ccccccccccchhhccccCccCh
Q 039227 607 PHQVRNLMSCTKIALDFVSPENI 629 (654)
Q Consensus 607 PHQVrNL~SCIKVA~DFVSPEnV 629 (654)
.|+|+|.==|+++|-.|.-|-..
T Consensus 330 yH~Vqs~Gf~~niaWNvap~t~~ 352 (510)
T 4ask_A 330 VHWVQATGWCNNIAWNVGPLTAY 352 (510)
T ss_dssp EEEEEESSSEEEEEEEECBSSHH
T ss_pred eEEEEecCeeeeeEEEecCCCHH
Confidence 99999999999999999877543
No 15
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.40 E-value=0.00024 Score=79.28 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=73.1
Q ss_pred CcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecC
Q 039227 525 GGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPA 604 (654)
Q Consensus 525 ~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPA 604 (654)
+-.+|=.-..++..|++++++++. .|. +...|+++.+. |++ .||.-+.|+|++||.|++++
T Consensus 292 g~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~~-~gIPvyr~vQkpGd~Vi~~P 352 (531)
T 3avr_A 292 GDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LYE-ANVPVYRFIQRPGDLVWINA 352 (531)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HHH-TTCCCEEEEECTTCEEEECT
T ss_pred CCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HHh-CCCCeEEEEECCCCEEEECC
Confidence 446899999999999999997652 232 34567777554 443 59999999999999999999
Q ss_pred CCccccccccccchhhccccCccChHH
Q 039227 605 GCPHQVRNLMSCTKIALDFVSPENINE 631 (654)
Q Consensus 605 GcPHQVrNL~SCIKVA~DFVSPEnV~e 631 (654)
||.|||.|+=-|+++|..|..|.-..-
T Consensus 353 gayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 353 GTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CceEEEEecceeeeeEEEeccCchHHH
Confidence 999999999999999999999986654
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=96.34 E-value=0.0042 Score=66.20 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=78.1
Q ss_pred ceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 527 ALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 527 AlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
-+|=.-.+++..|+++++++.+.+.- ..|. +=+|...+.+++.. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 48999999999999999998875421 1222 23566788889874 44 47999999999999999999999
Q ss_pred ccccccccccchhhccccCccChH
Q 039227 607 PHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 607 PHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
=|.|.|+--++..|..|..|.=+.
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~ 302 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWID 302 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHH
T ss_pred eEEEeeccccHhHhhccCcHHHHH
Confidence 999999999999999999998765
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.59 E-value=0.017 Score=61.95 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=74.5
Q ss_pred ceeeeecCCChhHHHHHHHHHHhh-hcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 039227 527 ALWDIFRREDVPKLGEYLRNHHKE-FRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAG 605 (654)
Q Consensus 527 AlWdIFrrqD~~KLreyL~kh~~E-f~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAG 605 (654)
-+|=.-.++++.|+++++++++.+ |. .|. +=+|...+.+++.. |+ +.||.-.+++|++||.|++=.|
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~~--~c~------~fL~h~~~lisP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 320 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEAK--NCP------EFLRHKMFLASPKL---LQ-ENGIRCNEIVHHEGEFMITYPY 320 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHHS--SCS------SCTTTSCEEECHHH---HH-TTTCCCEEEEECTTCEEEECTT
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhhh--hCH------HHhhCCcccCCHHH---HH-hcCCceEEEEECCCCEEEECCC
Confidence 489999999999999999998764 32 232 33456678888853 54 4799999999999999999999
Q ss_pred CccccccccccchhhccccCccChH
Q 039227 606 CPHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 606 cPHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
+=|.|.|+=-++..|..|..|+=+.
T Consensus 321 aYH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 321 GYHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CCEEEEESSSEEEEEEEECCC----
T ss_pred ceEEEEecCccHHHHHccCcHHHHH
Confidence 9999999999999999999987654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=95.35 E-value=0.02 Score=61.66 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=77.6
Q ss_pred cceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 039227 526 GALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAG 605 (654)
Q Consensus 526 GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAG 605 (654)
--+|=.-.++++.|+++++++.+.+.-. .| .+=+|...+.++.+. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~------~~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SC------EAFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HC------TTGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cc------hHHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3489999999999999999998764211 12 233566788888864 43 4799999999999999999999
Q ss_pred CccccccccccchhhccccCccChH
Q 039227 606 CPHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 606 cPHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
+=|.|.|+=-++..|..|..|.=+.
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~ 320 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIE 320 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHH
Confidence 9999999999999999998887554
No 19
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=94.25 E-value=0.044 Score=60.75 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=34.0
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc--cchhhccccCc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS--CTKIALDFVSP 626 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S--CIKVA~DFVSP 626 (654)
.+-..+.++-.+||..|||.|.+|||+++-. ++.++.-+-.+
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 56666665443
No 20
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=92.22 E-value=0.042 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEeecCceEEecCCCccccccccc
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.=..||.|+||||.||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999763
No 21
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=91.75 E-value=0.056 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEeecCceEEecCCCccccccccc
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 345789999999999999999753
No 22
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=91.41 E-value=0.074 Score=45.57 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=39.2
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
..|+ +.+-+|+....- ++.+..-++.=..||+++||+|.||+++|...+.-+.+ ++.|+
T Consensus 56 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 56 HSSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred EECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 3455 466667654432 13455566778899999999999999999876543333 33443
No 23
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=91.39 E-value=0.059 Score=46.30 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=39.7
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
..|| ..|-+|+-.-.- ++-+..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666677644332 2334455677889999999999999999998763 34444553
No 24
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=91.17 E-value=0.093 Score=46.63 Aligned_cols=41 Identities=27% Similarity=0.152 Sum_probs=30.0
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
|..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 45557777899999999999999999865433344444443
No 25
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=91.07 E-value=0.072 Score=46.72 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.0
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
+-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 445556778889999999999999999997653 333455554
No 26
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=90.85 E-value=0.065 Score=45.24 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.4
Q ss_pred Ccc-ceEEEeecCceEEecCCCccccccccccchhhccccCc
Q 039227 586 GVE-PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 586 GVe-pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP 626 (654)
.+. +=++.=..||+++||||.+|+++|...+. .+..++|
T Consensus 69 ~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 69 VGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp ECGGGCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred EeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 344 45677789999999999999999988753 3444444
No 27
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=90.75 E-value=0.1 Score=55.04 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=32.4
Q ss_pred ccceEEEeecCceEEecCCCccccccc--cccchhhcc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNL--MSCTKIALD 622 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL--~SCIKVA~D 622 (654)
..++.++-.+||+.|||+|.+|||+++ ..|+.|++-
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG 252 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence 567999999999999999999999999 468888777
No 28
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=90.37 E-value=0.1 Score=45.53 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=28.6
Q ss_pred ceEEEeecCceEEecCCCccccccccccchhhccccCc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP 626 (654)
+=++.=..||+|+||+|.||+++|..+---+.+.+++|
T Consensus 78 ~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p 115 (125)
T 3h8u_A 78 GIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP 115 (125)
T ss_dssp TCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred CeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence 33556678999999999999999986654445555555
No 29
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=90.20 E-value=0.1 Score=43.12 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=22.7
Q ss_pred ceEEEeecCceEEecCCCccccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
.=++.=..||+++||+|.+|+++|..+
T Consensus 66 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~ 92 (105)
T 1v70_A 66 EEEALLAPGMAAFAPAGAPHGVRNESA 92 (105)
T ss_dssp TEEEEECTTCEEEECTTSCEEEECCSS
T ss_pred CEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 345666899999999999999999754
No 30
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=90.19 E-value=0.14 Score=44.29 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.5
Q ss_pred EeecCceEEecCCCcccccccccc--chhhccccCcc
Q 039227 593 VQQLGEAVLIPAGCPHQVRNLMSC--TKIALDFVSPE 627 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQVrNL~SC--IKVA~DFVSPE 627 (654)
.=..||+++||+|.||+++|..+. .-+.+.|-+|+
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~ 105 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPK 105 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGG
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCC
Confidence 567899999999999999998653 33334344444
No 31
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=90.05 E-value=0.14 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.6
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4556789999999999999999864
No 32
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=89.72 E-value=0.2 Score=43.65 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=41.3
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-.
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~~ 116 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPPR 116 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESCC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCCC
Confidence 4566 466666654432 23445566777899999999999999999988 334556666643
No 33
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=89.53 E-value=0.12 Score=54.50 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=33.5
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCc-cChHH
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP-ENINE 631 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP-EnV~e 631 (654)
++.=+.||+||||||.||+++|.... |..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45567899999999999999998666 778888888 77765
No 34
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.52 E-value=0.11 Score=44.83 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=27.6
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccch
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTK 618 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIK 618 (654)
+.|..=++.=..||+++||||.||.++|...|.=
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~ 104 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKM 104 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEE
Confidence 4555667778899999999999999999866543
No 35
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=89.24 E-value=0.5 Score=51.69 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=27.4
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+|...+.++=.+||+.|||+|.+|+|+.+-
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566778999999999999999999999986
No 36
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=89.06 E-value=0.11 Score=45.31 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred ceEEEeecCceEEecCCCccccccccccch
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMSCTK 618 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~SCIK 618 (654)
+-++.=..||+|+||||.||+.+|....-|
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~ 96 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRK 96 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeE
Confidence 456778899999999999999999776544
No 37
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=89.01 E-value=0.16 Score=51.19 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=38.6
Q ss_pred EEEeecCceEEecCCCccccccccccc-hh---------hcccc-CccChHHHHHHHHHHc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCT-KI---------ALDFV-SPENINECIRLTDEFR 640 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCI-KV---------A~DFV-SPEnV~ec~~Lt~EfR 640 (654)
++.=..||.||||+|.||..+|.-.-- ++ +-||. +|..+.++++...+..
T Consensus 103 ~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 103 SIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECCTTEEEEECTTEEEEEECCSSSCEEEEEEEEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEEecccChhhccCcchHHHHHHHhhhhc
Confidence 788889999999999999999976532 22 22332 8888999998887643
No 38
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=88.91 E-value=0.16 Score=42.15 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=22.7
Q ss_pred EEEeecCceEEecCCCccccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCT 617 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCI 617 (654)
++.=..||+++||+|.+|+++|...|.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 95 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECK 95 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCE
Confidence 555579999999999999999986553
No 39
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=88.48 E-value=0.19 Score=42.24 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=29.0
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
|..=++.=..||+++||+|.+|+.+|..+---+.+-+++|.
T Consensus 59 ~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 59 VDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp ETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 34446677899999999999999999865332334444443
No 40
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=88.43 E-value=0.21 Score=46.72 Aligned_cols=41 Identities=24% Similarity=0.051 Sum_probs=29.1
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
|..=++.=..||+||||+|.+|+++|..+---+-+-+++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44556677889999999999999999865332333444444
No 41
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=88.03 E-value=0.15 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.1
Q ss_pred EeecCceEEecCCCccccccccc
Q 039227 593 VQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
.=..||++++|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 34689999999999999999765
No 42
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=88.01 E-value=0.2 Score=47.13 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=34.3
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
..|+ ++|-+|+-.--- ++-|..=++.=..||+||||+|.||+++|..
T Consensus 72 H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~ 118 (167)
T 3ibm_A 72 ERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATG 118 (167)
T ss_dssp BBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEES
T ss_pred ccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCC
Confidence 4566 667676654331 2344555777789999999999999999987
No 43
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=87.04 E-value=0.18 Score=49.99 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=40.3
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
..|| +.|-+|+-.-.- ++.|..=++.=..||+|+||+|+||+++|.-+---+.+..++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3555 567677655432 24444556677899999999999999999865444445555553
No 44
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=86.24 E-value=0.21 Score=47.08 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=33.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
+.|..=++.=..||+|+||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788999999999999999999855332 666777654
No 45
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=85.76 E-value=0.31 Score=41.47 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=26.6
Q ss_pred eEEEeecCceEEecCCCccccccccccchhhccccCccCh
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENI 629 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV 629 (654)
=++.=..||+++||+|.||..+|...|.=+ ++.|...
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~ 103 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDP 103 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC--
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCc
Confidence 467778999999999999999996554322 4455443
No 46
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=85.18 E-value=0.3 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=23.1
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 6778889999999999999999986
No 47
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=84.59 E-value=0.31 Score=42.60 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=24.5
Q ss_pred CccceEEEeecCceEEecCCCcccccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
.|..-++.=..||+|+||+|.||+.+|..
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~ 90 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAAS 90 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCC
Confidence 34456777889999999999999999974
No 48
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=84.47 E-value=0.31 Score=44.73 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=29.1
Q ss_pred ccceEEEeecCceEEecCC-CccccccccccchhhccccCc
Q 039227 587 VEPWSFVQQLGEAVLIPAG-CPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAG-cPHQVrNL~SCIKVA~DFVSP 626 (654)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p 123 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQR 123 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEEC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECC
Confidence 4445677889999999998 999999976543334444444
No 49
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=84.12 E-value=0.43 Score=43.36 Aligned_cols=25 Identities=40% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999753
No 50
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=83.73 E-value=0.49 Score=44.70 Aligned_cols=30 Identities=23% Similarity=0.007 Sum_probs=24.7
Q ss_pred CccceEEEeecCceEEecCCCccccccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
-|..=++.=..||+|+||+|.+|+++|..+
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 345556777899999999999999999654
No 51
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=83.63 E-value=0.44 Score=44.95 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 564 HPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 564 dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
|.=+++.+|+-+-.- +.-|.+=++.=..||+||||+|.+|..+|...|..++. ++|-+
T Consensus 81 ~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~ 138 (151)
T 4axo_A 81 TLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPAD 138 (151)
T ss_dssp ECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSC
T ss_pred eCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCC
Confidence 334667777644321 12345567888999999999999999999987877765 44544
No 52
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=83.55 E-value=0.5 Score=42.18 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred ceEEEeecCceEEecCCCccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
+=++.=..||+|+||||.+|..+|.
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~ 100 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSH 100 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEE
T ss_pred CEEEEECCCCEEEECCCCEEEEEcC
Confidence 4466778999999999999999997
No 53
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=83.28 E-value=0.38 Score=42.47 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.1
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
.|+ ..+-+|+..-.- ++.|..=++.=..||+++||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 455 455566544321 13344455667899999999999999999864
No 54
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=83.09 E-value=1.1 Score=38.84 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=35.7
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc--ccchhhccccCccChHHHHHHHHHHccCCc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM--SCTKIALDFVSPENINECIRLTDEFRTLPR 644 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~--SCIKVA~DFVSPEnV~ec~~Lt~EfR~Lp~ 644 (654)
+-|..=++.=..||+++||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 345556777899999999999999999973 2333333 34554443 45555554443
No 55
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=82.64 E-value=0.62 Score=41.08 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=38.0
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccc-eEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEP-WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVep-wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
.|+-.++-+|+-.-.-. +-+.. -++.=..||+|+||+|.||..+|..+-. ..+-+++|..
T Consensus 60 ~H~~~~E~~~vl~G~~~-----~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWVE-----FEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EECCSCEEEEEEESEEE-----EEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred ECCCCcEEEEEEeCEEE-----EEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 45544566665433211 33344 5778899999999999999999965422 3333456654
No 56
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=81.67 E-value=0.59 Score=44.80 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.0
Q ss_pred cceEEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4566888999999999999999999865433344455554
No 57
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=81.51 E-value=0.46 Score=42.90 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.6
Q ss_pred EEeecCceEEecCCCccccccccccchhh
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMSCTKIA 620 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVA 620 (654)
+.=..||+|+||+|.||..+|....-|+-
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~y 117 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIY 117 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEE
Confidence 44578999999999999999998777754
No 58
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=81.46 E-value=0.55 Score=46.04 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=34.4
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccc-cccc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRN-LMSC 616 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrN-L~SC 616 (654)
..|| +++-+|+-.-.- ++.|.+=++.=..||+|+||||+||.++| ...|
T Consensus 169 H~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 169 HKAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp ECCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred EECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 3456 566666544321 24455556777899999999999999999 6654
No 59
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=80.89 E-value=0.27 Score=46.81 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.7
Q ss_pred cccCCcccCcceeCH--HHHHHHHHHhCccceEEEeecCceEEecCCCcccccc
Q 039227 561 QVVHPIHDQTFYLNM--YHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRN 612 (654)
Q Consensus 561 ~v~dPIhdQ~~YL~~--~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrN 612 (654)
...|+-+++.||+-. ..- ++-|.+=++.=..||+|+||+|.+|++.+
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346777788888755 321 24556667888999999999999999985
No 60
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=80.51 E-value=0.56 Score=48.98 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.9
Q ss_pred eecCceEEecCCCcccc
Q 039227 594 QQLGEAVLIPAGCPHQV 610 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQV 610 (654)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999973
No 61
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=79.95 E-value=0.61 Score=43.92 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=31.7
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccc----eEEEeecCceEEecCCCccccccc
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEP----WSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVep----wtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
+||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 3443 45566533321 244555 677888999999999999999997
No 62
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=79.86 E-value=0.61 Score=48.39 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred EeecCceEEecCCCcccc
Q 039227 593 VQQLGEAVLIPAGCPHQV 610 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQV 610 (654)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 336899999999999953
No 63
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=78.97 E-value=0.93 Score=42.25 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=29.6
Q ss_pred CccceEEEeecCceEEecCC--CccccccccccchhhccccCc
Q 039227 586 GVEPWSFVQQLGEAVLIPAG--CPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAG--cPHQVrNL~SCIKVA~DFVSP 626 (654)
-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|
T Consensus 79 ~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p 121 (163)
T 3i7d_A 79 VDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTR 121 (163)
T ss_dssp EETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEEC
T ss_pred EECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECC
Confidence 34445677789999999999 999999976543334444444
No 64
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=78.86 E-value=0.73 Score=46.82 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=38.3
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHH
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRL 635 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~L 635 (654)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~ 301 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRT 301 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHH
Confidence 3455567888999999999999999999876 3344556788887765543
No 65
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=78.47 E-value=1.1 Score=43.05 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=28.4
Q ss_pred eEEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
.++.=..||+++||+|.+|.++|.-.---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 466778899999999999999998653333444455444
No 66
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=78.11 E-value=0.77 Score=41.02 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..-++.=..||+++||+|.||+.+|.-+
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3455667777899999999999999999753
No 67
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.03 E-value=1.1 Score=40.97 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.6
Q ss_pred EEeecCceEEecCCCcccccccccc
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
+.=..||+|+||+|.||+.+|..+.
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~ 113 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDE 113 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTB
T ss_pred EEECCCCEEEECCCCcEEeEeCCCC
Confidence 5567999999999999999998653
No 68
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=76.14 E-value=0.9 Score=44.49 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=40.1
Q ss_pred CcccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccchhhc
Q 039227 560 EQVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIAL 621 (654)
Q Consensus 560 ~~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~ 621 (654)
....|| +++.+|+-.--- ++.|.+=+..=..||.++||||.||-++|+..|+=+..
T Consensus 51 ~~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 51 TAEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred CccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 345677 788877644321 24455556677889999999999999999988765543
No 69
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=75.77 E-value=0.83 Score=45.55 Aligned_cols=31 Identities=6% Similarity=0.035 Sum_probs=25.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..=++.=..||+||||||+||+.+|.-+
T Consensus 213 ~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 213 YNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred EEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 4555667788899999999999999999754
No 70
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=75.74 E-value=0.92 Score=43.01 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.9
Q ss_pred ceEEEeecCceEEecCCCccccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346667889999999999999999854
No 71
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=75.31 E-value=0.97 Score=48.67 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=14.3
Q ss_pred ecCceEEecCCCccc
Q 039227 595 QLGEAVLIPAGCPHQ 609 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQ 609 (654)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 72
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=73.33 E-value=1.2 Score=48.83 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=14.6
Q ss_pred eecCceEEecCCCccc
Q 039227 594 QQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 594 Q~~GeAVFIPAGcPHQ 609 (654)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 4689999999999995
No 73
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=73.19 E-value=1.7 Score=41.57 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=24.7
Q ss_pred ccceEEEeecCceEEecCCCccccccccc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
|..=+|.=..||+++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44557777899999999999999999765
No 74
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=73.15 E-value=1.2 Score=44.79 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=26.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667788999999999999999999755
No 75
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=72.71 E-value=1.5 Score=39.97 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=27.9
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIAL 621 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~ 621 (654)
+.+=++.=..||+++||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34456677899999999999999999777666553
No 76
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=72.30 E-value=1.2 Score=43.92 Aligned_cols=49 Identities=18% Similarity=0.028 Sum_probs=35.5
Q ss_pred cccCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEE-ecCCCccccccccc
Q 039227 561 QVVHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVL-IPAGCPHQVRNLMS 615 (654)
Q Consensus 561 ~v~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVF-IPAGcPHQVrNL~S 615 (654)
...|| +.|-+|+-.--- ++-|.+=++.=..||+|| ||+|.||+++|..+
T Consensus 49 ~H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 49 PHQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp EECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred CEECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 34577 677777654332 234455566778999997 99999999999876
No 77
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=72.16 E-value=1.3 Score=44.85 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=34.4
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccchhhccccCccChHHHH
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECI 633 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~ 633 (654)
+.|.+-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 33455667788999999999999999998762 2234456666665544
No 78
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=71.89 E-value=1.3 Score=45.48 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=22.4
Q ss_pred hCccceEEEeecCceEEecCCCccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
|.+..=.+.=..||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 33444445556899999999999999886
No 79
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=71.17 E-value=1.3 Score=46.56 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=47.8
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccc-----eEEEeecCceEEecCCCccccccccccchhhccccCccChHHHHHHH
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEP-----WSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENINECIRLT 636 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVep-----wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt 636 (654)
.|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 67 ~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 67 IHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp ECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred cCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 4555566666643321 234555 7788899999999999999999986544 667778888776665543
No 80
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=70.70 E-value=1.2 Score=46.16 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.0
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCccC
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
++.=..||+++||+|+||+++|.-+---+.+-+++|.+
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~ 316 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGD 316 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSS
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCC
Confidence 56667899999999999999998543223344445443
No 81
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=68.74 E-value=2 Score=45.20 Aligned_cols=40 Identities=23% Similarity=0.038 Sum_probs=29.4
Q ss_pred ccceEEEeecCceEEecCCCccccccccccchhhccccCc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP 626 (654)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4555788889999999999999999985422233555543
No 82
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=68.21 E-value=0.95 Score=46.86 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.1
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4566778999999999999999985
No 83
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=68.21 E-value=1.7 Score=44.11 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445567788899999999999999999843
No 84
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=68.03 E-value=1.6 Score=45.76 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEeecCceEEecCCCccccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
.-++.=..||+++||+|.||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 345667799999999999999999754
No 85
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=67.43 E-value=2.5 Score=45.24 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.1
Q ss_pred ccceEEEeecCceEEecCCCcccccccc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
|.+=++.=..||+|+||+|+.|++.|--
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~g 166 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDT 166 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCC
Confidence 4556788899999999999999999953
No 86
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=66.80 E-value=2.5 Score=45.54 Aligned_cols=29 Identities=21% Similarity=-0.006 Sum_probs=25.7
Q ss_pred CccceEEEeecCceEEecCCCcccccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
-|.+-++.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35677899999999999999999999964
No 87
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=65.62 E-value=2.2 Score=42.40 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=25.7
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 039227 584 EFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 584 EyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+|-+..=++.=..||++|++||+||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35556666677899999999999999999643
No 88
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=62.50 E-value=4.5 Score=38.96 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=25.3
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP 626 (654)
++.=..||.|+||||.||...+-..--=+|+.|-++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~ 158 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN 158 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccC
Confidence 455689999999999999988765522233444333
No 89
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=62.46 E-value=2.6 Score=41.85 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.1
Q ss_pred CccceEEEeecCceEEecCCCcccccccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~SC 616 (654)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3455566778999999999999999998444
No 90
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=60.77 E-value=2.8 Score=41.94 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=30.7
Q ss_pred ccCCcccCcceeCHHHHHHHHHHhCcc-ceEEEeecCceEEecCCCccccccc
Q 039227 562 VVHPIHDQTFYLNMYHKKKLKEEFGVE-PWSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 562 v~dPIhdQ~~YL~~~hr~rLkeEyGVe-pwtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
..|| ++|.+|+=... -||.|. .=++.=..||.||||+|.||.+|+.
T Consensus 148 HsHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~ 194 (217)
T 4b29_A 148 HEHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTL 194 (217)
T ss_dssp EECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECC
T ss_pred CCCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEEC
Confidence 3566 45555542111 136555 4556678999999999999999864
No 91
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=59.73 E-value=3.1 Score=46.06 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=24.2
Q ss_pred ecCceEEecCCCccccccccccchhhccccC
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSCTKIALDFVS 625 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVS 625 (654)
..||+|+||||.||-..|.-+--=+++-++.
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d 148 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLD 148 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence 6799999999999999999774444444444
No 92
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=58.20 E-value=3.7 Score=39.36 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=25.5
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSP 626 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSP 626 (654)
++.=..||++ ||+|.||+.+|.-+---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4566899999 9999999999986643333444444
No 93
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=57.08 E-value=3.4 Score=42.30 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.2
Q ss_pred EEEeecCceEEecCCCccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
++.=..||++++|||.+||++|-
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~ 132 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCV 132 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEES
T ss_pred EEEEcCCCEEEECCCCCEEEEeC
Confidence 45567899999999999999994
No 94
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=57.02 E-value=5.3 Score=39.02 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.4
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 5777899999999999999876554323345444444
No 95
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=56.88 E-value=3.3 Score=45.49 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=25.0
Q ss_pred ecCceEEecCCCccccccccccchhhccccCcc
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
+.||+|+||||.||-..|.-+--=+++-++++-
T Consensus 132 ~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~ 164 (459)
T 2e9q_A 132 REGDLLVVPAGVSHWMYNRGQSDLVLIVFADTR 164 (459)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEEESS
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEecCC
Confidence 579999999999999999976544555444433
No 96
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=56.68 E-value=3.9 Score=41.09 Aligned_cols=31 Identities=6% Similarity=-0.067 Sum_probs=25.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
..|..=++.=..||++++|||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 3444556777899999999999999999854
No 97
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=56.04 E-value=3.5 Score=41.83 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=25.7
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 039227 584 EFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 584 EyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
+|-+.+=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 35555666777899999999999999999643
No 98
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=55.92 E-value=5.2 Score=39.72 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.7
Q ss_pred CccceEEEeecCceEEecCCCccccccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
-|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344556777899999999999999999843
No 99
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=54.11 E-value=6 Score=41.59 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=24.3
Q ss_pred ccceEEEeecCceEEecCCCccccccc
Q 039227 587 VEPWSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 587 Vepwtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 457888899999999999999999994
No 100
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=52.58 E-value=6.3 Score=42.46 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=24.3
Q ss_pred CccceEEEeecCceEEecCCCcccccc
Q 039227 586 GVEPWSFVQQLGEAVLIPAGCPHQVRN 612 (654)
Q Consensus 586 GVepwtf~Q~~GeAVFIPAGcPHQVrN 612 (654)
-|.+=++.-..||+|+||+|..|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 345668999999999999999999999
No 101
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=52.08 E-value=4.6 Score=45.03 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=25.9
Q ss_pred ecCceEEecCCCccccccccccchhhccccCccC
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
..||+|.||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999765445544444444
No 102
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=51.88 E-value=7.5 Score=34.45 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc
Q 039227 585 FGVEPWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 585 yGVepwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 345555667789999999999999988753
No 103
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=50.41 E-value=4.6 Score=36.90 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=36.7
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||-
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 348899999999999999999999999875 679999999983
No 104
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=49.86 E-value=5.3 Score=44.02 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.6
Q ss_pred EEeecCceEEecCCCccccccccccchhh
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMSCTKIA 620 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVA 620 (654)
..=..||+|+||||.+|-..|.-+--=++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~ 143 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVA 143 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEE
Confidence 34467999999999999999997543334
No 105
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.44 E-value=5.3 Score=36.55 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 039227 564 HPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAG 605 (654)
Q Consensus 564 dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAG 605 (654)
=|.|...-++.+.+=+.|+++|||..|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 48888888888888899999999999988 57999999888
No 106
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=47.78 E-value=4.8 Score=43.79 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.0
Q ss_pred ceEEEeecCceEEecCCCcccccccc
Q 039227 589 PWSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 589 pwtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
..++.=..||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45677788999999999999999985
No 107
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=47.03 E-value=7.2 Score=36.99 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=29.5
Q ss_pred ecCceEEecCCCcccccccc----ccchhh-----ccccCccC
Q 039227 595 QLGEAVLIPAGCPHQVRNLM----SCTKIA-----LDFVSPEN 628 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~----SCIKVA-----~DFVSPEn 628 (654)
..||.+++|+|.+|++.+.. -||-++ +-|+.|..
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~~ 127 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQDG 127 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTTC
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCCC
Confidence 58999999999999999988 887777 77888753
No 108
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=46.79 E-value=7.4 Score=37.59 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=29.6
Q ss_pred EEEeecCceEEecCCCccccccccccchhhccccCccChH
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPENIN 630 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEnV~ 630 (654)
.++..+||.|.||.|.+|...|.... |.++=||+-|-+
T Consensus 120 ~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dD 157 (175)
T 2y0o_A 120 EIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTD 157 (175)
T ss_dssp EEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCG
T ss_pred EEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCC
Confidence 45899999999999999999995554 556666665543
No 109
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=45.74 E-value=6.3 Score=43.01 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 039227 590 WSFVQQLGEAVLIPAGCPHQVRNLM 614 (654)
Q Consensus 590 wtf~Q~~GeAVFIPAGcPHQVrNL~ 614 (654)
.++.=+.||+++||+|.+|.+.|.-
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g 152 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPD 152 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECC
T ss_pred EEEEecCCCEEEECCCCcEEEEECC
Confidence 4677788999999999999999995
No 110
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=42.13 E-value=7.4 Score=42.00 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=32.2
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCc----cceEEEeecCceEEecCCCccccccc
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGV----EPWSFVQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGV----epwtf~Q~~GeAVFIPAGcPHQVrNL 613 (654)
+||-.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555556666544321 1333 35567778899999999999999998
No 111
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=41.97 E-value=9 Score=42.21 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=33.0
Q ss_pred cccCCcccCcceeCHHHHH-HHHHHhCccceEEEeecCceEEecCCCccccccccccch
Q 039227 561 QVVHPIHDQTFYLNMYHKK-KLKEEFGVEPWSFVQQLGEAVLIPAGCPHQVRNLMSCTK 618 (654)
Q Consensus 561 ~v~dPIhdQ~~YL~~~hr~-rLkeEyGVepwtf~Q~~GeAVFIPAGcPHQVrNL~SCIK 618 (654)
...||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||+++||+|.||.+.|...-+.
T Consensus 353 pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~ 411 (476)
T 1fxz_A 353 PHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFE 411 (476)
T ss_dssp EEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEE
T ss_pred ceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEE
Confidence 3456666666665443211 111112222233335789999999999999999543333
No 112
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=40.85 E-value=10 Score=32.24 Aligned_cols=31 Identities=23% Similarity=0.620 Sum_probs=21.3
Q ss_pred Cccccccc------ccccccCCCCC----cchhhhhhHHhh
Q 039227 94 NERLFCNN------FDYYRSCPRCS----YDLCLTCCREIR 124 (654)
Q Consensus 94 dErvyCdn------~D~HRsC~~Cs----ydLCL~CC~ElR 124 (654)
-..+.||. +-+--.|..|. ||||..|-...+
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 35677887 23344577775 999999987543
No 113
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=36.68 E-value=12 Score=41.65 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=49.7
Q ss_pred CCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHH-HHHHHhCccceEEEeecCceEEe
Q 039227 524 DGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKK-KLKEEFGVEPWSFVQQLGEAVLI 602 (654)
Q Consensus 524 ~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~-rLkeEyGVepwtf~Q~~GeAVFI 602 (654)
.+|.+.-+... +.|-|.. |.--.....-..+.-.....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||+++|
T Consensus 352 ~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~vi 429 (510)
T 3c3v_A 352 QAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVV 429 (510)
T ss_dssp TTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred CCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEE
Confidence 46777666654 5676632 110011111111222344568877777776543211 11111222223333578999999
Q ss_pred cCCCccccccccccchh
Q 039227 603 PAGCPHQVRNLMSCTKI 619 (654)
Q Consensus 603 PAGcPHQVrNL~SCIKV 619 (654)
|+|.||-+.|...-+.+
T Consensus 430 P~G~~H~~~Ng~e~l~~ 446 (510)
T 3c3v_A 430 PQNFAVAGKSQSDNFEY 446 (510)
T ss_dssp CTTCEEEEEECSSEEEE
T ss_pred CCCCeEEEEeCCCCEEE
Confidence 99999999995443333
No 114
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.62 E-value=17 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 039227 591 SFVQQLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 591 tf~Q~~GeAVFIPAGcPHQVrNL~S 615 (654)
++.=..||.++||+|.+|.++|...
T Consensus 123 ~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 123 IDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEEEETTEEEEECTTCCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCeEEEEECCC
Confidence 5577799999999999999999865
No 115
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=33.50 E-value=8.8 Score=42.50 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCcceeeeecCCChhHHHHHHHHHHhhhcccccCCCCcccCCcccCcceeCHHHHH-HHHHHhCccceEEEeecCceEEe
Q 039227 524 DGGALWDIFRREDVPKLGEYLRNHHKEFRHVYCSPVEQVVHPIHDQTFYLNMYHKK-KLKEEFGVEPWSFVQQLGEAVLI 602 (654)
Q Consensus 524 ~~GAlWdIFrrqD~~KLreyL~kh~~Ef~~~~~~~~~~v~dPIhdQ~~YL~~~hr~-rLkeEyGVepwtf~Q~~GeAVFI 602 (654)
.+|.+.-+.. .+.|-|... .--...+.-..+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||+++|
T Consensus 347 ~gG~v~~~~~-~~~P~L~~l-gls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vv 424 (493)
T 2d5f_A 347 KAGRISTLNS-LTLPALRQF-GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVV 424 (493)
T ss_dssp TTEEEEEEST-TTSTTHHHH-TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred CCeEEEEecc-ccCcccccc-ceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEE
Confidence 4666666654 356666321 10111111111222334567777777776543211 11111222222334578999999
Q ss_pred cCCCccccccccccchhhccccCccChHHHHHHHHHHccCCchh
Q 039227 603 PAGCPHQVRNLMSCTKIALDFVSPENINECIRLTDEFRTLPRNH 646 (654)
Q Consensus 603 PAGcPHQVrNL~SCIKVA~DFVSPEnV~ec~~Lt~EfR~Lp~~h 646 (654)
|+|.||...|...-..+..=|.|+..-..-+ +.=|+.+|.+-
T Consensus 425 P~G~~H~~~n~~e~~~~l~~~ts~~p~~~~l--~s~~~~~p~eV 466 (493)
T 2d5f_A 425 PQNFVVAEQGGEQGLEYVVFKTHHNAVSSYI--KDVFRAIPSEV 466 (493)
T ss_dssp CTTCEEEEEEEEEEEEEEEEESSTTCCEEEH--HHHHHHSCHHH
T ss_pred CCCCeEeeeeCCCCEEEEEEECCCCCcceeH--HHHHHhCCHHH
Confidence 9999999998654444333232322211111 55566666543
No 116
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=32.78 E-value=14 Score=33.66 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=21.7
Q ss_pred ecCceEEecCCCccc-cccccccchh
Q 039227 595 QLGEAVLIPAGCPHQ-VRNLMSCTKI 619 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQ-VrNL~SCIKV 619 (654)
..||.+++|+|.+|+ +.+...|+=+
T Consensus 89 ~~Gd~~~~p~g~~H~p~~~~e~~~~l 114 (145)
T 2o1q_A 89 IAPGYGYESANARHDKTEFPVASEFY 114 (145)
T ss_dssp ESSEEEEECTTCEESCCEEEEEEEEE
T ss_pred CCCEEEEECcCCccCCeECCCCeEEE
Confidence 689999999999999 8788888643
No 117
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=30.99 E-value=13 Score=28.97 Aligned_cols=28 Identities=32% Similarity=0.848 Sum_probs=19.0
Q ss_pred cccccc----ccccccCCCC-CcchhhhhhHHh
Q 039227 96 RLFCNN----FDYYRSCPRC-SYDLCLTCCREI 123 (654)
Q Consensus 96 rvyCdn----~D~HRsC~~C-sydLCL~CC~El 123 (654)
.+.||+ +-.--.|..| .||||..|-..-
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhCC
Confidence 356776 2233457777 699999998753
No 118
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=28.68 E-value=28 Score=37.19 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=24.8
Q ss_pred cceEEEeecCceEEecCCCccccccccccc
Q 039227 588 EPWSFVQQLGEAVLIPAGCPHQVRNLMSCT 617 (654)
Q Consensus 588 epwtf~Q~~GeAVFIPAGcPHQVrNL~SCI 617 (654)
.+=+|.=..||++.||+|++||..|...|+
T Consensus 315 ~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 315 NGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp TTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred CCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 445677889999999999999999975543
No 119
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=28.37 E-value=18 Score=39.82 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.1
Q ss_pred ecCceEEecCCCcccccccccc
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SC 616 (654)
+.||+|.||||.||=.-|--.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e 171 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQ 171 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred cCCCEEEECCCCcEEEEeCCCC
Confidence 5799999999999999997643
No 120
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=28.07 E-value=21 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=24.9
Q ss_pred ecCceEEecCCCccccccccccchhhccccCccC
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPEN 628 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPEn 628 (654)
+.||+|.||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999997654444444444433
No 121
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=16 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.777 Sum_probs=19.6
Q ss_pred ccccc------ccccccCCCC-CcchhhhhhHHhh
Q 039227 97 LFCNN------FDYYRSCPRC-SYDLCLTCCREIR 124 (654)
Q Consensus 97 vyCdn------~D~HRsC~~C-sydLCL~CC~ElR 124 (654)
+.||. +-+--.|..| .||||..|-..-+
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 66776 3333467777 6999999988644
No 122
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.72 E-value=23 Score=31.03 Aligned_cols=30 Identities=30% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCccccccc------ccccccCCCC-CcchhhhhhHH
Q 039227 93 SNERLFCNN------FDYYRSCPRC-SYDLCLTCCRE 122 (654)
Q Consensus 93 ~dErvyCdn------~D~HRsC~~C-sydLCL~CC~E 122 (654)
.-..+.||. +-+--.|..| .||||..|-..
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 344588988 3344567777 79999999664
No 123
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.51 E-value=9.4 Score=35.94 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=33.2
Q ss_pred cCCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 563 VHPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 563 ~dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
.=|.|...-.+.+.+-+.|+++|||..|.| +.||-|.|=+|=
T Consensus 20 ~Ap~h~Rrk~msa~LSkelr~ky~vr~~~I--kkGD~V~Vi~Gk 61 (145)
T 2zkr_t 20 NAPSHIRRKIMSSPLSKELRQKYNVRSMPI--RKDDEVQVVRGH 61 (145)
T ss_dssp TCCHHHHGGGGBC-CCHHHHHC-CC-CCBC--CTTCEEEECSST
T ss_pred cCcHHHHHHHHhcccChhHHhhcCcccccc--CCCCEEEEeecC
Confidence 458888888888888888999999998875 579999999984
No 124
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=24.25 E-value=23 Score=39.36 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.4
Q ss_pred ecCceEEecCCCccccccccc
Q 039227 595 QLGEAVLIPAGCPHQVRNLMS 615 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~S 615 (654)
+.||++.||||.||-.-|--+
T Consensus 115 ~~GDV~viPaG~~h~~~N~G~ 135 (496)
T 3ksc_A 115 REGDIIAVPTGIVFWMYNDQD 135 (496)
T ss_dssp CTTEEEEECTTCEEEEEECSS
T ss_pred CCCCEEEECCCCcEEEEcCCC
Confidence 579999999999999888654
No 125
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=23.71 E-value=11 Score=34.73 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=35.5
Q ss_pred CCcccCcceeCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 039227 564 HPIHDQTFYLNMYHKKKLKEEFGVEPWSFVQQLGEAVLIPAGC 606 (654)
Q Consensus 564 dPIhdQ~~YL~~~hr~rLkeEyGVepwtf~Q~~GeAVFIPAGc 606 (654)
=|.|...-++.+.+-+.|+++|||..+.| +-||-|.|=||=
T Consensus 22 Ap~h~r~k~msa~LSkeLr~ky~vrs~~I--kkgD~V~Vi~Gk 62 (127)
T 3u5e_Y 22 APSSQRRVLLSAPLSKELRAQYGIKALPI--RRDDEVLVVRGS 62 (127)
T ss_dssp CCHHHHHHHTEEEBCHHHHHHHTCCEEEC--CTTCEEEECSST
T ss_pred CCcchhhhheeCcCCHHHHHHhCcCcccc--cCCCEEEEeecC
Confidence 48888888888888889999999999987 579999998883
No 126
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.02 E-value=31 Score=38.71 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.6
Q ss_pred ecCceEEecCCCcccccccccc
Q 039227 595 QLGEAVLIPAGCPHQVRNLMSC 616 (654)
Q Consensus 595 ~~GeAVFIPAGcPHQVrNL~SC 616 (654)
+.||+|.||||.+|=..|--+-
T Consensus 177 r~GDviaiPaG~~~w~yN~G~~ 198 (531)
T 3fz3_A 177 REGDVVAIPAGVAYWSYNDGDQ 198 (531)
T ss_dssp ETTEEEEECTTCCEEEECCSSS
T ss_pred cCCcEEEECCCCeEEEEeCCCc
Confidence 6899999999999999997654
No 127
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=21.84 E-value=28 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.2
Q ss_pred EeecCceEEecCCC-cccccc
Q 039227 593 VQQLGEAVLIPAGC-PHQVRN 612 (654)
Q Consensus 593 ~Q~~GeAVFIPAGc-PHQVrN 612 (654)
.=+.||++||||+. +.++..
T Consensus 268 ~l~~G~~~~ipa~~~~~~i~g 288 (300)
T 1zx5_A 268 DLHRGYSCLVPASTDSFTVES 288 (300)
T ss_dssp EECTTCEEEECTTCCEEEEEE
T ss_pred EEccceEEEEeCCCceEEEEe
Confidence 34679999999998 688764
No 128
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.59 E-value=34 Score=36.84 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.3
Q ss_pred EeecCceEEecCCCccccccc
Q 039227 593 VQQLGEAVLIPAGCPHQVRNL 613 (654)
Q Consensus 593 ~Q~~GeAVFIPAGcPHQVrNL 613 (654)
.=..||+++||+|.||=..|.
T Consensus 310 ~l~~Gdv~vvP~g~~h~~~n~ 330 (416)
T 1uij_A 310 ELSEDDVFVIPAAYPFVVNAT 330 (416)
T ss_dssp EEETTCEEEECTTCCEEEEES
T ss_pred EecCCcEEEECCCCeEEEEcC
Confidence 667899999999999999988
No 129
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=20.33 E-value=33 Score=30.83 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.4
Q ss_pred EEeecCceEEecCCCccc
Q 039227 592 FVQQLGEAVLIPAGCPHQ 609 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQ 609 (654)
+.=..||+|+||||..--
T Consensus 82 ~~l~aGD~~~~P~G~~gt 99 (116)
T 3es4_A 82 VKIGPGSIVSIAKGVPSR 99 (116)
T ss_dssp EEECTTEEEEECTTCCEE
T ss_pred EEECCCCEEEECCCCeEE
Confidence 444789999999997654
No 130
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.29 E-value=28 Score=37.42 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.1
Q ss_pred EEEeecCce------EEecCCCcccccccc
Q 039227 591 SFVQQLGEA------VLIPAGCPHQVRNLM 614 (654)
Q Consensus 591 tf~Q~~GeA------VFIPAGcPHQVrNL~ 614 (654)
++.=..||. ++||||.+|...|.-
T Consensus 95 ~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g 124 (397)
T 2phl_A 95 EYFFLTSDNPIFSDHQKIPAGTIFYLVNPD 124 (397)
T ss_dssp EEEEEESSCTTSCSEEEECTTCEEEEEECC
T ss_pred EEEECCCCcccccceEEECCCCcEEEEeCC
Confidence 455678999 999999999999976
No 131
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=20.16 E-value=46 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=26.7
Q ss_pred EEeecCceEEecCCCccccccccccchhhccccCcc
Q 039227 592 FVQQLGEAVLIPAGCPHQVRNLMSCTKIALDFVSPE 627 (654)
Q Consensus 592 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVA~DFVSPE 627 (654)
..-..||+++.|.|-+|+|+|.-.=.-|.+.--+|-
T Consensus 119 ~~l~~G~~~~~~~~~iH~V~N~~~~~aVSlHvY~pp 154 (171)
T 3eqe_A 119 YFVHEGECLISTKGLIHKMSNPTSERMVSLHVYSPP 154 (171)
T ss_dssp EEEETTCEEEECTTCEEEEECCSSSCEEEEEEEESC
T ss_pred EEeCCCcEEEeCCCCEEEEECCCCCCEEEEEEeCCC
Confidence 445689999999999999999876444555544543
Done!