BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039232
(165 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 128/167 (76%), Gaps = 3/167 (1%)
Query: 1 MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
M+CL HV+SY +AIL T FI +S+L Y + KIN+ + K+ NLE ++TRFR+Q
Sbjct: 64 MNCLPHVSSYYSAILSKTSRFIAKSSL-YGCSTSSWKINFENANVKTNNLELMLTRFRVQ 122
Query: 61 CYSSSAK--KPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
YSS + K +S+KL+++P M++ KD FFVVRKGD+VGVYK+F++CQAQ+GSSIC PPV
Sbjct: 123 SYSSRGRGAKSQSQKLESKPVMEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPV 182
Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
SVYKG LPK TEEYL S GL+NALYTIRAADL EDLFG LMPC Q
Sbjct: 183 SVYKGYYLPKDTEEYLVSRGLRNALYTIRAADLKEDLFGKLMPCAFQ 229
>gi|449486556|ref|XP_004157331.1| PREDICTED: uncharacterized LOC101210930 [Cucumis sativus]
Length = 235
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 122/174 (70%), Gaps = 12/174 (6%)
Query: 1 MSCLSHVASYSAAILRGTH-NFIGRSNLH--YQSYYNPLKINYGHLGNKSVNLEFLVTRF 57
M+C S V++Y+ I R T+ F +++H +Y+ ++ ++ K+ L+ L +RF
Sbjct: 1 MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCSNAYWTS---SFHNVAVKTTALDSLCSRF 57
Query: 58 RLQCYSS-SAKKPR-----SRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGS 111
L+CYS+ +KPR S KL +EP ++ +FFVVRKGD+VGVYKSF++CQAQ+GS
Sbjct: 58 GLRCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGS 117
Query: 112 SICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
SIC PVSV+KG++LPK TEEYLAS GLKNALYTI+AAD+ DLFGSL PCT
Sbjct: 118 SICDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTFH 171
>gi|449452100|ref|XP_004143798.1| PREDICTED: uncharacterized protein LOC101210930 [Cucumis sativus]
Length = 373
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 122/173 (70%), Gaps = 12/173 (6%)
Query: 1 MSCLSHVASYSAAILRGTH-NFIGRSNLH--YQSYYNPLKINYGHLGNKSVNLEFLVTRF 57
M+C S V++Y+ I R T+ F +++H +Y+ ++ ++ K+ L+ L +RF
Sbjct: 1 MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCSNAYWTS---SFHNVAVKTTALDSLCSRF 57
Query: 58 RLQCYSS-SAKKPR-----SRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGS 111
L+CYS+ +KPR S KL +EP ++ +FFVVRKGD+VGVYKSF++CQAQ+GS
Sbjct: 58 GLRCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGS 117
Query: 112 SICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTL 164
SIC PVSV+KG++LPK TEEYLAS GLKNALYTI+AAD+ DLFGSL PCT
Sbjct: 118 SICDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTF 170
>gi|356565894|ref|XP_003551171.1| PREDICTED: uncharacterized protein LOC100809644 [Glycine max]
Length = 345
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 112/163 (68%), Gaps = 10/163 (6%)
Query: 4 LSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYS 63
LS ++SY+A+I+ T I +LH+Q P K Y G +S EF VT +CYS
Sbjct: 4 LSQLSSYTASIVGSTVRLIANRSLHHQCCSLPAKPEY--RGIRSFRSEFAVT---TRCYS 58
Query: 64 SSAKKPRSRKLKTEPQ-MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYK 122
+ + RK K EP+ MKQ KD F+VVRKGD+VG+Y S + QAQ+GSS+C+PPVSV+K
Sbjct: 59 AK----KGRKSKVEPEAMKQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVFK 114
Query: 123 GNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
G +L K TEEYL SHGLKNALYTIRA DL EDLFG L+PC LQ
Sbjct: 115 GYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPLQ 157
>gi|356526860|ref|XP_003532034.1| PREDICTED: uncharacterized protein LOC100779114 [Glycine max]
Length = 356
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 112/170 (65%), Gaps = 13/170 (7%)
Query: 1 MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
M+ LS ++SY+AAI+ T I +L ++ P K Y G +S EF +T R
Sbjct: 1 MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEY--RGIRSFRSEFALTAAR-- 56
Query: 61 CYSSSAKKPRSRKLKTEPQ-----MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICH 115
CYS+ + RK K EP+ M+Q KD F+VVRKGD+VG+Y S + QAQ+GSS+C+
Sbjct: 57 CYSAK----KGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCN 112
Query: 116 PPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
PPVSVYKG +L K TEEYL SHGLKNALYTIRA DL EDLFG L+PC Q
Sbjct: 113 PPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQ 162
>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]
Length = 453
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++ KD FFVVRKGD+VGVYK+F++CQAQ+GSSIC PPVSVYKG LPK TEEYL S GL
Sbjct: 1 MEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NALYTIRAADL EDLFG LMPC Q
Sbjct: 61 RNALYTIRAADLKEDLFGKLMPCAFQ 86
>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]
gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]
Length = 262
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M+Q KD FFVVRKGD+VGVYKSFT+CQAQ+GSS+C PPVSVYKG +L K TEEYL S GL
Sbjct: 1 MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSSVCDPPVSVYKGYSLSKDTEEYLVSRGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NALY IRA DL EDLFG+L+PC Q
Sbjct: 61 QNALYAIRAQDLKEDLFGTLVPCPFQ 86
>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa]
gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 70/86 (81%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M D FFVVRKGD+VGVYK+F +CQAQ+GSSIC PPVSVYKG +L K +E YL SHGL
Sbjct: 1 MDHENDAFFVVRKGDVVGVYKNFADCQAQVGSSICDPPVSVYKGYSLSKDSEAYLVSHGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NALYT+RAADL EDLFG LMPC Q
Sbjct: 61 QNALYTVRAADLKEDLFGVLMPCPFQ 86
>gi|334182806|ref|NP_173819.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 353
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 1 MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
M+CLSH SY A L +++ + +Y P K K V + + +
Sbjct: 1 MNCLSHARSYIALGLLKRSSYVSSIPWNECFFYMPSKSCL-----KPVAVSSVFGICSVH 55
Query: 61 CYSSSAKKPRSRKLKTE--PQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
YSS +K +S+ L + + + KD FFVVRKGD++G+YK ++CQAQ+GSS+ PV
Sbjct: 56 SYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPV 115
Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
SVYKG +LPK TEEYL+S GLK LY++RA+DL +D+FG+L PC Q
Sbjct: 116 SVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQ 162
>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 1 MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
M+CLSH SY A L +++ + +Y P K K V + + +
Sbjct: 1 MNCLSHARSYIALGLLKRSSYVSSIPWNECFFYMPSKSCL-----KPVAVSSVFGICSVH 55
Query: 61 CYSSSAKKPRSRKLKTE--PQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
YSS +K +S+ L + + + KD FFVVRKGD++G+YK ++CQAQ+GSS+ PV
Sbjct: 56 SYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPV 115
Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
SVYKG +LPK TEEYL+S GLK LY++RA+DL +D+FG+L PC Q
Sbjct: 116 SVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQ 162
>gi|359488729|ref|XP_002280233.2| PREDICTED: uncharacterized protein LOC100242330 [Vitis vinifera]
gi|296087711|emb|CBI34967.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 65/86 (75%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++ KD F+VVRKGD+VG+YKSF+ECQAQ G S+C P VSVYKG LPK E +LASHGL
Sbjct: 1 MEEEKDAFYVVRKGDIVGLYKSFSECQAQAGFSVCDPSVSVYKGYCLPKDAEVFLASHGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
KNA Y I AAD+ D+FG L C Q
Sbjct: 61 KNASYVINAADVKGDIFGKLQACPFQ 86
>gi|357123204|ref|XP_003563302.1| PREDICTED: uncharacterized protein LOC100831320 [Brachypodium
distachyon]
Length = 349
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%)
Query: 70 RSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKG 129
RS K P G D F+VVRKGD++G+YK+ +CQAQ+ +S+C PPV+VYKG +L K
Sbjct: 73 RSAAKKAAPMDPSGGDPFYVVRKGDVIGIYKNLADCQAQVSNSVCDPPVTVYKGYSLRKE 132
Query: 130 TEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
TEEYLA+ GLK+ALY+I AAD ++LF L+PC Q
Sbjct: 133 TEEYLAARGLKHALYSINAADARDELFDDLVPCPFQ 168
>gi|255552696|ref|XP_002517391.1| nuclease, putative [Ricinus communis]
gi|223543402|gb|EEF44933.1| nuclease, putative [Ricinus communis]
Length = 255
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++ KD F+VVRKGD+VG+YKS +CQAQ+GSS+C+P VSV+KG L K E+YL SHG+
Sbjct: 1 MEEEKDVFYVVRKGDVVGIYKSLRDCQAQVGSSVCNPSVSVFKGYGLAKDAEDYLVSHGI 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
K+A ++I A D+ DLFG L+PC Q
Sbjct: 61 KDAAFSIHATDVQPDLFGKLVPCPFQ 86
>gi|387169560|gb|AFJ66219.1| hypothetical protein 34G24.24 [Capsella rubella]
Length = 448
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 71/104 (68%)
Query: 59 LQCYSSSAKKPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
+ CYSS +K +S+ + KD FFVVRKGD+VG++K ++C Q+GSS+ PV
Sbjct: 151 IHCYSSRSKTAKSKLSSAVSSPDKDKDAFFVVRKGDIVGIFKDLSDCHPQVGSSVYDLPV 210
Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPC 162
+VYKG LPK TEEYL G+K LY+ RA+DL ED+FG+L PC
Sbjct: 211 NVYKGYLLPKDTEEYLNIVGMKKPLYSFRASDLKEDMFGALTPC 254
>gi|8843844|dbj|BAA97370.1| unnamed protein product [Arabidopsis thaliana]
Length = 316
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 62/82 (75%)
Query: 84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNAL 143
KD FFVVRKGD+VG+YK +CQAQ+GSS+ PPVSVYKG +L K TEE L++ GLK L
Sbjct: 78 KDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPL 137
Query: 144 YTIRAADLTEDLFGSLMPCTLQ 165
Y RA DL ED+FG+L PC Q
Sbjct: 138 YVFRALDLKEDMFGALTPCLFQ 159
>gi|242089145|ref|XP_002440405.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
gi|241945690|gb|EES18835.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
Length = 341
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 65 SAKKPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGN 124
+AK P + P M ++ F+V+RKGD++G+ K+ ++CQAQ+ +S+C PPV+VYKG
Sbjct: 62 AAKAPMEKSAAKVP-MYSSREPFYVIRKGDVIGICKTLSDCQAQVSNSVCDPPVTVYKGY 120
Query: 125 ALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
+L K TEEYLA+ GL+NA+Y+I AAD ++LFG L+PC Q
Sbjct: 121 SLRKETEEYLAARGLRNAVYSIDAADARDELFGDLVPCPFQ 161
>gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana]
gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana]
gi|332008647|gb|AED96030.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332008648|gb|AED96031.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 322
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 62/82 (75%)
Query: 84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNAL 143
KD FFVVRKGD+VG+YK +CQAQ+GSS+ PPVSVYKG +L K TEE L++ GLK L
Sbjct: 78 KDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPL 137
Query: 144 YTIRAADLTEDLFGSLMPCTLQ 165
Y RA DL ED+FG+L PC Q
Sbjct: 138 YVFRALDLKEDMFGALTPCLFQ 159
>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 536
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 65/79 (82%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
FFVVRKGD++G+YK ++CQAQ+GSS+ PVSVYKG +LPK TEEYL++ GLK LY++
Sbjct: 85 FFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSAVGLKKPLYSL 144
Query: 147 RAADLTEDLFGSLMPCTLQ 165
RA+DL +D+FG+L PC Q
Sbjct: 145 RASDLKDDMFGALTPCLFQ 163
>gi|79330550|ref|NP_001032054.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|222424272|dbj|BAH20093.1| AT5G51080 [Arabidopsis thaliana]
gi|332008649|gb|AED96032.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 259
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 62/82 (75%)
Query: 84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNAL 143
KD FFVVRKGD+VG+YK +CQAQ+GSS+ PPVSVYKG +L K TEE L++ GLK L
Sbjct: 15 KDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPL 74
Query: 144 YTIRAADLTEDLFGSLMPCTLQ 165
Y RA DL ED+FG+L PC Q
Sbjct: 75 YVFRALDLKEDMFGALTPCLFQ 96
>gi|30678332|ref|NP_186790.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|145331720|ref|NP_001078087.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640141|gb|AEE73662.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640142|gb|AEE73663.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 294
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M+ KD F++VRKGD++GVY+S +ECQ Q GSS+ HP +SVYKG PKG E+ L+S G+
Sbjct: 5 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
KNAL+++ A+ + +D FG L+PC +Q
Sbjct: 65 KNALFSVNASHVKDDAFGKLIPCPVQ 90
>gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H [Arabidopsis thaliana]
Length = 290
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M+ KD F++VRKGD++GVY+S +ECQ Q GSS+ HP +SVYKG PKG E+ L+S G+
Sbjct: 1 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
KNAL+++ A+ + +D FG L+PC +Q
Sbjct: 61 KNALFSVNASHVKDDAFGKLIPCPVQ 86
>gi|399529259|gb|AFP44687.1| hypothetical protein, partial [Eragrostis tef]
Length = 234
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 76 TEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLA 135
EP M G + F++VRKG+++G+YK+ +ECQAQ+ S+C P V+V+KG +L K TEEYLA
Sbjct: 82 AEPPMDAG-EPFYLVRKGNVIGIYKTLSECQAQVSKSVCDPSVTVFKGYSLRKDTEEYLA 140
Query: 136 SHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
+ GL+NALY+I AAD ++LFG L+PC Q
Sbjct: 141 ARGLRNALYSIDAADARDELFGDLVPCPFQ 170
>gi|224077608|ref|XP_002305325.1| predicted protein [Populus trichocarpa]
gi|222848289|gb|EEE85836.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQL-GSSICHPPVSVYKGNALPKGTEEYLASHG 138
M++ KD F+VVRKGD++GVY +F++CQ Q SS+C+P VSV+KG LPK +EYL+SHG
Sbjct: 1 MEEEKDAFYVVRKGDIIGVYNNFSDCQLQAQSSSVCNPSVSVFKGYGLPKEAKEYLSSHG 60
Query: 139 LKNALYTIRAADLTEDLFGSLMPCTLQ 165
L NA Y+I+A D+ DLFG L+PC Q
Sbjct: 61 LNNAAYSIQAPDVQNDLFGKLLPCPFQ 87
>gi|34146846|gb|AAQ62431.1| At3g01410 [Arabidopsis thaliana]
gi|51970934|dbj|BAD44159.1| putative RNase H [Arabidopsis thaliana]
Length = 294
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 66/86 (76%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M+ KD F++VRKGD++GVY+S +ECQ Q GSS+ HP +SVYKG PKG E+ L+S G+
Sbjct: 5 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NAL+++ A+ + +D FG L+PC +Q
Sbjct: 65 RNALFSVNASHVKDDAFGKLIPCPVQ 90
>gi|297795913|ref|XP_002865841.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
gi|297311676|gb|EFH42100.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 72/113 (63%), Gaps = 7/113 (6%)
Query: 59 LQCYSSSAKKPRSRKLKTEPQMKQG---KDEFFVVRKGDLVGVYKSFTECQAQLGSSICH 115
+ CYS+ +K +S K+ T + KD FFVVRKGD++G+YK +CQAQ+GSS+
Sbjct: 50 VHCYSTRSKTAKS-KISTAVSVSDSDKEKDAFFVVRKGDIIGIYKDLIDCQAQVGSSVYD 108
Query: 116 PPVSVYKGNA---LPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
PVSVYKG L TEEYL+S GLK LY RA DL ED+FG L PC Q
Sbjct: 109 LPVSVYKGKGYSLLKDTTEEYLSSVGLKKPLYVFRAFDLKEDMFGPLTPCIFQ 161
>gi|326499834|dbj|BAJ90752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 76 TEPQMKQGK-DEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYL 134
T P M D F+VVRKGD++G+Y + +CQAQ+ +S+C P V+VYKG +L K TEEYL
Sbjct: 78 TPPPMDSASGDPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYL 137
Query: 135 ASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
A+ GLKNALY+I AAD ++LF L PC Q
Sbjct: 138 AARGLKNALYSINAADAKDELFDDLAPCPFQ 168
>gi|357144247|ref|XP_003573224.1| PREDICTED: uncharacterized protein LOC100841248 [Brachypodium
distachyon]
Length = 352
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 66/83 (79%)
Query: 83 GKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNA 142
G D F+VVRKGD++G+YK+ +CQAQ+ +S+C PPV+VYKG +L K TEE+LA+ GLK+A
Sbjct: 89 GGDPFYVVRKGDVIGIYKNLADCQAQVSNSVCDPPVTVYKGYSLRKETEEHLAARGLKHA 148
Query: 143 LYTIRAADLTEDLFGSLMPCTLQ 165
+Y+I +AD ++LF L+PC Q
Sbjct: 149 MYSINSADARDELFDDLVPCPFQ 171
>gi|38636806|dbj|BAD03047.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|38636983|dbj|BAD03243.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|125560347|gb|EAZ05795.1| hypothetical protein OsI_28030 [Oryza sativa Indica Group]
gi|125602385|gb|EAZ41710.1| hypothetical protein OsJ_26246 [Oryza sativa Japonica Group]
Length = 351
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 65/84 (77%)
Query: 82 QGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKN 141
G + F+VVRKGD++G+YKS ++CQAQ+ +S+C P V+VYKG +L K TEEYLA+ GL+N
Sbjct: 83 DGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARGLRN 142
Query: 142 ALYTIRAADLTEDLFGSLMPCTLQ 165
LY+I AAD ++LF L+PC Q
Sbjct: 143 PLYSINAADARDELFDDLVPCPFQ 166
>gi|226532456|ref|NP_001145250.1| uncharacterized protein LOC100278534 [Zea mays]
gi|195653679|gb|ACG46307.1| hypothetical protein [Zea mays]
Length = 276
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 67/86 (77%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
+ ++ F+V+RKGD++GVYK+ ++CQAQ S+ HP V+VYKG +L K TEEYLA+ GL
Sbjct: 12 IDSSREPFYVIRKGDVIGVYKNLSDCQAQASKSVLHPSVTVYKGYSLRKETEEYLAARGL 71
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NA+Y+I AAD +++LFG L+PC Q
Sbjct: 72 RNAVYSIGAADASDELFGDLVPCPFQ 97
>gi|326505852|dbj|BAJ91165.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 62/81 (76%)
Query: 85 DEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALY 144
D F+VVRKGD++G+Y + +CQAQ+ +S+C P V+VYKG +L K TEEYLA+ GLKNALY
Sbjct: 7 DPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYLAARGLKNALY 66
Query: 145 TIRAADLTEDLFGSLMPCTLQ 165
+I AAD ++LF L PC Q
Sbjct: 67 SINAADAKDELFDDLAPCPFQ 87
>gi|356550140|ref|XP_003543447.1| PREDICTED: uncharacterized protein LOC100796237 [Glycine max]
Length = 283
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 64/86 (74%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M + KD F+VVRKGD+VG+YKSF++ Q L SS+ PVS+YKG +LP+ TEEYL SHGL
Sbjct: 1 MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
K A Y+I AAD+ E LFG L+ C Q
Sbjct: 61 KGAPYSISAADVNEGLFGRLVACPYQ 86
>gi|224102015|ref|XP_002312512.1| predicted protein [Populus trichocarpa]
gi|222852332|gb|EEE89879.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 69/86 (80%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M KD FFVVRKG +VGVYK+F +C+AQLG+SI PPVSVYK +L K +E YL SHGL
Sbjct: 1 MDHEKDAFFVVRKGGVVGVYKNFADCEAQLGTSILDPPVSVYKSYSLSKDSEAYLVSHGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NALYTIRAADL EDLFG+L+PC Q
Sbjct: 61 QNALYTIRAADLKEDLFGTLIPCPFQ 86
>gi|387169510|gb|AFJ66171.1| hypothetical protein 11M19.15 [Arabidopsis halleri]
Length = 231
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKG-TEEYLASHGLKNA 142
KD FFVVRKGD++G+YK +CQAQ+GSS+ PPVSVYKG +L K TEEYL+S GLK
Sbjct: 17 KDAFFVVRKGDIIGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTTEEYLSSVGLKKP 76
Query: 143 LYTIRAADLTEDLFGSLMPCTLQ 165
LY RA DL ED+FG+L P Q
Sbjct: 77 LYVFRALDLKEDMFGALTPFLFQ 99
>gi|218184677|gb|EEC67104.1| hypothetical protein OsI_33899 [Oryza sativa Indica Group]
Length = 323
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + +++VRKG++V VYKS T+CQAQ+ SS+ P S YKGN+ + EEYL+S GL
Sbjct: 1 MEEGSN-YYLVRKGEMVAVYKSLTDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDLFG+L+PCT Q
Sbjct: 60 SNATYVINAAELREDLFGTLIPCTFQ 85
>gi|326488477|dbj|BAJ93907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 61/81 (75%)
Query: 85 DEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALY 144
D F+VVRKGD++G+Y + +CQAQ+ +S+C P V+VYKG +L K TEEYLA+ GLKNA Y
Sbjct: 7 DPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYLAARGLKNAPY 66
Query: 145 TIRAADLTEDLFGSLMPCTLQ 165
+I AAD ++LF L PC Q
Sbjct: 67 SINAADAKDELFDDLAPCPFQ 87
>gi|242081781|ref|XP_002445659.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
gi|241942009|gb|EES15154.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
Length = 268
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
F+VVRKGD++G+YK+ +ECQAQ+G+S+ P V+V+KG +L K TEEYLA+ GL+NALY I
Sbjct: 10 FYVVRKGDVIGIYKTLSECQAQVGNSVRDPSVTVFKGYSLRKETEEYLAARGLRNALYAI 69
Query: 147 RAADLTEDLFGSLMPCTLQ 165
AAD ++LF L+PC Q
Sbjct: 70 DAADARDELFDDLVPCPFQ 88
>gi|115482348|ref|NP_001064767.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
gi|113639376|dbj|BAF26681.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|222612954|gb|EEE51086.1| hypothetical protein OsJ_31786 [Oryza sativa Japonica Group]
Length = 323
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + +++VRKG++V VYKS +CQAQ+ SS+ P S YKGN+ + EEYL+S GL
Sbjct: 1 MEEGSN-YYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDLFG+L+PCT Q
Sbjct: 60 SNATYVINAAELREDLFGTLIPCTFQ 85
>gi|14140290|gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa Japonica Group]
Length = 289
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + +++VRKG++V VYKS +CQAQ+ SS+ P S YKGN+ + EEYL+S GL
Sbjct: 1 MEEGSN-YYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDLFG+L+PCT Q
Sbjct: 60 SNATYVINAAELREDLFGTLIPCTFQ 85
>gi|365222890|gb|AEW69797.1| Hop-interacting protein THI034 [Solanum lycopersicum]
Length = 288
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 65/83 (78%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M KD F+VVRKGD++GVYK+ ++ QA L +SI P +SV+KG L K +EEYLASHGL
Sbjct: 1 MGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGL 60
Query: 140 KNALYTIRAADLTEDLFGSLMPC 162
KNA+Y++ +D+ +DLFG+L+PC
Sbjct: 61 KNAMYSMDFSDVRDDLFGTLIPC 83
>gi|223949765|gb|ACN28966.1| unknown [Zea mays]
gi|413942425|gb|AFW75074.1| putative rnase H family protein [Zea mays]
Length = 331
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 65/86 (75%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
+ ++ F+V+RKGD++GVYK+ ++CQAQ S+ HP V+VYKG +L K TEEYLA+ G
Sbjct: 67 IDSSREPFYVIRKGDVIGVYKNLSDCQAQASKSVLHPSVTVYKGYSLRKETEEYLAARGF 126
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+NA+ +I AAD +++LFG L+PC Q
Sbjct: 127 RNAVCSIGAADASDELFGDLVPCPFQ 152
>gi|326494200|dbj|BAJ90369.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G D ++VVRKGD+V VY+S +CQAQ+ SS+ P S YKG K EY +SHGL
Sbjct: 1 MEEGSD-YYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAEYFSSHGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA YTI AA+L EDL G+L+PCT Q
Sbjct: 60 SNASYTISAAELREDLLGALVPCTFQ 85
>gi|326490670|dbj|BAJ90002.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G D ++VVRKGD+V VY+S +CQAQ+ SS+ P S YKG K EY +SHGL
Sbjct: 1 MEEGSD-YYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAEYFSSHGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA YTI AA+L EDL G+L+PCT Q
Sbjct: 60 SNASYTISAAELREDLLGALVPCTFQ 85
>gi|413921723|gb|AFW61655.1| putative rnase H family protein [Zea mays]
Length = 262
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
F+VVRKGD++G+YK+ +ECQAQ+ +S+ P V+V+KG +L K TEEYLA+ GL+NALY I
Sbjct: 10 FYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALYAI 69
Query: 147 RAADLTEDLFGSLMPCTLQ 165
A D ++LF L+PC Q
Sbjct: 70 DATDARDELFDDLVPCPFQ 88
>gi|195627916|gb|ACG35788.1| retrotransposon protein Ty3-gypsy subclass [Zea mays]
gi|238009648|gb|ACR35859.1| unknown [Zea mays]
gi|413921724|gb|AFW61656.1| putative rnase H family protein [Zea mays]
Length = 336
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
F+VVRKGD++G+YK+ +ECQAQ+ +S+ P V+V+KG +L K TEEYLA+ GL+NALY I
Sbjct: 77 FYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALYAI 136
Query: 147 RAADLTEDLFGSLMPCTLQ 165
A D ++LF L+PC Q
Sbjct: 137 DATDARDELFDDLVPCPFQ 155
>gi|194700066|gb|ACF84117.1| unknown [Zea mays]
gi|219887863|gb|ACL54306.1| unknown [Zea mays]
gi|413921720|gb|AFW61652.1| putative rnase H family protein isoform 1 [Zea mays]
gi|413921721|gb|AFW61653.1| putative rnase H family protein isoform 2 [Zea mays]
Length = 269
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
F+VVRKGD++G+YK+ +ECQAQ+ +S+ P V+V+KG +L K TEEYLA+ GL+NALY I
Sbjct: 10 FYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALYAI 69
Query: 147 RAADLTEDLFGSLMPCTLQ 165
A D ++LF L+PC Q
Sbjct: 70 DATDARDELFDDLVPCPFQ 88
>gi|413921722|gb|AFW61654.1| putative rnase H family protein [Zea mays]
Length = 205
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 87 FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTI 146
F+VVRKGD++G+YK+ +ECQAQ+ +S+ P V+V+KG +L K TEEYLA+ GL+NALY I
Sbjct: 10 FYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALYAI 69
Query: 147 RAADLTEDLFGSLMPCTLQ 165
A D ++LF L+PC Q
Sbjct: 70 DATDARDELFDDLVPCPFQ 88
>gi|212275993|ref|NP_001130760.1| uncharacterized protein LOC100191864 [Zea mays]
gi|194690044|gb|ACF79106.1| unknown [Zea mays]
Length = 292
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G D ++VVRKGD+V VYK+ ++CQ Q+ SS+ P S YKG++ +G EEYL+S GL
Sbjct: 1 MEEGND-YYVVRKGDVVAVYKTLSDCQGQICSSVSGPAASAYKGHSWSRGKEEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+A Y I AA+L ED+ G L+PC+ Q
Sbjct: 60 SDATYVINAAELREDILGPLVPCSFQ 85
>gi|194699332|gb|ACF83750.1| unknown [Zea mays]
Length = 292
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G D + VVRKGD+V VYK+ ++CQ Q+ SS+ P S YKG++ +G EEYL+S GL
Sbjct: 1 MEEGND-YHVVRKGDVVAVYKTLSDCQGQICSSVSGPAASAYKGHSWSRGKEEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
+A Y I AA+L ED+ G L+PC+ Q
Sbjct: 60 SDATYVINAAELREDILGPLVPCSFQ 85
>gi|357146485|ref|XP_003574009.1| PREDICTED: uncharacterized protein LOC100824410 isoform 3
[Brachypodium distachyon]
Length = 280
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + ++VV+KG+ V VYK+ +CQAQ+ SS+ P S YKG+ K EYL+S GL
Sbjct: 1 MEEGSN-YYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDL G+L+PCT Q
Sbjct: 60 INASYAISAAELREDLLGALVPCTFQ 85
>gi|357146480|ref|XP_003574007.1| PREDICTED: uncharacterized protein LOC100824410 isoform 1
[Brachypodium distachyon]
Length = 319
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + ++VV+KG+ V VYK+ +CQAQ+ SS+ P S YKG+ K EYL+S GL
Sbjct: 1 MEEGSN-YYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDL G+L+PCT Q
Sbjct: 60 INASYAISAAELREDLLGALVPCTFQ 85
>gi|357146482|ref|XP_003574008.1| PREDICTED: uncharacterized protein LOC100824410 isoform 2
[Brachypodium distachyon]
Length = 298
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M++G + ++VV+KG+ V VYK+ +CQAQ+ SS+ P S YKG+ K EYL+S GL
Sbjct: 1 MEEGSN-YYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGL 59
Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
NA Y I AA+L EDL G+L+PCT Q
Sbjct: 60 INASYAISAAELREDLLGALVPCTFQ 85
>gi|255596246|ref|XP_002536496.1| hypothetical protein RCOM_2088250 [Ricinus communis]
gi|223519506|gb|EEF25888.1| hypothetical protein RCOM_2088250 [Ricinus communis]
Length = 128
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 30/135 (22%)
Query: 1 MSCLSHVASYSAAIL-RGTHNFIGRSNLHY--------------QSYYNPLKINYGHLGN 45
M+C+S V+SY+AAI RG RS H +S+ P+ + +
Sbjct: 1 MNCISRVSSYTAAIFGRGKGILFSRSVSHQCYCYSTSTCTPLRNRSFERPVSFD-----S 55
Query: 46 KSVNLEFLVTRFRLQCYSS---SAKKPRSRKLK-----TEPQMKQGKDEFFVVRKGDLVG 97
NL+F V RFR QC S+ SAK R RKL T P M+Q KD FFVVRKGD+VG
Sbjct: 56 VKFNLQF-VFRFRAQCSSTKKGSAKVSRERKLDPTESATAP-MEQEKDAFFVVRKGDVVG 113
Query: 98 VYKSFTECQAQLGSS 112
VYKSFT+CQAQ+GSS
Sbjct: 114 VYKSFTDCQAQVGSS 128
>gi|449459420|ref|XP_004147444.1| PREDICTED: uncharacterized protein LOC101219107 [Cucumis sativus]
gi|449517156|ref|XP_004165612.1| PREDICTED: uncharacterized LOC101219107 [Cucumis sativus]
Length = 255
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
M+ KD ++VV KGD+ G Y++ E G P ++YKG L K EEYL +HGL
Sbjct: 1 MEGDKDAYYVVHKGDVFGFYRTAKELLTHPGR--FDPDATIYKGYHLSKEAEEYLVAHGL 58
Query: 140 KNALYTIRAADLTEDLFGSLMPC 162
++A Y+I AA++T+DLFG ++PC
Sbjct: 59 QSATYSISAANVTKDLFGKILPC 81
>gi|255581196|ref|XP_002531411.1| conserved hypothetical protein [Ricinus communis]
gi|223529004|gb|EEF30995.1| conserved hypothetical protein [Ricinus communis]
Length = 500
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 61 CYSS---SAKKPRSRKLK-----TEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSS 112
CYS+ SAK R RKL T P M+Q KD FFVVRKGD+VGVYKSFT+CQAQ+GSS
Sbjct: 442 CYSTKKGSAKVSRERKLDPTESATAP-MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSS 500
>gi|297789419|ref|XP_002862678.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308343|gb|EFH38936.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 59 LQCYSSSAKKPRSRKLKTEPQMKQG---KDEFFVVRKGDLVGVYKSFTECQAQLGSSICH 115
+ CYS+ +K +S K+ T + KD FFVVRKGD++G+YK +CQAQ+GSS+
Sbjct: 57 VHCYSTRSKTAKS-KISTAVSVSDSDKEKDAFFVVRKGDIIGIYKDLIDCQAQVGSSVYD 115
Query: 116 PPVSVYK 122
PVSVYK
Sbjct: 116 LPVSVYK 122
>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]
Length = 492
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 76 TEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSI 113
+ + ++ KD FFVVRKGD++G+YK +CQAQ+GSS+
Sbjct: 42 ADKEKEKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSV 79
>gi|402836294|ref|ZP_10884834.1| ribonuclease HII / caulimovirus viroplasmin / ribonuclease HI
multi-domain protein [Mogibacterium sp. CM50]
gi|402271390|gb|EJU20634.1| ribonuclease HII / caulimovirus viroplasmin / ribonuclease HI
multi-domain protein [Mogibacterium sp. CM50]
Length = 438
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 72 RKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQL 109
RK + K GK +F+ VR G + G+Y ++ EC+AQ+
Sbjct: 215 RKFEASEGSKVGKKQFYAVRTGRVPGIYSTWDECKAQV 252
>gi|375254257|ref|YP_005013424.1| ribonuclease H [Tannerella forsythia ATCC 43037]
gi|363407955|gb|AEW21641.1| ribonuclease H [Tannerella forsythia ATCC 43037]
Length = 237
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 74 LKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQL 109
+KTE +M + K +++VV +G G+Y+ +TEC+ Q+
Sbjct: 21 IKTEKRMGKSKQKYYVVWRGVCPGIYEDWTECKLQI 56
>gi|423332823|ref|ZP_17310605.1| ribonuclease H [Lactobacillus reuteri ATCC 53608]
gi|337727941|emb|CCC03030.1| ribonuclease H [Lactobacillus reuteri ATCC 53608]
Length = 222
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYT 145
+++ V+KG G+YK++TECQ ++ P + +K +G E+L + G N + +
Sbjct: 4 KYYAVKKGRHPGIYKTWTECQKEVNGY----PNAKFKSFLTLEGANEWLQTTG--NTVTS 57
Query: 146 IRAADLTEDLF 156
+A + ++D+
Sbjct: 58 TKAVNYSDDIL 68
>gi|154504406|ref|ZP_02041144.1| hypothetical protein RUMGNA_01910 [Ruminococcus gnavus ATCC 29149]
gi|336432357|ref|ZP_08612192.1| hypothetical protein HMPREF0991_01311 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795335|gb|EDN77755.1| hypothetical protein RUMGNA_01910 [Ruminococcus gnavus ATCC 29149]
gi|336018694|gb|EGN48431.1| hypothetical protein HMPREF0991_01311 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 209
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYL 134
K++++ VRKG + G+Y++++ECQ Q + P +V+KG + + +L
Sbjct: 3 KNKYYAVRKGRIPGIYRTWSECQKQ----VTGYPGAVFKGFVTEEEAQSFL 49
>gi|194468452|ref|ZP_03074438.1| ribonuclease H [Lactobacillus reuteri 100-23]
gi|194453305|gb|EDX42203.1| ribonuclease H [Lactobacillus reuteri 100-23]
Length = 222
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYT 145
+++ V+KG G+YK++ ECQ ++ P + +K KG E+L + G N + +
Sbjct: 4 KYYAVKKGRHPGIYKTWAECQKEVNGY----PNAKFKSFLTLKGANEWLQATG--NTVPS 57
Query: 146 IRAADLTEDLF 156
+A + ++D+
Sbjct: 58 TKAVNYSDDIL 68
>gi|227544970|ref|ZP_03975019.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
gi|338204282|ref|YP_004650427.1| ribonuclease HI [Lactobacillus reuteri SD2112]
gi|227185081|gb|EEI65152.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
gi|336449522|gb|AEI58137.1| ribonuclease HI [Lactobacillus reuteri SD2112]
Length = 222
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYT 145
+++ V+KG G+YK++ ECQ ++ P + +K KG E+L + G N + +
Sbjct: 4 KYYAVKKGRHPGIYKTWAECQKEVNGY----PNAKFKSFLTLKGANEWLQATG--NIVPS 57
Query: 146 IRAADLTEDLF 156
+A D ++++
Sbjct: 58 TKAVDYSDNIL 68
>gi|392558791|gb|EIW51977.1| hypothetical protein TRAVEDRAFT_156671 [Trametes versicolor
FP-101664 SS1]
Length = 342
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQ 108
+K GK F+ V +G + GVY ++ ECQAQ
Sbjct: 2 VKSGKPGFYAVARGRVPGVYTTWDECQAQ 30
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,521,942,925
Number of Sequences: 23463169
Number of extensions: 95471639
Number of successful extensions: 197789
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 197715
Number of HSP's gapped (non-prelim): 70
length of query: 165
length of database: 8,064,228,071
effective HSP length: 126
effective length of query: 39
effective length of database: 9,402,836,073
effective search space: 366710606847
effective search space used: 366710606847
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)