BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039233
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 205/388 (52%), Gaps = 84/388 (21%)
Query: 8 ERFELSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDS 67
E F Y D+LQSPLQ PLMDNLE+QTYE FEKD
Sbjct: 298 ELFAKGYEDYLQSPLQ--------------------------PLMDNLESQTYEVFEKDP 331
Query: 68 VKYIQYQRAIGNALVDRVPDXXXXXXXXXXXXXG------------------RKLKIYAV 109
+KY QYQ+AI L+DRVP+ G R++K+YAV
Sbjct: 332 IKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAV 391
Query: 110 EKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNELSPECL 169
EKNPNAVVTL + + E W VT+VS DMR W APEKADI+VSELLGSF DNELSPECL
Sbjct: 392 EKNPNAVVTLENW-QFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECL 450
Query: 170 DGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEAISFSSKCALALQV 229
DGAQ FLK DG+SIP YTSF+ P+++SKL+N+V C +
Sbjct: 451 DGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRAC---------------------RE 489
Query: 230 KSHKDVVHFETAYVVKVHSVARLAPCEPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSS 289
K FE YVV++H+ +L+ +P FTF+HPN N RY L F + +T
Sbjct: 490 KDRDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 290 MVHGIFVSFLFR------------------FAIFFPLRTPVCIRPGSPLEVHFWRCCGST 331
G F + L++ F I FP++ P+ +R G + V FWRC S
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 332 KVWYEWCVASPNPSPVHNSNGRSYWVGL 359
KVWYEW V +P S +HN GRSY +GL
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTIGL 637
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 201/388 (51%), Gaps = 84/388 (21%)
Query: 8 ERFELSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDS 67
E F Y D+LQSPLQ PL DNLE+QTYE FEKD
Sbjct: 318 EXFAKGYEDYLQSPLQ--------------------------PLXDNLESQTYEVFEKDP 351
Query: 68 VKYIQYQRAIGNALVDRVPDXXXXXXXXXXXXXG------------------RKLKIYAV 109
VKY QYQ+A+ L+DRVP+ G RK+K+YAV
Sbjct: 352 VKYSQYQQAVYKCLLDRVPEEEKETNIQILXVLGAGRGPLVNASLRAAKQAERKIKVYAV 411
Query: 110 EKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNELSPECL 169
EKNPNAV+TL R E W VT+VS D R W APEKADI+VSELLGSFGDNELSPECL
Sbjct: 412 EKNPNAVITLEGW-RYEEWGSQVTVVSGDXREWKAPEKADIIVSELLGSFGDNELSPECL 470
Query: 170 DGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEAISFSSKCALALQV 229
DGAQ FLK DG+SIP YTS++ P+++SKL+N+V C +
Sbjct: 471 DGAQHFLKDDGVSIPGEYTSYLAPISSSKLYNEVRAC---------------------RE 509
Query: 230 KSHKDVVHFETAYVVKVHSVARLAPCEPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSS 289
K FE YVV++H+ +L+ P FTF HPN N RY L++ + +T
Sbjct: 510 KDRDPEAQFEXPYVVRLHNFHQLSDPLPCFTFHHPNKDDVIDNNRYCCLQYRVDLNTVLH 569
Query: 290 MVHGIFVSFLFR------------------FAIFFPLRTPVCIRPGSPLEVHFWRCCGST 331
G F + L++ F I FP++ P+ R G + V FWRC
Sbjct: 570 GFAGYFNTVLYKDVTLSICPESHSPGXFSWFPILFPIKQPIPXREGDTVCVRFWRCNNGK 629
Query: 332 KVWYEWCVASPNPSPVHNSNGRSYWVGL 359
KVWYEW V SP S +HN GRSY +GL
Sbjct: 630 KVWYEWAVTSPVCSAIHNPTGRSYTIGL 657
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 178/410 (43%), Gaps = 91/410 (22%)
Query: 12 LSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYI 71
+ Y+D LQ+PLQ PL +NL++ Y TFE+D +KY
Sbjct: 357 IEYKDVLQAPLQ--------------------------PLSENLDSGVYNTFEQDQIKYD 390
Query: 72 QYQRAIGNALVDRVPDXXXXXXXXXXXXXGR-------------------------KLKI 106
Y A+ AL D D GR K+K+
Sbjct: 391 VYGEAVVGALKDLGADGRKTVVIYLLGG-GRGPIGTKILKSEREYNNTFRQGQESLKVKL 449
Query: 107 YAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP------EKADILVSELLGSFG 160
Y VEKNPNA+VTL + + W++ VTI+ DMR E+ DI+VSELLGSFG
Sbjct: 450 YIVEKNPNAIVTLKYM-NVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFG 508
Query: 161 DNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDV----IPCLCAQV-SPLE 215
DNELSPECLDG FLK ISIP YTS+++P+ ++ +H + IP L + S
Sbjct: 509 DNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGR 568
Query: 216 AISFSSKCALALQVKSHKDVV-HFETAYVVKVHSVARLA-PCEPVFTFTHPNFSTKKSNQ 273
+ + +Q V + + YVV + LA +PVFTF HPNF SN+
Sbjct: 569 GEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNF-MNSSNE 627
Query: 274 RYKKLRFEIPSDTGSSMVHGIFVSFLFR------------------FAIFFPLRTPVCIR 315
R + F + + G F L++ F PLR + +
Sbjct: 628 RSDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVG 687
Query: 316 PGSPLEVHFWRCCGSTKVWYEWCVASPN------PSPVHNSNGRSYWVGL 359
G + + R +T VWYEW V +P+ N NG SY++ +
Sbjct: 688 EGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYYMRM 737
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 174/412 (42%), Gaps = 101/412 (24%)
Query: 12 LSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYI 71
+ Y+D LQ+PLQ PL +NL++ Y TFE+D +KY
Sbjct: 357 IEYKDVLQAPLQ--------------------------PLSENLDSGVYNTFEQDQIKYD 390
Query: 72 QYQRAIGNALVDRVPDXXXXXXXXXXXXXGR-------------------------KLKI 106
Y A+ AL D D GR K+K+
Sbjct: 391 VYGEAVVGALKDLGADGRKTVVIYLLGG-GRGPIGTKILKSEREYNNTFRQGQESLKVKL 449
Query: 107 YAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP------EKADILVSELLGSFG 160
Y VEKNPNA+VTL + W++ VTI+ D R E+ DI+VSELLGSFG
Sbjct: 450 YIVEKNPNAIVTL-KYXNVRTWKRRVTIIESDXRSLPGIAKDRGFEQPDIIVSELLGSFG 508
Query: 161 DNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDV----IPCLCAQVSP--- 213
DNELSPECLDG FLK ISIP YTS+++P+ ++ +H + IP L +
Sbjct: 509 DNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIXSTHIHQTIKAQSIPYLSRAIPSHGR 568
Query: 214 ----LEAISFSSKCALALQVKSHKDVVHFETAYVVKVHSVARLA-PCEPVFTFTHPNFST 268
L+ + V+++ D + YVV + LA +PVFTF HPNF
Sbjct: 569 GEPELDEDEXWIQKYPQGHVRNNXDQI-----YVVYLSKYIPLAETTKPVFTFEHPNFXN 623
Query: 269 KKSNQRYKKLRFEIPSDTGSSMVHGIFVSFLFR------------------FAIFFPLRT 310
SN+R + F + G F L++ F PLR
Sbjct: 624 -SSNERSDSIEFVXDRNADLXGFAGYFDLQLYKTVXLSIEPSTHTPGXVSWFPAVIPLRD 682
Query: 311 PVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPN------PSPVHNSNGRSYW 356
+ + G + + R +T VWYEW V +P+ N NG SY+
Sbjct: 683 QLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYY 734
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLG-SFGDNE 163
++YAVE + +VR G E V ++ + + PE+ D +VSE +G
Sbjct: 108 RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHES 166
Query: 164 LSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
+ L ++LK+ G+ +P+S FI P++ L
Sbjct: 167 MLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLE 203
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNE- 163
K+YAVE A +LV+ + V ++ + PEK D+++SE +G F E
Sbjct: 88 KVYAVEATKMAD-HARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRES 146
Query: 164 LSPECLDGAQRFLKQDGISIPSSYTSFIQPVT---ASKLHND 202
+ + R+LK G+ PS ++ P+ A + ND
Sbjct: 147 MFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRND 188
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNEL 164
KIYAVE + A LV+ + ++ + PE+ DI++SE +G NE
Sbjct: 66 KIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 124
Query: 165 SPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
E A+++LK G P+ + P T +L+
Sbjct: 125 MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 160
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNEL 164
KIYAVE + A LV+ + ++ + PE+ DI++SE +G NE
Sbjct: 75 KIYAVEASTMAQ-HAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 133
Query: 165 SPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
E A+++LK G P+ + P T +L+
Sbjct: 134 MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 169
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNEL 164
KIYAVE + A LV+ + ++ + PE+ DI++SE +G NE
Sbjct: 71 KIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 129
Query: 165 SPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
E A+++LK G P+ + P T +L+
Sbjct: 130 MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 165
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNEL 164
KIYAVE + A LV+ + ++ + PE+ DI++SE +G NE
Sbjct: 70 KIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 128
Query: 165 SPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
E A+++LK G P+ + P T +L+
Sbjct: 129 MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 164
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNEL 164
KIYAVE + A LV+ + ++ + PE+ DI++SE +G NE
Sbjct: 183 KIYAVEASTMAQ-HAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 241
Query: 165 SPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200
E A+++LK G P+ + P T +L+
Sbjct: 242 MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 277
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 101 GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKA----DILVSELL 156
GR ++YA+++NP A+ T ++ G VT+ DAPE DI ++ +
Sbjct: 53 GRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXE-----GDAPEALCKIPDIDIAVVG 107
Query: 157 GSFGD 161
GS G+
Sbjct: 108 GSGGE 112
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 122 LVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSFGDNE-LSPECLDGAQRFLKQD 179
++RL E T+T++ + P EK D+++SE +G F E + L ++L +
Sbjct: 105 IIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 164
Query: 180 GISIPSSYTSFIQPVTASKLHNDVIP 205
G P T + V+ H D I
Sbjct: 165 GSVYPDICTISLVAVSDVNKHADRIA 190
>pdb|3CGH|A Chain A, Crystal Structure Of A Susd Homolog (Bt_3984) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 516
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 170 DGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEA 216
D ++ FLK D I IP+ Y++ Q S+ ND +P AQV + A
Sbjct: 76 DWSRVFLKSDKI-IPTLYSNLTQVKLVSQNTNDPVPYAIAQVIKVAA 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,597,545
Number of Sequences: 62578
Number of extensions: 419841
Number of successful extensions: 859
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 19
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)