Query 039233
Match_columns 359
No_of_seqs 281 out of 1429
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0822 Protein kinase inhibit 100.0 6.4E-90 1.4E-94 683.3 22.3 303 1-359 302-649 (649)
2 PF05185 PRMT5: PRMT5 arginine 100.0 1.1E-83 2.3E-88 650.7 21.5 286 1-341 120-448 (448)
3 PTZ00357 methyltransferase; Pr 100.0 1.4E-72 3E-77 571.3 22.7 313 1-359 613-1072(1072)
4 KOG1499 Protein arginine N-met 100.0 5.9E-47 1.3E-51 364.8 20.6 251 57-330 32-317 (346)
5 KOG1500 Protein arginine N-met 100.0 3.2E-43 7E-48 334.8 14.0 248 61-325 153-432 (517)
6 KOG1501 Arginine N-methyltrans 99.9 2.1E-24 4.5E-29 211.9 11.8 273 54-341 29-352 (636)
7 COG4076 Predicted RNA methylas 99.7 3.7E-18 8.1E-23 152.3 5.7 132 62-197 13-146 (252)
8 PF12847 Methyltransf_18: Meth 99.4 9E-13 2E-17 107.8 7.0 100 83-183 3-108 (112)
9 PF06325 PrmA: Ribosomal prote 99.3 1.3E-12 2.9E-17 126.3 6.9 110 69-187 147-260 (295)
10 PF05175 MTS: Methyltransferas 99.3 7.9E-12 1.7E-16 111.3 9.0 100 82-182 32-136 (170)
11 TIGR00138 gidB 16S rRNA methyl 99.3 1.2E-11 2.7E-16 111.5 9.5 95 83-184 44-140 (181)
12 PRK00107 gidB 16S rRNA methylt 99.3 4E-11 8.7E-16 108.9 11.8 110 69-185 25-144 (187)
13 COG2264 PrmA Ribosomal protein 99.2 2.9E-11 6.2E-16 116.6 9.5 110 71-186 150-263 (300)
14 COG2242 CobL Precorrin-6B meth 99.2 7.9E-11 1.7E-15 106.0 11.1 121 61-188 7-137 (187)
15 PF13847 Methyltransf_31: Meth 99.2 5.8E-11 1.3E-15 103.2 9.0 103 83-188 5-112 (152)
16 TIGR00477 tehB tellurite resis 99.2 5.3E-11 1.1E-15 108.4 8.7 105 75-183 20-130 (195)
17 PRK15451 tRNA cmo(5)U34 methyl 99.1 2.1E-10 4.7E-15 108.0 10.7 127 59-186 27-164 (247)
18 PF13659 Methyltransf_26: Meth 99.1 7E-11 1.5E-15 97.5 6.2 98 84-182 3-111 (117)
19 TIGR02752 MenG_heptapren 2-hep 99.1 7.6E-10 1.6E-14 102.4 13.4 113 68-183 28-148 (231)
20 PRK11207 tellurite resistance 99.1 2.1E-10 4.5E-15 104.6 9.3 97 83-182 32-130 (197)
21 TIGR00406 prmA ribosomal prote 99.1 4.3E-10 9.4E-15 108.4 11.3 107 73-186 149-259 (288)
22 PF02353 CMAS: Mycolic acid cy 99.1 4.4E-10 9.5E-15 107.8 9.6 101 83-188 64-168 (273)
23 PF03848 TehB: Tellurite resis 99.1 3.7E-10 8.1E-15 102.8 7.9 97 83-183 32-130 (192)
24 TIGR03533 L3_gln_methyl protei 99.1 8.6E-10 1.9E-14 106.3 10.9 101 83-183 123-248 (284)
25 COG2230 Cfa Cyclopropane fatty 99.1 1.5E-09 3.2E-14 104.0 12.2 106 84-194 75-184 (283)
26 PRK11036 putative S-adenosyl-L 99.1 8.2E-10 1.8E-14 104.3 10.5 115 65-183 22-146 (255)
27 PRK12335 tellurite resistance 99.1 8.2E-10 1.8E-14 106.3 10.4 96 83-182 122-219 (287)
28 PRK00517 prmA ribosomal protei 99.0 1.3E-09 2.7E-14 103.0 10.9 99 74-185 110-212 (250)
29 PLN02396 hexaprenyldihydroxybe 99.0 9.5E-10 2.1E-14 107.8 10.2 97 84-185 134-234 (322)
30 PF01209 Ubie_methyltran: ubiE 99.0 4.5E-10 9.9E-15 105.3 7.6 108 71-183 33-150 (233)
31 PRK11805 N5-glutamine S-adenos 99.0 7.5E-10 1.6E-14 107.9 9.2 101 83-183 135-260 (307)
32 PRK08287 cobalt-precorrin-6Y C 99.0 1.7E-09 3.6E-14 97.4 10.7 95 83-184 33-129 (187)
33 PRK00377 cbiT cobalt-precorrin 99.0 1.4E-09 3.1E-14 99.0 10.3 96 83-183 42-142 (198)
34 COG4123 Predicted O-methyltran 99.0 6.9E-10 1.5E-14 104.5 8.2 99 83-182 46-166 (248)
35 smart00828 PKS_MT Methyltransf 99.0 1.1E-09 2.5E-14 100.7 9.4 97 84-184 2-102 (224)
36 PF02475 Met_10: Met-10+ like- 99.0 1.1E-09 2.4E-14 100.5 8.8 103 73-182 91-198 (200)
37 PLN02233 ubiquinone biosynthes 99.0 4E-09 8.7E-14 100.4 13.0 114 70-185 58-181 (261)
38 PRK14967 putative methyltransf 99.0 1.7E-09 3.6E-14 100.3 9.1 97 83-183 38-156 (223)
39 PLN02244 tocopherol O-methyltr 99.0 6.4E-09 1.4E-13 102.6 13.5 97 83-184 120-221 (340)
40 TIGR00536 hemK_fam HemK family 99.0 1.9E-09 4.1E-14 103.8 9.4 101 83-183 116-241 (284)
41 PRK15001 SAM-dependent 23S rib 99.0 1.8E-09 3.9E-14 107.9 9.6 100 83-182 230-336 (378)
42 TIGR02469 CbiT precorrin-6Y C5 99.0 4E-09 8.7E-14 87.1 10.2 98 83-187 21-123 (124)
43 COG2226 UbiE Methylase involve 99.0 3.8E-09 8.2E-14 99.3 11.1 106 71-181 37-151 (238)
44 PRK13944 protein-L-isoaspartat 99.0 3.4E-09 7.5E-14 97.2 10.2 92 83-182 74-169 (205)
45 PRK11873 arsM arsenite S-adeno 99.0 3.5E-09 7.6E-14 100.7 10.5 100 83-185 79-182 (272)
46 PRK04457 spermidine synthase; 99.0 4.5E-09 9.7E-14 100.2 11.0 158 13-184 5-175 (262)
47 PF05401 NodS: Nodulation prot 99.0 1.2E-09 2.6E-14 99.3 6.7 96 84-186 46-146 (201)
48 TIGR00740 methyltransferase, p 99.0 4.2E-09 9.2E-14 98.4 10.5 102 84-186 56-161 (239)
49 PRK11783 rlmL 23S rRNA m(2)G24 98.9 3.3E-09 7.1E-14 114.0 9.7 111 74-186 530-656 (702)
50 PRK15128 23S rRNA m(5)C1962 me 98.9 6E-09 1.3E-13 104.9 10.6 108 83-192 222-345 (396)
51 TIGR00537 hemK_rel_arch HemK-r 98.9 6.8E-09 1.5E-13 92.8 9.8 96 83-183 21-137 (179)
52 PF13649 Methyltransf_25: Meth 98.9 1.3E-09 2.8E-14 88.3 3.9 93 85-180 1-101 (101)
53 PLN02781 Probable caffeoyl-CoA 98.9 1.2E-08 2.6E-13 95.8 10.6 108 73-186 59-178 (234)
54 PRK01544 bifunctional N5-gluta 98.9 5.6E-09 1.2E-13 108.3 9.1 101 83-184 140-267 (506)
55 PF08241 Methyltransf_11: Meth 98.9 3.9E-09 8.4E-14 82.7 6.2 90 86-183 1-94 (95)
56 PRK13942 protein-L-isoaspartat 98.9 1.1E-08 2.3E-13 94.5 10.0 94 83-185 78-176 (212)
57 PRK15068 tRNA mo(5)U34 methylt 98.9 1.1E-08 2.3E-13 100.4 10.6 98 84-184 125-224 (322)
58 TIGR00080 pimt protein-L-isoas 98.9 5.5E-09 1.2E-13 96.3 8.1 92 83-183 79-174 (215)
59 PRK00121 trmB tRNA (guanine-N( 98.8 1.1E-08 2.5E-13 93.6 9.2 99 83-183 42-153 (202)
60 TIGR00452 methyltransferase, p 98.8 1.1E-08 2.4E-13 100.0 9.6 99 83-184 123-223 (314)
61 COG2520 Predicted methyltransf 98.8 1.1E-08 2.3E-13 100.7 9.4 93 83-182 190-285 (341)
62 COG2890 HemK Methylase of poly 98.8 9.5E-09 2.1E-13 99.0 8.8 142 24-183 65-235 (280)
63 PLN03075 nicotianamine synthas 98.8 1.4E-08 3E-13 98.2 9.9 103 83-186 125-233 (296)
64 PRK09489 rsmC 16S ribosomal RN 98.8 1.3E-08 2.9E-13 100.5 9.7 98 82-182 197-299 (342)
65 PHA03412 putative methyltransf 98.8 2.1E-08 4.6E-13 94.0 10.1 100 83-188 51-165 (241)
66 PRK07402 precorrin-6B methylas 98.8 4.3E-08 9.4E-13 88.9 11.4 96 83-185 42-141 (196)
67 PRK06922 hypothetical protein; 98.8 3.6E-08 7.9E-13 103.8 11.9 133 50-185 370-536 (677)
68 COG2227 UbiG 2-polyprenyl-3-me 98.8 7.5E-09 1.6E-13 96.5 6.1 98 84-188 62-163 (243)
69 PRK14103 trans-aconitate 2-met 98.8 2E-08 4.4E-13 94.8 8.2 91 83-183 31-123 (255)
70 PTZ00098 phosphoethanolamine N 98.8 3.6E-08 7.8E-13 93.9 9.8 119 60-184 24-154 (263)
71 TIGR02716 C20_methyl_CrtF C-20 98.8 3.7E-08 8.1E-13 95.5 10.0 101 83-186 151-254 (306)
72 TIGR03704 PrmC_rel_meth putati 98.8 4.8E-08 1E-12 92.6 10.3 96 84-183 89-213 (251)
73 PRK04266 fibrillarin; Provisio 98.7 3.6E-08 7.7E-13 92.2 9.2 92 83-182 74-172 (226)
74 TIGR00095 RNA methyltransferas 98.7 6.6E-08 1.4E-12 87.9 10.7 99 84-186 52-159 (189)
75 PRK00811 spermidine synthase; 98.7 4.5E-08 9.8E-13 94.3 10.1 104 83-187 78-192 (283)
76 PRK00216 ubiE ubiquinone/menaq 98.7 1E-07 2.2E-12 87.7 12.0 98 84-183 54-155 (239)
77 PRK01683 trans-aconitate 2-met 98.7 5.9E-08 1.3E-12 91.4 10.6 94 83-185 33-129 (258)
78 PRK14966 unknown domain/N5-glu 98.7 6.1E-08 1.3E-12 97.7 11.0 99 83-183 253-378 (423)
79 KOG2904 Predicted methyltransf 98.7 6.5E-08 1.4E-12 91.7 10.0 113 69-182 129-281 (328)
80 TIGR03534 RF_mod_PrmC protein- 98.7 8.1E-08 1.8E-12 89.5 10.7 99 84-183 90-214 (251)
81 PRK14968 putative methyltransf 98.7 6.5E-08 1.4E-12 86.0 8.8 99 83-183 25-145 (188)
82 PLN02476 O-methyltransferase 98.7 9.3E-08 2E-12 91.9 9.7 99 84-187 121-229 (278)
83 TIGR00091 tRNA (guanine-N(7)-) 98.7 8.8E-08 1.9E-12 87.1 9.1 99 83-183 18-129 (194)
84 PF08242 Methyltransf_12: Meth 98.7 4.6E-09 1E-13 84.4 0.5 93 86-182 1-99 (99)
85 TIGR01177 conserved hypothetic 98.7 6.4E-08 1.4E-12 95.0 8.6 96 83-181 184-289 (329)
86 PRK08317 hypothetical protein; 98.7 2.3E-07 5E-12 84.9 11.7 110 70-184 4-122 (241)
87 PRK09328 N5-glutamine S-adenos 98.7 9.5E-08 2.1E-12 90.6 9.4 99 84-183 111-235 (275)
88 TIGR03438 probable methyltrans 98.6 1.5E-07 3.2E-12 91.5 10.3 111 72-183 52-174 (301)
89 PLN02336 phosphoethanolamine N 98.6 1.2E-07 2.5E-12 97.4 10.2 96 84-185 269-368 (475)
90 TIGR02021 BchM-ChlM magnesium 98.6 1.6E-07 3.4E-12 86.5 10.0 96 83-183 57-155 (219)
91 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.1E-07 6.7E-12 83.6 11.4 108 71-183 25-140 (223)
92 smart00138 MeTrc Methyltransfe 98.6 4.6E-08 1E-12 93.4 6.2 123 63-186 73-242 (264)
93 PRK10909 rsmD 16S rRNA m(2)G96 98.6 1.4E-07 3E-12 86.6 8.8 98 83-185 55-158 (199)
94 TIGR02072 BioC biotin biosynth 98.6 1.6E-07 3.4E-12 86.3 9.2 93 84-183 37-132 (240)
95 PRK14902 16S rRNA methyltransf 98.6 1.8E-07 4E-12 95.5 10.4 100 83-183 252-376 (444)
96 cd02440 AdoMet_MTases S-adenos 98.6 2.2E-07 4.8E-12 72.0 8.5 99 84-185 1-103 (107)
97 COG2518 Pcm Protein-L-isoaspar 98.6 1.4E-07 3E-12 86.8 8.1 92 83-186 74-170 (209)
98 PLN02672 methionine S-methyltr 98.6 1.8E-07 3.9E-12 103.8 10.5 71 84-154 121-210 (1082)
99 PF01596 Methyltransf_3: O-met 98.6 1.5E-07 3.2E-12 86.8 8.3 100 83-187 47-156 (205)
100 PRK00312 pcm protein-L-isoaspa 98.6 3E-07 6.4E-12 84.4 10.0 90 83-183 80-172 (212)
101 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.8E-07 4E-12 92.3 8.7 94 83-183 115-212 (340)
102 COG4122 Predicted O-methyltran 98.6 3E-07 6.6E-12 85.4 9.6 113 72-189 49-169 (219)
103 PRK14901 16S rRNA methyltransf 98.6 3E-07 6.4E-12 93.7 10.4 105 83-188 254-386 (434)
104 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3E-07 6.5E-12 87.7 9.8 100 83-183 73-196 (264)
105 PRK11705 cyclopropane fatty ac 98.6 5.1E-07 1.1E-11 90.7 11.7 94 83-185 169-266 (383)
106 COG2263 Predicted RNA methylas 98.6 1.7E-07 3.7E-12 84.7 7.2 85 84-174 48-135 (198)
107 PRK11188 rrmJ 23S rRNA methylt 98.5 2E-07 4.4E-12 85.9 7.5 88 84-183 54-162 (209)
108 TIGR00417 speE spermidine synt 98.5 6.3E-07 1.4E-11 85.7 10.9 104 83-187 74-187 (270)
109 PLN02366 spermidine synthase 98.5 6.4E-07 1.4E-11 87.4 11.0 109 83-192 93-212 (308)
110 PRK13943 protein-L-isoaspartat 98.5 5.4E-07 1.2E-11 88.5 10.3 91 83-182 82-176 (322)
111 PRK10258 biotin biosynthesis p 98.5 2.4E-07 5.1E-12 87.1 7.4 90 84-183 45-137 (251)
112 PRK14904 16S rRNA methyltransf 98.5 4.2E-07 9.1E-12 92.9 9.8 105 83-188 252-379 (445)
113 PF01135 PCMT: Protein-L-isoas 98.5 1.6E-07 3.6E-12 86.7 6.1 92 83-183 74-169 (209)
114 PRK01581 speE spermidine synth 98.5 6E-07 1.3E-11 89.1 10.4 104 83-186 152-268 (374)
115 PRK04338 N(2),N(2)-dimethylgua 98.5 5.5E-07 1.2E-11 90.4 10.4 95 83-185 59-157 (382)
116 COG2519 GCD14 tRNA(1-methylade 98.5 6.2E-07 1.3E-11 84.4 9.9 93 83-182 96-191 (256)
117 PRK03612 spermidine synthase; 98.5 4.5E-07 9.7E-12 94.5 9.6 105 83-187 299-416 (521)
118 COG2813 RsmC 16S RNA G1207 met 98.5 5.1E-07 1.1E-11 87.1 9.1 115 63-181 138-261 (300)
119 TIGR00563 rsmB ribosomal RNA s 98.5 7.9E-07 1.7E-11 90.4 10.6 106 83-189 240-371 (426)
120 PLN02336 phosphoethanolamine N 98.5 3.4E-07 7.4E-12 94.0 7.8 98 83-185 39-141 (475)
121 PTZ00146 fibrillarin; Provisio 98.5 6.9E-07 1.5E-11 86.3 9.4 94 84-184 135-235 (293)
122 TIGR01983 UbiG ubiquinone bios 98.5 1E-06 2.2E-11 80.9 10.0 114 65-184 25-147 (224)
123 PLN02589 caffeoyl-CoA O-methyl 98.4 8.5E-07 1.8E-11 84.0 9.4 98 83-186 81-190 (247)
124 PRK10901 16S rRNA methyltransf 98.4 8.4E-07 1.8E-11 90.3 10.0 101 83-186 246-372 (427)
125 PRK14903 16S rRNA methyltransf 98.4 9.8E-07 2.1E-11 89.9 10.4 105 83-188 239-368 (431)
126 PHA03411 putative methyltransf 98.4 6.2E-07 1.3E-11 85.9 7.8 67 82-155 65-134 (279)
127 KOG1270 Methyltransferases [Co 98.4 2.2E-07 4.8E-12 87.7 4.2 93 84-183 92-192 (282)
128 PRK11088 rrmA 23S rRNA methylt 98.4 1.8E-06 3.8E-11 82.5 10.3 101 68-183 65-178 (272)
129 COG1092 Predicted SAM-dependen 98.4 7.3E-07 1.6E-11 89.5 7.7 109 83-193 219-343 (393)
130 PRK05134 bifunctional 3-demeth 98.4 1.3E-06 2.9E-11 80.9 8.9 95 84-185 51-150 (233)
131 PF10672 Methyltrans_SAM: S-ad 98.4 4.1E-07 8.9E-12 87.8 4.9 117 75-192 116-244 (286)
132 TIGR00438 rrmJ cell division p 98.3 2.4E-06 5.3E-11 76.9 9.3 113 59-183 3-143 (188)
133 PRK14121 tRNA (guanine-N(7)-)- 98.3 2.6E-06 5.7E-11 85.4 10.0 98 84-183 125-232 (390)
134 PRK07580 Mg-protoporphyrin IX 98.3 5.1E-06 1.1E-10 76.5 10.3 94 84-182 66-162 (230)
135 PRK03522 rumB 23S rRNA methylu 98.3 5.8E-06 1.3E-10 80.8 10.9 71 83-156 175-249 (315)
136 PF13489 Methyltransf_23: Meth 98.3 1.9E-06 4.2E-11 74.1 6.7 100 69-183 5-112 (161)
137 PF03602 Cons_hypoth95: Conser 98.3 1.8E-06 4E-11 78.2 6.7 99 84-186 45-153 (183)
138 KOG1271 Methyltransferases [Ge 98.3 2.8E-06 6.1E-11 76.5 7.6 105 83-188 69-183 (227)
139 KOG1540 Ubiquinone biosynthesi 98.3 5.7E-06 1.2E-10 78.0 9.9 96 84-183 103-211 (296)
140 TIGR03840 TMPT_Se_Te thiopurin 98.3 3.4E-06 7.4E-11 78.2 8.4 93 83-182 36-148 (213)
141 PF08704 GCD14: tRNA methyltra 98.3 3.7E-06 8E-11 79.6 8.8 93 83-182 42-142 (247)
142 PLN02585 magnesium protoporphy 98.3 6.1E-06 1.3E-10 80.9 10.6 93 84-183 147-247 (315)
143 PRK11727 23S rRNA mA1618 methy 98.2 2E-06 4.3E-11 84.4 6.9 71 84-155 117-197 (321)
144 TIGR02085 meth_trns_rumB 23S r 98.2 6.9E-06 1.5E-10 82.2 10.9 93 83-183 235-331 (374)
145 smart00650 rADc Ribosomal RNA 98.2 2.5E-06 5.5E-11 75.6 6.8 68 83-155 15-85 (169)
146 PTZ00338 dimethyladenosine tra 98.2 2.5E-06 5.4E-11 82.8 7.1 70 83-155 38-109 (294)
147 PRK13255 thiopurine S-methyltr 98.2 3.7E-06 8E-11 78.2 7.6 94 83-181 39-150 (218)
148 PLN02823 spermine synthase 98.2 9.1E-06 2E-10 80.3 10.6 101 84-185 106-219 (336)
149 TIGR03587 Pse_Me-ase pseudamin 98.2 5.2E-06 1.1E-10 76.3 8.0 87 83-176 45-134 (204)
150 COG4106 Tam Trans-aconitate me 98.2 3.1E-06 6.7E-11 78.0 6.2 91 83-182 32-125 (257)
151 PRK06202 hypothetical protein; 98.2 4.3E-06 9.3E-11 77.7 7.0 92 84-181 63-162 (232)
152 PRK05785 hypothetical protein; 98.2 1E-05 2.3E-10 75.4 9.5 86 83-180 53-141 (226)
153 PRK13168 rumA 23S rRNA m(5)U19 98.1 1.8E-05 3.8E-10 81.0 11.5 91 83-182 299-396 (443)
154 TIGR00479 rumA 23S rRNA (uraci 98.1 2.2E-05 4.7E-10 79.9 11.7 92 83-182 294-392 (431)
155 COG2521 Predicted archaeal met 98.1 1.9E-06 4.2E-11 80.2 3.4 112 69-185 116-244 (287)
156 KOG4300 Predicted methyltransf 98.1 9E-06 1.9E-10 74.6 7.6 109 70-183 57-179 (252)
157 PF12147 Methyltransf_20: Puta 98.1 2.1E-05 4.6E-10 75.6 9.9 102 84-185 138-248 (311)
158 PRK14896 ksgA 16S ribosomal RN 98.1 7.6E-06 1.7E-10 77.7 6.6 68 83-156 31-100 (258)
159 TIGR00308 TRM1 tRNA(guanine-26 98.1 1.3E-05 2.8E-10 80.4 8.4 94 84-185 47-146 (374)
160 PF08003 Methyltransf_9: Prote 98.0 3E-05 6.6E-10 75.1 10.0 112 81-195 114-234 (315)
161 PF01564 Spermine_synth: Sperm 98.0 1.9E-05 4.1E-10 74.7 8.3 102 84-186 79-191 (246)
162 PRK00274 ksgA 16S ribosomal RN 98.0 8.8E-06 1.9E-10 77.9 5.7 68 83-156 44-114 (272)
163 PF01170 UPF0020: Putative RNA 98.0 1.3E-05 2.7E-10 72.3 6.3 96 83-179 30-144 (179)
164 PF00891 Methyltransf_2: O-met 97.9 3.1E-05 6.8E-10 72.3 8.1 115 58-183 61-196 (241)
165 TIGR02081 metW methionine bios 97.9 4.5E-05 9.7E-10 69.0 8.1 91 83-185 15-111 (194)
166 KOG0820 Ribosomal RNA adenine 97.9 2.2E-05 4.9E-10 74.6 6.0 70 83-155 60-131 (315)
167 PF10294 Methyltransf_16: Puta 97.9 2.8E-05 6.1E-10 69.6 6.4 94 84-181 48-151 (173)
168 COG0421 SpeE Spermidine syntha 97.9 6.7E-05 1.4E-09 72.5 9.3 110 84-193 79-197 (282)
169 COG0742 N6-adenine-specific me 97.9 6.9E-05 1.5E-09 68.0 8.7 101 84-189 46-157 (187)
170 PRK11933 yebU rRNA (cytosine-C 97.8 7.4E-05 1.6E-09 77.0 9.8 105 83-188 115-244 (470)
171 TIGR02143 trmA_only tRNA (urac 97.8 9.3E-05 2E-09 73.6 10.1 84 84-174 200-302 (353)
172 PLN02232 ubiquinone biosynthes 97.8 6.6E-05 1.4E-09 66.2 7.6 75 107-183 1-78 (160)
173 PRK05031 tRNA (uracil-5-)-meth 97.8 0.00015 3.3E-09 72.3 10.4 84 83-173 208-310 (362)
174 PF02527 GidB: rRNA small subu 97.8 0.00011 2.3E-09 66.8 8.2 96 84-188 51-150 (184)
175 PF04816 DUF633: Family of unk 97.7 9.1E-05 2E-09 68.3 7.0 103 85-198 1-106 (205)
176 PF03059 NAS: Nicotianamine sy 97.7 0.00021 4.4E-09 68.8 9.6 116 68-185 97-229 (276)
177 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00024 5.2E-09 76.8 11.2 52 104-155 257-311 (702)
178 TIGR00755 ksgA dimethyladenosi 97.6 8.3E-05 1.8E-09 70.3 5.8 68 83-156 31-103 (253)
179 PF01739 CheR: CheR methyltran 97.6 8.1E-05 1.8E-09 68.2 5.4 125 62-187 4-176 (196)
180 KOG1663 O-methyltransferase [S 97.6 0.00033 7.2E-09 65.3 9.2 109 83-197 75-193 (237)
181 COG0030 KsgA Dimethyladenosine 97.6 0.00011 2.4E-09 70.0 6.0 69 83-156 32-104 (259)
182 KOG3191 Predicted N6-DNA-methy 97.6 0.00026 5.7E-09 63.8 7.9 108 84-200 46-175 (209)
183 PRK10611 chemotaxis methyltran 97.6 0.00013 2.7E-09 70.8 6.2 121 65-186 98-262 (287)
184 PF09445 Methyltransf_15: RNA 97.6 0.00012 2.5E-09 65.3 5.3 67 84-153 2-75 (163)
185 COG4976 Predicted methyltransf 97.5 1E-05 2.2E-10 75.3 -2.7 93 84-186 128-225 (287)
186 TIGR01444 fkbM_fam methyltrans 97.4 0.00032 6.8E-09 59.7 6.3 57 85-142 2-60 (143)
187 PF02390 Methyltransf_4: Putat 97.4 0.00077 1.7E-08 61.6 8.8 97 84-182 20-129 (195)
188 PRK13256 thiopurine S-methyltr 97.4 0.00053 1.1E-08 64.2 7.3 97 83-183 45-160 (226)
189 PF13578 Methyltransf_24: Meth 97.4 5.1E-05 1.1E-09 61.7 0.4 76 104-183 24-102 (106)
190 PF13679 Methyltransf_32: Meth 97.3 0.0016 3.4E-08 56.2 9.4 99 84-187 28-135 (141)
191 COG0116 Predicted N6-adenine-s 97.3 0.001 2.3E-08 66.4 9.3 50 106-155 257-307 (381)
192 COG0357 GidB Predicted S-adeno 97.3 0.00059 1.3E-08 63.4 6.9 106 69-183 46-165 (215)
193 COG1041 Predicted DNA modifica 97.3 0.00058 1.3E-08 67.4 7.2 95 84-181 200-305 (347)
194 PF06962 rRNA_methylase: Putat 97.3 0.0011 2.5E-08 57.5 8.1 84 105-189 1-95 (140)
195 PF08123 DOT1: Histone methyla 97.3 0.00052 1.1E-08 63.4 6.0 97 83-183 44-155 (205)
196 PF03291 Pox_MCEL: mRNA cappin 97.2 0.00079 1.7E-08 66.5 7.1 105 83-189 64-192 (331)
197 KOG2899 Predicted methyltransf 97.2 0.0013 2.8E-08 61.9 7.9 105 84-191 61-216 (288)
198 COG2265 TrmA SAM-dependent met 97.2 0.00088 1.9E-08 68.4 7.3 91 83-181 295-391 (432)
199 KOG1227 Putative methyltransfe 97.2 0.00025 5.5E-09 68.4 3.1 91 84-181 197-290 (351)
200 KOG3010 Methyltransferase [Gen 97.2 0.00026 5.6E-09 66.5 3.0 98 84-188 36-139 (261)
201 KOG2361 Predicted methyltransf 97.2 0.00044 9.6E-09 64.9 4.6 105 84-190 74-187 (264)
202 PF05971 Methyltransf_10: Prot 97.2 0.00086 1.9E-08 65.2 6.6 70 84-155 105-185 (299)
203 PF05724 TPMT: Thiopurine S-me 97.2 0.00077 1.7E-08 62.8 6.0 94 84-182 40-151 (218)
204 COG3897 Predicted methyltransf 97.1 0.00051 1.1E-08 62.7 4.4 89 84-181 82-173 (218)
205 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0015 3.3E-08 65.6 7.7 93 84-183 52-151 (377)
206 KOG3420 Predicted RNA methylas 97.1 0.00088 1.9E-08 58.5 4.9 91 61-154 14-121 (185)
207 PF00398 RrnaAD: Ribosomal RNA 97.0 0.00057 1.2E-08 65.1 4.1 79 73-156 18-106 (262)
208 PF05891 Methyltransf_PK: AdoM 97.0 0.00051 1.1E-08 63.7 3.4 97 84-184 58-159 (218)
209 PRK00050 16S rRNA m(4)C1402 me 97.0 0.001 2.2E-08 64.7 5.6 72 83-158 21-100 (296)
210 PRK04148 hypothetical protein; 97.0 0.0019 4.1E-08 55.7 6.6 85 76-174 7-100 (134)
211 PF05958 tRNA_U5-meth_tr: tRNA 97.0 0.0016 3.6E-08 64.7 7.0 56 84-142 199-256 (352)
212 PF05148 Methyltransf_8: Hypot 97.0 0.004 8.6E-08 57.6 8.6 106 58-185 29-157 (219)
213 TIGR00478 tly hemolysin TlyA f 96.9 0.0046 9.9E-08 58.0 9.0 46 72-118 62-113 (228)
214 PF07021 MetW: Methionine bios 96.9 0.003 6.5E-08 57.6 6.9 101 75-187 5-113 (193)
215 KOG1975 mRNA cap methyltransfe 96.8 0.0037 8E-08 61.1 7.3 98 84-183 120-234 (389)
216 PF04989 CmcI: Cephalosporin h 96.8 0.0036 7.9E-08 57.7 6.9 115 64-183 15-144 (206)
217 PF01728 FtsJ: FtsJ-like methy 96.8 0.00047 1E-08 61.5 0.8 88 84-183 26-136 (181)
218 COG1352 CheR Methylase of chem 96.7 0.0045 9.7E-08 59.5 7.3 121 62-183 70-238 (268)
219 PF01269 Fibrillarin: Fibrilla 96.7 0.013 2.9E-07 54.6 9.7 93 84-183 76-175 (229)
220 COG0293 FtsJ 23S rRNA methylas 96.6 0.0078 1.7E-07 55.5 7.5 88 84-183 48-156 (205)
221 KOG3045 Predicted RNA methylas 96.5 0.012 2.6E-07 56.1 8.6 110 59-197 138-268 (325)
222 TIGR03439 methyl_EasF probable 96.5 0.02 4.3E-07 56.4 10.6 111 71-183 64-194 (319)
223 PF02384 N6_Mtase: N-6 DNA Met 96.5 0.0041 9E-08 60.2 5.7 104 84-187 49-187 (311)
224 PRK10742 putative methyltransf 96.5 0.0078 1.7E-07 57.1 7.3 80 75-156 76-173 (250)
225 COG0144 Sun tRNA and rRNA cyto 96.5 0.0092 2E-07 59.5 8.1 107 83-190 158-292 (355)
226 COG2384 Predicted SAM-dependen 96.4 0.019 4.2E-07 53.4 9.1 113 75-198 8-125 (226)
227 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.4 0.0053 1.1E-07 59.3 5.7 106 83-189 87-222 (283)
228 COG0220 Predicted S-adenosylme 96.4 0.0088 1.9E-07 56.1 6.6 97 84-182 51-160 (227)
229 KOG2915 tRNA(1-methyladenosine 96.3 0.014 3.1E-07 55.9 7.9 138 32-181 52-204 (314)
230 PF05219 DREV: DREV methyltran 96.3 0.018 4E-07 54.8 8.3 84 84-183 97-185 (265)
231 PRK00536 speE spermidine synth 96.2 0.025 5.4E-07 54.2 8.9 100 83-193 74-178 (262)
232 PHA01634 hypothetical protein 96.1 0.0085 1.8E-07 51.3 4.7 69 84-160 31-102 (156)
233 COG3963 Phospholipid N-methylt 96.1 0.019 4.1E-07 51.4 6.9 97 85-188 52-158 (194)
234 COG0500 SmtA SAM-dependent met 96.1 0.06 1.3E-06 42.7 9.4 100 85-188 52-157 (257)
235 PF04672 Methyltransf_19: S-ad 96.1 0.028 6.1E-07 53.9 8.6 108 85-193 72-197 (267)
236 KOG1709 Guanidinoacetate methy 96.1 0.024 5.2E-07 52.7 7.7 117 70-199 83-213 (271)
237 KOG1661 Protein-L-isoaspartate 96.1 0.029 6.3E-07 52.0 8.2 103 84-194 85-205 (237)
238 KOG2730 Methylase [General fun 96.0 0.0072 1.6E-07 56.2 4.2 65 85-152 98-170 (263)
239 COG4262 Predicted spermidine s 96.0 0.022 4.8E-07 56.7 7.5 110 84-194 292-415 (508)
240 PRK01544 bifunctional N5-gluta 95.9 0.029 6.3E-07 58.6 8.7 97 84-182 350-458 (506)
241 TIGR02987 met_A_Alw26 type II 95.9 0.028 6E-07 58.8 8.5 71 84-155 34-120 (524)
242 COG1189 Predicted rRNA methyla 95.6 0.045 9.8E-07 51.5 7.6 98 74-183 68-175 (245)
243 KOG2187 tRNA uracil-5-methyltr 95.5 0.0055 1.2E-07 63.1 1.5 56 84-142 386-443 (534)
244 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.5 0.0096 2.1E-07 56.8 3.0 100 84-184 59-197 (256)
245 COG1867 TRM1 N2,N2-dimethylgua 95.1 0.056 1.2E-06 53.9 7.0 91 84-182 55-150 (380)
246 KOG1541 Predicted protein carb 95.1 0.025 5.3E-07 52.9 4.1 72 74-153 38-118 (270)
247 PF07091 FmrO: Ribosomal RNA m 94.8 0.045 9.6E-07 52.0 5.1 68 83-152 107-176 (251)
248 PF06080 DUF938: Protein of un 94.8 0.071 1.5E-06 49.2 6.2 118 85-203 29-161 (204)
249 COG1063 Tdh Threonine dehydrog 94.6 0.051 1.1E-06 53.9 5.1 118 51-183 138-266 (350)
250 KOG2940 Predicted methyltransf 94.6 0.076 1.6E-06 50.0 5.8 112 68-185 49-173 (325)
251 PF09243 Rsm22: Mitochondrial 94.5 0.22 4.8E-06 47.9 9.1 43 84-126 36-81 (274)
252 cd00315 Cyt_C5_DNA_methylase C 94.4 0.053 1.1E-06 52.1 4.5 61 85-153 3-68 (275)
253 KOG1253 tRNA methyltransferase 94.2 0.066 1.4E-06 55.1 5.0 93 93-191 124-221 (525)
254 KOG3178 Hydroxyindole-O-methyl 94.1 0.14 3E-06 50.8 6.9 93 85-188 181-278 (342)
255 PF11968 DUF3321: Putative met 94.1 0.027 5.9E-07 52.3 1.8 81 84-181 54-139 (219)
256 PRK11760 putative 23S rRNA C24 94.0 0.22 4.7E-06 49.6 8.1 80 84-179 214-296 (357)
257 COG1889 NOP1 Fibrillarin-like 94.0 0.18 3.8E-06 46.6 6.9 89 84-181 79-175 (231)
258 TIGR00006 S-adenosyl-methyltra 93.5 0.18 3.9E-06 49.4 6.5 68 84-154 23-99 (305)
259 KOG4589 Cell division protein 93.2 0.14 3.1E-06 46.8 4.9 89 83-183 71-181 (232)
260 PF07942 N2227: N2227-like pro 92.6 0.51 1.1E-05 45.5 8.0 95 84-183 59-199 (270)
261 PF00145 DNA_methylase: C-5 cy 92.3 0.18 4E-06 48.2 4.6 56 89-153 9-67 (335)
262 PF04445 SAM_MT: Putative SAM- 92.1 0.36 7.8E-06 45.5 6.1 72 83-156 77-160 (234)
263 KOG4058 Uncharacterized conser 91.9 0.22 4.7E-06 44.0 4.1 94 83-183 74-169 (199)
264 PRK09880 L-idonate 5-dehydroge 90.6 0.77 1.7E-05 44.8 7.1 89 83-184 171-264 (343)
265 KOG3201 Uncharacterized conser 90.6 0.22 4.7E-06 44.6 2.9 95 84-181 32-135 (201)
266 PF00107 ADH_zinc_N: Zinc-bind 90.2 0.47 1E-05 39.2 4.5 93 91-200 3-104 (130)
267 PF01555 N6_N4_Mtase: DNA meth 89.7 0.86 1.9E-05 41.0 6.2 49 71-121 179-231 (231)
268 PRK11524 putative methyltransf 89.3 0.75 1.6E-05 44.3 5.7 41 83-125 210-252 (284)
269 PRK09424 pntA NAD(P) transhydr 87.8 2.4 5.2E-05 44.5 8.6 92 84-186 167-285 (509)
270 KOG1122 tRNA and rRNA cytosine 87.8 1.3 2.9E-05 45.0 6.4 108 84-193 244-378 (460)
271 PF01861 DUF43: Protein of unk 87.7 3.6 7.9E-05 39.0 8.9 91 85-180 48-142 (243)
272 PRK13699 putative methylase; P 87.0 1.8 3.9E-05 40.5 6.6 55 69-125 149-207 (227)
273 KOG1596 Fibrillarin and relate 86.9 0.64 1.4E-05 44.2 3.4 93 84-183 159-258 (317)
274 KOG2352 Predicted spermine/spe 86.5 3.6 7.9E-05 42.6 8.8 96 84-182 51-157 (482)
275 TIGR03366 HpnZ_proposed putati 86.4 1.2 2.5E-05 42.3 5.0 90 83-185 122-217 (280)
276 cd08237 ribitol-5-phosphate_DH 86.3 2.6 5.6E-05 41.2 7.6 84 83-183 165-253 (341)
277 cd08239 THR_DH_like L-threonin 85.5 1.2 2.5E-05 43.1 4.7 88 83-183 165-259 (339)
278 PF02737 3HCDH_N: 3-hydroxyacy 85.5 1.1 2.5E-05 40.1 4.2 101 87-196 4-124 (180)
279 PRK01747 mnmC bifunctional tRN 85.3 2.5 5.5E-05 45.4 7.5 51 131-184 148-204 (662)
280 TIGR00675 dcm DNA-methyltransf 85.3 1.5 3.3E-05 42.9 5.3 57 89-153 7-65 (315)
281 TIGR01202 bchC 2-desacetyl-2-h 84.9 2.4 5.3E-05 40.8 6.5 79 83-183 146-228 (308)
282 KOG1099 SAM-dependent methyltr 84.5 0.71 1.5E-05 43.6 2.5 69 105-185 76-162 (294)
283 PF05050 Methyltransf_21: Meth 84.2 1.5 3.2E-05 37.4 4.3 42 98-139 18-61 (167)
284 COG0275 Predicted S-adenosylme 83.5 3.6 7.7E-05 40.3 6.9 56 97-154 42-103 (314)
285 COG0270 Dcm Site-specific DNA 83.2 1.7 3.6E-05 42.8 4.7 62 85-153 6-73 (328)
286 cd08281 liver_ADH_like1 Zinc-d 82.8 1.3 2.9E-05 43.6 3.9 87 83-185 193-289 (371)
287 PF03141 Methyltransf_29: Puta 80.3 1.7 3.6E-05 45.3 3.5 113 70-190 98-223 (506)
288 cd08283 FDH_like_1 Glutathione 80.2 2.3 4.9E-05 42.3 4.5 92 83-183 186-303 (386)
289 TIGR03451 mycoS_dep_FDH mycoth 79.8 1.9 4.1E-05 42.3 3.7 88 83-186 178-276 (358)
290 PF07279 DUF1442: Protein of u 78.8 9.3 0.0002 35.7 7.6 81 93-181 61-143 (218)
291 KOG2912 Predicted DNA methylas 78.0 2 4.3E-05 42.4 3.1 53 85-139 106-162 (419)
292 COG1064 AdhP Zn-dependent alco 78.0 7.7 0.00017 38.6 7.3 88 84-188 169-261 (339)
293 KOG0024 Sorbitol dehydrogenase 77.4 12 0.00026 37.2 8.2 91 83-187 171-274 (354)
294 PRK10309 galactitol-1-phosphat 76.8 4 8.8E-05 39.6 5.0 87 83-184 162-258 (347)
295 PRK06035 3-hydroxyacyl-CoA deh 76.0 4 8.7E-05 39.1 4.7 90 85-183 6-118 (291)
296 TIGR02819 fdhA_non_GSH formald 74.6 4.2 9.2E-05 40.9 4.6 93 83-184 187-297 (393)
297 PRK07819 3-hydroxybutyryl-CoA 74.2 6.5 0.00014 37.9 5.6 100 84-192 7-127 (286)
298 PF01795 Methyltransf_5: MraW 73.6 5.9 0.00013 39.0 5.1 49 104-154 45-100 (310)
299 PLN02740 Alcohol dehydrogenase 73.3 10 0.00022 37.7 6.9 85 83-184 200-298 (381)
300 cd08254 hydroxyacyl_CoA_DH 6-h 72.8 10 0.00022 36.0 6.6 87 83-183 167-260 (338)
301 COG0286 HsdM Type I restrictio 72.2 8.7 0.00019 40.1 6.3 72 84-155 189-272 (489)
302 PRK05808 3-hydroxybutyryl-CoA 71.5 20 0.00044 34.1 8.3 95 85-188 6-120 (282)
303 TIGR02822 adh_fam_2 zinc-bindi 70.8 17 0.00038 35.2 7.8 82 83-184 167-252 (329)
304 cd08278 benzyl_alcohol_DH Benz 70.6 4.2 9.2E-05 40.0 3.5 83 84-183 189-282 (365)
305 cd05188 MDR Medium chain reduc 70.5 6.9 0.00015 35.6 4.7 83 84-183 137-229 (271)
306 PRK07530 3-hydroxybutyryl-CoA 70.5 24 0.00051 33.8 8.5 91 85-184 7-117 (292)
307 COG4798 Predicted methyltransf 69.1 8.6 0.00019 35.6 4.7 99 84-183 51-163 (238)
308 cd08230 glucose_DH Glucose deh 68.8 14 0.00031 35.9 6.8 88 83-185 174-268 (355)
309 KOG1269 SAM-dependent methyltr 68.7 12 0.00027 37.6 6.3 100 84-187 113-216 (364)
310 PRK13699 putative methylase; P 66.8 4.6 9.9E-05 37.7 2.6 52 132-183 2-69 (227)
311 cd08232 idonate-5-DH L-idonate 66.1 18 0.00039 34.7 6.8 84 84-183 168-259 (339)
312 cd08285 NADP_ADH NADP(H)-depen 66.0 7.1 0.00015 37.9 4.0 84 84-183 169-263 (351)
313 KOG2651 rRNA adenine N-6-methy 66.0 12 0.00027 37.9 5.5 38 84-123 156-196 (476)
314 PRK10458 DNA cytosine methylas 65.6 14 0.00031 38.3 6.2 56 84-143 90-147 (467)
315 PF02153 PDH: Prephenate dehyd 65.6 17 0.00038 34.3 6.4 74 94-183 2-76 (258)
316 PRK08293 3-hydroxybutyryl-CoA 64.6 20 0.00043 34.3 6.7 90 85-182 6-116 (287)
317 cd05278 FDH_like Formaldehyde 64.2 8.9 0.00019 36.8 4.2 84 84-183 170-264 (347)
318 PRK06274 indolepyruvate oxidor 64.0 37 0.00081 30.5 8.0 73 93-186 22-96 (197)
319 KOG2078 tRNA modification enzy 63.9 4.4 9.6E-05 41.5 2.0 57 84-142 252-311 (495)
320 PRK08338 2-oxoglutarate ferred 63.9 40 0.00087 29.8 8.0 73 93-186 20-93 (170)
321 cd00401 AdoHcyase S-adenosyl-L 63.5 19 0.0004 36.9 6.5 81 84-186 204-289 (413)
322 PLN02827 Alcohol dehydrogenase 62.8 18 0.0004 35.9 6.2 84 83-183 195-292 (378)
323 TIGR02356 adenyl_thiF thiazole 62.7 25 0.00054 32.0 6.6 73 80-153 18-117 (202)
324 cd08233 butanediol_DH_like (2R 62.5 9.6 0.00021 37.0 4.1 87 84-183 175-269 (351)
325 PLN02545 3-hydroxybutyryl-CoA 62.4 16 0.00034 35.0 5.6 90 85-183 7-116 (295)
326 cd08234 threonine_DH_like L-th 62.2 26 0.00057 33.3 7.1 85 83-183 161-254 (334)
327 PF03712 Cu2_monoox_C: Copper 62.0 5.8 0.00013 34.9 2.2 26 303-328 78-103 (156)
328 TIGR02818 adh_III_F_hyde S-(hy 61.6 24 0.00052 34.8 6.8 87 83-183 187-284 (368)
329 cd08240 6_hydroxyhexanoate_dh_ 60.7 12 0.00026 36.2 4.5 84 84-183 178-271 (350)
330 PF01558 POR: Pyruvate ferredo 58.8 21 0.00046 31.3 5.4 74 93-187 12-87 (173)
331 PF05430 Methyltransf_30: S-ad 58.7 7 0.00015 33.2 2.1 51 131-184 32-88 (124)
332 COG3129 Predicted SAM-dependen 58.6 8.6 0.00019 36.6 2.8 68 85-154 82-160 (292)
333 PF02719 Polysacc_synt_2: Poly 58.5 14 0.00031 36.1 4.4 64 89-153 6-83 (293)
334 cd08236 sugar_DH NAD(P)-depend 58.3 16 0.00034 35.1 4.8 85 84-184 162-256 (343)
335 cd08261 Zn_ADH7 Alcohol dehydr 58.1 12 0.00027 35.9 4.0 86 84-183 162-255 (337)
336 cd08231 MDR_TM0436_like Hypoth 58.1 34 0.00073 33.3 7.1 87 84-183 180-277 (361)
337 KOG3987 Uncharacterized conser 58.0 2 4.4E-05 40.0 -1.4 85 84-183 115-204 (288)
338 cd08235 iditol_2_DH_like L-idi 57.7 13 0.00028 35.7 4.1 84 84-183 168-262 (343)
339 cd05285 sorbitol_DH Sorbitol d 57.2 17 0.00037 35.1 4.9 87 84-183 165-262 (343)
340 PRK08644 thiamine biosynthesis 57.2 32 0.00069 31.7 6.4 76 76-153 21-123 (212)
341 PF11899 DUF3419: Protein of u 57.1 12 0.00026 37.9 3.7 59 127-187 273-335 (380)
342 TIGR02437 FadB fatty oxidation 57.1 28 0.00062 38.1 6.9 100 87-195 318-437 (714)
343 PRK12475 thiamine/molybdopteri 56.9 29 0.00063 34.4 6.5 74 78-153 19-122 (338)
344 PRK11524 putative methyltransf 56.6 12 0.00027 35.9 3.7 52 132-183 9-77 (284)
345 TIGR02279 PaaC-3OHAcCoADH 3-hy 56.5 23 0.0005 37.1 5.9 95 85-188 8-122 (503)
346 KOG2671 Putative RNA methylase 56.2 5.9 0.00013 39.6 1.4 71 83-155 210-292 (421)
347 cd08277 liver_alcohol_DH_like 55.9 42 0.00091 32.9 7.4 88 83-184 186-284 (365)
348 cd05281 TDH Threonine dehydrog 55.5 24 0.00052 34.0 5.5 84 84-183 166-259 (341)
349 COG0863 DNA modification methy 54.1 34 0.00074 32.3 6.3 55 69-125 208-266 (302)
350 TIGR00027 mthyl_TIGR00027 meth 53.9 74 0.0016 30.3 8.5 116 67-183 64-194 (260)
351 cd08300 alcohol_DH_class_III c 53.7 48 0.001 32.5 7.4 84 83-183 188-285 (368)
352 PRK14029 pyruvate/ketoisovaler 53.4 82 0.0018 28.2 8.3 72 93-186 21-97 (185)
353 PRK05600 thiamine biosynthesis 53.1 71 0.0015 32.1 8.6 74 78-153 36-137 (370)
354 PRK08268 3-hydroxy-acyl-CoA de 53.1 31 0.00066 36.2 6.2 90 85-183 10-119 (507)
355 COG2213 MtlA Phosphotransferas 52.6 27 0.00059 35.5 5.3 46 105-153 381-430 (472)
356 cd05284 arabinose_DH_like D-ar 52.6 19 0.00042 34.4 4.4 84 84-183 170-263 (340)
357 COG1568 Predicted methyltransf 52.6 31 0.00066 33.8 5.5 71 95-177 167-241 (354)
358 cd05279 Zn_ADH1 Liver alcohol 52.4 22 0.00047 34.9 4.7 87 84-184 186-283 (365)
359 TIGR02175 PorC_KorC 2-oxoacid: 52.1 75 0.0016 28.2 7.8 73 93-186 21-97 (177)
360 cd08238 sorbose_phosphate_red 51.9 51 0.0011 33.1 7.4 91 83-182 177-284 (410)
361 KOG3924 Putative protein methy 51.6 31 0.00066 35.2 5.5 100 83-186 194-308 (419)
362 PRK09260 3-hydroxybutyryl-CoA 51.6 40 0.00087 32.1 6.3 91 85-183 4-114 (288)
363 KOG2920 Predicted methyltransf 51.2 10 0.00022 36.8 2.1 33 83-116 118-152 (282)
364 KOG0022 Alcohol dehydrogenase, 50.9 20 0.00042 35.7 4.0 28 94-122 209-236 (375)
365 cd08287 FDH_like_ADH3 formalde 50.8 23 0.00049 34.1 4.5 84 84-183 171-265 (345)
366 TIGR03334 IOR_beta indolepyruv 50.8 81 0.0018 28.3 7.8 73 93-186 20-93 (189)
367 cd08286 FDH_like_ADH2 formalde 50.6 24 0.00051 34.0 4.6 88 84-184 169-264 (345)
368 PRK03562 glutathione-regulated 50.5 48 0.001 35.7 7.3 61 83-153 401-470 (621)
369 TIGR03201 dearomat_had 6-hydro 50.3 55 0.0012 31.8 7.2 89 83-185 168-271 (349)
370 PRK11730 fadB multifunctional 50.3 30 0.00064 37.9 5.7 103 85-196 316-438 (715)
371 COG1062 AdhC Zn-dependent alco 50.2 20 0.00043 35.9 3.9 76 95-183 203-282 (366)
372 TIGR02441 fa_ox_alpha_mit fatt 49.7 36 0.00078 37.5 6.3 101 86-195 339-459 (737)
373 cd08293 PTGR2 Prostaglandin re 49.5 17 0.00036 35.0 3.4 84 83-183 156-251 (345)
374 TIGR00692 tdh L-threonine 3-de 49.5 23 0.00051 34.1 4.4 87 84-183 164-258 (340)
375 PRK06130 3-hydroxybutyryl-CoA 49.3 60 0.0013 31.2 7.2 91 85-183 7-112 (311)
376 PF11599 AviRa: RRNA methyltra 49.0 20 0.00042 33.8 3.5 41 84-124 54-98 (246)
377 COG0473 LeuB Isocitrate/isopro 48.7 13 0.00028 37.0 2.5 62 95-160 167-241 (348)
378 PF02254 TrkA_N: TrkA-N domain 48.2 43 0.00093 26.8 5.2 56 88-153 4-68 (116)
379 PRK07688 thiamine/molybdopteri 47.9 73 0.0016 31.6 7.7 69 83-153 25-122 (339)
380 PLN02586 probable cinnamyl alc 47.8 43 0.00094 32.9 6.1 83 83-183 185-275 (360)
381 cd01487 E1_ThiF_like E1_ThiF_l 47.6 58 0.0013 28.9 6.3 68 85-153 2-94 (174)
382 cd08301 alcohol_DH_plants Plan 47.6 62 0.0013 31.7 7.1 88 83-184 189-287 (369)
383 PF03446 NAD_binding_2: NAD bi 47.5 35 0.00076 29.7 4.8 81 88-185 7-93 (163)
384 COG3510 CmcI Cephalosporin hyd 47.3 68 0.0015 29.8 6.6 72 65-143 53-131 (237)
385 cd08256 Zn_ADH2 Alcohol dehydr 47.2 20 0.00044 34.6 3.6 84 84-183 177-271 (350)
386 cd01065 NAD_bind_Shikimate_DH 46.9 1E+02 0.0023 25.8 7.6 76 73-155 6-89 (155)
387 PRK05562 precorrin-2 dehydroge 46.9 34 0.00074 32.1 4.8 76 84-172 27-106 (223)
388 cd08291 ETR_like_1 2-enoyl thi 46.8 24 0.00052 33.8 4.0 79 88-184 151-240 (324)
389 cd08242 MDR_like Medium chain 46.4 88 0.0019 29.6 7.8 81 84-183 158-242 (319)
390 cd08265 Zn_ADH3 Alcohol dehydr 46.4 26 0.00056 34.7 4.2 87 84-183 206-304 (384)
391 cd00757 ThiF_MoeB_HesA_family 46.3 61 0.0013 29.9 6.5 74 83-158 22-121 (228)
392 KOG2793 Putative N2,N2-dimethy 46.2 60 0.0013 31.0 6.4 91 84-180 89-193 (248)
393 PRK11154 fadJ multifunctional 46.2 38 0.00082 37.0 5.8 102 85-195 312-434 (708)
394 COG1748 LYS9 Saccharopine dehy 46.2 29 0.00064 35.2 4.6 65 84-154 3-75 (389)
395 PRK07417 arogenate dehydrogena 45.0 46 0.001 31.6 5.6 78 88-182 6-87 (279)
396 cd08255 2-desacetyl-2-hydroxye 44.8 66 0.0014 29.7 6.6 84 84-183 100-187 (277)
397 PRK03659 glutathione-regulated 44.8 66 0.0014 34.4 7.2 61 83-153 401-470 (601)
398 PRK05597 molybdopterin biosynt 44.7 65 0.0014 32.1 6.8 73 80-153 25-124 (355)
399 PRK08534 pyruvate ferredoxin o 43.8 1.3E+02 0.0028 26.8 8.0 71 93-185 21-96 (181)
400 COG1255 Uncharacterized protei 43.8 50 0.0011 28.1 4.8 61 79-153 11-76 (129)
401 cd08263 Zn_ADH10 Alcohol dehyd 43.6 31 0.00068 33.7 4.3 84 84-183 190-284 (367)
402 PRK06853 indolepyruvate oxidor 43.4 1.4E+02 0.0031 26.8 8.3 71 93-186 23-97 (197)
403 COG0686 Ald Alanine dehydrogen 43.2 43 0.00093 33.3 5.0 81 93-183 183-265 (371)
404 PF03269 DUF268: Caenorhabditi 43.1 20 0.00043 32.2 2.5 92 93-199 15-118 (177)
405 PRK07502 cyclohexadienyl dehyd 43.0 78 0.0017 30.4 6.9 86 84-183 8-97 (307)
406 PRK08269 3-hydroxybutyryl-CoA 43.0 75 0.0016 31.1 6.8 86 89-182 2-111 (314)
407 PF02636 Methyltransf_28: Puta 42.7 27 0.00058 32.8 3.5 72 84-159 21-108 (252)
408 PLN02702 L-idonate 5-dehydroge 42.6 1.2E+02 0.0026 29.5 8.2 86 84-183 184-282 (364)
409 PRK11064 wecC UDP-N-acetyl-D-m 42.4 1.5E+02 0.0033 30.1 9.1 32 85-118 6-41 (415)
410 PRK07063 short chain dehydroge 42.3 1.1E+02 0.0024 27.9 7.6 60 93-154 23-93 (260)
411 cd08279 Zn_ADH_class_III Class 41.9 32 0.00069 33.6 4.1 84 84-183 185-279 (363)
412 PF06460 NSP13: Coronavirus NS 40.9 28 0.00062 33.6 3.3 103 67-182 42-165 (299)
413 PRK05396 tdh L-threonine 3-deh 40.4 41 0.00089 32.3 4.5 85 84-184 166-261 (341)
414 PRK08328 hypothetical protein; 40.4 1.2E+02 0.0026 28.2 7.5 69 84-153 29-124 (231)
415 KOG0784 Isocitrate dehydrogena 40.2 8.6 0.00019 38.2 -0.3 63 95-160 195-269 (375)
416 PRK10083 putative oxidoreducta 39.8 79 0.0017 30.2 6.4 88 83-183 162-256 (339)
417 PRK07454 short chain dehydroge 39.8 1.3E+02 0.0028 27.1 7.5 57 93-153 22-89 (241)
418 PRK08267 short chain dehydroge 38.1 1.2E+02 0.0026 27.7 7.1 56 93-154 17-84 (260)
419 PRK09496 trkA potassium transp 38.0 84 0.0018 31.7 6.5 62 84-153 233-303 (453)
420 TIGR02825 B4_12hDH leukotriene 37.5 47 0.001 31.7 4.4 85 83-183 140-234 (325)
421 PF06859 Bin3: Bicoid-interact 37.5 7.6 0.00017 32.4 -0.9 44 147-191 1-51 (110)
422 PRK05690 molybdopterin biosynt 37.3 1.4E+02 0.0031 28.0 7.5 73 80-153 29-128 (245)
423 cd01483 E1_enzyme_family Super 37.2 1.2E+02 0.0026 25.4 6.5 68 85-153 2-95 (143)
424 KOG1562 Spermidine synthase [A 37.1 85 0.0018 31.0 5.9 83 105-187 147-237 (337)
425 TIGR00936 ahcY adenosylhomocys 36.9 87 0.0019 32.0 6.3 82 84-187 197-283 (406)
426 PRK05854 short chain dehydroge 36.9 1.5E+02 0.0033 28.4 7.9 60 93-154 30-100 (313)
427 PRK08762 molybdopterin biosynt 36.5 1.2E+02 0.0025 30.4 7.2 69 84-153 137-231 (376)
428 TIGR00518 alaDH alanine dehydr 36.5 1E+02 0.0022 30.9 6.8 90 85-184 170-265 (370)
429 TIGR02354 thiF_fam2 thiamine b 36.0 1.3E+02 0.0028 27.4 6.8 70 83-153 22-116 (200)
430 cd08269 Zn_ADH9 Alcohol dehydr 35.9 54 0.0012 30.7 4.4 75 93-183 145-226 (312)
431 PF11899 DUF3419: Protein of u 35.8 35 0.00076 34.6 3.3 39 83-124 37-78 (380)
432 PRK07411 hypothetical protein; 35.5 1.4E+02 0.003 30.2 7.5 73 80-153 35-134 (390)
433 TIGR02440 FadJ fatty oxidation 35.1 1.1E+02 0.0023 33.5 7.1 102 85-195 307-429 (699)
434 cd08245 CAD Cinnamyl alcohol d 34.9 1.6E+02 0.0035 27.8 7.7 83 84-183 165-253 (330)
435 PRK15116 sulfur acceptor prote 34.9 2.5E+02 0.0053 27.0 8.8 73 84-158 32-131 (268)
436 cd08296 CAD_like Cinnamyl alco 34.9 56 0.0012 31.3 4.5 84 83-183 165-256 (333)
437 PRK04143 hypothetical protein; 34.6 50 0.0011 31.7 4.0 28 129-160 82-113 (264)
438 PLN02514 cinnamyl-alcohol dehy 34.6 1.6E+02 0.0035 28.7 7.7 86 84-184 183-273 (357)
439 cd08284 FDH_like_2 Glutathione 33.9 57 0.0012 31.2 4.4 83 84-183 170-263 (344)
440 COG0569 TrkA K+ transport syst 33.9 1.1E+02 0.0024 28.3 6.2 59 87-153 5-72 (225)
441 COG0078 ArgF Ornithine carbamo 33.6 98 0.0021 30.5 5.8 66 93-163 169-237 (310)
442 PF00106 adh_short: short chai 33.4 1.5E+02 0.0032 24.8 6.5 58 93-153 16-86 (167)
443 cd00755 YgdL_like Family of ac 33.4 1.8E+02 0.0039 27.2 7.5 74 83-158 12-112 (231)
444 PRK07878 molybdopterin biosynt 33.1 2.3E+02 0.005 28.5 8.7 74 79-153 38-138 (392)
445 PRK10669 putative cation:proto 32.9 78 0.0017 33.3 5.5 61 83-153 418-487 (558)
446 cd08294 leukotriene_B4_DH_like 32.8 49 0.0011 31.3 3.6 73 93-183 160-238 (329)
447 PRK06914 short chain dehydroge 32.6 1.5E+02 0.0033 27.4 6.9 60 93-154 19-88 (280)
448 PLN02178 cinnamyl-alcohol dehy 32.4 1.4E+02 0.0031 29.6 7.0 84 83-183 180-270 (375)
449 COG4822 CbiK Cobalamin biosynt 32.3 66 0.0014 30.3 4.2 104 10-135 70-199 (265)
450 PRK06194 hypothetical protein; 32.2 2E+02 0.0043 26.7 7.6 58 93-154 22-90 (287)
451 KOG2798 Putative trehalase [Ca 32.2 53 0.0012 32.6 3.7 35 147-184 259-294 (369)
452 PRK05476 S-adenosyl-L-homocyst 32.0 1.3E+02 0.0027 31.1 6.6 79 84-184 214-297 (425)
453 PRK08340 glucose-1-dehydrogena 32.0 1.6E+02 0.0035 26.9 6.9 57 93-154 16-83 (259)
454 PRK07066 3-hydroxybutyryl-CoA 31.9 81 0.0018 31.1 5.1 90 84-182 9-115 (321)
455 PRK08537 2-oxoglutarate ferred 31.6 2.6E+02 0.0057 24.5 7.9 31 146-186 66-96 (177)
456 COG1743 Adenine-specific DNA m 31.3 45 0.00097 36.9 3.3 35 88-124 99-133 (875)
457 KOG0821 Predicted ribosomal RN 30.1 54 0.0012 31.1 3.2 58 83-143 52-111 (326)
458 PTZ00142 6-phosphogluconate de 30.1 1.8E+02 0.0039 30.3 7.5 88 88-184 7-99 (470)
459 COG0062 Uncharacterized conser 29.9 3.8E+02 0.0082 24.8 8.8 93 93-189 68-165 (203)
460 cd08262 Zn_ADH8 Alcohol dehydr 29.7 2.2E+02 0.0048 27.1 7.7 84 84-183 164-261 (341)
461 TIGR02355 moeB molybdopterin s 29.5 1.5E+02 0.0033 27.8 6.3 69 84-153 26-120 (240)
462 PRK09291 short chain dehydroge 29.2 2.1E+02 0.0044 25.9 7.1 58 93-154 18-80 (257)
463 PRK07102 short chain dehydroge 29.1 2.1E+02 0.0045 25.8 7.1 59 93-154 17-83 (243)
464 PLN00123 isocitrate dehydrogen 29.0 97 0.0021 31.2 5.1 61 96-160 180-253 (360)
465 PRK09242 tropinone reductase; 29.0 2.8E+02 0.006 25.2 8.0 59 93-153 25-94 (257)
466 cd02904 Macro_H2A_like Macro d 28.8 1E+02 0.0022 28.1 4.7 63 128-194 16-102 (186)
467 PF07993 NAD_binding_4: Male s 28.7 73 0.0016 29.4 4.0 59 93-153 13-93 (249)
468 PRK03437 3-isopropylmalate deh 28.4 81 0.0018 31.5 4.4 62 95-160 171-245 (344)
469 PRK12549 shikimate 5-dehydroge 28.4 3.3E+02 0.0072 26.1 8.6 82 69-155 110-200 (284)
470 PRK12939 short chain dehydroge 28.4 2E+02 0.0043 25.8 6.8 58 93-154 23-91 (250)
471 PF03141 Methyltransf_29: Puta 28.3 1E+02 0.0023 32.4 5.3 123 58-189 334-470 (506)
472 TIGR03710 OAFO_sf 2-oxoacid:ac 28.1 2.8E+02 0.006 29.5 8.6 73 93-186 21-93 (562)
473 PRK09496 trkA potassium transp 28.1 2.9E+02 0.0063 27.8 8.5 60 85-153 3-71 (453)
474 PRK07231 fabG 3-ketoacyl-(acyl 27.9 1.8E+02 0.004 26.0 6.5 57 93-154 21-88 (251)
475 PRK08997 isocitrate dehydrogen 27.8 1.2E+02 0.0026 30.2 5.4 62 95-160 158-232 (334)
476 cd02900 Macro_Appr_pase Macro 27.5 1E+02 0.0022 28.0 4.5 41 107-153 2-48 (186)
477 PRK07062 short chain dehydroge 27.5 2.7E+02 0.0059 25.4 7.6 60 93-154 24-94 (265)
478 COG0604 Qor NADPH:quinone redu 27.4 1.5E+02 0.0033 29.0 6.1 90 83-187 144-242 (326)
479 PLN03154 putative allyl alcoho 27.1 58 0.0013 31.8 3.2 87 83-183 160-255 (348)
480 PRK05867 short chain dehydroge 27.0 2.3E+02 0.005 25.7 7.1 58 93-154 25-93 (253)
481 COG1250 FadB 3-hydroxyacyl-CoA 26.6 92 0.002 30.6 4.4 102 85-194 6-126 (307)
482 cd08295 double_bond_reductase_ 26.6 78 0.0017 30.4 3.9 83 83-183 153-248 (338)
483 PF01835 A2M_N: MG2 domain; I 26.6 1E+02 0.0023 24.1 4.0 20 305-325 3-22 (99)
484 COG0287 TyrA Prephenate dehydr 26.5 2E+02 0.0043 27.8 6.6 36 85-120 6-45 (279)
485 PLN03209 translocon at the inn 26.4 1.8E+02 0.0039 31.2 6.8 63 93-158 96-169 (576)
486 COG1086 Predicted nucleoside-d 26.3 2.6E+02 0.0057 30.0 7.8 96 55-153 223-331 (588)
487 COG2423 Predicted ornithine cy 26.3 2.2E+02 0.0047 28.4 6.9 85 64-153 103-201 (330)
488 PRK09222 isocitrate dehydrogen 26.1 1.1E+02 0.0024 32.0 5.0 62 95-160 160-234 (482)
489 cd01488 Uba3_RUB Ubiquitin act 26.0 2.4E+02 0.0052 27.5 7.1 72 85-158 2-98 (291)
490 PRK05844 pyruvate flavodoxin o 25.9 3.3E+02 0.0071 24.2 7.6 71 93-185 21-96 (186)
491 PRK06128 oxidoreductase; Provi 25.9 5.3E+02 0.011 24.3 9.5 59 93-155 71-142 (300)
492 PRK08223 hypothetical protein; 25.8 2.5E+02 0.0055 27.3 7.2 74 83-158 28-127 (287)
493 PF01488 Shikimate_DH: Shikima 25.1 1.5E+02 0.0032 24.9 5.0 64 84-153 14-81 (135)
494 TIGR01470 cysG_Nterm siroheme 25.1 1.4E+02 0.003 27.3 5.0 76 84-172 11-90 (205)
495 PRK06949 short chain dehydroge 25.1 3.2E+02 0.0068 24.7 7.5 58 93-154 25-93 (258)
496 PF03686 UPF0146: Uncharacteri 24.8 99 0.0022 26.5 3.7 83 74-174 5-93 (127)
497 PRK05875 short chain dehydroge 24.6 2.2E+02 0.0047 26.2 6.5 60 93-154 23-93 (276)
498 PRK07035 short chain dehydroge 24.6 3.4E+02 0.0074 24.4 7.7 58 93-154 24-92 (252)
499 cd08297 CAD3 Cinnamyl alcohol 24.5 99 0.0021 29.5 4.2 74 93-183 182-262 (341)
500 PRK06718 precorrin-2 dehydroge 24.4 1.4E+02 0.003 27.2 4.9 61 84-153 12-76 (202)
No 1
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.4e-90 Score=683.28 Aligned_cols=303 Identities=60% Similarity=0.983 Sum_probs=282.5
Q ss_pred CCCCcHHHHhhhcccccccCCCCCCCCCceeecccchhhhcccccCCCCCccccCcHHHHHHHhcCcccHHHHHHHHHHh
Q 039233 1 MDPLPEQERFELSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYIQYQRAIGNA 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~y~d~lq~pl~~~~~~~~~~~~~~~~~~~~~~~~~~qPl~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~ 80 (359)
+||.+..|.++.+|+||||+|| |||+|||+++|||+||+|++||.+|++||..|
T Consensus 302 ~~~~n~~eh~~~~Y~d~Lq~PL--------------------------QPLsdNLe~~TYetFEkD~VKY~~Yq~Ai~~A 355 (649)
T KOG0822|consen 302 GPPVNNSEHQLLSYKDYLQAPL--------------------------QPLSDNLENQTYETFEKDPVKYDQYQQAILKA 355 (649)
T ss_pred CCCCChHHHHHHhHHhhhhCCC--------------------------chhhhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 4778999999999999999999 99999999999999999999999999999999
Q ss_pred hcccCCcC-----------Chh--HH----HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 81 LVDRVPDE-----------EAS--SL----TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 81 ~~d~v~D~-----------g~G--tl----~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
+.|+|.|. |+| -| ..+|..+.+|+++|||||||+|+.+++.+.. ..|+++|++|.+|||+|.
T Consensus 356 L~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 356 LLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISSDMRKWN 434 (649)
T ss_pred HHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hhhcCeeEEEeccccccC
Confidence 98875443 333 23 3666777789999999999999999988544 579999999999999999
Q ss_pred CC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccchhhhhhhhcccccccCcchhhhhhhh
Q 039233 144 AP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEAISFSSK 222 (359)
Q Consensus 144 ~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l~~~~~~~~~~~~~~~~~~~fs~~ 222 (359)
.| +++||||||+|||||||||+|||||+|+++|||+||+||++||+|++||+|++||+++..
T Consensus 435 ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a----------------- 497 (649)
T KOG0822|consen 435 APREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKA----------------- 497 (649)
T ss_pred CchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHh-----------------
Confidence 88 999999999999999999999999999999999999999999999999999999999842
Q ss_pred hhhhhhhccccccccccceEEEEecCceecCCCceeEEeecCCCCccccccceEEEEEEeeeCCCCceeEEEEEee----
Q 039233 223 CALALQVKSHKDVVHFETAYVVKVHSVARLAPCEPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGIFVSF---- 298 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~pyV~~~~~~~~Ls~p~~~f~F~~~~~~~~~~~~r~~~l~F~i~~~g~~~~vhGfag~F---- 298 (359)
..+..+||+||||.+++++.|+++|++|+|.||+.+.+.+|+|++.++|++.++| .+|||||||
T Consensus 498 ---------~~~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~---~lHGFaGYFd~~L 565 (649)
T KOG0822|consen 498 ---------TNDPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNG---VLHGFAGYFDAVL 565 (649)
T ss_pred ---------cCCccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCc---eEeecchhhhhhh
Confidence 2345789999999999999999999999999999988999999999999999987 999999999
Q ss_pred -----------------cccceeeeecCCeEEecCCCeEEEEEEeeeCCCeEEEEEEEe------cCCCCccccCCCceE
Q 039233 299 -----------------LFRFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVA------SPNPSPVHNSNGRSY 355 (359)
Q Consensus 299 -----------------tsW~q~~fpl~~Pi~V~~G~~i~~~~~R~~~~~~VWyeW~~~------~p~~~~i~n~~G~~y 355 (359)
+||||++|||++|+.|..|++|+++||||+|+.||||||+++ +|..+++||++||+|
T Consensus 566 YkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~~kVWYEW~v~~~~~l~~~~~s~iHN~~Grsy 645 (649)
T KOG0822|consen 566 YKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDSTKVWYEWSVESFIYLMKPSSSEIHNPNGRSY 645 (649)
T ss_pred hheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCCceeEEEEEeeeeecccCCCcccccCCCCcee
Confidence 999999999999999999999999999999999999999999 799999999999999
Q ss_pred EecC
Q 039233 356 WVGL 359 (359)
Q Consensus 356 ~~~l 359 (359)
+|+|
T Consensus 646 ~~~l 649 (649)
T KOG0822|consen 646 SMRL 649 (649)
T ss_pred ecCC
Confidence 9997
No 2
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=1.1e-83 Score=650.72 Aligned_cols=286 Identities=55% Similarity=0.883 Sum_probs=231.0
Q ss_pred CCCCcHHHHhhhcccccccCCCCCCCCCceeecccchhhhcccccCCCCCccccCcHHHHHHHhcCcccHHHHHHHHHHh
Q 039233 1 MDPLPEQERFELSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYIQYQRAIGNA 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~y~d~lq~pl~~~~~~~~~~~~~~~~~~~~~~~~~~qPl~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~ 80 (359)
+|+++.+|+|+.+|+||||.|| |||+|||+|+|||+||+|++||++|++||.+|
T Consensus 120 ~~~~~~~~~~~~~~~d~Lq~PL--------------------------qPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~a 173 (448)
T PF05185_consen 120 QPPLDPQEKFESGYEDYLQAPL--------------------------QPLMDNLESQTYEVFEKDPVKYDQYERAIEEA 173 (448)
T ss_dssp -----------------EE------------------------------TTTS---HHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred CCCCChhhhhhhhchhhccCCC--------------------------CCchhhhccccHhhHhcCHHHHHHHHHHHHHH
Confidence 4788999999999999999999 99999999999999999999999999999999
Q ss_pred hccc------------CCcCChhH--HHHHHHHcCC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 81 LVDR------------VPDEEASS--LTTAAEETGR----KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 81 ~~d~------------v~D~g~Gt--l~~~A~~aga----~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
++|+ |+|+|||+ |+++|++||+ +.+|||||+|++|+.+++++++.|+|+++|+||++|||++
T Consensus 174 l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 174 LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 8652 78999998 9998888872 3499999999999999999988999999999999999999
Q ss_pred cCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccchhhhhhhhcccccccCcchhhhhhhh
Q 039233 143 DAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEAISFSSK 222 (359)
Q Consensus 143 ~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l~~~~~~~~~~~~~~~~~~~fs~~ 222 (359)
++|+||||||||||||||+||++||||++++|||||||++||++|++|++||+++++|+++..
T Consensus 254 ~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~----------------- 316 (448)
T PF05185_consen 254 ELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRN----------------- 316 (448)
T ss_dssp CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHH-----------------
T ss_pred CCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHh-----------------
Confidence 999999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhhhhhhccccccccccceEEEEecCceecCCC-ceeEEeecCCCCc--cccccceEEEEEEeeeCCCCceeEEEEEee-
Q 039233 223 CALALQVKSHKDVVHFETAYVVKVHSVARLAPC-EPVFTFTHPNFST--KKSNQRYKKLRFEIPSDTGSSMVHGIFVSF- 298 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~pyV~~~~~~~~Ls~p-~~~f~F~~~~~~~--~~~~~r~~~l~F~i~~~g~~~~vhGfag~F- 298 (359)
......+++|||+.+++...|+++ +++|+|+||+... +.+++|+..++|+++++| ++|||+|||
T Consensus 317 ---------~~~~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g---~vhGfagwFd 384 (448)
T PF05185_consen 317 ---------WWNPSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDG---VVHGFAGWFD 384 (448)
T ss_dssp ---------HHGHHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSE---EEEEEEEEEE
T ss_pred ---------hcchhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCc---EEEEEEEEEE
Confidence 011356899999999999999999 9999999999752 578899999999999887 999999999
Q ss_pred ---------------------cccceeeeecCCeEEecCCCeEEEEEEeeeCCCeEEEEEEEec
Q 039233 299 ---------------------LFRFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVAS 341 (359)
Q Consensus 299 ---------------------tsW~q~~fpl~~Pi~V~~G~~i~~~~~R~~~~~~VWyeW~~~~ 341 (359)
|||+|++|||++|+.|++|++|+++|||+++++||||||++++
T Consensus 385 ~~Ly~~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~~~vWYEW~v~s 448 (448)
T PF05185_consen 385 AVLYGDVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDDRKVWYEWSVES 448 (448)
T ss_dssp EEEECSEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCSTCEEEEEEEEE
T ss_pred EEeeCCeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCCCcEEEEEEEeC
Confidence 8999999999999999999999999999999999999999985
No 3
>PTZ00357 methyltransferase; Provisional
Probab=100.00 E-value=1.4e-72 Score=571.28 Aligned_cols=313 Identities=31% Similarity=0.475 Sum_probs=254.9
Q ss_pred CCCCcHHHHhhhcccccccCCCCCCCCCceeecccchhhhcccccCCCCCccccCcHHHHHHHhcCcccHHHHHHHHHHh
Q 039233 1 MDPLPEQERFELSYRDFLQSPLQGHNPLFHIISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYIQYQRAIGNA 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~y~d~lq~pl~~~~~~~~~~~~~~~~~~~~~~~~~~qPl~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~ 80 (359)
+|+.+..+ +|+||||.|| |||+|||+|+|||+||+|++||++|++||.++
T Consensus 613 qP~r~~~e----sYeD~LQ~PL--------------------------QPLsDNLES~TYEVFEKDpVKYdqYE~AI~kA 662 (1072)
T PTZ00357 613 EPTRDVFA----SFEGQLQLPL--------------------------QPLSHHLSSGVYEVFERDARKYRQYREAVFHY 662 (1072)
T ss_pred CCCcchhh----hhhhhhcccC--------------------------CchhhccchhhHHHHcCCcHHHHHHHHHHHHH
Confidence 45666665 9999999999 99999999999999999999999999999999
Q ss_pred hccc-------------------------------------CCcCChhH------HHHHHHHcCCCCeEEEEeCCHHHHH
Q 039233 81 LVDR-------------------------------------VPDEEASS------LTTAAEETGRKLKIYAVEKNPNAVV 117 (359)
Q Consensus 81 ~~d~-------------------------------------v~D~g~Gt------l~~~A~~aga~~~V~AVE~n~~a~~ 117 (359)
++|+ |+-+|+|- ...+++.+|.+++||||||||+++.
T Consensus 663 L~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~ 742 (1072)
T PTZ00357 663 VRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA 742 (1072)
T ss_pred HHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH
Confidence 8541 23445553 3477788999999999999966554
Q ss_pred HHHHHH-HhcCC-------CCeEEEEeCccccccCCC------------CccEEEeccccccCCCCChHHHHHHHhhccC
Q 039233 118 TLHSLV-RLEGW-------EKTVTIVSCDMRCWDAPE------------KADILVSELLGSFGDNELSPECLDGAQRFLK 177 (359)
Q Consensus 118 ~a~~~~-~~n~~-------~~~V~vi~~d~~~~~~p~------------k~DiIVSEllGs~~~~El~~e~L~~a~r~Lk 177 (359)
.++.+. ..+.| +++|+||++|||+|..++ |+||||||||||||||||+||||++++++||
T Consensus 743 ~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 743 FTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred HHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccCCHHHHHHHHHhhh
Confidence 444443 34568 567999999999997654 8999999999999999999999999999998
Q ss_pred C----Ce-------EEEccccceeeeeccchhhhhhhhcccccccCcchhhhhh-hhhhhhhhhccccccccccceEEEE
Q 039233 178 Q----DG-------ISIPSSYTSFIQPVTASKLHNDVIPCLCAQVSPLEAISFS-SKCALALQVKSHKDVVHFETAYVVK 245 (359)
Q Consensus 178 p----~G-------i~IP~~~t~~~~pi~s~~l~~~~~~~~~~~~~~~~~~~fs-~~~~~~~~~~~~~~~~~~e~pyV~~ 245 (359)
+ +| |+||++||+|++||+|++||+++..... .++. .+ .-| .......+++|||+.
T Consensus 823 diqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~---~glt---vP~p~c-------~~~haa~fet~YVV~ 889 (1072)
T PTZ00357 823 DIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAV---KGLT---VPPPGC-------HDHHAALNHTLLVTN 889 (1072)
T ss_pred hhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhh---cccc---cCCccc-------cccchhhcccceEEE
Confidence 6 56 4999999999999999999998742110 1100 00 001 011234588999999
Q ss_pred ecCceecCCCceeEEeecCCCCc----------------cccccceEEEEEEeeeCCCCceeEEEEEee-----------
Q 039233 246 VHSVARLAPCEPVFTFTHPNFST----------------KKSNQRYKKLRFEIPSDTGSSMVHGIFVSF----------- 298 (359)
Q Consensus 246 ~~~~~~Ls~p~~~f~F~~~~~~~----------------~~~~~r~~~l~F~i~~~g~~~~vhGfag~F----------- 298 (359)
++++..|+.||+||+|.||+... +.+|+|++.++|+++.++ +||||+|||
T Consensus 890 L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~---vlHGFAGYFdAvLYkDVt~~ 966 (1072)
T PTZ00357 890 LSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCG---RCCGLAGYFSAVLYQSATAP 966 (1072)
T ss_pred ecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCc---ceeeeeeEEEEEeecCCCcc
Confidence 99999999999999999998751 367899999999999887 999999999
Q ss_pred ---------------cccceeeeecC---CeEEecCCC---------eEEEEEEeee--CCCeEEEEEEEec--------
Q 039233 299 ---------------LFRFAIFFPLR---TPVCIRPGS---------PLEVHFWRCC--GSTKVWYEWCVAS-------- 341 (359)
Q Consensus 299 ---------------tsW~q~~fpl~---~Pi~V~~G~---------~i~~~~~R~~--~~~~VWyeW~~~~-------- 341 (359)
+||||+||||+ .+..++.|+ .|.+++.|++ +++||||||+++-
T Consensus 967 ~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~rVwYew~v~~~~~~~~~~ 1046 (1072)
T PTZ00357 967 ATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQRVWYEWSVTYGDAAVERQ 1046 (1072)
T ss_pred ceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccceEEEEEEEeechhhhhhc
Confidence 89999999998 788888887 8999999999 6899999999975
Q ss_pred -CC-------CCccccCCCceEEecC
Q 039233 342 -PN-------PSPVHNSNGRSYWVGL 359 (359)
Q Consensus 342 -p~-------~~~i~n~~G~~y~~~l 359 (359)
|. ..-+||.||-.-+|.|
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1072)
T PTZ00357 1047 SPSTSHDASAAPLVHNKNGWAASMLL 1072 (1072)
T ss_pred CCCcccCcccCceeecCcchhhhhcC
Confidence 22 2458999997655543
No 4
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-47 Score=364.77 Aligned_cols=251 Identities=22% Similarity=0.300 Sum_probs=216.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHh---hccc-CCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 039233 57 AQTYETFEKDSVKYIQYQRAIGNA---LVDR-VPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEK 130 (359)
Q Consensus 57 s~~Ye~f~~D~vry~~Y~~AI~~~---~~d~-v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~ 130 (359)
-.++|.|++|.+|+.+|+.||.++ ++|+ |+|+|||| ||++|++|||+ +|||||.+.. ++.|+++++.|++++
T Consensus 32 ~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~-~V~aVe~S~i-a~~a~~iv~~N~~~~ 109 (346)
T KOG1499|consen 32 FGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGAR-KVYAVEASSI-ADFARKIVKDNGLED 109 (346)
T ss_pred hHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcc-eEEEEechHH-HHHHHHHHHhcCccc
Confidence 457899999999999999999986 4674 79999998 99999999998 9999999985 589999999999999
Q ss_pred eEEEEeCccccccCC-CCccEEEeccccccCCCC-ChHHHHHHHhhccCCCeEEEccccceeeeeccchhhhhhhhcccc
Q 039233 131 TVTIVSCDMRCWDAP-EKADILVSELLGSFGDNE-LSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLC 208 (359)
Q Consensus 131 ~V~vi~~d~~~~~~p-~k~DiIVSEllGs~~~~E-l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l~~~~~~~~~ 208 (359)
+|++++|+++++++| +|+|+|||||||+++.-| ++..+|.++++||+|||+++|+.+++|++||++...+.+-.+
T Consensus 110 ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~--- 186 (346)
T KOG1499|consen 110 VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIG--- 186 (346)
T ss_pred eEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcC---
Confidence 999999999999999 999999999999988654 445688999999999999999999999999999998876432
Q ss_pred cc--cCcchhhhhhhhhhhhhhhccccccccccceEEEEecCceecCCCceeEEeecCCCCccccccceEEEEEEeeeCC
Q 039233 209 AQ--VSPLEAISFSSKCALALQVKSHKDVVHFETAYVVKVHSVARLAPCEPVFTFTHPNFSTKKSNQRYKKLRFEIPSDT 286 (359)
Q Consensus 209 ~~--~~~~~~~~fs~~~~~~~~~~~~~~~~~~e~pyV~~~~~~~~Ls~p~~~f~F~~~~~~~~~~~~r~~~l~F~i~~~g 286 (359)
+| ++++ ++.|. ......+|+|..+++.+++++|+-+-++|..+.. ..+.+....+++++++++
T Consensus 187 fW~~Vygf-----dms~~---------~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~-i~d~~F~s~f~l~v~r~~ 251 (346)
T KOG1499|consen 187 FWDDVYGF-----DMSCI---------KKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVK-IEDLSFTSPFKLKVTRNG 251 (346)
T ss_pred cccccccc-----chhhh---------hhhhhcccceeccChhHhcccceeeEEeeeeeee-ccceeeccceEEEEccCc
Confidence 45 6663 33332 1134678999999999999999999999988764 455567778999999988
Q ss_pred CCceeEEEEEee-----------------------cccceeeeecCCeEEecCCCeEEEEEE--eeeCC
Q 039233 287 GSSMVHGIFVSF-----------------------LFRFAIFFPLRTPVCIRPGSPLEVHFW--RCCGS 330 (359)
Q Consensus 287 ~~~~vhGfag~F-----------------------tsW~q~~fpl~~Pi~V~~G~~i~~~~~--R~~~~ 330 (359)
.+|||++|| |||+|++|.|++|+.|++|+.|.+++. ++.++
T Consensus 252 ---~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~ 317 (346)
T KOG1499|consen 252 ---YLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKN 317 (346)
T ss_pred ---eEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCC
Confidence 999999999 999999999999999999999997654 44444
No 5
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=3.2e-43 Score=334.77 Aligned_cols=248 Identities=22% Similarity=0.264 Sum_probs=209.1
Q ss_pred HHHhcCcccHHHHHHHHHHhhcc----cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Q 039233 61 ETFEKDSVKYIQYQRAIGNALVD----RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTI 134 (359)
Q Consensus 61 e~f~~D~vry~~Y~~AI~~~~~d----~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~v 134 (359)
..|++|-+|+..|++||..+-.| .|+|+|||+ |+++|++|||+ +|||||.++ |++.|++.++.|++.+||+|
T Consensus 153 QNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~-~vYAvEAS~-MAqyA~~Lv~~N~~~~rItV 230 (517)
T KOG1500|consen 153 QNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAK-KVYAVEASE-MAQYARKLVASNNLADRITV 230 (517)
T ss_pred HHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcc-eEEEEehhH-HHHHHHHHHhcCCccceEEE
Confidence 36789999999999999998754 479999987 99999999999 999999998 67899999999999999999
Q ss_pred EeCccccccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccchhhhhhhhcccccc----
Q 039233 135 VSCDMRCWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLHNDVIPCLCAQ---- 210 (359)
Q Consensus 135 i~~d~~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l~~~~~~~~~~~---- 210 (359)
|.|+++++++|||+||||||.||+++-||.+.|..-+|+|||||+|.|+|.-..+++||++++.||-+..+...+|
T Consensus 231 I~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~ 310 (517)
T KOG1500|consen 231 IPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQN 310 (517)
T ss_pred ccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876666677
Q ss_pred cCcchhhhhhhhhhhhhhhccccccccccceEEEEecCceecCCCceeEEeecCCCCccccccc-eEEEEEEeeeCCCCc
Q 039233 211 VSPLEAISFSSKCALALQVKSHKDVVHFETAYVVKVHSVARLAPCEPVFTFTHPNFSTKKSNQR-YKKLRFEIPSDTGSS 289 (359)
Q Consensus 211 ~~~~~~~~fs~~~~~~~~~~~~~~~~~~e~pyV~~~~~~~~Ls~p~~~f~F~~~~~~~~~~~~r-~~~l~F~i~~~g~~~ 289 (359)
++|.+ ++.. ....-.+.|.+|.|..++..-+++.+. -.+.|+.+.. +.+..+ ...++|++...|
T Consensus 311 fyGVd---Lt~L-------~g~a~~eYFrQPvVDtFD~RilmA~sv-~h~~dF~~~k-Eedlh~i~iPlkF~~~~~g--- 375 (517)
T KOG1500|consen 311 FYGVD---LTPL-------YGSAHQEYFRQPVVDTFDIRILMAKSV-FHVIDFLNMK-EEDLHEIDIPLKFHALQCG--- 375 (517)
T ss_pred ccccc---chhh-------hhhhhhhhhccccccccccceeeccch-Hhhhhhhhcc-cchheeecccceehhhhhc---
Confidence 34432 1111 111233679999999988776776542 2345555443 334433 357899999887
Q ss_pred eeEEEEEee---------------------cccceeeeecCCeEEecCCCeEEEEEE
Q 039233 290 MVHGIFVSF---------------------LFRFAIFFPLRTPVCIRPGSPLEVHFW 325 (359)
Q Consensus 290 ~vhGfag~F---------------------tsW~q~~fpl~~Pi~V~~G~~i~~~~~ 325 (359)
.+||+|+|| |||.|+...|..||.|++|++|++++.
T Consensus 376 ~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~ 432 (517)
T KOG1500|consen 376 RIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLL 432 (517)
T ss_pred ceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEE
Confidence 999999999 999999999999999999999998764
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=211.94 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=191.0
Q ss_pred cCcHHHHHHHhcCcccHHHHHHHHHHhhcc----------cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 039233 54 NLEAQTYETFEKDSVKYIQYQRAIGNALVD----------RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHS 121 (359)
Q Consensus 54 nL~s~~Ye~f~~D~vry~~Y~~AI~~~~~d----------~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~ 121 (359)
-|....|-.|++|.-|+.+|+.+|+.++.+ .|||+|+|| |||+|++|||. +|||+|.-..|++.|++
T Consensus 29 elArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 29 ELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARK 107 (636)
T ss_pred HHHHhhHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHH
Confidence 355677999999999999999999998842 268999998 99999999998 99999998889999999
Q ss_pred HHHhcCCCCeEEEEeCccccccCC--CCccEEEeccccccCCCCChHHHHHHH-hhccCCCeEEEccccceeeeeccchh
Q 039233 122 LVRLEGWEKTVTIVSCDMRCWDAP--EKADILVSELLGSFGDNELSPECLDGA-QRFLKQDGISIPSSYTSFIQPVTASK 198 (359)
Q Consensus 122 ~~~~n~~~~~V~vi~~d~~~~~~p--~k~DiIVSEllGs~~~~El~~e~L~~a-~r~Lkp~Gi~IP~~~t~~~~pi~s~~ 198 (359)
+..+|||.++|++|+..++++..- .++||+|.|.++.-+..|+....+.+| +++|+||...+|+++|.|++|++|..
T Consensus 108 I~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~ 187 (636)
T KOG1501|consen 108 IMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTF 187 (636)
T ss_pred HHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhh
Confidence 999999999999999999998643 579999999999877666554588888 57789999999999999999999999
Q ss_pred hhh--hhhcccccccCcch--hhhhhhhhhhhhhhccccccccccceEE-EEecCceecCCCceeEEeecCCCCcccccc
Q 039233 199 LHN--DVIPCLCAQVSPLE--AISFSSKCALALQVKSHKDVVHFETAYV-VKVHSVARLAPCEPVFTFTHPNFSTKKSNQ 273 (359)
Q Consensus 199 l~~--~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~~~~~~~~e~pyV-~~~~~~~~Ls~p~~~f~F~~~~~~~~~~~~ 273 (359)
|++ ++++.......|.. ..++ .+|.+.++ .++.-.+ +.-+.+.+||++-.+|.||+|..... ..+
T Consensus 188 l~~~ndl~~~~~~ts~gv~~~p~~l-esc~G~~s--------v~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s-~s~ 257 (636)
T KOG1501|consen 188 LCNLNDLRNNEAKTSDGVRLVPPGL-ESCFGIKS--------VQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDS-NSE 257 (636)
T ss_pred hhhhhccccccccccCCcccCCCcc-ccCCCchh--------HHHHHHhhcchhhheeecCcceeEEeecchhhhc-chh
Confidence 864 44332111101100 0000 01111111 1111111 12356789999999999999965321 111
Q ss_pred ceEEEEEEeeeCCCCceeEEEEEee-----------------------------cccceeeeecCC--eEEecCCCeEEE
Q 039233 274 RYKKLRFEIPSDTGSSMVHGIFVSF-----------------------------LFRFAIFFPLRT--PVCIRPGSPLEV 322 (359)
Q Consensus 274 r~~~l~F~i~~~g~~~~vhGfag~F-----------------------------tsW~q~~fpl~~--Pi~V~~G~~i~~ 322 (359)
......+..-..| .+.....|| .||.|+.++.++ -..+..++.. .
T Consensus 258 ~~~~r~~va~~Sg---~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~i~~~ss~-~ 333 (636)
T KOG1501|consen 258 IEELRPPVAVHSG---PLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNRIHNVSSL-M 333 (636)
T ss_pred hhhhcCccccccc---chhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCceeeccce-E
Confidence 1112334444454 888888898 899999988874 2222233221 1
Q ss_pred EEEeeeCCCeEEEEEEEec
Q 039233 323 HFWRCCGSTKVWYEWCVAS 341 (359)
Q Consensus 323 ~~~R~~~~~~VWyeW~~~~ 341 (359)
++-..++...+||....+.
T Consensus 334 ~v~~~H~~l~i~~~~h~~~ 352 (636)
T KOG1501|consen 334 TVFSYHLWLYIYRTDHYHC 352 (636)
T ss_pred EEeeeeeeeEEeeeeeecc
Confidence 2223455566777776654
No 7
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.72 E-value=3.7e-18 Score=152.35 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=119.2
Q ss_pred HHhcCcccHHHHHHHHHHhhcccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 62 TFEKDSVKYIQYQRAIGNALVDRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 62 ~f~~D~vry~~Y~~AI~~~~~d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
.++.|..|-..|..||.+...|.+.|+|+|| ||++|+++ |+ +|||||++|..+.+|++|+.-+|..+ +++|.||.
T Consensus 13 ~LL~D~eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~-A~-rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA 89 (252)
T COG4076 13 DLLRDVERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHA-AE-RVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDA 89 (252)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhh-hc-eEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccc
Confidence 4569999999999999999999999999887 99999998 77 99999999999999999988787766 99999999
Q ss_pred ccccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccch
Q 039233 140 RCWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTAS 197 (359)
Q Consensus 140 ~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~ 197 (359)
++++. +++|+|++|++++.+..|-.-.++.++-+|||.++.+||+...+-+.|+..+
T Consensus 90 ~~y~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 90 RDYDF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred ccccc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 99998 8999999999999775554334999999999999999999999999999765
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=9e-13 Score=107.82 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=77.4
Q ss_pred ccCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-ccccCCCCccEEEecc-cc
Q 039233 83 DRVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-RCWDAPEKADILVSEL-LG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-~~~~~p~k~DiIVSEl-lG 157 (359)
++|+|+|||+ ++..+++ .. ..+|+|||.||.+++.|+++....+..++|+++++|+ ..+...+++|+|++.. ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 4689999998 5544444 23 2499999999999999999997778899999999999 6677788999999855 11
Q ss_pred c-cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 158 S-FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s-~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. +...+...++|..+.+.|+|||+++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 1 1111223457888899999999976
No 9
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.34 E-value=1.3e-12 Score=126.29 Aligned_cols=110 Identities=25% Similarity=0.248 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHhhc--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC
Q 039233 69 KYIQYQRAIGNALV--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA 144 (359)
Q Consensus 69 ry~~Y~~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~ 144 (359)
-+...-++|.+... ++|+|+|||| |+++|++.||+ +|+|+|.+|.|+..|++|++.|+.++++++. ...+. .
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-c
Confidence 45566788888765 4799999998 99999999999 9999999999999999999999999988874 12221 2
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
.+++|+||++++...+ .+.+....++|||||.+|-+..
T Consensus 223 ~~~~dlvvANI~~~vL-----~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 223 EGKFDLVVANILADVL-----LELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CS-EEEEEEES-HHHH-----HHHHHHCHHHEEEEEEEEEEEE
T ss_pred cccCCEEEECCCHHHH-----HHHHHHHHHhhCCCCEEEEccc
Confidence 3899999999886532 2344555789999999887654
No 10
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=7.9e-12 Score=111.30 Aligned_cols=100 Identities=28% Similarity=0.328 Sum_probs=80.6
Q ss_pred cccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 82 VDRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 82 ~d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
..+++|+|||+ ++..+++.++..+|+|+|+|+.|+..|+++++.|++++ |+++++|..+--.++++|+|||+.--.-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchhc
Confidence 34799999998 88777777777789999999999999999999999999 9999999988655789999999863221
Q ss_pred CCC---CChHHHHHHHhhccCCCeEE
Q 039233 160 GDN---ELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~---El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+.. +...+++..+.++|||||.+
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEE
Confidence 211 23466788899999999985
No 11
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=1.2e-11 Score=111.51 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=77.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
++|+|+|||+ ++..+++.+.+.+|+|||.|+.|++.|++++++++..+ |+++++|++++...+++|+|+|..++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~~--- 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRALA--- 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhhh---
Confidence 4789999998 55544455444599999999999999999998888865 99999999998666799999996522
Q ss_pred CCCChHHHHHHHhhccCCCeEEEc
Q 039233 161 DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
..++.+..+.+.|||||+++-
T Consensus 120 ---~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 120 ---SLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ---CHHHHHHHHHHhcCCCCEEEE
Confidence 246677888999999999883
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=4e-11 Score=108.85 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHhh------c--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc
Q 039233 69 KYIQYQRAIGNAL------V--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD 138 (359)
Q Consensus 69 ry~~Y~~AI~~~~------~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d 138 (359)
+-+.|++.+..++ . .+|+|+|||+ ++.+.++.....+|+|||.|+.|++.|+++.+.+++.+ |+++++|
T Consensus 25 ~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d 103 (187)
T PRK00107 25 PEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEecc
Confidence 3446666665443 2 4689999998 44443333234599999999999999999999999877 9999999
Q ss_pred cccccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 139 MRCWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 139 ~~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
+.++...+++|+|+|..++ ..++++..+.+.|||||+++..
T Consensus 104 ~~~~~~~~~fDlV~~~~~~------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 104 AEEFGQEEKFDVVTSRAVA------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HhhCCCCCCccEEEEcccc------CHHHHHHHHHHhcCCCeEEEEE
Confidence 9998766789999986432 2567888899999999997733
No 13
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.9e-11 Score=116.62 Aligned_cols=110 Identities=27% Similarity=0.268 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhc--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC
Q 039233 71 IQYQRAIGNALV--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE 146 (359)
Q Consensus 71 ~~Y~~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~ 146 (359)
..--+++.+.++ ..|+|+|||| |+++|++.||+ +|+|+|.+|.|++.|++|++.|+....+++-..+..+....+
T Consensus 150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~ 228 (300)
T COG2264 150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENG 228 (300)
T ss_pred HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccC
Confidence 334578887775 3699999998 99999999999 999999999999999999999998865555555555544446
Q ss_pred CccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 147 KADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 147 k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
++|+||++++-.. ..+....+.+.|||||++|=+.
T Consensus 229 ~~DvIVANILA~v-----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 229 PFDVIVANILAEV-----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccEEEehhhHHH-----HHHHHHHHHHHcCCCceEEEEe
Confidence 9999999876432 2345566789999999988666
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.22 E-value=7.9e-11 Score=106.03 Aligned_cols=121 Identities=22% Similarity=0.198 Sum_probs=92.9
Q ss_pred HHHhcC-cccHHH-HHHHHHHhh-c----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCe
Q 039233 61 ETFEKD-SVKYIQ-YQRAIGNAL-V----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKT 131 (359)
Q Consensus 61 e~f~~D-~vry~~-Y~~AI~~~~-~----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~ 131 (359)
+.|++| -+...+ =-+|+..+. . ++++|+|||| ++.-+++++.+.+|||||++++++++.++|.++.|. ++
T Consensus 7 ~~F~~~~~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n 85 (187)
T COG2242 7 ELFERDEGGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DN 85 (187)
T ss_pred hhhccCCCCCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-Cc
Confidence 457777 344333 337776553 1 4789999987 666556888888999999999999999999999995 55
Q ss_pred EEEEeCccccccCCC-CccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 132 VTIVSCDMRCWDAPE-KADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 132 V~vi~~d~~~~~~p~-k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
++++.||.-+.-... ++|.|+ +|.. ...+++|+.+...|||||.++=+..+
T Consensus 86 ~~vv~g~Ap~~L~~~~~~daiF---IGGg---~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 86 LEVVEGDAPEALPDLPSPDAIF---IGGG---GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEEEeccchHhhcCCCCCCEEE---ECCC---CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 999999999973222 799999 5543 34788999999999999998755444
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.20 E-value=5.8e-11 Score=103.24 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=79.0
Q ss_pred ccCCcCChhH--HHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEecccc
Q 039233 83 DRVPDEEASS--LTTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEllG 157 (359)
.+|+|+|||+ ++...+ +.+...+|++||.|+.|+..|+++++.++.. +++++++|+.++. .++++|+|++. +
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~--~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN--G 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE--S
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc--C
Confidence 3689999998 444433 5444569999999999999999999988888 6999999999977 44899999974 2
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.+..-....++|..+.+.||++|+++-....
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 2221222346888999999999998765554
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=5.3e-11 Score=108.36 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=80.3
Q ss_pred HHHHHhhc----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCc
Q 039233 75 RAIGNALV----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKA 148 (359)
Q Consensus 75 ~AI~~~~~----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~ 148 (359)
+.|..++. .+|+|+|||+ ++..+++.| .+|+|+|.|+.|++.|+++.+.+++. ++....|+..+.+++++
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCC
Confidence 44444442 4689999998 665555655 49999999999999999998877764 78888888777777789
Q ss_pred cEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 149 DILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 149 DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
|+|+|..+-.....+..++++..+.+.|||||+++
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 99998654333333456778999999999999844
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=2.1e-10 Score=108.01 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=91.8
Q ss_pred HHHHHhcCccc-HHHHHHHHHHhh----c--ccCCcCChhH--HHH-HHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 039233 59 TYETFEKDSVK-YIQYQRAIGNAL----V--DRVPDEEASS--LTT-AAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEG 127 (359)
Q Consensus 59 ~Ye~f~~D~vr-y~~Y~~AI~~~~----~--d~v~D~g~Gt--l~~-~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~ 127 (359)
+|+.|.+-.++ |+...+.+...+ . .+|+|+|||+ ++. ++.+ .....+|+|||.|+.|++.|++++..++
T Consensus 27 ~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~ 106 (247)
T PRK15451 27 VFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK 106 (247)
T ss_pred hhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 68888754444 555554444332 2 3699999998 433 3332 2334699999999999999999998888
Q ss_pred CCCeEEEEeCccccccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 128 WEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 128 ~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
..++|+++++|+.++..+ .+|+||+-..-.+...+....++....+.|||||.++=..
T Consensus 107 ~~~~v~~~~~d~~~~~~~-~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 107 APTPVDVIEGDIRDIAIE-NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCCeEEEeCChhhCCCC-CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888899999999988654 5999997543334443334668889999999999976543
No 18
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=7e-11 Score=97.45 Aligned_cols=98 Identities=27% Similarity=0.337 Sum_probs=77.8
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccc--
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELL-- 156 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEll-- 156 (359)
+|+|.|||+ ++.++++.+ ..+|+++|+||.+++.|++++..+++.++++++++|.+++. ...++|+||+..-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred EEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 688999887 777777777 44999999999999999999999999899999999999985 4579999998642
Q ss_pred cccC----CCCChHHHHHHHhhccCCCeEE
Q 039233 157 GSFG----DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 157 Gs~~----~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+... ..++..+.+..+.+.|||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence 2211 1224567888999999999985
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.13 E-value=7.6e-10 Score=102.40 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHhhc----ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 68 VKYIQYQRAIGNALV----DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 68 vry~~Y~~AI~~~~~----d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
.++..|++++.+.+. ++|+|+|||+ ++ .++...|...+|+++|.|+++++.|+++.+..+. ++|+++++|.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~ 106 (231)
T TIGR02752 28 QRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAM 106 (231)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechh
Confidence 356777777776653 3799999998 44 4455555555999999999999999999887666 56999999999
Q ss_pred cccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 141 CWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 141 ~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++..+ +++|+|++.. .+..-+...++|..+.+.|||||.++
T Consensus 107 ~~~~~~~~fD~V~~~~--~l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGF--GLRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred cCCCCCCCccEEEEec--ccccCCCHHHHHHHHHHHcCcCeEEE
Confidence 87654 6899999632 12122234568888899999999986
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=2.1e-10 Score=104.59 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=77.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
.+|+|+|||+ .+...++.| .+|+|||.|+.|++.|+++.+.+++.+ |+++.+|+.++.+++++|+|+|-.+-.+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhhC
Confidence 4799999998 554444555 399999999999999999998888855 99999999988777889999986543444
Q ss_pred CCCChHHHHHHHhhccCCCeEE
Q 039233 161 DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
..+....++..+.+.|||||.+
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEE
Confidence 4344567888899999999984
No 21
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=4.3e-10 Score=108.45 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=83.7
Q ss_pred HHHHHHHhhc--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCc
Q 039233 73 YQRAIGNALV--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKA 148 (359)
Q Consensus 73 Y~~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~ 148 (359)
..+++.+... ++|+|+|||+ ++.++++.|++ +|+|||.++.|++.|+++++.|+.+++++++.++.... .++++
T Consensus 149 ~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~-~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~f 226 (288)
T TIGR00406 149 CLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAA-KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKA 226 (288)
T ss_pred HHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCc
Confidence 3445554433 4799999998 77888888877 99999999999999999999999998899988874432 35689
Q ss_pred cEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 149 DILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 149 DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
|+||++.+.. ...+.+..+.+.|||||.++=+.
T Consensus 227 DlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 227 DVIVANILAE-----VIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred eEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999976532 23457777889999999987543
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.08 E-value=4.4e-10 Score=107.80 Aligned_cols=101 Identities=27% Similarity=0.306 Sum_probs=73.1
Q ss_pred ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-ccccc
Q 039233 83 DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs 158 (359)
++|||+|||- +++ +|.+.| ++|++|..|++-.+.|++.+++.|+.++|++..+|.+++.. ++|.||| |.+-.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvSi~~~Eh 139 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVSIEMFEH 139 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGG
T ss_pred CEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEEEechhh
Confidence 3699999985 554 455557 59999999999999999999999999999999999998654 9999998 22222
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
++ .+..+..+..+.++|||||+++=+..+
T Consensus 140 vg-~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 140 VG-RKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp TC-GGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred cC-hhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 33 234577899999999999997655443
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.06 E-value=3.7e-10 Score=102.83 Aligned_cols=97 Identities=24% Similarity=0.367 Sum_probs=80.5
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
.++||+|||. -+.+.++.| ..|+|+|.|+.+++.+++..+..++. |+....|+.+..+++++|+|+|-.+-.|+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred CcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccC
Confidence 4789999998 677777777 69999999999999999988877665 99999999999999999999997777788
Q ss_pred CCCChHHHHHHHhhccCCCeEEE
Q 039233 161 DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..+..+.++...+..++|||+.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEE
Confidence 88889999999999999999843
No 24
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.06 E-value=8.6e-10 Score=106.29 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=75.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc-----
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL----- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl----- 155 (359)
.+|+|+|||+ ++.+.++...+.+|+|+|.|+.|++.|++|++.+++.++|+++++|+.+.-.++++|+|||+.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~ 202 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDA 202 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCc
Confidence 3689999998 555555544445999999999999999999999999889999999997643345899999852
Q ss_pred --ccc-------------cCCC---CChHHHHHHHhhccCCCeEEE
Q 039233 156 --LGS-------------FGDN---ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 --lGs-------------~~~~---El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+.. ++.. +....++..+.++|+|||.++
T Consensus 203 ~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 203 EDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred cchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 110 0001 112446777889999999876
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=1.5e-09 Score=104.04 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=84.8
Q ss_pred cCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs~ 159 (359)
+|||+|||= +++ +|.+.| ++|+||..|++....++++++.-|++++|+++-.|.+++.. ++|.||| |.+-.+
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhv 150 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHV 150 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhhHHHh
Confidence 689999974 554 455555 59999999999999999999999999999999999999764 5999999 222223
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEccccceeeeec
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPV 194 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi 194 (359)
| .+..+..+..+.+.|+|||+++=+..+..=.+-
T Consensus 151 g-~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~ 184 (283)
T COG2230 151 G-KENYDDFFKKVYALLKPGGRMLLHSITGPDQEF 184 (283)
T ss_pred C-cccHHHHHHHHHhhcCCCceEEEEEecCCCccc
Confidence 3 355788999999999999998766665554443
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=8.2e-10 Score=104.32 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=83.5
Q ss_pred cCcccHHHHHHHHHHhh---c---ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 039233 65 KDSVKYIQYQRAIGNAL---V---DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS 136 (359)
Q Consensus 65 ~D~vry~~Y~~AI~~~~---~---d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~ 136 (359)
+..+|+..+.+-+...+ . .+|+|+|||+ ++...++.| .+|+|||.|+.|++.|+++.+..++.++|++++
T Consensus 22 ~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~ 99 (255)
T PRK11036 22 KGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH 99 (255)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEE
Confidence 44556655544333332 1 3689999998 554444555 489999999999999999998888888899999
Q ss_pred Ccccccc--CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 137 CDMRCWD--APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 137 ~d~~~~~--~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|+.++. .++.+|+|++-..=.... .....|..+.+.|||||+++
T Consensus 100 ~d~~~l~~~~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 100 CAAQDIAQHLETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred cCHHHHhhhcCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEE
Confidence 9999874 457899999632111111 23467888999999999974
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.05 E-value=8.2e-10 Score=106.35 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=79.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
++|||+|||+ .+..+++.| .+|+|||.|+.|++.|+++.+.++. +|+++.+|+.+..+++++|+|+|..+-.+.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4799999998 555555556 4999999999999999999988777 589999999887778899999997655555
Q ss_pred CCCChHHHHHHHhhccCCCeEE
Q 039233 161 DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+.+..+.++....+.|||||.+
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEE
Confidence 5556778999999999999983
No 28
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=1.3e-09 Score=103.03 Aligned_cols=99 Identities=32% Similarity=0.393 Sum_probs=77.9
Q ss_pred HHHHHHhhc--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCcc
Q 039233 74 QRAIGNALV--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKAD 149 (359)
Q Consensus 74 ~~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~D 149 (359)
.+++.+.+. ++|+|+|||+ ++.++++.|+. +|+|+|.|+.|+..|+++.+.|+..+++++..++. ++|
T Consensus 110 l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD 181 (250)
T PRK00517 110 LEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KAD 181 (250)
T ss_pred HHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcC
Confidence 344544442 4799999998 77888888877 89999999999999999999998877788777653 799
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
+|++.+.. +....++..+.+.|||||++|=+
T Consensus 182 ~Vvani~~-----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILA-----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 99986543 22345677788999999998843
No 29
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.04 E-value=9.5e-10 Score=107.82 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=75.0
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVS-EllGs~ 159 (359)
+|+|+|||+ ++...++.| .+|+|||.++.+++.|+++.+.++..++|+++++|++++.. .+++|+|++ |.+-.+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 689999998 555555555 48999999999999999887766666689999999998754 368999997 222222
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.+ ..++|....+.|||||.++=+
T Consensus 212 ~d---~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 212 AN---PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred CC---HHHHHHHHHHHcCCCcEEEEE
Confidence 22 456888889999999997743
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.04 E-value=4.5e-10 Score=105.33 Aligned_cols=108 Identities=24% Similarity=0.304 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhc----ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 71 IQYQRAIGNALV----DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 71 ~~Y~~AI~~~~~----d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
..|++.+.+.+. ++|||+|||| ++. ++.+.|.+.+|+++|.|+.|++.|+++....++. +|+++++|++++.
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp 111 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP 111 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc
Confidence 346655544432 4799999998 554 4555666679999999999999999999987777 6999999999998
Q ss_pred CC-CCccEEEeccccccCC--CCChHHHHHHHhhccCCCeEEE
Q 039233 144 AP-EKADILVSELLGSFGD--NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 144 ~p-~k~DiIVSEllGs~~~--~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+ +.+|+|++ +|+. -.....+|....|.|||||.++
T Consensus 112 ~~d~sfD~v~~----~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 112 FPDNSFDAVTC----SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp S-TT-EEEEEE----ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCceeEEEH----HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 75 57999996 2332 2235678999999999999864
No 31
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=7.5e-10 Score=107.88 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=75.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc--ccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL--LGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl--lGs 158 (359)
.+|+|+|||+ ++...++.....+|+|+|+|+.|+..|++|++.++..++|+++++|+.+.-.+.++|+|||+. ++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 3689999998 555444443445999999999999999999999999889999999997643345899999852 110
Q ss_pred ------------------cCCC---CChHHHHHHHhhccCCCeEEE
Q 039233 159 ------------------FGDN---ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ------------------~~~~---El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++.+ +....++..+.++|+|||.++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 1111 112456788889999999875
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.03 E-value=1.7e-09 Score=97.40 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=74.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
++|+|+|||+ ++..+++.+...+|+++|.|+.++..|+++++.++.. +|+++.+|... .+++++|+|++...
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~D~v~~~~~---- 106 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKADAIFIGGS---- 106 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCCCEEEECCC----
Confidence 4789999988 6665555555569999999999999999999888775 49999999853 34678999997422
Q ss_pred CCCChHHHHHHHhhccCCCeEEEc
Q 039233 161 DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.+...+++..+.+.|||||.++=
T Consensus 107 -~~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 107 -GGNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEE
Confidence 12356788889999999999653
No 33
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.03 E-value=1.4e-09 Score=98.95 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=76.4
Q ss_pred ccCCcCChhH--HHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEecccc
Q 039233 83 DRVPDEEASS--LTTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllG 157 (359)
+.|+|+|||+ ++..++ ..+...+|+|||.++.+++.|+++++.++..++|+++.+|+.+. ..++++|.|++..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-- 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-- 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC--
Confidence 4689999988 655544 44544599999999999999999999988777899999999874 3346899999732
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..+...++|..+.+.|||||.++
T Consensus 120 ---~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 120 ---GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred ---CcccHHHHHHHHHHHcCCCcEEE
Confidence 12235678999999999999987
No 34
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=6.9e-10 Score=104.53 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=77.0
Q ss_pred ccCCcCChhH--HHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC---CCccEEEeccc
Q 039233 83 DRVPDEEASS--LTTA-AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP---EKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~-A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p---~k~DiIVSEll 156 (359)
.+|+|+|||+ ++++ |+|.. +++|.|||+.+.|++.|+++++.|+|++||+|+++|+.++... .++|+|||+.-
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 4789999987 5544 44433 3699999999999999999999999999999999999998532 46899999752
Q ss_pred ----cccC-----------CCC-ChHHHHHHHhhccCCCeEE
Q 039233 157 ----GSFG-----------DNE-LSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 157 ----Gs~~-----------~~E-l~~e~L~~a~r~Lkp~Gi~ 182 (359)
|+-. ..+ ...+++..+.+.|||||.+
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l 166 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRL 166 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEE
Confidence 2220 111 2456778889999999973
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.02 E-value=1.1e-09 Score=100.74 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=77.3
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs~ 159 (359)
+|||+|||+ ++ .+|.+.+ ..+|+++|.|++++..|+++++..++.++|+++.+|+.+...++++|+|+| +.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 589999987 33 4444443 359999999999999999999988999999999999976655678999997 333333
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
. ..+++|..+.+.|||||.++=
T Consensus 81 ~---~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 81 K---DKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred C---CHHHHHHHHHHHcCCCCEEEE
Confidence 2 256788999999999999774
No 36
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.01 E-value=1.1e-09 Score=100.46 Aligned_cols=103 Identities=32% Similarity=0.393 Sum_probs=71.8
Q ss_pred HHHHHHHhhc--ccCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCC
Q 039233 73 YQRAIGNALV--DRVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEK 147 (359)
Q Consensus 73 Y~~AI~~~~~--d~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k 147 (359)
-++-|.+.++ ++|+|.-||+ .+..+++ ++++ +|+|+|+||.|++.++++++.|+++++|+++++|.+++-...+
T Consensus 91 Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~-~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~ 169 (200)
T PF02475_consen 91 ERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAK-RVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGK 169 (200)
T ss_dssp HHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SS-EEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-
T ss_pred HHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCcc-EEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccc
Confidence 3344444443 4799998887 4444444 4444 8999999999999999999999999999999999999866789
Q ss_pred ccEEEeccccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 148 ADILVSELLGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 148 ~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+|.||..+..+ +.+.|+.+.+++|+||++
T Consensus 170 ~drvim~lp~~------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLPES------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--TSS------GGGGHHHHHHHEEEEEEE
T ss_pred cCEEEECChHH------HHHHHHHHHHHhcCCcEE
Confidence 99999655443 567889999999999874
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.01 E-value=4e-09 Score=100.37 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhc----ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHH--hcCCCCeEEEEeCccc
Q 039233 70 YIQYQRAIGNALV----DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVR--LEGWEKTVTIVSCDMR 140 (359)
Q Consensus 70 y~~Y~~AI~~~~~----d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~--~n~~~~~V~vi~~d~~ 140 (359)
...|++.+.+.+. ++|+|+|||| ++. ++.+.|...+|+|||.|++|++.|+++.. ..+..++|+++++|++
T Consensus 58 ~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~ 137 (261)
T PLN02233 58 HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137 (261)
T ss_pred hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence 3456655443332 4799999998 444 45555554599999999999999988753 1223457999999999
Q ss_pred cccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 141 CWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 141 ~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
++..+ +.+|+|++-.. +-.-+...++|..+.|.|||||.++=.
T Consensus 138 ~lp~~~~sfD~V~~~~~--l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 138 DLPFDDCYFDAITMGYG--LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred cCCCCCCCEeEEEEecc--cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 98765 47999986321 111122456888999999999996543
No 38
>PRK14967 putative methyltransferase; Provisional
Probab=98.99 E-value=1.7e-09 Score=100.30 Aligned_cols=97 Identities=24% Similarity=0.168 Sum_probs=74.3
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
++|+|+|||+ ++..+++.|++ +|+++|.|+.++..++++.+.++. +++++++|+.+....+++|+||++. .+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~-~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~np-Py~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG-SVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNP-PYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECC-CCCC
Confidence 4799999998 55556666655 999999999999999999987765 5899999998864457899999873 2211
Q ss_pred C-----------------C---CChHHHHHHHhhccCCCeEEE
Q 039233 161 D-----------------N---ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~-----------------~---El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. . +....++..+.++||+||+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 1 0 113346677889999999977
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=98.98 E-value=6.4e-09 Score=102.63 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=76.4
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEe-cccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVS-ELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVS-EllG 157 (359)
++|||+|||+ ++ .+|.+.| .+|+|||.|+.++..|+++.+.+++.++|+++.+|+.++..+ +.+|+|+| +.+.
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 3689999997 44 4444444 499999999999999999998888988999999999987654 68999998 3222
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.+. ...+.+..+.|.|||||.++=
T Consensus 198 h~~---d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 198 HMP---DKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEE
Confidence 232 245688889999999998653
No 40
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.98 E-value=1.9e-09 Score=103.76 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=75.3
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc-----
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL----- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl----- 155 (359)
.+|+|+|||+ ++...++.....+|+|+|.|+.|+..|++|++.++..++|+++++|+.+.-...++|+|||+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 4699999998 555555544445999999999999999999999888888999999998743334899999952
Q ss_pred -----ccc----------cCCCC---ChHHHHHHHhhccCCCeEEE
Q 039233 156 -----LGS----------FGDNE---LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 -----lGs----------~~~~E---l~~e~L~~a~r~Lkp~Gi~I 183 (359)
+.. +++.. ....++..+.++|+|||.++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 100 11111 23456777889999999864
No 41
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.98 E-value=1.8e-09 Score=107.90 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=77.5
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CeEEEEeCccccccCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE--KTVTIVSCDMRCWDAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~--~~V~vi~~d~~~~~~p~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++..+++.+...+|++||.|+.|++.|++|++.|+.+ .+++++.+|+.+-..+.++|+|||+.--.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 309 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence 4799999998 7766666555669999999999999999999988754 37999999986643456899999974322
Q ss_pred c---CCCCChHHHHHHHhhccCCCeEE
Q 039233 159 F---GDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 159 ~---~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
- ...+...+++..+.+.|||||.+
T Consensus 310 ~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 310 QQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred cCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 1 12233456788899999999984
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.98 E-value=4e-09 Score=87.12 Aligned_cols=98 Identities=28% Similarity=0.268 Sum_probs=74.7
Q ss_pred ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEecccc
Q 039233 83 DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllG 157 (359)
++|+|+|||+ ++. +|.+.+. .+|+++|.|+.+++.|+++++.++.. +++++.+|..+. ..++++|+|++..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~-- 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG-- 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC--
Confidence 4689999987 444 4444433 49999999999999999999887766 499999998752 2357899999732
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
. .+...+.+..+.++|||||.++-+-+
T Consensus 97 ~---~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 S---GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred c---chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 1 22346789999999999999876544
No 43
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=3.8e-09 Score=99.26 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhc----ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 71 IQYQRAIGNALV----DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 71 ~~Y~~AI~~~~~----d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
..|+++....+. ++|||+|||| + ..+|..+| ..+|+|+|.|+.|+..|+++..+.++.+ |++|++|++++.
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP 114 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC
Confidence 457766655542 5899999999 4 45667777 5599999999999999999999878888 999999999998
Q ss_pred CCC-CccEEEeccccccCCC-CChHHHHHHHhhccCCCeE
Q 039233 144 APE-KADILVSELLGSFGDN-ELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 144 ~p~-k~DiIVSEllGs~~~~-El~~e~L~~a~r~Lkp~Gi 181 (359)
.|. .+|++.+ ++.+-| ...+..|..+.|.|||||+
T Consensus 115 f~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 115 FPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred CCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeE
Confidence 764 6899984 333322 2357789999999999995
No 44
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=3.4e-09 Score=97.17 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++ .+|...+...+|+++|.++++++.|+++++.++..++++++++|..+.- ...++|+|++.. .
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~--~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA--A 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc--C
Confidence 5899999998 43 4555555445999999999999999999998888888999999998743 235899999632 1
Q ss_pred cCCCCChHHHHHHHhhccCCCeEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
. .+......+.|||||++
T Consensus 152 ~------~~~~~~l~~~L~~gG~l 169 (205)
T PRK13944 152 A------STIPSALVRQLKDGGVL 169 (205)
T ss_pred c------chhhHHHHHhcCcCcEE
Confidence 1 11223456789999986
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.96 E-value=3.5e-09 Score=100.71 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=79.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++ .++...|+..+|+|||.|+.+++.|+++.+..++. +++++.+|++++..+ +.+|+|++...-.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 4799999998 33 44555576668999999999999999999887775 699999999987654 4799999875443
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
... ..+.+|..+.+.|||||.++-.
T Consensus 158 ~~~--d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 158 LSP--DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CCC--CHHHHHHHHHHHcCCCcEEEEE
Confidence 321 2456899999999999997654
No 46
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=4.5e-09 Score=100.23 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=103.0
Q ss_pred cccccccCCCCCCCCCceeec-ccchhhhcccccCCCCCccccCcHHHHHHHhcCcccHH-HHHHHHHHhhc-----ccC
Q 039233 13 SYRDFLQSPLQGHNPLFHIIS-DEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYI-QYQRAIGNALV-----DRV 85 (359)
Q Consensus 13 ~y~d~lq~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~qPl~dnL~s~~Ye~f~~D~vry~-~Y~~AI~~~~~-----d~v 85 (359)
+|+-. .+++...+++.|+. +++-...|.+.. .|--++ ..||..-. .|.+++...+. .+|
T Consensus 5 ~~~~~--~~~~~~~~~i~v~e~~~~R~L~f~~~~--~qs~~~----------~~~P~~l~~~y~~~m~~~l~~~~~~~~v 70 (262)
T PRK04457 5 PYRRL--RPAKAGFPEVGVSEEGGVRSLHLGSDT--VQSSMR----------IDDPSELELAYTRAMMGFLLFNPRPQHI 70 (262)
T ss_pred hhhhh--ccccccCCCcEEEecCCEEEEEECCCc--ceeeee----------cCCcccccCHHHHHHHHHHhcCCCCCEE
Confidence 45554 23333455667744 344445665521 122222 24555543 57777765432 368
Q ss_pred CcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEeccccccC-
Q 039233 86 PDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLGSFG- 160 (359)
Q Consensus 86 ~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllGs~~- 160 (359)
+|+|+|+ ++...++.....+|++||+||++++.|++.+..++..++|+++.+|.+++ ..++++|+|+.+..+...
T Consensus 71 L~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~ 150 (262)
T PRK04457 71 LQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGI 150 (262)
T ss_pred EEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCC
Confidence 9999987 55544333334599999999999999999887655667899999999875 345789999976544321
Q ss_pred CCCC-hHHHHHHHhhccCCCeEEEc
Q 039233 161 DNEL-SPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 161 ~~El-~~e~L~~a~r~Lkp~Gi~IP 184 (359)
...+ ..+.+..+.+.|+|||+++=
T Consensus 151 ~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 151 IDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred ccccCcHHHHHHHHHhcCCCcEEEE
Confidence 1112 36788999999999999764
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.96 E-value=1.2e-09 Score=99.25 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=68.9
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEE-ecccccc
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILV-SELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIV-SEllGs~ 159 (359)
.++|+|||. ++ .+|.+.. ++.|+|.++.|++.|+++.+. +.+ |+++++|+.++.+++++|+|| || ++++
T Consensus 46 ~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp~~~P~~~FDLIV~SE-VlYY 118 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG--LPH-VEWIQADVPEFWPEGRFDLIVLSE-VLYY 118 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TTT---SS-EEEEEEES--GGG
T ss_pred eeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCCCCCCCCCeeEEEEeh-HhHc
Confidence 589999987 54 5566664 999999999999999999863 555 999999999999999999987 77 6666
Q ss_pred CCC-CChHHHHHHHhhccCCCeEEEccc
Q 039233 160 GDN-ELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 160 ~~~-El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
++. +.+...++.....|+|||.+|=..
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 644 445557777888999999987644
No 48
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.95 E-value=4.2e-09 Score=98.37 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=76.4
Q ss_pred cCCcCChhH--HHH-HHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS--LTT-AAEET-GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~-~A~~a-ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+|+|||+ ++. ++.+. ....+|++||.|+.|++.|+++++..+...+|+++++|+.++.++ ++|+|++-..=.+
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~l~~ 134 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFTLQF 134 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecchhh
Confidence 689999998 443 34432 234589999999999999999988766667899999999998765 6899886432222
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
...+...++|..+.+.|||||.++=..
T Consensus 135 ~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 135 LPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 222224568899999999999977653
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.92 E-value=3.3e-09 Score=114.03 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=86.4
Q ss_pred HHHHHHhhcc-cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CeEEEEeCcccccc--CCCC
Q 039233 74 QRAIGNALVD-RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE-KTVTIVSCDMRCWD--APEK 147 (359)
Q Consensus 74 ~~AI~~~~~d-~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~-~~V~vi~~d~~~~~--~p~k 147 (359)
++++.+..++ +|||+|||| ++..|++.|++ +|++||.|+.|++.|++|++.|+++ ++++++++|+.++- ..++
T Consensus 530 R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~-~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~ 608 (702)
T PRK11783 530 RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAK-STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQ 608 (702)
T ss_pred HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCC
Confidence 4556655554 799999987 88888888887 8999999999999999999999997 68999999998752 3568
Q ss_pred ccEEEeccccccCC----------CCChHHHHHHHhhccCCCeEEEccc
Q 039233 148 ADILVSELLGSFGD----------NELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 148 ~DiIVSEllGs~~~----------~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+|+||++.- +|.. .....+++..+.+.|+|||+++=++
T Consensus 609 fDlIilDPP-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 609 FDLIFIDPP-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred cCEEEECCC-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999998632 2221 1123557778889999999976443
No 50
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.91 E-value=6e-09 Score=104.92 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=83.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CeEEEEeCcccccc-----CCCCccEEEec
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE-KTVTIVSCDMRCWD-----APEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~-~~V~vi~~d~~~~~-----~p~k~DiIVSE 154 (359)
.+|||+|||| ++..|+..|+. +|++||.|+.|++.|++|++.|+++ ++|+++++|+.++- ..+++|+||+.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~-~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCS-QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 3699999987 66666777766 9999999999999999999999997 57999999998862 13589999976
Q ss_pred cccccCCCC--------ChHHHHHHHhhccCCCeEEEccccceeee
Q 039233 155 LLGSFGDNE--------LSPECLDGAQRFLKQDGISIPSSYTSFIQ 192 (359)
Q Consensus 155 llGs~~~~E--------l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~ 192 (359)
.-- |..+. ...+++..+.+.|+|||+++=++++.++.
T Consensus 301 PP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 301 PPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 542 22211 13345556789999999999877766653
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.91 E-value=6.8e-09 Score=92.78 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=72.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccc-ccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELL-GSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEll-Gs~ 159 (359)
++|+|+|||+ ++..+++.|. +|+++|.|+.+++.|+++.+.++. +++++++|..+.. +.++|+|+|..- ...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCCC
Confidence 5799999998 6666666663 899999999999999999987765 4899999987754 458999998631 000
Q ss_pred C------------------CCCChHHHHHHHhhccCCCeEEE
Q 039233 160 G------------------DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~------------------~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..+...++|..+.++|||||.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 0 11124567888899999999743
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.89 E-value=1.3e-09 Score=88.29 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=67.5
Q ss_pred CCcCChhH---HHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEe-cc-c
Q 039233 85 VPDEEASS---LTTAAEET--GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVS-EL-L 156 (359)
Q Consensus 85 v~D~g~Gt---l~~~A~~a--ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVS-El-l 156 (359)
|+|+|||+ +..++... |...++++||.|++|++.++++.+..+. +++++++|++++.. .+++|+|++ -. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 68999998 44444443 4435999999999999999999887555 69999999999863 459999998 33 4
Q ss_pred cccCCCCChHHHHHHHhhccCCCe
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDG 180 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~G 180 (359)
..+ ..+....+|....+.|||||
T Consensus 79 ~~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred CCC-CHHHHHHHHHHHHHHhCCCC
Confidence 443 33345668888899999998
No 53
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=1.2e-08 Score=95.76 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=79.8
Q ss_pred HHHHHHHhhc-ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--C-
Q 039233 73 YQRAIGNALV-DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--A- 144 (359)
Q Consensus 73 Y~~AI~~~~~-d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~- 144 (359)
+-..+.+..+ .+|+|+|||+ ++++++..+ ..+|++||.|+++++.|+++++++|++++|+++.+|..+.- +
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 3333333333 4689999876 444444333 34999999999999999999999999999999999998851 1
Q ss_pred ----CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 145 ----PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 145 ----p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
.+++|+|+.+ . +....++.+..+.+.|+|||+++=..
T Consensus 138 ~~~~~~~fD~VfiD---a--~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVD---A--DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEEC---C--CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 3589999853 2 12334678888899999999987543
No 54
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=5.6e-09 Score=108.30 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=74.2
Q ss_pred ccCCcCChhH--HHHHH-HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc----
Q 039233 83 DRVPDEEASS--LTTAA-EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL---- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A-~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl---- 155 (359)
.+|+|+|||+ ++..+ .+.+ ..+|+|+|+|+.|++.|++|++.+++.++|+++++|+.+....+++|+|||+.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 3689999998 55443 3333 34999999999999999999998888889999999987643346899999942
Q ss_pred -----------ccc------cCCCCC---hHHHHHHHhhccCCCeEEEc
Q 039233 156 -----------LGS------FGDNEL---SPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 156 -----------lGs------~~~~El---~~e~L~~a~r~Lkp~Gi~IP 184 (359)
..+ ++++.. ...++..+.++|+|||.++=
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 000 111111 23456778899999998764
No 55
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.87 E-value=3.9e-09 Score=82.67 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=65.3
Q ss_pred CcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccccccCC
Q 039233 86 PDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSFGD 161 (359)
Q Consensus 86 ~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~~~ 161 (359)
||+|||+ ...++.+ +.. +|+++|.|+.++..++++... .++.++++|++++..+ +.+|+|++...=...
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~-~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGA-SVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTC-EEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhc-cCC-EEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeec-
Confidence 6899987 3444544 434 999999999999999987653 3466999999999765 689999973322222
Q ss_pred CCChHHHHHHHhhccCCCeEEE
Q 039233 162 NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 162 ~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+....++..+.|.|||||+++
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEe
Confidence 445678999999999999875
No 56
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=94.48 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=70.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++ .+|...|...+|++||.++++++.|+++++..+.+ +|+++++|..+.. ...++|+|++. ++
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~~~fD~I~~~--~~ 154 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEENAPYDRIYVT--AA 154 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcCCCcCEEEEC--CC
Confidence 5899999998 44 44555555559999999999999999999987775 4999999987743 33689999963 11
Q ss_pred cCCCCChHHHHHHHhhccCCCeEE-Ecc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGIS-IPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~-IP~ 185 (359)
.+++.....+.|||||++ +|.
T Consensus 155 ------~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 ------GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ------cccchHHHHHhhCCCcEEEEEE
Confidence 122334556789999984 553
No 57
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=100.44 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=73.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGD 161 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~ 161 (359)
+|+|+|||+ .+..+++.|++ +|+|||.|+.++..++...+..+-..+|+++.+|++++..++++|+|+| +|.+.-
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s--~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS--MGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE--CChhhc
Confidence 699999998 56556666877 8999999998876555443332234579999999999877789999998 454332
Q ss_pred CCChHHHHHHHhhccCCCeEEEc
Q 039233 162 NELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 162 ~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.....+.|..+.+.|||||.+|=
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEE
Confidence 22235678889999999999764
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.87 E-value=5.5e-09 Score=96.29 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=70.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++ .+|...+...+|+|||.++.+++.|+++++.+++. +|+++++|..+.. ...++|+|++.. .
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Ii~~~--~ 155 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPLAPYDRIYVTA--A 155 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcccCCCCEEEEcC--C
Confidence 5799999998 33 45555554457999999999999999999988884 5999999998743 235899999631 1
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+.+.....+.|||||+++
T Consensus 156 ------~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 156 ------GPKIPEALIDQLKEGGILV 174 (215)
T ss_pred ------cccccHHHHHhcCcCcEEE
Confidence 1234455678899999864
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.85 E-value=1.1e-08 Score=93.58 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=74.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-cccc--C-CCCccEEEecc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-RCWD--A-PEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-~~~~--~-p~k~DiIVSEl 155 (359)
++|+|+|||+ ++ .+|.+. ...+|+|||.|+.++..|+++.+.+++. +|+++++|+ +.+. . +..+|+|++..
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4689999998 33 444444 3348999999999999999999888774 599999999 6654 3 46799999854
Q ss_pred ccccCC------CCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGD------NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~------~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
...... ....+.+|..+.+.|||||+++
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 322111 1124678899999999999975
No 60
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.85 E-value=1.1e-08 Score=99.98 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
++|+|+|||+ ++..++..|++ +|+|||.|+.++..++...+..+-..++.++.++++++.....+|+|+| +|.+-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s--~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS--MGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE--cchhh
Confidence 3689999998 55555566777 8999999998887654433322224579999999999876678999998 55433
Q ss_pred CCCChHHHHHHHhhccCCCeEEEc
Q 039233 161 DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
--....+.|..+.+.|||||.++=
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEE
Confidence 222234688889999999999763
No 61
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=100.73 Aligned_cols=93 Identities=31% Similarity=0.360 Sum_probs=79.5
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEecccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~ 159 (359)
+.|+|.=+|. .+..+++.|+. +|||+|+||.|+..+++|++.|+++++|+.|+||++++... ..+|-|+ ||..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi---m~~p 265 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII---MGLP 265 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE---eCCC
Confidence 3788886766 78888888876 69999999999999999999999999999999999998665 7899999 5544
Q ss_pred CCCCChHHHHHHHhhccCCCeEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
. .+.+.+..|.+.|+++|++
T Consensus 266 ~---~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 266 K---SAHEFLPLALELLKDGGII 285 (341)
T ss_pred C---cchhhHHHHHHHhhcCcEE
Confidence 3 2466888999999999985
No 62
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=9.5e-09 Score=98.96 Aligned_cols=142 Identities=26% Similarity=0.270 Sum_probs=93.0
Q ss_pred CCCCCcee-ecccchhhhcccccCCCCCccccCcHHHHHHHhcCcccHHHHHHHHHHhh--cc-cCCcCChhH--HHHHH
Q 039233 24 GHNPLFHI-ISDEFCTIEFSNYYLSFQPLMDNLEAQTYETFEKDSVKYIQYQRAIGNAL--VD-RVPDEEASS--LTTAA 97 (359)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~~~~~~~~qPl~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~~--~d-~v~D~g~Gt--l~~~A 97 (359)
++-|..+| -+..|+.+.|.-..--+-|--| |++ --+++...+ .+ +|+|+|||| ++.+.
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~d-----Te~-----------Lve~~l~~~~~~~~~ilDlGTGSG~iai~l 128 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPD-----TEL-----------LVEAALALLLQLDKRILDLGTGSGAIAIAL 128 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCCc-----hHH-----------HHHHHHHhhhhcCCcEEEecCChHHHHHHH
Confidence 44444566 4456777766666666666555 111 111211111 12 599999998 77777
Q ss_pred HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc----------cc----c-----
Q 039233 98 EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL----------LG----S----- 158 (359)
Q Consensus 98 ~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl----------lG----s----- 158 (359)
++.+...+|+|+|.|+.|++.|++|...|++ .++.++++|.-+- ..+++|+|||+. +. +
T Consensus 129 a~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~A 206 (280)
T COG2890 129 AKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLA 206 (280)
T ss_pred HhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-cCCceeEEEeCCCCCCCcccccChhhhccCHHHH
Confidence 7777667999999999999999999999999 6688888865442 334999999942 11 0
Q ss_pred -cCCCC---ChHHHHHHHhhccCCCeEEE
Q 039233 159 -FGDNE---LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 -~~~~E---l~~e~L~~a~r~Lkp~Gi~I 183 (359)
+++.. ....++..+.++|+|||.++
T Consensus 207 l~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 207 LVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred HccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 11111 23445667788999988743
No 63
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=1.4e-08 Score=98.22 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=81.2
Q ss_pred ccCCcCChh----HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCeEEEEeCccccccC-CCCccEEEeccc
Q 039233 83 DRVPDEEAS----SLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-EGWEKTVTIVSCDMRCWDA-PEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~G----tl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEll 156 (359)
++|+|+||| |...+|++...+.+|+++|+|+.|++.|++.++. .++.++|++..+|+.+... .+++|+|++-.+
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~AL 204 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAAL 204 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEecc
Confidence 579999999 4345555555666999999999999999999954 7899999999999998643 368999997532
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
=++ +.+.-.++|+...+.|+|||.++=.+
T Consensus 205 i~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 205 VGM-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccc-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 222 22456779999999999999977554
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.83 E-value=1.3e-08 Score=100.54 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=74.3
Q ss_pred cccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccc-cc
Q 039233 82 VDRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELL-GS 158 (359)
Q Consensus 82 ~d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEll-Gs 158 (359)
.++|+|+|||+ ++..+++.+...+|++||.|+.|+..|+++++.|+.. .+++.+|+.+. .++++|+|||... ..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCccEEEECCCccC
Confidence 45799999998 6666555555569999999999999999999998875 46678887663 4678999999752 11
Q ss_pred cC--CCCChHHHHHHHhhccCCCeEE
Q 039233 159 FG--DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 159 ~~--~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
.. +-+...+.+..+.+.|||||.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEE
Confidence 11 1122456788899999999985
No 65
>PHA03412 putative methyltransferase; Provisional
Probab=98.82 E-value=2.1e-08 Score=93.98 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=73.7
Q ss_pred ccCCcCChhH--HHHHHHHc---CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc--
Q 039233 83 DRVPDEEASS--LTTAAEET---GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL-- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~a---ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl-- 155 (359)
.+|+|+|||+ ++.++++. ....+|+|||+|+.|+..|++++. ++.++++|+.......++|+|||+.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECCCC
Confidence 5799999998 55444432 113489999999999999997742 3889999999877777999999974
Q ss_pred --ccc--cC----CCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 156 --LGS--FG----DNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 156 --lGs--~~----~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
+.. .+ +......++..|.++|++|+.++|+..-
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 111 01 1223445788888899999999998653
No 66
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.80 E-value=4.3e-08 Score=88.93 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=71.1
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++..+++.+...+|+|||.|+.+++.|+++++.++.. +|+++++|+.+. .+....|.++.+ .
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~---~ 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIE---G 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEE---C
Confidence 4689999987 5554444433359999999999999999999888775 499999999762 223346777643 1
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.+...++|..+.+.|||||.++=.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 123467888999999999986544
No 67
>PRK06922 hypothetical protein; Provisional
Probab=98.79 E-value=3.6e-08 Score=103.77 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=92.1
Q ss_pred CccccCcHHHHHHHhcCcccHHHHHHHHH----------------Hhhc-ccCCcCChhH--HH-HHHHHcCCCCeEEEE
Q 039233 50 PLMDNLEAQTYETFEKDSVKYIQYQRAIG----------------NALV-DRVPDEEASS--LT-TAAEETGRKLKIYAV 109 (359)
Q Consensus 50 Pl~dnL~s~~Ye~f~~D~vry~~Y~~AI~----------------~~~~-d~v~D~g~Gt--l~-~~A~~aga~~~V~AV 109 (359)
|+-+-..-..|+.|.+++.+|+.|.++.. ..+. ++|+|+|||+ ++ .+|.+. ...+|+|+
T Consensus 370 ~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGI 448 (677)
T PRK06922 370 MMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGI 448 (677)
T ss_pred hHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEE
Confidence 66655555668888888888887753221 1111 3689999998 33 444444 34599999
Q ss_pred eCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEecc-----ccccC------CCCChHHHHHHHhhc
Q 039233 110 EKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSEL-----LGSFG------DNELSPECLDGAQRF 175 (359)
Q Consensus 110 E~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEl-----lGs~~------~~El~~e~L~~a~r~ 175 (359)
|.|+.|++.|+++...+ +.++.++++|+.++. .++.+|+|++.. ++.+- ..+....+|..+.+.
T Consensus 449 DIS~~MLe~Ararl~~~--g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV 526 (677)
T PRK06922 449 DISENVIDTLKKKKQNE--GRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV 526 (677)
T ss_pred ECCHHHHHHHHHHhhhc--CCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 99999999999886543 356899999998864 356899999742 22110 112345688888999
Q ss_pred cCCCeEEEcc
Q 039233 176 LKQDGISIPS 185 (359)
Q Consensus 176 Lkp~Gi~IP~ 185 (359)
|||||.++=.
T Consensus 527 LKPGGrLII~ 536 (677)
T PRK06922 527 LKPGGRIIIR 536 (677)
T ss_pred cCCCcEEEEE
Confidence 9999997653
No 68
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.79 E-value=7.5e-09 Score=96.55 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=78.7
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVS-EllGs~ 159 (359)
+|||+|||- |+.-.|+.| ..|+|+|+++.++++|+.....++.. |...+..++++... +++|+|+| |.+-..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 699999975 888888999 49999999999999999998887664 77888888887654 89999997 444333
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
-+ ...++.++.+.+||||+++=+...
T Consensus 138 ~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 138 PD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 22 233778889999999998776655
No 69
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.77 E-value=2e-08 Score=94.75 Aligned_cols=91 Identities=20% Similarity=0.152 Sum_probs=67.0
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
.+|+|+|||+ ++...++.....+|+++|.|+.|++.|++. .++++++|++++....++|+|+|..+=...
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAALQWV 102 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhhhhC
Confidence 3699999998 554443332334999999999999888652 378999999988655789999984332222
Q ss_pred CCCChHHHHHHHhhccCCCeEEE
Q 039233 161 DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ...+.|..+.+.|||||.++
T Consensus 103 ~--d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 103 P--EHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred C--CHHHHHHHHHHhCCCCcEEE
Confidence 2 23567888899999999864
No 70
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.76 E-value=3.6e-08 Score=93.93 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=83.1
Q ss_pred HHHHhc-CcccHH---HHHHHHHHh-hc--ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 039233 60 YETFEK-DSVKYI---QYQRAIGNA-LV--DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE 129 (359)
Q Consensus 60 Ye~f~~-D~vry~---~Y~~AI~~~-~~--d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~ 129 (359)
||.+.. |..... .-++++... +. .+|||+|||+ ++ .+|.+.| .+|++||.++.++..|+++... .
T Consensus 24 ~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~---~ 98 (263)
T PTZ00098 24 YEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD---K 98 (263)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc---C
Confidence 777765 766663 333444332 11 3799999997 33 3344444 4999999999999999987643 4
Q ss_pred CeEEEEeCccccccCC-CCccEEEec-cccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 130 KTVTIVSCDMRCWDAP-EKADILVSE-LLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 130 ~~V~vi~~d~~~~~~p-~k~DiIVSE-llGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
++|+++.+|+.+...+ ..+|+|+|. .+-.+. .+....+|..+.+.|||||.++=
T Consensus 99 ~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 99 NKIEFEANDILKKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CceEEEECCcccCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 6799999999876654 579999983 222221 12356688999999999999774
No 71
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.76 E-value=3.7e-08 Score=95.46 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=76.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEE-ecccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILV-SELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIV-SEllGs~ 159 (359)
++++|+|||+ ++..+++.....+|+++|. |.+++.++++++..+..++|+++.+|+.+...| .+|+|+ +..+-.+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh~~ 228 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILYSA 228 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhhcC
Confidence 3689999988 5655555555679999997 779999999999889999999999999876555 479876 3333222
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
..+....+|..+.+.|||||+++=..
T Consensus 229 -~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 229 -NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred -ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 22334568899999999999975443
No 72
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.75 E-value=4.8e-08 Score=92.59 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=68.3
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccc--
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELL-- 156 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEll-- 156 (359)
+++|+|||+ ++..+++.....+|+|+|.|+.|++.|++|.+.++ ++++++|+.+.- ..+++|+||++.-
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 689999998 55544333223489999999999999999998765 478999987742 2357999998741
Q ss_pred --ccc-----------------CCCC---ChHHHHHHHhhccCCCeEEE
Q 039233 157 --GSF-----------------GDNE---LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 --Gs~-----------------~~~E---l~~e~L~~a~r~Lkp~Gi~I 183 (359)
+.. +... ...+++..+.++|||||.++
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 110 0011 13457778889999999966
No 73
>PRK04266 fibrillarin; Provisional
Probab=98.75 E-value=3.6e-08 Score=92.16 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=66.2
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc----cCCCCccEEEecc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW----DAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~----~~p~k~DiIVSEl 155 (359)
++|+|+|||+ ...+|.+.+ +.+|||+|.++.|++.+.++.+. . ..|..+.+|+.+. .+++++|+|+++.
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~--~-~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE--R-KNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--c-CCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 4799999987 344555554 34999999999999888777654 2 3489999999752 3457899999863
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
-. .......|..+.+.|||||.+
T Consensus 150 ~~----p~~~~~~L~~~~r~LKpGG~l 172 (226)
T PRK04266 150 AQ----PNQAEIAIDNAEFFLKDGGYL 172 (226)
T ss_pred CC----hhHHHHHHHHHHHhcCCCcEE
Confidence 21 111123578889999999983
No 74
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=6.6e-08 Score=87.90 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=75.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-c-C--CC-CccEEEeccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-D-A--PE-KADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~-~--p~-k~DiIVSEll 156 (359)
+|+|++||| ++..|+..|++ +|++||.|+.|+..+++|++.++..++++++++|+.++ . + .. .+|+|+ +
T Consensus 52 ~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~---~ 127 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY---L 127 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE---E
Confidence 689998887 88888888887 99999999999999999999999988899999999664 1 1 22 367777 4
Q ss_pred cccCCCCChHHHHHHH--hhccCCCeEEEccc
Q 039233 157 GSFGDNELSPECLDGA--QRFLKQDGISIPSS 186 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a--~r~Lkp~Gi~IP~~ 186 (359)
+-.-......+++... ..+|+++|++|=..
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 4311223456666554 35789999877543
No 75
>PRK00811 spermidine synthase; Provisional
Probab=98.75 E-value=4.5e-08 Score=94.33 Aligned_cols=104 Identities=22% Similarity=0.224 Sum_probs=77.3
Q ss_pred ccCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhc--CC--CCeEEEEeCcccccc--CCCCccEEEe
Q 039233 83 DRVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLE--GW--EKTVTIVSCDMRCWD--APEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n--~~--~~~V~vi~~d~~~~~--~p~k~DiIVS 153 (359)
++||++|||+ ++..+.+ .+.+ +|.+||+++.+++.|++.+... +. ..||+++.+|.+++- ..+++|+||+
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~-~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVE-KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCC-EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 4799999986 4444444 3555 9999999999999999987532 22 468999999999863 3578999999
Q ss_pred ccccccCCCC-C-hHHHHHHHhhccCCCeEEEcccc
Q 039233 154 ELLGSFGDNE-L-SPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 154 EllGs~~~~E-l-~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
++.+..+..+ + ..+.+..+.+.|+|||+++=+..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8755443222 2 35677888999999999985443
No 76
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.74 E-value=1e-07 Score=87.73 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=74.8
Q ss_pred cCCcCChhH--HHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEecccccc
Q 039233 84 RVPDEEASS--LTTAAEETGR-KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga-~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~ 159 (359)
+|+|+|||+ ++..+++.+. ..+|+++|.++.+++.++++...+++..+++++.+|+.+... +.++|+|++- ..+
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~--~~l 131 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA--FGL 131 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe--ccc
Confidence 689999987 4444444443 359999999999999999998777777789999999988754 3679999852 112
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..-....++|..+.+.|+|||+++
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEE
Confidence 222235678899999999999865
No 77
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.74 E-value=5.9e-08 Score=91.44 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=69.7
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
++|+|+|||+ ++ .+|.+.+. .+|+|||.|+.|+..|+++. .++.++.+|+.++..+.++|+|+|...=..
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccEEEEccChhh
Confidence 4699999998 44 44444433 39999999999999988763 248899999998877779999998432112
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.. .....|..+.+.|||||+++-+
T Consensus 106 ~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 LP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 21 2356888889999999986543
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.74 E-value=6.1e-08 Score=97.74 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=69.9
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC--CCCccEEEeccc--
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA--PEKADILVSELL-- 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~--p~k~DiIVSEll-- 156 (359)
.+++|+|||+ ++...++.....+|+|+|.|+.|++.|++|++.++ .+|+++++|+.+... ..++|+|||+.-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 3689999998 55544433233499999999999999999998765 479999999976432 357999999651
Q ss_pred cc------------------cCCCC---ChHHHHHHHhhccCCCeEEE
Q 039233 157 GS------------------FGDNE---LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 Gs------------------~~~~E---l~~e~L~~a~r~Lkp~Gi~I 183 (359)
.. ++.+. ...+++..+.++|+|||.++
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 11 01111 12245566678999999853
No 79
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=6.5e-08 Score=91.68 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHhhc-------ccCCcCChhH--HHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc
Q 039233 69 KYIQYQRAIGNALV-------DRVPDEEASS--LTTA-AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD 138 (359)
Q Consensus 69 ry~~Y~~AI~~~~~-------d~v~D~g~Gt--l~~~-A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d 138 (359)
-++.+-+++...+. +.++|+|||| +|.. +...+ ..+|+|||+++.|+..|.+|+.++++.++|.+++-+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecc
Confidence 47778888877664 2479999998 3322 23333 569999999999999999999999999999999888
Q ss_pred cccc---c---CCCCccEEEecc------------------------ccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 139 MRCW---D---APEKADILVSEL------------------------LGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 139 ~~~~---~---~p~k~DiIVSEl------------------------lGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
|+.- + +..+.|+|||+. .|.....+....++..|-|.|+|||.+
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred cccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 8762 1 236899999952 121112222334556678999998874
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.72 E-value=8.1e-08 Score=89.51 Aligned_cols=99 Identities=22% Similarity=0.210 Sum_probs=71.9
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccc----
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLG---- 157 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllG---- 157 (359)
+|+|+|||+ ++...++.....+|+++|.|+.++..|+++++.+++. +++++++|+.+....+++|+||+..-=
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYIPEA 168 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCCCchh
Confidence 689999998 4443334333459999999999999999999988886 599999999875445789999985310
Q ss_pred -------ccCC-----------C--CChHHHHHHHhhccCCCeEEE
Q 039233 158 -------SFGD-----------N--ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 -------s~~~-----------~--El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.... + +....++..+.++|+|||.++
T Consensus 169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~ 214 (251)
T TIGR03534 169 DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLL 214 (251)
T ss_pred hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEE
Confidence 0000 0 001246677889999999864
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=98.70 E-value=6.5e-08 Score=86.01 Aligned_cols=99 Identities=24% Similarity=0.280 Sum_probs=71.9
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCe-EEEEeCccccccCCCCccEEEecccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKT-VTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~-V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
++++|+|||+ ++...++.+ .+|+|+|.|++++..++++++.+++.++ +.++++|+.+...+.++|+|+++..-..
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcCC
Confidence 4689999987 444333334 3999999999999999999998888766 9999999987544557999997532100
Q ss_pred ---------------CC----CCChHHHHHHHhhccCCCeEEE
Q 039233 160 ---------------GD----NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ---------------~~----~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.. .......+..+.+.|||||.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 00 0112345777889999999765
No 82
>PLN02476 O-methyltransferase
Probab=98.67 E-value=9.3e-08 Score=91.88 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=76.7
Q ss_pred cCCcCChhH--HHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cC-----CCCccEEEe
Q 039233 84 RVPDEEASS--LTTA-AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DA-----PEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~-A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~-----p~k~DiIVS 153 (359)
+|+++||++ .++. |.-.+...+|+++|.++++++.|+++++++|++++|+++.||..+. ++ .+++|+|+
T Consensus 121 ~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF- 199 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAF- 199 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEE-
Confidence 689999976 3333 3333444589999999999999999999999999999999999875 12 35799999
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
++.- ...-++.++.+.+.|+|||++|=...
T Consensus 200 --IDa~--K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 200 --VDAD--KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred --ECCC--HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 4432 23457788899999999999875543
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.67 E-value=8.8e-08 Score=87.05 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=73.3
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CC-CCccEEEecc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---AP-EKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p-~k~DiIVSEl 155 (359)
.+++|+|||+ ++ .+|.+. ....|+|||.++.+++.|+++++.++++ +|+++++|+.++. .+ ..+|.|++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4689999997 43 444444 4559999999999999999999888886 5999999998753 33 4799998754
Q ss_pred ccccCC-----CC-ChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGD-----NE-LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~-----~E-l~~e~L~~a~r~Lkp~Gi~I 183 (359)
-+-.-. +. ..++.|..+.+.|||||.++
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 222111 11 13568888999999999963
No 84
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.67 E-value=4.6e-09 Score=84.41 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=53.6
Q ss_pred CcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC--eEEEEeCccccccCCCCccEEEe-cccccc
Q 039233 86 PDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEK--TVTIVSCDMRCWDAPEKADILVS-ELLGSF 159 (359)
Q Consensus 86 ~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~--~V~vi~~d~~~~~~p~k~DiIVS-EllGs~ 159 (359)
||+|||+ + ..++.+. ...+++++|.|+.|++.|++++...+..+ ++++...+..+...++++|+|++ +.+..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 6899998 3 3344443 33499999999999988898888754333 33344444433334469999996 333334
Q ss_pred CCCCChHHHHHHHhhccCCCeEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+...++|..+.+.|||||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 45678999999999999985
No 85
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.67 E-value=6.4e-08 Score=95.02 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=75.1
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccc-cc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELL-GS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEll-Gs 158 (359)
+.|+|.|||| ++..|+..| .+|+|+|.|+.|+..|++|++..+..+ ++++++|++++..+ +++|+||++.- |-
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 3689999987 555555665 389999999999999999999888888 99999999998653 68999999742 22
Q ss_pred c-C--CC---CChHHHHHHHhhccCCCeE
Q 039233 159 F-G--DN---ELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 159 ~-~--~~---El~~e~L~~a~r~Lkp~Gi 181 (359)
. + .. ++..+.|..+.+.|||||.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 1 1 11 2246688888999999996
No 86
>PRK08317 hypothetical protein; Provisional
Probab=98.66 E-value=2.3e-07 Score=84.92 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhc----ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 70 YIQYQRAIGNALV----DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 70 y~~Y~~AI~~~~~----d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
+..|++.+...+. ++|+|+|||+ + ..+|.+.+...+|+++|.|+.++..|+++.. ....+++++.+|+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC
Confidence 3456655555442 4799999987 3 3455555444599999999999999988732 3456799999999886
Q ss_pred cC-CCCccEEEecc-ccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 143 DA-PEKADILVSEL-LGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 143 ~~-p~k~DiIVSEl-lGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.. +.++|+|++.. +.++. ....++..+.+.|||||.++=
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLE---DPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCCceEEEEechhhccC---CHHHHHHHHHHHhcCCcEEEE
Confidence 54 36899999742 23332 245688888999999998763
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.66 E-value=9.5e-08 Score=90.57 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=70.0
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccc-----
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELL----- 156 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEll----- 156 (359)
+|+|+|||+ ++...++.....+|+|+|.|+.++..|+++.. ++...+|+++++|+.+...+.++|+|||+.-
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~ 189 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPEA 189 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCcCCcc
Confidence 689999998 44444444344599999999999999999987 4456679999999966433478999998521
Q ss_pred ------cccC----------CC---CChHHHHHHHhhccCCCeEEE
Q 039233 157 ------GSFG----------DN---ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 ------Gs~~----------~~---El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.... .+ +....++..+.++|||||.++
T Consensus 190 ~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 190 DIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred hhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 0000 00 112345566779999999865
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.65 E-value=1.5e-07 Score=91.47 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHhhc--ccCCcCChhH--HHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-ccCC
Q 039233 72 QYQRAIGNALV--DRVPDEEASS--LTTAAEETGR-KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WDAP 145 (359)
Q Consensus 72 ~Y~~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga-~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~~p 145 (359)
.+.+.|...+. ..|+|+|||| .+....+++. ..+|+|||.|++|+..|+++++...-+.+|..+++|+++ ..++
T Consensus 52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34445555553 3689999998 3333333332 358999999999999999988754334568889999998 4555
Q ss_pred CCc---cEEEecccccc-C--CCCChHHHHHHHhhccCCCeEEE
Q 039233 146 EKA---DILVSELLGSF-G--DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 146 ~k~---DiIVSEllGs~-~--~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+. +.++. ++|+. + ..+....+|..+.+.|+|||.++
T Consensus 132 ~~~~~~~~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 132 PEPAAGRRLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred cccccCCeEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 544 44333 45542 2 22224457888899999999876
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.65 E-value=1.2e-07 Score=97.36 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=72.9
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEecccccc
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~ 159 (359)
+|+|+|||+ ++ .+|.+.| .+|+|||.|+.|+..|+++.. +...+|+++.+|+.+..++ +++|+|+|. +++
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~--~~l 342 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR--DTI 342 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC--Ccc
Confidence 689999997 43 3444444 489999999999999998764 4567899999999987654 579999983 333
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.--.....+|..+.+.|||||.++=.
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 22222456889999999999997744
No 90
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.64 E-value=1.6e-07 Score=86.53 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=71.2
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-cccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs~ 159 (359)
++|+|+|||+ ++...++.+ .+|+|||.|++|+..|+++...++..++++++.+|+.+.. +++|+|++ +.+-.+
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY 132 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence 4689999997 544444444 3899999999999999999987777678999999998865 78999997 222222
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..+.....+..+.+.+++++++.
T Consensus 133 -~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 133 -PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred -CHHHHHHHHHHHHHHhCCCEEEE
Confidence 22334456777778888776654
No 91
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.63 E-value=3.1e-07 Score=83.60 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhc----ccCCcCChhH--HHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 71 IQYQRAIGNALV----DRVPDEEASS--LTTAAEETGRK-LKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 71 ~~Y~~AI~~~~~----d~v~D~g~Gt--l~~~A~~aga~-~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
..|.+.+...+. .+|+|+|||+ ++...++.+.. .+++++|.|+.++..++++.. +.++++++.+|+.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC
Confidence 345444444432 3689999987 44444444432 499999999999999888764 5567999999999875
Q ss_pred C-CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 144 A-PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 144 ~-p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ++++|+|++... +..-......|..+.+.|+|||+++
T Consensus 102 ~~~~~~D~i~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 102 FEDNSFDAVTIAFG--LRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred CCCCcEEEEEEeee--eCCcccHHHHHHHHHHHcCCCcEEE
Confidence 4 357999986321 1112234568888999999999876
No 92
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.63 E-value=4.6e-08 Score=93.36 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=85.7
Q ss_pred HhcCcccHHHHHHHHHHhh------c--ccCCcCChhH------HHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHHH
Q 039233 63 FEKDSVKYIQYQRAIGNAL------V--DRVPDEEASS------LTTAAEETGR-----KLKIYAVEKNPNAVVTLHSLV 123 (359)
Q Consensus 63 f~~D~vry~~Y~~AI~~~~------~--d~v~D~g~Gt------l~~~A~~aga-----~~~V~AVE~n~~a~~~a~~~~ 123 (359)
|-+|+.-++.-++.+...+ . -+|+|+|||| |+|..++.+. +.+|+|+|.|+.|++.|++.+
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 4467766666665554332 1 2589999987 5665555432 468999999999999999854
Q ss_pred Hh----c----------------------CCCCeEEEEeCccccccC-CCCccEEEe-ccccccCCCCChHHHHHHHhhc
Q 039233 124 RL----E----------------------GWEKTVTIVSCDMRCWDA-PEKADILVS-ELLGSFGDNELSPECLDGAQRF 175 (359)
Q Consensus 124 ~~----n----------------------~~~~~V~vi~~d~~~~~~-p~k~DiIVS-EllGs~~~~El~~e~L~~a~r~ 175 (359)
-. . ...++|++.++|+.+..+ .+++|+|+| ..+.+|. .+...+++....+.
T Consensus 153 y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~ 231 (264)
T smart00138 153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEA 231 (264)
T ss_pred CCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHH
Confidence 10 0 123479999999998765 578999998 3444443 34455688889999
Q ss_pred cCCCeEEEccc
Q 039233 176 LKQDGISIPSS 186 (359)
Q Consensus 176 Lkp~Gi~IP~~ 186 (359)
|||||.++=..
T Consensus 232 L~pGG~L~lg~ 242 (264)
T smart00138 232 LKPGGYLFLGH 242 (264)
T ss_pred hCCCeEEEEEC
Confidence 99999976443
No 93
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.62 E-value=1.4e-07 Score=86.61 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=71.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEllGs 158 (359)
.+|+|+|||+ +++.|...++. +|++||+++.+++.|++|++.++.. +++++++|+.++- ..+++|+||++.- +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~-~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP-y 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAA-GATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP-F 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCC-EEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC-C
Confidence 4799999987 66654444565 9999999999999999999988875 5999999998742 2346999998765 1
Q ss_pred cCCCCChHHHHHHHh--hccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQ--RFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~--r~Lkp~Gi~IP~ 185 (359)
. ..+..++++... .+|+|+|+++=+
T Consensus 132 -~-~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 132 -R-KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -C-CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 1 123445555443 457888876533
No 94
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.62 E-value=1.6e-07 Score=86.25 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=70.2
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccccC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~~ 160 (359)
+|+|+|||+ ++...++.+...+|+++|.++.++..++++.. .+++++.+|+.+... ++++|+|++..+-...
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence 589999987 44444555566689999999999888877543 368999999998764 4679999985432222
Q ss_pred CCCChHHHHHHHhhccCCCeEEE
Q 039233 161 DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
....+.|..+.+.|||||.++
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEE
Confidence 124568899999999999876
No 95
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=1.8e-07 Score=95.46 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=75.3
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEeccc-
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELL- 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEll- 156 (359)
++|+|+|||+ .+ .+|.+.+.+.+|+|+|.|++++..++++++.+|..+ |+++++|++++. +++++|+|+++.-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCC
Confidence 4699999987 44 344444334599999999999999999999988876 999999998863 3468999998642
Q ss_pred -c--ccCCCC----------------ChHHHHHHHhhccCCCeEEE
Q 039233 157 -G--SFGDNE----------------LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 -G--s~~~~E----------------l~~e~L~~a~r~Lkp~Gi~I 183 (359)
| .+..+. +..++|..+.++|||||.++
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 1 111000 12357888999999999987
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.61 E-value=2.2e-07 Score=72.04 Aligned_cols=99 Identities=21% Similarity=0.208 Sum_probs=72.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEecccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEllGs~ 159 (359)
+++|+|||+ ++..+.+.+.. +++++|.+++++..+++..+. +...+++++++|..+.. .+.++|+|++..+-..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA-RVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 368999986 44444444444 999999999999988865443 35567999999999986 3578999997443221
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
. .+....++..+.+.|+++|.++-.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 345566888888999999998754
No 97
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.4e-07 Score=86.78 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=71.5
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-cCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-DAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~~p~k~DiIVSEllGs 158 (359)
++||+||||| .+.+|.-+| +|++||..+..++.|+++++..|+.| |+++++|-..- ....++|.|+..- .
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I~Vta--a 147 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRIIVTA--A 147 (209)
T ss_pred CeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEEEEee--c
Confidence 6899999998 567777776 99999999999999999999999988 99999999884 4447899998521 1
Q ss_pred cCCCCChHHHHHHHhhccCCCeEE-Eccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGIS-IPSS 186 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~-IP~~ 186 (359)
-. ..|+.| .+.||+||++ ||-.
T Consensus 148 --a~-~vP~~L---l~QL~~gGrlv~PvG 170 (209)
T COG2518 148 --AP-EVPEAL---LDQLKPGGRLVIPVG 170 (209)
T ss_pred --cC-CCCHHH---HHhcccCCEEEEEEc
Confidence 11 234333 4579999985 4443
No 98
>PLN02672 methionine S-methyltransferase
Probab=98.60 E-value=1.8e-07 Score=103.82 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=56.7
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---------------CeEEEEeCccccccCC-
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE---------------KTVTIVSCDMRCWDAP- 145 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~---------------~~V~vi~~d~~~~~~p- 145 (359)
+|+|+|||+ ++.+.++.....+|+|+|+|+.|+..|++|++.|+.+ ++|+++++|+.+.-..
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~ 200 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN 200 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc
Confidence 689999998 6665555443349999999999999999999987542 5799999999875322
Q ss_pred -CCccEEEec
Q 039233 146 -EKADILVSE 154 (359)
Q Consensus 146 -~k~DiIVSE 154 (359)
.++|+|||+
T Consensus 201 ~~~fDlIVSN 210 (1082)
T PLN02672 201 NIELDRIVGC 210 (1082)
T ss_pred CCceEEEEEC
Confidence 369999995
No 99
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.60 E-value=1.5e-07 Score=86.82 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-------CCCCccEEE
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-------APEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-------~p~k~DiIV 152 (359)
.+|+++||++ ...+|...+.+.+|++||.|+..++.|++++++.|++++|+++.||..++- .+.++|+|+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 4689999976 223333334456999999999999999999999999999999999998851 135799999
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
++. +-..-++.++.+.++|+|||++|=...
T Consensus 127 ---iDa--~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 127 ---IDA--DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp ---EES--TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ---Ecc--cccchhhHHHHHhhhccCCeEEEEccc
Confidence 444 223356788888999999999876554
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.59 E-value=3e-07 Score=84.40 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=66.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEecccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs~ 159 (359)
++|+|+|||+ ++...++.+ . +|++||.+++++..|+++++.+++.+ |+++++|..+.. ...++|+|++.. .
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~I~~~~--~- 153 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDRILVTA--A- 153 (212)
T ss_pred CEEEEECCCccHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCEEEEcc--C-
Confidence 4799999998 443333333 3 89999999999999999998888866 999999987632 236899999632 1
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
...+.....+.|+|||+++
T Consensus 154 -----~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 154 -----APEIPRALLEQLKEGGILV 172 (212)
T ss_pred -----chhhhHHHHHhcCCCcEEE
Confidence 1223445568899999865
No 101
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.57 E-value=1.8e-07 Score=92.33 Aligned_cols=94 Identities=22% Similarity=0.232 Sum_probs=68.9
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs 158 (359)
++|+|+|||+ ++ .++.+.+.. +|+++|.|++|+..|+++... .+++++.+|++++..+ +.+|+||+. +.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~-~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~--~~ 187 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSA--GS 187 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEc--Ch
Confidence 3799999998 44 334444444 999999999999999887542 3588999999987654 579999973 32
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+-.-......|..+.+.|||||.++
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 2211123458889999999999964
No 102
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.57 E-value=3e-07 Score=85.37 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHHHhhc-ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-Cccccc-c--
Q 039233 72 QYQRAIGNALV-DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-CDMRCW-D-- 143 (359)
Q Consensus 72 ~Y~~AI~~~~~-d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~d~~~~-~-- 143 (359)
+|-..+.+... .+++++||++ -..+|..+..+.++++||.||+.+..|++++++.|+.++|+++. +|..+. +
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 34333333333 3689999976 23445555445699999999999999999999999999999999 588775 2
Q ss_pred CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccce
Q 039233 144 APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTS 189 (359)
Q Consensus 144 ~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~ 189 (359)
..+.+|+|+ ++. +-..-|+.|..+.++|+|||++|=...-.
T Consensus 129 ~~~~fDliF---IDa--dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 129 LDGSFDLVF---IDA--DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred cCCCccEEE---EeC--ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 468899998 554 33457899999999999999987665533
No 103
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=3e-07 Score=93.73 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=79.0
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEec
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVSE 154 (359)
++|+|+|||+ ...+|...+.+.+|+|+|.++.++..++++++.+|+.+ |+++++|++++. ..+++|.|+..
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEe
Confidence 4799999986 33455555544599999999999999999999998876 999999999874 23679999965
Q ss_pred cc----cccCCCC----------------ChHHHHHHHhhccCCCeEEEccccc
Q 039233 155 LL----GSFGDNE----------------LSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 155 ll----Gs~~~~E----------------l~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.- |.+.-+. +..++|..+.+.|||||+++=+.++
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 42 2222111 1246789999999999998754444
No 104
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=3e-07 Score=87.69 Aligned_cols=100 Identities=24% Similarity=0.234 Sum_probs=75.0
Q ss_pred ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEecc---
Q 039233 83 DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSEL--- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEl--- 155 (359)
++|+|+|||+ . ..+|+..+.+..|+|+|.++.++..++++++.++..+ |+++++|++++.. ..++|+|+...
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 4799999986 3 3445555544599999999999999999999988865 9999999988643 35699999653
Q ss_pred -ccccCCCC----------------ChHHHHHHHhhccCCCeEEE
Q 039233 156 -LGSFGDNE----------------LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 -lGs~~~~E----------------l~~e~L~~a~r~Lkp~Gi~I 183 (359)
.|.+.-+. +..++|..+.++|||||+++
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 22221110 22458888999999999988
No 105
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.56 E-value=5.1e-07 Score=90.66 Aligned_cols=94 Identities=24% Similarity=0.244 Sum_probs=69.9
Q ss_pred ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEec-cccc
Q 039233 83 DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSE-LLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSE-llGs 158 (359)
++|+|+|||+ ++. +|.+.| .+|+|||.|+++++.|+++.+ +. .|++..+|.+++ ++++|.|+|- .+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFEH 240 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchhh
Confidence 3689999987 554 444444 489999999999999999874 23 488999999876 4689999972 2222
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
++. +..+..+..+.+.|||||+++=+
T Consensus 241 vg~-~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 241 VGP-KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCh-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 322 22456888899999999997654
No 106
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.7e-07 Score=84.67 Aligned_cols=85 Identities=22% Similarity=0.229 Sum_probs=67.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc-ccccC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL-LGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl-lGs~~ 160 (359)
.|+|.|||| |+..|+-.||+ +|+|||.+++|++++++|..+ +.++|.++.+|++++.. ++|.+|.+. +|+-.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~~--~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFRG--KFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcCC--ccceEEECCCCcccc
Confidence 489999998 99999999999 999999999999999999987 66779999999999865 688888654 55532
Q ss_pred CCCChHHHHHHHhh
Q 039233 161 DNELSPECLDGAQR 174 (359)
Q Consensus 161 ~~El~~e~L~~a~r 174 (359)
-.. .-+.|+.|.+
T Consensus 123 rha-Dr~Fl~~Ale 135 (198)
T COG2263 123 RHA-DRPFLLKALE 135 (198)
T ss_pred ccC-CHHHHHHHHH
Confidence 222 2235555543
No 107
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.54 E-value=2e-07 Score=85.95 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=62.6
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---------CCCCccEE
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---------APEKADIL 151 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---------~p~k~DiI 151 (359)
+|+|+|||+ ++ .++++.|...+|+|||.++. ++..+ |+++++|+++.. ..+.+|+|
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 689999998 44 45566665569999999982 12334 999999999853 24689999
Q ss_pred EeccccccCCCC---------ChHHHHHHHhhccCCCeEEE
Q 039233 152 VSELLGSFGDNE---------LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 152 VSEllGs~~~~E---------l~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|+..-.+..+. +..+.|..+.+.|||||.++
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 997643332221 12347788899999999864
No 108
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.53 E-value=6.3e-07 Score=85.70 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=76.0
Q ss_pred ccCCcCChhH--HHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhcC--C-CCeEEEEeCccccc--cCCCCccEEEec
Q 039233 83 DRVPDEEASS--LTTAAEETG-RKLKIYAVEKNPNAVVTLHSLVRLEG--W-EKTVTIVSCDMRCW--DAPEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~ag-a~~~V~AVE~n~~a~~~a~~~~~~n~--~-~~~V~vi~~d~~~~--~~p~k~DiIVSE 154 (359)
++||++|+|+ ++..+.+.+ .. +|++||.++++++.|++.....+ + ..+++++.+|.+++ ..++++|+||+.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~-~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVE-KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcc-eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4799999987 554444444 44 89999999999999999875321 2 25799999998875 235789999987
Q ss_pred cccccCCCCC--hHHHHHHHhhccCCCeEEEcccc
Q 039233 155 LLGSFGDNEL--SPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 155 llGs~~~~El--~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
.....+..+. ..+.+..+.+.|+|||+++=+..
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6543332222 46788889999999999886533
No 109
>PLN02366 spermidine synthase
Probab=98.52 E-value=6.4e-07 Score=87.44 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=79.1
Q ss_pred ccCCcCChhH--HHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhc--CCC-CeEEEEeCcccccc--C-CCCccEEEe
Q 039233 83 DRVPDEEASS--LTTAAEET-GRKLKIYAVEKNPNAVVTLHSLVRLE--GWE-KTVTIVSCDMRCWD--A-PEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~a-ga~~~V~AVE~n~~a~~~a~~~~~~n--~~~-~~V~vi~~d~~~~~--~-p~k~DiIVS 153 (359)
.+||++|+|. ++...++. +.. +|+.||+++++++.|++.+... +++ .||+++.+|.+++- . .+++|+||+
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~-~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVE-QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCC-eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 4799999986 44444444 334 8999999999999999987531 343 48999999988752 2 468999998
Q ss_pred ccccccCC-CCC-hHHHHHHHhhccCCCeEEEccccceeee
Q 039233 154 ELLGSFGD-NEL-SPECLDGAQRFLKQDGISIPSSYTSFIQ 192 (359)
Q Consensus 154 EllGs~~~-~El-~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~ 192 (359)
.+.+..+. ..+ ..+.+..+.+.|+|||+++-+....+..
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 76554332 222 4678888899999999998776554443
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.51 E-value=5.4e-07 Score=88.46 Aligned_cols=91 Identities=21% Similarity=0.112 Sum_probs=68.2
Q ss_pred ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccc
Q 039233 83 DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs 158 (359)
++|+|+|||+ + ..+|...+.+.+|++||.++.+++.|+++++.++.. +|+++++|..+... ..++|+|++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~~~fD~Ii~~---- 156 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEFAPYDVIFVT---- 156 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccccCCccEEEEC----
Confidence 5799999998 3 345555654447999999999999999999988875 49999999876432 2579999962
Q ss_pred cCCCCChHHHHHHHhhccCCCeEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
.+ .++..+...+.|+|||++
T Consensus 157 ~g----~~~ip~~~~~~LkpgG~L 176 (322)
T PRK13943 157 VG----VDEVPETWFTQLKEGGRV 176 (322)
T ss_pred Cc----hHHhHHHHHHhcCCCCEE
Confidence 11 233445567889999974
No 111
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.51 E-value=2.4e-07 Score=87.06 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=66.9
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccccccC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~~ 160 (359)
+|+|+|||+ ++...++.| .+|+++|.|+.|++.|+++.. .+.++.+|++++..+ +.+|+|+|... +.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~--l~ 114 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLA--VQ 114 (251)
T ss_pred eEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECch--hh
Confidence 689999998 554444445 399999999999999887642 246789999987654 47999998532 11
Q ss_pred CCCChHHHHHHHhhccCCCeEEE
Q 039233 161 DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-.....+.|..+.+.|||||.++
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEE
Confidence 11224668888999999999976
No 112
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=4.2e-07 Score=92.89 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=77.3
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc----
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL---- 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl---- 155 (359)
++|+|+|||+ .+ .+|...+...+|+|+|.|+.+++.++++++..|.. +|+++.+|++++..++.+|+|+...
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCCCCC
Confidence 4799999987 33 34444443349999999999999999999988885 5999999999986667899999652
Q ss_pred ccccCCC---------C-------ChHHHHHHHhhccCCCeEEEccccc
Q 039233 156 LGSFGDN---------E-------LSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 156 lGs~~~~---------E-------l~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.|.+.-+ + +-.++|..+.++|||||+++=+.++
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1222111 0 1135788899999999998765443
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.51 E-value=1.6e-07 Score=86.73 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=65.6
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-cCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-DAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~~p~k~DiIVSEllGs 158 (359)
++|||+|||| .+.+|...|...+|++||.++..++.|+++++..+..+ |+++++|-..- ....++|.|++. .
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~apfD~I~v~---~ 149 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPEEAPFDRIIVT---A 149 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG-SEEEEEES---S
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccccCCCcCEEEEe---e
Confidence 5899999998 45666666766689999999999999999999887765 99999998763 333579999963 2
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.. . ..|+ .-.+.||+||++|
T Consensus 150 a~-~-~ip~---~l~~qL~~gGrLV 169 (209)
T PF01135_consen 150 AV-P-EIPE---ALLEQLKPGGRLV 169 (209)
T ss_dssp BB-S-S--H---HHHHTEEEEEEEE
T ss_pred cc-c-hHHH---HHHHhcCCCcEEE
Confidence 11 2 2332 3345799999853
No 114
>PRK01581 speE spermidine synthase; Validated
Probab=98.51 E-value=6e-07 Score=89.10 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=74.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH-----HhcCC-CCeEEEEeCccccc--cCCCCccEEE
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLV-----RLEGW-EKTVTIVSCDMRCW--DAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~-----~~n~~-~~~V~vi~~d~~~~--~~p~k~DiIV 152 (359)
.+||++|+|+ +++.+.+.+...+|++||.++++++.|++.. ....+ +.|++++.+|.+++ ...+++|+||
T Consensus 152 krVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVII 231 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVII 231 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEE
Confidence 4799999987 4444444433239999999999999999621 11223 57899999999986 3456899999
Q ss_pred eccccccC---CCCChHHHHHHHhhccCCCeEEEccc
Q 039233 153 SELLGSFG---DNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 153 SEllGs~~---~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+.+-+..+ ......|.+..+.+.|+|||+++=+.
T Consensus 232 vDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 232 IDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 88654322 11224678888899999999976553
No 115
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.51 E-value=5.5e-07 Score=90.38 Aligned_cols=95 Identities=27% Similarity=0.319 Sum_probs=75.0
Q ss_pred ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs 158 (359)
.+|+|.+||+ ++ .+|.++|++ +|+|+|+|+.|++.+++|++.|+..+ ++++++|++++-. .+++|+|+.+..|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~-~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~Gs 136 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVE-KVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFGS 136 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCCC
Confidence 3689998877 54 445567766 99999999999999999999999876 7899999987533 46799999766543
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
..+.|+.+.+.++++|++.=+
T Consensus 137 ------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 137 ------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------cHHHHHHHHHHhcCCCEEEEE
Confidence 245888888889999985544
No 116
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=6.2e-07 Score=84.44 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=78.4
Q ss_pred ccCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 83 DRVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
++|+|.|+|| |++..++ -|...+|+.+|+-++.+++|++|++..+++|+|++..+|+++...++.+|.||-.+..
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~-- 173 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPD-- 173 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCC--
Confidence 5899999998 5544443 4555699999999999999999999989999999999999998888899999954332
Q ss_pred CCCCChHHHHHHHhhccCCCeEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
--+.|.++.+.|||||.+
T Consensus 174 -----PW~~le~~~~~Lkpgg~~ 191 (256)
T COG2519 174 -----PWNVLEHVSDALKPGGVV 191 (256)
T ss_pred -----hHHHHHHHHHHhCCCcEE
Confidence 357999999999999874
No 117
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=4.5e-07 Score=94.51 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=75.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH-----hcCCC-CeEEEEeCccccc--cCCCCccEEE
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR-----LEGWE-KTVTIVSCDMRCW--DAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~-----~n~~~-~~V~vi~~d~~~~--~~p~k~DiIV 152 (359)
++|+|+|+|+ ++..+.+.+...+|++||+|+++++.|+++.. .+.++ .|++++.+|.+++ ..++++|+||
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi 378 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVII 378 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEE
Confidence 4799999987 55444455441399999999999999998421 11233 5899999999985 3457999999
Q ss_pred eccccccCC--CCC-hHHHHHHHhhccCCCeEEEcccc
Q 039233 153 SELLGSFGD--NEL-SPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 153 SEllGs~~~--~El-~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
++.-+.... ..+ ..|.+..+.+.|||||+++=+..
T Consensus 379 ~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 379 VDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 986543221 222 35678888999999999886654
No 118
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.1e-07 Score=87.11 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=83.3
Q ss_pred HhcCcccHHHHHHHHHHhhc----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 039233 63 FEKDSVKYIQYQRAIGNALV----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS 136 (359)
Q Consensus 63 f~~D~vry~~Y~~AI~~~~~----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~ 136 (359)
|-+|.+..- -+.+...+. .+|+|+|||. |+..+++.....+|+-+|.|..|++.||+|++.|+.++. .++.
T Consensus 138 FS~~~lD~G--S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~ 214 (300)
T COG2813 138 FSRDKLDKG--SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWA 214 (300)
T ss_pred CcCCCcChH--HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEE
Confidence 445544432 245555553 3689999986 665444444466999999999999999999999999885 7888
Q ss_pred CccccccCCCCccEEEeccccccC---CCCChHHHHHHHhhccCCCeE
Q 039233 137 CDMRCWDAPEKADILVSELLGSFG---DNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 137 ~d~~~~~~p~k~DiIVSEllGs~~---~~El~~e~L~~a~r~Lkp~Gi 181 (359)
+|+-+= ..+++|.|||+.-=.-| ...+..+++.+|.++|++||.
T Consensus 215 s~~~~~-v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 215 SNLYEP-VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred eccccc-ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 887663 33499999998632222 222344899999999999997
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.47 E-value=7.9e-07 Score=90.36 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=77.6
Q ss_pred ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccc
Q 039233 83 DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEll 156 (359)
++|+|+|||+ . ..+|...+ ..+|+|+|.++.++..+++++++.|...+++++.+|..... ..+++|.|+++..
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 4799999986 3 34455555 44999999999999999999998888766777888887654 2467999997642
Q ss_pred ----cccCCCC----------------ChHHHHHHHhhccCCCeEEEccccce
Q 039233 157 ----GSFGDNE----------------LSPECLDGAQRFLKQDGISIPSSYTS 189 (359)
Q Consensus 157 ----Gs~~~~E----------------l~~e~L~~a~r~Lkp~Gi~IP~~~t~ 189 (359)
|.+..+. +..++|..+.+.|||||.++=+.++.
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2222111 12468899999999999988555443
No 120
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.47 E-value=3.4e-07 Score=93.96 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=71.3
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCC-CCccEEEecccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAP-EKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p-~k~DiIVSEllG 157 (359)
++|+|+|||+ ++...++.+ + +|+|||.++.|+..+++. ++...+++++++|+.+. ..+ +++|+|++.+.-
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~-~-~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA-G-QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC-C-EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 3689999998 544444433 3 999999999998776553 33445699999999753 333 579999997654
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
....++...++|..+.+.|||||+++-.
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4444444567888999999999998654
No 121
>PTZ00146 fibrillarin; Provisional
Probab=98.47 E-value=6.9e-07 Score=86.31 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=64.7
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccEEEeccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~DiIVSEll 156 (359)
+|||+|||+ .+.+|...|...+|||||.++.|.+.+.+..+. ..+|..+.+|++.-. +.+.+|+|++...
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 689999987 556777776555999999999766555554432 134888999997532 3467999998652
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.-.....++..+.++|||+|.++=
T Consensus 212 ----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 ----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ----CcchHHHHHHHHHHhccCCCEEEE
Confidence 111112244578899999998553
No 122
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.46 E-value=1e-06 Score=80.93 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=82.5
Q ss_pred cCcccHHHHHHHHHHh---h-cccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc
Q 039233 65 KDSVKYIQYQRAIGNA---L-VDRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD 138 (359)
Q Consensus 65 ~D~vry~~Y~~AI~~~---~-~d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d 138 (359)
.|++|.+...+++... . ..+|+|+|||+ ++..+++.+ .+|+++|.|+.++..++++...++.. +++++.+|
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d 101 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTS 101 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCC
Confidence 3666776666677653 2 23689999987 554445555 37999999999999999988765543 58999999
Q ss_pred cccccC--CCCccEEEec-cccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 139 MRCWDA--PEKADILVSE-LLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 139 ~~~~~~--p~k~DiIVSE-llGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+.++.. +.++|+|++. .+... +...++|..+.+.|++||.++-
T Consensus 102 ~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 102 VEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred HHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 988743 3689999863 23332 2345688888999999998663
No 123
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.45 E-value=8.5e-07 Score=84.01 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=76.5
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cC------CCCccE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DA------PEKADI 150 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~------p~k~Di 150 (359)
.+++++||++ +.++ ...+...+|++||.+++.+..|++++++.|+.++|+++.||..+. .+ .+++|+
T Consensus 81 k~iLEiGT~~GySal~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATA-LALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CEEEEEeChhhHHHHHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 4689999875 3333 223445699999999999999999999999999999999999885 11 358999
Q ss_pred EEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 151 LVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 151 IVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
|+ ++.- .+.-++.++.+.+.|++||++|=..
T Consensus 160 iF---iDad--K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IF---VDAD--KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EE---ecCC--HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99 4442 3345778888889999999987543
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=8.4e-07 Score=90.26 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=72.7
Q ss_pred ccCCcCChhH--HHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccc
Q 039233 83 DRVPDEEASS--LTTA-AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~-A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEll 156 (359)
++|+|+|||+ .+.. |.+.+. .+|+|+|.|+.++..++++++.+|.. ++++++|+++.. .++++|.|++..-
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEECCC
Confidence 4799999987 4433 444432 49999999999999999999987764 789999998753 2467999997642
Q ss_pred ----cccCCC-C---------------ChHHHHHHHhhccCCCeEEEccc
Q 039233 157 ----GSFGDN-E---------------LSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 157 ----Gs~~~~-E---------------l~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
|.+..+ + +..++|..+.+.|||||.++=+.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 221111 0 11357888899999999987433
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.44 E-value=9.8e-07 Score=89.94 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=78.7
Q ss_pred ccCCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEeccc-
Q 039233 83 DRVPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELL- 156 (359)
Q Consensus 83 d~v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEll- 156 (359)
++|+|+|||+ . ..+|...+...+|+|+|.|+.++..+++++++.|..+ |+++++|++++. .++++|.|+...-
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCC
Confidence 3799999987 3 3445555444599999999999999999999888865 999999999874 4578999997532
Q ss_pred cccCCCC-------------------ChHHHHHHHhhccCCCeEEEccccc
Q 039233 157 GSFGDNE-------------------LSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 157 Gs~~~~E-------------------l~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.++|.-. +-.++|..+.+.|||||+++=+.++
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1122111 1245688889999999998766665
No 126
>PHA03411 putative methyltransferase; Provisional
Probab=98.42 E-value=6.2e-07 Score=85.91 Aligned_cols=67 Identities=24% Similarity=0.250 Sum_probs=52.7
Q ss_pred cccCCcCChhH--HHHHH-HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc
Q 039233 82 VDRVPDEEASS--LTTAA-EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL 155 (359)
Q Consensus 82 ~d~v~D~g~Gt--l~~~A-~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl 155 (359)
.++|+|+|||+ ++..+ .+.+. .+|++||.|+.|+..|+++. .+++++++|++++...+++|+|||..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNP 134 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNP 134 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcC
Confidence 35799999987 54444 33333 49999999999999988753 24899999999987677999999953
No 127
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.40 E-value=2.2e-07 Score=87.67 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=72.2
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-----eEEEEeCccccccCCCCccEEEe-cc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEK-----TVTIVSCDMRCWDAPEKADILVS-EL 155 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~-----~V~vi~~d~~~~~~p~k~DiIVS-El 155 (359)
+++|+|||+ ||.=.+|.| ..|.|||.+++|++.|++..+.+...+ |+...+.|++.... ++|.||+ |.
T Consensus 92 ~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~--~fDaVvcsev 167 (282)
T KOG1270|consen 92 KILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG--KFDAVVCSEV 167 (282)
T ss_pred eEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc--ccceeeeHHH
Confidence 489999998 888778888 389999999999999999965544433 58888889888654 5999995 54
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+-... ...+.+.+..+.|||||.++
T Consensus 168 leHV~---dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 168 LEHVK---DPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred HHHHh---CHHHHHHHHHHHhCCCCceE
Confidence 43322 24667888889999999844
No 128
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.40 E-value=1.8e-06 Score=82.51 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHhhc-------ccCCcCChhH--HH-HHHHHcCC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Q 039233 68 VKYIQYQRAIGNALV-------DRVPDEEASS--LT-TAAEETGR--KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 68 vry~~Y~~AI~~~~~-------d~v~D~g~Gt--l~-~~A~~aga--~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi 135 (359)
-.|....++|...+. ++|+|+|||+ ++ .++...+. ...|+|+|.|+.|+..|+++. ..++++
T Consensus 65 g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~ 138 (272)
T PRK11088 65 GHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFC 138 (272)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEE
Confidence 345555566544332 3589999998 33 34433321 137999999999999987642 238889
Q ss_pred eCccccccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 136 SCDMRCWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 136 ~~d~~~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+|+.++..+ +.+|+|+|-. .+..+....|.|||||.+|
T Consensus 139 ~~d~~~lp~~~~sfD~I~~~~---------~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 139 VASSHRLPFADQSLDAIIRIY---------APCKAEELARVVKPGGIVI 178 (272)
T ss_pred EeecccCCCcCCceeEEEEec---------CCCCHHHHHhhccCCCEEE
Confidence 9999887654 5799999721 1334566788999999976
No 129
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.38 E-value=7.3e-07 Score=89.50 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=85.8
Q ss_pred ccCCcCC--hhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CeEEEEeCcccccc-----CCCCccEEEec
Q 039233 83 DRVPDEE--ASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE-KTVTIVSCDMRCWD-----APEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g--~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~-~~V~vi~~d~~~~~-----~p~k~DiIVSE 154 (359)
++|||+= ||..|..|+.+||+ +|+.||+|..++..|++|++.||+. +++.+|.+|+-++- -.+++|+||-.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~-~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCC-ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 3588875 46689999999998 9999999999999999999999985 67999999998872 23589999954
Q ss_pred cccccCCC---C-----ChHHHHHHHhhccCCCeEEEccccceeeee
Q 039233 155 LLGSFGDN---E-----LSPECLDGAQRFLKQDGISIPSSYTSFIQP 193 (359)
Q Consensus 155 llGs~~~~---E-----l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~p 193 (359)
.- +|.-+ + .-.++++.+.+.|+|||+++=++++..+.+
T Consensus 298 PP-sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 298 PP-SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred Cc-ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 32 23311 1 234567778899999999998887766543
No 130
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.38 E-value=1.3e-06 Score=80.86 Aligned_cols=95 Identities=13% Similarity=0.194 Sum_probs=71.3
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEec-cccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSE-LLGS 158 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSE-llGs 158 (359)
+|+|+|||+ ++...++.| .+|+++|.|+.++..|+++....+. +++++.+|+.++. ..+++|+|++. .+..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 589999987 444444555 3899999999999999998876544 5888999998874 45789999862 2333
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.. ...++|..+.++|+|||.++-.
T Consensus 127 ~~---~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 127 VP---DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 22 2456889999999999997743
No 131
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.36 E-value=4.1e-07 Score=87.82 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=81.6
Q ss_pred HHHHHhhcc-cCCcCC--hhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CeEEEEeCccccc----cCCC
Q 039233 75 RAIGNALVD-RVPDEE--ASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE-KTVTIVSCDMRCW----DAPE 146 (359)
Q Consensus 75 ~AI~~~~~d-~v~D~g--~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~-~~V~vi~~d~~~~----~~p~ 146 (359)
+.|.+..++ +|||+= +|..+++|+++||+ +|+.||.|..|++.|++|.+.|++. ++++++.+|+.++ .-.+
T Consensus 116 ~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~-~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~ 194 (286)
T PF10672_consen 116 KWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAK-EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGG 194 (286)
T ss_dssp HHHHHHCTTCEEEEET-TTTHHHHHHHHTTES-EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT
T ss_pred HHHHHHcCCCceEEecCCCCHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCC
Confidence 445555554 688875 46688999999998 9999999999999999999999987 7899999999874 1246
Q ss_pred CccEEEeccc----cccCCCCChHHHHHHHhhccCCCeEEEccccceeee
Q 039233 147 KADILVSELL----GSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQ 192 (359)
Q Consensus 147 k~DiIVSEll----Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~ 192 (359)
++|+||...- |.+.....-.+++..+.++|+|||+++=++++..+.
T Consensus 195 ~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 195 RFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp -EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 8999997643 112211123456777889999999988666644433
No 132
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.34 E-value=2.4e-06 Score=76.93 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=70.1
Q ss_pred HHHHHhcCcccHHHHH--HHHHHhh---c--ccCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 039233 59 TYETFEKDSVKYIQYQ--RAIGNAL---V--DRVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGW 128 (359)
Q Consensus 59 ~Ye~f~~D~vry~~Y~--~AI~~~~---~--d~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~ 128 (359)
.|...-.|+.|-..|- .++.+.+ + ++|+|+|||+ ++ .++.+.+...+|+|||.|+.+ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~ 71 (188)
T TIGR00438 3 YYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI 71 (188)
T ss_pred HHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC
Confidence 3555555665544432 2233322 1 3689999988 44 344454333489999999953 12
Q ss_pred CCeEEEEeCcccccc---------CCCCccEEEeccccc-cCC---C-----CChHHHHHHHhhccCCCeEEE
Q 039233 129 EKTVTIVSCDMRCWD---------APEKADILVSELLGS-FGD---N-----ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 129 ~~~V~vi~~d~~~~~---------~p~k~DiIVSEllGs-~~~---~-----El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..++++++|+.+.. ..+++|+|++..... .+. + +...++|..+.+.|+|||.++
T Consensus 72 -~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 143 (188)
T TIGR00438 72 -ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV 143 (188)
T ss_pred -CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 24889999998743 245799999854211 111 1 112567888899999999855
No 133
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.32 E-value=2.6e-06 Score=85.37 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=73.6
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc---cCCCCccEEEecccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW---DAPEKADILVSELLG 157 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~---~~p~k~DiIVSEllG 157 (359)
.++|+|||+ +..+|.+. ....++|||+++.++..|.+++..++.++ |.++++|++++ -.+..+|.|+...-+
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 689999998 44555554 44599999999999999999999888877 99999999875 234679999864221
Q ss_pred ccCC----CCChHHHHHHHhhccCCCeEEE
Q 039233 158 SFGD----NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s~~~----~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-.-- .-..++.|..+.|.|+|||.+.
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 1100 0123678899999999999843
No 134
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.28 E-value=5.1e-06 Score=76.46 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=66.2
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEec-cccccC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSE-LLGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSE-llGs~~ 160 (359)
+|+|+|||+ ++...++.+ .+|+++|.|++|+..|+++....+..++|+++.+|+... .+.+|+|++- .+-.+.
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYP 141 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCC
Confidence 689999998 555445555 379999999999999999988777777899999996542 4679999962 111222
Q ss_pred CCCChHHHHHHHhhccCCCeEE
Q 039233 161 DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
.+....++....+.+++++++
T Consensus 142 -~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 142 -QEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -HHHHHHHHHHHHhhcCCeEEE
Confidence 223445666666666555543
No 135
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.27 E-value=5.8e-06 Score=80.80 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=58.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEeccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEll 156 (359)
++|+|+|||+ ++..+++.| + +|+|||.|+.|++.|+++++.++. ++|+++++|+.++. ...++|+||...-
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~-~-~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG-M-QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC-C-EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4799999987 666666655 4 999999999999999999999988 46999999999864 2357999997654
No 136
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.27 E-value=1.9e-06 Score=74.10 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHhhc-----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc
Q 039233 69 KYIQYQRAIGNALV-----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC 141 (359)
Q Consensus 69 ry~~Y~~AI~~~~~-----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~ 141 (359)
+++.+.+.|.+... .+|+|+|||+ ++...++.|. +|+++|.|+.++.. .............
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 5 RYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----------RNVVFDNFDAQDP 72 (161)
T ss_dssp CCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----------TTSEEEEEECHTH
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----------hhhhhhhhhhhhh
Confidence 45556666665542 3699999997 5544466663 99999999988765 1112222212222
Q ss_pred ccCCCCccEEEec-cccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 142 WDAPEKADILVSE-LLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 142 ~~~p~k~DiIVSE-llGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
...++++|+|+|. .+..+. ...+.|....+.|||||.++
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEE
Confidence 3356799999973 333333 25678899999999999854
No 137
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.27 E-value=1.8e-06 Score=78.15 Aligned_cols=99 Identities=29% Similarity=0.292 Sum_probs=72.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEeccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVSEll 156 (359)
++||+=+|| +..-|..-||+ +|+.||+|+.++..+++|++.-+..++++++.+|....- ..+++|+|+ +
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf---l 120 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF---L 120 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE---E
T ss_pred eEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE---E
Confidence 578985554 88778888998 999999999999999999999888889999999976531 357999998 4
Q ss_pred cccCCCCC-hHHHHHHHh--hccCCCeEEEccc
Q 039233 157 GSFGDNEL-SPECLDGAQ--RFLKQDGISIPSS 186 (359)
Q Consensus 157 Gs~~~~El-~~e~L~~a~--r~Lkp~Gi~IP~~ 186 (359)
+---..+. .+++|.... .+|+++|++|=..
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 43222233 367777764 7999999977554
No 138
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.26 E-value=2.8e-06 Score=76.45 Aligned_cols=105 Identities=20% Similarity=0.252 Sum_probs=77.5
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-ccCCCCccEEEec-ccc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WDAPEKADILVSE-LLG 157 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~~p~k~DiIVSE-llG 157 (359)
++|||+|||. |-.+|. -|-..+..+||-++.|++.|+.+.+++++.+.|++-+.|+.+ -..+.++|+|.-- +++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~-egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAK-EGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHH-hcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 4899999987 444444 445557999999999999999999999999999999999988 3456899999731 111
Q ss_pred ccC-----CCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 158 SFG-----DNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 158 s~~-----~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.+. .++...--++.+.+.|+|||+++-.+|.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 111 1122122467778999999998866653
No 139
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.26 E-value=5.7e-06 Score=77.99 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=73.3
Q ss_pred cCCcCChhH--HH-HHHHHcCC-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCe--EEEEeCccccccCC-CCccEEE
Q 039233 84 RVPDEEASS--LT-TAAEETGR-----KLKIYAVEKNPNAVVTLHSLVRLEGWEKT--VTIVSCDMRCWDAP-EKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga-----~~~V~AVE~n~~a~~~a~~~~~~n~~~~~--V~vi~~d~~~~~~p-~k~DiIV 152 (359)
+++|+++|| ++ .....++. ..+|+.+|.||+|+..++++.++-++... +.++.+|.+++..| ..+|+.+
T Consensus 103 ~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yT 182 (296)
T KOG1540|consen 103 KVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYT 182 (296)
T ss_pred eEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEE
Confidence 579999988 43 23333333 14999999999999999999877677655 99999999999866 5789988
Q ss_pred eccccccC--CCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFG--DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~--~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+ .|| .--.....|..|.|-|||||++.
T Consensus 183 i----afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 183 I----AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred E----ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 5 233 22245678899999999999865
No 140
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.26 E-value=3.4e-06 Score=78.15 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CCeEEEEeCccccccC--
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGW--------------EKTVTIVSCDMRCWDA-- 144 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~--------------~~~V~vi~~d~~~~~~-- 144 (359)
.+|||+|||. -+.+.++.| ..|+|||.|+.|++.|.+. ++. ..+|+++.+|+.++..
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4799999998 333333456 5899999999999876432 222 3469999999999864
Q ss_pred CCCccEEEeccccccC--CCCChHHHHHHHhhccCCCeEE
Q 039233 145 PEKADILVSELLGSFG--DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 145 p~k~DiIVSEllGs~~--~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
.+++|.|+- .+++. ..+.-+..+....++|||||.+
T Consensus 111 ~~~fD~i~D--~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 111 LGPVDAVYD--RAALIALPEEMRQRYAAHLLALLPPGARQ 148 (213)
T ss_pred CCCcCEEEe--chhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence 357899884 23221 2222234567778999999963
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.25 E-value=3.7e-06 Score=79.63 Aligned_cols=93 Identities=23% Similarity=0.250 Sum_probs=70.7
Q ss_pred ccCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc--c--cCCCCccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC--W--DAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~--~--~~p~k~DiIVSEl 155 (359)
++|++.|+|+ |+.+.++ .|...+||..|.+++-++.|+++++..++.+.|++.++|+.+ + ++...+|.|+-.+
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDl 121 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDL 121 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeC
Confidence 4799999987 6655444 355669999999999999999999999999999999999975 3 2346799999543
Q ss_pred ccccCCCCChHHHHHHHhhcc-CCCeEE
Q 039233 156 LGSFGDNELSPECLDGAQRFL-KQDGIS 182 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~L-kp~Gi~ 182 (359)
-. --++|.++.+.| |+||.+
T Consensus 122 p~-------Pw~~i~~~~~~L~~~gG~i 142 (247)
T PF08704_consen 122 PD-------PWEAIPHAKRALKKPGGRI 142 (247)
T ss_dssp SS-------GGGGHHHHHHHE-EEEEEE
T ss_pred CC-------HHHHHHHHHHHHhcCCceE
Confidence 32 235899999999 899974
No 142
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.25 E-value=6.1e-06 Score=80.86 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEeCccccccCCCCccEEEecccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEG----WEKTVTIVSCDMRCWDAPEKADILVSELLG 157 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~----~~~~V~vi~~d~~~~~~p~k~DiIVSEllG 157 (359)
+|+|+|||+ ++...++.| .+|+|+|.|+.|++.|+++.+..+ -..++++..+|++++ ++++|+|+| ++
T Consensus 147 ~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~--~~ 220 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTC--LD 220 (315)
T ss_pred EEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEE--cC
Confidence 699999998 665555656 389999999999999999987532 124688999998765 578999997 33
Q ss_pred ccC--CCCChHHHHHHHhhccCCCeEEE
Q 039233 158 SFG--DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s~~--~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+. ..+...+.+....+ +.++|++|
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 321 12222334444443 46777766
No 143
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.24 E-value=2e-06 Score=84.44 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=55.7
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCeEEEEe-Ccccccc-----CCCCccEEEe
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-GWEKTVTIVS-CDMRCWD-----APEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-~~~~~V~vi~-~d~~~~~-----~p~k~DiIVS 153 (359)
+++|+|||+ ..++|++.. ..+|+|+|+++.|++.|++|++.| ++.++|+++. .|..++. ..+++|+|||
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred eEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 589999997 335555543 359999999999999999999999 8999999975 3444321 3468999999
Q ss_pred cc
Q 039233 154 EL 155 (359)
Q Consensus 154 El 155 (359)
+.
T Consensus 196 NP 197 (321)
T PRK11727 196 NP 197 (321)
T ss_pred CC
Confidence 75
No 144
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.24 E-value=6.9e-06 Score=82.23 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=69.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC--CCCccEEEeccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA--PEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~--p~k~DiIVSEllGs 158 (359)
.+|+|++||+ ++..++..| + +|+|||+|+.|++.|++|.+.|+.. +++++.+|++++.. ..++|+||.+.-=.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~-~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-T-QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-C-eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 3689999987 666555544 4 8999999999999999999999886 69999999987532 24699999765522
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+.+++++...+ ++|+++++
T Consensus 312 ----G~~~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 312 ----GIGKELCDYLSQ-MAPKFILY 331 (374)
T ss_pred ----CCcHHHHHHHHh-cCCCeEEE
Confidence 234556666543 67877643
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.23 E-value=2.5e-06 Score=75.61 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=54.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC-CccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE-KADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~-k~DiIVSEl 155 (359)
+.++|+|||+ ++..+++.+ . +|+|||.|+.++..++++... .++++++++|+.++..+. ++|.|+|++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~-~-~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA-A-RVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC-C-eEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCEEEECC
Confidence 4789999987 665544443 3 999999999999999988753 357999999999987665 489999864
No 146
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.22 E-value=2.5e-06 Score=82.80 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=57.2
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl 155 (359)
+.|+|+|||+ ++...++.+ + +|+|||+|+.++..|++++...+..++++++++|+.++..+ ++|+||+++
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~-~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~-~~d~VvaNl 109 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLA-K-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP-YFDVCVANV 109 (294)
T ss_pred CEEEEecCchHHHHHHHHHhC-C-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc-ccCEEEecC
Confidence 5799999987 555444443 3 89999999999999999988766567899999999988764 689999864
No 147
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.21 E-value=3.7e-06 Score=78.18 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=65.2
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CCeEEEEeCccccccCC-
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGW--------------EKTVTIVSCDMRCWDAP- 145 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~--------------~~~V~vi~~d~~~~~~p- 145 (359)
.+|||+|||. -+.+.++.| .+|+|||.|+.|++.+.. ++++ ..+|+++++|+.++...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4799999997 333334456 589999999999987643 2232 35799999999998532
Q ss_pred -CCccEEEeccccccCCCCChHHHHHHHhhccCCCeE
Q 039233 146 -EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 146 -~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
.++|.|+-..+-.....+.-.+.+....++|||||+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 478998853322222333345567788899999985
No 148
>PLN02823 spermine synthase
Probab=98.20 E-value=9.1e-06 Score=80.30 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=72.8
Q ss_pred cCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcC--C-CCeEEEEeCccccc--cCCCCccEEEecc
Q 039233 84 RVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEG--W-EKTVTIVSCDMRCW--DAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~--~-~~~V~vi~~d~~~~--~~p~k~DiIVSEl 155 (359)
+||-+|.|. +.+.+.+ .+.. +|.+||+++++++.|++....++ + +.|++++.+|.+++ ...+++|+|+.++
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~~~-~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~ 184 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKTVE-KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL 184 (336)
T ss_pred EEEEECCCchHHHHHHHhCCCCC-eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence 578888765 5554444 3455 89999999999999998875322 3 46899999999996 3457899999886
Q ss_pred ccccC---CCC-ChHHHHH-HHhhccCCCeEEEcc
Q 039233 156 LGSFG---DNE-LSPECLD-GAQRFLKQDGISIPS 185 (359)
Q Consensus 156 lGs~~---~~E-l~~e~L~-~a~r~Lkp~Gi~IP~ 185 (359)
.+... ... ...|.+. .+.+.|+|||+++=+
T Consensus 185 ~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 185 ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 54321 111 2356776 778999999997643
No 149
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.19 E-value=5.2e-06 Score=76.33 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=58.1
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
++|+|+|||+ +..++...+. .+|+|||.|++|++.|+++.. +++++++|+.+...+.++|+|++..+=..
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECChhhh
Confidence 3699999998 3344444443 499999999999999987532 37788999988434568999997322112
Q ss_pred CCCCChHHHHHHHhhcc
Q 039233 160 GDNELSPECLDGAQRFL 176 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~L 176 (359)
.+.+...+.+....|.+
T Consensus 118 l~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS 134 (204)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 22233344555556655
No 150
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.17 E-value=3.1e-06 Score=78.04 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=72.9
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+.|.|+|||+ --.++.|-... .|++||.|++|++.|++. +-| +++..+|+++|+++.+.|+|+|+-.=-.
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~p~~~~dllfaNAvlqW 104 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWKPEQPTDLLFANAVLQW 104 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcCCCCccchhhhhhhhhh
Confidence 3689999997 44778888655 999999999999888665 334 8899999999999999999999755444
Q ss_pred CCCCChHHHHHHHhhccCCCeEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+.. -++.|..-...|.|||.+
T Consensus 105 lpd--H~~ll~rL~~~L~Pgg~L 125 (257)
T COG4106 105 LPD--HPELLPRLVSQLAPGGVL 125 (257)
T ss_pred ccc--cHHHHHHHHHhhCCCceE
Confidence 422 356777777889999985
No 151
>PRK06202 hypothetical protein; Provisional
Probab=98.16 E-value=4.3e-06 Score=77.75 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=60.6
Q ss_pred cCCcCChhH--HHH-HH---HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEecc-
Q 039233 84 RVPDEEASS--LTT-AA---EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSEL- 155 (359)
Q Consensus 84 ~v~D~g~Gt--l~~-~A---~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEl- 155 (359)
+|+|+|||+ ++. ++ .+.|...+|+|||.|+.|++.|+++...+ ++++..++...+. .++++|+|+|..
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEEECCe
Confidence 689999998 332 22 23455569999999999999998875432 2455555555443 346899999843
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
+-.+.+. ...++|..+.+.++ +++
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~-~~~ 162 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR-RLV 162 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC-eeE
Confidence 2233332 24568888888887 444
No 152
>PRK05785 hypothetical protein; Provisional
Probab=98.15 E-value=1e-05 Score=75.39 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=60.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEecccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSF 159 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~ 159 (359)
++|||+|||| ++...++.+ ..+|+|||.|++|++.|+++ ...+++|++++..+ +.+|+|+|-. ++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--~l 120 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--AL 120 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC--hh
Confidence 4799999998 444433332 24999999999999998763 13478999988654 5799999832 11
Q ss_pred CCCCChHHHHHHHhhccCCCe
Q 039233 160 GDNELSPECLDGAQRFLKQDG 180 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~G 180 (359)
-.-+.....|....|.|||.+
T Consensus 121 ~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 121 HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hccCCHHHHHHHHHHHhcCce
Confidence 111234568888899999954
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.13 E-value=1.8e-05 Score=80.97 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=66.5
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----C-CCCccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----A-PEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~-p~k~DiIVSEl 155 (359)
++|+|+|||+ ++.++++.+ + +|+|||.|+.|++.|++|.+.++.++ ++++++|+.+.- . ..++|+||++.
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~-~-~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA-A-EVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 4799999987 555555444 3 99999999999999999999888865 999999998642 1 35699999764
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
-=. | +.+.+....+ |+|++++
T Consensus 376 Pr~-g----~~~~~~~l~~-~~~~~iv 396 (443)
T PRK13168 376 PRA-G----AAEVMQALAK-LGPKRIV 396 (443)
T ss_pred CCc-C----hHHHHHHHHh-cCCCeEE
Confidence 321 1 3455644444 5777763
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.12 E-value=2.2e-05 Score=79.87 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----C-CCCccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----A-PEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~-p~k~DiIVSEl 155 (359)
++|+|+|||+ ++..+++. ++ +|+|||.|+.|++.|++|++.|+.. +|+++++|+.++- . ...+|+||...
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~-~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AK-SVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CC-EEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4799999987 55444443 34 8999999999999999999998885 4999999998741 1 24689999644
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
--. .+.+++|+...+ |+|++++
T Consensus 371 Pr~----G~~~~~l~~l~~-l~~~~iv 392 (431)
T TIGR00479 371 PRK----GCAAEVLRTIIE-LKPERIV 392 (431)
T ss_pred CCC----CCCHHHHHHHHh-cCCCEEE
Confidence 321 124566665443 7887764
No 155
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.11 E-value=1.9e-06 Score=80.19 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHhhc------ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CeEEEE
Q 039233 69 KYIQYQRAIGNALV------DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE-----KTVTIV 135 (359)
Q Consensus 69 ry~~Y~~AI~~~~~------d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~-----~~V~vi 135 (359)
.++-|++|+.+.-. ++|+|..+|- .+..|.+.||. +|+.|||||+.++.|.- |.|+ ..|++|
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~l----NPwSr~l~~~~i~ii 190 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKL----NPWSRELFEIAIKII 190 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCc-EEEEEeeCCCeEEeecc----CCCCccccccccEEe
Confidence 35568888877521 4789987765 77888899987 99999999998877654 5564 468999
Q ss_pred eCcccccc--C-CCCccEEEeccccccCCCCChH-HHHHHHhhccCCCeEEEcc
Q 039233 136 SCDMRCWD--A-PEKADILVSELLGSFGDNELSP-ECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 136 ~~d~~~~~--~-p~k~DiIVSEllGs~~~~El~~-e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.||+.++- + .+.+|+||...--...-.||-. |..+...|.|||||.++=.
T Consensus 191 lGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 191 LGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred cccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 99999863 3 3569999986543323336544 4556678999999997643
No 156
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=9e-06 Score=74.57 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhc--------ccCCcCChhHHHHH---HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEE-EEeC
Q 039233 70 YIQYQRAIGNALV--------DRVPDEEASSLTTA---AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVT-IVSC 137 (359)
Q Consensus 70 y~~Y~~AI~~~~~--------d~v~D~g~Gtl~~~---A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~-vi~~ 137 (359)
.+.|++-|...+. .-||++||||-..+ -.+ ...+|+.+|-||+|-+.|.+.++++.-.. ++ ++.+
T Consensus 57 ~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva 133 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVA 133 (252)
T ss_pred HHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEee
Confidence 3446666665532 13699999983222 111 22489999999999999999999874444 66 9999
Q ss_pred cccccc--CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 138 DMRCWD--APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 138 d~~~~~--~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+.+++. ...++|.||+-+.=+ ..|...+.|....|.|+|||++|
T Consensus 134 ~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 134 DGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred chhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCCCcEEE
Confidence 999976 457899999744333 23446679999999999999964
No 157
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.07 E-value=2.1e-05 Score=75.56 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=83.8
Q ss_pred cCCcCChhH---HHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccE-EEec
Q 039233 84 RVPDEEASS---LTTAAEETGR-KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADI-LVSE 154 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga-~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~Di-IVSE 154 (359)
+|+|+-||. +.-+..+... ...|.-.|.|+..++..++.++..|+++.+++.++|.-+-+ +..+.++ |||-
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 579998886 5555444443 35899999999999999999999999998899999998853 3345676 5588
Q ss_pred cccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 155 LLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 155 llGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
+...|.||++..+.|.+..+.|.|||.+|=.
T Consensus 218 L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 218 LYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred chhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 8888999999999999999999999998743
No 158
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.06 E-value=7.6e-06 Score=77.74 Aligned_cols=68 Identities=28% Similarity=0.301 Sum_probs=54.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEll 156 (359)
+.|+|+|||+ ++...++.+ . +|+|||.++.++..+++++.. .++|+++++|..++..+ .+|.|||++-
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~-~-~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~-~~d~Vv~NlP 100 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRA-K-KVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP-EFNKVVSNLP 100 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhC-C-EEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch-hceEEEEcCC
Confidence 4789999987 655544443 3 899999999999999988753 35699999999998765 5899999865
No 159
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.06 E-value=1.3e-05 Score=80.37 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=72.5
Q ss_pred cCCcCChhH--HH-HHHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEecccc
Q 039233 84 RVPDEEASS--LT-TAAEET-GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSELLG 157 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~a-ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEllG 157 (359)
+|+|.-||| ++ .+|.+. |++ +|+|+|+|+.|++.+++|++.|+.++ ++++++|...+- ...++|+|.- +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~-~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdl---D 121 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVR-EVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDI---D 121 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEe---C
Confidence 588987666 54 444553 777 99999999999999999999998764 999999999873 2368999995 4
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.+|. ..+.|+.+-+.++++|++.=+
T Consensus 122 PfGs---~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PFGT---PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCC---cHHHHHHHHHhcccCCEEEEE
Confidence 4442 125889999999999985433
No 160
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.03 E-value=3e-05 Score=75.09 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=76.9
Q ss_pred hcc-cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccc
Q 039233 81 LVD-RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLG 157 (359)
Q Consensus 81 ~~d-~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllG 157 (359)
+++ +|+|||||. -+.-++++||+ .|+|||-++.-....+...+--|...++..+.--++++...+.+|+|+| ||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~--MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFS--MG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEE--ee
Confidence 444 599999987 55555677888 9999999986554433333332334456666556676655678999998 88
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEE------Eccccceeeeecc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGIS------IPSSYTSFIQPVT 195 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~------IP~~~t~~~~pi~ 195 (359)
-+--...-.+.|......|++||.+ |+.....-+.|-.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~ 234 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED 234 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC
Confidence 7543332345778888899999984 5777776666653
No 161
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.01 E-value=1.9e-05 Score=74.74 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=73.0
Q ss_pred cCCcCC--hhHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhcC--C-CCeEEEEeCccccc--cCCC-CccEEEec
Q 039233 84 RVPDEE--ASSLTTAAEETG-RKLKIYAVEKNPNAVVTLHSLVRLEG--W-EKTVTIVSCDMRCW--DAPE-KADILVSE 154 (359)
Q Consensus 84 ~v~D~g--~Gtl~~~A~~ag-a~~~V~AVE~n~~a~~~a~~~~~~n~--~-~~~V~vi~~d~~~~--~~p~-k~DiIVSE 154 (359)
+||=+| .|.++....+.. .+ +|++||.+|.+++.|++-..... + +.|++++.+|.+.+ +..+ ++|+||.+
T Consensus 79 ~VLiiGgG~G~~~~ell~~~~~~-~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D 157 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHPPVE-SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVD 157 (246)
T ss_dssp EEEEEESTTSHHHHHHTTSTT-S-EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEE
T ss_pred ceEEEcCCChhhhhhhhhcCCcc-eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEe
Confidence 455554 455555555543 34 99999999999999998765422 2 36899999999996 3455 89999998
Q ss_pred cccccC--CCCChHHHHHHHhhccCCCeEEEccc
Q 039233 155 LLGSFG--DNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 155 llGs~~--~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+.+..+ .+-...|.++.+.+.|+|||+++=+.
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 158 LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 877433 22346789999999999999987554
No 162
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.99 E-value=8.8e-06 Score=77.94 Aligned_cols=68 Identities=25% Similarity=0.179 Sum_probs=53.7
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCC-ccEEEeccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEK-ADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k-~DiIVSEll 156 (359)
+.|+|+|||+ ++...++.+ . +|+|||.++.|+..++++... ++++++++|+.++..++- .|.||+++-
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERA-A-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhC-C-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 4699999997 665555555 3 899999999999999887642 579999999999876542 589998753
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.99 E-value=1.3e-05 Score=72.31 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=66.3
Q ss_pred ccCCcCChh--HHH-HHHHHcCCCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCcc
Q 039233 83 DRVPDEEAS--SLT-TAAEETGRKLK---------IYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKAD 149 (359)
Q Consensus 83 d~v~D~g~G--tl~-~~A~~aga~~~---------V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~D 149 (359)
+.++|-=|| |+. .+|..+ .... ++++|+++.++..|++|++..++++.|.++++|++++. .++.+|
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 467887555 544 444433 3334 99999999999999999999999999999999999998 567899
Q ss_pred EEEecc-ccc-cCC----CCChHHHHHHHhhccCCC
Q 039233 150 ILVSEL-LGS-FGD----NELSPECLDGAQRFLKQD 179 (359)
Q Consensus 150 iIVSEl-lGs-~~~----~El~~e~L~~a~r~Lkp~ 179 (359)
+||++. .|- .+. .++..+++....+.|++.
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999975 343 221 234455666677778874
No 164
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.93 E-value=3.1e-05 Score=72.28 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=83.2
Q ss_pred HHHHHHhcCcccHHHHHHHHHHh--------h---c-----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 039233 58 QTYETFEKDSVKYIQYQRAIGNA--------L---V-----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTL 119 (359)
Q Consensus 58 ~~Ye~f~~D~vry~~Y~~AI~~~--------~---~-----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a 119 (359)
..|+.+.+|+.....|.+++... + . .+|+|+|.|+ ++...+++-...+++..|. |..++.+
T Consensus 61 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~ 139 (241)
T PF00891_consen 61 PFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQA 139 (241)
T ss_dssp -HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCH
T ss_pred cHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcc
Confidence 37888999998888887766542 1 1 1479999876 6666566667889999999 6677777
Q ss_pred HHHHHhcCCCCeEEEEeCccccccCCCCccEEE-eccccccCCCCChHHHHHHHhhccCCC--eEEE
Q 039233 120 HSLVRLEGWEKTVTIVSCDMRCWDAPEKADILV-SELLGSFGDNELSPECLDGAQRFLKQD--GISI 183 (359)
Q Consensus 120 ~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIV-SEllGs~~~~El~~e~L~~a~r~Lkp~--Gi~I 183 (359)
++ .+||+++.||+. -..|. +|+++ +..+..+.+ +.+..+|..+.+.|+|| |.++
T Consensus 140 ~~-------~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~ll 196 (241)
T PF00891_consen 140 KE-------ADRVEFVPGDFF-DPLPV-ADVYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLL 196 (241)
T ss_dssp HH-------TTTEEEEES-TT-TCCSS-ESEEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEE
T ss_pred cc-------ccccccccccHH-hhhcc-ccceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEE
Confidence 76 689999999999 45677 99987 455555554 44677899999999998 8854
No 165
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.89 E-value=4.5e-05 Score=69.04 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=59.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-cc-C-CCCccEEEecc-c
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WD-A-PEKADILVSEL-L 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~-~-p~k~DiIVSEl-l 156 (359)
+.|+|+|||+ ++.+.++.+ ...+++||.|+.++..|++. +++++++|+.+ +. . ++++|+|++.. +
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 4799999998 444333333 24789999999988777531 36788999876 32 2 45799999742 2
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
..+ ....++|....|.++++.+.+|.
T Consensus 86 ~~~---~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 86 QAT---RNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred HcC---cCHHHHHHHHHHhCCeEEEEcCC
Confidence 222 12445677777777765555554
No 166
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.88 E-value=2.2e-05 Score=74.63 Aligned_cols=70 Identities=31% Similarity=0.322 Sum_probs=60.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl 155 (359)
|.||++|-|| |.+....+| + +|+|||++|-|+..++++++....+++.+|++||.-..++| .+|++||++
T Consensus 60 D~VLEvGPGTGnLT~~lLe~~-k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-~fd~cVsNl 131 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEAG-K-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-RFDGCVSNL 131 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHhc-C-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-ccceeeccC
Confidence 6899998776 776666665 4 89999999999999999998777789999999999998887 799999975
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.87 E-value=2.8e-05 Score=69.59 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=59.8
Q ss_pred cCCcCChhH--HHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcccc-----ccCCCCccEEEe
Q 039233 84 RVPDEEASS--LTTAAEET-GRKLKIYAVEKNPNAVVTLHSLVRLEG--WEKTVTIVSCDMRC-----WDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~a-ga~~~V~AVE~n~~a~~~a~~~~~~n~--~~~~V~vi~~d~~~-----~~~p~k~DiIVS 153 (359)
+|+++|||+ .++++++. |+. +|++-|.++ ++..++.|++.|+ ...+|++..-|=.+ ...+.++|+|+.
T Consensus 48 ~VLELGaG~Gl~gi~~a~~~~~~-~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 48 RVLELGAGTGLPGIAAAKLFGAA-RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-S-EEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred eEEEECCccchhHHHHHhccCCc-eEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 589999987 67777777 666 999999999 9999999999987 66778887765322 112358999984
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
-+.+-+.+..+..+....++|+++|.
T Consensus 126 --sDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 126 --SDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp --ES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred --ecccchHHHHHHHHHHHHHHhCCCCE
Confidence 34444566677777888899999876
No 168
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=6.7e-05 Score=72.47 Aligned_cols=110 Identities=24% Similarity=0.294 Sum_probs=83.8
Q ss_pred cCCcCC--hhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc--CC-CCeEEEEeCccccc--cCCCCccEEEeccc
Q 039233 84 RVPDEE--ASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE--GW-EKTVTIVSCDMRCW--DAPEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g--~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n--~~-~~~V~vi~~d~~~~--~~p~k~DiIVSEll 156 (359)
+||-+| .|...+.+.+-..--+|++||+++..++.+++-+..- +. ..|++++.+|..++ +.++++|+||...-
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t 158 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST 158 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC
Confidence 566555 4556666666653349999999999999999887531 12 37999999999997 34568999998776
Q ss_pred cccCCCC--ChHHHHHHHhhccCCCeEEEccccceeeee
Q 039233 157 GSFGDNE--LSPECLDGAQRFLKQDGISIPSSYTSFIQP 193 (359)
Q Consensus 157 Gs~~~~E--l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~p 193 (359)
+..|..+ ...|.+.++++.|+++|+++=+....++.+
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 6655433 357889999999999999998877766666
No 169
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.86 E-value=6.9e-05 Score=67.98 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=75.6
Q ss_pred cCCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCC--ccEEEecccc
Q 039233 84 RVPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEK--ADILVSELLG 157 (359)
Q Consensus 84 ~v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k--~DiIVSEllG 157 (359)
++||+ |+|.|..-|..-||+ +|+.||+|..|+.++++|++.-+...+++++.+|...+ .+..+ +|+|.. +
T Consensus 46 ~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl---D 121 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL---D 121 (187)
T ss_pred EEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe---C
Confidence 57888 455588778888888 99999999999999999999877779999999999965 34445 999994 4
Q ss_pred c-cCCCCCh--HHHHHH--HhhccCCCeEEEccccce
Q 039233 158 S-FGDNELS--PECLDG--AQRFLKQDGISIPSSYTS 189 (359)
Q Consensus 158 s-~~~~El~--~e~L~~--a~r~Lkp~Gi~IP~~~t~ 189 (359)
- +. .++. ...+.. -..||+|+|.++=.....
T Consensus 122 PPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYA-KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 3 22 3333 234444 358899999976554433
No 170
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.85 E-value=7.4e-05 Score=76.99 Aligned_cols=105 Identities=26% Similarity=0.278 Sum_probs=79.1
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEecc--
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVSEL-- 155 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVSEl-- 155 (359)
++|||.++|. .+.+|+..+.+..|+|+|+++.-+..+++++++-|..+ |.+++.|.+.+. .++.+|.|+-..
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 4799998854 55556666555699999999999999999999888766 899999998763 457899999432
Q ss_pred --ccccCCCC----------------ChHHHHHHHhhccCCCeEEEccccc
Q 039233 156 --LGSFGDNE----------------LSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 156 --lGs~~~~E----------------l~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
.|.+.-+. +-.++|+.|.++|||||+++=+.||
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 23333111 1256788899999999998766665
No 171
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.84 E-value=9.3e-05 Score=73.61 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=61.3
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC----------------
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP---------------- 145 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p---------------- 145 (359)
+|+|++||+ ++.+.++. ++ +|+|||.|+.|++.|++|++.|+..+ |+++.+|+.++-..
T Consensus 200 ~vlDl~~G~G~~sl~la~~-~~-~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN-FR-RVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 699999987 66544443 45 99999999999999999999998865 99999999885221
Q ss_pred -CCccEEEeccccccCCCCChHHHHHHHhh
Q 039233 146 -EKADILVSELLGSFGDNELSPECLDGAQR 174 (359)
Q Consensus 146 -~k~DiIVSEllGs~~~~El~~e~L~~a~r 174 (359)
.++|+|+-..-- ..+.++++....+
T Consensus 277 ~~~~d~v~lDPPR----~G~~~~~l~~l~~ 302 (353)
T TIGR02143 277 SYNCSTIFVDPPR----AGLDPDTCKLVQA 302 (353)
T ss_pred cCCCCEEEECCCC----CCCcHHHHHHHHc
Confidence 137999954432 2234556665543
No 172
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.81 E-value=6.6e-05 Score=66.22 Aligned_cols=75 Identities=11% Similarity=0.024 Sum_probs=55.8
Q ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCccccccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 107 YAVEKNPNAVVTLHSLVRLEG--WEKTVTIVSCDMRCWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 107 ~AVE~n~~a~~~a~~~~~~n~--~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|||.|++|++.|+++.+..+ ..++|+++++|++++..+ +.+|+|++-. +. -.-+...++|..+.|.|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l-~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GL-RNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hh-hcCCCHHHHHHHHHHHcCcCeEEE
Confidence 489999999999988765322 235699999999998764 4799999732 11 111234568999999999999975
No 173
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.77 E-value=0.00015 Score=72.29 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=61.6
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--C--------------
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--A-------------- 144 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~-------------- 144 (359)
.+++|++||+ ++.+.++. ++ +|+|||.|+.|++.|++|++.|+.. +++++.+|+.++- +
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~-~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FR-RVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CC-EEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3699999887 66655554 45 9999999999999999999999886 5999999998741 1
Q ss_pred -CCCccEEEeccccccCCCCChHHHHHHHh
Q 039233 145 -PEKADILVSELLGSFGDNELSPECLDGAQ 173 (359)
Q Consensus 145 -p~k~DiIVSEllGs~~~~El~~e~L~~a~ 173 (359)
..++|+||-..-= ..+.++++....
T Consensus 285 ~~~~~D~v~lDPPR----~G~~~~~l~~l~ 310 (362)
T PRK05031 285 KSYNFSTIFVDPPR----AGLDDETLKLVQ 310 (362)
T ss_pred cCCCCCEEEECCCC----CCCcHHHHHHHH
Confidence 1258999954431 123455555543
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.76 E-value=0.00011 Score=66.80 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=75.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+++|+|+|- +..+.++ .+.+|+-||.+..=+..+++.++.-++.+ |+++++++++....+++|+|+|=-++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~~- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVAP- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSSS-
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhcC-
Confidence 579999985 4444333 44699999999999999999999888976 999999999965678999999987775
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
++.++.-+.++|++||.++--+..
T Consensus 127 -----l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 127 -----LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -----HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 456788889999999998876654
No 175
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.70 E-value=9.1e-05 Score=68.34 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCcCCh--hHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-ccccCCCCccEEEeccccccCC
Q 039233 85 VPDEEA--SSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-RCWDAPEKADILVSELLGSFGD 161 (359)
Q Consensus 85 v~D~g~--Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-~~~~~p~k~DiIVSEllGs~~~ 161 (359)
|.|+|| |-|...+.+.|..-+|+|+|.++.-++.|+++++..++.++|++..+|= ..++..+.+|.||-==||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 468888 5588888888866689999999999999999999999999999999995 4455545589988433443
Q ss_pred CCChHHHHHHHhhccCCCeEEEccccceeeeeccchh
Q 039233 162 NELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASK 198 (359)
Q Consensus 162 ~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~ 198 (359)
+++.++|......++ +....-++|.....
T Consensus 78 -~lI~~ILe~~~~~~~-------~~~~lILqP~~~~~ 106 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLS-------SAKRLILQPNTHAY 106 (205)
T ss_dssp -HHHHHHHHHTGGGGT-------T--EEEEEESS-HH
T ss_pred -HHHHHHHHhhHHHhc-------cCCeEEEeCCCChH
Confidence 457778887765553 33356788887654
No 176
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.70 E-value=0.00021 Score=68.81 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHhh-------cc---cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCeE
Q 039233 68 VKYIQYQRAIGNAL-------VD---RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR-LEGWEKTV 132 (359)
Q Consensus 68 vry~~Y~~AI~~~~-------~d---~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~-~n~~~~~V 132 (359)
.=|..|++.+..-+ .+ +|+=+|+|. ..++|.+.|....|..+|.+|.|+..+++.++ ..++++++
T Consensus 97 pYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m 176 (276)
T PF03059_consen 97 PYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRM 176 (276)
T ss_dssp TTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSE
T ss_pred CcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCe
Confidence 44777877776432 22 677889995 45667776766789999999999999999988 56789999
Q ss_pred EEEeCccccccCC-CCccEEE-eccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 133 TIVSCDMRCWDAP-EKADILV-SELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 133 ~vi~~d~~~~~~p-~k~DiIV-SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
+++.+|..+.... ..+|+|+ +-+.|. +.|--.++|.+..+.++||++++=.
T Consensus 177 ~f~~~d~~~~~~dl~~~DvV~lAalVg~--~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 177 SFITADVLDVTYDLKEYDVVFLAALVGM--DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEES-GGGG-GG----SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEecchhccccccccCCEEEEhhhccc--ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9999999887532 5789876 334442 4455678999999999999886644
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.69 E-value=0.00024 Score=76.79 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=46.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC---CccEEEecc
Q 039233 104 LKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE---KADILVSEL 155 (359)
Q Consensus 104 ~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~---k~DiIVSEl 155 (359)
.+|+|+|+++.|+..|++|++.+|++++|+++++|++++..+. .+|+|||+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECC
Confidence 3799999999999999999999999999999999999986543 599999984
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.63 E-value=8.3e-05 Score=70.32 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=52.5
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCcc---EEEeccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKAD---ILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~D---iIVSEll 156 (359)
+.|+|+|||+ ++...++.+ . +|+|+|.|+.++..++++... ..+++++++|+.++..+ .+| +|||++-
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~-~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP 103 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRA-K-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFPKQLKVVSNLP 103 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-C-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence 4799999987 655544544 3 799999999999999887642 45699999999988765 466 8888653
No 179
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.62 E-value=8.1e-05 Score=68.20 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=78.7
Q ss_pred HHhcCcccHHHHHHHHHH-hhc-----c--cCCcCChhH------HHHHHHH-----cCCCCeEEEEeCCHHHHHHHHHH
Q 039233 62 TFEKDSVKYIQYQRAIGN-ALV-----D--RVPDEEASS------LTTAAEE-----TGRKLKIYAVEKNPNAVVTLHSL 122 (359)
Q Consensus 62 ~f~~D~vry~~Y~~AI~~-~~~-----d--~v~D~g~Gt------l~~~A~~-----aga~~~V~AVE~n~~a~~~a~~~ 122 (359)
.|-+|+.-.+..++.|.. .+. . +|+..||+| |+|+... .+-+++|+|.|+|+.+++.|++=
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 367888888888888773 331 1 478999976 7766665 22257999999999999998762
Q ss_pred H--------------Hh-------cCC------CCeEEEEeCcccc-ccCCCCccEEEe-ccccccCCCCChHHHHHHHh
Q 039233 123 V--------------RL-------EGW------EKTVTIVSCDMRC-WDAPEKADILVS-ELLGSFGDNELSPECLDGAQ 173 (359)
Q Consensus 123 ~--------------~~-------n~~------~~~V~vi~~d~~~-~~~p~k~DiIVS-EllGs~~~~El~~e~L~~a~ 173 (359)
+ ++ ++| .++|++-+.|..+ .....++|+|+| +.|-+| +.+.-.++++...
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLH 162 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHG
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHH
Confidence 1 00 112 2469999999988 555689999998 556666 4445567888889
Q ss_pred hccCCCeEEEcccc
Q 039233 174 RFLKQDGISIPSSY 187 (359)
Q Consensus 174 r~Lkp~Gi~IP~~~ 187 (359)
+.|+|||.++=...
T Consensus 163 ~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 163 RSLKPGGYLFLGHS 176 (196)
T ss_dssp GGEEEEEEEEE-TT
T ss_pred HHcCCCCEEEEecC
Confidence 99999999765443
No 180
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.00033 Score=65.25 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=78.9
Q ss_pred ccCCcCCh--hH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-c------CCCCccEEE
Q 039233 83 DRVPDEEA--SS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-D------APEKADILV 152 (359)
Q Consensus 83 d~v~D~g~--Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~------~p~k~DiIV 152 (359)
.+.+|+|+ |- +..+|..-....+|+|+|+|+++++.+.+.++..|..++|++++|+..+. + .+..+|.++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 45789984 53 33334444445699999999999999999999999999999999998874 1 135689888
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccch
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTAS 197 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~ 197 (359)
++..-+|- ..-+..+-++||+||+++=....-.- ++.++
T Consensus 155 ---vDadK~nY--~~y~e~~l~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 155 ---VDADKDNY--SNYYERLLRLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred ---EccchHHH--HHHHHHHHhhcccccEEEEeccccCC-cccCc
Confidence 55554442 25667778999999998766644333 44443
No 181
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00011 Score=70.01 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=56.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC--CccEEEeccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE--KADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~--k~DiIVSEll 156 (359)
|.|+++|.|. |.....+.+ + +|+|||+++.++..+++... ..+++++|++|+..++++. +.+.|||++-
T Consensus 32 d~VlEIGpG~GaLT~~Ll~~~-~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 32 DNVLEIGPGLGALTEPLLERA-A-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred CeEEEECCCCCHHHHHHHhhc-C-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhcCCCEEEEcCC
Confidence 6799999986 765555553 3 89999999999999988765 4467999999999999987 7899999863
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00026 Score=63.84 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=73.7
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEec------
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSE------ 154 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSE------ 154 (359)
.++++|||| .+.++..-|..+...|.|.||.|++..++..+.|+. ++.+|+.|.-.---++++|++|=+
T Consensus 46 i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 46 ICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred eEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 479999998 445566666677899999999999999999887754 388999998774445899999842
Q ss_pred ---ccc-----c--cCCCC---ChHHHHHHHhhccCCCeEEEccccceeeeeccchhhh
Q 039233 155 ---LLG-----S--FGDNE---LSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKLH 200 (359)
Q Consensus 155 ---llG-----s--~~~~E---l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l~ 200 (359)
-+| + .|..+ -+...|......|.|.|. .|+..+.+.+..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv-------~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGV-------FYLVALRANKPK 175 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCce-------EEeeehhhcCHH
Confidence 111 1 11111 123344445567778877 567777666543
No 183
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.57 E-value=0.00013 Score=70.77 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred cCcccHHHHHHHHHHhhcc-cCCcCChhH------HHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHHH---------
Q 039233 65 KDSVKYIQYQRAIGNALVD-RVPDEEASS------LTTAAEETG----RKLKIYAVEKNPNAVVTLHSLVR--------- 124 (359)
Q Consensus 65 ~D~vry~~Y~~AI~~~~~d-~v~D~g~Gt------l~~~A~~ag----a~~~V~AVE~n~~a~~~a~~~~~--------- 124 (359)
+|+.-.+.-++.+...-.. +|+..||+| |+|+...++ .+++|+|.|+|+.+++.|++-+-
T Consensus 98 Rd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p 177 (287)
T PRK10611 98 REAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLS 177 (287)
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCC
Confidence 5555555544433221111 578899976 777766542 25789999999999999987520
Q ss_pred ---------h-----cC-------CCCeEEEEeCcccccc--CCCCccEEEe-ccccccCCCCChHHHHHHHhhccCCCe
Q 039233 125 ---------L-----EG-------WEKTVTIVSCDMRCWD--APEKADILVS-ELLGSFGDNELSPECLDGAQRFLKQDG 180 (359)
Q Consensus 125 ---------~-----n~-------~~~~V~vi~~d~~~~~--~p~k~DiIVS-EllGs~~~~El~~e~L~~a~r~Lkp~G 180 (359)
. .+ ..++|++-+.|+.+.. .++++|+|+| +.+-+| +.+.-..++....+.|+|||
T Consensus 178 ~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 178 PQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred HHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCc
Confidence 0 01 2356888888887743 3478999998 344455 34455678888899999999
Q ss_pred EEEccc
Q 039233 181 ISIPSS 186 (359)
Q Consensus 181 i~IP~~ 186 (359)
.++=..
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 975443
No 184
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.56 E-value=0.00012 Score=65.30 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=48.7
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCC----ccEEEe
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEK----ADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k----~DiIVS 153 (359)
.|+|..||. ...+|... + +|+|||+||.-+..|+.|.+--|..++|+++++|..++....+ +|+|+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--D-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhC--C-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 468887776 44555553 3 9999999999999999999988888999999999998743222 799984
No 185
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.47 E-value=1e-05 Score=75.34 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=64.9
Q ss_pred cCCcCChhH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc---cCCCCccEEEe-ccccc
Q 039233 84 RVPDEEASS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW---DAPEKADILVS-ELLGS 158 (359)
Q Consensus 84 ~v~D~g~Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~---~~p~k~DiIVS-EllGs 158 (359)
+++|+|||| |+--+.|.-++ ++.+||+|+||++.|.++-- + + ++.+.|...+ ..++++|+|++ ..|-+
T Consensus 128 ~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~---Y-D--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGL---Y-D--TLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred eeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccc---h-H--HHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 589999999 76555555555 89999999999988887521 2 2 2344444432 34689999996 44555
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+|.- ..++-++...|+|||.++=+.
T Consensus 201 lG~L---e~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 201 LGAL---EGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hcch---hhHHHHHHHhcCCCceEEEEe
Confidence 5532 237788899999999976443
No 186
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.44 E-value=0.00032 Score=59.75 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 85 VPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 85 v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
++|+|||+ .+...++.+.+.+|+|+|.+|.++..++++++.|++.+ |++++..+.+-
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 68999876 66666666666689999999999999999999998876 99999887753
No 187
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.41 E-value=0.00077 Score=61.61 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=68.6
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc----cCCCCccEEEeccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW----DAPEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~----~~p~k~DiIVSEll 156 (359)
.++|+|||. +..+|.+. +...++|||+..+.+..|.+++...+..+ |.++++|++.+ -.+..+|-|.-..-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 679999997 55556555 45699999999999999999998888877 99999999883 23467777764322
Q ss_pred cc-cC-----CCCChHHHHHHHhhccCCCeEE
Q 039233 157 GS-FG-----DNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 157 Gs-~~-----~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+- .. -.-..++.|....+.|+|||.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 22 11 1113577888889999999974
No 188
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.36 E-value=0.00053 Score=64.23 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=63.8
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------c----CCCCeEEEEeCccccccCC----
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------E----GWEKTVTIVSCDMRCWDAP---- 145 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n----~~~~~V~vi~~d~~~~~~p---- 145 (359)
.+|++.|||. =+.+.+..| .+|+|||.|+.|++.+.+.... + --+.+|+++++|+-++..+
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4789999997 233334456 5899999999999887652100 0 0135799999999998642
Q ss_pred CCccEEEecccccc--CCCCChHHHHHHHhhccCCCeEEE
Q 039233 146 EKADILVSELLGSF--GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 146 ~k~DiIVSEllGs~--~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.++|.|.= -+.| +..++=........++|+|||.++
T Consensus 123 ~~fD~VyD--ra~~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 123 PVFDIWYD--RGAYIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CCcCeeee--ehhHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 47999772 2222 122233445566678999998843
No 189
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.36 E-value=5.1e-05 Score=61.70 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=42.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCe
Q 039233 104 LKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDG 180 (359)
Q Consensus 104 ~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~G 180 (359)
.++++||..+. ...+++.+++.+..++++++++++.+. ..+ +++|+|+ ++.--..+.....|..+.+.|+|||
T Consensus 24 ~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~---iDg~H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 24 GKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIF---IDGDHSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp ---EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEE---EES---HHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEE---ECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 38999999985 445566666567888899999999886 333 7899998 4432122334556777888999999
Q ss_pred EEE
Q 039233 181 ISI 183 (359)
Q Consensus 181 i~I 183 (359)
+++
T Consensus 100 viv 102 (106)
T PF13578_consen 100 VIV 102 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 190
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.33 E-value=0.0016 Score=56.23 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=71.8
Q ss_pred cCCcCChhH--HHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCccccccCCCCccEEEecc
Q 039233 84 RVPDEEASS--LTTAAEE----TGRKLKIYAVEKNPNAVVTLHSLVRLEG--WEKTVTIVSCDMRCWDAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~----aga~~~V~AVE~n~~a~~~a~~~~~~n~--~~~~V~vi~~d~~~~~~p~k~DiIVSEl 155 (359)
.|+|+|+|. |+++.+. .....+|+|||.|+...+.++++.+..+ +..+++.+.+++.+.......+++|+
T Consensus 28 ~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg-- 105 (141)
T PF13679_consen 28 TVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDILVG-- 105 (141)
T ss_pred EEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEEEE--
Confidence 579999997 7766555 1245799999999999999999988766 66778888888877655667788886
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeE-EEcccc
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGI-SIPSSY 187 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi-~IP~~~ 187 (359)
|-..| .|++.+|..+.+ -.-.++ ++|.-|
T Consensus 106 LHaCG--~Ls~~~l~~~~~-~~~~~l~~vpCCy 135 (141)
T PF13679_consen 106 LHACG--DLSDRALRLFIR-PNARFLVLVPCCY 135 (141)
T ss_pred eeccc--chHHHHHHHHHH-cCCCEEEEcCCcc
Confidence 44444 467888877765 222333 456655
No 191
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.001 Score=66.43 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=47.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEecc
Q 039233 106 IYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSEL 155 (359)
Q Consensus 106 V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEl 155 (359)
+|++|+++.+++.|+.|.++.|.++.|++.++|++++..+ +.+|+|||+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 7799999999999999999999999999999999999887 8999999976
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.00059 Score=63.41 Aligned_cols=106 Identities=24% Similarity=0.223 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHhh---------cccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Q 039233 69 KYIQYQRAIGNAL---------VDRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 69 ry~~Y~~AI~~~~---------~d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi 135 (359)
..+.|.+-|...+ .++++|+|+|. +-++... +..+|+-||.+..=+..+++..+.-+++| |+++
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~--p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~ 122 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF--PDLKVTLLESLGKKIAFLREVKKELGLEN-VEIV 122 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc--cCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEe
Confidence 3566776666543 13689999986 4444333 34589999999988999999998888877 9999
Q ss_pred eCccccccCCCC-ccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 136 SCDMRCWDAPEK-ADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 136 ~~d~~~~~~p~k-~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++.++++....+ +|+|+|--+++ +..++.-+..+||+||.++
T Consensus 123 ~~RaE~~~~~~~~~D~vtsRAva~------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 123 HGRAEEFGQEKKQYDVVTSRAVAS------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred hhhHhhcccccccCcEEEeehccc------hHHHHHHHHHhcccCCcch
Confidence 999999976445 99999987776 3457788899999988753
No 193
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00058 Score=67.37 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred cCCcCCh--hHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-ccccccCCCC-ccEEEecc-ccc
Q 039233 84 RVPDEEA--SSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-DMRCWDAPEK-ADILVSEL-LGS 158 (359)
Q Consensus 84 ~v~D~g~--Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-d~~~~~~p~k-~DiIVSEl-lGs 158 (359)
.|+|-=| |++.+-|...| .+|+++|.+..|+.-|+.|++.-+.++ ..++.. |++++.++++ +|.|+++. .|-
T Consensus 200 ~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred EeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCCCccceEEecCCCCc
Confidence 7888644 55667777778 489999999999999999999866666 666666 9999999887 99999875 342
Q ss_pred ------cCCCCChHHHHHHHhhccCCCeE
Q 039233 159 ------FGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 159 ------~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
...++|..+.|+.+.+.||+||.
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGR 305 (347)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhcCcE
Confidence 11245677788888999999995
No 194
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.30 E-value=0.0011 Score=57.46 Aligned_cols=84 Identities=27% Similarity=0.426 Sum_probs=59.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCC-CccEEEecccccc--CCCCC------hHHHHHHHh
Q 039233 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APE-KADILVSELLGSF--GDNEL------SPECLDGAQ 173 (359)
Q Consensus 105 ~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~-k~DiIVSEllGs~--~~~El------~~e~L~~a~ 173 (359)
+|||.|+-+.|++.+++++++++..++|++++..=+++. +++ ++|.+|-+ +|++ +|.+. ..+.|+.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-LGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-LGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-ESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-CCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 799999999999999999999999999999998877764 355 89999875 7773 34442 123456677
Q ss_pred hccCCCeEEEccccce
Q 039233 174 RFLKQDGISIPSSYTS 189 (359)
Q Consensus 174 r~Lkp~Gi~IP~~~t~ 189 (359)
+.|+|||+++=-.|.=
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 8999999987555543
No 195
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.27 E-value=0.00052 Score=63.35 Aligned_cols=97 Identities=25% Similarity=0.163 Sum_probs=57.3
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------cCC-CCeEEEEeCccccccC----CCC
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------EGW-EKTVTIVSCDMRCWDA----PEK 147 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n~~-~~~V~vi~~d~~~~~~----p~k 147 (359)
|..+|+|||+ +..+|...+.+ ++++||+.+.....|++..+. .|. ..+|+++++|+.+-+. -..
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~-~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCK-KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--S-EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCc-EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 4679999997 66778888887 899999999999888765542 111 3579999999987432 146
Q ss_pred ccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 148 ADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 148 ~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|+|+.+-. .| +.++.. -|.....-||+|.++|
T Consensus 123 AdvVf~Nn~-~F-~~~l~~-~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 123 ADVVFVNNT-CF-DPDLNL-ALAELLLELKPGARII 155 (205)
T ss_dssp -SEEEE--T-TT--HHHHH-HHHHHHTTS-TT-EEE
T ss_pred CCEEEEecc-cc-CHHHHH-HHHHHHhcCCCCCEEE
Confidence 899985321 12 223333 3333445679998887
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.21 E-value=0.00079 Score=66.54 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=68.5
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh---------cCCCCeEEEEeCcccccc-----CC
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL---------EGWEKTVTIVSCDMRCWD-----AP 145 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~---------n~~~~~V~vi~~d~~~~~-----~p 145 (359)
..|||+|||- |.... +++.+ .++++|++..+++.|+++.+. ....-....+.+|...-. .+
T Consensus 64 ~~VLDl~CGkGGDL~Kw~-~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQ-KAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHH-HTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHH-hcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 3699999986 66663 45666 999999999999999999832 111224667888876532 22
Q ss_pred --CCccEEEecc-ccc-cCCCCChHHHHHHHhhccCCCeEEE---ccccce
Q 039233 146 --EKADILVSEL-LGS-FGDNELSPECLDGAQRFLKQDGISI---PSSYTS 189 (359)
Q Consensus 146 --~k~DiIVSEl-lGs-~~~~El~~e~L~~a~r~Lkp~Gi~I---P~~~t~ 189 (359)
.++|+|=+=. |-+ |..++-+...|..+.+.|||||.+| |++..+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 4899987633 444 4444445557888999999999954 555444
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0013 Score=61.94 Aligned_cols=105 Identities=20% Similarity=0.370 Sum_probs=69.4
Q ss_pred cCCcCCh--hHHH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcC---------------------------------
Q 039233 84 RVPDEEA--SSLT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEG--------------------------------- 127 (359)
Q Consensus 84 ~v~D~g~--Gtl~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~--------------------------------- 127 (359)
.+||+|| |+|+ .+|...|++ .|.+||+++..+..|+++++.-.
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 3799998 5554 567889988 99999999999999999876310
Q ss_pred ------C--CCeEEEEeCccccccCCCCccEEEe----cccc-ccCCCCChHHHHHHHhhccCCCeEEE--ccccceee
Q 039233 128 ------W--EKTVTIVSCDMRCWDAPEKADILVS----ELLG-SFGDNELSPECLDGAQRFLKQDGISI--PSSYTSFI 191 (359)
Q Consensus 128 ------~--~~~V~vi~~d~~~~~~p~k~DiIVS----EllG-s~~~~El~~e~L~~a~r~Lkp~Gi~I--P~~~t~~~ 191 (359)
| ..+..+-..|+-+. ...++|+|.+ -|+- .-|| +++.+.+..+.++|.|||++| |+...+|.
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred cCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 0 01122222233322 2358999985 2221 1233 456779999999999999965 55555543
No 198
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00088 Score=68.44 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=66.4
Q ss_pred ccCCcCChh--HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC----CCccEEEeccc
Q 039233 83 DRVPDEEAS--SLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP----EKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~G--tl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p----~k~DiIVSEll 156 (359)
++++|.=|| +.++..++. .+ +|+|||.++.|++.|++|++.|+..| ++++.++.+++... .++|.||-..-
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~-~~-~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKR-VK-KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CEEEEeccCCChhhhhhccc-CC-EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 578998665 466555433 34 99999999999999999999999999 99999999997542 47899996555
Q ss_pred cccCCCCChHHHHHHHhhccCCCeE
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
-+..+ ++.++...+ ++|..|
T Consensus 372 R~G~~----~~~lk~l~~-~~p~~I 391 (432)
T COG2265 372 RAGAD----REVLKQLAK-LKPKRI 391 (432)
T ss_pred CCCCC----HHHHHHHHh-cCCCcE
Confidence 44333 234544443 345444
No 199
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.19 E-value=0.00025 Score=68.36 Aligned_cols=91 Identities=25% Similarity=0.176 Sum_probs=69.7
Q ss_pred cCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 84 RVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
.|.|.=+|+ ... +-.+|||+ .|+|+|-||.+++.++++++.|+..++..+++||-|...+...+|-|.--++-|
T Consensus 197 viVDLYAGIGYFTlpflV~agAk-~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPS-- 273 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTAGAK-TVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPS-- 273 (351)
T ss_pred hhhhhhcccceEEeehhhccCcc-EEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccccc--
Confidence 456765654 223 55788999 999999999999999999999999999999999999999988999998433333
Q ss_pred CCCChHHHHHHHhhccCCCeE
Q 039233 161 DNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi 181 (359)
.++. --.|-+.|||.|-
T Consensus 274 se~~----W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 274 SEQG----WPTAIKALKPEGG 290 (351)
T ss_pred cccc----hHHHHHHhhhcCC
Confidence 1122 2356677887543
No 200
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.18 E-value=0.00026 Score=66.45 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEe-ccccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVS-ELLGS 158 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVS-EllGs 158 (359)
..+|+|||+ .-++|.. -+ +|+|+|.|+.|+..|++.-...-..-..+....++.++. .++.+|+|++ +.+--
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 568999998 2234444 35 999999999999988775432222234566666777764 4689999996 33333
Q ss_pred cCCCCChHHHHHHHhhccCCCe-EEEccccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDG-ISIPSSYT 188 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~G-i~IP~~~t 188 (359)
|- .++.+.-+.|.||++| ++.==.|+
T Consensus 113 Fd----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 FD----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hc----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 33 3557778899997765 65444443
No 201
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00044 Score=64.91 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=70.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEec
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVSE 154 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVSE 154 (359)
.++++|||. +-.++.....+.+|||+|-+|.|++..+++...+ +.++.....|...-+ .+..+|+|+.=
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhcccceeccchhccCCCCcCccceEEEE
Confidence 468999996 3355555545589999999999999988876543 245555555554432 13568998853
Q ss_pred cccccCCCCChHHHHHHHhhccCCCeEEEcccccee
Q 039233 155 LLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSF 190 (359)
Q Consensus 155 llGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~ 190 (359)
..=|-..-|-+...+....+.|||||.++=..|..|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 333333444566788888999999999876655443
No 202
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.16 E-value=0.00086 Score=65.21 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred cCCcCChhH---HHHHH-HHcCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCeEEEEeCcccc-c-----cCCCCccEEE
Q 039233 84 RVPDEEASS---LTTAA-EETGRKLKIYAVEKNPNAVVTLHSLVRLE-GWEKTVTIVSCDMRC-W-----DAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A-~~aga~~~V~AVE~n~~a~~~a~~~~~~n-~~~~~V~vi~~d~~~-~-----~~p~k~DiIV 152 (359)
+++|||||. -.+++ ...| .+++|.|+++.+++.|+++++.| +++++|++++..-.. + ...+++|+.+
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred EeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 369999996 23333 3344 69999999999999999999999 999999999875433 1 1236899999
Q ss_pred ecc
Q 039233 153 SEL 155 (359)
Q Consensus 153 SEl 155 (359)
|+.
T Consensus 183 CNP 185 (299)
T PF05971_consen 183 CNP 185 (299)
T ss_dssp E--
T ss_pred cCC
Confidence 864
No 203
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.15 E-value=0.00077 Score=62.76 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=62.1
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-cC----------CCCeEEEEeCccccccCC--CC
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-EG----------WEKTVTIVSCDMRCWDAP--EK 147 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-n~----------~~~~V~vi~~d~~~~~~p--~k 147 (359)
+|+..|||. +..+|. .| .+|+|||.++.|++.+.+.... .. -.++|+++++|+-++... .+
T Consensus 40 rvLvPgCG~g~D~~~La~-~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAE-QG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp EEEETTTTTSCHHHHHHH-TT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred eEEEeCCCChHHHHHHHH-CC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 689999997 555554 46 5999999999999887432211 00 124699999999998654 36
Q ss_pred ccEEEeccccc--cCCCCChHHHHHHHhhccCCCeEE
Q 039233 148 ADILVSELLGS--FGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 148 ~DiIVSEllGs--~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
+|+|.= -++ .+..++=++-.....++|||||.+
T Consensus 117 fD~iyD--r~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 117 FDLIYD--RTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp EEEEEE--CSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred ceEEEE--ecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 999983 222 223333344556667899999993
No 204
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00051 Score=62.68 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=65.6
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccc-cC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGS-FG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs-~~ 160 (359)
+|||.|+|+ .+.+|+++||+ .|.+.|..|.....++-|.+.|+. .|.+++.|.-- .+..+|+|+ .|- |-
T Consensus 82 rVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~Dl~L---agDlfy 153 (218)
T COG3897 82 RVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFDLLL---AGDLFY 153 (218)
T ss_pred eeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCcceeEEE---eeceec
Confidence 589999998 78999999999 999999999988888888888874 58888888876 567899998 454 33
Q ss_pred CCCChHHHHHHHhhccCCCeE
Q 039233 161 DNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi 181 (359)
+......++. -.+.|+..|.
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCC
Confidence 3333333344 3333444443
No 205
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.08 E-value=0.0015 Score=65.58 Aligned_cols=93 Identities=26% Similarity=0.346 Sum_probs=70.9
Q ss_pred cCCcC--ChhH-HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-eEEEEeCcccccc--CCCCccEEEeccc
Q 039233 84 RVPDE--EASS-LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEK-TVTIVSCDMRCWD--APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~--g~Gt-l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~-~V~vi~~d~~~~~--~p~k~DiIVSEll 156 (359)
+++|. |||. -.+.|.. .|.. +|++-|.|++|++..++|++.|+.++ +|++.++|...+- ..+++|+|=-+..
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~-~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPf 130 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVD-KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPF 130 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSEC-EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--S
T ss_pred eEEeccccccHHHHHHHHHcCCCC-EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCC
Confidence 46776 5565 5677777 6766 99999999999999999999999998 8999999999875 5789999984444
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
|| ....|++|-+.+|.||++.
T Consensus 131 GS------p~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 131 GS------PAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp S--------HHHHHHHHHHEEEEEEEE
T ss_pred CC------ccHhHHHHHHHhhcCCEEE
Confidence 43 2248999999999999854
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00088 Score=58.53 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=67.5
Q ss_pred HHHhcCcccHHHHHH--HH--------HHhhcc----cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q 039233 61 ETFEKDSVKYIQYQR--AI--------GNALVD----RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR 124 (359)
Q Consensus 61 e~f~~D~vry~~Y~~--AI--------~~~~~d----~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~ 124 (359)
+.|++=.+.-++|-. -| ....-| +++|+|||. |+.++...++. .|.++|++|+|++++.+|.+
T Consensus 14 ~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e-~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 14 DGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNE-SVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred ccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCc-eEEeeecCHHHHHHHhhchH
Confidence 457777777888831 11 111122 468888876 88777778877 99999999999999999987
Q ss_pred hcCCCCeEEEEeCccccccCC-CCccEEEec
Q 039233 125 LEGWEKTVTIVSCDMRCWDAP-EKADILVSE 154 (359)
Q Consensus 125 ~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSE 154 (359)
. ++-++.++++|+.+..+. ..+|..|-+
T Consensus 93 E--fEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 93 E--FEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred H--hhhhhheeeeeccchhccCCeEeeEEec
Confidence 6 556679999999997654 568888743
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.04 E-value=0.00057 Score=65.06 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=58.0
Q ss_pred HHHHHHHhhc----ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC
Q 039233 73 YQRAIGNALV----DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE 146 (359)
Q Consensus 73 Y~~AI~~~~~----d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~ 146 (359)
..+.|..++. +.|+|+|.|+ ++..-.+.+ + +|+|||+++..+..++++.. -..+++++++|..+++.+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~-~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-K-RVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-S-EEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-C-cceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 3344444442 4689999886 665555555 5 99999999999999888654 3467999999999998876
Q ss_pred ----CccEEEeccc
Q 039233 147 ----KADILVSELL 156 (359)
Q Consensus 147 ----k~DiIVSEll 156 (359)
+...||+.+-
T Consensus 93 ~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 93 LLKNQPLLVVGNLP 106 (262)
T ss_dssp HCSSSEEEEEEEET
T ss_pred hhcCCceEEEEEec
Confidence 6678888653
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.03 E-value=0.00051 Score=63.72 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=65.4
Q ss_pred cCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccc-cc
Q 039233 84 RVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELL-GS 158 (359)
Q Consensus 84 ~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEll-Gs 158 (359)
+.+|.|+|+ ++. +.... .+ +|..||.++.-++.|++.+.. +-....++++.-+.+|.++ .++|+|-.-|. |+
T Consensus 58 ~alDcGAGIGRVTk~lLl~~-f~-~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 58 RALDCGAGIGRVTKGLLLPV-FD-EVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp EEEEET-TTTHHHHHTCCCC--S-EEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred eEEecccccchhHHHHHHHh-cC-EeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 468999997 442 21222 34 999999999999999987653 2345678999999999886 69999999985 55
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+-|.+ ..+.|..+...|+|+|+++=
T Consensus 135 LTD~d-lv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 135 LTDED-LVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp S-HHH-HHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHH-HHHHHHHHHHhCcCCcEEEE
Confidence 55554 45699999999999998653
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.02 E-value=0.001 Score=64.72 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=53.9
Q ss_pred ccCCcCChhH--HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCC---CccEEEec
Q 039233 83 DRVPDEEASS--LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APE---KADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt--l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~---k~DiIVSE 154 (359)
+.++|.+||. -+. ++.+.+...+|+|+|.++.|+..|++++.. .++|+++++|.+++. +++ .+|.|+..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 3689998886 333 334443345999999999999999988753 578999999999873 333 79999974
Q ss_pred cccc
Q 039233 155 LLGS 158 (359)
Q Consensus 155 llGs 158 (359)
+|.
T Consensus 98 -LGv 100 (296)
T PRK00050 98 -LGV 100 (296)
T ss_pred -CCc
Confidence 443
No 210
>PRK04148 hypothetical protein; Provisional
Probab=97.01 E-value=0.0019 Score=55.70 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=58.7
Q ss_pred HHHHhhc----ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC--CC
Q 039233 76 AIGNALV----DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA--PE 146 (359)
Q Consensus 76 AI~~~~~----d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~--p~ 146 (359)
.|.+++. .+++|+|||+ ++...++.| ..|+|+|.||.+++.|+++ .+.++.+|+.+-++ -+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 3555543 3589999987 565556666 5999999999988777654 27899999987544 37
Q ss_pred CccEEEeccccccCCCCChHHHHHHHhh
Q 039233 147 KADILVSELLGSFGDNELSPECLDGAQR 174 (359)
Q Consensus 147 k~DiIVSEllGs~~~~El~~e~L~~a~r 174 (359)
.+|+|-| + =-..|+.+.+++-|.+
T Consensus 77 ~a~liys--i--rpp~el~~~~~~la~~ 100 (134)
T PRK04148 77 NAKLIYS--I--RPPRDLQPFILELAKK 100 (134)
T ss_pred cCCEEEE--e--CCCHHHHHHHHHHHHH
Confidence 8999997 1 1134555655555544
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.99 E-value=0.0016 Score=64.73 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=40.6
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
.++|.-||+ +++..++. ++ +|+|||.+++|++.|++|.+.|+..+ ++++.+++.++
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~-~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AK-KVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SS-EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-CC-eEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccch
Confidence 578986654 66555544 34 99999999999999999999999977 99999887664
No 212
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.96 E-value=0.004 Score=57.61 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=62.9
Q ss_pred HHHHHHhcCcccHHHHHHHHHHhhcc--------------------cCCcCChhHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 039233 58 QTYETFEKDSVKYIQYQRAIGNALVD--------------------RVPDEEASSLTTAAEETGRKLKIYAVEKNPNAVV 117 (359)
Q Consensus 58 ~~Ye~f~~D~vry~~Y~~AI~~~~~d--------------------~v~D~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~ 117 (359)
..++.|.+||.-++.|.+.-.+.++. .|.|.|||--..+ +....+.+|+..|.-..
T Consensus 29 ~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la-~~~~~~~~V~SfDLva~--- 104 (219)
T PF05148_consen 29 EALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLA-KAVPNKHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH-HH--S---EEEEESS-S---
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHH-HhcccCceEEEeeccCC---
Confidence 35788889999999997766654321 2579999962222 22223357999997531
Q ss_pred HHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEe--ccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 118 TLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVS--ELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 118 ~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVS--EllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
| + .|+.+||..+.++ +.+|++|. -+||+ | .+++|..|.|.||+||+++=.
T Consensus 105 --------n---~--~Vtacdia~vPL~~~svDv~VfcLSLMGT---n--~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 105 --------N---P--RVTACDIANVPLEDESVDVAVFCLSLMGT---N--WPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp --------S---T--TEEES-TTS-S--TT-EEEEEEES---SS------HHHHHHHHHHHEEEEEEEEEE
T ss_pred --------C---C--CEEEecCccCcCCCCceeEEEEEhhhhCC---C--cHHHHHHHHheeccCcEEEEE
Confidence 2 2 2677999998875 56999994 24553 3 688999999999999984433
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.93 E-value=0.0046 Score=58.02 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=34.3
Q ss_pred HHHHHHHHh---hcc-cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHH
Q 039233 72 QYQRAIGNA---LVD-RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVT 118 (359)
Q Consensus 72 ~Y~~AI~~~---~~d-~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~ 118 (359)
+.+.++... +++ .++|+|||| ++..+++.|++ +|||||.+++++..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~-~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAK-EVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHH
Confidence 344555553 234 589999998 88888888988 99999999976543
No 214
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.86 E-value=0.003 Score=57.62 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=59.5
Q ss_pred HHHHHhhc--ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-c--CCCC
Q 039233 75 RAIGNALV--DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-D--APEK 147 (359)
Q Consensus 75 ~AI~~~~~--d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~--~p~k 147 (359)
+.|..-++ .+|||+|||. |....++. .+++.++||++++.+..+.+ .-+.||++|+.+- . ....
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCC
Confidence 45555554 4899999986 43333332 35799999999976533322 2377999999882 1 3467
Q ss_pred ccEEE-eccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 148 ADILV-SELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 148 ~DiIV-SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
+|.|| |-.+-..-. -.++|...-|.-|..=+++|.-+
T Consensus 76 FD~VIlsqtLQ~~~~---P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 76 FDYVILSQTLQAVRR---PDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred ccEEehHhHHHhHhH---HHHHHHHHHHhcCeEEEEecChH
Confidence 99988 322222211 12244444444444445777643
No 215
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.80 E-value=0.0037 Score=61.13 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=69.6
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-C----CCCeEEEEeCccccccC------CC-Cc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-G----WEKTVTIVSCDMRCWDA------PE-KA 148 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-~----~~~~V~vi~~d~~~~~~------p~-k~ 148 (359)
.++|+|||- |... .+||.+ .++++|+.+..+..|+++-+.- + +.=.+.++.+|.....+ +. ++
T Consensus 120 ~~~~LgCGKGGDLlKw-~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKW-DKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccceeccCCcccHhHh-hhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 478999986 5544 356776 9999999999999999887531 1 11247899999877532 23 38
Q ss_pred cEEEecc-ccc-cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 149 DILVSEL-LGS-FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 149 DiIVSEl-lGs-~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
|||=|-. |-+ |...|-.--.|..+.+.|||||.+|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 9887643 333 5555555556788899999999976
No 216
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.79 E-value=0.0036 Score=57.73 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=63.6
Q ss_pred hcCcccHHHHHHHHHHhhcccCCcCCh---hHHHHHH---HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Q 039233 64 EKDSVKYIQYQRAIGNALVDRVPDEEA---SSLTTAA---EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC 137 (359)
Q Consensus 64 ~~D~vry~~Y~~AI~~~~~d~v~D~g~---Gtl~~~A---~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~ 137 (359)
.|.|..+-+|++-|.+.-.|.++++|. |++.++| +..|.+.+|++||++... ..++..+...+.++|++++|
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI~~i~G 92 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRITFIQG 92 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCceEEEEC
Confidence 467778889999999888899999986 6643332 344445599999996432 22333444567789999999
Q ss_pred ccccccC---------CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 138 DMRCWDA---------PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 138 d~~~~~~---------p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
|+.+.+. +....+|| +++-=..+.....|..-..++++|+..|
T Consensus 93 ds~d~~~~~~v~~~~~~~~~vlVi---lDs~H~~~hvl~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 93 DSIDPEIVDQVRELASPPHPVLVI---LDSSHTHEHVLAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp -SSSTHHHHTSGSS----SSEEEE---ESS----SSHHHHHHHHHHT--TT-EEE
T ss_pred CCCCHHHHHHHHHhhccCCceEEE---ECCCccHHHHHHHHHHhCccCCCCCEEE
Confidence 9987641 12233444 5553334566677878788999999865
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.75 E-value=0.00047 Score=61.50 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=52.8
Q ss_pred cCCcCChhH--HHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--------C---CCCcc
Q 039233 84 RVPDEEASS--LTTAAEETG-RKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--------A---PEKAD 149 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~ag-a~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--------~---p~k~D 149 (359)
.++|+||+. .+..+.+.+ .+.+|+|||..+. ... ..+..+++|+.+.. + .+++|
T Consensus 26 ~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d 93 (181)
T PF01728_consen 26 TVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEKFD 93 (181)
T ss_dssp EEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred EEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccCcc
Confidence 589999866 777766665 3449999999985 112 23666777776532 1 25899
Q ss_pred EEEeccccccC-----CC----CChHHHHHHHhhccCCCeEEE
Q 039233 150 ILVSELLGSFG-----DN----ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 150 iIVSEllGs~~-----~~----El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|+|...-... +. ++....|.-+.++||+||.+|
T Consensus 94 lv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 94 LVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp EEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred eeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 99998622211 11 123334455568899999754
No 218
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.73 E-value=0.0045 Score=59.46 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHhcCcccHHHHHHHHHHhhc----c---cCCcCChhH------HHHHHHHcC-----CCCeEEEEeCCHHHHHHHHHHH
Q 039233 62 TFEKDSVKYIQYQRAIGNALV----D---RVPDEEASS------LTTAAEETG-----RKLKIYAVEKNPNAVVTLHSLV 123 (359)
Q Consensus 62 ~f~~D~vry~~Y~~AI~~~~~----d---~v~D~g~Gt------l~~~A~~ag-----a~~~V~AVE~n~~a~~~a~~~~ 123 (359)
.|.+|+...+..++-|...+. . +|+..||+| |+|++.+++ .+++|+|.|+|..+++.|+.=+
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 345788888877766664332 1 468889986 778877766 3689999999999998887522
Q ss_pred H------h---------------cC-------CCCeEEEEeCcccccc-CCCCccEEEe-ccccccCCCCChHHHHHHHh
Q 039233 124 R------L---------------EG-------WEKTVTIVSCDMRCWD-APEKADILVS-ELLGSFGDNELSPECLDGAQ 173 (359)
Q Consensus 124 ~------~---------------n~-------~~~~V~vi~~d~~~~~-~p~k~DiIVS-EllGs~~~~El~~e~L~~a~ 173 (359)
= + .+ ....|++-..|+-+-. .+.++|+|+| +.|-+|- .+.-.+++....
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~ 228 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFA 228 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHH
Confidence 0 0 00 1124566666665544 5678999998 5666654 455566788888
Q ss_pred hccCCCeEEE
Q 039233 174 RFLKQDGISI 183 (359)
Q Consensus 174 r~Lkp~Gi~I 183 (359)
..|+|||.++
T Consensus 229 ~~L~~gG~Lf 238 (268)
T COG1352 229 DSLKPGGLLF 238 (268)
T ss_pred HHhCCCCEEE
Confidence 9999999854
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.66 E-value=0.013 Score=54.59 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=61.9
Q ss_pred cCCcCCh--hH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccEEEeccc
Q 039233 84 RVPDEEA--SS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~--Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~DiIVSEll 156 (359)
+||-+|+ || +|-.+--.|....|||||-+|-....+-+..++ - .+|--|-+|.+.-. +-+++|+|.+..-
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R-~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--R-PNIIPILEDARHPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--S-TTEEEEES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--C-CceeeeeccCCChHHhhcccccccEEEecCC
Confidence 5766664 65 888888888777999999999776666555443 2 34888889998742 3469999997644
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-. +-..=++..+..|||+||.++
T Consensus 153 Qp----~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 153 QP----DQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp ST----THHHHHHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHhhccCCcEEE
Confidence 21 112224477889999999754
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0078 Score=55.48 Aligned_cols=88 Identities=26% Similarity=0.239 Sum_probs=60.4
Q ss_pred cCCcCCh--hHHHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--------C-CCCccEE
Q 039233 84 RVPDEEA--SSLTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--------A-PEKADIL 151 (359)
Q Consensus 84 ~v~D~g~--Gtl~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--------~-p~k~DiI 151 (359)
.|+|+|+ |..+. +|.+.|++.+|+|||..|... ..+ |..+++|+++-+ + ..++|+|
T Consensus 48 ~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 5789997 66664 667788777899999999421 233 999999999864 2 2457999
Q ss_pred EeccccccC-----CCC----ChHHHHHHHhhccCCCeEEE
Q 039233 152 VSELLGSFG-----DNE----LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 152 VSEllGs~~-----~~E----l~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|...-... |.. |..-.++-|...|+|||.++
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 997654322 222 22223455578899999754
No 221
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.54 E-value=0.012 Score=56.06 Aligned_cols=110 Identities=21% Similarity=0.375 Sum_probs=74.1
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhc---------------c-----cCCcCChhHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 039233 59 TYETFEKDSVKYIQYQRAIGNALV---------------D-----RVPDEEASSLTTAAEETGRKLKIYAVEKNPNAVVT 118 (359)
Q Consensus 59 ~Ye~f~~D~vry~~Y~~AI~~~~~---------------d-----~v~D~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~ 118 (359)
....|-.||.-.+.|.+....-++ . .|.|.|||-- ..|. +..-+|+..|.-+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEa-kiA~--~~~~kV~SfDL~a----- 209 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEA-KIAS--SERHKVHSFDLVA----- 209 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchh-hhhh--ccccceeeeeeec-----
Confidence 345566798889988766654321 1 2579999951 2222 3334888888632
Q ss_pred HHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccch
Q 039233 119 LHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTAS 197 (359)
Q Consensus 119 a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~ 197 (359)
.+ =.|+.+||+++.++ +.+||+|. .|.-+|.| ..+.+..|.|.||+||+ +|||-|.|.
T Consensus 210 ---------~~--~~V~~cDm~~vPl~d~svDvaV~-CLSLMgtn--~~df~kEa~RiLk~gG~-------l~IAEv~SR 268 (325)
T KOG3045|consen 210 ---------VN--ERVIACDMRNVPLEDESVDVAVF-CLSLMGTN--LADFIKEANRILKPGGL-------LYIAEVKSR 268 (325)
T ss_pred ---------CC--CceeeccccCCcCccCcccEEEe-eHhhhccc--HHHHHHHHHHHhccCce-------EEEEehhhh
Confidence 12 34688999998765 68999995 22223333 56688999999999998 788888775
No 222
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.54 E-value=0.02 Score=56.37 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcc--cCCcCChhH------HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-eEEEEeCcccc
Q 039233 71 IQYQRAIGNALVD--RVPDEEASS------LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEK-TVTIVSCDMRC 141 (359)
Q Consensus 71 ~~Y~~AI~~~~~d--~v~D~g~Gt------l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~-~V~vi~~d~~~ 141 (359)
+.+...|.+.+.. .++|.|||+ |..+..+.+..++-++||+|.++++.+.+++....+.+ .|.-+.+|..+
T Consensus 64 ~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 64 KKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 3444555555543 478999996 22333344445689999999999999999887334543 34448998866
Q ss_pred c-c-C-----CCCccEEEeccccccCCCCC---hHHHHHHHhh-ccCCCeEEE
Q 039233 142 W-D-A-----PEKADILVSELLGSFGDNEL---SPECLDGAQR-FLKQDGISI 183 (359)
Q Consensus 142 ~-~-~-----p~k~DiIVSEllGs~~~~El---~~e~L~~a~r-~Lkp~Gi~I 183 (359)
- . + +....+++ ++||...|-. ....|....+ .|+|||.++
T Consensus 144 ~l~~l~~~~~~~~~r~~~--flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTIL--WLGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred HHhhcccccccCCccEEE--EeCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 2 1 1 23356777 4886333322 2346666667 899987754
No 223
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.53 E-value=0.0041 Score=60.21 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=63.7
Q ss_pred cCCcCChhH--HHHHHHH-c------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCe-EEEEeCccccccC---CCCccE
Q 039233 84 RVPDEEASS--LTTAAEE-T------GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKT-VTIVSCDMRCWDA---PEKADI 150 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~-a------ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~-V~vi~~d~~~~~~---p~k~Di 150 (359)
+|+|-.||+ +...|.+ . .....+||+|+++.++..|+-++...+.+.. ..+..+|+-.... ..++|+
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ 128 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDV 128 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEE
T ss_pred eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 589988887 3333333 1 1345999999999999999988765555443 5689999866443 358999
Q ss_pred EEecc-cccc--CC-----C---------CChH--HHHHHHhhccCCCeE---EEcccc
Q 039233 151 LVSEL-LGSF--GD-----N---------ELSP--ECLDGAQRFLKQDGI---SIPSSY 187 (359)
Q Consensus 151 IVSEl-lGs~--~~-----~---------El~~--e~L~~a~r~Lkp~Gi---~IP~~~ 187 (359)
||++. .|.. .. . .... ..+..+.+.||+||+ ++|.+.
T Consensus 129 ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 129 IIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp EEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 99964 3332 10 0 0011 245777899999885 667654
No 224
>PRK10742 putative methyltransferase; Provisional
Probab=96.51 E-value=0.0078 Score=57.09 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=59.2
Q ss_pred HHHHHhhc----c--cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-------CC-CCeEEEEeCc
Q 039233 75 RAIGNALV----D--RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-------GW-EKTVTIVSCD 138 (359)
Q Consensus 75 ~AI~~~~~----d--~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-------~~-~~~V~vi~~d 138 (359)
++|.+|+. + .|+|.-+|+ .+..++..|+ +|++||.||.++..++++++.- .| ..+++++++|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 45556652 3 588886555 7766667775 5999999999999999998762 22 3679999999
Q ss_pred cccc--cCCCCccEEEeccc
Q 039233 139 MRCW--DAPEKADILVSELL 156 (359)
Q Consensus 139 ~~~~--~~p~k~DiIVSEll 156 (359)
+.++ ..++.+|+|....|
T Consensus 154 a~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred HHHHHhhCCCCCcEEEECCC
Confidence 9987 24457999996544
No 225
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0092 Score=59.51 Aligned_cols=107 Identities=26% Similarity=0.261 Sum_probs=74.9
Q ss_pred ccCCcCCh--hH-HHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---C-CCCccEEEec
Q 039233 83 DRVPDEEA--SS-LTTAAEETGR-KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---A-PEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~--Gt-l~~~A~~aga-~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~-p~k~DiIVSE 154 (359)
++|+|.-+ |. .+.+|+.+.. ...|+|+|.++.=+..+++|+++-|..+ |.+++.|.+.+. . .+++|.|+-.
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlD 236 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDRILLD 236 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcEEEEC
Confidence 36788754 22 4444444432 2367999999999999999999988888 889999887652 1 2369999843
Q ss_pred ----cccccC----------------CCCChHHHHHHHhhccCCCeEEEcccccee
Q 039233 155 ----LLGSFG----------------DNELSPECLDGAQRFLKQDGISIPSSYTSF 190 (359)
Q Consensus 155 ----llGs~~----------------~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~ 190 (359)
-.|.+. ...+-.++|.+|.++|||||+++=+.|+..
T Consensus 237 aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 237 APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 234331 112345688999999999999987777643
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.43 E-value=0.019 Score=53.38 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=83.0
Q ss_pred HHHHHhhcc--cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-ccCCCCcc
Q 039233 75 RAIGNALVD--RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WDAPEKAD 149 (359)
Q Consensus 75 ~AI~~~~~d--~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~~p~k~D 149 (359)
.+|...+++ .+.|+||-- |...+.+.+..-.++|+|.|+..+..|.+++.++++.++|++..+|--. +++...+|
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d 87 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEID 87 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcC
Confidence 455555543 379999853 8888888776669999999999999999999999999999999999855 34555899
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccchh
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASK 198 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~ 198 (359)
+||--=||. -++.++|....+.| |.--..-++|...+.
T Consensus 88 ~ivIAGMGG----~lI~~ILee~~~~l-------~~~~rlILQPn~~~~ 125 (226)
T COG2384 88 VIVIAGMGG----TLIREILEEGKEKL-------KGVERLILQPNIHTY 125 (226)
T ss_pred EEEEeCCcH----HHHHHHHHHhhhhh-------cCcceEEECCCCCHH
Confidence 998534443 24666776665554 333456677776654
No 227
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.42 E-value=0.0053 Score=59.34 Aligned_cols=106 Identities=30% Similarity=0.352 Sum_probs=76.8
Q ss_pred ccCCcCChh--H-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEecc-
Q 039233 83 DRVPDEEAS--S-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSEL- 155 (359)
Q Consensus 83 d~v~D~g~G--t-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEl- 155 (359)
+.|+|..++ . .+.+|+..+.+..|+|+|.++.-+..+++++++-|..+ |.++..|.+... ...++|.|+.+.
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccchhhcCCC
Confidence 468998764 3 55666777656799999999999999999999888777 788889999872 344699999542
Q ss_pred ---ccccCC---------CC-------ChHHHHHHHhhcc----CCCeEEEccccce
Q 039233 156 ---LGSFGD---------NE-------LSPECLDGAQRFL----KQDGISIPSSYTS 189 (359)
Q Consensus 156 ---lGs~~~---------~E-------l~~e~L~~a~r~L----kp~Gi~IP~~~t~ 189 (359)
.|.+.- .+ +-.++|+.+.++| ||||+++=+.++.
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 233221 11 1235788889999 9999987665553
No 228
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0088 Score=56.10 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=71.6
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCC-CccEEEeccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APE-KADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~-k~DiIVSEll 156 (359)
.+++||||. ++.+|++. +...++|||+....+..|.+.+.+.++. .|.++++|+.++- .+. .+|-|.-..-
T Consensus 51 i~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 579999986 77777776 4559999999998999999988887776 5999999999963 233 5666653222
Q ss_pred cc-cC----CCC-ChHHHHHHHhhccCCCeEE
Q 039233 157 GS-FG----DNE-LSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 157 Gs-~~----~~E-l~~e~L~~a~r~Lkp~Gi~ 182 (359)
+- .. -.- ..++.|....+.|||||.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l 160 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVL 160 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEE
Confidence 22 11 112 3577888889999999983
No 229
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.014 Score=55.88 Aligned_cols=138 Identities=20% Similarity=0.168 Sum_probs=90.5
Q ss_pred ecccchhhhcccc---cCCCCCccccCcHHHHHHHh--cCcccHHHHHHHHHHhhc----ccCCcCChhH--HHHHHHHc
Q 039233 32 ISDEFCTIEFSNY---YLSFQPLMDNLEAQTYETFE--KDSVKYIQYQRAIGNALV----DRVPDEEASS--LTTAAEET 100 (359)
Q Consensus 32 ~~~~~~~~~~~~~---~~~~qPl~dnL~s~~Ye~f~--~D~vry~~Y~~AI~~~~~----d~v~D~g~Gt--l~~~A~~a 100 (359)
|-.-.++..+++. +.-+||--+ .|-.-+ +-.+-|..=-..|...+. ++|++.|+|+ +|-+-+|+
T Consensus 52 IGK~~G~~v~sskG~~vylL~PTpE-----LWTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiara 126 (314)
T KOG2915|consen 52 IGKPYGSKVASSKGKFVYLLQPTPE-----LWTLALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARA 126 (314)
T ss_pred ecCCccceeeecCCcEEEEecCChH-----HhhhhccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHh
Confidence 5555566655544 334476443 122222 233444444445555443 4789999987 77665554
Q ss_pred -CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC---CCCccEEEeccccccCCCCChHHHHHHHhhcc
Q 039233 101 -GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA---PEKADILVSELLGSFGDNELSPECLDGAQRFL 176 (359)
Q Consensus 101 -ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~---p~k~DiIVSEllGs~~~~El~~e~L~~a~r~L 176 (359)
|...++|..|..+.-++.|++-.+..+|++.|++++.|+..--. ..++|.|.-.+.. . -+.+-++.+.|
T Consensus 127 V~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPa---P----w~AiPha~~~l 199 (314)
T KOG2915|consen 127 VAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPA---P----WEAIPHAAKIL 199 (314)
T ss_pred hCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEEcCCC---h----hhhhhhhHHHh
Confidence 34459999999999999999999999999999999999988543 3478888843322 1 23555777788
Q ss_pred CCCeE
Q 039233 177 KQDGI 181 (359)
Q Consensus 177 kp~Gi 181 (359)
|.+|.
T Consensus 200 k~~g~ 204 (314)
T KOG2915|consen 200 KDEGG 204 (314)
T ss_pred hhcCc
Confidence 88775
No 230
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.28 E-value=0.018 Score=54.84 Aligned_cols=84 Identities=27% Similarity=0.341 Sum_probs=53.7
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEecccccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs~ 159 (359)
+++|+|+|- ...+|.... +|||-|.|+.|...+++ -|+ +++..+ +|. .+.++|+|.+ + ..
T Consensus 97 ~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg~----~vl~~~--~w~~~~~~fDvIsc--L-Nv 160 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KGF----TVLDID--DWQQTDFKFDVISC--L-NV 160 (265)
T ss_pred ceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CCC----eEEehh--hhhccCCceEEEee--h-hh
Confidence 478999874 344555443 89999999988655544 233 344333 243 3468999985 2 23
Q ss_pred CCCCChHH-HHHHHhhccCCCeEEE
Q 039233 160 GDNELSPE-CLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e-~L~~a~r~Lkp~Gi~I 183 (359)
+|.-..|- .|....+.|+|+|+.|
T Consensus 161 LDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 161 LDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred hhccCCHHHHHHHHHHHhCCCCEEE
Confidence 34434454 5678889999999843
No 231
>PRK00536 speE spermidine synthase; Provisional
Probab=96.21 E-value=0.025 Score=54.19 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=69.3
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh--cCCC-CeEEEEeCccccccCCCCccEEEecccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL--EGWE-KTVTIVSCDMRCWDAPEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~--n~~~-~~V~vi~~d~~~~~~p~k~DiIVSEllG 157 (359)
.+||=+|.|- .++-..|-. . +|+-||+++++++.+++-+-. .+++ .|++++.. +.+- ..+++|+||...+
T Consensus 74 k~VLIiGGGDGg~~REvLkh~-~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs~- 148 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQE- 148 (262)
T ss_pred CeEEEEcCCchHHHHHHHCcC-C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcCC-
Confidence 4677777653 444444543 4 999999999999999983321 1344 47888863 2221 2368999997632
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEccccceeeee
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQP 193 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~p 193 (359)
..++....+.|.|+|||+++=++...++.+
T Consensus 149 ------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 149 ------PDIHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred ------CChHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 235677888999999999999988777653
No 232
>PHA01634 hypothetical protein
Probab=96.14 E-value=0.0085 Score=51.33 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=48.7
Q ss_pred cCCcCCh--hHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccccC
Q 039233 84 RVPDEEA--SSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSFG 160 (359)
Q Consensus 84 ~v~D~g~--Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~~ 160 (359)
+|+|+|+ |..+..-...||+ +|+|+|++|......+++.+.|..=|+..-.. +|+. -+.+|+.+ |++-|
T Consensus 31 tV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~---iDCeG 102 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFV---MDCEG 102 (156)
T ss_pred EEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEE---EEccc
Confidence 5899996 4455555567899 99999999999999999988775444433222 3432 36789988 55544
No 233
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.09 E-value=0.019 Score=51.41 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=67.5
Q ss_pred CCcCChhH--HHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc------CCCCccEEEecc
Q 039233 85 VPDEEASS--LTTAAEETG-RKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD------APEKADILVSEL 155 (359)
Q Consensus 85 v~D~g~Gt--l~~~A~~ag-a~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~------~p~k~DiIVSEl 155 (359)
|++.|.|| +..+-.+-| +...++|||-|++-+..+.+. +.+ +.+|+||..+++ ....+|.|||-+
T Consensus 52 VlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~-~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 52 VLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPG-VNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred eEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCC-ccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 78888776 555444434 334899999999988776654 333 779999999886 235799999843
Q ss_pred -ccccCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 156 -LGSFGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 156 -lGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
|-+|--. -..++|+.+...|..||.++=-.|.
T Consensus 126 Pll~~P~~-~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 126 PLLNFPMH-RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccccCcHH-HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2222211 2456888898889999998766665
No 234
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.09 E-value=0.06 Score=42.69 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc--ccCCC--CccEEEeccccc
Q 039233 85 VPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC--WDAPE--KADILVSELLGS 158 (359)
Q Consensus 85 v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~--~~~p~--k~DiIVSEllGs 158 (359)
++|+|||+ ...++...+....++++|.++.++..++..... .....+.++.+|... ..... .+|++.+.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 78999987 324444443223899999999888775544332 111117888888876 55554 789984432222
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
... ....+..+.+.|+|+|.++-....
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 222 455778888999999987655444
No 235
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.08 E-value=0.028 Score=53.89 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=71.3
Q ss_pred CCcCChhH-----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-------------CCC
Q 039233 85 VPDEEASS-----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-------------APE 146 (359)
Q Consensus 85 v~D~g~Gt-----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-------------~p~ 146 (359)
.||+|||. +=..|++.....+|.-||.+|.++..++..+..+. +.+..+|++|+++-+ +.+
T Consensus 72 FLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r 150 (267)
T PF04672_consen 72 FLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGRTAYVQADLRDPEAILAHPEVRGLLDFDR 150 (267)
T ss_dssp EEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred EEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-CccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence 48999995 44666666667799999999999999999887653 346999999999853 346
Q ss_pred CccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeee
Q 039233 147 KADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQP 193 (359)
Q Consensus 147 k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~p 193 (359)
++=+++.-+|..+.|.+....++..-..+|.||..+.=+..+.-..|
T Consensus 151 PVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p 197 (267)
T PF04672_consen 151 PVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP 197 (267)
T ss_dssp --EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred CeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence 77788777777777777777788888899999988776666654333
No 236
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.06 E-value=0.024 Score=52.72 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhc-------ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CeEEEEeCc
Q 039233 70 YIQYQRAIGNALV-------DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE--KTVTIVSCD 138 (359)
Q Consensus 70 y~~Y~~AI~~~~~-------d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~--~~V~vi~~d 138 (359)
+..|++-|..++. .+||.+|-|. +.-+-+++... +=+-||.+|..+.. .+.+||. ++|.++.|.
T Consensus 83 Mm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~kr----mr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKR----MRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHH----HHhcccccccceEEEecc
Confidence 4556655554432 3799999875 44445555544 88999999976533 3457886 468899987
Q ss_pred cccc--cCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccchhh
Q 039233 139 MRCW--DAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKL 199 (359)
Q Consensus 139 ~~~~--~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l 199 (359)
=+++ +++ ..+|-|.-...+- .-|..-+..+++-|+|||+|++ +|+...+...+
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLkP~gv~------SyfNg~~~~~~ 213 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLKPEGVF------SYFNGLGADNL 213 (271)
T ss_pred hHhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcCCCceE------EEecCcccchh
Confidence 7775 233 4589998433321 1223445678889999999985 66666665443
No 237
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.029 Score=51.95 Aligned_cols=103 Identities=22% Similarity=0.200 Sum_probs=69.5
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCe-EEEEeCCHHHHHHHHHHHHhcC--------C-CCeEEEEeCccccccCC-CCcc
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLK-IYAVEKNPNAVVTLHSLVRLEG--------W-EKTVTIVSCDMRCWDAP-EKAD 149 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~-V~AVE~n~~a~~~a~~~~~~n~--------~-~~~V~vi~~d~~~~~~p-~k~D 149 (359)
..||+|+|| |+ ++|..-|+... +.+||.-++.++.+++++++.- | ..++.++.||.|....+ .++|
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YD 164 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYD 164 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcc
Confidence 569999998 54 55645565544 4999999999999999997632 2 24689999999997544 6899
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCe-EEEccc---cceeeeec
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDG-ISIPSS---YTSFIQPV 194 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~G-i~IP~~---~t~~~~pi 194 (359)
.|- +|. ..++....-..-||+|| ++||-. ++-++.-+
T Consensus 165 aIh---vGA-----aa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~ 205 (237)
T KOG1661|consen 165 AIH---VGA-----AASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQI 205 (237)
T ss_pred eEE---Ecc-----CccccHHHHHHhhccCCeEEEeecccCceeEEEee
Confidence 998 452 23444445445566655 566644 44444433
No 238
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.04 E-value=0.0072 Score=56.24 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=49.4
Q ss_pred CCcCCh---hHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-----CCccEEE
Q 039233 85 VPDEEA---SSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-----EKADILV 152 (359)
Q Consensus 85 v~D~g~---Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-----~k~DiIV 152 (359)
++|.-| |--..+|++.- .|+|||.+|.=+..|++|++--|..+||++|+||..++--. .++|.+.
T Consensus 98 iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 98 IVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred hhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 455433 33556777653 99999999999999999999889999999999999886322 3455665
No 239
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.98 E-value=0.022 Score=56.66 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=76.2
Q ss_pred cCCcCChhH-HH--HHHHHcCCCCeEEEEeCCHHHHHHHHHH--HHh---cCCC-CeEEEEeCccccc--cCCCCccEEE
Q 039233 84 RVPDEEASS-LT--TAAEETGRKLKIYAVEKNPNAVVTLHSL--VRL---EGWE-KTVTIVSCDMRCW--DAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt-l~--~~A~~aga~~~V~AVE~n~~a~~~a~~~--~~~---n~~~-~~V~vi~~d~~~~--~~p~k~DiIV 152 (359)
+|+-+|-|- |+ ..-+.-+.. +|+-||.+|.|++.++++ .++ +.+. -||+|+..|.-.| ...+++|.+|
T Consensus 292 ~vLvlGGGDGLAlRellkyP~~~-qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYPQVE-QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred eEEEEcCCchHHHHHHHhCCCcc-eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 455555443 32 232333344 899999999999999843 332 2233 4899999999998 3446999999
Q ss_pred eccccc--cCCCC-ChHHHHHHHhhccCCCeEEEccccceeeeec
Q 039233 153 SELLGS--FGDNE-LSPECLDGAQRFLKQDGISIPSSYTSFIQPV 194 (359)
Q Consensus 153 SEllGs--~~~~E-l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi 194 (359)
-++.+- ..... -+.|...-+.+.|+++|+|+-+....|..|-
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 887764 22112 2455666778999999999999998887774
No 240
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.94 E-value=0.029 Score=58.58 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=70.4
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEecccc
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELLG 157 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEllG 157 (359)
.++|+|||. +..+|.+. ++..++|||+....+..|.+.+...++.| +.++.+|++.+. .+..+|-|.-..-+
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~FPD 427 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILFPD 427 (506)
T ss_pred eEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEECCC
Confidence 469999987 55566555 55699999999988888888887778876 889999987543 34568887754333
Q ss_pred ccC-----CCC-ChHHHHHHHhhccCCCeEE
Q 039233 158 SFG-----DNE-LSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 158 s~~-----~~E-l~~e~L~~a~r~Lkp~Gi~ 182 (359)
-.- -.- ..++.|+...+.|||||.+
T Consensus 428 PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 428 PWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred CCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 311 111 3577888889999999974
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.92 E-value=0.028 Score=58.78 Aligned_cols=71 Identities=10% Similarity=0.166 Sum_probs=48.0
Q ss_pred cCCcCChhH---HHHHHHHc-------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc------CCCC
Q 039233 84 RVPDEEASS---LTTAAEET-------GRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD------APEK 147 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~a-------ga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~------~p~k 147 (359)
+|+|.+||+ +..++.+. +....|+|+|+++.++..|+.++...+ ...+.++++|..... ..++
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~~~ 112 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESYLDL 112 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccccccccCc
Confidence 689999987 33333222 112479999999999999999987654 223667766644321 1358
Q ss_pred ccEEEecc
Q 039233 148 ADILVSEL 155 (359)
Q Consensus 148 ~DiIVSEl 155 (359)
+|+||++.
T Consensus 113 fD~IIgNP 120 (524)
T TIGR02987 113 FDIVITNP 120 (524)
T ss_pred ccEEEeCC
Confidence 99999874
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.045 Score=51.52 Aligned_cols=98 Identities=26% Similarity=0.317 Sum_probs=65.4
Q ss_pred HHHHHHhh---cc-cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-CccccccC--
Q 039233 74 QRAIGNAL---VD-RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-CDMRCWDA-- 144 (359)
Q Consensus 74 ~~AI~~~~---~d-~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~d~~~~~~-- 144 (359)
++|+...- ++ .++|+|+.| ....|.+.||+ +|||||..-+ ++--.++. +.||.+++ .++|.+.+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~---Ql~~kLR~---d~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYG---QLHWKLRN---DPRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEccCC---ccCHhHhc---CCcEEEEecCChhhCCHHH
Confidence 45555432 33 469999766 88888899999 9999999754 23333442 34566554 57777753
Q ss_pred -CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 145 -PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 145 -p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+++|++|++. ||- -+..+|......|+|+|..+
T Consensus 141 ~~~~~d~~v~Dv--SFI---SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 141 FTEKPDLIVIDV--SFI---SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred cccCCCeEEEEe--ehh---hHHHHHHHHHHhcCCCceEE
Confidence 46889999753 222 13446777788899987654
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.0055 Score=63.12 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=45.5
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
.++|+-||| ++.+.+ .|++ +|++||.+|.|+.-|++|...||..+ .++|.|..+++
T Consensus 386 ~llDv~CGTG~iglala-~~~~-~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~ 443 (534)
T KOG2187|consen 386 TLLDVCCGTGTIGLALA-RGVK-RVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDL 443 (534)
T ss_pred EEEEEeecCCceehhhh-cccc-ceeeeecChhhcchhhhcchhcCccc-eeeeecchhhc
Confidence 468987777 444433 3566 99999999999999999999999988 99999966654
No 244
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.55 E-value=0.0096 Score=56.82 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=57.0
Q ss_pred cCCcCChhH-HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcC---CC------------------------CeEE-
Q 039233 84 RVPDEEASS-LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEG---WE------------------------KTVT- 133 (359)
Q Consensus 84 ~v~D~g~Gt-l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~---~~------------------------~~V~- 133 (359)
+++|+|+|. +. .+++.--.+ +|+..|-.+.-.+.+++-+++.+ |. ..|+
T Consensus 59 ~llDiGsGPtiy~~lsa~~~f~-~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~ 137 (256)
T PF01234_consen 59 TLLDIGSGPTIYQLLSACEWFE-EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQ 137 (256)
T ss_dssp EEEEES-TT--GGGTTGGGTEE-EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEE
T ss_pred EEEEeCCCcHHHhhhhHHHhhc-ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhce
Confidence 579999996 22 122221234 89999988877777666554321 10 1355
Q ss_pred EEeCcccccc-------CCCCccEEEeccc-cc-cCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 134 IVSCDMRCWD-------APEKADILVSELL-GS-FGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 134 vi~~d~~~~~-------~p~k~DiIVSEll-Gs-~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
|+.+|+++-. +|+++|+|+|=+. -+ ..+.+--...+....++|||||.+|=
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 8999998843 3567999997221 11 11222223355666789999999764
No 245
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.056 Score=53.88 Aligned_cols=91 Identities=27% Similarity=0.343 Sum_probs=70.4
Q ss_pred cCCcC--ChhH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEeccccc
Q 039233 84 RVPDE--EASS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLGS 158 (359)
Q Consensus 84 ~v~D~--g~Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllGs 158 (359)
+|+|. |+|. -.+.|..++.. +|++=|+||+|++++++|++.|.-++ ..+++.|.-.+ +...++|+|=-...||
T Consensus 55 ~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFGS 132 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFGS 132 (380)
T ss_pred EEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCCC
Confidence 56776 4444 56888888865 99999999999999999999884444 77888887765 3347899997555554
Q ss_pred cCCCCChHHHHHHHhhccCCCeEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
- +| .+|+|-+..+.+|++
T Consensus 133 P-----aP-FlDaA~~s~~~~G~l 150 (380)
T COG1867 133 P-----AP-FLDAALRSVRRGGLL 150 (380)
T ss_pred C-----ch-HHHHHHHHhhcCCEE
Confidence 2 34 899999999999884
No 246
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.13 E-value=0.025 Score=52.87 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=49.3
Q ss_pred HHHHHH-hhcc----cCCcCChhH-HHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-c-C
Q 039233 74 QRAIGN-ALVD----RVPDEEASS-LTT-AAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-D-A 144 (359)
Q Consensus 74 ~~AI~~-~~~d----~v~D~g~Gt-l~~-~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~-~ 144 (359)
++|++. ++.+ .+||||||| ||- .....| ...++||+||.|+++|.+. . ++ =.++.+||-+= . .
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~--e--~e--gdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER--E--LE--GDLILCDMGEGLPFR 109 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh--h--hh--cCeeeeecCCCCCCC
Confidence 455543 4444 579999999 542 233445 4899999999999999973 2 22 13789999862 1 2
Q ss_pred CCCccEEEe
Q 039233 145 PEKADILVS 153 (359)
Q Consensus 145 p~k~DiIVS 153 (359)
|..+|-+||
T Consensus 110 pGtFDg~IS 118 (270)
T KOG1541|consen 110 PGTFDGVIS 118 (270)
T ss_pred CCccceEEE
Confidence 578998886
No 247
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.84 E-value=0.045 Score=51.97 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=47.2
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEE
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIV 152 (359)
++|+|+|||. |+.-......+..++|+|+|..+++.+...+..-++..++.+. |...-.+++.+|+..
T Consensus 107 ~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~--Dl~~~~~~~~~DlaL 176 (251)
T PF07091_consen 107 DSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVR--DLLSDPPKEPADLAL 176 (251)
T ss_dssp SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE---TTTSHTTSEESEEE
T ss_pred chhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEe--eeeccCCCCCcchhh
Confidence 4689999997 5543333333459999999999999999998876666655544 655545667899987
No 248
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.79 E-value=0.071 Score=49.20 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc----c-----CCCCccEEE
Q 039233 85 VPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW----D-----APEKADILV 152 (359)
Q Consensus 85 v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~----~-----~p~k~DiIV 152 (359)
||++|+|| ...+|++.- ...=.--|.+++...-.+..+...+..+.-.-+.-|+.+- . .++.+|.|+
T Consensus 29 vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 29 VLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred EEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 99999998 778887773 4566777888877656666666666666444555555552 2 235899999
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE---ccccceeeeeccchhhhhhh
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI---PSSYTSFIQPVTASKLHNDV 203 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I---P~~~t~~~~pi~s~~l~~~~ 203 (359)
+==|=.+..-+...-++.++.+.|++||+++ |-.+.=-..+-+...+...+
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL 161 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH
Confidence 7222222223334446788899999999977 44444334444444443333
No 249
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.57 E-value=0.051 Score=53.90 Aligned_cols=118 Identities=21% Similarity=0.210 Sum_probs=74.6
Q ss_pred ccccCcHHHHHHHhcCcccHHHHHHHHHHhhc--ccCCcCChhH---H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q 039233 51 LMDNLEAQTYETFEKDSVKYIQYQRAIGNALV--DRVPDEEASS---L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVR 124 (359)
Q Consensus 51 l~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~~~--d~v~D~g~Gt---l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~ 124 (359)
+-|++ ..=+.++.|+.-...+--|..+... ++|+=+|+|. + ..+|+.+|++ +|+++|.+++-++.|++...
T Consensus 138 ~pd~~--~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~-~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 138 LPDGI--DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGAS-VVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCCCC--ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHHhCC
Confidence 34554 2224566777766644445555443 3688889998 2 3566778888 99999999988888776432
Q ss_pred hcCCCCeEEEEeCc-----cccccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 125 LEGWEKTVTIVSCD-----MRCWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 125 ~n~~~~~V~vi~~d-----~~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. +.+.....+ +.+......+|+++ |..| .+..+..+.+.++++|.+.
T Consensus 215 ~----~~~~~~~~~~~~~~~~~~t~g~g~D~vi-e~~G-------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 215 A----DVVVNPSEDDAGAEILELTGGRGADVVI-EAVG-------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred C----eEeecCccccHHHHHHHHhCCCCCCEEE-ECCC-------CHHHHHHHHHHhcCCCEEE
Confidence 1 212222221 11222234699998 6666 4668899999999999853
No 250
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.55 E-value=0.076 Score=49.97 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHhhccc----------CCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Q 039233 68 VKYIQYQRAIGNALVDR----------VPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 68 vry~~Y~~AI~~~~~d~----------v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi 135 (359)
.+++...++|--.+.|+ ++|+||+. ++.....-|.. +++-+|.|-.|++.++..- .+ +-.+.-.
T Consensus 49 ~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~q-dp--~i~~~~~ 124 (325)
T KOG2940|consen 49 QKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQ-DP--SIETSYF 124 (325)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccC-CC--ceEEEEE
Confidence 45555557776666553 57999976 66555555666 9999999999988776532 12 2234445
Q ss_pred eCccccccCC-CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 136 SCDMRCWDAP-EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 136 ~~d~~~~~~p-~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
-+|=+.++.. ..+|+|||- |+---.|. .|-++..+...|||+|.+|-+
T Consensus 125 v~DEE~Ldf~ens~DLiisS-lslHW~Nd-LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 125 VGDEEFLDFKENSVDLIISS-LSLHWTND-LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ecchhcccccccchhhhhhh-hhhhhhcc-CchHHHHHHHhcCCCccchhH
Confidence 5666655543 469999983 22211343 466888888899999998765
No 251
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.46 E-value=0.22 Score=47.87 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=31.0
Q ss_pred cCCcCChhH-HHHHHHH--cCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 039233 84 RVPDEEASS-LTTAAEE--TGRKLKIYAVEKNPNAVVTLHSLVRLE 126 (359)
Q Consensus 84 ~v~D~g~Gt-l~~~A~~--aga~~~V~AVE~n~~a~~~a~~~~~~n 126 (359)
+|+|.|+|. .+..|+. .+...++++||.|+.|.+.++..++..
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 589999986 3333332 122238999999999999999987653
No 252
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.36 E-value=0.053 Score=52.09 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC---CCCccEEEe
Q 039233 85 VPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA---PEKADILVS 153 (359)
Q Consensus 85 v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~---p~k~DiIVS 153 (359)
++|+ |+|.++..+.++|.+ .|+|+|.++.|+++.+.|.. + .++++|++++.. ..++|+|+.
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred EEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEe
Confidence 4555 555588888889977 89999999999988877642 2 178899999863 357999984
No 253
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.066 Score=55.12 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=72.3
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CC---CCccEEEeccccccCCCCChHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--AP---EKADILVSELLGSFGDNELSPE 167 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p---~k~DiIVSEllGs~~~~El~~e 167 (359)
..+.|...+.-.+|.|-|.|++++..-++|++.|+.++.|+..++|...+. .+ ..+|+|= |+.||. ...
T Consensus 124 slRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID---LDPyGs---~s~ 197 (525)
T KOG1253|consen 124 SLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID---LDPYGS---PSP 197 (525)
T ss_pred HHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe---cCCCCC---ccH
Confidence 346666654444899999999999999999999999999999999998863 33 7899997 555553 234
Q ss_pred HHHHHhhccCCCeEEEccccceee
Q 039233 168 CLDGAQRFLKQDGISIPSSYTSFI 191 (359)
Q Consensus 168 ~L~~a~r~Lkp~Gi~IP~~~t~~~ 191 (359)
.||+|-+.++.||++.=..-..++
T Consensus 198 FLDsAvqav~~gGLL~vT~TD~aV 221 (525)
T KOG1253|consen 198 FLDSAVQAVRDGGLLCVTCTDMAV 221 (525)
T ss_pred HHHHHHHHhhcCCEEEEEecchHh
Confidence 899999999999996655444433
No 254
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.15 E-value=0.14 Score=50.76 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCcCChhH--H-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccc-cccC
Q 039233 85 VPDEEASS--L-TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELL-GSFG 160 (359)
Q Consensus 85 v~D~g~Gt--l-~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEll-Gs~~ 160 (359)
.+|+|.|+ + -+...+.. +|-+|+-+..-+..++.... .| |+-+.|||-.= .| +.|+|+.-|+ |...
T Consensus 181 avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 181 AVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP-KGDAIWMKWILHDWT 250 (342)
T ss_pred EEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC-CcCeEEEEeecccCC
Confidence 37998876 3 34444553 68888888766655555443 22 88899999886 55 7899998875 6666
Q ss_pred CCCChHHHHHHHhhccCCCeEE-Eccccc
Q 039233 161 DNELSPECLDGAQRFLKQDGIS-IPSSYT 188 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~-IP~~~t 188 (359)
|++ +..+|..+.+-|+|||++ |....+
T Consensus 251 Ded-cvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 251 DED-CVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred hHH-HHHHHHHHHHhCCCCCEEEEEeccC
Confidence 655 566999999999998874 444433
No 255
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.05 E-value=0.027 Score=52.29 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=54.6
Q ss_pred cCCcCChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC----CCccEEEeccc-cc
Q 039233 84 RVPDEEASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP----EKADILVSELL-GS 158 (359)
Q Consensus 84 ~v~D~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p----~k~DiIVSEll-Gs 158 (359)
++|||||-+--.+..+.+- ..|++||.|+. . -.|.++|.-+..+| +++|+|++-++ .+
T Consensus 54 rlLEVGals~~N~~s~~~~-fdvt~IDLns~----------~------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTSGW-FDVTRIDLNSQ----------H------PGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred eEEeecccCCCCcccccCc-eeeEEeecCCC----------C------CCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 4688887532223333443 47999999872 0 23677787776554 68999996554 44
Q ss_pred cCCCCChHHHHHHHhhccCCCeE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
..+-..=-++|..+.++|+|+|.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCc
Confidence 44444556799999999999998
No 256
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.05 E-value=0.22 Score=49.57 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=56.4
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccccC
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSFG 160 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~~ 160 (359)
.++|+||++ .+..+.+.|+ +|+|||..+.+- .+.. ..+|+.+.+|.-.+.+ ++++|++||.+.-.
T Consensus 214 ~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~~-----~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~-- 281 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMAQ-----SLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK-- 281 (357)
T ss_pred EEEEeCCCCcHHHHHHHHcCC--EEEEEechhcCH-----hhhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC--
Confidence 579999865 6666666674 999999777321 2222 3569999999888876 67899999976532
Q ss_pred CCCChHHHHHHHhhccCCC
Q 039233 161 DNELSPECLDGAQRFLKQD 179 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~ 179 (359)
-..++.-..+||..|
T Consensus 282 ----P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 ----PARVAELMAQWLVNG 296 (357)
T ss_pred ----HHHHHHHHHHHHhcC
Confidence 234556667888665
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.18 Score=46.64 Aligned_cols=89 Identities=27% Similarity=0.364 Sum_probs=61.9
Q ss_pred cCCcCCh--hH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccEEEeccc
Q 039233 84 RVPDEEA--SS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~--Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~DiIVSEll 156 (359)
+||=+|+ || .|-.+--+| ..+|||||-++....-+-...++ ..+|--|-+|.+.-+ +-+++|+|....-
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDVIYQDVA 154 (231)
T ss_pred EEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccEEEEecC
Confidence 5666664 66 777777777 44999999999877666665543 345888889998743 3478999996533
Q ss_pred cccCCCCChHHHH-HHHhhccCCCeE
Q 039233 157 GSFGDNELSPECL-DGAQRFLKQDGI 181 (359)
Q Consensus 157 Gs~~~~El~~e~L-~~a~r~Lkp~Gi 181 (359)
- .+ -.+++ +.|..|||++|-
T Consensus 155 Q---p~--Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 155 Q---PN--QAEILADNAEFFLKKGGY 175 (231)
T ss_pred C---ch--HHHHHHHHHHHhcccCCe
Confidence 2 12 23344 778899999884
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.53 E-value=0.18 Score=49.38 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=49.4
Q ss_pred cCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--C----CCCccEEEec
Q 039233 84 RVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--A----PEKADILVSE 154 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~----p~k~DiIVSE 154 (359)
.++|.-+|- ...++.+.+. .+|+|+|.++.|+..|+++++. +.+++++++++..++. + ..++|.|+-.
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 567765543 2222344443 5999999999999999998764 6789999999998863 1 2469999865
No 259
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=0.14 Score=46.75 Aligned_cols=89 Identities=21% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccCCcCCh--hHHHHHH-HHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-cccccc---------CCCCcc
Q 039233 83 DRVPDEEA--SSLTTAA-EETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-DMRCWD---------APEKAD 149 (359)
Q Consensus 83 d~v~D~g~--Gtl~~~A-~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-d~~~~~---------~p~k~D 149 (359)
++|+|+|+ |+.+..| ++.+.+..|.+||.-+- ....+ ++++++ |+++-. +..++|
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCCCccc
Confidence 46899998 7777665 55667789999997541 12333 677777 776632 236899
Q ss_pred EEEeccccc-----cCCCCC----hHHHHHHHhhccCCCeEEE
Q 039233 150 ILVSELLGS-----FGDNEL----SPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 150 iIVSEllGs-----~~~~El----~~e~L~~a~r~Lkp~Gi~I 183 (359)
+|+|.+.-. ..|.+. +.+.|.-+-.+|+|+|.++
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999986533 334443 3334545567788888755
No 260
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.59 E-value=0.51 Score=45.46 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=63.2
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh----cC------------------------------
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL----EG------------------------------ 127 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~----n~------------------------------ 127 (359)
+||--|||. |+.--++.| ..|.|.|-|--|+...+-++.. +.
T Consensus 59 ~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 59 RVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred EEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 356667775 654434446 6999999999887555544331 00
Q ss_pred -----CCCeEEEEeCccccccCC----CCccEEEeccccccCCCC-ChHHHHHHHhhccCCCeEEE
Q 039233 128 -----WEKTVTIVSCDMRCWDAP----EKADILVSELLGSFGDNE-LSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 128 -----~~~~V~vi~~d~~~~~~p----~k~DiIVSEllGs~~~~E-l~~e~L~~a~r~Lkp~Gi~I 183 (359)
-..++.+..||..++-.+ +++|+||+- .|.|-. -+.+.|+...+.|||||+.|
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 012466677777776544 489999974 455433 36778888899999999866
No 261
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.25 E-value=0.18 Score=48.23 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEe
Q 039233 89 EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVS 153 (359)
Q Consensus 89 g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVS 153 (359)
|+|-++....+||-+ .|.|+|.++.|+.+.+.|.. .++.+|+++++ +|..+|+|+.
T Consensus 9 G~Gg~~~g~~~ag~~-~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~g 67 (335)
T PF00145_consen 9 GIGGFSLGLEQAGFE-VVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIG 67 (335)
T ss_dssp TTTHHHHHHHHTTEE-EEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEE
T ss_pred CccHHHHHHHhcCcE-EEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEe
Confidence 677788888999976 89999999999888877643 88999999986 4436999984
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.10 E-value=0.36 Score=45.53 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH---hcCCC-----CeEEEEeCccccc-c-CCCCccE
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR---LEGWE-----KTVTIVSCDMRCW-D-APEKADI 150 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~---~n~~~-----~~V~vi~~d~~~~-~-~p~k~Di 150 (359)
+.|+|.-+|- =+..++..|. +|+++|.||.++..+++=++ .+..- .||+++++|..++ . ....+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 3689987764 2222223573 89999999988877765443 22222 4899999999996 2 3468999
Q ss_pred EEeccc
Q 039233 151 LVSELL 156 (359)
Q Consensus 151 IVSEll 156 (359)
|--..|
T Consensus 155 VY~DPM 160 (234)
T PF04445_consen 155 VYFDPM 160 (234)
T ss_dssp EEE--S
T ss_pred EEECCC
Confidence 985544
No 263
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.22 Score=43.96 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=64.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccC
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFG 160 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~ 160 (359)
.+.+|+|.|- +..+|+|.|+. .-.++|.||-.+.+++-..-+.|.+.+..+...|+-.+++..--.++| ||
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~-~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vvi------Fg 146 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLR-PAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVI------FG 146 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCC-cCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEE------ee
Confidence 4678998876 88899999976 889999999888888877766788888999999988777643222333 33
Q ss_pred CCCChHHHHHHHhhccCCCeEEE
Q 039233 161 DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-+.+++..-+....-|..|..+|
T Consensus 147 aes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 147 AESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred hHHHHhhhHHHHHhhCcCCCeEE
Confidence 34445533333333444444444
No 264
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.61 E-value=0.77 Score=44.78 Aligned_cols=89 Identities=17% Similarity=0.303 Sum_probs=53.4
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEecccc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllG 157 (359)
++|+=.|+|. ...+|+..|++ +|++++.+++-.+.|++. |....|..-..+..++. ....+|+++ |..|
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~-~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vi-d~~G 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAA-EIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSF-EVSG 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc-EEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEE-ECCC
Confidence 4566678876 33556667876 899999999777666542 33221111011122211 123589887 3555
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+ +..+..+.+.|+++|+++=
T Consensus 245 ~-------~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 H-------PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred C-------HHHHHHHHHHhhcCCEEEE
Confidence 2 4567778889999998763
No 265
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=0.22 Score=44.57 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=61.1
Q ss_pred cCCcCChhH--HH--HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CeEEEEeCccccc---cCCCCccEEEec
Q 039233 84 RVPDEEASS--LT--TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE--KTVTIVSCDMRCW---DAPEKADILVSE 154 (359)
Q Consensus 84 ~v~D~g~Gt--l~--~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~--~~V~vi~~d~~~~---~~p~k~DiIVSE 154 (359)
+|+++|.|- |+ |.|.+|..+ .|.--|-|+.+++-.++++..|... .++.++.-+...- ....++|+|++
T Consensus 32 ~ilelgggft~laglmia~~a~~~-~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla- 109 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAPDS-SVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA- 109 (201)
T ss_pred HHHHhcCchhhhhhhheeeecCCc-eEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe-
Confidence 478889885 32 667777655 8999999999999999888766222 2333333322221 12348999996
Q ss_pred cccccCCCCChHHHHHHHhhccCCCeE
Q 039233 155 LLGSFGDNELSPECLDGAQRFLKQDGI 181 (359)
Q Consensus 155 llGs~~~~El~~e~L~~a~r~Lkp~Gi 181 (359)
-++.--.|.-....+....+|+|.|.
T Consensus 110 -ADClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 110 -ADCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred -ccchhHHHHHHHHHHHHHHHhCcccc
Confidence 45522223333355677899999887
No 266
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.19 E-value=0.47 Score=39.18 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=59.6
Q ss_pred hH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc-------cccCCCCccEEEeccccccCCC
Q 039233 91 SS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR-------CWDAPEKADILVSELLGSFGDN 162 (359)
Q Consensus 91 Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~-------~~~~p~k~DiIVSEllGs~~~~ 162 (359)
|. ..++|+..| .+|++++.++.-.+.+++ .|- + .++..+-. ++.....+|++| |..|
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga-~--~~~~~~~~~~~~~i~~~~~~~~~d~vi-d~~g----- 67 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGA-D--HVIDYSDDDFVEQIRELTGGRGVDVVI-DCVG----- 67 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTE-S--EEEETTTSSHHHHHHHHTTTSSEEEEE-ESSS-----
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcc-c--ccccccccccccccccccccccceEEE-EecC-----
Confidence 44 456777788 499999999976655554 331 2 22333222 222335799998 4555
Q ss_pred CChHHHHHHHhhccCCCeEEEccccce-eeeeccchhhh
Q 039233 163 ELSPECLDGAQRFLKQDGISIPSSYTS-FIQPVTASKLH 200 (359)
Q Consensus 163 El~~e~L~~a~r~Lkp~Gi~IP~~~t~-~~~pi~s~~l~ 200 (359)
.++.+..+.+.|+++|.++=-.... ...++....++
T Consensus 68 --~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~ 104 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLM 104 (130)
T ss_dssp --SHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHH
T ss_pred --cHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHH
Confidence 3678999999999999977666555 45555544444
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.68 E-value=0.86 Score=40.96 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHHHHhh--cccCCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 039233 71 IQYQRAIGNAL--VDRVPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHS 121 (359)
Q Consensus 71 ~~Y~~AI~~~~--~d~v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~ 121 (359)
+.-++.|...- .|.|||- |.||.+.+|.+.| + +-+++|.++..+++|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-R-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcC-C-eEEEEeCCHHHHHHhcC
Confidence 33444554332 2689986 7778999999998 3 79999999999988875
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=89.26 E-value=0.75 Score=44.28 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=35.7
Q ss_pred ccCCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q 039233 83 DRVPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL 125 (359)
Q Consensus 83 d~v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~ 125 (359)
|.|||- |.||.+.+|.+.| + +-+++|++++.++.|++++..
T Consensus 210 D~VLDPF~GSGTT~~AA~~lg-R-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 210 DIVLDPFAGSFTTGAVAKASG-R-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CEEEECCCCCcHHHHHHHHcC-C-CEEEEeCCHHHHHHHHHHHHh
Confidence 689996 7778889999998 3 899999999999999999863
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.79 E-value=2.4 Score=44.49 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred cCCcCChhHH----HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-c--------cccccC------
Q 039233 84 RVPDEEASSL----TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-D--------MRCWDA------ 144 (359)
Q Consensus 84 ~v~D~g~Gtl----~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-d--------~~~~~~------ 144 (359)
+|+=+|+|.+ ..+|...|+ +|+++|.+++..+.+++ ++-+...++. + .++...
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes------lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES------MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH------cCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 5677888872 355667785 79999999987666554 2333222211 1 111110
Q ss_pred -------CCCccEEEeccccccCCCCChHHHH-HHHhhccCCCeEEEccc
Q 039233 145 -------PEKADILVSELLGSFGDNELSPECL-DGAQRFLKQDGISIPSS 186 (359)
Q Consensus 145 -------p~k~DiIVSEllGs~~~~El~~e~L-~~a~r~Lkp~Gi~IP~~ 186 (359)
-..+|++|. ..|.-+ ...|..+ ..+-+.+||||+++=-.
T Consensus 239 ~~~~~~~~~gaDVVIe-tag~pg--~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 239 MALFAEQAKEVDIIIT-TALIPG--KPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHhccCCCCEEEE-CCCCCc--ccCcchHHHHHHHhcCCCCEEEEEc
Confidence 135999984 444322 2245554 77788999999865433
No 270
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.75 E-value=1.3 Score=45.05 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=72.2
Q ss_pred cCCcCCh---h-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEecc-
Q 039233 84 RVPDEEA---S-SLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSEL- 155 (359)
Q Consensus 84 ~v~D~g~---G-tl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEl- 155 (359)
+|+|.-+ | |.-+||..- ....|||-|+|.+-+..++.|+.+-|..+ -.+++.|.+++. .+..+|.|.-..
T Consensus 244 RIlDmcAAPGGKTt~IAalMk-n~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDRVLLDAP 321 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMK-NTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDRVLLDAP 321 (460)
T ss_pred eecchhcCCCchHHHHHHHHc-CCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccceeeecCC
Confidence 5666543 2 233444333 34499999999999999999999888877 667788887652 334789887332
Q ss_pred -ccc--------cCCCC----------ChHHHHHHHhhccCCCeEEEccccceeeee
Q 039233 156 -LGS--------FGDNE----------LSPECLDGAQRFLKQDGISIPSSYTSFIQP 193 (359)
Q Consensus 156 -lGs--------~~~~E----------l~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~p 193 (359)
-|. +..++ +-.+.|..|-..+|+||+++=+.+++-+.-
T Consensus 322 CSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 322 CSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred CCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 121 11111 234567788888999999998888766553
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.66 E-value=3.6 Score=38.99 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=50.1
Q ss_pred CCcCChhH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccccccC
Q 039233 85 VPDEEASS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELLGSFG 160 (359)
Q Consensus 85 v~D~g~Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEllGs~~ 160 (359)
++=+|-.- .|.+++..|...+|+.+|+++-.++..++..++.|+. |+.++.|.|+-- +-+++|++++..-=+.
T Consensus 48 il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~- 124 (243)
T PF01861_consen 48 ILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTDPPYTP- 124 (243)
T ss_dssp EEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---SSH-
T ss_pred EEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeCCCCCH-
Confidence 45555442 3344333343349999999999999999999988886 999999999842 2368999998543321
Q ss_pred CCCChHHHHHHHhhccCCCe
Q 039233 161 DNELSPECLDGAQRFLKQDG 180 (359)
Q Consensus 161 ~~El~~e~L~~a~r~Lkp~G 180 (359)
|.+.=.+..+-..||..|
T Consensus 125 --~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 125 --EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --HHHHHHHHHHHHTB-STT
T ss_pred --HHHHHHHHHHHHHhCCCC
Confidence 223324455566777655
No 272
>PRK13699 putative methylase; Provisional
Probab=87.01 E-value=1.8 Score=40.46 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhh--cccCCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q 039233 69 KYIQYQRAIGNAL--VDRVPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL 125 (359)
Q Consensus 69 ry~~Y~~AI~~~~--~d~v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~ 125 (359)
+.+..++.|...- .|.|+|- |+||...+|.+.|+ +.+++|+++.-++.|.+++++
T Consensus 149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 3555556665432 2678886 66778889999983 789999999999999998865
No 273
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.91 E-value=0.64 Score=44.18 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=56.3
Q ss_pred cCCcCCh--hH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccEEEeccc
Q 039233 84 RVPDEEA--SS-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADILVSELL 156 (359)
Q Consensus 84 ~v~D~g~--Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~DiIVSEll 156 (359)
+||=+|+ || +|-.+---|...-|||||-++-+=..+-...+ .-.+ |.-|-.|.|.-. +-.-+|+|+|.+-
T Consensus 159 KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtN-iiPIiEDArhP~KYRmlVgmVDvIFaDva 235 (317)
T KOG1596|consen 159 KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTN-IIPIIEDARHPAKYRMLVGMVDVIFADVA 235 (317)
T ss_pred eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCC-ceeeeccCCCchheeeeeeeEEEEeccCC
Confidence 4565665 44 66666677877799999999855443333222 2334 555666777531 1135788887654
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-.-. .--+-..|+.|||++|-++
T Consensus 236 qpdq----~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 236 QPDQ----ARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred Cchh----hhhhhhhhhhhhccCCeEE
Confidence 4311 1112256789999998754
No 274
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.47 E-value=3.6 Score=42.61 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=66.2
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEec-ccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVSE-LLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVSE-llGs~ 159 (359)
+++-.|||- |+.--.+.|-. .|+-+|.|+.++........+ -..-+.+...||....++ +.+|+++-+ .++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~-dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE-DITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC-CceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 678899996 77777778876 899999999877666655421 223488899999988765 568888842 23333
Q ss_pred CCCCC-------hHHHHHHHhhccCCCeEE
Q 039233 160 GDNEL-------SPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 160 ~~~El-------~~e~L~~a~r~Lkp~Gi~ 182 (359)
...|. ....++.+.|.|+++|+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~ 157 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKY 157 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEE
Confidence 32222 123456677889999983
No 275
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.37 E-value=1.2 Score=42.30 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE--eCccccccCCCCccEEEeccc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIV--SCDMRCWDAPEKADILVSELL 156 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi--~~d~~~~~~p~k~DiIVSEll 156 (359)
++|+=.|+|. ..++|+..|++ +|++++.++.-.+.|++ .|....+..- ...+++......+|+++ |..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vi-d~~ 195 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAA-RVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVAL-EFS 195 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEE-ECC
Confidence 4566668776 34566677876 79999998865555544 2332211100 01111122234589988 344
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
| .+..+..+.+.|+++|.++=-
T Consensus 196 G-------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 196 G-------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred C-------ChHHHHHHHHHhcCCCEEEEe
Confidence 4 245777788899999987643
No 276
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.27 E-value=2.6 Score=41.20 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=51.5
Q ss_pred ccCCcCChhHH----HHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccc
Q 039233 83 DRVPDEEASSL----TTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLG 157 (359)
Q Consensus 83 d~v~D~g~Gtl----~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllG 157 (359)
++|+=.|+|.+ +.+|++ .|+. +|++++.++.-.+.|++ .+. +..+. + +.....+|+|| |..|
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~-~vi~~~~~~~k~~~a~~----~~~---~~~~~-~---~~~~~g~d~vi-D~~G 231 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPES-KLVVFGKHQEKLDLFSF----ADE---TYLID-D---IPEDLAVDHAF-ECVG 231 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCC-cEEEEeCcHhHHHHHhh----cCc---eeehh-h---hhhccCCcEEE-ECCC
Confidence 56777888872 244554 4655 89999999865555543 111 11221 1 11112489888 5565
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ...+..+..+.+.|+++|+++
T Consensus 232 ~----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 232 G----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred C----CccHHHHHHHHHhCcCCcEEE
Confidence 2 113557888889999999976
No 277
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.52 E-value=1.2 Score=43.11 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=50.9
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc---cccccCCCCccEEEecc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD---MRCWDAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d---~~~~~~p~k~DiIVSEl 155 (359)
++|+=.|+|. +..+|+..|++ +|++++.+++-.+.|++ .|....+..-..+ ++++.....+|+++- .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid-~ 238 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAE-DVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVAIE-C 238 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEEEE-C
Confidence 3555557776 34667778876 69999999875555543 2332211111111 112222246999983 3
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| .+..+..+.+.|+++|.++
T Consensus 239 ~g-------~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 239 SG-------NTAARRLALEAVRPWGRLV 259 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEE
Confidence 44 2335566778899999876
No 278
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.47 E-value=1.1 Score=40.14 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=60.7
Q ss_pred cCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh--------cCC--------CCeEEEEeCccccccCCC
Q 039233 87 DEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL--------EGW--------EKTVTIVSCDMRCWDAPE 146 (359)
Q Consensus 87 D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~--------n~~--------~~~V~vi~~d~~~~~~p~ 146 (359)
=+|+|+ ++..++++| .+|..+|.|+++++.+++.++. ..+ -++++ +..|+.+..
T Consensus 4 ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--- 77 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--- 77 (180)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC---
T ss_pred EEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh---
Confidence 368887 566667777 6999999999999888887764 111 12455 445555442
Q ss_pred CccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccc
Q 039233 147 KADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTA 196 (359)
Q Consensus 147 k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s 196 (359)
.+|+|| |.+- .+-++-.+++....+.+.|+.++.=+..+.-+..+.+
T Consensus 78 ~adlVi-Eai~--E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~ 124 (180)
T PF02737_consen 78 DADLVI-EAIP--EDLELKQELFAELDEICPPDTILASNTSSLSISELAA 124 (180)
T ss_dssp TESEEE-E-S---SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT
T ss_pred hhheeh-hhcc--ccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh
Confidence 689888 3321 1222345677777888899998877766655555543
No 279
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.29 E-value=2.5 Score=45.45 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=38.3
Q ss_pred eEEEEeCccccc--cCCCCccEEEeccccccC----CCCChHHHHHHHhhccCCCeEEEc
Q 039233 131 TVTIVSCDMRCW--DAPEKADILVSELLGSFG----DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 131 ~V~vi~~d~~~~--~~p~k~DiIVSEllGs~~----~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+++++.||+++. ++..++|++. ++.|. .+.-.+++|....++++|||+++-
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~---lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWF---LDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEE---eCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 566899999884 2345799998 67665 222357788889999999999774
No 280
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.26 E-value=1.5 Score=42.93 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC--CCccEEEe
Q 039233 89 EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP--EKADILVS 153 (359)
Q Consensus 89 g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p--~k~DiIVS 153 (359)
|+|-++....+||-+ .|.|+|.++.|+++.+.|. .+ +++++|++++... .++|+++.
T Consensus 7 G~GG~~~Gl~~aG~~-~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 7 GIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CccHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEe
Confidence 556588888889966 6889999999988877753 33 5577999998632 36899984
No 281
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.88 E-value=2.4 Score=40.77 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=49.5
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs 158 (359)
++|+=+|+|. ..++|+..|++ .|++++.++.-.+.|++. .++.- .+. ....+|+|+ |..|+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~-~v~~~~~~~~rl~~a~~~----------~~i~~--~~~-~~~g~Dvvi-d~~G~ 210 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGS-PPAVWETNPRRRDGATGY----------EVLDP--EKD-PRRDYRAIY-DASGD 210 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHhhhhc----------cccCh--hhc-cCCCCCEEE-ECCCC
Confidence 3566668876 34566777877 788999987655444321 11111 110 234689888 55553
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEE
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+..++.+.+.|+++|.++
T Consensus 211 -------~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 211 -------PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred -------HHHHHHHHHhhhcCcEEE
Confidence 446778888999999976
No 282
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.49 E-value=0.71 Score=43.55 Aligned_cols=69 Identities=29% Similarity=0.297 Sum_probs=44.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---------CCCCccEEEecc-ccccCCCC----ChHHHHH
Q 039233 105 KIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---------APEKADILVSEL-LGSFGDNE----LSPECLD 170 (359)
Q Consensus 105 ~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---------~p~k~DiIVSEl-lGs~~~~E----l~~e~L~ 170 (359)
+|+|||.-++| ..++ |.-+++|++... ..+|+|+|||.= -+.-|.++ .-.++|.
T Consensus 76 kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLll 143 (294)
T KOG1099|consen 76 KIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLL 143 (294)
T ss_pred cEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHH
Confidence 69999998853 2444 888999998864 237999999852 12223222 1223443
Q ss_pred H----HhhccCCCeEEEcc
Q 039233 171 G----AQRFLKQDGISIPS 185 (359)
Q Consensus 171 ~----a~r~Lkp~Gi~IP~ 185 (359)
+ +...|||||.++--
T Consensus 144 aAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 144 AALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHhheecCCCeeehh
Confidence 3 45789999987643
No 283
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=84.19 E-value=1.5 Score=37.37 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHcCCCCeEEEEeCCHHHHHHHHHH--HHhcCCCCeEEEEeCcc
Q 039233 98 EETGRKLKIYAVEKNPNAVVTLHSL--VRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 98 ~~aga~~~V~AVE~n~~a~~~a~~~--~~~n~~~~~V~vi~~d~ 139 (359)
++.+...+|+|+|.+|..+..++++ +..|+-.+.++++....
T Consensus 18 ~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 18 KKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp HHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred HHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 4566666999999999999999998 66554433455555443
No 284
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.48 E-value=3.6 Score=40.33 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc------CCCCccEEEec
Q 039233 97 AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD------APEKADILVSE 154 (359)
Q Consensus 97 A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~------~p~k~DiIVSE 154 (359)
..+.+...+++|+|.+|.|++.|+++... +++|+++|++...++. ..+++|-|+-.
T Consensus 42 L~~l~~~~~li~~DrD~~Ai~~a~~~l~~--~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 42 LEKLPDLGRLIGIDRDPQAIAIAKERLKE--FDGRVTLVHGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHhCCCCCeEEEEcCCHHHHHHHHHHhhc--cCCcEEEEeCcHHHHHHHHHhcCCCceeEEEEe
Confidence 34444444899999999999999999875 5689999999988863 12578888754
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.23 E-value=1.7 Score=42.82 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCC----CccEEEe
Q 039233 85 VPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPE----KADILVS 153 (359)
Q Consensus 85 v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~----k~DiIVS 153 (359)
++|+ |+|-+++...++|.+ -|.|+|.+|.|+.+-+.|.. + -.++.+|++++...+ ++|+|+.
T Consensus 6 ~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~-----~-~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 6 VIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFP-----H-GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred EEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCC-----C-CceeechHhhcChhhccccCCCEEEe
Confidence 4555 555588888889977 89999999998888776643 2 567889998876433 7999984
No 286
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.81 E-value=1.3 Score=43.64 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc----c--CCCCccEEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW----D--APEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~----~--~p~k~DiIV 152 (359)
+.|+=.|+|. .+.+|+..|++ +|++++.++.-.+.|++ .|.. .++..+-.++ . .+..+|+++
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGAS-QVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 3555567765 34566777876 89999999876655543 2332 2222221111 0 123689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
|..|. ++.+..+.+.|+++|.++--
T Consensus 265 -d~~G~-------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 265 -EMAGS-------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred -ECCCC-------hHHHHHHHHHHhcCCEEEEE
Confidence 34442 35677788899999997643
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=80.27 E-value=1.7 Score=45.27 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcc--------cCCcCChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCeEEEEeCcc-
Q 039233 70 YIQYQRAIGNALVD--------RVPDEEASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-EGWEKTVTIVSCDM- 139 (359)
Q Consensus 70 y~~Y~~AI~~~~~d--------~v~D~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-n~~~~~V~vi~~d~- 139 (359)
-..|-+.|.+.+.. .+||+|||+-|.+|.....++.+..+-.+.. ..++..++. -| |-.+.+-+
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~--~~~qvqfaleRG----vpa~~~~~~ 171 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDE--HEAQVQFALERG----VPAMIGVLG 171 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccC--CchhhhhhhhcC----cchhhhhhc
Confidence 34677777776632 3699999986666655543334433333321 122222221 13 33232322
Q ss_pred -ccccCC-CCccEEEec-cccccCCCCChHHHHHHHhhccCCCeEEEcccccee
Q 039233 140 -RCWDAP-EKADILVSE-LLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSF 190 (359)
Q Consensus 140 -~~~~~p-~k~DiIVSE-llGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~ 190 (359)
+.+..| .-+|+|=|- .+-....++.+ .|..++|.|+|||.++=++--.|
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccc--eeehhhhhhccCceEEecCCccc
Confidence 223323 457887541 11112233322 56788999999999987776666
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=80.16 E-value=2.3 Score=42.34 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=54.2
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc--------cccCCCCccE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR--------CWDAPEKADI 150 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~--------~~~~p~k~Di 150 (359)
++|+..|+|+ +..+|...|++ +|++++.++...+.+++.. + +.++..+-. ++.....+|+
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~-~vi~~~~~~~~~~~~~~~~-----~--~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE-RVIAIDRVPERLEMARSHL-----G--AETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHcC-----C--cEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 3577778876 34556666755 7999999998777766531 1 133332221 2222236899
Q ss_pred EEeccccccC--------------CCCChHHHHHHHhhccCCCeEEE
Q 039233 151 LVSELLGSFG--------------DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 151 IVSEllGs~~--------------~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++- ..|.-. ........+..+.+.|+++|.++
T Consensus 258 vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 258 CID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred EEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 985 443200 00112456777788999999854
No 289
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.81 E-value=1.9 Score=42.28 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=52.7
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADIL 151 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiI 151 (359)
++|+=.|+|. ...+|+..|++ +|++++.++.-.+.|++ .|. + .++...-.+ ......+|++
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~-~Vi~~~~~~~~~~~~~~----~Ga-~--~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGAS-KIIAVDIDDRKLEWARE----FGA-T--HTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----cCC-c--eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 4566567776 34566667866 79999999876555543 232 2 222221111 1122368998
Q ss_pred EeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 152 VSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 152 VSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+ |..|. ++.+..+.+.|+++|+++--.
T Consensus 250 i-d~~g~-------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 250 I-DAVGR-------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred E-ECCCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 8 35552 346777778899999876443
No 290
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.83 E-value=9.3 Score=35.66 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=53.1
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-c-cCCCCccEEEeccccccCCCCChHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-W-DAPEKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~-~~p~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
|+.||.+.| .+++.|--++......++.+...+..+.++++.++..+ + .--+.+|.+| +++=. ++...++|+
T Consensus 61 LaaAAr~Tg--GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v---VDc~~-~d~~~~vl~ 134 (218)
T PF07279_consen 61 LAAAARQTG--GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV---VDCKR-EDFAARVLR 134 (218)
T ss_pred HHHHHHhcC--CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE---EeCCc-hhHHHHHHH
Confidence 566777777 47888888877766777777767788888999898543 3 2235799998 45422 222226776
Q ss_pred HHhhccCCCeE
Q 039233 171 GAQRFLKQDGI 181 (359)
Q Consensus 171 ~a~r~Lkp~Gi 181 (359)
.++ |.|.|-
T Consensus 135 ~~~--~~~~Ga 143 (218)
T PF07279_consen 135 AAK--LSPRGA 143 (218)
T ss_pred Hhc--cCCCce
Confidence 654 444443
No 291
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=78.03 E-value=2 Score=42.44 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=42.4
Q ss_pred CCcCChhHHH----HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 85 VPDEEASSLT----TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 85 v~D~g~Gtl~----~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
-+|+|+|+.. .=|.+.+ ..-.|.|.+...+..|++++..|++.++|.+|+..-
T Consensus 106 GiDIgtgasci~~llg~rq~n--~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNN--WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred eeeccCchhhhHHhhhchhcc--ceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 3799999832 2233343 578999999999999999999999999999998743
No 292
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.98 E-value=7.7 Score=38.64 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=54.2
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEeccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGS 158 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs 158 (359)
+|.=+|.|- ..+.|+..| .+|+|++.|++-.+.|++.-+ ...+...|....+ ..+++|+|+. +.+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~-tv~- 238 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIID-TVG- 238 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEE-CCC-
Confidence 555555543 235666677 499999999987777776422 1222222222221 2345999985 222
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
+..+..+.+.|+++|.++--..-
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 34677888999999997655544
No 293
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.36 E-value=12 Score=37.19 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=57.0
Q ss_pred ccCCcCChhH---HHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc--ccc-------cCCCCcc
Q 039233 83 DRVPDEEASS---LTTA-AEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM--RCW-------DAPEKAD 149 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~-A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~--~~~-------~~p~k~D 149 (359)
.+||-.|+|. ++++ |+-.||+ +|..+|.+++.++.|++. |... +.-+.... .++ .....+|
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~-~VVi~d~~~~Rle~Ak~~----Ga~~-~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGAS-DVVITDLVANRLELAKKF----GATV-TDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCC-cEEEeecCHHHHHHHHHh----CCeE-EeeccccccHHHHHHHHHhhccccCCC
Confidence 4688888886 4444 5556888 999999999999988872 3322 22222111 111 0123467
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
+.+. .- ...-++.+|-..++.+|.++=...
T Consensus 245 ~~~d-Cs-------G~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 245 VTFD-CS-------GAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred eEEE-cc-------CchHHHHHHHHHhccCCEEEEecc
Confidence 7763 22 244589999999999998654443
No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.77 E-value=4 Score=39.61 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=50.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc------cccccCCCCccEEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD------MRCWDAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d------~~~~~~p~k~DiIV 152 (359)
++|+=.|+|. +..+|...|++ .|++++.++.-.+.+++ .|.. .++..+ +.+......+|.+|
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAK-SVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCCCCeEE
Confidence 3555557776 34667778876 78999998876555433 2322 122211 11111224678555
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
-|..|. +..+..+.+.|+++|.++=
T Consensus 234 ~d~~G~-------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 234 LETAGV-------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred EECCCC-------HHHHHHHHHHhhcCCEEEE
Confidence 455553 3467777889999999763
No 295
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.02 E-value=4 Score=39.13 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.6
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcC--CC-----------------CeEEEEeCcccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEG--WE-----------------KTVTIVSCDMRC 141 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~--~~-----------------~~V~vi~~d~~~ 141 (359)
|.=+|+|+ ++..++++| .+|+.+|.|++.++.+++.++.+. +. .+++.. .|..
T Consensus 6 I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 81 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE- 81 (291)
T ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH-
Confidence 44568886 455556666 589999999998877666544321 10 112221 2221
Q ss_pred ccCCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 142 WDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 142 ~~~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.-..+|+||- .+.. +.+...+++....+.++++.+++
T Consensus 82 --~~~~aDlVie-av~e--~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 --SLSDADFIVE-AVPE--KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --HhCCCCEEEE-cCcC--cHHHHHHHHHHHHhhCCCCeEEE
Confidence 1256898883 2221 11223556666667788888776
No 296
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.61 E-value=4.2 Score=40.87 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=54.6
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC---cc----ccccCCCCccEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC---DM----RCWDAPEKADIL 151 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~---d~----~~~~~p~k~DiI 151 (359)
++|+=.|+|. +..+|...|++ .|++++.++.-.+.|++ -|. + .+... +. .++.....+|++
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~-~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~~~g~Dvv 258 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAA-VVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILGEPEVDCA 258 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcCCCCCcEE
Confidence 3444478876 34667778877 67788988765555554 233 2 23321 11 112222468998
Q ss_pred EeccccccC-------CCCChHHHHHHHhhccCCCeEEEc
Q 039233 152 VSELLGSFG-------DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 152 VSEllGs~~-------~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
| |..|+-. ..+..+..+..+.+.++++|.++-
T Consensus 259 i-d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 259 V-DCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred E-ECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 8 4666421 112223578888899999999764
No 297
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.19 E-value=6.5 Score=37.88 Aligned_cols=100 Identities=11% Similarity=0.204 Sum_probs=57.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-------C-C--------CCeEEEEeCcccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-------G-W--------EKTVTIVSCDMRCWD 143 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-------~-~--------~~~V~vi~~d~~~~~ 143 (359)
+|-=+|+|+ ++...+++| ..|+.+|.++++.+.+++.+++. | . -.++++ ..|...+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 345568887 455556666 69999999999988877665431 1 0 012332 2343222
Q ss_pred CCCCccEEEeccccccCCCCChHHHHHHHhhcc-CCCeEEEccccceeee
Q 039233 144 APEKADILVSELLGSFGDNELSPECLDGAQRFL-KQDGISIPSSYTSFIQ 192 (359)
Q Consensus 144 ~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~L-kp~Gi~IP~~~t~~~~ 192 (359)
..+|+|+- .+- .+.+.-.+++....+.+ +|+.++.=++.++-+.
T Consensus 83 --~~~d~ViE-av~--E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~ 127 (286)
T PRK07819 83 --ADRQLVIE-AVV--EDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM 127 (286)
T ss_pred --CCCCEEEE-ecc--cCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 57899883 221 12223344566667777 7777765554444333
No 298
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=73.60 E-value=5.9 Score=38.96 Aligned_cols=49 Identities=10% Similarity=0.291 Sum_probs=37.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-------CCCCccEEEec
Q 039233 104 LKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-------APEKADILVSE 154 (359)
Q Consensus 104 ~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-------~p~k~DiIVSE 154 (359)
.+|+|+|.+|.|+..|++++.. +.+++++++++..++. ...++|-|+-.
T Consensus 45 ~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 45 GRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp -EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHHTTTTS-EEEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHHccCCCccCEEEEc
Confidence 5999999999999999887653 6899999999998863 23578888854
No 299
>PLN02740 Alcohol dehydrogenase-like
Probab=73.31 E-value=10 Score=37.66 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=50.6
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc-----c----ccccCCCCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD-----M----RCWDAPEKAD 149 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d-----~----~~~~~p~k~D 149 (359)
++|+=.|+|. +..+|+..|++ +|++++.+++-.+.|++ -|... ++..+ . .++.. ..+|
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~~v~~~~~-~g~d 270 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGAS-KIIGVDINPEKFEKGKE----MGITD---FINPKDSDKPVHERIREMTG-GGVD 270 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-cEEEEcCChHHHHHHHH----cCCcE---EEecccccchHHHHHHHHhC-CCCC
Confidence 4566668876 34566677765 89999999876666543 23322 22211 1 11111 2689
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCC-eEEEc
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQD-GISIP 184 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~IP 184 (359)
+++- ..| .++.+..+.+.++++ |.++-
T Consensus 271 vvid-~~G-------~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 271 YSFE-CAG-------NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred EEEE-CCC-------ChHHHHHHHHhhhcCCCEEEE
Confidence 8873 444 345777777788886 87553
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=72.79 E-value=10 Score=36.04 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=49.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc---ccCCCCccEEEecc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC---WDAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~---~~~p~k~DiIVSEl 155 (359)
++|+..|+|. +..+|.+.| .+|++++.++...+.+++ .+....+.....+..+ ......+|+++. .
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid-~ 239 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDVIFD-F 239 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceEEEE-C
Confidence 3555567664 345666666 479999999876655543 3332211111111110 122346898874 2
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| ..+.+..+.+.|+++|.++
T Consensus 240 ~g-------~~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 240 VG-------TQPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEE
Confidence 32 2347777889999999976
No 301
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=72.24 E-value=8.7 Score=40.10 Aligned_cols=72 Identities=24% Similarity=0.196 Sum_probs=51.0
Q ss_pred cCCcCChhH---HHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc------CCCCccEE
Q 039233 84 RVPDEEASS---LTTAAEETGR---KLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD------APEKADIL 151 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga---~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~------~p~k~DiI 151 (359)
+|.|--||| +..++...+. +..+|+.|+|+....+|+.|.--+|.+..+.+.++|...=. ..+++|.|
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~v 268 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFV 268 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEE
Confidence 467777887 4444444432 25799999999999999999887777645677777655422 23579999
Q ss_pred Eecc
Q 039233 152 VSEL 155 (359)
Q Consensus 152 VSEl 155 (359)
|+..
T Consensus 269 iaNP 272 (489)
T COG0286 269 IANP 272 (489)
T ss_pred EeCC
Confidence 9853
No 302
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.55 E-value=20 Score=34.06 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH-------hcCC-C--------CeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR-------LEGW-E--------KTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~-------~n~~-~--------~~V~vi~~d~~~~~~ 144 (359)
|-=+|+|. ++...+++| ..|+.+|.|++.++.+++.++ +.+. . .++++ ..|..+
T Consensus 6 I~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 6 IGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 33468876 555556666 489999999988765553332 2221 1 13432 233322
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
-+.+|+||- ..- -+-+.-.+++....+.++++.+++.....
T Consensus 80 ~~~aDlVi~-av~--e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 LKDADLVIE-AAT--ENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred hccCCeeee-ccc--ccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 257899882 111 01112246677777888888887555444
No 303
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.78 E-value=17 Score=35.22 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=48.2
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGS 158 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs 158 (359)
++|+=.|+|. +..+|+..|+ +|++++.++.-.+.|++ .|.... +... +. ..+.+|+++- .-|
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~a~~----~Ga~~v---i~~~--~~-~~~~~d~~i~-~~~- 232 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGA--TVHVMTRGAAARRLALA----LGAASA---GGAY--DT-PPEPLDAAIL-FAP- 232 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH----hCCcee---cccc--cc-CcccceEEEE-CCC-
Confidence 3566667665 3455666773 79999999876555544 343332 2111 11 1245786551 111
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.++.+..+.+.|+++|.++=
T Consensus 233 ------~~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 233 ------AGGLVPPALEALDRGGVLAV 252 (329)
T ss_pred ------cHHHHHHHHHhhCCCcEEEE
Confidence 23577888899999999754
No 304
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=70.63 E-value=4.2 Score=39.99 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=50.2
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-------ccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-------RCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-------~~~~~p~k~DiIV 152 (359)
.|+-.|+|. +..+|...|++ +|++++.++.-...+++ .+. + .++..+- .+.. ...+|+++
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G~~-~v~~~~~~~~k~~~~~~----~g~-~--~~i~~~~~~~~~~v~~~~-~~~~d~vl 259 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAGCT-TIIAVDIVDSRLELAKE----LGA-T--HVINPKEEDLVAAIREIT-GGGVDYAL 259 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCC-c--EEecCCCcCHHHHHHHHh-CCCCcEEE
Confidence 454446665 44667778877 89999999865555443 222 1 2232221 1122 45689988
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
- ..|+ +..+..+.+.|+++|.++
T Consensus 260 d-~~g~-------~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 260 D-TTGV-------PAVIEQAVDALAPRGTLA 282 (365)
T ss_pred E-CCCC-------cHHHHHHHHHhccCCEEE
Confidence 3 3332 236677788899999877
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=70.54 E-value=6.9 Score=35.60 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=48.6
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc------ccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC------WDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~------~~~p~k~DiIVS 153 (359)
+|+-.|+|+ +..+|...| .+|++++.++...+.+++. +... ++...-.+ ....+.+|+++.
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GADH---VIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCce---eccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 567777765 345666666 4899999998766555432 2211 22111111 112357999984
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..|. ...+..+.+.|+++|.++
T Consensus 208 -~~~~-------~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 208 -AVGG-------PETLAQALRLLRPGGRIV 229 (271)
T ss_pred -CCCC-------HHHHHHHHHhcccCCEEE
Confidence 2331 135666778889999866
No 306
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.47 E-value=24 Score=33.77 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-------CC-C--------CeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-------GW-E--------KTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-------~~-~--------~~V~vi~~d~~~~~~ 144 (359)
|.=+|+|+ ++...+++| .+|+.+|.+++.++.+.+.+..+ +. . .++++. .|...
T Consensus 7 I~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 80 (292)
T PRK07530 7 VGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED--- 80 (292)
T ss_pred EEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH---
Confidence 44468886 445555666 58999999998887765544322 11 0 224432 34332
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
-..+|+||- .+-. +.+...+++......++++.+++-
T Consensus 81 ~~~aD~Vie-avpe--~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 LADCDLVIE-AATE--DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred hcCCCEEEE-cCcC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 247899884 2211 112234556666778899988873
No 307
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=69.08 E-value=8.6 Score=35.64 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=57.8
Q ss_pred cCCcCC--hhH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHH------HHHhcCCCCeEEEEeCccccccCCCCccEEEec
Q 039233 84 RVPDEE--ASS-LTTAAEETGRKLKIYAVEKNPNAVVTLHS------LVRLEGWEKTVTIVSCDMRCWDAPEKADILVSE 154 (359)
Q Consensus 84 ~v~D~g--~Gt-l~~~A~~aga~~~V~AVE~n~~a~~~a~~------~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSE 154 (359)
+|.|+- .|- .-+++-..|++.+||+.--++...-..++ ..++....| ++++-++...+.+|++.|++...
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq~~d~~~~~ 129 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQKLDLVPTA 129 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCCcccccccc
Confidence 566663 343 33556667788899999776642211111 111122333 78888888887788999998753
Q ss_pred cccccCC-----CCChHHHHHHHhhccCCCeEEE
Q 039233 155 LLGSFGD-----NELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 155 llGs~~~-----~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
....-.- ..-...+...+.+.|||||+..
T Consensus 130 ~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~ 163 (238)
T COG4798 130 QNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYL 163 (238)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhcCCCcEEE
Confidence 3222111 1112334455679999999843
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=68.78 E-value=14 Score=35.94 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred ccCCcCChhHH----HHHHHHcCCCCeEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecc
Q 039233 83 DRVPDEEASSL----TTAAEETGRKLKIYAVEK---NPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gtl----~~~A~~aga~~~V~AVE~---n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEl 155 (359)
++|+=.|+|.+ ..+|+..|+ +|++++. ++.-.+.|++ .|.. .|..-..+..+......+|+++ |.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~vi-d~ 245 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLII-EA 245 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEEE-EC
Confidence 45666688762 355566664 7999987 5544444432 2321 1110011111111224689887 34
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
.| .+..+..+.+.|+++|.++--
T Consensus 246 ~g-------~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 246 TG-------VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred cC-------CHHHHHHHHHHccCCcEEEEE
Confidence 44 234677788899999987643
No 309
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=68.65 E-value=12 Score=37.56 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=58.0
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCC-CCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAP-EKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p-~k~DiIVS-EllGs~ 159 (359)
+++|+|||. .+..-+..+.. .+++++.|+.-+..+.......+..++-.++.+|.-+-..+ ..+|.+=+ |..=+.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~-~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKA-GVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccC-CccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccC
Confidence 578999997 55544444433 89999999865544444444444555544566665553222 35676553 211111
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 160 GDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
.. ...++....|-+||||..|=...
T Consensus 192 ~~---~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 192 PD---LEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred Cc---HHHHHHHHhcccCCCceEEeHHH
Confidence 11 22355666788999999775433
No 310
>PRK13699 putative methylase; Provisional
Probab=66.80 E-value=4.6 Score=37.74 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=34.5
Q ss_pred EEEEeCccccc--cC-CCCccEEEecc---ccc---cC-------CCCChHHHHHHHhhccCCCeEEE
Q 039233 132 VTIVSCDMRCW--DA-PEKADILVSEL---LGS---FG-------DNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 132 V~vi~~d~~~~--~~-p~k~DiIVSEl---lGs---~~-------~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+++++||..++ .+ .+.+|+||+.. +|. -+ ..|...+++..+.|.|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46888998886 44 36899999752 111 01 01234457788889999999875
No 311
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=66.09 E-value=18 Score=34.66 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=49.1
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc---ccccc-CCCCccEEEecc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD---MRCWD-APEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d---~~~~~-~p~k~DiIVSEl 155 (359)
+|+-.|+|. +..+|+..|.+ +|++++.++.....+++ .+... ++..+ .+++. ....+|+++. .
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G~~-~v~~~~~s~~~~~~~~~----~g~~~---vi~~~~~~~~~~~~~~~~vd~vld-~ 238 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAGAA-EIVATDLADAPLAVARA----MGADE---TVNLARDPLAAYAADKGDFDVVFE-A 238 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH----cCCCE---EEcCCchhhhhhhccCCCccEEEE-C
Confidence 455566665 34566667765 89999998876654443 23322 23222 11221 1245899985 2
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.|. ...+....+.|+++|++|
T Consensus 239 ~g~-------~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 239 SGA-------PAALASALRVVRPGGTVV 259 (339)
T ss_pred CCC-------HHHHHHHHHHHhcCCEEE
Confidence 331 235666778899999976
No 312
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.04 E-value=7.1 Score=37.88 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=49.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc-------cccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR-------CWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~-------~~~~p~k~DiIV 152 (359)
+|+=.|+|. +..+|+..|++ +|++++.+++-...+++ .|.. .++..+-. ++.....+|+++
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G~~-~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRGAG-RIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 454457765 34667777876 79999998865555443 3432 22322211 111224689888
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|. +..+..+.+.|+++|+++
T Consensus 241 d-~~g~-------~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 241 I-AGGG-------QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred E-CCCC-------HHHHHHHHHHhhcCCEEE
Confidence 3 2331 346667778899999876
No 313
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=66.00 E-value=12 Score=37.86 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=28.4
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLV 123 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~ 123 (359)
.|.|+|.|. |+ +++.+.| ..|+|||-|.-+.+.|++.-
T Consensus 156 ~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred eeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHHH
Confidence 578999987 76 4566665 79999999987766665543
No 314
>PRK10458 DNA cytosine methylase; Provisional
Probab=65.61 E-value=14 Score=38.32 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=39.3
Q ss_pred cCCcCCh--hHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 84 RVPDEEA--SSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 84 ~v~D~g~--Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
+++|+=| |-++....++|-+ .|.|+|.++.|..+-+.|... .....++.+|++++.
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~-~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQ-CVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCE-EEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 3567644 4477777888977 799999999988887765321 112456678888875
No 315
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=65.55 E-value=17 Score=34.29 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=44.4
Q ss_pred HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-ccccccCCCCChHHHHHHH
Q 039233 94 TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGSFGDNELSPECLDGA 172 (359)
Q Consensus 94 ~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs~~~~El~~e~L~~a 172 (359)
+++..++|...+|+|+|.++.....|++ .|+.+.. ..+ .+.-+.+|+||- =.++ ...++|...
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~---~~~---~~~~~~~DlvvlavP~~------~~~~~l~~~ 65 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEA---STD---IEAVEDADLVVLAVPVS------AIEDVLEEI 65 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEE---ESH---HHHGGCCSEEEE-S-HH------HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeec---cCC---HhHhcCCCEEEEcCCHH------HHHHHHHHh
Confidence 4566778877899999999986655543 4666643 121 112257899882 1122 145577777
Q ss_pred hhccCCCeEEE
Q 039233 173 QRFLKQDGISI 183 (359)
Q Consensus 173 ~r~Lkp~Gi~I 183 (359)
..+|++|+++.
T Consensus 66 ~~~~~~~~iv~ 76 (258)
T PF02153_consen 66 APYLKPGAIVT 76 (258)
T ss_dssp HCGS-TTSEEE
T ss_pred hhhcCCCcEEE
Confidence 77788877643
No 316
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.57 E-value=20 Score=34.30 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=51.8
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CC---------CCeEEEEeCcccccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GW---------EKTVTIVSCDMRCWD 143 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~---------~~~V~vi~~d~~~~~ 143 (359)
|.=+|+|+ ++..++++| .+|+.+|.+++.++.+++.+++. .. ..+|++. .|..+
T Consensus 6 IaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~-- 80 (287)
T PRK08293 6 VTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE-- 80 (287)
T ss_pred EEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH--
Confidence 44568886 455556666 58999999998888777664311 11 1234322 33332
Q ss_pred CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 144 APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 144 ~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
.-+.+|+||. .+.. +-+...+++....+.++++.++
T Consensus 81 a~~~aDlVie-avpe--~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 AVKDADLVIE-AVPE--DPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HhcCCCEEEE-eccC--CHHHHHHHHHHHHhhCCCCCEE
Confidence 1257899884 2221 1123445666667777777765
No 317
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=64.17 E-value=8.9 Score=36.85 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=48.1
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-------ccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-------RCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-------~~~~~p~k~DiIV 152 (359)
+|+-.|+|. +..+|...|.. +|++++.++.....+++ .+.. .++..+- +.......+|+++
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~-~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~i~~~~~~~~~d~vl 241 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAA-RIIAVDSNPERLDLAKE----AGAT---DIINPKNGDIVEQILELTGGRGVDCVI 241 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHH----hCCc---EEEcCCcchHHHHHHHHcCCCCCcEEE
Confidence 455456665 34556666754 89999888765555443 2322 2332221 1122225689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|. .+.+..+.+.|+++|.++
T Consensus 242 d-~~g~-------~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 242 E-AVGF-------EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred E-ccCC-------HHHHHHHHHHhhcCCEEE
Confidence 4 3331 136667778899999876
No 318
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=63.98 E-value=37 Score=30.49 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-c-cccCCCCccEEEeccccccCCCCChHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-R-CWDAPEKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-~-~~~~p~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
|+.+|.++| ..|++.+--..... |=....++.-+|- . ..-.+.++|++|+ +. ++.+.
T Consensus 22 l~~a~~~~G--~~v~~~~~~g~~~R---------GG~~~s~vRi~~~~~~~~~~~~~~D~lva--~d--------~~~~~ 80 (197)
T PRK06274 22 LANAAMNEG--FHVRTAETLGMSQR---------EGSVISHLRFGDEISSPLIPEGQADLLLA--LE--------PAEVA 80 (197)
T ss_pred HHHHHHHcC--CCeEeccccCchhh---------CCeEEEEEEEcCccCCCccCCCCCCEEEE--cC--------HHHHH
Confidence 678888988 47888887653221 2112222333331 1 1111468999996 22 33343
Q ss_pred HHhhccCCCeEEEccc
Q 039233 171 GAQRFLKQDGISIPSS 186 (359)
Q Consensus 171 ~a~r~Lkp~Gi~IP~~ 186 (359)
.....|||||++|-++
T Consensus 81 ~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 81 RNLHFLKKGGKIIVNA 96 (197)
T ss_pred HHHhhcCCCcEEEEEC
Confidence 4446799999988554
No 319
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=63.90 E-value=4.4 Score=41.46 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=44.1
Q ss_pred cCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCe-EEEEeCccccc
Q 039233 84 RVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKT-VTIVSCDMRCW 142 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~-V~vi~~d~~~~ 142 (359)
.|-|+=||. .+.-|++-| .+|||=|.||++++.++.++..|....+ |++++.|..++
T Consensus 252 vv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred hhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 344554554 333344444 4999999999999999999999988877 99999999885
No 320
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=63.89 E-value=40 Score=29.78 Aligned_cols=73 Identities=29% Similarity=0.386 Sum_probs=43.8
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccccCCCCChHHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSFGDNELSPECLDG 171 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~~~~El~~e~L~~ 171 (359)
|+.+|.+.| ..|++.+--.... + |=.....+.-+|-.-..+ .+++|++|+ |+ ++.+..
T Consensus 20 la~aa~~~G--~~v~~~~~ygs~~-------R--GG~~~~~vris~~~i~s~~~~~~D~lva--l~--------~~~~~~ 78 (170)
T PRK08338 20 LGEAAAIEG--LNVLQTQDYSSAS-------R--GGHSIADVIISKEPIYDVMVTKADVLVA--LH--------QLGYET 78 (170)
T ss_pred HHHHHHHcC--CCEEEccccChhh-------c--CCeEEEEEEEcCccccCCCCCCCCEEEE--cC--------HHHHHH
Confidence 668888888 4888888765221 1 222223333343212222 468999996 32 345555
Q ss_pred HhhccCCCeEEEccc
Q 039233 172 AQRFLKQDGISIPSS 186 (359)
Q Consensus 172 a~r~Lkp~Gi~IP~~ 186 (359)
....|+|||++|-+.
T Consensus 79 ~~~~l~~~g~vi~n~ 93 (170)
T PRK08338 79 AKSSLKEDGLLIIDT 93 (170)
T ss_pred HhcccCCCeEEEEeC
Confidence 567799999998654
No 321
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=63.52 E-value=19 Score=36.93 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=50.8
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=+|+|. +++.|+..|+ +|+++|.++.-...|++ .|. .+ + ++.+. -..+|+||. ..|
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~----~G~--~~--~--~~~e~--v~~aDVVI~-atG-- 266 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM----EGY--EV--M--TMEEA--VKEGDIFVT-TTG-- 266 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh----cCC--EE--c--cHHHH--HcCCCEEEE-CCC--
Confidence 567778876 4566666775 78889999865444433 333 12 1 12221 146899984 333
Q ss_pred CCCCChHHHHHHH-hhccCCCeEEEccc
Q 039233 160 GDNELSPECLDGA-QRFLKQDGISIPSS 186 (359)
Q Consensus 160 ~~~El~~e~L~~a-~r~Lkp~Gi~IP~~ 186 (359)
.+.++..+ .+.+|+||+++=-+
T Consensus 267 -----~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 267 -----NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -----CHHHHHHHHHhcCCCCcEEEEeC
Confidence 35577766 78899999986544
No 322
>PLN02827 Alcohol dehydrogenase-like
Probab=62.76 E-value=18 Score=35.89 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-----cc----ccccCCCCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-----DM----RCWDAPEKAD 149 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-----d~----~~~~~p~k~D 149 (359)
+.|+-.|+|. +..+|...|++ +|++++.++.-.+.|++ .|... ++.. +. .++. ...+|
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~-~vi~~~~~~~~~~~a~~----lGa~~---~i~~~~~~~~~~~~v~~~~-~~g~d 265 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGAS-QIIGVDINPEKAEKAKT----FGVTD---FINPNDLSEPIQQVIKRMT-GGGAD 265 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCHHHHHHHHH----cCCcE---EEcccccchHHHHHHHHHh-CCCCC
Confidence 4566668876 33556667866 79999988865555533 34322 2221 11 1111 22689
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCC-eEEE
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQD-GISI 183 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~I 183 (359)
+++ |..|. +..+..+.+.|+++ |+++
T Consensus 266 ~vi-d~~G~-------~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 266 YSF-ECVGD-------TGIATTALQSCSDGWGLTV 292 (378)
T ss_pred EEE-ECCCC-------hHHHHHHHHhhccCCCEEE
Confidence 888 45552 34667777889998 9875
No 323
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=62.69 E-value=25 Score=32.03 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=44.3
Q ss_pred hhc-ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEE
Q 039233 80 ALV-DRVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 80 ~~~-d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi 135 (359)
.++ .+|+=+|+|. ++...+++|.+ +++.+|.+. .=++.+.+++++.+-.-+|+.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 344 3688889875 55666788987 999999761 1123344444432223456666
Q ss_pred eCcccccc---CCCCccEEEe
Q 039233 136 SCDMRCWD---APEKADILVS 153 (359)
Q Consensus 136 ~~d~~~~~---~p~k~DiIVS 153 (359)
..++.+-. .-..+|+||.
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~ 117 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLD 117 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEE
Confidence 66654322 2257999986
No 324
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=62.47 E-value=9.6 Score=36.97 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=48.4
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc----cccccCCCCccEEEecc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD----MRCWDAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d----~~~~~~p~k~DiIVSEl 155 (359)
+|+=.|+|. +..+|+..|++ +|+++..++.-.+.+++ .|....+..-..+ +.+......+|+++- .
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G~~-~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid-~ 248 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAGAS-KIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD-C 248 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCCEEEE-C
Confidence 444446555 34666777865 89999988876655543 2332111111111 111112234899983 3
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| .+..+..+.+.|+++|.++
T Consensus 249 ~g-------~~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 249 AG-------VQATLDTAIDALRPRGTAV 269 (351)
T ss_pred CC-------CHHHHHHHHHhccCCCEEE
Confidence 33 2346777788899999865
No 325
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=62.41 E-value=16 Score=35.04 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------cCC-C--------CeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------EGW-E--------KTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n~~-~--------~~V~vi~~d~~~~~~ 144 (359)
|-=+|+|. ++...+++| ..|+++|.+++.++.+++.+++ .+. . .+++ +..+...
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--- 80 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE--- 80 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH---
Confidence 34468876 444445566 5899999999887766554431 111 0 1122 2233322
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-+.+|+||- .+- .+.+....++......++++.+++
T Consensus 81 ~~~aD~Vie-av~--e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 LRDADFIIE-AIV--ESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred hCCCCEEEE-cCc--cCHHHHHHHHHHHHhhCCCCcEEE
Confidence 257899983 221 112223345555566788888776
No 326
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=62.16 E-value=26 Score=33.35 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=50.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-----cCCCCccEEEe
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-----DAPEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-----~~p~k~DiIVS 153 (359)
++++-.|+|. +...|+..|.+ +|++++.+++....+++ .+.. .++..+-.+. .....+|+++.
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGAS-RVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 3555557665 34556666755 59999999876655543 2332 3343332221 12357999994
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..| ..+.+..+.+.|+++|.++
T Consensus 233 -~~~-------~~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 233 -ATG-------VPKTLEQAIEYARRGGTVL 254 (334)
T ss_pred -CCC-------ChHHHHHHHHHHhcCCEEE
Confidence 333 1346667778899999875
No 327
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=62.03 E-value=5.8 Score=34.88 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=18.4
Q ss_pred eeeeecCCeEEecCCCeEEEEEEeee
Q 039233 303 AIFFPLRTPVCIRPGSPLEVHFWRCC 328 (359)
Q Consensus 303 q~~fpl~~Pi~V~~G~~i~~~~~R~~ 328 (359)
|.+++|++|+.|++||.|..+..=.+
T Consensus 78 Q~~y~l~~~v~i~~GD~l~~~C~Ydn 103 (156)
T PF03712_consen 78 QEFYPLKEPVTIPPGDTLRTECTYDN 103 (156)
T ss_dssp -S-EEEEEEEEE-TT-EEEEEEEEE-
T ss_pred ceeEECCCceEecCCCEEEEEEEEeC
Confidence 77899999999999999998766454
No 328
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=61.59 E-value=24 Score=34.78 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe--Cc----cccccCCCCccEEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS--CD----MRCWDAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~--~d----~~~~~~p~k~DiIV 152 (359)
++|+=.|+|. ...+|+..|++ +|++++.++.-.+.|++ .|....+..-. .+ ++++.. ..+|+++
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~-~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~-~g~d~vi 260 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKAS-RIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITD-GGVDYSF 260 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhC-CCCCEEE
Confidence 4565568776 23556667865 89999999876666544 23322121110 01 111211 2689888
Q ss_pred eccccccCCCCChHHHHHHHhhccCCC-eEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQD-GISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~I 183 (359)
|..|. +..+..+.+.|+++ |.++
T Consensus 261 -d~~G~-------~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 261 -ECIGN-------VNVMRAALECCHKGWGESI 284 (368)
T ss_pred -ECCCC-------HHHHHHHHHHhhcCCCeEE
Confidence 34442 44667777788885 8744
No 329
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=60.73 E-value=12 Score=36.20 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=50.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc------cCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW------DAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~------~~p~k~DiIVS 153 (359)
.|+-.|+|. +..+|...|++ +|++++.++.-...+++ .|. + .++..+..++ ..++.+|+++.
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALGPA-NIIVVDIDEAKLEAAKA----AGA-D--VVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----hCC-c--EEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 455557776 44667778876 89999988765544432 233 1 3343322111 01236899983
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..|+ ...+..+.+.|+++|.+|
T Consensus 250 -~~g~-------~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 250 -FVNN-------SATASLAFDILAKGGKLV 271 (350)
T ss_pred -CCCC-------HHHHHHHHHHhhcCCeEE
Confidence 4442 336777788899999876
No 330
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=58.83 E-value=21 Score=31.28 Aligned_cols=74 Identities=28% Similarity=0.349 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-cCC-CCccEEEeccccccCCCCChHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-DAP-EKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~~p-~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
|+.+|.+.| ..|.+.+.-.... + |=.....+.-+|-... ..+ .++|++|+ | .++.+.
T Consensus 12 la~a~~~~G--~~v~~~~~ygs~~--------r-GG~~~~~vris~~~~~~~~~~~~~Dilv~--l--------~~~~~~ 70 (173)
T PF01558_consen 12 LARAAAREG--YYVQSTPEYGSEI--------R-GGPVVSHVRISDEPIIPSPPVGEADILVA--L--------DPEALE 70 (173)
T ss_dssp HHHHHHHTT--SEEEEEEEEESSS--------S-SSCEEEEEEEESS--SSSS-TSSESEEEE--S--------SHHHHH
T ss_pred HHHHHHHcC--CCEEEEeCCChhh--------c-CCeEEEEEEEecCcCccCcccCCCCEEEE--c--------CHHHHH
Confidence 678888888 5888888654211 1 2223355555553132 233 79999996 2 355666
Q ss_pred HHhhccCCCeEEEcccc
Q 039233 171 GAQRFLKQDGISIPSSY 187 (359)
Q Consensus 171 ~a~r~Lkp~Gi~IP~~~ 187 (359)
...+.|||||++|=.+.
T Consensus 71 ~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 71 RHLKGLKPGGVVIINSS 87 (173)
T ss_dssp HCGTTCETTEEEEEETT
T ss_pred HHhcCcCcCeEEEEECC
Confidence 55678999999876653
No 331
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=58.67 E-value=7 Score=33.19 Aligned_cols=51 Identities=25% Similarity=0.239 Sum_probs=35.3
Q ss_pred eEEEEeCccccc--cCCCCccEEEeccccccCC---CC-ChHHHHHHHhhccCCCeEEEc
Q 039233 131 TVTIVSCDMRCW--DAPEKADILVSELLGSFGD---NE-LSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 131 ~V~vi~~d~~~~--~~p~k~DiIVSEllGs~~~---~E-l~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+++++.||+++. .+..++|+|. ++.|.. -| -.++++....+.++|||++.=
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~y---lDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWY---LDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEE---E-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEE---ecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 578899999884 3557999998 666652 22 357899999999999998653
No 332
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=58.55 E-value=8.6 Score=36.56 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCcCChhH--H-HHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCeEEEEeCcccc-c-----cCCCCccEEEe
Q 039233 85 VPDEEASS--L-TTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLE-GWEKTVTIVSCDMRC-W-----DAPEKADILVS 153 (359)
Q Consensus 85 v~D~g~Gt--l-~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n-~~~~~V~vi~~d~~~-~-----~~p~k~DiIVS 153 (359)
.||+|+|. + -.... ..| .+-++-|.++.++..|+.++..| +++..|++..+.=.+ + -..|.+|...+
T Consensus 82 ~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 82 ILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred EEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 58999995 1 12222 233 57888999999999999999998 899989987665433 2 12367888876
Q ss_pred c
Q 039233 154 E 154 (359)
Q Consensus 154 E 154 (359)
+
T Consensus 160 N 160 (292)
T COG3129 160 N 160 (292)
T ss_pred C
Confidence 4
No 333
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=58.52 E-value=14 Score=36.06 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=40.7
Q ss_pred ChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc----CCCCeEEEEeCcccccc------CCCCccEEEe
Q 039233 89 EASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE----GWEKTVTIVSCDMRCWD------APEKADILVS 153 (359)
Q Consensus 89 g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n----~~~~~V~vi~~d~~~~~------~p~k~DiIVS 153 (359)
|+|+ |..-..+.+++ +|+.+|.|++.....++.++.. ++...+..+-+|+++-+ -..++|+|+.
T Consensus 6 a~GSIGseL~rql~~~~p~-~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPK-KLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-S-EEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred cccHHHHHHHHHHHhcCCC-eEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 5676 55555566777 9999999999888888877532 23334567799999853 1248999995
No 334
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=58.25 E-value=16 Score=35.14 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=48.3
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc------cccccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD------MRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d------~~~~~~p~k~DiIVS 153 (359)
.|+-.|+|. +...|+..|.+ +|+++..++...+.+++ .+. -.++..+ +........+|+++.
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G~~-~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILGAK-RVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEEEE
Confidence 455557665 34556677755 59999988765555432 233 1233222 111222235999985
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
..| ....+..+.+.|+++|.++=
T Consensus 234 -~~g-------~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 234 -AAG-------SPATIEQALALARPGGKVVL 256 (343)
T ss_pred -CCC-------CHHHHHHHHHHhhcCCEEEE
Confidence 222 13356677788999998763
No 335
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=58.11 E-value=12 Score=35.86 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=47.8
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc----cccccCCCCccEEEecc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD----MRCWDAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d----~~~~~~p~k~DiIVSEl 155 (359)
.|+-.|+|. +..+|...| .+|+++..+++-...+++ .+..+.+.....+ +........+|+++. .
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld-~ 234 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGADVVID-A 234 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCCEEEE-C
Confidence 455556654 345566666 479999888766555533 2322212111111 111222345899985 2
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| ..+.+..+.+.|+++|.+|
T Consensus 235 ~g-------~~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 235 TG-------NPASMEEAVELVAHGGRVV 255 (337)
T ss_pred CC-------CHHHHHHHHHHHhcCCEEE
Confidence 32 1345667778889999876
No 336
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.08 E-value=34 Score=33.27 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=49.2
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc-------cccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD-------MRCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d-------~~~~~~p~k~DiIV 152 (359)
.|+=.|+|. +..+|...|++ +|++++.++.-...++ ..|....+..-..+ +.++.....+|+++
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G~~-~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAGAR-RVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 344446665 34566777865 8999998876544443 23432211111111 11222234689988
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|. ...+..+.+.|+++|.++
T Consensus 255 d-~~g~-------~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 255 E-ASGH-------PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred E-CCCC-------hHHHHHHHHHhccCCEEE
Confidence 4 3432 235667778999999876
No 337
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=58.00 E-value=2 Score=40.02 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=48.7
Q ss_pred cCCcCChhH--HH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe-cccccc
Q 039233 84 RVPDEEASS--LT-TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS-ELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt--l~-~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS-EllGs~ 159 (359)
+++|+|+|- ++ .+|-... .|||-|.|..|...++++ ++ +.++.+..-- ..-|+|+|.+ ++++-.
T Consensus 115 ~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~y-nVl~~~ew~~----t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 115 TLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----NY-NVLTEIEWLQ----TDVKLDLILCLNLLDRC 182 (288)
T ss_pred eEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----CC-ceeeehhhhh----cCceeehHHHHHHHHhh
Confidence 578999885 33 3333332 799999999887776653 23 2244443322 2247888875 333321
Q ss_pred CCCCChHHHHHHHhhccCC-CeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQ-DGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp-~Gi~I 183 (359)
-+ ....|......|+| +|..|
T Consensus 183 ~~---p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 183 FD---PFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred cC---hHHHHHHHHHHhccCCCcEE
Confidence 11 23456667777777 67644
No 338
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=57.71 E-value=13 Score=35.68 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiIV 152 (359)
.|+=.|+|. +...|.+.|++ .|+++..++.-...+++ .+. + .++..+-.+ ......+|+++
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g~~-~v~~~~~s~~~~~~~~~----~g~-~--~~~~~~~~~~~~~i~~~~~~~~vd~vl 239 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASGAR-KVIVSDLNEFRLEFAKK----LGA-D--YTIDAAEEDLVEKVRELTDGRGADVVI 239 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH----hCC-c--EEecCCccCHHHHHHHHhCCcCCCEEE
Confidence 343336654 34566777755 59999988865555532 233 1 233332222 22234589998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..| ..+.+..+.+.|+++|.++
T Consensus 240 d-~~~-------~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 240 V-ATG-------SPEAQAQALELVRKGGRIL 262 (343)
T ss_pred E-CCC-------ChHHHHHHHHHhhcCCEEE
Confidence 4 222 1235666677889999875
No 339
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.24 E-value=17 Score=35.06 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=48.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc-------cccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD-------MRCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d-------~~~~~~p~k~DiIV 152 (359)
+++-.|+|. +..+|...|++ +|+++..++.-...+++. +....+..-..+ +.+....+++|+|+
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G~~-~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFGAT-KVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 444356665 34666777865 599999887655555432 332211111111 12222234699998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|+ ...+..+.+.|+++|.++
T Consensus 240 d-~~g~-------~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 240 E-CTGA-------ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred E-CCCC-------HHHHHHHHHHhhcCCEEE
Confidence 5 3332 225666778899999876
No 340
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=57.15 E-value=32 Score=31.69 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHhhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCC-------------------HHHHHHHHHHHHhcCCCCe
Q 039233 76 AIGNALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKN-------------------PNAVVTLHSLVRLEGWEKT 131 (359)
Q Consensus 76 AI~~~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n-------------------~~a~~~a~~~~~~n~~~~~ 131 (359)
...+.++. +|+=+|+|. ++...+++|.. +++.+|.+ +.+ +.+++++++-+-.-+
T Consensus 21 ~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka-~~a~~~l~~lnp~v~ 98 (212)
T PRK08644 21 KLLEKLKKAKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKV-EALKENLLEINPFVE 98 (212)
T ss_pred HHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHH-HHHHHHHHHHCCCCE
Confidence 33344443 577888874 66667788987 89999987 333 344555544334456
Q ss_pred EEEEeCcccccc---CCCCccEEEe
Q 039233 132 VTIVSCDMRCWD---APEKADILVS 153 (359)
Q Consensus 132 V~vi~~d~~~~~---~p~k~DiIVS 153 (359)
|+.+...+.+-. .-..+|+||.
T Consensus 99 v~~~~~~i~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 99 IEAHNEKIDEDNIEELFKDCDIVVE 123 (212)
T ss_pred EEEEeeecCHHHHHHHHcCCCEEEE
Confidence 777776665422 2257899995
No 341
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=57.10 E-value=12 Score=37.91 Aligned_cols=59 Identities=17% Similarity=0.049 Sum_probs=43.7
Q ss_pred CCCCeEEEEeCccccc---cCCCCccEEE-eccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 127 GWEKTVTIVSCDMRCW---DAPEKADILV-SELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 127 ~~~~~V~vi~~d~~~~---~~p~k~DiIV-SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
+. ++|+++++++.++ ..++.+|..| |..|+.+.+ +...+.+....+.++|||+++=.++
T Consensus 273 ~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~-~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP-EQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH-HHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 45 8899999999996 2478899866 555555544 4456677888899999999765444
No 342
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=57.10 E-value=28 Score=38.09 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=61.6
Q ss_pred cCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CC--------CCeEEEEeCccccccCCC
Q 039233 87 DEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GW--------EKTVTIVSCDMRCWDAPE 146 (359)
Q Consensus 87 D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~--------~~~V~vi~~d~~~~~~p~ 146 (359)
=+|+|+ ++..++.+| ..|+.+|.|+++++.+++.++.+ .+ -.+|+.- .|... -.
T Consensus 318 ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~---~~ 391 (714)
T TIGR02437 318 VLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG---FD 391 (714)
T ss_pred EECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---hc
Confidence 457776 666677777 69999999999988877666431 01 1234332 12211 25
Q ss_pred CccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeecc
Q 039233 147 KADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVT 195 (359)
Q Consensus 147 k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~ 195 (359)
.+|+|| |.+ +-+-+.-.+++....+.++|+.++-=+..++-+.-+.
T Consensus 392 ~aDlVi-Eav--~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia 437 (714)
T TIGR02437 392 NVDIVV-EAV--VENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437 (714)
T ss_pred CCCEEE-EcC--cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 789988 322 1222344567778889999998876555554444443
No 343
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=56.90 E-value=29 Score=34.39 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=47.3
Q ss_pred HHhhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH----------------------HHHHHHHHHHHhcCCCC
Q 039233 78 GNALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKNP----------------------NAVVTLHSLVRLEGWEK 130 (359)
Q Consensus 78 ~~~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~----------------------~a~~~a~~~~~~n~~~~ 130 (359)
.+.++. +|+=+|+|. ++...+++|.. +++.||.+. .+ +.|++.+++-+-.-
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka-~aa~~~l~~inp~v 96 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA-IAAKEHLRKINSEV 96 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHH-HHHHHHHHHHCCCc
Confidence 344443 588889975 56666789977 999998863 22 34445554433445
Q ss_pred eEEEEeCccccc---cCCCCccEEEe
Q 039233 131 TVTIVSCDMRCW---DAPEKADILVS 153 (359)
Q Consensus 131 ~V~vi~~d~~~~---~~p~k~DiIVS 153 (359)
+|+.+..+...- ++-+.+|+||.
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEE
Confidence 677787776432 23367999985
No 344
>PRK11524 putative methyltransferase; Provisional
Probab=56.64 E-value=12 Score=35.86 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=34.9
Q ss_pred EEEEeCccccc--cC-CCCccEEEecc-cc--c-cCC-C---------CChHHHHHHHhhccCCCeEEE
Q 039233 132 VTIVSCDMRCW--DA-PEKADILVSEL-LG--S-FGD-N---------ELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 132 V~vi~~d~~~~--~~-p~k~DiIVSEl-lG--s-~~~-~---------El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+++++|+.++ .+ .+.+|+||+.. .+ . +.. + +.+.+.|..+.+.|||||.++
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 57899999985 23 46899999863 11 1 110 0 112457788899999999865
No 345
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=56.54 E-value=23 Score=37.11 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-------C-C--------CCeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-------G-W--------EKTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-------~-~--------~~~V~vi~~d~~~~~~ 144 (359)
|-=+|+|+ ++..++++| ..|+.+|.++++++.++++++++ | + -.+|+.. .|..++
T Consensus 8 V~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~l-- 82 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHAL-- 82 (503)
T ss_pred EEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHHh--
Confidence 44568887 666677777 58999999999988776554321 1 1 0234433 344333
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccc
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYT 188 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t 188 (359)
..+|+||.=+.. +.+.-.+++....+.++++.++.=+..+
T Consensus 83 -~~aDlVIEav~E---~~~vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 83 -ADAGLVIEAIVE---NLEVKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred -CCCCEEEEcCcC---cHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 378999842211 1122334555566777887765433333
No 346
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=56.23 E-value=5.9 Score=39.64 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=48.0
Q ss_pred ccCCc--CChhHHHHHHHHcCCCCeEEEEeCCHHHHHH-------HHHHHHhcCCCC-eEEEEeCcccc--ccCCCCccE
Q 039233 83 DRVPD--EEASSLTTAAEETGRKLKIYAVEKNPNAVVT-------LHSLVRLEGWEK-TVTIVSCDMRC--WDAPEKADI 150 (359)
Q Consensus 83 d~v~D--~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~-------a~~~~~~n~~~~-~V~vi~~d~~~--~~~p~k~Di 150 (359)
|.|.| +|||++...|++.| +.|++-|++-.++.. .+.|++.-|... =+.++.+|... |.-..++|.
T Consensus 210 divyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred CEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 45666 68999888899999 489999999877652 223333323222 26677888776 233468999
Q ss_pred EEecc
Q 039233 151 LVSEL 155 (359)
Q Consensus 151 IVSEl 155 (359)
||+..
T Consensus 288 IvcDP 292 (421)
T KOG2671|consen 288 IVCDP 292 (421)
T ss_pred EEeCC
Confidence 99853
No 347
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=55.91 E-value=42 Score=32.91 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=49.6
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc------cccccCCCCccEEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD------MRCWDAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d------~~~~~~p~k~DiIV 152 (359)
++|+=.|+|. +..+|+..|++ +|++++.++.-.+.|++ .|....+..-..+ +.+... ..+|+++
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~-~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~vi 259 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGAS-RIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG-GGVDYSF 259 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC-CCCCEEE
Confidence 3555557776 34566777866 89999998865555543 2332211111100 111222 4689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCC-eEEEc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQD-GISIP 184 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~IP 184 (359)
- ..|. ...+..+.+.|+++ |.++-
T Consensus 260 d-~~g~-------~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 260 E-CTGN-------ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred E-CCCC-------hHHHHHHHHhcccCCCEEEE
Confidence 3 4442 34667777888875 87653
No 348
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.47 E-value=24 Score=34.04 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=47.0
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc------cccccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD------MRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d------~~~~~~p~k~DiIVS 153 (359)
.|+-.|+|. +..+|...|.+ +|+++..++.-...+++ .+... ++..+ +.+....+.+|+++.
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G~~-~v~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAGAS-LVIASDPNPYRLELAKK----MGADV---VINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH----hCcce---eeCcccccHHHHHHHcCCCCCCEEEE
Confidence 444456665 34666777754 78888777654444333 33322 22221 122233357899985
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..| ..+.+..+.+.|+++|.++
T Consensus 238 -~~g-------~~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 238 -MSG-------NPKAIEQGLKALTPGGRVS 259 (341)
T ss_pred -CCC-------CHHHHHHHHHHhccCCEEE
Confidence 233 2335556677889999865
No 349
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=54.10 E-value=34 Score=32.31 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHh--hcccCCcC--ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q 039233 69 KYIQYQRAIGNA--LVDRVPDE--EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL 125 (359)
Q Consensus 69 ry~~Y~~AI~~~--~~d~v~D~--g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~ 125 (359)
..+.+++.|... ..|+|+|. |.||...+|.++| + +.+++|.++.-+..+.+++..
T Consensus 208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r-~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-R-RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-C-ceEEEecCHHHHHHHHHHHHh
Confidence 455666666652 23688887 6677888899998 3 789999999999999998875
No 350
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=53.86 E-value=74 Score=30.26 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=72.3
Q ss_pred cccHHHHHHHHHHhhcc---cCCcCChhHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCccc
Q 039233 67 SVKYIQYQRAIGNALVD---RVPDEEASSLTTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLEG--WEKTVTIVSCDMR 140 (359)
Q Consensus 67 ~vry~~Y~~AI~~~~~d---~v~D~g~Gtl~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n~--~~~~V~vi~~d~~ 140 (359)
.+|+..+.++|.+++.+ .|+.+|||.=+.+-. ..+.++++|=||.-+ .++.-++.+.+.+ -..+.+.|..|++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 46777788888887753 588999995222111 112235677666644 4545455555443 3467999999997
Q ss_pred c-cc--------CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 141 C-WD--------APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 141 ~-~~--------~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+ |. -+.+.=++|+|-+-..+..+....+|....+...||+.++
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~ 194 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA 194 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 3 21 1234557888877666766666667777766666776544
No 351
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=53.70 E-value=48 Score=32.55 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=49.5
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-Ccc--------ccccCCCCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-CDM--------RCWDAPEKAD 149 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~d~--------~~~~~p~k~D 149 (359)
+.|+=.|+|. ...+|...|++ +|++++.++.-.+.|++ -|... ++. .+. .++. ...+|
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~-~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~~~v~~~~-~~g~d 258 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGAS-RIIGIDINPDKFELAKK----FGATD---CVNPKDHDKPIQQVLVEMT-DGGVD 258 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCCCE---EEcccccchHHHHHHHHHh-CCCCc
Confidence 4555557776 34566677865 89999999875555433 23322 222 111 1111 23689
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCC-eEEE
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQD-GISI 183 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~I 183 (359)
+|+ |..|. +..+..+.+.|+++ |.++
T Consensus 259 ~vi-d~~g~-------~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 259 YTF-ECIGN-------VKVMRAALEACHKGWGTSV 285 (368)
T ss_pred EEE-ECCCC-------hHHHHHHHHhhccCCCeEE
Confidence 998 34552 34677777889886 8765
No 352
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=53.37 E-value=82 Score=28.21 Aligned_cols=72 Identities=26% Similarity=0.176 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc---CCCCccEEEeccccccCCCCChHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD---APEKADILVSELLGSFGDNELSPECL 169 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~---~p~k~DiIVSEllGs~~~~El~~e~L 169 (359)
|+.+|.+.| ..|++.+.-.... + |=....++.-++ +.+. ....+|++|+ + .++.+
T Consensus 21 La~a~~~~G--~~v~~~~~ygs~~-------R--GG~~~~~vRis~-~~i~~~~~~~~~Dilva--~--------~~~~~ 78 (185)
T PRK14029 21 LAEAAFLEG--KYVQAFPFFGVER-------R--GAPVTAFTRIDE-KPIRIKTQIYEPDVVVV--L--------DPSLL 78 (185)
T ss_pred HHHHHHhcC--CeEEEeeccChhh-------c--CCcEEEEEEEcC-CcccCccccCCCCEEEE--c--------CHHHh
Confidence 667788887 5888888754211 1 222223444444 2332 4578999996 2 34556
Q ss_pred HHH--hhccCCCeEEEccc
Q 039233 170 DGA--QRFLKQDGISIPSS 186 (359)
Q Consensus 170 ~~a--~r~Lkp~Gi~IP~~ 186 (359)
+.. ...|+|||++|-++
T Consensus 79 ~~~~~~~~l~~~g~vi~n~ 97 (185)
T PRK14029 79 DTVDVTAGLKDGGIVIVNT 97 (185)
T ss_pred hhchHhhCcCCCcEEEEEC
Confidence 543 56799999999664
No 353
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=53.09 E-value=71 Score=32.09 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=44.4
Q ss_pred HHhhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCC--------------------HHHHHHHHHHHHhcCCCCeE
Q 039233 78 GNALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKN--------------------PNAVVTLHSLVRLEGWEKTV 132 (359)
Q Consensus 78 ~~~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n--------------------~~a~~~a~~~~~~n~~~~~V 132 (359)
.+.+++ +|+=+|+|- ++...+++|.+ +++.+|-+ +.+ +.|++.+++-+-.-+|
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg-~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka-~~~~~~l~~~np~v~i 113 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVG-TITLIDDDTVDVSNIHRQILFGASDVGRPKV-EVAAERLKEIQPDIRV 113 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEeCCEEccccccccccCChhHCCCHHH-HHHHHHHHHHCCCCee
Confidence 334443 688889875 55666788987 99999865 222 3344444332223357
Q ss_pred EEEeCcccccc---CCCCccEEEe
Q 039233 133 TIVSCDMRCWD---APEKADILVS 153 (359)
Q Consensus 133 ~vi~~d~~~~~---~p~k~DiIVS 153 (359)
+.+...+.+-. +-+.+|+||.
T Consensus 114 ~~~~~~i~~~~~~~~~~~~DlVid 137 (370)
T PRK05600 114 NALRERLTAENAVELLNGVDLVLD 137 (370)
T ss_pred EEeeeecCHHHHHHHHhCCCEEEE
Confidence 77776665321 2257999984
No 354
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=53.09 E-value=31 Score=36.22 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--------CCeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------EG-W--------EKTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n~-~--------~~~V~vi~~d~~~~~~ 144 (359)
|-=+|+|+ ++..++++| ..|+.+|.++++++.+.+.+++ .| + -++|+.. .+..++
T Consensus 10 V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~~-- 84 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALADL-- 84 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh--
Confidence 44568887 555566777 6899999999998887665542 11 0 1235544 344433
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..+|+||. .+- -+.+.-..++....+.++++.++.
T Consensus 85 -~~aDlViE-av~--E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 85 -ADCDLVVE-AIV--ERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred -CCCCEEEE-cCc--ccHHHHHHHHHHHHhhCCCCcEEE
Confidence 37899984 221 112222334555667777877764
No 355
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=52.61 E-value=27 Score=35.48 Aligned_cols=46 Identities=15% Similarity=0.386 Sum_probs=38.5
Q ss_pred eEEEEeC----CHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe
Q 039233 105 KIYAVEK----NPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS 153 (359)
Q Consensus 105 ~V~AVE~----n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS 153 (359)
-++|||. |.+-+..+|+++++.|++| |+|.+.-+.+ +|..+|+||.
T Consensus 381 iifaCDAGMGSSAMGAsilrkk~k~agl~~-I~V~n~AIn~--Lp~d~d~VIT 430 (472)
T COG2213 381 IIFACDAGMGSSAMGASILRKKLKNAGLND-ISVTNYAINN--LPADADLVIT 430 (472)
T ss_pred EEEEEcCCCChhhhhHHHHHHHHHhCCCCc-eeEeehhhhc--CCccccEEEE
Confidence 4789997 6666778999999999988 9999998876 4677999995
No 356
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=52.59 E-value=19 Score=34.40 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc------cccccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD------MRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d------~~~~~~p~k~DiIVS 153 (359)
.|+=.|+|. +..+|...|+ .+|+++..+++-...++ ..+. + .++..+ ++++.....+|+++.
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~----~~g~-~--~~~~~~~~~~~~i~~~~~~~~~dvvld 241 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAE----RLGA-D--HVLNASDDVVEEVRELTGGRGADAVID 241 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHH----HhCC-c--EEEcCCccHHHHHHHHhCCCCCCEEEE
Confidence 454456554 3455666664 38999998886544443 3343 2 222222 222222246899984
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..| ..+.+..+.+.|+++|.++
T Consensus 242 -~~g-------~~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 242 -FVG-------SDETLALAAKLLAKGGRYV 263 (340)
T ss_pred -cCC-------CHHHHHHHHHHhhcCCEEE
Confidence 333 1346677778899999876
No 357
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=52.57 E-value=31 Score=33.77 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=52.8
Q ss_pred HHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc---cCCCCccEEEeccccccCCCCChHHHHH
Q 039233 95 TAAEETG-RKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW---DAPEKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 95 ~~A~~ag-a~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~---~~p~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
.+++-.| ++ +|-.||+++-.+....+..++-|+++ |+.+.-|+|.- ++.+|+|+++.. -||.++
T Consensus 167 ia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfiTD----------PpeTi~ 234 (354)
T COG1568 167 IALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFITD----------PPETIK 234 (354)
T ss_pred HHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeeecC----------chhhHH
Confidence 4444444 45 99999999999988888888777766 99999999884 233699999963 466777
Q ss_pred HHhhccC
Q 039233 171 GAQRFLK 177 (359)
Q Consensus 171 ~a~r~Lk 177 (359)
+...||.
T Consensus 235 alk~Flg 241 (354)
T COG1568 235 ALKLFLG 241 (354)
T ss_pred HHHHHHh
Confidence 6665553
No 358
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=52.40 E-value=22 Score=34.93 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=49.7
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC--c----cccccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC--D----MRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~--d----~~~~~~p~k~DiIVS 153 (359)
+|+=.|+|. +..+|...|++ .|++++.++.-.+.+++ .|....|..-.. + ++++. ++.+|+++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-~~~~d~vi- 258 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAGAS-RIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-DGGVDYAF- 258 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-CCCCcEEE-
Confidence 444447765 34567777866 79999988765555533 233221111111 1 11222 35789998
Q ss_pred ccccccCCCCChHHHHHHHhhccC-CCeEEEc
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLK-QDGISIP 184 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lk-p~Gi~IP 184 (359)
|..|. ...+..+.+.|+ ++|+++-
T Consensus 259 d~~g~-------~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 259 EVIGS-------ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred ECCCC-------HHHHHHHHHHhccCCCEEEE
Confidence 34442 346667778888 9999873
No 359
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=52.11 E-value=75 Score=28.17 Aligned_cols=73 Identities=26% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc--ccCCCCccEEEeccccccCCCCChHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC--WDAPEKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~--~~~p~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
|+.++.++| ..|++.+.=+... + |=....+|.-+|=.- ..+.+.+|++|+ + .++.++
T Consensus 21 la~a~~~~G--~~v~~~~~ygs~~-------r--Gg~~~~~vris~~~i~~~s~~~~~D~lva--~--------~~~~~~ 79 (177)
T TIGR02175 21 LAEAAFLEG--KYAQAFPEFGAER-------R--GAPVRAFLRISDRPIRVHSQIYEPDYVVV--L--------DPTLLK 79 (177)
T ss_pred HHHHHHhcC--ceEEEeeccCchh-------c--CCcEEEEEEEcCccccCCCccCCCCEEEE--c--------CHHHhC
Confidence 667888887 5788888654211 1 222223333343211 223468999996 2 244454
Q ss_pred H--HhhccCCCeEEEccc
Q 039233 171 G--AQRFLKQDGISIPSS 186 (359)
Q Consensus 171 ~--a~r~Lkp~Gi~IP~~ 186 (359)
. ..+.|+|||++|-++
T Consensus 80 ~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 80 TVNVTAGLKEDGILIVNT 97 (177)
T ss_pred ccchhhCcCCCeEEEEEC
Confidence 3 346799999998664
No 360
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=51.94 E-value=51 Score=33.06 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=49.4
Q ss_pred ccCCcCC-hhHH----HHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCeEEEEeC----cc----ccccCC
Q 039233 83 DRVPDEE-ASSL----TTAAEET--GRKLKIYAVEKNPNAVVTLHSLVRLEGW--EKTVTIVSC----DM----RCWDAP 145 (359)
Q Consensus 83 d~v~D~g-~Gtl----~~~A~~a--ga~~~V~AVE~n~~a~~~a~~~~~~n~~--~~~V~vi~~----d~----~~~~~p 145 (359)
++|+=+| +|.+ ..+|... |+. +|++++.++.-.+.|++....... +-...++.. +. +++...
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~-~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g 255 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPS-LLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG 255 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCc-eEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence 3555555 5652 2344444 444 899999999877777664211100 111233321 11 112223
Q ss_pred CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 146 EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 146 ~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
..+|++|- ..| .+..+..+.+.|+++|.+
T Consensus 256 ~g~D~vid-~~g-------~~~~~~~a~~~l~~~G~~ 284 (410)
T cd08238 256 QGFDDVFV-FVP-------VPELVEEADTLLAPDGCL 284 (410)
T ss_pred CCCCEEEE-cCC-------CHHHHHHHHHHhccCCeE
Confidence 46898883 333 245777888899987754
No 361
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=51.62 E-value=31 Score=35.17 Aligned_cols=100 Identities=15% Similarity=0.014 Sum_probs=58.8
Q ss_pred ccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------cCC-CCeEEEEeCcccccc----CCCC
Q 039233 83 DRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------EGW-EKTVTIVSCDMRCWD----APEK 147 (359)
Q Consensus 83 d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n~~-~~~V~vi~~d~~~~~----~p~k 147 (359)
|.-.|.|.|+ +...|+.||++ +=.++|........|..+... .|- .+++..++++...-+ +...
T Consensus 194 D~F~DLGSGVGqlv~~~aa~a~~k-~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~e 272 (419)
T KOG3924|consen 194 DVFMDLGSGVGQLVCFVAAYAGCK-KSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTE 272 (419)
T ss_pred CcccCCCcccchhhHHHHHhhccc-cccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhc
Confidence 4458999887 44667778877 778899865555555544332 222 356888898876642 3457
Q ss_pred ccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 148 ADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 148 ~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
+++|+++-.-. +.+|..++= ..-.-+|+|..+|-..
T Consensus 273 atvi~vNN~~F--dp~L~lr~~-eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 273 ATVIFVNNVAF--DPELKLRSK-EILQKCKDGTRIISSK 308 (419)
T ss_pred ceEEEEecccC--CHHHHHhhH-HHHhhCCCcceEeccc
Confidence 89999654332 333322111 2222357777766443
No 362
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.61 E-value=40 Score=32.15 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc---CC-------------CCeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE---GW-------------EKTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n---~~-------------~~~V~vi~~d~~~~~~ 144 (359)
|.=+|+|. ++...+++| .+|+.+|.|++.++.+++.+... +. ..+++.. .+..+ .
T Consensus 4 V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--~ 78 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA--A 78 (288)
T ss_pred EEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH--h
Confidence 34468876 444455666 58999999999888876643221 11 0123322 23222 2
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
-..+|+||. .+.. +.+...+++....+.++++.++.
T Consensus 79 ~~~aD~Vi~-avpe--~~~~k~~~~~~l~~~~~~~~il~ 114 (288)
T PRK09260 79 VADADLVIE-AVPE--KLELKKAVFETADAHAPAECYIA 114 (288)
T ss_pred hcCCCEEEE-eccC--CHHHHHHHHHHHHhhCCCCcEEE
Confidence 257899984 2221 11112345555667788887653
No 363
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=51.22 E-value=10 Score=36.77 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=24.1
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHH
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAV 116 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~ 116 (359)
++|+|.|||. ....|.+-|+. .|.+.|-|.+.+
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~-~~~fqD~na~vl 152 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAV-SVHFQDFNAEVL 152 (282)
T ss_pred ceeEecCCcccccchhhhhhccc-eeeeEecchhhe
Confidence 3689999998 34666666654 888888886544
No 364
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.90 E-value=20 Score=35.67 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCeEEEEeCCHHHHHHHHHH
Q 039233 94 TTAAEETGRKLKIYAVEKNPNAVVTLHSL 122 (359)
Q Consensus 94 ~~~A~~aga~~~V~AVE~n~~a~~~a~~~ 122 (359)
+|=|..+||. +|+|||.|++=.+.|++.
T Consensus 209 ~~Gaka~GAs-rIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 209 AMGAKAAGAS-RIIGVDINPDKFEKAKEF 236 (375)
T ss_pred HHhHHhcCcc-cEEEEecCHHHHHHHHhc
Confidence 3567778888 999999999988777763
No 365
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.81 E-value=23 Score=34.07 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=49.4
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc-------ccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM-------RCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~-------~~~~~p~k~DiIV 152 (359)
.|+=.|+|. +..+|...|++ +|++++.++.-.+.+++ .|.. .++..+- ........+|+++
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G~~-~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~~~~d~il 242 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLGAE-RIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGGVGADAVL 242 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCCCCCCEEE
Confidence 343367765 45677778876 79999988754433332 2331 2333221 1122224689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|+ +..+..+.+.|+++|.++
T Consensus 243 ~-~~g~-------~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 243 E-CVGT-------QESMEQAIAIARPGGRVG 265 (345)
T ss_pred E-CCCC-------HHHHHHHHHhhccCCEEE
Confidence 4 3332 346777888899998865
No 366
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=50.77 E-value=81 Score=28.27 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-ccCCCCccEEEeccccccCCCCChHHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WDAPEKADILVSELLGSFGDNELSPECLDG 171 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~~p~k~DiIVSEllGs~~~~El~~e~L~~ 171 (359)
|+.+|.++| ..|++.+.-.... + |=.....+.-+|+.. .-...++|++|. |+ ++.+..
T Consensus 20 la~aa~~~G--~~v~~~~~yg~~~-------R--GG~~~s~vris~i~sp~~~~~~~Dilva--ld--------~~~~~~ 78 (189)
T TIGR03334 20 IGEAALKAG--LPVRAAETHGMAQ-------R--GGSVINHIRIGEVYGSMIPEGGADLLLA--FE--------PLEALR 78 (189)
T ss_pred HHHHHHHcC--CCeEeeeccCccc-------c--CCeEEEEEEEccccCCccCCCCCCEEEE--eC--------HHHHHH
Confidence 678888888 4788888655211 1 222234455556221 114478999996 32 223334
Q ss_pred HhhccCCCeEEEccc
Q 039233 172 AQRFLKQDGISIPSS 186 (359)
Q Consensus 172 a~r~Lkp~Gi~IP~~ 186 (359)
....|||||++|-++
T Consensus 79 ~~~~l~~~g~ii~n~ 93 (189)
T TIGR03334 79 YLPYLSEGGEVILNT 93 (189)
T ss_pred HHHhcCCCcEEEEeC
Confidence 446789999988553
No 367
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=50.56 E-value=24 Score=34.02 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=49.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc----cccccCCCCccEEEecc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD----MRCWDAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d----~~~~~~p~k~DiIVSEl 155 (359)
+|+=.|+|. +.+.|+..|.. +|++++.++.-...+++ .+....|..-..+ +.++.....+|+++. .
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld-~ 242 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPS-KIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVVIE-A 242 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEEEE-C
Confidence 333356665 34566667755 89999998865554443 2332212211111 112222346899984 3
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.| .+..+..+.+.|+++|.++-
T Consensus 243 ~g-------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 243 VG-------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CC-------CHHHHHHHHHhccCCcEEEE
Confidence 33 23467777789999999874
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=50.46 E-value=48 Score=35.67 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=43.4
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
+.|+=+|+|. ++....+.| .++++||+|++.++.+++ . ...++.||.++.+ .-+++|.+|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh----c----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 4566778886 444444444 589999999987766653 1 2678999999864 2358999886
No 369
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=50.34 E-value=55 Score=31.81 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=47.4
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC---cc----ccccCCCCcc--
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC---DM----RCWDAPEKAD-- 149 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~---d~----~~~~~p~k~D-- 149 (359)
+.|+-.|+|. +..+|...|+ +|++++.++.-.+.|++ .|....|..-.. +. +++.....+|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 3566667776 3355666663 79999999876655543 233221111111 11 1111112344
Q ss_pred --EEEeccccccCCCCChHHHHHHHhhccCCCeEEEcc
Q 039233 150 --ILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPS 185 (359)
Q Consensus 150 --iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~ 185 (359)
+++ |..|+ +..+..+.+.|+++|+++=-
T Consensus 242 ~d~v~-d~~g~-------~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 242 GWKIF-ECSGS-------KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred cCEEE-ECCCC-------hHHHHHHHHHHhcCCeEEEE
Confidence 443 44442 34666777889999987643
No 370
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=50.26 E-value=30 Score=37.93 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=62.5
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CC--------CCeEEEEeCccccccC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GW--------EKTVTIVSCDMRCWDA 144 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~--------~~~V~vi~~d~~~~~~ 144 (359)
|.=+|+|+ ++..++.+| ..|+.+|.++++++.+++.++.+ .+ -.+|++. .|...+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 390 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF-- 390 (715)
T ss_pred EEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh--
Confidence 34567776 666777777 69999999999988776665421 11 1234433 233222
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeeccc
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTA 196 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s 196 (359)
..+|+|| |.. +.+-++-.+++....+.++|+.++-=+..++-+..+..
T Consensus 391 -~~aDlVi-Eav--~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 391 -ERVDVVV-EAV--VENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred -cCCCEEE-ecc--cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 5789888 322 11223345677788889999988755555444444443
No 371
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=50.18 E-value=20 Score=35.91 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-ccccc--cC-CCCccEEEeccccccCCCCChHHHHH
Q 039233 95 TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-DMRCW--DA-PEKADILVSELLGSFGDNELSPECLD 170 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-d~~~~--~~-p~k~DiIVSEllGs~~~~El~~e~L~ 170 (359)
+.|+.+||. +|+|||.|+.-.+.|++. |--+-|.--.. |+-+. ++ +.-+|..+ |..|. .+.++
T Consensus 203 ~gA~~agA~-~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T~gG~d~~~-e~~G~-------~~~~~ 269 (366)
T COG1062 203 QGAKAAGAG-RIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELTDGGADYAF-ECVGN-------VEVMR 269 (366)
T ss_pred HHHHHcCCc-eEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhcCCCCCEEE-EccCC-------HHHHH
Confidence 667789988 999999999887777653 33232211111 11111 11 22577775 55553 45788
Q ss_pred HHhhccCCCeEEE
Q 039233 171 GAQRFLKQDGISI 183 (359)
Q Consensus 171 ~a~r~Lkp~Gi~I 183 (359)
.+...++.+|.++
T Consensus 270 ~al~~~~~~G~~v 282 (366)
T COG1062 270 QALEATHRGGTSV 282 (366)
T ss_pred HHHHHHhcCCeEE
Confidence 8877777788754
No 372
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=49.70 E-value=36 Score=37.47 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred CcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CCC--------CeEEEEeCccccccCC
Q 039233 86 PDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GWE--------KTVTIVSCDMRCWDAP 145 (359)
Q Consensus 86 ~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~~--------~~V~vi~~d~~~~~~p 145 (359)
-=+|+|+ ++..++.+| ..|+.+|.++++++.+.+.++++ .+. .+|+.. .|... -
T Consensus 339 ~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~---~ 412 (737)
T TIGR02441 339 AVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG---F 412 (737)
T ss_pred EEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---h
Confidence 3457776 666777777 68999999999988877776532 011 234433 23222 2
Q ss_pred CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeecc
Q 039233 146 EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVT 195 (359)
Q Consensus 146 ~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~ 195 (359)
..+|+|| |.. +-+-+.-.+++....+.++|+.++-=+..++-+.-+.
T Consensus 413 ~~aDlVi-EAv--~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la 459 (737)
T TIGR02441 413 KNADMVI-EAV--FEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIA 459 (737)
T ss_pred ccCCeeh-hhc--cccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 5789888 322 1122334567777889999998876555544444343
No 373
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.52 E-value=17 Score=35.00 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=47.9
Q ss_pred ccCCcCCh-hH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc-------cccccCCCCccE
Q 039233 83 DRVPDEEA-SS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD-------MRCWDAPEKADI 150 (359)
Q Consensus 83 d~v~D~g~-Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d-------~~~~~~p~k~Di 150 (359)
++|+=.|. |. +..+|+..|++ +|+++..+++-.+.+++. .|... ++..+ ++++. +..+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~-~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~~i~~~~-~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCS-RVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAERLRELC-PEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHHHHHHHC-CCCceE
Confidence 45554453 43 34566777865 899999887655444432 23322 22221 11122 256899
Q ss_pred EEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 151 LVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 151 IVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++. ..|. . .+..+.+.|+++|.++
T Consensus 228 vid-~~g~-------~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 228 YFD-NVGG-------E-ISDTVISQMNENSHII 251 (345)
T ss_pred EEE-CCCc-------H-HHHHHHHHhccCCEEE
Confidence 983 4442 1 3456677899999877
No 374
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=49.45 E-value=23 Score=34.08 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=45.3
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc----ccccCCCCccEEEecc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM----RCWDAPEKADILVSEL 155 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~----~~~~~p~k~DiIVSEl 155 (359)
.++-.|+|. +..+|...|++ +|++++.++.-...+++ .+....+..-..+. .++...+.+|+++. .
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~G~~-~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld-~ 237 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKASGAY-PVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVFLE-M 237 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEEEE-C
Confidence 343356665 33455666754 59999877755444433 23321111111111 11222356899985 1
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| ..+.+....+.|+++|.++
T Consensus 238 ~g-------~~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 238 SG-------APKALEQGLQAVTPGGRVS 258 (340)
T ss_pred CC-------CHHHHHHHHHhhcCCCEEE
Confidence 22 1235566678889999865
No 375
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.29 E-value=60 Score=31.16 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-CC--C--------CeEEEEeCccccccCCCCcc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-GW--E--------KTVTIVSCDMRCWDAPEKAD 149 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-~~--~--------~~V~vi~~d~~~~~~p~k~D 149 (359)
|.=+|+|. ++...+++| .+|+.+|.+++.++.+++.+... +. . .+++. ..|..+ .-+.+|
T Consensus 7 I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--~~~~aD 81 (311)
T PRK06130 7 LAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAA--AVSGAD 81 (311)
T ss_pred EEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHH--HhccCC
Confidence 34468886 444445566 58999999998887776643211 11 0 11222 122222 124689
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+||. .+-. ..+...+++......++++.+++
T Consensus 82 lVi~-av~~--~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 82 LVIE-AVPE--KLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred EEEE-eccC--cHHHHHHHHHHHHHhCCCCcEEE
Confidence 9884 1211 11123445655566677766654
No 376
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=49.03 E-value=20 Score=33.79 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=28.0
Q ss_pred cCCcCChhH---HHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHH
Q 039233 84 RVPDEEASS---LTTAAEETGRK-LKIYAVEKNPNAVVTLHSLVR 124 (359)
Q Consensus 84 ~v~D~g~Gt---l~~~A~~aga~-~~V~AVE~n~~a~~~a~~~~~ 124 (359)
.+.|--||+ |+..+.--+.. ..|+|-|+|+.++++|++|+.
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred eeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 367888887 44444332222 279999999999999999875
No 377
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=48.72 E-value=13 Score=37.00 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=33.8
Q ss_pred HHHHHcCCCCeEEEEeCCHHHH-------HHHHHHHHhcCCCCeEEEEeC-----ccccccCCCCccEEEe-ccccccC
Q 039233 95 TAAEETGRKLKIYAVEKNPNAV-------VTLHSLVRLEGWEKTVTIVSC-----DMRCWDAPEKADILVS-ELLGSFG 160 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~a~-------~~a~~~~~~n~~~~~V~vi~~-----d~~~~~~p~k~DiIVS-EllGs~~ 160 (359)
.+|++-+.+ +|+.|+|+.-+. +.+++.. ..+.+ |++-+. -|+-+.-|+++|+||+ +++|..+
T Consensus 167 e~A~~R~~k-kvTsv~KaNVl~~s~~lwrev~~eva--~~yPd-v~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL 241 (348)
T COG0473 167 ELARKRGRK-KVTSVHKANVLKLSDGLWREVVEEVA--KEYPD-VELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL 241 (348)
T ss_pred HHHHhhCCC-ceEEEehhhhhhhhhHHHHHHHHHHh--hcCCC-cchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence 344554456 999999976433 1233332 12333 433222 2222346899999995 5666544
No 378
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=48.17 E-value=43 Score=26.82 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=36.1
Q ss_pred CChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 88 EEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 88 ~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
+|+|. ++....+.+ .+|+.||.+++.++.+++ .+ +.++.||..+.+ .-+++|.+|.
T Consensus 4 ~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEE
Confidence 46665 334434433 489999999987655543 22 679999999864 2368998885
No 379
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=47.95 E-value=73 Score=31.59 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=44.4
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCC----------------------HHHHHHHHHHHHhcCCCCeEEEEe
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKN----------------------PNAVVTLHSLVRLEGWEKTVTIVS 136 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n----------------------~~a~~~a~~~~~~n~~~~~V~vi~ 136 (359)
.+|+=+|||- ++...+++|.. +|+.||.+ +.+ +.|++++++-+-.-+|+.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka-~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA-VAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHH-HHHHHHHHHHCCCcEEEEEe
Confidence 3688889975 56666788977 99999986 222 34445554322334577777
Q ss_pred Cccccc---cCCCCccEEEe
Q 039233 137 CDMRCW---DAPEKADILVS 153 (359)
Q Consensus 137 ~d~~~~---~~p~k~DiIVS 153 (359)
.+...- ++-..+|+||.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIID 122 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEE
Confidence 776542 22357899995
No 380
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=47.76 E-value=43 Score=32.91 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=46.4
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-C---ccccccCCCCccEEEec
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-C---DMRCWDAPEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~---d~~~~~~p~k~DiIVSE 154 (359)
++|+-.|+|. +..+|+..|+ +|++++.++.-.. +..++.|.. .++. . ++++.. ..+|+++ |
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga--~vi~~~~~~~~~~---~~~~~~Ga~---~vi~~~~~~~~~~~~--~~~D~vi-d 253 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISSSSNKED---EAINRLGAD---SFLVSTDPEKMKAAI--GTMDYII-D 253 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCcchhh---hHHHhCCCc---EEEcCCCHHHHHhhc--CCCCEEE-E
Confidence 4565578876 3455666674 6888887753221 112222331 2221 1 122211 2589988 4
Q ss_pred cccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 155 LLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 155 llGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..| .+..+..+.+.|+++|.++
T Consensus 254 ~~g-------~~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 254 TVS-------AVHALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCC-------CHHHHHHHHHHhcCCcEEE
Confidence 555 2346777888999999876
No 381
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=47.64 E-value=58 Score=28.90 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=39.9
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCH------------------HHHHHHHHHHHhcCCCCeEEEEeCccccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNP------------------NAVVTLHSLVRLEGWEKTVTIVSCDMRCW 142 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~------------------~a~~~a~~~~~~n~~~~~V~vi~~d~~~~ 142 (359)
|+=+|||. ++...+++|.+ +++-+|.+. .=++.+++++++-+-.-+|+.+.....+-
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg-~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVG-NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 44567764 56666788877 888888763 11233444443322334577776666542
Q ss_pred c---CCCCccEEEe
Q 039233 143 D---APEKADILVS 153 (359)
Q Consensus 143 ~---~p~k~DiIVS 153 (359)
. .-+.+|+||.
T Consensus 81 ~~~~~l~~~DlVi~ 94 (174)
T cd01487 81 NLEGLFGDCDIVVE 94 (174)
T ss_pred hHHHHhcCCCEEEE
Confidence 2 2247899985
No 382
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=47.61 E-value=62 Score=31.67 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=49.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC--c----cccccCCCCccEEE
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC--D----MRCWDAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~--d----~~~~~~p~k~DiIV 152 (359)
++|+=.|+|. ...+|...|++ +|++++.+++-.+.|++ .|....+..-.. + ++++. ...+|+++
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~~-~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~~~d~vi 262 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGAS-RIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-GGGVDYSF 262 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-CCCCCEEE
Confidence 4555557776 34566777865 89999999865555533 233221111110 0 11121 23689887
Q ss_pred eccccccCCCCChHHHHHHHhhccCCC-eEEEc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQD-GISIP 184 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~-Gi~IP 184 (359)
|..|. ++.+..+.+.++++ |+++-
T Consensus 263 -d~~G~-------~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 263 -ECTGN-------IDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred -ECCCC-------hHHHHHHHHHhhcCCCEEEE
Confidence 34442 45677777888896 88654
No 383
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.48 E-value=35 Score=29.67 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred CChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCCCC
Q 039233 88 EEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNE 163 (359)
Q Consensus 88 ~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~E 163 (359)
+|.|. ++.-..++| ..|++.|.+++..+.+.+ .+ +++. .+..++ -+.+|+|++=+- +.+
T Consensus 7 IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~----~g----~~~~-~s~~e~--~~~~dvvi~~v~----~~~ 69 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAE----AG----AEVA-DSPAEA--AEQADVVILCVP----DDD 69 (163)
T ss_dssp E--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHH----TT----EEEE-SSHHHH--HHHBSEEEE-SS----SHH
T ss_pred EchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHH----hh----hhhh-hhhhhH--hhcccceEeecc----cch
Confidence 56765 333334555 689999999865544332 22 3332 333332 246799997222 222
Q ss_pred ChHHHHHH--HhhccCCCeEEEcc
Q 039233 164 LSPECLDG--AQRFLKQDGISIPS 185 (359)
Q Consensus 164 l~~e~L~~--a~r~Lkp~Gi~IP~ 185 (359)
-..+++.. ....|++|.++|=.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~ 93 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDM 93 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-
T ss_pred hhhhhhhhhHHhhccccceEEEec
Confidence 34556666 66777888887743
No 384
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=47.26 E-value=68 Score=29.79 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=48.0
Q ss_pred cCcccHHHHHHHHHHhhcccCCcCCh---hHH---HHHHHHcCCCCeEEEEeCCHHHHHH-HHHHHHhcCCCCeEEEEeC
Q 039233 65 KDSVKYIQYQRAIGNALVDRVPDEEA---SSL---TTAAEETGRKLKIYAVEKNPNAVVT-LHSLVRLEGWEKTVTIVSC 137 (359)
Q Consensus 65 ~D~vry~~Y~~AI~~~~~d~v~D~g~---Gtl---~~~A~~aga~~~V~AVE~n~~a~~~-a~~~~~~n~~~~~V~vi~~ 137 (359)
|-+...-.|++-|-+.-.+.|.+.|. |++ +..+...|.+++|.+||++-....- |++ ..+|.+++|
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~eg 125 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEG 125 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeC
Confidence 44555667777776655678888886 563 3345677877899999986432211 111 345999999
Q ss_pred cccccc
Q 039233 138 DMRCWD 143 (359)
Q Consensus 138 d~~~~~ 143 (359)
++++..
T Consensus 126 ss~dpa 131 (237)
T COG3510 126 SSTDPA 131 (237)
T ss_pred CCCCHH
Confidence 999865
No 385
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=47.19 E-value=20 Score=34.64 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=48.1
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiIV 152 (359)
.|+=.|+|. +..+|+..|++ .|++++.++.-...+++ .|. +. ++..+..+ +.....+|+++
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~g~-~~--v~~~~~~~~~~~~~~~~~~~~vdvvl 248 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKNPK-KLIVLDLKDERLALARK----FGA-DV--VLNPPEVDVVEKIKELTGGYGCDIYI 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEEcCCHHHHHHHHH----cCC-cE--EecCCCcCHHHHHHHHhCCCCCCEEE
Confidence 343366665 44667778877 79999998865444332 233 21 23322211 11223589998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|. ...+..+.+.|+++|.+|
T Consensus 249 d-~~g~-------~~~~~~~~~~l~~~G~~v 271 (350)
T cd08256 249 E-ATGH-------PSAVEQGLNMIRKLGRFV 271 (350)
T ss_pred E-CCCC-------hHHHHHHHHHhhcCCEEE
Confidence 4 3331 235666778889998864
No 386
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=46.91 E-value=1e+02 Score=25.82 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHhh---c-ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC
Q 039233 73 YQRAIGNAL---V-DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA 144 (359)
Q Consensus 73 Y~~AI~~~~---~-d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~ 144 (359)
..+|+.++- + .++.-+|+|. ++....+.|.. +|+.++.++...+.+.+..... . +.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~-~v~v~~r~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAA-KIVIVNRTLEKAKALAERFGEL-G---IAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHhhc-c---cceeecchhhc--
Confidence 445565542 2 2466678875 33333445434 8999999986554433332211 0 12222333332
Q ss_pred CCCccEEEecc
Q 039233 145 PEKADILVSEL 155 (359)
Q Consensus 145 p~k~DiIVSEl 155 (359)
-+++|+||+=+
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 36899999743
No 387
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=46.86 E-value=34 Score=32.06 Aligned_cols=76 Identities=8% Similarity=-0.001 Sum_probs=48.8
Q ss_pred cCCcCChhHHH----HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASSLT----TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gtl~----~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=+|.|.++ ....++||++.|+|-|.+++....++ .++|+++..+.+.-++ +.+++||.= .
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~--------~~~i~~~~r~~~~~dl-~g~~LViaA----T 93 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK--------YGNLKLIKGNYDKEFI-KDKHLIVIA----T 93 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh--------CCCEEEEeCCCChHHh-CCCcEEEEC----C
Confidence 47888999733 33456899999999999987543322 2459999877665444 467888752 2
Q ss_pred CCCCChHHHHHHH
Q 039233 160 GDNELSPECLDGA 172 (359)
Q Consensus 160 ~~~El~~e~L~~a 172 (359)
.+.++...+-..|
T Consensus 94 dD~~vN~~I~~~a 106 (223)
T PRK05562 94 DDEKLNNKIRKHC 106 (223)
T ss_pred CCHHHHHHHHHHH
Confidence 2444444444444
No 388
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=46.76 E-value=24 Score=33.75 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=43.6
Q ss_pred CChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEEEeccc
Q 039233 88 EEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADILVSELL 156 (359)
Q Consensus 88 ~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiIVSEll 156 (359)
.|+|. +..+|+..|+ +|++++.++.-.+.+++ .|... ++..+-.+ +.....+|+++ +..
T Consensus 151 ~g~g~vG~~a~q~a~~~G~--~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~~v~~~~~~~~~d~vi-d~~ 220 (324)
T cd08291 151 AAASALGRMLVRLCKADGI--KVINIVRRKEQVDLLKK----IGAEY---VLNSSDPDFLEDLKELIAKLNATIFF-DAV 220 (324)
T ss_pred cCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cCCcE---EEECCCccHHHHHHHHhCCCCCcEEE-ECC
Confidence 46665 3345566663 79999999866555543 23322 33222222 22234689998 344
Q ss_pred cccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 157 GSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 157 Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
|. . ......+.|+++|.++=
T Consensus 221 g~-------~-~~~~~~~~l~~~G~~v~ 240 (324)
T cd08291 221 GG-------G-LTGQILLAMPYGSTLYV 240 (324)
T ss_pred Cc-------H-HHHHHHHhhCCCCEEEE
Confidence 42 1 23334567889998654
No 389
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=46.45 E-value=88 Score=29.57 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=47.9
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=.|+|. +...|+..|+ +|+++..+++..+.+++ .|....+ ... +....+.+|+++. ..|.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~--~vi~~~~~~~~~~~~~~----~g~~~~~-~~~----~~~~~~~~d~vid-~~g~- 224 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGP--DVVLVGRHSEKLALARR----LGVETVL-PDE----AESEGGGFDVVVE-ATGS- 224 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH----cCCcEEe-Ccc----ccccCCCCCEEEE-CCCC-
Confidence 454447766 3355666773 69999999877666655 2332211 111 1123356999984 2331
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.+.+..+.+.|+++|.++
T Consensus 225 ------~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 225 ------PSGLELALRLVRPRGTVV 242 (319)
T ss_pred ------hHHHHHHHHHhhcCCEEE
Confidence 235667777889999876
No 390
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=46.41 E-value=26 Score=34.73 Aligned_cols=87 Identities=18% Similarity=0.091 Sum_probs=48.3
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC----c----cccccCCCCccEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC----D----MRCWDAPEKADIL 151 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~----d----~~~~~~p~k~DiI 151 (359)
.|+=.|+|. +..+|+..|+. +|++++.++.-...+++ .|. +.+--.+. + ++++.....+|+|
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G~~-~vi~~~~~~~~~~~~~~----~g~-~~~v~~~~~~~~~~~~~v~~~~~g~gvDvv 279 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAGAS-KVIAFEISEERRNLAKE----MGA-DYVFNPTKMRDCLSGEKVMEVTKGWGADIQ 279 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHH----cCC-CEEEcccccccccHHHHHHHhcCCCCCCEE
Confidence 443337776 34566777865 89999988764333332 333 22211111 1 1122223468998
Q ss_pred EeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 152 VSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 152 VSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+. ..|. ....+..+.+.|+++|.++
T Consensus 280 ld-~~g~------~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 280 VE-AAGA------PPATIPQMEKSIAINGKIV 304 (384)
T ss_pred EE-CCCC------cHHHHHHHHHHHHcCCEEE
Confidence 84 3331 1235667778899999876
No 391
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=46.30 E-value=61 Score=29.93 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=44.1
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCC-------------------HHHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKN-------------------PNAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n-------------------~~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
-+|+=+|||. ++...+++|.+ +++.+|-+ ..=++.+++++++-+-.-+|+.+..++
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i 100 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEeccee
Confidence 3688889875 56667889987 88888422 122334455554432334577777665
Q ss_pred cccc---CCCCccEEEeccccc
Q 039233 140 RCWD---APEKADILVSELLGS 158 (359)
Q Consensus 140 ~~~~---~p~k~DiIVSEllGs 158 (359)
..-. .-..+|+||. ..++
T Consensus 101 ~~~~~~~~~~~~DvVi~-~~d~ 121 (228)
T cd00757 101 DAENAEELIAGYDLVLD-CTDN 121 (228)
T ss_pred CHHHHHHHHhCCCEEEE-cCCC
Confidence 3321 2246999996 3444
No 392
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=46.24 E-value=60 Score=30.97 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=46.7
Q ss_pred cCCcCChhH--HHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHh-----cCCCCeEEEEeCc---ccccc-CCCC-ccE
Q 039233 84 RVPDEEASS--LTTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRL-----EGWEKTVTIVSCD---MRCWD-APEK-ADI 150 (359)
Q Consensus 84 ~v~D~g~Gt--l~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~-----n~~~~~V~vi~~d---~~~~~-~p~k-~Di 150 (359)
+|+++|+|+ ..++|+. .++ .| .++-.+..+..++.+... ++++..|.+..-+ .-+.. .+.. +|+
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~--~v-~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGA--EV-VLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcc--ee-ccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 488888887 3444454 443 33 334444456666665433 3344444433221 11111 1233 899
Q ss_pred EEeccccccCCCCChHHHHHHH-hhccCCCe
Q 039233 151 LVSELLGSFGDNELSPECLDGA-QRFLKQDG 180 (359)
Q Consensus 151 IVSEllGs~~~~El~~e~L~~a-~r~Lkp~G 180 (359)
|+. -+++-+.+ ++|-|.+. ..+|..+|
T Consensus 166 ila--sDvvy~~~-~~e~Lv~tla~ll~~~~ 193 (248)
T KOG2793|consen 166 ILA--SDVVYEEE-SFEGLVKTLAFLLAKDG 193 (248)
T ss_pred EEE--eeeeecCC-cchhHHHHHHHHHhcCC
Confidence 995 45555444 45555554 56677777
No 393
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.22 E-value=38 Score=37.03 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=60.6
Q ss_pred CCcCChhH----HHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CCC--------CeEEEEeCcccccc
Q 039233 85 VPDEEASS----LTTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GWE--------KTVTIVSCDMRCWD 143 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~~--------~~V~vi~~d~~~~~ 143 (359)
|.=+|+|+ ++..++ ++| ..|+.+|.+++++..+++++++. .+. .+|++. .|..
T Consensus 312 v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 385 (708)
T PRK11154 312 VGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR--- 385 (708)
T ss_pred EEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH---
Confidence 34457776 444444 777 68999999999888877665431 111 235444 2222
Q ss_pred CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeecc
Q 039233 144 APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVT 195 (359)
Q Consensus 144 ~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~ 195 (359)
.-..+|+|| |.. +-+-+.-.+++....+.++|+.++-=+..++-+.-+.
T Consensus 386 ~~~~aDlVi-Eav--~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la 434 (708)
T PRK11154 386 GFKHADVVI-EAV--FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIA 434 (708)
T ss_pred HhccCCEEe-ecc--cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 125789888 322 1122234567777788999998886555554444443
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.15 E-value=29 Score=35.23 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=43.2
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc----CCCCccEEEec
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD----APEKADILVSE 154 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~----~p~k~DiIVSE 154 (359)
+++-+|||. ++..+++.|. .+|+..+.+++.+..+.... ..+++.+.-|+.+.+ +-.+.|++|+=
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 466789886 3333344454 49999999986554444332 227999999998873 23456999983
No 395
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=45.03 E-value=46 Score=31.64 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=41.1
Q ss_pred CChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCCCC
Q 039233 88 EEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNE 163 (359)
Q Consensus 88 ~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~E 163 (359)
+|+|. ++....++| .+|++++.++...+.+++. +. +.....+. +.-..+|+||-= +- ..
T Consensus 6 IG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~---~~~~~aDlVila-vp----~~ 68 (279)
T PRK07417 6 VGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIER----GL---VDEASTDL---SLLKDCDLVILA-LP----IG 68 (279)
T ss_pred EeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHC----CC---cccccCCH---hHhcCCCEEEEc-CC----HH
Confidence 57775 444445555 5899999998766555432 22 22122222 123578998841 11 11
Q ss_pred ChHHHHHHHhhccCCCeEE
Q 039233 164 LSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 164 l~~e~L~~a~r~Lkp~Gi~ 182 (359)
...+++......++++.++
T Consensus 69 ~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHHhCCCCcEE
Confidence 1234555555566666544
No 396
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=44.80 E-value=66 Score=29.66 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=46.8
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+++-.|+|. +...|...|++ +|++++.+++-...+++. |..+.+..... .......+|+++. ..|.
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~~~~~~~d~vl~-~~~~- 169 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEAL----GPADPVAADTA---DEIGGRGADVVIE-ASGS- 169 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHc----CCCccccccch---hhhcCCCCCEEEE-ccCC-
Confidence 444447765 34556667765 599999888655544432 31122211111 1112346899884 2221
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
...+..+.+.|+++|.++
T Consensus 170 ------~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 170 ------PSALETALRLLRDRGRVV 187 (277)
T ss_pred ------hHHHHHHHHHhcCCcEEE
Confidence 235566678899999865
No 397
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.80 E-value=66 Score=34.42 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=42.1
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----CCCccEEEe
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----PEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----p~k~DiIVS 153 (359)
+.|+=+|.|. +.....+.| ..|++||.|++.++.+++ . ...++.||..+.+. -+++|.+|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 3455567775 444444444 589999999987776653 1 26789999998642 368999886
No 398
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=44.74 E-value=65 Score=32.11 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=46.9
Q ss_pred hhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEE
Q 039233 80 ALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 80 ~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi 135 (359)
.+++ +|+=+|||- ++...+++|.+ +++.||-+. .=++.|++++++.+-.-+|+.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVG-HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 3443 688889875 55666789988 999998653 1233455555543344567777
Q ss_pred eCccccc---cCCCCccEEEe
Q 039233 136 SCDMRCW---DAPEKADILVS 153 (359)
Q Consensus 136 ~~d~~~~---~~p~k~DiIVS 153 (359)
..++..- ++.+.+|+||.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd 124 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILD 124 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEE
Confidence 7766542 23467999995
No 399
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=43.85 E-value=1.3e+02 Score=26.78 Aligned_cols=71 Identities=27% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc---cCCCCccEEEeccccccCCCCChHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW---DAPEKADILVSELLGSFGDNELSPECL 169 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~---~~p~k~DiIVSEllGs~~~~El~~e~L 169 (359)
|+.++++.| ..|++.+.=.... + |=....++.-++ +.+ .+..++|++|+ + .++.+
T Consensus 21 la~a~~~~G--~~V~~~~~ygs~~-------R--GG~~~~~vris~-~~i~~~~~~~~~D~lva--~--------~~~~~ 78 (181)
T PRK08534 21 LAKAAFEDG--KFSQAFPFFGVER-------R--GAPVMAFTRIDD-KPIRLRSQIYEPDYVIV--Q--------DPTLL 78 (181)
T ss_pred HHHHHHhcC--CeEEEEeccChhh-------c--CCcEEEEEEEcC-CcccCcccCCCCCEEEE--c--------CHHHh
Confidence 667888887 5888888755211 1 211223332233 222 24468899996 2 34455
Q ss_pred HHH--hhccCCCeEEEcc
Q 039233 170 DGA--QRFLKQDGISIPS 185 (359)
Q Consensus 170 ~~a--~r~Lkp~Gi~IP~ 185 (359)
... ...|+|||++|=+
T Consensus 79 ~~~~~~~~l~~gg~vi~n 96 (181)
T PRK08534 79 DSVDVTSGLKKDGIIIIN 96 (181)
T ss_pred cchhHhcCcCCCcEEEEE
Confidence 432 4679999998844
No 400
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.78 E-value=50 Score=28.08 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=43.7
Q ss_pred HhhcccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--CCCCccEEEe
Q 039233 79 NALVDRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--APEKADILVS 153 (359)
Q Consensus 79 ~~~~d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--~p~k~DiIVS 153 (359)
.+-+.+|.++|-|- ++...++.| +.|.|+|+|+. .|. .-+..+.-|+.+-+ +-+-+|+|-|
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc---cCc---------ccceEEEccCCCccHHHhhCccceee
Confidence 44556899999996 555555666 68999999985 211 23778888887743 3467899987
No 401
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=43.63 E-value=31 Score=33.67 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=48.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-------cCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-------DAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-------~~p~k~DiIV 152 (359)
+|+-.|+|. +..+|+..|++ +|++++.++.-.+.+++ .+. ..++..+..++ .....+|+|+
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G~~-~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFGAS-PIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCCCCEEE
Confidence 343336654 44666777765 69999988765555433 233 23343332221 1234689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|+ .+.+..+.+.|+++|.++
T Consensus 262 d-~vg~-------~~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 262 E-ALGK-------PETFKLALDVVRDGGRAV 284 (367)
T ss_pred E-eCCC-------HHHHHHHHHHHhcCCEEE
Confidence 4 4442 124566678899999876
No 402
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=43.44 E-value=1.4e+02 Score=26.77 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-C---CCCccEEEeccccccCCCCChHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-A---PEKADILVSELLGSFGDNELSPEC 168 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~---p~k~DiIVSEllGs~~~~El~~e~ 168 (359)
|+.++.+.| ..|.+.+..... ++ .|. ....+.-++ .+. + ++++|++|+ ++ ++.
T Consensus 23 la~a~~~~G--~~v~~~~~~g~s-------~r-GG~-~~~~vris~--~i~s~~~~~~~~D~lva--~d--------~~~ 79 (197)
T PRK06853 23 LGEAALAAG--YDVKVSEVHGMS-------QR-GGS-VVSHVRFGD--EVYSPLIPEGKADLLLA--FE--------PLE 79 (197)
T ss_pred HHHHHHHcC--CceEeeeccCch-------hc-CCc-EEEEEEEcC--ccCCCccCCCCCCEEEE--eC--------HHH
Confidence 667778887 477777654321 11 222 224444455 332 2 237999996 33 234
Q ss_pred HHHHhhccCCCeEEEccc
Q 039233 169 LDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 169 L~~a~r~Lkp~Gi~IP~~ 186 (359)
+......|||||++|-++
T Consensus 80 ~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 80 ALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred HHHHHHhcCCCcEEEEEC
Confidence 444456789999999664
No 403
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=43.19 E-value=43 Score=33.31 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-CCCccEEEeccccccCCCCChHHHH-H
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-PEKADILVSELLGSFGDNELSPECL-D 170 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-p~k~DiIVSEllGs~~~~El~~e~L-~ 170 (359)
-+.+|.-.| .+|+-+|.|.+-+..+.. -++.||+.+...+..++. -.++|++|.-.+= ..+-.|... .
T Consensus 183 aAkiA~glg--A~Vtild~n~~rl~~ldd-----~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI---pgakaPkLvt~ 252 (371)
T COG0686 183 AAKIAIGLG--ADVTILDLNIDRLRQLDD-----LFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI---PGAKAPKLVTR 252 (371)
T ss_pred HHHHHhccC--CeeEEEecCHHHHhhhhH-----hhCceeEEEEcCHHHHHHHhhhccEEEEEEEe---cCCCCceehhH
Confidence 346666666 489999999864444333 267789999998888753 3589999964321 223345333 3
Q ss_pred HHhhccCCCeEEE
Q 039233 171 GAQRFLKQDGISI 183 (359)
Q Consensus 171 ~a~r~Lkp~Gi~I 183 (359)
.-.+.+|||+.+|
T Consensus 253 e~vk~MkpGsViv 265 (371)
T COG0686 253 EMVKQMKPGSVIV 265 (371)
T ss_pred HHHHhcCCCcEEE
Confidence 3367889977654
No 404
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=43.10 E-value=20 Score=32.24 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-Cccc-cc-cCCCCccEEEe----cc--ccccCC--
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-CDMR-CW-DAPEKADILVS----EL--LGSFGD-- 161 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~d~~-~~-~~p~k~DiIVS----El--lGs~~~-- 161 (359)
+=.+|.+.||+ +|..||-|+- .+ + +.+.+|+.=+. .|.- +| .-.+++|.+.| |- +|-.||
T Consensus 15 vEv~aL~~GA~-~iltveyn~L--~i-~-----~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRYGDPi 85 (177)
T PF03269_consen 15 VEVMALQHGAA-KILTVEYNKL--EI-Q-----EEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRYGDPI 85 (177)
T ss_pred hhHHHHHcCCc-eEEEEeeccc--cc-C-----cccccccccccHHHHHHHHHHhhccchhhheechhccccccccCCCC
Confidence 33567888988 9999999862 21 1 12334332221 1111 12 23468999886 22 222332
Q ss_pred -CCChHHHHHHHhhccCCCeEEEccccceeeeeccchhh
Q 039233 162 -NELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTASKL 199 (359)
Q Consensus 162 -~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~s~~l 199 (359)
-..-.+-+..+.+.||+||.++ ...|+..+.+
T Consensus 86 dp~Gdl~~m~~i~~vLK~GG~L~------l~vPvG~d~i 118 (177)
T PF03269_consen 86 DPIGDLRAMAKIKCVLKPGGLLF------LGVPVGTDAI 118 (177)
T ss_pred CccccHHHHHHHHHhhccCCeEE------EEeecCCcce
Confidence 2223345566678999999853 3456655443
No 405
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=42.99 E-value=78 Score=30.45 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=45.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|.=+|+|. ++....++|...+|++++.++...+.+++ .+..+. +..+..+ .-+.+|+||.= ...
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~~---~~~~~~~--~~~~aDvViia-vp~- 76 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGDR---VTTSAAE--AVKGADLVILC-VPV- 76 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCce---ecCCHHH--HhcCCCEEEEC-CCH-
Confidence 345568875 44445556643489999999976555432 233221 1122221 12468998841 211
Q ss_pred CCCCChHHHHHHHhhccCCCeEEE
Q 039233 160 GDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 160 ~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
....+++.....+++++++++
T Consensus 77 ---~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 ---GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ---HHHHHHHHHHHhhCCCCCEEE
Confidence 112345554455677776554
No 406
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.97 E-value=75 Score=31.07 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHcCCCCeEEEEeCCHH-------HHHHHHHHHHh-------cC-C--------CCeEEEEeC-ccccccC
Q 039233 89 EASSLTTAAEETGRKLKIYAVEKNPN-------AVVTLHSLVRL-------EG-W--------EKTVTIVSC-DMRCWDA 144 (359)
Q Consensus 89 g~Gtl~~~A~~aga~~~V~AVE~n~~-------a~~~a~~~~~~-------n~-~--------~~~V~vi~~-d~~~~~~ 144 (359)
|+| ++..++.+| ..|..+|.+++ +++.+++++++ .| + -.+|++... |..+ .
T Consensus 2 G~g-iA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--a 76 (314)
T PRK08269 2 GQG-IALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD--A 76 (314)
T ss_pred cHH-HHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH--H
Confidence 555 445555677 68999999984 24445555432 11 1 124655532 1111 1
Q ss_pred CCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEE
Q 039233 145 PEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 145 p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~ 182 (359)
-..+|+||- .+- .+.+.-.+++....+.++|++++
T Consensus 77 ~~~aD~ViE-av~--E~~~~K~~~f~~l~~~~~~~~il 111 (314)
T PRK08269 77 LADADLVFE-AVP--EVLDAKREALRWLGRHVDADAII 111 (314)
T ss_pred hccCCEEEE-CCc--CCHHHHHHHHHHHHhhCCCCcEE
Confidence 257899983 221 11222344666677889999887
No 407
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=42.68 E-value=27 Score=32.76 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=38.3
Q ss_pred cCCcCChhH--HH----HHHHHc----CCCCeEEEEeCCHHHHHHHHHHHHh-----cCCCCeEEEEeCccccccCCCCc
Q 039233 84 RVPDEEASS--LT----TAAEET----GRKLKIYAVEKNPNAVVTLHSLVRL-----EGWEKTVTIVSCDMRCWDAPEKA 148 (359)
Q Consensus 84 ~v~D~g~Gt--l~----~~A~~a----ga~~~V~AVE~n~~a~~~a~~~~~~-----n~~~~~V~vi~~d~~~~~~p~k~ 148 (359)
.++++|.|+ |+ ....+. -.+.+++-||.||.+.+.-++++.. .....+|..+ .+..+. | ..
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~--p-~~ 96 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEV--P-FP 96 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----CC
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhcc--c-CC
Confidence 468888765 43 111111 1235899999999877665655543 1255667773 344433 2 33
Q ss_pred cEEEe-cccccc
Q 039233 149 DILVS-ELLGSF 159 (359)
Q Consensus 149 DiIVS-EllGs~ 159 (359)
=+||+ |+++.+
T Consensus 97 ~~iiaNE~~DAl 108 (252)
T PF02636_consen 97 GFIIANELFDAL 108 (252)
T ss_dssp EEEEEESSGGGS
T ss_pred EEEEEeeehhcC
Confidence 44443 666654
No 408
>PLN02702 L-idonate 5-dehydrogenase
Probab=42.64 E-value=1.2e+02 Score=29.54 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=49.3
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC---ccc----cc--cCCCCccE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC---DMR----CW--DAPEKADI 150 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~---d~~----~~--~~p~k~Di 150 (359)
.|+=.|+|. +..+|...|++ .|++++.++...+.+++ .+... +..+.. +.. .+ ....++|+
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 257 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFGAP-RIVIVDVDDERLSVAKQ----LGADE-IVLVSTNIEDVESEVEEIQKAMGGGIDV 257 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----hCCCE-EEecCcccccHHHHHHHHhhhcCCCCCE
Confidence 344347665 34667778877 79999998765554443 23322 222211 111 11 12346898
Q ss_pred EEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 151 LVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 151 IVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
++. ..|. +..+..+.+.|+++|+++
T Consensus 258 vid-~~g~-------~~~~~~~~~~l~~~G~~v 282 (364)
T PLN02702 258 SFD-CVGF-------NKTMSTALEATRAGGKVC 282 (364)
T ss_pred EEE-CCCC-------HHHHHHHHHHHhcCCEEE
Confidence 884 3331 246777788899999876
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=42.44 E-value=1.5e+02 Score=30.13 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=20.8
Q ss_pred CCcCChhH--HHHH--HHHcCCCCeEEEEeCCHHHHHH
Q 039233 85 VPDEEASS--LTTA--AEETGRKLKIYAVEKNPNAVVT 118 (359)
Q Consensus 85 v~D~g~Gt--l~~~--A~~aga~~~V~AVE~n~~a~~~ 118 (359)
|.=+|.|. ++++ .+++| .+|+++|.|+..++.
T Consensus 6 I~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDT 41 (415)
T ss_pred EEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHH
Confidence 33457775 3344 34555 599999999976654
No 410
>PRK07063 short chain dehydrogenase; Provisional
Probab=42.27 E-value=1.1e+02 Score=27.92 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+.++.+++..+.+.+.+...+.+.++.++.+|+.+.+. ..++|++|..
T Consensus 23 ~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 93 (260)
T PRK07063 23 IARAFAREG--AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNN 93 (260)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 555555666 47889999887766665555443345679999999987531 1468999964
No 411
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=41.87 E-value=32 Score=33.63 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=47.9
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc-------cccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR-------CWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~-------~~~~p~k~DiIV 152 (359)
+|+-.|+|. +..+|+..|++ +|+++..++.-.+.+++ .+. -.++..+-. .+.....+|+++
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G~~-~Vi~~~~~~~~~~~~~~----~g~---~~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAGAS-RIIAVDPVPEKLELARR----FGA---THTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHHHH----hCC---eEEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 444346654 44667777755 69999888765444432 233 233333221 122235689888
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..|. .+.+..+.+.|+++|.++
T Consensus 257 d-~~~~-------~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 257 E-AVGR-------AATIRQALAMTRKGGTAV 279 (363)
T ss_pred E-cCCC-------hHHHHHHHHHhhcCCeEE
Confidence 4 2331 246677788899999875
No 412
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=40.91 E-value=28 Score=33.57 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHH---hhc--ccCCcCChhH-------HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Q 039233 67 SVKYIQYQRAIGN---ALV--DRVPDEEASS-------LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTI 134 (359)
Q Consensus 67 ~vry~~Y~~AI~~---~~~--d~v~D~g~Gt-------l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~v 134 (359)
-+||.|--+.|.. ++. -+|+-.|+|+ -+.+-+-......++-.|.++- ..|--..
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~ 108 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQS 108 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEE
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCc
Confidence 4677776666643 222 3678888765 1222222222346777777652 2344567
Q ss_pred EeCccccccCCCCccEEEeccccc--------cCCCCChHHHHHHH-hhccCCCeEE
Q 039233 135 VSCDMRCWDAPEKADILVSELLGS--------FGDNELSPECLDGA-QRFLKQDGIS 182 (359)
Q Consensus 135 i~~d~~~~~~p~k~DiIVSEllGs--------~~~~El~~e~L~~a-~r~Lkp~Gi~ 182 (359)
+-+|.+.+.++.|+|+|||.+-+. -...|.....|-+. ..-|+-||.+
T Consensus 109 ~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSv 165 (299)
T PF06460_consen 109 IVGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSV 165 (299)
T ss_dssp EES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEE
T ss_pred eeccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceE
Confidence 889999999999999999998742 12334444455443 5678888864
No 413
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=40.44 E-value=41 Score=32.30 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=46.3
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCc-------cccccCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCD-------MRCWDAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d-------~~~~~~p~k~DiIV 152 (359)
.|+-.|+|. +..+|...|++ +|+++..++.-.+.+++ -|. +. ++..+ ++++...+.+|+++
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~-~v~~~~~~~~~~~~~~~----lg~-~~--~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGAR-HVVITDVNEYRLELARK----MGA-TR--AVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHH----hCC-cE--EecCccccHHHHHHHhcCCCCCCEEE
Confidence 343356655 34566677865 78888877754444433 232 21 22111 11222235689887
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
. ..|+ ...+..+.+.|+++|.++=
T Consensus 238 d-~~g~-------~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 238 E-MSGA-------PSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred E-CCCC-------HHHHHHHHHHHhcCCEEEE
Confidence 4 3332 3356666778889888643
No 414
>PRK08328 hypothetical protein; Provisional
Probab=40.38 E-value=1.2e+02 Score=28.19 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=42.4
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH--------------------HHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNP--------------------NAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~--------------------~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
+|+=+|||- ++...+++|.+ +++.+|-+. ..++.|++++++.+-.-+|+.+.+..
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVG-RILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 688889875 56667889988 898888321 13444555555433344566666655
Q ss_pred cccc---CCCCccEEEe
Q 039233 140 RCWD---APEKADILVS 153 (359)
Q Consensus 140 ~~~~---~p~k~DiIVS 153 (359)
.+-. +-+.+|+||.
T Consensus 108 ~~~~~~~~l~~~D~Vid 124 (231)
T PRK08328 108 SEENIDEVLKGVDVIVD 124 (231)
T ss_pred CHHHHHHHHhcCCEEEE
Confidence 4321 2257899985
No 415
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=40.20 E-value=8.6 Score=38.15 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=41.2
Q ss_pred HHHHHcCCCCeEEEEeCCHH-------HHHHHHHHHHhcCCCC----eEEEEeCccccccCCCCccEEE-eccccccC
Q 039233 95 TAAEETGRKLKIYAVEKNPN-------AVVTLHSLVRLEGWEK----TVTIVSCDMRCWDAPEKADILV-SELLGSFG 160 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~-------a~~~a~~~~~~n~~~~----~V~vi~~d~~~~~~p~k~DiIV-SEllGs~~ 160 (359)
.+|.+.|+| ||+||-|... -++.+++..+. +.+ .+.|=+.-|+-+.-|+.+|++| +++.|.+.
T Consensus 195 ~yA~k~gRK-kVTaVHKAnimKL~DGlFle~~~eva~~--Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgnii 269 (375)
T KOG0784|consen 195 EYAKKNGRK-KVTAVHKANIMKLGDGLFLESCQEVAKK--YPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNII 269 (375)
T ss_pred HHHHHhCCc-eEEEEeccCceecchhhHHHHHHHHHhc--CCCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHH
Confidence 568899999 9999998532 24556665543 332 2334455566677789999998 45656543
No 416
>PRK10083 putative oxidoreductase; Provisional
Probab=39.84 E-value=79 Score=30.18 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=47.2
Q ss_pred ccCCcCChhHH----HHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-cc-CCCCccEEEecc
Q 039233 83 DRVPDEEASSL----TTAAEE-TGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-WD-APEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gtl----~~~A~~-aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-~~-~p~k~DiIVSEl 155 (359)
++|+=.|+|.+ ..+|+. .|++ .|++++.++.-.+.+++ .|....+..-..+..+ +. ....+|+++. .
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~-~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid-~ 235 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVK-AVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEEKGIKPTLIID-A 235 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhcCCCCCCEEEE-C
Confidence 35555676652 344554 4877 79999998866655543 2332211111111111 11 1123567763 3
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| .+..+..+.+.|+++|.++
T Consensus 236 ~g-------~~~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 236 AC-------HPSILEEAVTLASPAARIV 256 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEE
Confidence 33 2346677778999999876
No 417
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.76 E-value=1.3e+02 Score=27.08 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEe
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVS 153 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVS 153 (359)
++..+.+.| .+|+++..|+.....+.+.++. .+.++.++.+|+.+.+. -.++|++|.
T Consensus 22 la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 89 (241)
T PRK07454 22 TALAFAKAG--WDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLIN 89 (241)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 555555666 3899999998655544444432 34579999999988641 135899996
No 418
>PRK08267 short chain dehydrogenase; Provisional
Probab=38.07 E-value=1.2e+02 Score=27.68 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc--------C----CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD--------A----PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~--------~----p~k~DiIVSE 154 (359)
++...++.| .+|++++.+++....+.+... +.+++++++|+.+.+ . ..++|++|..
T Consensus 17 la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ 84 (260)
T PRK08267 17 TALLFAAEG--WRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNN 84 (260)
T ss_pred HHHHHHHCC--CeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEEC
Confidence 555555667 489999998875554443322 457999999999853 1 3478999963
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=37.98 E-value=84 Score=31.70 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=41.5
Q ss_pred cCCcCChhHH----HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 84 RVPDEEASSL----TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gtl----~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
.++=+|+|.+ +....+.| ..|++||.+++.+..+++. . ..+.++.||..+.+ ..+++|.+|+
T Consensus 233 ~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~-----~-~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 233 RVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEE-----L-PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHH-----C-CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4566788863 33333334 5899999999877665543 1 23778999987643 2368999886
No 420
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=37.51 E-value=47 Score=31.70 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=46.8
Q ss_pred ccCCcCC-hhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC--cccc-c--cCCCCccEEE
Q 039233 83 DRVPDEE-ASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC--DMRC-W--DAPEKADILV 152 (359)
Q Consensus 83 d~v~D~g-~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~--d~~~-~--~~p~k~DiIV 152 (359)
++|+=.| +|. +..+|+..|+ +|+++..+++-.+.+++ .|... +--... +..+ + .....+|+++
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~--~Vi~~~~s~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKVAYLKK----LGFDV-AFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cCCCE-EEeccccccHHHHHHHhCCCCeEEEE
Confidence 3555445 343 4466777774 79999988865555433 34322 111111 1111 1 1124689888
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+..|. +.+..+.+.|+++|.++
T Consensus 213 -d~~G~--------~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 213 -DNVGG--------EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred -ECCCH--------HHHHHHHHHhCcCcEEE
Confidence 34442 24456678899999987
No 421
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=37.48 E-value=7.6 Score=32.42 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=25.6
Q ss_pred CccEEEe----cccc-ccCCCCChHHHHHHHhhccCCCeEEE--ccccceee
Q 039233 147 KADILVS----ELLG-SFGDNELSPECLDGAQRFLKQDGISI--PSSYTSFI 191 (359)
Q Consensus 147 k~DiIVS----EllG-s~~~~El~~e~L~~a~r~Lkp~Gi~I--P~~~t~~~ 191 (359)
++|+|.+ -|+- ..|| +++...+..+.+.|+|||++| |+...+|-
T Consensus 1 ~yDvilclSVtkWIHLn~GD-~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~ 51 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGD-EGLKRFFRRIYSLLRPGGILILEPQPWKSYK 51 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHH-HHHHHHHHHHHHHEEEEEEEEEE---HHHHH
T ss_pred CccEEEEEEeeEEEEecCcC-HHHHHHHHHHHHhhCCCCEEEEeCCCcHHHH
Confidence 4688875 1111 1233 345668888899999999976 55544444
No 422
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=37.34 E-value=1.4e+02 Score=27.97 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=42.6
Q ss_pred hhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEE
Q 039233 80 ALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 80 ~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi 135 (359)
.+++ +|+=+|+|. ++...+++|.+ +++-||.+. .=++.|++++++-+-.-+|+.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVG-TLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3443 677888875 55666788987 888886421 1123344444432233457777
Q ss_pred eCcccccc---CCCCccEEEe
Q 039233 136 SCDMRCWD---APEKADILVS 153 (359)
Q Consensus 136 ~~d~~~~~---~p~k~DiIVS 153 (359)
.....+-. .-..+|+||.
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~ 128 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLD 128 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEe
Confidence 76655422 1257999995
No 423
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=37.19 E-value=1.2e+02 Score=25.40 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=39.3
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEeCcccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIVSCDMRC 141 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi~~d~~~ 141 (359)
|+=+|||. ++...+++|.+ +++-+|.+. .=++.+++.+++.+-.-+|+.+.....+
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 34467764 55666788877 888887541 1123344444433233456667666554
Q ss_pred c---cCCCCccEEEe
Q 039233 142 W---DAPEKADILVS 153 (359)
Q Consensus 142 ~---~~p~k~DiIVS 153 (359)
. +.-.++|+||.
T Consensus 81 ~~~~~~~~~~diVi~ 95 (143)
T cd01483 81 DNLDDFLDGVDLVID 95 (143)
T ss_pred hhHHHHhcCCCEEEE
Confidence 2 23357899985
No 424
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=37.10 E-value=85 Score=30.99 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=56.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHh--cCCC-CeEEEEeCccccc--cC-CCCccEEEeccccccCCCC-C-hHHHHHHHhhcc
Q 039233 105 KIYAVEKNPNAVVTLHSLVRL--EGWE-KTVTIVSCDMRCW--DA-PEKADILVSELLGSFGDNE-L-SPECLDGAQRFL 176 (359)
Q Consensus 105 ~V~AVE~n~~a~~~a~~~~~~--n~~~-~~V~vi~~d~~~~--~~-p~k~DiIVSEllGs~~~~E-l-~~e~L~~a~r~L 176 (359)
.|.-+|.+.+.++..++-... .|++ .+|.+.-||--.+ .. ..++|+|+.|.-+-.|..+ + .........+.|
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aL 226 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDAL 226 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhh
Confidence 788999999888887776542 4554 4799999986654 12 4679999966544444333 2 222445567889
Q ss_pred CCCeEEEcccc
Q 039233 177 KQDGISIPSSY 187 (359)
Q Consensus 177 kp~Gi~IP~~~ 187 (359)
|+||+.+=+.-
T Consensus 227 k~dgv~~~q~e 237 (337)
T KOG1562|consen 227 KGDGVVCTQGE 237 (337)
T ss_pred CCCcEEEEecc
Confidence 99999775543
No 425
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=36.95 E-value=87 Score=32.04 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=48.8
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=+|+|. +++.|+..| .+|+++|.+|.-...|. ..|. +++ ++.+. -.++|++|+ ..|
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l~~aDVVIt-aTG-- 259 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--AKIGDIFIT-ATG-- 259 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--HhcCCEEEE-CCC--
Confidence 466678775 556666666 37999999985322222 2233 222 23332 247899986 233
Q ss_pred CCCCChHHHHHH-HhhccCCCeEEEcccc
Q 039233 160 GDNELSPECLDG-AQRFLKQDGISIPSSY 187 (359)
Q Consensus 160 ~~~El~~e~L~~-a~r~Lkp~Gi~IP~~~ 187 (359)
.+.++.. ....+|+|++++=.+-
T Consensus 260 -----~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 260 -----NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -----CHHHHHHHHHhcCCCCcEEEEECC
Confidence 3456654 4578899999875543
No 426
>PRK05854 short chain dehydrogenase; Provisional
Probab=36.92 E-value=1.5e+02 Score=28.35 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----------CCCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----------APEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----------~p~k~DiIVSE 154 (359)
++...++.| .+|+.+..|++..+.+.+.+....-+.+++++..|+.+.+ ...++|++|..
T Consensus 30 ~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 30 LARRLAAAG--AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 445455667 4788888887655544444443222346899999998863 12468999964
No 427
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.55 E-value=1.2e+02 Score=30.38 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=42.0
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCC-------------------HHHHHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKN-------------------PNAVVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n-------------------~~a~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
+|+=+|||- ++...+++|.+ +++-||-+ ..=++.+.+.+++.+-.-+|+.+.....
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~ 215 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT 215 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 577778874 56777889988 99999986 1223444555543222234555655544
Q ss_pred ccc---CCCCccEEEe
Q 039233 141 CWD---APEKADILVS 153 (359)
Q Consensus 141 ~~~---~p~k~DiIVS 153 (359)
+-. +-..+|+||.
T Consensus 216 ~~~~~~~~~~~D~Vv~ 231 (376)
T PRK08762 216 SDNVEALLQDVDVVVD 231 (376)
T ss_pred hHHHHHHHhCCCEEEE
Confidence 321 2257999995
No 428
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=36.47 E-value=1e+02 Score=30.87 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-cCCCCccEEEecccccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-DAPEKADILVSELLGSF 159 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~~p~k~DiIVSEllGs~ 159 (359)
|+=+|+|. .+..|.+.|+ +|+++|.++...+.+... ++..+.....+..++ +.-.++|+||+ ..+.-
T Consensus 170 VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~~-----~g~~v~~~~~~~~~l~~~l~~aDvVI~-a~~~~ 241 (370)
T TIGR00518 170 VTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDAE-----FGGRIHTRYSNAYEIEDAVKRADLLIG-AVLIP 241 (370)
T ss_pred EEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHh-----cCceeEeccCCHHHHHHHHccCCEEEE-ccccC
Confidence 55567776 3455566774 799999998654443322 222232221211111 11147899996 33211
Q ss_pred CCCCChHHHH-HHHhhccCCCeEEEc
Q 039233 160 GDNELSPECL-DGAQRFLKQDGISIP 184 (359)
Q Consensus 160 ~~~El~~e~L-~~a~r~Lkp~Gi~IP 184 (359)
+.. .|.++ ....+.+|+++++|=
T Consensus 242 g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 242 GAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 111 12222 222355788776553
No 429
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=35.96 E-value=1.3e+02 Score=27.38 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=41.2
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCC---HHH---------------HHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKN---PNA---------------VVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n---~~a---------------~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
.+|+=+|||. ++...+++|.+ +|+-+|.+ +.- ++.+++.+++-+-.-+|+.+..++.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIG-KLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCC-EEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 3678888875 66777889976 78888877 111 1223333333222345666666665
Q ss_pred cccC---CCCccEEEe
Q 039233 141 CWDA---PEKADILVS 153 (359)
Q Consensus 141 ~~~~---p~k~DiIVS 153 (359)
+-.+ -..+|+||.
T Consensus 101 ~~~~~~~~~~~DlVi~ 116 (200)
T TIGR02354 101 EENIDKFFKDADIVCE 116 (200)
T ss_pred HhHHHHHhcCCCEEEE
Confidence 4222 246899984
No 430
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=35.86 E-value=54 Score=30.66 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEEEeccccccCCCCCh
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADILVSELLGSFGDNELS 165 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiIVSEllGs~~~~El~ 165 (359)
+..+|...|.+ +|+++..++.-...++ .-+. -.++.....+ +.....+|+++. ..|.
T Consensus 145 ~~~la~~~g~~-~v~~~~~~~~~~~~~~----~~g~---~~~~~~~~~~~~~~l~~~~~~~~vd~vld-~~g~------- 208 (312)
T cd08269 145 FLQLAAAAGAR-RVIAIDRRPARLALAR----ELGA---TEVVTDDSEAIVERVRELTGGAGADVVIE-AVGH------- 208 (312)
T ss_pred HHHHHHHcCCc-EEEEECCCHHHHHHHH----HhCC---ceEecCCCcCHHHHHHHHcCCCCCCEEEE-CCCC-------
Confidence 45667777755 5999988775444322 2233 1233322111 222346899985 2321
Q ss_pred HHHHHHHhhccCCCeEEE
Q 039233 166 PECLDGAQRFLKQDGISI 183 (359)
Q Consensus 166 ~e~L~~a~r~Lkp~Gi~I 183 (359)
...+..+.+.|+++|.++
T Consensus 209 ~~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 209 QWPLDLAGELVAERGRLV 226 (312)
T ss_pred HHHHHHHHHHhccCCEEE
Confidence 235666778899999876
No 431
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=35.78 E-value=35 Score=34.55 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=25.2
Q ss_pred ccCCcC---ChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q 039233 83 DRVPDE---EASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR 124 (359)
Q Consensus 83 d~v~D~---g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~ 124 (359)
|+|+-| ||.+|+.++ ++++ +|+|||.||.=...++-+++
T Consensus 37 d~vl~ItSaG~N~L~yL~--~~P~-~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 37 DRVLTITSAGCNALDYLL--AGPK-RIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CeEEEEccCCchHHHHHh--cCCc-eEEEEeCCHHHHHHHHHHHH
Confidence 455443 555677754 4566 99999999965555554443
No 432
>PRK07411 hypothetical protein; Validated
Probab=35.50 E-value=1.4e+02 Score=30.23 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=45.2
Q ss_pred hhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEE
Q 039233 80 ALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 80 ~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi 135 (359)
.+++ +|+=+|||- ++...+++|.+ +++-||.+. .=++.|++.+++-+-.-+|+.+
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg-~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIG-RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 3443 688889875 56667788987 888888431 0122344444432334568888
Q ss_pred eCcccccc---CCCCccEEEe
Q 039233 136 SCDMRCWD---APEKADILVS 153 (359)
Q Consensus 136 ~~d~~~~~---~p~k~DiIVS 153 (359)
...+.... +-..+|+||.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd 134 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVD 134 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEE
Confidence 87776532 2357999995
No 433
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=35.09 E-value=1.1e+02 Score=33.54 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCcCChhH----HHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhc--------CC--------CCeEEEEeCcccccc
Q 039233 85 VPDEEASS----LTTAAE-ETGRKLKIYAVEKNPNAVVTLHSLVRLE--------GW--------EKTVTIVSCDMRCWD 143 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~-~aga~~~V~AVE~n~~a~~~a~~~~~~n--------~~--------~~~V~vi~~d~~~~~ 143 (359)
|.=+|+|+ ++..++ ++| ..|+.+|.++++++.+.+.++.. .. -.+|++. .|...
T Consensus 307 v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 381 (699)
T TIGR02440 307 VGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRG-- 381 (699)
T ss_pred EEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHH--
Confidence 34567776 444444 677 68999999999888877665321 11 1245543 33322
Q ss_pred CCCCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeecc
Q 039233 144 APEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVT 195 (359)
Q Consensus 144 ~p~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi~ 195 (359)
-..+|+|| |..- .+-++-.+++....+.++|+.++-=+..++-+.-+.
T Consensus 382 -~~~adlVi-Eav~--E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la 429 (699)
T TIGR02440 382 -FKDVDIVI-EAVF--EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIA 429 (699)
T ss_pred -hccCCEEE-Eecc--ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHH
Confidence 25789888 3221 122234567777788899998876555554444443
No 434
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=34.94 E-value=1.6e+02 Score=27.82 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=46.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc--cCCCCccEEEecccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW--DAPEKADILVSELLG 157 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~--~~p~k~DiIVSEllG 157 (359)
.|+-.|+|. +..+|...| .+|+++..++...+.+++ .+... ++..+-.+. ...+.+|+++. ..|
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~d~vi~-~~~ 234 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK----LGADE---VVDSGAELDEQAAAGGADVILV-TVV 234 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hCCcE---EeccCCcchHHhccCCCCEEEE-CCC
Confidence 455557765 345556666 479999988866555432 23221 121111111 02346899884 333
Q ss_pred ccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 158 SFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 158 s~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+ .+.+..+.+.|+++|.++
T Consensus 235 ~-------~~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 235 S-------GAAAEAALGGLRRGGRIV 253 (330)
T ss_pred c-------HHHHHHHHHhcccCCEEE
Confidence 2 235667778899998865
No 435
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=34.87 E-value=2.5e+02 Score=27.04 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=43.1
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHH-------------------HHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNA-------------------VVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a-------------------~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
+|+=+|+|- ++.+.+++|.+ +++-||.+... ++.+++.+..-+..-+|+.+..-..
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~ 110 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFIT 110 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccC
Confidence 577788864 67778899987 99999965210 1133444443334456777654332
Q ss_pred cc----cCCCCccEEEeccccc
Q 039233 141 CW----DAPEKADILVSELLGS 158 (359)
Q Consensus 141 ~~----~~p~k~DiIVSEllGs 158 (359)
.- .+..++|+||. .+|+
T Consensus 111 ~e~~~~ll~~~~D~VId-aiD~ 131 (268)
T PRK15116 111 PDNVAEYMSAGFSYVID-AIDS 131 (268)
T ss_pred hhhHHHHhcCCCCEEEE-cCCC
Confidence 11 12346899985 4554
No 436
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=34.86 E-value=56 Score=31.34 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=47.1
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc----cCCCCccEEEec
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW----DAPEKADILVSE 154 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~----~~p~k~DiIVSE 154 (359)
+.|+=.|+|. +..+|...|+ +|++++.++.-...+++ .|. + .++...-.++ .-...+|+++.
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~--~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~- 234 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGF--RTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQELGGAKLILA- 234 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHhcCCCCEEEE-
Confidence 3455556665 3455666663 79999998765555543 232 2 1222221111 10135898884
Q ss_pred cccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 155 LLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 155 llGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
..| ..+.+..+.+.|+++|.++
T Consensus 235 ~~g-------~~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 235 TAP-------NAKAISALVGGLAPRGKLL 256 (333)
T ss_pred CCC-------chHHHHHHHHHcccCCEEE
Confidence 232 2346777788899999866
No 437
>PRK04143 hypothetical protein; Provisional
Probab=34.63 E-value=50 Score=31.75 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCeEEEEeCccccccCCCCccEEEe----ccccccC
Q 039233 129 EKTVTIVSCDMRCWDAPEKADILVS----ELLGSFG 160 (359)
Q Consensus 129 ~~~V~vi~~d~~~~~~p~k~DiIVS----EllGs~~ 160 (359)
+.+|.+++||++++ ++|.||. .++|+|+
T Consensus 82 ~~~i~i~~GDIt~l----~vDAIVNAANs~L~g~~~ 113 (264)
T PRK04143 82 YDNIFLWQGDITRL----KVDAIVNAANSRLLGCFQ 113 (264)
T ss_pred CCEEEEEECCccee----ecCEEEeCcccccccCCC
Confidence 36899999999986 6899994 6676654
No 438
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=34.57 E-value=1.6e+02 Score=28.73 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=46.0
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-cCCCCccEEEeccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-DAPEKADILVSELLGS 158 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-~~p~k~DiIVSEllGs 158 (359)
+|+-.|+|. ...+|+..|+ +|+++..+++....+. +..|. + ..+...+-..+ .....+|+++ |..|.
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G~--~vi~~~~~~~~~~~~~---~~~Ga-~-~~i~~~~~~~~~~~~~~~D~vi-d~~g~ 254 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMGH--HVTVISSSDKKREEAL---EHLGA-D-DYLVSSDAAEMQEAADSLDYII-DTVPV 254 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHH---HhcCC-c-EEecCCChHHHHHhcCCCcEEE-ECCCc
Confidence 444447765 3455666673 6888888775433332 22333 2 12222221111 1113589887 34442
Q ss_pred cCCCCChHHHHHHHhhccCCCeEEEc
Q 039233 159 FGDNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 159 ~~~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
...+..+.+.|+++|.++=
T Consensus 255 -------~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 255 -------FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred -------hHHHHHHHHHhccCCEEEE
Confidence 3466677788999998763
No 439
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=33.92 E-value=57 Score=31.19 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc-------cCCCCccEEE
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW-------DAPEKADILV 152 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~-------~~p~k~DiIV 152 (359)
.|+=.|+|. +..+|...|.. +|++++.++.-...+++ -|. .++..+..++ ...+.+|+++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~~~dvvi 240 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLGAA-RVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGRGADVVL 240 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCc-eEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCCCCCEEE
Confidence 343346665 34566667754 89999887754444333 222 1233332221 2225689998
Q ss_pred eccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 153 SELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 153 SEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
. ..| ..+.+..+.+.|+++|.+|
T Consensus 241 d-~~~-------~~~~~~~~~~~l~~~g~~v 263 (344)
T cd08284 241 E-AVG-------GAAALDLAFDLVRPGGVIS 263 (344)
T ss_pred E-CCC-------CHHHHHHHHHhcccCCEEE
Confidence 4 222 1346667778889999876
No 440
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.89 E-value=1.1e+02 Score=28.29 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=39.7
Q ss_pred cCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 87 DEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 87 D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
=+|+|. ++....+.| ..|.+||.+++.+..... . ....+++++|..+-+ .-+.+|++|.
T Consensus 5 IiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~---~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 5 IIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLA---D---ELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhh---h---hcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 368876 555555555 489999999976544211 1 123889999998854 2468999986
No 441
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=33.62 E-value=98 Score=30.49 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCCeEE---EEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCCCC
Q 039233 93 LTTAAEETGRKLKIY---AVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNE 163 (359)
Q Consensus 93 l~~~A~~aga~~~V~---AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~E 163 (359)
|+.+|++.|-+++|. +.|.++..++.|+++.+.+ +.+|++.+---+-+ .-+|+|.+..-.|+|++.
T Consensus 169 l~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~--g~~i~~t~d~~eAv---~gADvvyTDvWvSMGee~ 237 (310)
T COG0078 169 LLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKES--GGKITLTEDPEEAV---KGADVVYTDVWVSMGEEA 237 (310)
T ss_pred HHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc--CCeEEEecCHHHHh---CCCCEEEecCcccCcchh
Confidence 788999999775554 3677899999999988775 55677664322222 468999999888888544
No 442
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.39 E-value=1.5e+02 Score=24.82 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----------CCCCccEEEe
Q 039233 93 LTTAAEETGRKLKIYAVEKN--PNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----------APEKADILVS 153 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n--~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----------~p~k~DiIVS 153 (359)
++...++.|++ +|+.+..+ ......+.+.++. -+.++++++.|+.+.+ ...+.|++|.
T Consensus 16 ~a~~l~~~g~~-~v~~~~r~~~~~~~~~l~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~ 86 (167)
T PF00106_consen 16 LARALARRGAR-VVILTSRSEDSEGAQELIQELKA--PGAKITFIECDLSDPESIRALIEEVIKRFGPLDILIN 86 (167)
T ss_dssp HHHHHHHTTTE-EEEEEESSCHHHHHHHHHHHHHH--TTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEE
T ss_pred HHHHHHhcCce-EEEEeeecccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 55555566766 99999998 3334444444443 3378999999988763 1247899996
No 443
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=33.39 E-value=1.8e+02 Score=27.20 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=43.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
-+|+=+|+|. ++...+++|.. +++-||.+. .=++.+++++++-+-.-+|+.+...+
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 4678888874 56677889987 899888542 01223344444322334577777665
Q ss_pred cccc----CCCCccEEEeccccc
Q 039233 140 RCWD----APEKADILVSELLGS 158 (359)
Q Consensus 140 ~~~~----~p~k~DiIVSEllGs 158 (359)
..-. +..++|+||. .+++
T Consensus 91 ~~~~~~~l~~~~~D~Vvd-aiD~ 112 (231)
T cd00755 91 TPDNSEDLLGGDPDFVVD-AIDS 112 (231)
T ss_pred CHhHHHHHhcCCCCEEEE-cCCC
Confidence 5211 2346999986 3444
No 444
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=33.14 E-value=2.3e+02 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=43.3
Q ss_pred Hhhcc-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEE
Q 039233 79 NALVD-RVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTI 134 (359)
Q Consensus 79 ~~~~d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~v 134 (359)
+.+++ +|+=+|||- ++...+++|.+ +++-||-+. .=++.|++.+++-+-.-+|+.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~ 116 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVG-TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL 116 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence 34443 688889875 55666788987 888888331 012234444443223345777
Q ss_pred EeCcccccc---CCCCccEEEe
Q 039233 135 VSCDMRCWD---APEKADILVS 153 (359)
Q Consensus 135 i~~d~~~~~---~p~k~DiIVS 153 (359)
+..++..-. +-..+|+||.
T Consensus 117 ~~~~i~~~~~~~~~~~~D~Vvd 138 (392)
T PRK07878 117 HEFRLDPSNAVELFSQYDLILD 138 (392)
T ss_pred EeccCChhHHHHHHhcCCEEEE
Confidence 777665422 2257999995
No 445
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.92 E-value=78 Score=33.34 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=40.8
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
+.++=+|+|. ++....+.| ..|++||+|++.++.+++ . ...++.||..+-+ .-+++|.++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE----R----GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4455578876 333334444 589999999987666553 1 2789999999853 1258897664
No 446
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=32.80 E-value=49 Score=31.34 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc------cCCCCccEEEeccccccCCCCChH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW------DAPEKADILVSELLGSFGDNELSP 166 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~------~~p~k~DiIVSEllGs~~~~El~~ 166 (359)
+..+|+..|+ +|+++..+++-.+.+++ .|... ++..+-.++ ..+..+|+|+. ..|.
T Consensus 160 aiqlA~~~G~--~vi~~~~s~~~~~~l~~----~Ga~~---vi~~~~~~~~~~v~~~~~~gvd~vld-~~g~-------- 221 (329)
T cd08294 160 VGQIAKIKGC--KVIGCAGSDDKVAWLKE----LGFDA---VFNYKTVSLEEALKEAAPDGIDCYFD-NVGG-------- 221 (329)
T ss_pred HHHHHHHcCC--EEEEEeCCHHHHHHHHH----cCCCE---EEeCCCccHHHHHHHHCCCCcEEEEE-CCCH--------
Confidence 4466677774 79999988865555543 33322 232221111 01346898883 4441
Q ss_pred HHHHHHhhccCCCeEEE
Q 039233 167 ECLDGAQRFLKQDGISI 183 (359)
Q Consensus 167 e~L~~a~r~Lkp~Gi~I 183 (359)
+.+..+.+.|+++|.++
T Consensus 222 ~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 222 EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred HHHHHHHHhhccCCEEE
Confidence 35566778899999976
No 447
>PRK06914 short chain dehydrogenase; Provisional
Probab=32.57 E-value=1.5e+02 Score=27.37 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~----------p~k~DiIVSE 154 (359)
++...++.| .+|+++..+++....+.+..+..+.+.+++++.+|+.+.+. -.++|+||.-
T Consensus 19 la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~vv~~ 88 (280)
T PRK06914 19 TTLELAKKG--YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRIDLLVNN 88 (280)
T ss_pred HHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCeeEEEEC
Confidence 444445556 48999998887665555444443445679999999988531 1367999863
No 448
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=32.38 E-value=1.4e+02 Score=29.57 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCeEEEEe-Cccccc-cCCCCccEEEecc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNPNA-VVTLHSLVRLEGWEKTVTIVS-CDMRCW-DAPEKADILVSEL 155 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a-~~~a~~~~~~n~~~~~V~vi~-~d~~~~-~~p~k~DiIVSEl 155 (359)
++|+-.|+|. +..+|+..|+ +|++++.+++. .+.+ +..|... ++. .+...+ +....+|+++ |.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga--~Vi~~~~~~~~~~~~a----~~lGa~~---~i~~~~~~~v~~~~~~~D~vi-d~ 249 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGL--RVTVISRSSEKEREAI----DRLGADS---FLVTTDSQKMKEAVGTMDFII-DT 249 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCC--eEEEEeCChHHhHHHH----HhCCCcE---EEcCcCHHHHHHhhCCCcEEE-EC
Confidence 4566567776 3455666774 68999887542 2222 2233321 221 111111 1112589888 34
Q ss_pred ccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 156 LGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 156 lGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
.| .++.+..+.+.|+++|.++
T Consensus 250 ~G-------~~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 250 VS-------AEHALLPLFSLLKVSGKLV 270 (375)
T ss_pred CC-------cHHHHHHHHHhhcCCCEEE
Confidence 44 2346677778899999876
No 449
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=32.35 E-value=66 Score=30.28 Aligned_cols=104 Identities=24% Similarity=0.332 Sum_probs=60.8
Q ss_pred hhhcccccccCCCCCCCCCceeec---ccch--hh-hcccccCCC---CCccccCcHHHHHHHhcCcccHHHHHHHHHHh
Q 039233 10 FELSYRDFLQSPLQGHNPLFHIIS---DEFC--TI-EFSNYYLSF---QPLMDNLEAQTYETFEKDSVKYIQYQRAIGNA 80 (359)
Q Consensus 10 ~~~~y~d~lq~pl~~~~~~~~~~~---~~~~--~~-~~~~~~~~~---qPl~dnL~s~~Ye~f~~D~vry~~Y~~AI~~~ 80 (359)
-.+||++..=.|| |||- +|.- ++ .|++.--+. |||-.- -+ .|+..-+||..-
T Consensus 70 k~~gy~eviiQ~l-------hiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~---------k~---DYe~~v~aik~~ 130 (265)
T COG4822 70 KDQGYEEVIIQPL-------HIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYY---------KN---DYEICVEAIKDQ 130 (265)
T ss_pred HHccchheeeeee-------eecCchHHHHHHHHHHHHhhhhheeecCCceeec---------hh---hHHHHHHHHHHh
Confidence 4579999999999 8743 2221 11 222221111 787651 12 356666677665
Q ss_pred hc----c-cCCcCChhH----------H--HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Q 039233 81 LV----D-RVPDEEASS----------L--TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIV 135 (359)
Q Consensus 81 ~~----d-~v~D~g~Gt----------l--~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi 135 (359)
+. + .+.=.|-|| | ++-+...+ .+.|-|+|.-|. ++..-+.+++|+... |+++
T Consensus 131 ~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~-~v~v~~ve~yP~-~d~vi~~l~~~~~~~-v~L~ 199 (265)
T COG4822 131 IPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFD-NVFVAAVEGYPL-VDTVIEYLRKNGIKE-VHLI 199 (265)
T ss_pred cCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCC-ceEEEEecCCCc-HHHHHHHHHHcCCce-EEEe
Confidence 53 2 234456665 1 12223333 458999999996 567777888888866 6654
No 450
>PRK06194 hypothetical protein; Provisional
Probab=32.24 E-value=2e+02 Score=26.72 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|++++.++.....+.+.+.. .+.+++++.+|+.+.+- -.++|+||..
T Consensus 22 la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~ 90 (287)
T PRK06194 22 FARIGAALG--MKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNN 90 (287)
T ss_pred HHHHHHHCC--CEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 555555667 4789999887654444333332 24568999999987531 1358999973
No 451
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=32.21 E-value=53 Score=32.64 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=25.1
Q ss_pred CccEEEeccccccC-CCCChHHHHHHHhhccCCCeEEEc
Q 039233 147 KADILVSELLGSFG-DNELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 147 k~DiIVSEllGs~~-~~El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
.+|+||.- .|- ..+-+.|-|+...+.|||||+.|=
T Consensus 259 ~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 259 SYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 47888853 222 223467888999999999999764
No 452
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=32.04 E-value=1.3e+02 Score=31.06 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=47.0
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=+|+|. ++..+...|+ +|+++|.++.....|. ..|. +++ ++.+. -+.+|+||. ..|
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~----~~G~----~v~--~l~ea--l~~aDVVI~-aTG-- 276 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA----MDGF----RVM--TMEEA--AELGDIFVT-ATG-- 276 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH----hcCC----Eec--CHHHH--HhCCCEEEE-CCC--
Confidence 466778776 4555666674 8999999985432221 1232 222 33333 247899986 223
Q ss_pred CCCCChHHHHHH-HhhccCCCeEEEc
Q 039233 160 GDNELSPECLDG-AQRFLKQDGISIP 184 (359)
Q Consensus 160 ~~~El~~e~L~~-a~r~Lkp~Gi~IP 184 (359)
.+.++.. ..+.+|+|++++=
T Consensus 277 -----~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 277 -----NKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred -----CHHHHHHHHHhcCCCCCEEEE
Confidence 2446764 4578899998653
No 453
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=31.97 E-value=1.6e+02 Score=26.92 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----------CCCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----------APEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----------~p~k~DiIVSE 154 (359)
++...++.| .+|+.+..++.....+.+.++.. .++..+.+|+.+.+ ...++|++|..
T Consensus 16 ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~n 83 (259)
T PRK08340 16 VARELLKKG--ARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWN 83 (259)
T ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 555555667 47999999987665555555432 25889999998743 12478999964
No 454
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.91 E-value=81 Score=31.12 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=51.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh-------cCC-----CCeEEEEeCccccccCCCC
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRL-------EGW-----EKTVTIVSCDMRCWDAPEK 147 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~-------n~~-----~~~V~vi~~d~~~~~~p~k 147 (359)
+|.=+|+|+ ++..++.+| ..|+..|.++++...+++.++. .++ ..+|++.. +..+ .-..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--av~~ 83 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--CVAD 83 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH--HhcC
Confidence 345568887 444455666 6999999999888776665432 111 12344332 2221 2257
Q ss_pred ccEEEeccccccCCCC-ChHHHHHHHhhccCCCeEE
Q 039233 148 ADILVSELLGSFGDNE-LSPECLDGAQRFLKQDGIS 182 (359)
Q Consensus 148 ~DiIVSEllGs~~~~E-l~~e~L~~a~r~Lkp~Gi~ 182 (359)
+|+|+- .+ -++. .-.+++....+.++|+.++
T Consensus 84 aDlViE-av---pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 84 ADFIQE-SA---PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred CCEEEE-CC---cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 898883 21 1121 2334566677888888743
No 455
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=31.63 E-value=2.6e+02 Score=24.52 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccc
Q 039233 146 EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSS 186 (359)
Q Consensus 146 ~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~ 186 (359)
..+|++|+ | .++.++.....||+||++|=++
T Consensus 66 ~~~D~lva--l--------~~~~~~~~~~~l~~~g~vi~n~ 96 (177)
T PRK08537 66 ISPDILVA--M--------SQEAYDKYLDDLKEGGTVIVDP 96 (177)
T ss_pred CCCCEEEE--e--------CHHHHHHHHhccCCCeEEEEEC
Confidence 57899996 2 2445555556799999988654
No 456
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=31.30 E-value=45 Score=36.87 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q 039233 88 EEASSLTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR 124 (359)
Q Consensus 88 ~g~Gtl~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~ 124 (359)
.|-|+|..-|+|.| ..|+|||.||.|+..+++.+.
T Consensus 99 AG~GSIPlEAlRLG--~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 99 AGGGSIPLEALRLG--LEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCCccchHHHhcC--ceeEEEecccHHHHHHHHHHh
Confidence 47788999999999 489999999999999888765
No 457
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=30.08 E-value=54 Score=31.11 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.4
Q ss_pred ccCCcCChhH--HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc
Q 039233 83 DRVPDEEASS--LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD 143 (359)
Q Consensus 83 d~v~D~g~Gt--l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~ 143 (359)
+.|..+|.|- +...-..||+. +...||+++--+..++...++ -..+..+.++|+-.++
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~-RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVA-RLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDVLRFK 111 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchh-heeeeeeccccChHHHHHhhc--CCcceEEeccccceeh
Confidence 5677777654 77777788877 999999998877777776554 3457889999987765
No 458
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=30.06 E-value=1.8e+02 Score=30.26 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=45.9
Q ss_pred CChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCCCccEEEeccccccCCC
Q 039233 88 EEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APEKADILVSELLGSFGDN 162 (359)
Q Consensus 88 ~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEllGs~~~~ 162 (359)
+|.|. ++...++.| .+|++.+.+++.++.+.+.....+. .++ ...+..++- --+++|+|+.=+. ..
T Consensus 7 IGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l~~~d~Iil~v~----~~ 77 (470)
T PTZ00142 7 IGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSLKKPRKVILLIK----AG 77 (470)
T ss_pred EeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcCCCCCEEEEEeC----Ch
Confidence 46665 444455666 5899999999877666554332232 122 223444431 1135686663111 22
Q ss_pred CChHHHHHHHhhccCCCeEEEc
Q 039233 163 ELSPECLDGAQRFLKQDGISIP 184 (359)
Q Consensus 163 El~~e~L~~a~r~Lkp~Gi~IP 184 (359)
+...++++.....|++|-++|=
T Consensus 78 ~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred HHHHHHHHHHHhhCCCCCEEEE
Confidence 2344556555566776655443
No 459
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=3.8e+02 Score=24.76 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHH-HHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCCCCCh---HHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPN-AVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNELS---PEC 168 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~-a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~El~---~e~ 168 (359)
.++.+...|..+.|+++...+. -.+.++.+.+.-+....+++.. .++ .++++|+||==++|..+-.++- ...
T Consensus 68 aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~--~~~--~~~~~dvIVDalfG~G~~g~lrep~a~~ 143 (203)
T COG0062 68 AARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKE--LED--EPESADVIVDALFGTGLSGPLREPFASL 143 (203)
T ss_pred HHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecc--ccc--ccccCCEEEEeceecCCCCCCccHHHHH
Confidence 5677777888889999886542 2344454433222212222222 111 5678999998889986644432 234
Q ss_pred HHHHhhccCC-CeEEEccccce
Q 039233 169 LDGAQRFLKQ-DGISIPSSYTS 189 (359)
Q Consensus 169 L~~a~r~Lkp-~Gi~IP~~~t~ 189 (359)
++.+.+.-+| =.+=||+....
T Consensus 144 Ie~iN~~~~pivAVDiPSGl~~ 165 (203)
T COG0062 144 IEAINASGKPIVAVDIPSGLDA 165 (203)
T ss_pred HHHHHhcCCceEEEeCCCCcCC
Confidence 4554433333 13456665543
No 460
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=29.66 E-value=2.2e+02 Score=27.07 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=48.4
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcc----------ccccCCCCcc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDM----------RCWDAPEKAD 149 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~----------~~~~~p~k~D 149 (359)
.|+=.|+|. +...|...|++ .|++++.++.....+++. +. + .++..+- ......+.+|
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G~~-~v~~~~~~~~~~~~~~~~----g~-~--~~i~~~~~~~~~~~~~~~~~~~~~~~d 235 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARGVG-PIVASDFSPERRALALAM----GA-D--IVVDPAADSPFAAWAAELARAGGPKPA 235 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHHc----CC-c--EEEcCCCcCHHHHHHHHHHHhCCCCCC
Confidence 444346655 34566778876 799999988766655432 22 1 2222111 1112235699
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+++. ..|+ ...+..+.+.|+++|.++
T Consensus 236 ~vid-~~g~-------~~~~~~~~~~l~~~g~~v 261 (341)
T cd08262 236 VIFE-CVGA-------PGLIQQIIEGAPPGGRIV 261 (341)
T ss_pred EEEE-CCCC-------HHHHHHHHHHhccCCEEE
Confidence 9984 3442 135566677889999876
No 461
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=29.53 E-value=1.5e+02 Score=27.75 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=42.5
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHH-------------------HHHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPN-------------------AVVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~-------------------a~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
+|+=+|+|- ++...+++|.+ +++.||.+.- =++.|++.+++-+-.-+|+.+...+.
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~ 104 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVG-NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLD 104 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence 678888864 56777889987 8888874321 12334444443333445777776655
Q ss_pred ccc---CCCCccEEEe
Q 039233 141 CWD---APEKADILVS 153 (359)
Q Consensus 141 ~~~---~p~k~DiIVS 153 (359)
+-. +-..+|+||.
T Consensus 105 ~~~~~~~~~~~DlVvd 120 (240)
T TIGR02355 105 DAELAALIAEHDIVVD 120 (240)
T ss_pred HHHHHHHhhcCCEEEE
Confidence 421 2357999995
No 462
>PRK09291 short chain dehydrogenase; Provisional
Probab=29.18 E-value=2.1e+02 Score=25.92 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVSE 154 (359)
++...++.| .+|+++..++.....+++..+. .+.++.++.+|+.+.+ ...++|++|..
T Consensus 18 ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 18 VALRLARKG--HNVIAGVQIAPQVTALRAEAAR--RGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 455555666 4888988887655444444433 2345899999998753 22479999963
No 463
>PRK07102 short chain dehydrogenase; Provisional
Probab=29.13 E-value=2.1e+02 Score=25.79 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC--------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA--------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~--------p~k~DiIVSE 154 (359)
++...++.| .+|++++.++.....+.+.++.. -+.+++++.+|+.+... .+++|++|..
T Consensus 17 ~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ 83 (243)
T PRK07102 17 CARRYAAAG--ARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPALPDIVLIA 83 (243)
T ss_pred HHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEEC
Confidence 444445556 48999999886554444444332 34579999999998631 2357999963
No 464
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=29.00 E-value=97 Score=31.20 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHcCCCCeEEEEeCCHHHH-------HHHHHHHHhcCCCCeEEEEeCcccc-----ccCCCCccEEEe-ccccccC
Q 039233 96 AAEETGRKLKIYAVEKNPNAV-------VTLHSLVRLEGWEKTVTIVSCDMRC-----WDAPEKADILVS-ELLGSFG 160 (359)
Q Consensus 96 ~A~~aga~~~V~AVE~n~~a~-------~~a~~~~~~n~~~~~V~vi~~d~~~-----~~~p~k~DiIVS-EllGs~~ 160 (359)
.|.+.+.+ +|++|+|+..+- +++++..+ .+.+ |++-+.-+.. +.-|+++|+||+ ++.|.++
T Consensus 180 ~A~~r~rk-kVt~v~KaNvl~~t~glf~~~~~eva~--eyPd-V~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDIL 253 (360)
T PLN00123 180 YAYLNNRK-KVTAVHKANIMKLADGLFLESCREVAK--KYPG-IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 253 (360)
T ss_pred HHHhcCCC-cEEEEECCccccchhhHHHHHHHHHHh--hCCC-ceEeeeeHHHHHHHHhhCcccCcEEEEcCcccchh
Confidence 34344445 899999965332 22333322 2444 4443332222 245899999996 4556544
No 465
>PRK09242 tropinone reductase; Provisional
Probab=28.97 E-value=2.8e+02 Score=25.19 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----------CCCCccEEEe
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----------APEKADILVS 153 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----------~p~k~DiIVS 153 (359)
++...++.| .+|+++..+++..+.+.+.++....+.++..+.+|+.+.+ .-.+.|+||.
T Consensus 25 ~a~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~ 94 (257)
T PRK09242 25 IAREFLGLG--ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILVN 94 (257)
T ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 454455566 4799999988766655555543322467999999998742 1246899986
No 466
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=28.76 E-value=1e+02 Score=28.08 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=36.5
Q ss_pred CCCeEEEEeCcc--ccccCCCCccEEEe----ccccccC---------CCCChHHHHHHHh--hccCCCeE------EEc
Q 039233 128 WEKTVTIVSCDM--RCWDAPEKADILVS----ELLGSFG---------DNELSPECLDGAQ--RFLKQDGI------SIP 184 (359)
Q Consensus 128 ~~~~V~vi~~d~--~~~~~p~k~DiIVS----EllGs~~---------~~El~~e~L~~a~--r~Lkp~Gi------~IP 184 (359)
.+.++.++++|+ .+ .++|.||. .+.+..| ..|+..||-.... ..++.|+. -+|
T Consensus 16 ~~~~i~i~~gDI~~t~----~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~Lp 91 (186)
T cd02904 16 LGQKLSLVQSDISIGS----IDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGLP 91 (186)
T ss_pred CCCEEEEEECCccccc----eeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCCC
Confidence 567899999999 54 37999993 3333322 3334444433221 23555554 357
Q ss_pred cccceeee-ec
Q 039233 185 SSYTSFIQ-PV 194 (359)
Q Consensus 185 ~~~t~~~~-pi 194 (359)
.++.+|.. |.
T Consensus 92 ~k~VIHtVgP~ 102 (186)
T cd02904 92 AKFVIHCHSPQ 102 (186)
T ss_pred CCEEEEeCCCC
Confidence 77777653 44
No 467
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=28.70 E-value=73 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH----hcC--------CCCeEEEEeCccccccC----------CCCccE
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVR----LEG--------WEKTVTIVSCDMRCWDA----------PEKADI 150 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~----~n~--------~~~~V~vi~~d~~~~~~----------p~k~Di 150 (359)
|..+.++.... +||++-.+.+.. .+++++. ..+ ..+||+++.||+.+-.+ .+++|+
T Consensus 13 l~~Ll~~~~~~-~I~cLvR~~~~~-~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~~~~L~~~v~~ 90 (249)
T PF07993_consen 13 LEELLRQPPDV-KIYCLVRASSSQ-SALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDEDYQELAEEVDV 90 (249)
T ss_dssp HHHHHHHS-TT-EEEEEE-SSSHH-HHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--E
T ss_pred HHHHHcCCCCc-EEEEEEeCcccc-cchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHHhhccccccce
Confidence 34555554323 999998876432 3334432 111 26789999999998432 257999
Q ss_pred EEe
Q 039233 151 LVS 153 (359)
Q Consensus 151 IVS 153 (359)
||.
T Consensus 91 IiH 93 (249)
T PF07993_consen 91 IIH 93 (249)
T ss_dssp EEE
T ss_pred eee
Confidence 995
No 468
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=28.42 E-value=81 Score=31.53 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=33.9
Q ss_pred HHHHHcCCCCeEEEEeCCHHH-------HHHHHHHHHhcCCCCeEEEEeC--cccc---ccCCCCccEEEe-ccccccC
Q 039233 95 TAAEETGRKLKIYAVEKNPNA-------VVTLHSLVRLEGWEKTVTIVSC--DMRC---WDAPEKADILVS-ELLGSFG 160 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~a-------~~~a~~~~~~n~~~~~V~vi~~--d~~~---~~~p~k~DiIVS-EllGs~~ 160 (359)
..|.+.+.+ +|++|+|..-+ .+++++..+ .+.+ |++-+. |..- +.-|+++|+||+ ++.|..+
T Consensus 171 ~~A~~r~~k-~Vt~v~KaNvl~~t~glf~~~~~eva~--~ypd-V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDIL 245 (344)
T PRK03437 171 ERAQKRPRK-HLTLVHKTNVLTFAGDLWQRTVDEVAA--EYPD-VTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDII 245 (344)
T ss_pred HHHHhCCCC-eEEEEECCccccccchHHHHHHHHHHh--hCCC-ceEeehhHHHHHHHHhcCcccCcEEEEcccchhhh
Confidence 344555555 89999996422 122333322 3554 544333 2222 245899999996 4556543
No 469
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=28.41 E-value=3.3e+02 Score=26.10 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhhc---c-cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccc
Q 039233 69 KYIQYQRAIGNALV---D-RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMR 140 (359)
Q Consensus 69 ry~~Y~~AI~~~~~---d-~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~ 140 (359)
-+..+.+++.+... . +|+=+|+|- ++.++++.|++ +|+-++.+++-++.+.+.+.. .+.. +.+..-+
T Consensus 110 D~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~-~I~I~nR~~~ka~~la~~l~~-~~~~-~~~~~~~-- 184 (284)
T PRK12549 110 DWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVE-RLTIFDVDPARAAALADELNA-RFPA-ARATAGS-- 184 (284)
T ss_pred CHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHHHHh-hCCC-eEEEecc--
Confidence 45556677765432 2 467788874 44555677877 899999987655444443322 1322 3333221
Q ss_pred cc-cCCCCccEEEecc
Q 039233 141 CW-DAPEKADILVSEL 155 (359)
Q Consensus 141 ~~-~~p~k~DiIVSEl 155 (359)
++ +....+|+||.-+
T Consensus 185 ~~~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DLAAALAAADGLVHAT 200 (284)
T ss_pred chHhhhCCCCEEEECC
Confidence 11 1224689999754
No 470
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.37 E-value=2e+02 Score=25.80 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++....+.| .+|+++..+++....+.+.++. .+.++.++.+|+.+.+. -.++|+||..
T Consensus 23 la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 91 (250)
T PRK12939 23 FAEALAEAG--ATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNN 91 (250)
T ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 555555566 4788889887655544444432 34579999999987531 1468999963
No 471
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.32 E-value=1e+02 Score=32.36 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHhcCcccHHHHHHHHHHhh-------c-c---cCCcCChhHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHHHHHh
Q 039233 58 QTYETFEKDSVKYIQYQRAIGNAL-------V-D---RVPDEEASSLTTAAEETGRKLKIYAVEKNPN-AVVTLHSLVRL 125 (359)
Q Consensus 58 ~~Ye~f~~D~vry~~Y~~AI~~~~-------~-d---~v~D~g~Gtl~~~A~~aga~~~V~AVE~n~~-a~~~a~~~~~~ 125 (359)
.+=|.|.+|.. .|.+.+..+. . + .|+|..+|.=..||+-.... |+..-.-|. ...++.-+..
T Consensus 334 ~~~e~F~~Dt~---~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIyd- 407 (506)
T PF03141_consen 334 ISPEEFKEDTK---HWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYD- 407 (506)
T ss_pred CCHHHHHHHHH---HHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhh-
Confidence 45678888844 3555555432 1 1 37888877655666555433 443332221 1122222222
Q ss_pred cCCCCeEEEEeCcccccc-CCCCccEEEeccc-cccCCCCChHHHHHHHhhccCCCeEEEccccce
Q 039233 126 EGWEKTVTIVSCDMRCWD-APEKADILVSELL-GSFGDNELSPECLDGAQRFLKQDGISIPSSYTS 189 (359)
Q Consensus 126 n~~~~~V~vi~~d~~~~~-~p~k~DiIVSEll-Gs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~ 189 (359)
-|+ |=+.|-=.+-+. -|..+|+|=+.-+ +.....-.+..+|...+|.|+|+|.+|=..-..
T Consensus 408 RGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~ 470 (506)
T PF03141_consen 408 RGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD 470 (506)
T ss_pred ccc---chhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence 233 333443333333 3678888875433 222233346678888999999999987654433
No 472
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=28.09 E-value=2.8e+02 Score=29.55 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=43.8
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEeccccccCCCCChHHHHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSFGDNELSPECLDGA 172 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~~~~El~~e~L~~a 172 (359)
|+.+|.+.| ..|.+.+.-.... + |=.....+.-+|-.-..+.+.+|++|+ + .++.+...
T Consensus 21 La~aa~~~G--~~v~~~~~ygse~-----R----GG~~~s~vris~~pI~sp~~~~Dilva--l--------~~~~~~~~ 79 (562)
T TIGR03710 21 LAKALARAG--YYVFTYRDYPSRI-----R----GGHSYFQIRISDEPVRSPGDRVDVLVA--L--------DPETLEEH 79 (562)
T ss_pred HHHHHHHcC--CCEEEeecCChhh-----c----CCeeEEEEEEcCCcCCCCCCCCcEEEE--c--------CHHHHHHH
Confidence 567777777 4788888755211 1 223335555555211223378999996 2 24445444
Q ss_pred hhccCCCeEEEccc
Q 039233 173 QRFLKQDGISIPSS 186 (359)
Q Consensus 173 ~r~Lkp~Gi~IP~~ 186 (359)
...|||||++|=++
T Consensus 80 ~~~lk~gg~vI~ns 93 (562)
T TIGR03710 80 LDELRPGGIIIYDS 93 (562)
T ss_pred hcccCCCeEEEEEC
Confidence 67799999987554
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.08 E-value=2.9e+02 Score=27.77 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-----CCCCccEEEe
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-----APEKADILVS 153 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-----~p~k~DiIVS 153 (359)
++=+|+|. ++....+.| ..|+++|.|++.+..+++. ..+.++.||..+.. ..+++|.+|+
T Consensus 3 viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 3 IIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 34457776 333333444 4899999999765544331 13888999987642 1367998886
No 474
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.91 E-value=1.8e+02 Score=26.04 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+++..++.-...+...+.. +.++.++.+|+.+.+. -.++|+||..
T Consensus 21 l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 88 (251)
T PRK07231 21 IARRFAAEG--ARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFGSVDILVNN 88 (251)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 455455566 4799999998655444443332 4679999999987531 1368999973
No 475
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=27.78 E-value=1.2e+02 Score=30.25 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=33.8
Q ss_pred HHHHHcCCCCeEEEEeCCHHHH-------HHHHHHHHhcCCCCeEEEEe--Ccccc---ccCCCCccEEEe-ccccccC
Q 039233 95 TAAEETGRKLKIYAVEKNPNAV-------VTLHSLVRLEGWEKTVTIVS--CDMRC---WDAPEKADILVS-ELLGSFG 160 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~a~-------~~a~~~~~~n~~~~~V~vi~--~d~~~---~~~p~k~DiIVS-EllGs~~ 160 (359)
.+|.+.+.+ +|++|+|...+- +++++..+ .+.+ |++-+ -|.-- +.-|+++|+||+ ++.|.++
T Consensus 158 ~~A~~r~~~-~Vt~v~KaNvl~~t~glf~~~~~eva~--~yP~-V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDIL 232 (334)
T PRK08997 158 ELARKEGRK-KVTAVHKANIMKSTSGLFLKVAREVAL--RYPD-IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDIL 232 (334)
T ss_pred HHHHhcCCC-eEEEEeCCCcchhhhHHHHHHHHHHHh--hCCC-eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchh
Confidence 344555555 899999965432 12233322 2444 55433 33222 235899999996 4556544
No 476
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=27.52 E-value=1e+02 Score=28.05 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=29.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC------CCCccEEEe
Q 039233 107 YAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA------PEKADILVS 153 (359)
Q Consensus 107 ~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~------p~k~DiIVS 153 (359)
+=+|.|+.++. +.+ .+..+ |++++++.+++.. ..++|.|||
T Consensus 2 ~l~~~~~~~~~---~~~--~~~~~-v~~~~~~~~~i~~~~~~~~~~~~DaIVn 48 (186)
T cd02900 2 ILCDTNEEVTN---AYL--QNSKY-VCIVNGGLETIEDSVRKLHHGHFDSIVS 48 (186)
T ss_pred eeecCcHHHHH---HHh--CCCCC-eEEEeCCceecchhhcccccCccCEEEe
Confidence 45788887654 222 23444 9999999999864 467999996
No 477
>PRK07062 short chain dehydrogenase; Provisional
Probab=27.47 E-value=2.7e+02 Score=25.40 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+++..++.....+.+.+....-+.++..+..|+.+.+- -.++|++|..
T Consensus 24 ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~ 94 (265)
T PRK07062 24 TVELLLEAG--ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNN 94 (265)
T ss_pred HHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 555555666 47899999886655555444432223478899999988631 1468999964
No 478
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=27.36 E-value=1.5e+02 Score=29.00 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=47.5
Q ss_pred ccCCcCC-hh---H-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc----ccCCCCccEEEe
Q 039233 83 DRVPDEE-AS---S-LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC----WDAPEKADILVS 153 (359)
Q Consensus 83 d~v~D~g-~G---t-l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~----~~~p~k~DiIVS 153 (359)
++||=.| +| + ...+|+.+|+ .|+++=.+++-.+.++ +.|-...|.....|..+ +...+.+|+|+-
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 3555444 33 3 5577888886 4444444443222333 33333334433333222 333346999983
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEEcccc
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISIPSSY 187 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~ 187 (359)
..|. +.+....+.|+++|.++=-..
T Consensus 218 -~vG~--------~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 218 -TVGG--------DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -CCCH--------HHHHHHHHHhccCCEEEEEec
Confidence 4442 356666778899998654333
No 479
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=27.11 E-value=58 Score=31.83 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=47.4
Q ss_pred ccCCcCCh-hH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC-cccc-c-c-CCCCccEEEe
Q 039233 83 DRVPDEEA-SS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSC-DMRC-W-D-APEKADILVS 153 (359)
Q Consensus 83 d~v~D~g~-Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~-d~~~-~-~-~p~k~DiIVS 153 (359)
++|+=.|+ |. +..+|+..| .+|++++.++.-.+.+++ ..|....|..-.. +..+ + . .+..+|+++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~- 233 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF- 233 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCcEEEE-
Confidence 45655555 44 345666677 379999988764444432 2333221111111 2211 1 0 134689988
Q ss_pred ccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 154 ELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 154 EllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
|..|. ..+..+.+.|+++|.++
T Consensus 234 d~vG~--------~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 234 DNVGG--------DMLDAALLNMKIHGRIA 255 (348)
T ss_pred ECCCH--------HHHHHHHHHhccCCEEE
Confidence 34442 25667778899999976
No 480
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.02 E-value=2.3e+02 Score=25.70 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+.+..++...+.+.+.++.. +.++..+.+|+.+.+. -.++|++|..
T Consensus 25 ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ 93 (253)
T PRK05867 25 VALAYVEAG--AQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCN 93 (253)
T ss_pred HHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 555555667 47889999887666555555432 3568899999987531 1478999964
No 481
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=26.63 E-value=92 Score=30.64 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccc---------c------CC
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCW---------D------AP 145 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~---------~------~p 145 (359)
|--+|.|+ ++..++.+| +.|...|.+++++..++..++++ ++..+.- +.+.+- . .-
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~-l~k~~~~--g~l~~~~~~~~l~~i~~~~~~~~l 80 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKN-LEKLVEK--GKLTEEEADAALARITPTTDLAAL 80 (307)
T ss_pred EEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHH-HHHHHhc--CCCChhhHHHHHhhccccCchhHh
Confidence 34457766 555555576 79999999999988888777654 2221111 222221 0 11
Q ss_pred CCccEEEeccccccCCCCChHHHHHHHhhccCCCeEEEccccceeeeec
Q 039233 146 EKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPV 194 (359)
Q Consensus 146 ~k~DiIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~IP~~~t~~~~pi 194 (359)
..+|+||= -. +-+-|+-.+++..+.+.++|+.++=-+..++-+.-+
T Consensus 81 ~~~DlVIE-Av--~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~i 126 (307)
T COG1250 81 KDADLVIE-AV--VEDLELKKQVFAELEALAKPDAILASNTSSLSITEL 126 (307)
T ss_pred ccCCEEEE-ec--cccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHH
Confidence 45788882 11 123334456777788889998876554444433333
No 482
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=26.60 E-value=78 Score=30.42 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred ccCCcCCh-hH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEe-C---cc----ccccCCCCcc
Q 039233 83 DRVPDEEA-SS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVS-C---DM----RCWDAPEKAD 149 (359)
Q Consensus 83 d~v~D~g~-Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~-~---d~----~~~~~p~k~D 149 (359)
++|+=.|+ |. +..+|+..|+ +|+++..++.-.+.+++. .|... ++. . +. +... +..+|
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~--~Vi~~~~~~~~~~~~~~~---lGa~~---vi~~~~~~~~~~~i~~~~-~~gvd 223 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGC--YVVGSAGSDEKVDLLKNK---LGFDD---AFNYKEEPDLDAALKRYF-PNGID 223 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCce---eEEcCCcccHHHHHHHhC-CCCcE
Confidence 35554554 44 4466777774 788988887655555432 23322 222 1 21 1222 24689
Q ss_pred EEEeccccccCCCCChHHHHHHHhhccCCCeEEE
Q 039233 150 ILVSELLGSFGDNELSPECLDGAQRFLKQDGISI 183 (359)
Q Consensus 150 iIVSEllGs~~~~El~~e~L~~a~r~Lkp~Gi~I 183 (359)
+++- ..|. ..+..+.+.|+++|.++
T Consensus 224 ~v~d-~~g~--------~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 224 IYFD-NVGG--------KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred EEEE-CCCH--------HHHHHHHHHhccCcEEE
Confidence 9983 4442 24566678899999876
No 483
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=26.58 E-value=1e+02 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=13.5
Q ss_pred eeecCCeEEecCCCeEEEEEE
Q 039233 305 FFPLRTPVCIRPGSPLEVHFW 325 (359)
Q Consensus 305 ~fpl~~Pi~V~~G~~i~~~~~ 325 (359)
++..+.|++ ++||+|.+++.
T Consensus 3 ~i~TDr~iY-rPGetV~~~~~ 22 (99)
T PF01835_consen 3 FIQTDRPIY-RPGETVHFRAI 22 (99)
T ss_dssp EEEESSSEE--TTSEEEEEEE
T ss_pred EEECCccCc-CCCCEEEEEEE
Confidence 455577775 88888887755
No 484
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=26.49 E-value=2e+02 Score=27.77 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLH 120 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~ 120 (359)
|.=+|.|- ++++..+.|..+.|++.|.+......+.
T Consensus 6 v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 6 VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred EEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 44456653 7788888998877999999986555544
No 485
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=26.42 E-value=1.8e+02 Score=31.21 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhc-----C--CCCeEEEEeCccccccC----CCCccEEEeccccc
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLE-----G--WEKTVTIVSCDMRCWDA----PEKADILVSELLGS 158 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n-----~--~~~~V~vi~~d~~~~~~----p~k~DiIVSEllGs 158 (359)
++..+++.| .+|+++..++.....+.+.+... + ...+++++.+|+.+.+. -..+|+||+- .|.
T Consensus 96 LAr~LLk~G--~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~-AG~ 169 (576)
T PLN03209 96 TVRELLKLG--FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICC-IGA 169 (576)
T ss_pred HHHHHHHCC--CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEc-ccc
Confidence 555555666 48999988876554433333221 1 12469999999998541 2568999973 454
No 486
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.28 E-value=2.6e+02 Score=29.96 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=63.0
Q ss_pred CcHHHHHHHh-cCcccHHHHHHHHHHhhccc-CCcC-ChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 039233 55 LEAQTYETFE-KDSVKYIQYQRAIGNALVDR-VPDE-EASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEG 127 (359)
Q Consensus 55 L~s~~Ye~f~-~D~vry~~Y~~AI~~~~~d~-v~D~-g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~ 127 (359)
|....=|..+ +|+++-+. +.|...+.++ |+-. |+|| +..-.++.+++ +++-.|.++......+..++..-
T Consensus 223 lreI~ieDLLgR~pV~~d~--~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~-~i~l~~~~E~~~~~i~~el~~~~ 299 (588)
T COG1086 223 LREIEIEDLLGRPPVALDT--ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPK-EIILFSRDEYKLYLIDMELREKF 299 (588)
T ss_pred cccCCHHHHhCCCCCCCCH--HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCC-EEEEecCchHHHHHHHHHHHhhC
Confidence 4444444444 67777543 4566677764 4433 4566 44333455788 99999999988877776665421
Q ss_pred CCCeEEEEeCccccccC------CCCccEEEe
Q 039233 128 WEKTVTIVSCDMRCWDA------PEKADILVS 153 (359)
Q Consensus 128 ~~~~V~vi~~d~~~~~~------p~k~DiIVS 153 (359)
-..++..+-||+|+.+- .-|+|+|+.
T Consensus 300 ~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfH 331 (588)
T COG1086 300 PELKLRFYIGDVRDRDRVERAMEGHKVDIVFH 331 (588)
T ss_pred CCcceEEEecccccHHHHHHHHhcCCCceEEE
Confidence 14679999999999741 247999985
No 487
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=26.28 E-value=2.2e+02 Score=28.37 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=50.8
Q ss_pred hcCcccHHHHHHHHHHhhc-------c--cCCcCChhH-----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 039233 64 EKDSVKYIQYQRAIGNALV-------D--RVPDEEASS-----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWE 129 (359)
Q Consensus 64 ~~D~vry~~Y~~AI~~~~~-------d--~v~D~g~Gt-----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~ 129 (359)
+.|-..-.++|.|-..++. | .+.=+|||. +.-++.-.+-+ +|.....++++.+....+.++.+..
T Consensus 103 l~d~~~lTa~RTaAasavAa~~LA~~da~~laiIGaG~qA~~ql~a~~~v~~~~-~I~i~~r~~~~~e~~a~~l~~~~~~ 181 (330)
T COG2423 103 LLDATRLTALRTAAASAVAAKYLARKDASTLAIIGAGAQARTQLEALKAVRDIR-EIRVYSRDPEAAEAFAARLRKRGGE 181 (330)
T ss_pred EecCccHHHHHHHHHHHHHHHHhccCCCcEEEEECCcHHHHHHHHHHHhhCCcc-EEEEEcCCHHHHHHHHHHHHhhcCc
Confidence 4677788888887776542 2 245678997 22333334445 7888888888887777776654332
Q ss_pred CeEEEEeCccccccCCCCccEEEe
Q 039233 130 KTVTIVSCDMRCWDAPEKADILVS 153 (359)
Q Consensus 130 ~~V~vi~~d~~~~~~p~k~DiIVS 153 (359)
.+...+..+- .-+.+||||+
T Consensus 182 ---~v~a~~s~~~-av~~aDiIvt 201 (330)
T COG2423 182 ---AVGAADSAEE-AVEGADIVVT 201 (330)
T ss_pred ---cceeccCHHH-HhhcCCEEEE
Confidence 2222222111 1246888886
No 488
>PRK09222 isocitrate dehydrogenase; Validated
Probab=26.08 E-value=1.1e+02 Score=32.03 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHHcCCCCeEEEEeCCHHH-------HHHHHHHHHhcCCCCeEEEEe--Ccccc---ccCCCCccEEEe-ccccccC
Q 039233 95 TAAEETGRKLKIYAVEKNPNA-------VVTLHSLVRLEGWEKTVTIVS--CDMRC---WDAPEKADILVS-ELLGSFG 160 (359)
Q Consensus 95 ~~A~~aga~~~V~AVE~n~~a-------~~~a~~~~~~n~~~~~V~vi~--~d~~~---~~~p~k~DiIVS-EllGs~~ 160 (359)
..|.+.|++ +|++++|+..+ .+.+++..+ .+.+ |++-+ -|..- +.-|+++||||+ ++.|.++
T Consensus 160 e~A~~r~rk-kVt~v~KaNVmk~tdglf~~v~~eva~--eyPd-I~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDIL 234 (482)
T PRK09222 160 EYARANGRK-KVTCLTKDNIMKLTDGLFHKVFDEIAK--EYPD-IEAEHYIVDIGAARLATNPENFDVIVTPNLYGDIL 234 (482)
T ss_pred HHHHhcCCC-eEEEEECCCcccccchHHHHHHHHHHh--hCCC-ceEeeeeHHHHHHHHhcCcccceEEEEcccccchh
Confidence 344555556 89999997432 223444432 2544 44332 23222 245899999996 4555443
No 489
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=26.00 E-value=2.4e+02 Score=27.49 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=42.6
Q ss_pred CCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEeCcccc
Q 039233 85 VPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIVSCDMRC 141 (359)
Q Consensus 85 v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi~~d~~~ 141 (359)
|+=+|+|- ++...+++|.+ +++-||.+- .=++.|.+.+++-+-.-+|+.+.+++.+
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg-~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFR-NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 45567763 55555678887 888887321 1123344444432234468888888876
Q ss_pred cc--CCCCccEEEeccccc
Q 039233 142 WD--APEKADILVSELLGS 158 (359)
Q Consensus 142 ~~--~p~k~DiIVSEllGs 158 (359)
.. .-..+|+||+ .+++
T Consensus 81 ~~~~f~~~fdvVi~-alDn 98 (291)
T cd01488 81 KDEEFYRQFNIIIC-GLDS 98 (291)
T ss_pred hhHHHhcCCCEEEE-CCCC
Confidence 52 2357999996 3443
No 490
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=25.92 E-value=3.3e+02 Score=24.24 Aligned_cols=71 Identities=18% Similarity=0.059 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccccc-CCC--CccEEEeccccccCCCCChHHHH
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWD-APE--KADILVSELLGSFGDNELSPECL 169 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~-~p~--k~DiIVSEllGs~~~~El~~e~L 169 (359)
|+.+|.+.| ..|++.+.=.. +. + |=.....+.-+| +.+. .+. ++|++|+ |+ ++.+
T Consensus 21 la~a~~~~G--~~v~~~~~ygs-----~~--R--Gg~~~~~vris~-~pI~~~~~v~~~Dilv~--ld--------~~~~ 78 (186)
T PRK05844 21 LADVIAKTG--KEVQAFAFYGS-----AK--R--GAAMTAYNRIDD-EPILNHEKFMQPDYVLV--ID--------PGLV 78 (186)
T ss_pred HHHHHHhCC--ceEEEeeccCh-----hh--c--CCcEEEEEEECC-CcccCCCCcCCCCEEEE--ec--------HHHh
Confidence 667778887 47888776431 11 1 222223333343 3443 333 8999996 32 3344
Q ss_pred HHH--hhccCCCeEEEcc
Q 039233 170 DGA--QRFLKQDGISIPS 185 (359)
Q Consensus 170 ~~a--~r~Lkp~Gi~IP~ 185 (359)
..- .+.|||||++|=.
T Consensus 79 ~~~~~~~~l~~~g~iiin 96 (186)
T PRK05844 79 FIENIFANEKEDTKYIIT 96 (186)
T ss_pred ccccHhcCcCCCeEEEEE
Confidence 322 5678999998533
No 491
>PRK06128 oxidoreductase; Provisional
Probab=25.88 E-value=5.3e+02 Score=24.27 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHH--HHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEecc
Q 039233 93 LTTAAEETGRKLKIYAVEKNPN--AVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSEL 155 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~--a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSEl 155 (359)
++...++.|+ +|+.+..+.+ ....+.+.++. .+.++.++.+|+.+.+- -.++|++|...
T Consensus 71 ~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nA 142 (300)
T PRK06128 71 TAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQA--EGRKAVALPGDLKDEAFCRQLVERAVKELGGLDILVNIA 142 (300)
T ss_pred HHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 5555556675 5555544322 12222233332 35678899999987531 13689999743
No 492
>PRK08223 hypothetical protein; Validated
Probab=25.83 E-value=2.5e+02 Score=27.31 Aligned_cols=74 Identities=15% Similarity=0.028 Sum_probs=44.3
Q ss_pred ccCCcCChhH----HHHHHHHcCCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEeCcc
Q 039233 83 DRVPDEEASS----LTTAAEETGRKLKIYAVEKNP-------------------NAVVTLHSLVRLEGWEKTVTIVSCDM 139 (359)
Q Consensus 83 d~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~-------------------~a~~~a~~~~~~n~~~~~V~vi~~d~ 139 (359)
-+|+=+|||- ++...+++|.+ ++.-+|-+. .=++.|++.+++-+-.-+|+.+...+
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG-~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIG-KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCC-eEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 3688889863 56667788887 888887431 01223444444322334577777766
Q ss_pred cccc---CCCCccEEEeccccc
Q 039233 140 RCWD---APEKADILVSELLGS 158 (359)
Q Consensus 140 ~~~~---~p~k~DiIVSEllGs 158 (359)
.+-+ +-+.+|+||. .++.
T Consensus 107 ~~~n~~~ll~~~DlVvD-~~D~ 127 (287)
T PRK08223 107 GKENADAFLDGVDVYVD-GLDF 127 (287)
T ss_pred CccCHHHHHhCCCEEEE-CCCC
Confidence 5532 2357999983 3443
No 493
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.12 E-value=1.5e+02 Score=24.91 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=38.1
Q ss_pred cCCcCChhH----HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe
Q 039233 84 RVPDEEASS----LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gt----l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS 153 (359)
+++=+|+|- ++...+..|++ +|+-+-.+..-+ ++..+.. -+..++++.-+-.. +...++|+||+
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~-~i~i~nRt~~ra---~~l~~~~-~~~~~~~~~~~~~~-~~~~~~DivI~ 81 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAK-EITIVNRTPERA---EALAEEF-GGVNIEAIPLEDLE-EALQEADIVIN 81 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSS-EEEEEESSHHHH---HHHHHHH-TGCSEEEEEGGGHC-HHHHTESEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC-EEEEEECCHHHH---HHHHHHc-CccccceeeHHHHH-HHHhhCCeEEE
Confidence 567788874 34445566877 899999997533 3333322 12336665543222 12358999997
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=25.06 E-value=1.4e+02 Score=27.31 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=44.1
Q ss_pred cCCcCChhHH----HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEecccccc
Q 039233 84 RVPDEEASSL----TTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVSELLGSF 159 (359)
Q Consensus 84 ~v~D~g~Gtl----~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVSEllGs~ 159 (359)
+|+=+|.|.+ .....++|+++.|++=+.++.. ++..+ . .+|+++.++...-.+ ..+|+||. +-
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l----~~l~~-~---~~i~~~~~~~~~~dl-~~~~lVi~----at 77 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESEL----TLLAE-Q---GGITWLARCFDADIL-EGAFLVIA----AT 77 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHH----HHHHH-c---CCEEEEeCCCCHHHh-CCcEEEEE----CC
Confidence 5777888863 2444568876556555555433 22222 2 269999988764334 46898885 23
Q ss_pred CCCCChHHHHHHH
Q 039233 160 GDNELSPECLDGA 172 (359)
Q Consensus 160 ~~~El~~e~L~~a 172 (359)
++.++...+...+
T Consensus 78 ~d~~ln~~i~~~a 90 (205)
T TIGR01470 78 DDEELNRRVAHAA 90 (205)
T ss_pred CCHHHHHHHHHHH
Confidence 3444444455555
No 495
>PRK06949 short chain dehydrogenase; Provisional
Probab=25.06 E-value=3.2e+02 Score=24.68 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+++..++.....+...++. .+.+++++.+|+.+.+. -.++|+||..
T Consensus 25 ~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ 93 (258)
T PRK06949 25 FAQVLAQAG--AKVVLASRRVERLKELRAEIEA--EGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNN 93 (258)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 455555566 4899999988765555554432 24568999999876421 1368999973
No 496
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=24.79 E-value=99 Score=26.50 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=46.7
Q ss_pred HHHHHHhh-cccCCcCChhH---HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC--CCC
Q 039233 74 QRAIGNAL-VDRVPDEEASS---LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA--PEK 147 (359)
Q Consensus 74 ~~AI~~~~-~d~v~D~g~Gt---l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~--p~k 147 (359)
.+.|.+.. .+++.++|-|. ++...+++| +.|+|+|.++. ++. ..+.++.-|+.+-++ -+.
T Consensus 5 a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~ 70 (127)
T PF03686_consen 5 AEYIARLNNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEG 70 (127)
T ss_dssp HHHHHHHS-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S----------------STTEE---SSS--HHHHTT
T ss_pred HHHHHHhCCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcC
Confidence 34444433 35899999996 677777788 69999999996 111 235667777776332 367
Q ss_pred ccEEEeccccccCCCCChHHHHHHHhh
Q 039233 148 ADILVSELLGSFGDNELSPECLDGAQR 174 (359)
Q Consensus 148 ~DiIVSEllGs~~~~El~~e~L~~a~r 174 (359)
+|+|-| +-- ..|+.+.+++-|.+
T Consensus 71 a~lIYS--iRP--P~El~~~il~lA~~ 93 (127)
T PF03686_consen 71 ADLIYS--IRP--PPELQPPILELAKK 93 (127)
T ss_dssp EEEEEE--ES----TTSHHHHHHHHHH
T ss_pred CcEEEE--eCC--ChHHhHHHHHHHHH
Confidence 899987 221 34677766666654
No 497
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.64 E-value=2.2e+02 Score=26.21 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|+++..++.......+.+...+-..++.++.+|+.+.+. ..++|+||..
T Consensus 23 la~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ 93 (276)
T PRK05875 23 VAAGLVAAG--AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHC 93 (276)
T ss_pred HHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 555555667 38999998875444333333321113568999999987531 1268999964
No 498
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.59 E-value=3.4e+02 Score=24.43 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccC-----------CCCccEEEec
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDA-----------PEKADILVSE 154 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~-----------p~k~DiIVSE 154 (359)
++...++.| .+|++++.++...+.+.+.+.. .+.+++.+..|+.+.+- -.++|++|.-
T Consensus 24 l~~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 92 (252)
T PRK07035 24 IAKLLAQQG--AHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNN 92 (252)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 555556667 3899999987666555555443 23468889999987631 1368999963
No 499
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=24.51 E-value=99 Score=29.53 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcccc-------ccCCCCccEEEeccccccCCCCCh
Q 039233 93 LTTAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRC-------WDAPEKADILVSELLGSFGDNELS 165 (359)
Q Consensus 93 l~~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~-------~~~p~k~DiIVSEllGs~~~~El~ 165 (359)
+..+|...| .+|+++..++.-...++ ..+. + .++...-.+ +...+.+|+++.- .| .
T Consensus 182 ~~~~a~~~g--~~v~~~~~~~~~~~~~~----~~g~-~--~v~~~~~~~~~~~~~~~~~~~~vd~vl~~-~~-------~ 244 (341)
T cd08297 182 GVQYAKAMG--LRVIAIDVGDEKLELAK----ELGA-D--AFVDFKKSDDVEAVKELTGGGGAHAVVVT-AV-------S 244 (341)
T ss_pred HHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCC-c--EEEcCCCccHHHHHHHHhcCCCCCEEEEc-CC-------c
Confidence 445666666 48999999985444332 2232 2 122222111 1123568988831 11 2
Q ss_pred HHHHHHHhhccCCCeEEE
Q 039233 166 PECLDGAQRFLKQDGISI 183 (359)
Q Consensus 166 ~e~L~~a~r~Lkp~Gi~I 183 (359)
.+.+..+.+.|+++|+++
T Consensus 245 ~~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 245 AAAYEQALDYLRPGGTLV 262 (341)
T ss_pred hHHHHHHHHHhhcCCEEE
Confidence 346667778889999876
No 500
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.45 E-value=1.4e+02 Score=27.23 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=33.0
Q ss_pred cCCcCChhHHH----HHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCccccccCCCCccEEEe
Q 039233 84 RVPDEEASSLT----TAAEETGRKLKIYAVEKNPNAVVTLHSLVRLEGWEKTVTIVSCDMRCWDAPEKADILVS 153 (359)
Q Consensus 84 ~v~D~g~Gtl~----~~A~~aga~~~V~AVE~n~~a~~~a~~~~~~n~~~~~V~vi~~d~~~~~~p~k~DiIVS 153 (359)
+|+=+|.|.++ ....++|+++.|++=+..+.+ ++.... .+|++.....++-.+ ..+|+||+
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l----~~l~~~----~~i~~~~~~~~~~~l-~~adlVia 76 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENL----VKLVEE----GKIRWKQKEFEPSDI-VDAFLVIA 76 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHH----HHHHhC----CCEEEEecCCChhhc-CCceEEEE
Confidence 57788998733 333457755444443333332 232221 347776655444333 47899987
Done!