BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039234
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE
NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN

High Scoring Gene Products

Symbol, full name Information P value
AT2G01410 protein from Arabidopsis thaliana 3.8e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039234
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2038751 - symbol:AT2G01410 "AT2G01410" species...   241  3.8e-20   1


>TAIR|locus:2038751 [details] [associations]
            symbol:AT2G01410 "AT2G01410" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005783 "endoplasmic reticulum" evidence=IDA] GO:GO:0005783
            GO:GO:0005886 GO:GO:0005774 EMBL:CP002685 Gene3D:2.120.10.30
            InterPro:IPR011042 EMBL:AC006200 EMBL:AC005560 UniGene:At.32408
            EMBL:AY735571 EMBL:AY924735 IPI:IPI00544408 PIR:D84424
            RefSeq:NP_178250.1 UniGene:At.46305 UniGene:At.75648
            ProteinModelPortal:Q9ZNQ5 SMR:Q9ZNQ5 PRIDE:Q9ZNQ5
            EnsemblPlants:AT2G01410.1 GeneID:814669 KEGG:ath:AT2G01410
            TAIR:At2g01410 HOGENOM:HOG000005792 InParanoid:Q9ZNQ5 OMA:FWRFQMK
            PhylomeDB:Q9ZNQ5 ProtClustDB:CLSN2683530 ArrayExpress:Q9ZNQ5
            Genevestigator:Q9ZNQ5 Uniprot:Q9ZNQ5
        Length = 387

 Score = 241 (89.9 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 49/97 (50%), Positives = 63/97 (64%)

Query:     1 GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREE-----FSIXXXXXXX 55
             GVVYD+  L+ E F T+VTV G DR YVLYGRVMEG++G+S +EE     F I       
Sbjct:   289 GVVYDEIDLDIEGFPTAVTVAGRDRIYVLYGRVMEGIMGSSYKEEGAREWFGIEEVWSEK 348

Query:    56 XXXXXXXWVFVLLGLGLAYFLFWRFQMSKLVRDINKK 92
                    W++VL+G G AYF FWRFQM KL+ +++KK
Sbjct:   349 EGGEDKIWLYVLIGFGFAYFCFWRFQMKKLITNMDKK 385


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        80   0.00091  102 3  11 22  0.38    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  429 (46 KB)
  Total size of DFA:  83 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.30u 0.14s 6.44t   Elapsed:  00:00:00
  Total cpu time:  6.30u 0.14s 6.44t   Elapsed:  00:00:00
  Start:  Fri May 10 15:35:34 2013   End:  Fri May 10 15:35:34 2013

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