Query 039234
Match_columns 94
No_of_seqs 17 out of 19
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03063 srtB_target sortase 89.8 0.16 3.5E-06 29.0 0.9 28 54-81 2-29 (29)
2 PF11457 DUF3021: Protein of u 72.1 6.1 0.00013 26.7 3.4 27 67-93 110-136 (136)
3 PF13106 DUF3961: Domain of un 69.3 3.5 7.6E-05 25.2 1.6 29 43-77 4-32 (40)
4 COG3763 Uncharacterized protei 60.1 11 0.00023 25.5 2.7 24 65-88 13-36 (71)
5 COG1862 YajC Preprotein transl 59.5 5.5 0.00012 27.7 1.3 23 63-85 12-34 (97)
6 PF12273 RCR: Chitin synthesis 59.4 7.4 0.00016 26.9 1.9 20 62-81 4-23 (130)
7 PF12669 P12: Virus attachment 59.4 16 0.00034 23.0 3.2 21 64-84 3-23 (58)
8 PF15050 SCIMP: SCIMP protein 58.8 8.8 0.00019 28.6 2.3 18 67-84 20-37 (133)
9 PF06724 DUF1206: Domain of Un 56.6 8.2 0.00018 24.1 1.6 19 62-80 47-65 (73)
10 PF02699 YajC: Preprotein tran 56.3 11 0.00025 24.6 2.3 21 65-85 7-27 (82)
11 PF01436 NHL: NHL repeat; Int 54.6 18 0.0004 19.0 2.6 17 13-29 2-18 (28)
12 PF15013 CCSMST1: CCSMST1 fami 53.8 15 0.00033 24.8 2.7 34 44-78 13-46 (77)
13 PF14564 Membrane_bind: Membra 48.9 18 0.00039 25.4 2.5 32 7-38 44-76 (110)
14 PRK10234 DNA-binding transcrip 48.7 28 0.0006 25.0 3.5 31 61-91 1-33 (118)
15 PF03672 UPF0154: Uncharacteri 46.4 27 0.00058 23.0 2.8 24 64-88 5-29 (64)
16 TIGR00739 yajC preprotein tran 44.4 15 0.00032 24.4 1.4 18 68-85 11-28 (84)
17 PF06923 GutM: Glucitol operon 42.4 40 0.00086 23.4 3.4 20 72-91 13-32 (109)
18 PF12273 RCR: Chitin synthesis 41.4 22 0.00049 24.5 2.0 18 63-80 2-19 (130)
19 PHA02246 hypothetical protein 41.1 19 0.00041 28.2 1.7 23 54-76 134-156 (192)
20 PF07431 DUF1512: Protein of u 40.6 25 0.00053 29.8 2.5 29 65-93 7-35 (355)
21 PRK01844 hypothetical protein; 40.6 36 0.00078 22.9 2.8 22 66-88 14-36 (72)
22 TIGR03778 VPDSG_CTERM VPDSG-CT 40.5 31 0.00068 19.3 2.1 15 65-79 8-22 (26)
23 PRK00523 hypothetical protein; 38.6 40 0.00087 22.7 2.8 22 66-88 15-37 (72)
24 PF07172 GRP: Glycine rich pro 38.4 25 0.00055 24.0 1.9 19 65-83 6-24 (95)
25 PF14147 Spore_YhaL: Sporulati 37.3 29 0.00063 22.2 1.9 19 61-79 2-21 (52)
26 PF11446 DUF2897: Protein of u 36.6 18 0.0004 22.8 0.9 15 61-75 4-18 (55)
27 PRK09173 F0F1 ATP synthase sub 36.5 32 0.0007 24.1 2.3 16 59-74 2-17 (159)
28 PF04999 FtsL: Cell division p 36.1 62 0.0013 20.9 3.4 18 74-91 29-46 (97)
29 PF07893 DUF1668: Protein of u 35.7 49 0.0011 26.4 3.4 37 10-48 106-142 (342)
30 PF08041 PetM: PetM family of 34.6 28 0.0006 20.2 1.4 16 63-78 11-26 (31)
31 TIGR02230 ATPase_gene1 F0F1-AT 34.0 35 0.00076 23.8 2.1 21 60-80 73-95 (100)
32 PF11743 DUF3301: Protein of u 31.9 38 0.00083 22.8 1.9 25 64-88 2-27 (97)
33 PRK14872 rod shape-determining 31.3 30 0.00065 28.7 1.6 21 61-81 9-29 (337)
34 KOG0428 Non-canonical ubiquiti 30.5 37 0.0008 28.3 2.0 34 57-90 276-311 (314)
35 KOG4122 Mitochondrial/chloropl 30.0 37 0.00081 20.6 1.5 13 19-31 16-28 (38)
36 PF12072 DUF3552: Domain of un 29.9 57 0.0012 24.2 2.7 22 64-85 8-29 (201)
37 PRK10559 p-hydroxybenzoic acid 28.3 46 0.00099 25.9 2.1 17 64-80 12-28 (310)
38 PF14257 DUF4349: Domain of un 27.7 17 0.00037 27.4 -0.4 6 74-79 257-262 (262)
39 PF06739 SBBP: Beta-propeller 26.9 81 0.0018 17.8 2.5 20 10-29 10-29 (38)
40 PRK11187 replication initiatio 26.5 19 0.00041 27.9 -0.3 48 8-65 101-149 (182)
41 PF14155 DUF4307: Domain of un 26.1 71 0.0015 22.0 2.5 23 62-85 7-29 (112)
42 PF02009 Rifin_STEVOR: Rifin/s 26.0 38 0.00082 27.5 1.3 29 62-93 263-291 (299)
43 KOG4628 Predicted E3 ubiquitin 25.3 2.5E+02 0.0054 23.7 5.9 62 24-88 129-200 (348)
44 PF04616 Glyco_hydro_43: Glyco 25.1 2.2E+02 0.0049 20.5 5.1 40 17-57 244-284 (286)
45 PRK11677 hypothetical protein; 24.3 44 0.00095 24.4 1.2 20 61-80 1-23 (134)
46 PHA03240 envelope glycoprotein 23.6 50 0.0011 27.0 1.5 25 60-85 212-236 (258)
47 PRK05886 yajC preprotein trans 23.4 67 0.0015 22.7 2.0 16 70-85 14-29 (109)
48 PF06480 FtsH_ext: FtsH Extrac 22.5 28 0.0006 21.4 -0.1 10 71-80 9-18 (110)
49 COG2149 Predicted membrane pro 22.4 1.2E+02 0.0027 22.2 3.2 27 64-92 62-88 (120)
50 PF07589 VPEP: PEP-CTERM motif 22.4 1E+02 0.0022 16.5 2.1 13 65-77 8-20 (25)
51 PF13163 DUF3999: Protein of u 21.7 40 0.00087 28.0 0.7 18 62-79 411-428 (429)
52 PF00430 ATP-synt_B: ATP synth 21.6 1.3E+02 0.0029 19.6 3.1 28 65-92 4-31 (132)
53 KOG1690 emp24/gp25L/p24 family 21.6 1E+02 0.0022 24.7 2.9 35 52-88 173-208 (215)
54 COG0257 RpmJ Ribosomal protein 21.1 77 0.0017 19.2 1.7 12 19-30 16-27 (38)
55 PF02238 COX7a: Cytochrome c o 20.8 95 0.0021 19.8 2.1 17 66-82 35-51 (56)
56 PF08693 SKG6: Transmembrane a 20.7 57 0.0012 19.7 1.1 13 67-79 23-36 (40)
57 PRK14471 F0F1 ATP synthase sub 20.7 1.5E+02 0.0032 20.9 3.3 28 65-92 13-40 (164)
58 PF06682 DUF1183: Protein of u 20.1 86 0.0019 25.9 2.3 28 55-82 150-177 (318)
59 KOG3385 V-SNARE [Intracellular 20.1 61 0.0013 23.7 1.3 23 57-79 93-115 (118)
No 1
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=89.78 E-value=0.16 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.3
Q ss_pred cccCCCceEEehhHHHHHHHHHHHHHhh
Q 039234 54 KKENEEENVWVFVLLGLGLAYFLFWRFQ 81 (94)
Q Consensus 54 ~kE~e~e~Vw~~vlig~~la~f~fWRFQ 81 (94)
||-|+..|+++|..+-++-++|+.+|++
T Consensus 2 PkT~D~a~i~ly~~l~~~s~~~Li~k~~ 29 (29)
T TIGR03063 2 PKTGDSAQIGLYAVLFLGSGLFLIRKRK 29 (29)
T ss_pred CCCccchhHHHHHHHHHHHHHHHhhccC
Confidence 6778889999998888887788888864
No 2
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=72.06 E-value=6.1 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhc
Q 039234 67 LLGLGLAYFLFWRFQMSKLVRDINKKT 93 (94)
Q Consensus 67 lig~~la~f~fWRFQM~ql~~nm~kK~ 93 (94)
++++.+.+.++..+|-|+-+++||+|.
T Consensus 110 fi~IYliIw~~~y~~~k~~i~kiN~kL 136 (136)
T PF11457_consen 110 FIIIYLIIWLIFYLYWKKDIKKINEKL 136 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666677788899999999984
No 3
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=69.31 E-value=3.5 Score=25.18 Aligned_cols=29 Identities=38% Similarity=0.839 Sum_probs=22.8
Q ss_pred CcceeEEEEEecccCCCceEEehhHHHHHHHHHHH
Q 039234 43 REEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLF 77 (94)
Q Consensus 43 re~F~IeEv~~~kE~e~e~Vw~~vlig~~la~f~f 77 (94)
.+||+|||-.| |-||-|=..|++...++|
T Consensus 4 n~~FGie~~~s------dqIWFYG~~~ls~~m~~~ 32 (40)
T PF13106_consen 4 NEWFGIEECKS------DQIWFYGFFGLSIFMILF 32 (40)
T ss_pred hhhcCcccccc------ccEEEeeHHHHHHHHHHH
Confidence 47899986554 789999999888776665
No 4
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.13 E-value=11 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHH
Q 039234 65 FVLLGLGLAYFLFWRFQMSKLVRD 88 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ql~~n 88 (94)
.+|+|+++.+|..-|.=||||-+|
T Consensus 13 ~ll~G~~~G~fiark~~~k~lk~N 36 (71)
T COG3763 13 ALLAGLIGGFFIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456677777777777777888776
No 5
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=59.53 E-value=5.5 Score=27.66 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=16.0
Q ss_pred EehhHHHHHHHHHHHHHhhHHHH
Q 039234 63 WVFVLLGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 63 w~~vlig~~la~f~fWRFQM~ql 85 (94)
++++++-+++-||+.||=|.+|-
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~ 34 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRM 34 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHH
Confidence 34455556677888899998763
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.40 E-value=7.4 Score=26.87 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=10.6
Q ss_pred EEehhHHHHHHHHHHHHHhh
Q 039234 62 VWVFVLLGLGLAYFLFWRFQ 81 (94)
Q Consensus 62 Vw~~vlig~~la~f~fWRFQ 81 (94)
+|+++++.+.|.+|++.++=
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555665553
No 7
>PF12669 P12: Virus attachment protein p12 family
Probab=59.39 E-value=16 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=11.2
Q ss_pred ehhHHHHHHHHHHHHHhhHHH
Q 039234 64 VFVLLGLGLAYFLFWRFQMSK 84 (94)
Q Consensus 64 ~~vlig~~la~f~fWRFQM~q 84 (94)
++.+|.+++++|..||...|+
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKD 23 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555456666554
No 8
>PF15050 SCIMP: SCIMP protein
Probab=58.76 E-value=8.8 Score=28.62 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 039234 67 LLGLGLAYFLFWRFQMSK 84 (94)
Q Consensus 67 lig~~la~f~fWRFQM~q 84 (94)
-+++||.+||.-|-|.||
T Consensus 20 S~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 20 SVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 356788888889999987
No 9
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=56.61 E-value=8.2 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.948 Sum_probs=16.9
Q ss_pred EEehhHHHHHHHHHHHHHh
Q 039234 62 VWVFVLLGLGLAYFLFWRF 80 (94)
Q Consensus 62 Vw~~vlig~~la~f~fWRF 80 (94)
-|+..++|++|+.+-+|+|
T Consensus 47 ~~ll~~vg~gli~~gi~~~ 65 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQF 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999986
No 10
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=56.34 E-value=11 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHH
Q 039234 65 FVLLGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ql 85 (94)
++++-+++.||+.+|=|.||-
T Consensus 7 ~lv~~~~i~yf~~~rpqkk~~ 27 (82)
T PF02699_consen 7 PLVIIFVIFYFLMIRPQKKQQ 27 (82)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhheecHHHHHH
Confidence 344555666788888887764
No 11
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=54.63 E-value=18 Score=19.01 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=15.2
Q ss_pred cceeeEEEccCCeEEEE
Q 039234 13 KFATSVTVGGEDRAYVL 29 (94)
Q Consensus 13 ~f~taV~V~~~~R~YvL 29 (94)
..|..++|...+.+||.
T Consensus 2 ~~P~gvav~~~g~i~Va 18 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVA 18 (28)
T ss_dssp SSEEEEEEETTSEEEEE
T ss_pred cCCcEEEEeCCCCEEEE
Confidence 36899999999999997
No 12
>PF15013 CCSMST1: CCSMST1 family
Probab=53.78 E-value=15 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.6
Q ss_pred cceeEEEEEecccCCCceEEehhHHHHHHHHHHHH
Q 039234 44 EEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLFW 78 (94)
Q Consensus 44 e~F~IeEv~~~kE~e~e~Vw~~vlig~~la~f~fW 78 (94)
..|.+++-..++..+ .|-|=...|.+.|++|++|
T Consensus 13 ~~w~v~~s~~~~~~~-~PWyq~~~is~sl~~fliy 46 (77)
T PF15013_consen 13 ARWTVEHSRGGKQQR-MPWYQVYPISLSLAAFLIY 46 (77)
T ss_pred cccccccccCCCCCC-CcceeeehhHHHHHHHHHH
Confidence 356888877766655 7999888888888888888
No 13
>PF14564 Membrane_bind: Membrane binding; PDB: 1YHP_A 2B1O_A.
Probab=48.89 E-value=18 Score=25.41 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred ccCCcccceeeEEEccCC-eEEEEeeeehhhhc
Q 039234 7 TALNQEKFATSVTVGGED-RAYVLYGRVMEGLL 38 (94)
Q Consensus 7 ~~ld~~~f~taV~V~~~~-R~YvL~g~~~eg~~ 38 (94)
.+++.....|+++||+.+ ..|+++|.+-=-+-
T Consensus 44 ~~~~~~~iv~~I~Vr~~~~g~~v~nGsvYFkY~ 76 (110)
T PF14564_consen 44 PPLDGSEIVCQISVRDTDWGQYVANGSVYFKYN 76 (110)
T ss_dssp ---STSEEEEEEEEEESST-SEEEEEEEEEEEE
T ss_pred cCCCCCcEEEEEEEEeccCCceEecceEEEEEC
Confidence 456667889999999999 99999998763333
No 14
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=48.65 E-value=28 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=19.1
Q ss_pred eEEehhHHH--HHHHHHHHHHhhHHHHHHHhhh
Q 039234 61 NVWVFVLLG--LGLAYFLFWRFQMSKLVRDINK 91 (94)
Q Consensus 61 ~Vw~~vlig--~~la~f~fWRFQM~ql~~nm~k 91 (94)
|+|.+++++ +-+.=..+=-||||++-++|++
T Consensus 1 ~~~~LIi~~~~a~llQ~~lg~~Qik~Fn~~~~~ 33 (118)
T PRK10234 1 MVSALITVAVIAWCAQLALGGWQISRFNRAFDT 33 (118)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345443333 2333345667899999988875
No 15
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.38 E-value=27 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=13.7
Q ss_pred ehhHHHHHHHHHHHHHhhH-HHHHHH
Q 039234 64 VFVLLGLGLAYFLFWRFQM-SKLVRD 88 (94)
Q Consensus 64 ~~vlig~~la~f~fWRFQM-~ql~~n 88 (94)
+.+++|+.+.+|. -|++| +||-+|
T Consensus 5 lali~G~~~Gff~-ar~~~~k~l~~N 29 (64)
T PF03672_consen 5 LALIVGAVIGFFI-ARKYMEKQLKEN 29 (64)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHC
Confidence 3456666666555 45555 556555
No 16
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=44.35 E-value=15 Score=24.43 Aligned_cols=18 Identities=33% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 039234 68 LGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 68 ig~~la~f~fWRFQM~ql 85 (94)
+.+++.||+.||=|.||-
T Consensus 11 v~~~i~yf~~~rpqkK~~ 28 (84)
T TIGR00739 11 LIFLIFYFLIIRPQRKRR 28 (84)
T ss_pred HHHHHHHHheechHHHHH
Confidence 335566888888888763
No 17
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=42.44 E-value=40 Score=23.39 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHHhhh
Q 039234 72 LAYFLFWRFQMSKLVRDINK 91 (94)
Q Consensus 72 la~f~fWRFQM~ql~~nm~k 91 (94)
+.=+.+=-||||++-++|++
T Consensus 13 ~lQ~~l~~~Qik~f~~~~~~ 32 (109)
T PF06923_consen 13 LLQILLGWFQIKNFNKAYKE 32 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456677999999988875
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.35 E-value=22 Score=24.47 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=13.9
Q ss_pred EehhHHHHHHHHHHHHHh
Q 039234 63 WVFVLLGLGLAYFLFWRF 80 (94)
Q Consensus 63 w~~vlig~~la~f~fWRF 80 (94)
|++++|.+++++++|-=|
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 888888888877777655
No 19
>PHA02246 hypothetical protein
Probab=41.09 E-value=19 Score=28.22 Aligned_cols=23 Identities=39% Similarity=0.782 Sum_probs=18.9
Q ss_pred cccCCCceEEehhHHHHHHHHHH
Q 039234 54 KKENEEENVWVFVLLGLGLAYFL 76 (94)
Q Consensus 54 ~kE~e~e~Vw~~vlig~~la~f~ 76 (94)
+|.|||-+-|+|+++|.||+...
T Consensus 134 TK~SEg~n~~l~lii~~GL~~L~ 156 (192)
T PHA02246 134 TKSAEGTNRFLFLIIGLGLASLI 156 (192)
T ss_pred hcccCCCChhHHHHHHHHHHHHH
Confidence 46799999999999999887543
No 20
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=40.60 E-value=25 Score=29.76 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhc
Q 039234 65 FVLLGLGLAYFLFWRFQMSKLVRDINKKT 93 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ql~~nm~kK~ 93 (94)
+-++-..+.+|+|=||||.....++.+|.
T Consensus 7 i~~l~~~~~i~~~q~iq~~~~~~~I~~~l 35 (355)
T PF07431_consen 7 ISMLIWFLFIFIFQRIQMWRWSRDIEGKL 35 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778889999999998888774
No 21
>PRK01844 hypothetical protein; Provisional
Probab=40.56 E-value=36 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHhhH-HHHHHH
Q 039234 66 VLLGLGLAYFLFWRFQM-SKLVRD 88 (94)
Q Consensus 66 vlig~~la~f~fWRFQM-~ql~~n 88 (94)
+++|+.+.+| +-|.+| +||-+|
T Consensus 14 li~G~~~Gff-~ark~~~k~lk~N 36 (72)
T PRK01844 14 LVAGVALGFF-IARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHC
Confidence 4455555544 445555 555554
No 22
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=40.46 E-value=31 Score=19.28 Aligned_cols=15 Identities=53% Similarity=0.687 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHH
Q 039234 65 FVLLGLGLAYFLFWR 79 (94)
Q Consensus 65 ~vlig~~la~f~fWR 79 (94)
+.|.|++++.++++|
T Consensus 8 ~~Ll~~~l~~l~~~r 22 (26)
T TIGR03778 8 LALLGLGLLGLLGLR 22 (26)
T ss_pred HHHHHHHHHHHHHHh
Confidence 578899999998887
No 23
>PRK00523 hypothetical protein; Provisional
Probab=38.60 E-value=40 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHhhH-HHHHHH
Q 039234 66 VLLGLGLAYFLFWRFQM-SKLVRD 88 (94)
Q Consensus 66 vlig~~la~f~fWRFQM-~ql~~n 88 (94)
+++|+.+.+| +-|.|| +||-+|
T Consensus 15 li~G~~~Gff-iark~~~k~l~~N 37 (72)
T PRK00523 15 LIVGGIIGYF-VSKKMFKKQIREN 37 (72)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHC
Confidence 4455555544 455555 555555
No 24
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.43 E-value=25 Score=24.02 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHhhHH
Q 039234 65 FVLLGLGLAYFLFWRFQMS 83 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ 83 (94)
|||+++.||++++---+++
T Consensus 6 ~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7888999998888776665
No 25
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=37.31 E-value=29 Score=22.23 Aligned_cols=19 Identities=16% Similarity=0.520 Sum_probs=13.3
Q ss_pred eEEehhH-HHHHHHHHHHHH
Q 039234 61 NVWVFVL-LGLGLAYFLFWR 79 (94)
Q Consensus 61 ~Vw~~vl-ig~~la~f~fWR 79 (94)
|.|+|++ +|+.+.-+|+-+
T Consensus 2 PwWvY~vi~gI~~S~ym~v~ 21 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVK 21 (52)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 7899865 467777777644
No 26
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=36.60 E-value=18 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=11.6
Q ss_pred eEEehhHHHHHHHHH
Q 039234 61 NVWVFVLLGLGLAYF 75 (94)
Q Consensus 61 ~Vw~~vlig~~la~f 75 (94)
.+|++++|.+|+.+=
T Consensus 4 ~~wlIIviVlgvIig 18 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIG 18 (55)
T ss_pred hhhHHHHHHHHHHHh
Confidence 479999888887763
No 27
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=36.49 E-value=32 Score=24.12 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=8.4
Q ss_pred CceEEehhHHHHHHHH
Q 039234 59 EENVWVFVLLGLGLAY 74 (94)
Q Consensus 59 ~e~Vw~~vlig~~la~ 74 (94)
++.+|.++.+++.|.+
T Consensus 2 ~~~~w~~i~f~i~l~~ 17 (159)
T PRK09173 2 DATFWAFVGLVLFLAL 17 (159)
T ss_pred CchHHHHHHHHHHHHH
Confidence 3556765555544433
No 28
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.10 E-value=62 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHHhhh
Q 039234 74 YFLFWRFQMSKLVRDINK 91 (94)
Q Consensus 74 ~f~fWRFQM~ql~~nm~k 91 (94)
...++++|.+++....++
T Consensus 29 ~~v~~~~~~~~~~~~l~~ 46 (97)
T PF04999_consen 29 GVVYSRHQSRQLFYELQQ 46 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344689999988766543
No 29
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=35.74 E-value=49 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=23.1
Q ss_pred CcccceeeEEEccCCeEEEEeeeehhhhccCCCCcceeE
Q 039234 10 NQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSI 48 (94)
Q Consensus 10 d~~~f~taV~V~~~~R~YvL~g~~~eg~~g~~~re~F~I 48 (94)
.+...|.|++|+++ +|||.........+++.+.+|+.
T Consensus 106 ~pk~~pisv~VG~~--LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 106 SPKRCPISVSVGDK--LYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred CCCcceEEEEeCCe--EEEeeccCccccccCccceeEEE
Confidence 45788999999655 99997655544333322335443
No 30
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=34.65 E-value=28 Score=20.16 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=11.8
Q ss_pred EehhHHHHHHHHHHHH
Q 039234 63 WVFVLLGLGLAYFLFW 78 (94)
Q Consensus 63 w~~vlig~~la~f~fW 78 (94)
|.++|+|+++.+.+.+
T Consensus 11 ~~lvlvGla~Gf~LLk 26 (31)
T PF08041_consen 11 FGLVLVGLALGFVLLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhe
Confidence 5678888888776654
No 31
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=33.98 E-value=35 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.645 Sum_probs=14.7
Q ss_pred ceEEe--hhHHHHHHHHHHHHHh
Q 039234 60 ENVWV--FVLLGLGLAYFLFWRF 80 (94)
Q Consensus 60 e~Vw~--~vlig~~la~f~fWRF 80 (94)
++.|. ++++|++++.+..|++
T Consensus 73 ~~~~tl~~lllGv~~G~~n~w~w 95 (100)
T TIGR02230 73 PFSWTLTMLIVGVVIGCLNAWHW 95 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 5677888888888876
No 32
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=31.91 E-value=38 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=16.5
Q ss_pred ehhHHHHHHHHHHHHHh-hHHHHHHH
Q 039234 64 VFVLLGLGLAYFLFWRF-QMSKLVRD 88 (94)
Q Consensus 64 ~~vlig~~la~f~fWRF-QM~ql~~n 88 (94)
+++++.++++.++||.- +++.++..
T Consensus 2 Ll~llll~~~~~~~w~~~~~~E~A~~ 27 (97)
T PF11743_consen 2 LLLLLLLALVGWFWWQSRRQRERALQ 27 (97)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35677778888888875 45544433
No 33
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=31.34 E-value=30 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.5
Q ss_pred eEEehhHHHHHHHHHHHHHhh
Q 039234 61 NVWVFVLLGLGLAYFLFWRFQ 81 (94)
Q Consensus 61 ~Vw~~vlig~~la~f~fWRFQ 81 (94)
+.-.++++.+++++|++||-.
T Consensus 9 ~~~~~~l~~~~~~l~l~~~~~ 29 (337)
T PRK14872 9 KVRFIVYLIIALGIIVSWSLP 29 (337)
T ss_pred chhhHHHHHHHHHHHHHhcCC
Confidence 455789999999999999754
No 34
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=37 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=27.4
Q ss_pred CCCceEEehhHHHHHHHHHHHHHhhH--HHHHHHhh
Q 039234 57 NEEENVWVFVLLGLGLAYFLFWRFQM--SKLVRDIN 90 (94)
Q Consensus 57 ~e~e~Vw~~vlig~~la~f~fWRFQM--~ql~~nm~ 90 (94)
.-|+.-|++|.+.++|+..+|-||-. .+++++|+
T Consensus 276 ~~d~~t~l~viltiAl~~lif~~~~lan~y~~dfmd 311 (314)
T KOG0428|consen 276 DHDGSTVLIVILTIALAALIFRRIYLANEYIFDFMD 311 (314)
T ss_pred CCCCceehHHHHHHHHHHHHHHHHHHhccceecccc
Confidence 34568999999999999999999954 35667775
No 35
>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=30.02 E-value=37 Score=20.58 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.9
Q ss_pred EEccCCeEEEEee
Q 039234 19 TVGGEDRAYVLYG 31 (94)
Q Consensus 19 ~V~~~~R~YvL~g 31 (94)
.|+.++|+||+-.
T Consensus 16 ~VrRrgR~yViC~ 28 (38)
T KOG4122|consen 16 LVRRRGRVYVICK 28 (38)
T ss_pred EEEEcccEEEEcC
Confidence 5889999999853
No 36
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=29.92 E-value=57 Score=24.19 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.3
Q ss_pred ehhHHHHHHHHHHHHHhhHHHH
Q 039234 64 VFVLLGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 64 ~~vlig~~la~f~fWRFQM~ql 85 (94)
+.++||++++|++.+...-+++
T Consensus 8 ~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 8 VALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888776655443
No 37
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=28.27 E-value=46 Score=25.94 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.9
Q ss_pred ehhHHHHHHHHHHHHHh
Q 039234 64 VFVLLGLGLAYFLFWRF 80 (94)
Q Consensus 64 ~~vlig~~la~f~fWRF 80 (94)
.++|+.+++++|+.|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (310)
T PRK10559 12 AITLVLVILAFIAIFRA 28 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888888876
No 38
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.66 E-value=17 Score=27.44 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.3
Q ss_pred HHHHHH
Q 039234 74 YFLFWR 79 (94)
Q Consensus 74 ~f~fWR 79 (94)
++++||
T Consensus 257 ~~~~~R 262 (262)
T PF14257_consen 257 VRFVRR 262 (262)
T ss_pred HheEeC
Confidence 333443
No 39
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=26.86 E-value=81 Score=17.82 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=16.9
Q ss_pred CcccceeeEEEccCCeEEEE
Q 039234 10 NQEKFATSVTVGGEDRAYVL 29 (94)
Q Consensus 10 d~~~f~taV~V~~~~R~YvL 29 (94)
+....+.++||...+.+||.
T Consensus 10 ~~~~~~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 10 GAQDYGNGIAVDSNGNIYVT 29 (38)
T ss_pred CCceeEEEEEECCCCCEEEE
Confidence 44568999999999999986
No 40
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=26.54 E-value=19 Score=27.91 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=34.7
Q ss_pred cCCcccceeeE-EEccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccCCCceEEeh
Q 039234 8 ALNQEKFATSV-TVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVF 65 (94)
Q Consensus 8 ~ld~~~f~taV-~V~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~e~e~Vw~~ 65 (94)
.+|++.|+.|- .+.+|+|+|--- =.+-++.+|. . .-||+=.+-|-|++
T Consensus 101 ~~~~~~F~~ate~i~GR~RvYFA~--~e~tLL~sg~-~-------tkPK~Ip~TpfWVi 149 (182)
T PRK11187 101 RLDPQAFAQATESLHGRTRVYFAR--DEQTLLKAGN-S-------TKPKHIPGTPFWVI 149 (182)
T ss_pred HhCHHHHHHHHHHccCCcceeecC--CHHHHHHcCC-C-------CCCCcCCCCCeeEE
Confidence 46889999998 799999999653 2444443333 2 24788889999986
No 41
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=26.08 E-value=71 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=14.1
Q ss_pred EEehhHHHHHHHHHHHHHhhHHHH
Q 039234 62 VWVFVLLGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 62 Vw~~vlig~~la~f~fWRFQM~ql 85 (94)
+|+.+++++.++.+..| |++.|+
T Consensus 7 ~~~~~v~~vv~~~~~~w-~~~~~~ 29 (112)
T PF14155_consen 7 VIAGAVLVVVAGAVVAW-FGYSQF 29 (112)
T ss_pred EehHHHHHHHHHHHHhH-hhhhhc
Confidence 45555556666667777 666654
No 42
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.04 E-value=38 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEehhHHHHHHHHHHHHHhhHHHHHHHhhhhc
Q 039234 62 VWVFVLLGLGLAYFLFWRFQMSKLVRDINKKT 93 (94)
Q Consensus 62 Vw~~vlig~~la~f~fWRFQM~ql~~nm~kK~ 93 (94)
|.++|+|.+-|.|.++||+-=| ++|.||.
T Consensus 263 iaIliIVLIMvIIYLILRYRRK---KKmkKKl 291 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRK---KKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhhHHH
Confidence 4566677778889999998654 4677764
No 43
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=2.5e+02 Score=23.67 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=36.6
Q ss_pred CeEEEEeeeeh-hhhccCCCCcceeEEEEEecccCCCceEEehhH---------HHHHHHHHHHHHhhHHHHHHH
Q 039234 24 DRAYVLYGRVM-EGLLGNSGREEFSIEEVRSKKENEEENVWVFVL---------LGLGLAYFLFWRFQMSKLVRD 88 (94)
Q Consensus 24 ~R~YvL~g~~~-eg~~g~~~re~F~IeEv~~~kE~e~e~Vw~~vl---------ig~~la~f~fWRFQM~ql~~n 88 (94)
+..+++.++.- |.+....+|..|...-+. .+-+.+.|.+.. +.+.+++|.+||+.-..-..+
T Consensus 129 ~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~---~~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~~~~~~~~r~ 200 (348)
T KOG4628|consen 129 DIHIVFVSVFSGELLSSYAGRTEFECLLIP---LGFDTSPWSILAISLISLLTVVAILVTCFFIYRIRRLIRARN 200 (348)
T ss_pred eeEEEEEeeehHHHHHHhhcccceeeeecc---ccccCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566776654 333332677776655443 256677787665 355667888888765443333
No 44
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=25.08 E-value=2.2e+02 Score=20.51 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=24.0
Q ss_pred eEEEccCCeEEEEeeeehh-hhccCCCCcceeEEEEEecccC
Q 039234 17 SVTVGGEDRAYVLYGRVME-GLLGNSGREEFSIEEVRSKKEN 57 (94)
Q Consensus 17 aV~V~~~~R~YvL~g~~~e-g~~g~~~re~F~IeEv~~~kE~ 57 (94)
++....+++-|..|-.-.. +-....+|+- .|++|.|.++|
T Consensus 244 ~~~~~~~g~~~~~yh~~~~~~~~~~~~R~~-~i~~v~~~~dG 284 (286)
T PF04616_consen 244 SVFKDPDGRWYIVYHARNPGGGGTGGGRST-RIQPVTWDADG 284 (286)
T ss_dssp EEEEETTSEEEEEEEEEETSTSTGTTCEEE-EEEEEEEETTS
T ss_pred CEEECCCCCEEEEEeeccCCCCCCCCCcEE-EEEEEEECCCC
Confidence 4555556666666543333 1122356777 79999997665
No 45
>PRK11677 hypothetical protein; Provisional
Probab=24.29 E-value=44 Score=24.36 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=11.7
Q ss_pred eEEehhHHHHHHHH---HHHHHh
Q 039234 61 NVWVFVLLGLGLAY---FLFWRF 80 (94)
Q Consensus 61 ~Vw~~vlig~~la~---f~fWRF 80 (94)
|.|++.+||+.+.+ |++-||
T Consensus 1 M~W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhh
Confidence 56888777665444 334455
No 46
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.62 E-value=50 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.572 Sum_probs=17.8
Q ss_pred ceEEehhHHHHHHHHHHHHHhhHHHH
Q 039234 60 ENVWVFVLLGLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 60 e~Vw~~vlig~~la~f~fWRFQM~ql 85 (94)
--.|+++||-+ ++++.+|=|+..|=
T Consensus 212 H~~WIiilIIi-IiIIIL~cfKiPQK 236 (258)
T PHA03240 212 HIAWIFIAIII-IIVIILFFFKIPQK 236 (258)
T ss_pred hHhHHHHHHHH-HHHHHHHHHhccHH
Confidence 35799888877 56666666887763
No 47
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.36 E-value=67 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHHHH
Q 039234 70 LGLAYFLFWRFQMSKL 85 (94)
Q Consensus 70 ~~la~f~fWRFQM~ql 85 (94)
+++.||++.|=|-||-
T Consensus 14 ~~i~yF~~iRPQkKr~ 29 (109)
T PRK05886 14 MGGFMYFASRRQRKAM 29 (109)
T ss_pred HHHHHHHHccHHHHHH
Confidence 4556788888887763
No 48
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=22.54 E-value=28 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 039234 71 GLAYFLFWRF 80 (94)
Q Consensus 71 ~la~f~fWRF 80 (94)
++.++++|=|
T Consensus 9 ~vi~~l~~~~ 18 (110)
T PF06480_consen 9 LVILLLFNFF 18 (110)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 49
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.42 E-value=1.2e+02 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred ehhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 039234 64 VFVLLGLGLAYFLFWRFQMSKLVRDINKK 92 (94)
Q Consensus 64 ~~vlig~~la~f~fWRFQM~ql~~nm~kK 92 (94)
.++++|++++---.||+| |...-|+|+
T Consensus 62 fii~~gil~~a~g~~r~~--~~~~amrr~ 88 (120)
T COG2149 62 FLILVGILLAALGALRWQ--RVERAMRRG 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHcC
Confidence 356777888888899998 666777765
No 50
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.35 E-value=1e+02 Score=16.45 Aligned_cols=13 Identities=54% Similarity=0.869 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHH
Q 039234 65 FVLLGLGLAYFLF 77 (94)
Q Consensus 65 ~vlig~~la~f~f 77 (94)
+.|+++|++-+.+
T Consensus 8 ~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 8 LALLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666555555
No 51
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=21.72 E-value=40 Score=27.97 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=15.7
Q ss_pred EEehhHHHHHHHHHHHHH
Q 039234 62 VWVFVLLGLGLAYFLFWR 79 (94)
Q Consensus 62 Vw~~vlig~~la~f~fWR 79 (94)
.|..+++|+++.-+|.||
T Consensus 411 LW~~Lv~gV~vL~~mA~r 428 (429)
T PF13163_consen 411 LWGALVLGVAVLGGMAWR 428 (429)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 688899999999999987
No 52
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.60 E-value=1.3e+02 Score=19.64 Aligned_cols=28 Identities=14% Similarity=0.460 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 039234 65 FVLLGLGLAYFLFWRFQMSKLVRDINKK 92 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ql~~nm~kK 92 (94)
+.+|-+.+.+|++|+|=-+-+.+-|++.
T Consensus 4 ~~~i~Flil~~~l~~~~~~pi~~~l~~R 31 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFLYKPIKKFLDER 31 (132)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888777776666654
No 53
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.60 E-value=1e+02 Score=24.66 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=21.8
Q ss_pred EecccCCCc-eEEehhHHHHHHHHHHHHHhhHHHHHHH
Q 039234 52 RSKKENEEE-NVWVFVLLGLGLAYFLFWRFQMSKLVRD 88 (94)
Q Consensus 52 ~~~kE~e~e-~Vw~~vlig~~la~f~fWRFQM~ql~~n 88 (94)
|--+||-+- -+|-.|+=.+-|++-|.| |||.|=.=
T Consensus 173 R~tSES~NsRvm~Wsv~Q~vvL~~tc~w--QmrhL~~F 208 (215)
T KOG1690|consen 173 RDTSESANSRVMWWSVAQLVVLLVTCIW--QMRHLKSF 208 (215)
T ss_pred HhhhhhhcceeeehhHHHHHHHHHHHHH--HHHHHHHH
Confidence 334454443 345566666677788887 99988543
No 54
>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=77 Score=19.19 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=10.5
Q ss_pred EEccCCeEEEEe
Q 039234 19 TVGGEDRAYVLY 30 (94)
Q Consensus 19 ~V~~~~R~YvL~ 30 (94)
.|+.++|+||+-
T Consensus 16 ivrRkGrv~VIc 27 (38)
T COG0257 16 IVRRKGRVYVIC 27 (38)
T ss_pred EEEecCEEEEEe
Confidence 588999999985
No 55
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=20.83 E-value=95 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhhH
Q 039234 66 VLLGLGLAYFLFWRFQM 82 (94)
Q Consensus 66 vlig~~la~f~fWRFQM 82 (94)
.|..+|.+|+++|++..
T Consensus 35 ~L~~~gt~~~l~~l~~a 51 (56)
T PF02238_consen 35 PLTVAGTSYCLYGLGIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677888999998764
No 56
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.75 E-value=57 Score=19.68 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH-HH
Q 039234 67 LLGLGLAYFLF-WR 79 (94)
Q Consensus 67 lig~~la~f~f-WR 79 (94)
.|.+.|.+|+| ||
T Consensus 23 vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 23 VIIIVLGAFLFFWY 36 (40)
T ss_pred HHHHHHHHHhheEE
Confidence 44445545544 54
No 57
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.67 E-value=1.5e+02 Score=20.88 Aligned_cols=28 Identities=7% Similarity=0.262 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 039234 65 FVLLGLGLAYFLFWRFQMSKLVRDINKK 92 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQM~ql~~nm~kK 92 (94)
+.+|.+.+.+|++++|=-+-+.+-|++.
T Consensus 13 ~~~i~Flil~~ll~~~l~~pi~~~l~~R 40 (164)
T PRK14471 13 WQTILFLILLLLLAKFAWKPILGAVKER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456677778888898888877777653
No 58
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=20.12 E-value=86 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=20.7
Q ss_pred ccCCCceEEehhHHHHHHHHHHHHHhhH
Q 039234 55 KENEEENVWVFVLLGLGLAYFLFWRFQM 82 (94)
Q Consensus 55 kE~e~e~Vw~~vlig~~la~f~fWRFQM 82 (94)
+++.+..=|+|++|.+++..|.+|.+..
T Consensus 150 ~~~~~~~~~lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 150 WSSSDGGSWLFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred CccccCcchhhhHHHHHHHHHHHHHHHh
Confidence 3444556688888888888888887755
No 59
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.07 E-value=61 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=18.3
Q ss_pred CCCceEEehhHHHHHHHHHHHHH
Q 039234 57 NEEENVWVFVLLGLGLAYFLFWR 79 (94)
Q Consensus 57 ~e~e~Vw~~vlig~~la~f~fWR 79 (94)
+.+-++|.+..+...++.|++|-
T Consensus 93 ~sg~~l~~~m~~f~lV~~fi~~~ 115 (118)
T KOG3385|consen 93 RSGISLLCWMAVFSLVAFFILWV 115 (118)
T ss_pred cCCcchHHHHHHHHHHHHHHhhe
Confidence 36677888888888888888884
Done!