Query 039234
Match_columns 94
No_of_seqs 17 out of 19
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p9w_A MAL S 1 allergenic prot 97.5 8.3E-05 2.8E-09 58.8 4.2 46 11-58 281-328 (334)
2 2l2t_A Receptor tyrosine-prote 57.9 6 0.00021 23.3 2.0 17 65-81 21-37 (44)
3 2ks1_B Epidermal growth factor 56.8 6.4 0.00022 23.1 2.0 17 65-81 22-38 (44)
4 2rdd_B UPF0092 membrane protei 54.9 9.1 0.00031 21.1 2.3 17 69-85 12-28 (37)
5 2jwa_A Receptor tyrosine-prote 52.5 8.3 0.00028 22.8 2.0 16 64-79 21-36 (44)
6 3r45_C Holliday junction recog 38.9 13 0.00043 24.8 1.4 14 78-91 28-43 (81)
7 2knc_B Integrin beta-3; transm 34.0 25 0.00084 22.4 2.2 21 60-80 8-34 (79)
8 2ls4_A High affinity copper up 39.5 9 0.00031 20.4 0.0 13 65-77 8-20 (26)
9 2k9j_B Integrin beta-3; transm 24.6 50 0.0017 18.8 2.2 14 68-81 21-34 (43)
10 1iij_A ERBB-2 receptor protein 23.5 15 0.00052 20.8 -0.2 16 64-79 17-32 (35)
11 2w1k_A Putative sortase; pilus 23.4 8.7 0.0003 28.8 -1.6 27 12-38 167-196 (252)
12 3sk7_A Protein SEQA; sequestra 23.0 3.6 0.00012 28.8 -3.5 47 9-65 37-83 (116)
13 4b19_A PEPA1; toxin, toxin apo 20.7 59 0.002 18.0 1.9 13 66-78 11-23 (30)
14 2j7a_C Cytochrome C quinol deh 20.1 36 0.0012 22.9 1.1 22 56-77 6-27 (159)
No 1
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.49 E-value=8.3e-05 Score=58.78 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=39.6
Q ss_pred cccceeeEEE--ccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccCC
Q 039234 11 QEKFATSVTV--GGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENE 58 (94)
Q Consensus 11 ~~~f~taV~V--~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~e 58 (94)
..+|+|++++ ..++++||+++.+.+++.|+ |++|.+++|.++.|+-
T Consensus 281 ~~g~tt~t~~~~~~~~~iYvv~~~f~~~~~g~--r~~f~~~di~~~~~~~ 328 (334)
T 2p9w_A 281 NSGFTAVADYYQGSEQGLYAVSAFFDNGAHGG--RSDYPLYKLDNSIQNF 328 (334)
T ss_dssp SSCEEEEEEEEETTEEEEEEEECCGGGTTTSC--CCCEEEEECCGGGGCC
T ss_pred cCceeEEEEeccccCCeEEEEeeecCCcccCC--cceeechhhhhhhhhh
Confidence 5677777665 66799999999999998877 9999999999999864
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.92 E-value=6 Score=23.35 Aligned_cols=17 Identities=29% Similarity=0.676 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHhh
Q 039234 65 FVLLGLGLAYFLFWRFQ 81 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQ 81 (94)
++++.+++++|+|||.+
T Consensus 21 ~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 21 FILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44556667888999864
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.82 E-value=6.4 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHhh
Q 039234 65 FVLLGLGLAYFLFWRFQ 81 (94)
Q Consensus 65 ~vlig~~la~f~fWRFQ 81 (94)
++++.+++++|+|||-.
T Consensus 22 ~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34445667778888854
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=54.93 E-value=9.1 Score=21.10 Aligned_cols=17 Identities=24% Similarity=0.168 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhHHHH
Q 039234 69 GLGLAYFLFWRFQMSKL 85 (94)
Q Consensus 69 g~~la~f~fWRFQM~ql 85 (94)
-+++-||+.+|=|.||-
T Consensus 12 ~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 12 FGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 34667899999999873
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=52.52 E-value=8.3 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=11.7
Q ss_pred ehhHHHHHHHHHHHHH
Q 039234 64 VFVLLGLGLAYFLFWR 79 (94)
Q Consensus 64 ~~vlig~~la~f~fWR 79 (94)
+++++-+++++|+|+|
T Consensus 21 vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee
Confidence 4566777788888887
No 6
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=38.86 E-value=13 Score=24.82 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.9
Q ss_pred HHhh--HHHHHHHhhh
Q 039234 78 WRFQ--MSKLVRDINK 91 (94)
Q Consensus 78 WRFQ--M~ql~~nm~k 91 (94)
-||| |.||+.+||+
T Consensus 28 ~RFQ~~Mq~lieKYn~ 43 (81)
T 3r45_C 28 RRFQRRMQRLIEKYNQ 43 (81)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4888 8999999985
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.98 E-value=25 Score=22.39 Aligned_cols=21 Identities=33% Similarity=0.814 Sum_probs=14.6
Q ss_pred ceEEehh------HHHHHHHHHHHHHh
Q 039234 60 ENVWVFV------LLGLGLAYFLFWRF 80 (94)
Q Consensus 60 e~Vw~~v------lig~~la~f~fWRF 80 (94)
-++|.++ ++.+||++++.||+
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555 36678888999983
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=39.50 E-value=9 Score=20.43 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHH
Q 039234 65 FVLLGLGLAYFLF 77 (94)
Q Consensus 65 ~vlig~~la~f~f 77 (94)
-|++|+++.||+|
T Consensus 8 avvlGa~~Gyf~F 20 (26)
T 2ls4_A 8 AVAAGAGTGYFLF 20 (26)
Confidence 3678888899887
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=24.58 E-value=50 Score=18.84 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q 039234 68 LGLGLAYFLFWRFQ 81 (94)
Q Consensus 68 ig~~la~f~fWRFQ 81 (94)
+.+|++..+.||+=
T Consensus 21 vliGl~lLliwk~~ 34 (43)
T 2k9j_B 21 LLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45688888999874
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.47 E-value=15 Score=20.80 Aligned_cols=16 Identities=19% Similarity=0.224 Sum_probs=10.6
Q ss_pred ehhHHHHHHHHHHHHH
Q 039234 64 VFVLLGLGLAYFLFWR 79 (94)
Q Consensus 64 ~~vlig~~la~f~fWR 79 (94)
+++++-++++++++||
T Consensus 17 lll~vii~l~~~~~iR 32 (35)
T 1iij_A 17 VLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHhheEEe
Confidence 4555666777777776
No 11
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=23.41 E-value=8.7 Score=28.83 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=15.7
Q ss_pred ccceeeEEEcc---CCeEEEEeeeehhhhc
Q 039234 12 EKFATSVTVGG---EDRAYVLYGRVMEGLL 38 (94)
Q Consensus 12 ~~f~taV~V~~---~~R~YvL~g~~~eg~~ 38 (94)
+.-.|=+|... ...=|+.+|++.+-.-
T Consensus 167 ~~~LTLiTC~p~~~~~~RlIV~a~lv~~~~ 196 (252)
T 2w1k_A 167 KNIMTLITCDPIPTFNKRLLVNFERVAVYQ 196 (252)
T ss_dssp SEEEEEEEEESTTTCCEEEEEEEEEEEEEE
T ss_pred CCEEEEEECCCCCCCCcEEEEEEEEeeecc
Confidence 34455566642 4455778887765443
No 12
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=23.00 E-value=3.6 Score=28.78 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCcccceeeEEEccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccCCCceEEeh
Q 039234 9 LNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVF 65 (94)
Q Consensus 9 ld~~~f~taV~V~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~e~e~Vw~~ 65 (94)
+|++.|+.|-.+.+|+|+|---. +|-++.+| +. .-||+=.+-|-|++
T Consensus 37 ~~p~~F~~a~~i~GR~R~YFA~s--e~~LL~~g-~~-------tkPK~Ip~TpfWVi 83 (116)
T 3sk7_A 37 IDSASFSEATMFKGRKRVYFADN--EQTLLASG-QT-------TKPKAIPNTPFWVI 83 (116)
T ss_dssp HCHHHHHHHHHC----CCCEESS--HHHHHHHC-TT-------SCCEECTTSSCEEC
T ss_pred hCHHHHHHHHHhcCCcceeecCC--HHHHHHcC-CC-------CCCCcCCCCCeeEE
Confidence 57888988888999999996532 44444333 32 23788889999986
No 13
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=20.68 E-value=59 Score=17.96 Aligned_cols=13 Identities=38% Similarity=1.132 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHH
Q 039234 66 VLLGLGLAYFLFW 78 (94)
Q Consensus 66 vlig~~la~f~fW 78 (94)
++.|..+++|-.|
T Consensus 11 visGcivalF~hW 23 (30)
T 4b19_A 11 VISGCAIAFFSYW 23 (30)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999998
No 14
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=20.15 E-value=36 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=9.5
Q ss_pred cCCCceEEehhHHHHHHHHHHH
Q 039234 56 ENEEENVWVFVLLGLGLAYFLF 77 (94)
Q Consensus 56 E~e~e~Vw~~vlig~~la~f~f 77 (94)
.+....+++++++|+.+.++++
T Consensus 6 ~~~~~~~~~~~~~g~~~g~~~~ 27 (159)
T 2j7a_C 6 SRNGPARLKLVLGGATLGVVAL 27 (159)
T ss_dssp --------CCSTTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 3444556777777776666553
Done!