Query 039234
Match_columns 94
No_of_seqs 17 out of 19
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 12:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039234.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039234hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 45.3 5.7 0.00041 20.3 1.7 12 70-81 3-14 (26)
2 d1wjpa3 g.37.1.1 (A:67-107) Zi 26.0 12 0.00089 20.6 1.1 10 74-83 16-25 (41)
3 d1wl7a1 b.67.2.1 (A:2-313) Ara 25.2 45 0.0033 21.7 4.2 37 17-57 272-308 (312)
4 d1szwa_ d.265.1.4 (A:) tRNA ps 17.7 29 0.0021 24.4 2.0 25 42-66 23-48 (341)
5 d1j3ea_ d.228.1.1 (A:) Replica 17.6 4.4 0.00032 26.6 -2.3 47 9-65 35-82 (115)
6 d1q7fa_ b.68.9.1 (A:) Brain tu 15.9 41 0.003 21.4 2.3 16 14-29 24-39 (279)
7 d1yrza2 b.67.2.1 (A:1004-1320) 15.8 1.4E+02 0.01 19.3 5.5 40 17-57 249-290 (317)
8 d1rwia_ b.68.9.1 (A:) Serine/t 13.3 82 0.0059 19.6 3.2 21 9-29 10-30 (260)
9 d1v2ba_ d.107.1.2 (A:) Oxygen- 12.2 84 0.0061 19.6 3.0 24 13-37 129-152 (171)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 12.1 67 0.0049 16.7 2.0 14 65-78 9-22 (33)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=45.26 E-value=5.7 Score=20.26 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhh
Q 039234 70 LGLAYFLFWRFQ 81 (94)
Q Consensus 70 ~~la~f~fWRFQ 81 (94)
+.+++.+||-|-
T Consensus 3 aslaiw~fw~ff 14 (26)
T d1rzhh2 3 ASLAIYSFWIFL 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999883
No 2
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.03 E-value=12 Score=20.55 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.3
Q ss_pred HHHHHHhhHH
Q 039234 74 YFLFWRFQMS 83 (94)
Q Consensus 74 ~f~fWRFQM~ 83 (94)
-|.+||-|+.
T Consensus 16 sfsiwrhqve 25 (41)
T d1wjpa3 16 SFSIWRHQVE 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhe
Confidence 4899999974
No 3
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]}
Probab=25.25 E-value=45 Score=21.70 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=21.8
Q ss_pred eEEEccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccC
Q 039234 17 SVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKEN 57 (94)
Q Consensus 17 aV~V~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~ 57 (94)
|++..+++.-++.|+.-. ..+++....|++|.|.++|
T Consensus 272 s~~~~~~~~~~~yH~~~~----~~~~~R~~~~~~v~w~~dG 308 (312)
T d1wl7a1 272 AVYFSGVSAILVNHAYDA----LKNGEPTLQIRPLYWDDEG 308 (312)
T ss_dssp EEEEETTEEEEEEEEEET----TTTTEEEEEEEECEECTTS
T ss_pred EEEEeCCcEEEEEEeecC----CCCCcEEEEEEEEEECCCC
Confidence 556655555445454321 2244555699999997664
No 4
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]}
Probab=17.66 E-value=29 Score=24.37 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=18.3
Q ss_pred CCcceeEEEEE-ecccCCCceEEehh
Q 039234 42 GREEFSIEEVR-SKKENEEENVWVFV 66 (94)
Q Consensus 42 ~re~F~IeEv~-~~kE~e~e~Vw~~v 66 (94)
-=|+|.++|+- ++.+++++.+|+.|
T Consensus 23 ~peDF~V~E~~~~~~~~~G~~~~~~l 48 (341)
T d1szwa_ 23 NPEDFVVVEDLGFEPDGEGEHILVRI 48 (341)
T ss_dssp SGGGEEEEEECSSCCCSCSSEEEEEE
T ss_pred CCCCceEEeccCCCCCCCcCEEEEEE
Confidence 35899999975 45567788887654
No 5
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=17.60 E-value=4.4 Score=26.63 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=32.5
Q ss_pred CCcccceeeE-EEccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccCCCceEEeh
Q 039234 9 LNQEKFATSV-TVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVF 65 (94)
Q Consensus 9 ld~~~f~taV-~V~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~e~e~Vw~~ 65 (94)
+|++.|.-|. ++.+|+|+|--- =.|-++.+ |+. .-||+=.+-|.|++
T Consensus 35 ~~~~~F~~a~e~i~GR~R~YFA~--s~e~LL~~-g~~-------tkPk~Ip~TpfWVi 82 (115)
T d1j3ea_ 35 LDAQAFAEATESLHGRTRVYFAA--DEQTLLKN-GNQ-------TKPKHVPGTPYWVI 82 (115)
T ss_dssp HCHHHHHHHHHTCBCSSSBCEES--SSHHHHHS-SSS-------CCCEECTTSSCEEC
T ss_pred HCHHHHHHHHHHccCCCCceecC--CHHHHHHc-CCC-------CCCccCCCCCeEEE
Confidence 5778888777 589999999653 24444433 333 23788888999986
No 6
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.94 E-value=41 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=14.6
Q ss_pred ceeeEEEccCCeEEEE
Q 039234 14 FATSVTVGGEDRAYVL 29 (94)
Q Consensus 14 f~taV~V~~~~R~YvL 29 (94)
.|+.|||..++++||.
T Consensus 24 ~P~gvavd~dg~i~Va 39 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVA 39 (279)
T ss_dssp CEEEEEECTTCCEEEE
T ss_pred CccEEEEcCCCCEEEE
Confidence 6999999989999987
No 7
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]}
Probab=15.84 E-value=1.4e+02 Score=19.27 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=24.0
Q ss_pred eEEEccCCeEEEEeeee--hhhhccCCCCcceeEEEEEecccC
Q 039234 17 SVTVGGEDRAYVLYGRV--MEGLLGNSGREEFSIEEVRSKKEN 57 (94)
Q Consensus 17 aV~V~~~~R~YvL~g~~--~eg~~g~~~re~F~IeEv~~~kE~ 57 (94)
|++..+.++-|+.|-+- .++-....+|+- .|++|.|.++|
T Consensus 249 s~~~~~dG~~~~~~h~~~~~~~~~~~~~R~~-~i~~~~w~~DG 290 (317)
T d1yrza2 249 SLVETQNGEWYLAHLCGRPLKGKYCTLGRET-AIQKVNWTEDG 290 (317)
T ss_dssp EEEECTTSCEEEEEEEECCBTTTBCTTCSEE-EEEEEEECTTS
T ss_pred EEEECCCCeEEEEEEEeeCCCCCccCCccEE-EEEEEEECCCC
Confidence 56555667777766322 222222234777 89999997654
No 8
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.28 E-value=82 Score=19.62 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.2
Q ss_pred CCcccceeeEEEccCCeEEEE
Q 039234 9 LNQEKFATSVTVGGEDRAYVL 29 (94)
Q Consensus 9 ld~~~f~taV~V~~~~R~YvL 29 (94)
+|..-.|++||+..++++||.
T Consensus 10 ~~~~~~P~~vavd~dG~i~v~ 30 (260)
T d1rwia_ 10 IDFRLSPSGVAVDSAGNVYVT 30 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEE
T ss_pred CCCcCCCCEEEEcCCCCEEEE
Confidence 344457999999999999987
No 9
>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=12.21 E-value=84 Score=19.64 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=17.1
Q ss_pred cceeeEEEccCCeEEEEeeeehhhh
Q 039234 13 KFATSVTVGGEDRAYVLYGRVMEGL 37 (94)
Q Consensus 13 ~f~taV~V~~~~R~YvL~g~~~eg~ 37 (94)
...++++| .++|+|.|.....|..
T Consensus 129 h~l~~~~v-~~grLYtl~~~~pe~~ 152 (171)
T d1v2ba_ 129 HQLVTATV-NDGKLYICKAQAGDKR 152 (171)
T ss_dssp EEEEEEEE-ETTEEEEEEEEEEGGG
T ss_pred EEEEEEEE-eCCEEEEEEEecCHHH
Confidence 45566777 6689999987766554
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=12.07 E-value=67 Score=16.67 Aligned_cols=14 Identities=43% Similarity=0.866 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHH
Q 039234 65 FVLLGLGLAYFLFW 78 (94)
Q Consensus 65 ~vlig~~la~f~fW 78 (94)
-|+..++|.|..||
T Consensus 9 ~vi~il~l~ilvfw 22 (33)
T d1xmec1 9 AVILVLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35556778888888
Done!