BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039237
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinase 1 OS=Rattus
norvegicus GN=Map3k1 PE=1 SV=1
Length = 1493
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 5 ERLVAC-GTCKNLIHEECWVTWKRS--RGRRAASCVICRGRWRDN 46
E L C C+N +H C W R R C +CR +WR +
Sbjct: 444 ESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWRSH 488
>sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens
GN=MAP3K1 PE=1 SV=4
Length = 1512
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 5 ERLVAC-GTCKNLIHEECWVTWKRS--RGRRAASCVICRGRWRDN 46
E L C C+N +H C W R R C +CR +WR +
Sbjct: 454 ESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWRSH 498
>sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kinase 1 OS=Mus musculus
GN=Map3k1 PE=1 SV=3
Length = 1493
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 5 ERLVAC-GTCKNLIHEECWVTWKRS--RGRRAASCVICRGRWRDN 46
E L C C+N +H C W R R C +CR +WR +
Sbjct: 449 ESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWRSH 493
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 10 CGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
C TCKN H C W RS G +C +CR
Sbjct: 1527 CPTCKNKFHGACLYKWFRSSGNN--TCPLCR 1555
>sp|Q9HB58|SP110_HUMAN Sp110 nuclear body protein OS=Homo sapiens GN=SP110 PE=1 SV=5
Length = 689
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
G +L+ CGTC + HE+C + ++ R SC CR
Sbjct: 543 GGQLLCCGTCPRVFHEDCHIPPVEAK-RMLWSCTFCR 578
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
AC TCK H EC W S + ++C +CR
Sbjct: 1663 ACRTCKKKFHSECLYKWFTSSNK--STCPLCR 1692
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 10 CGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
CGTC++ H C W +S ++ C +CR
Sbjct: 1576 CGTCRHKFHASCLYKWFKS--SNSSRCPLCR 1604
>sp|Q6IQU7|INT12_DANRE Integrator complex subunit 12 OS=Danio rerio GN=ints12 PE=2 SV=1
Length = 479
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 3 SGERLVACGTCKNLIHEEC 21
SG +LV C C NL H+EC
Sbjct: 174 SGNQLVECQECHNLYHQEC 192
>sp|O43189|PHF1_HUMAN PHD finger protein 1 OS=Homo sapiens GN=PHF1 PE=1 SV=3
Length = 567
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
G RLV+C C++ H++C V + G + +CR
Sbjct: 101 GNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCR 137
>sp|Q9Z1B8|PHF1_MOUSE PHD finger protein 1 OS=Mus musculus GN=Phf1 PE=1 SV=2
Length = 559
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
G RLV+C C++ H++C V + G + +CR
Sbjct: 101 GNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGASWVCR 137
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
AC TCK H C W S + ++C +CR
Sbjct: 1734 ACRTCKKKFHSACLYKWFTSSNK--STCPLCR 1763
>sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1
SV=6
Length = 1766
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
AC TCK H C W S + ++C +CR
Sbjct: 1733 ACRTCKKKFHSACLYKWFTSSNK--STCPLCR 1762
>sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans
GN=Y54E10A.11 PE=3 SV=1
Length = 1446
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 8 VACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43
+ C CKN H C W S + ++C +CR +
Sbjct: 1412 IKCKQCKNKFHSNCLYKWFESSNQ--STCPLCRNNF 1445
>sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3
SV=1
Length = 1766
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40
AC TCK H C W S + ++C +CR
Sbjct: 1733 ACRTCKKKFHSACLYKWFTSSNK--STCPLCR 1762
>sp|Q68FR3|INT12_RAT Integrator complex subunit 12 OS=Rattus norvegicus GN=Ints12 PE=2
SV=1
Length = 461
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1 MGSGERLVACGTCKNLIHEEC 21
+ SG +LV C C NL H++C
Sbjct: 169 VASGNQLVECQECHNLYHQDC 189
>sp|Q9D168|INT12_MOUSE Integrator complex subunit 12 OS=Mus musculus GN=Ints12 PE=1 SV=1
Length = 461
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1 MGSGERLVACGTCKNLIHEEC 21
+ SG +LV C C NL H++C
Sbjct: 169 VASGNQLVECQECHNLYHQDC 189
>sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos taurus GN=INTS12 PE=2 SV=1
Length = 462
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1 MGSGERLVACGTCKNLIHEEC 21
+ SG +LV C C NL H++C
Sbjct: 170 VASGNQLVECQECHNLYHQDC 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,638,516
Number of Sequences: 539616
Number of extensions: 1254012
Number of successful extensions: 2729
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2718
Number of HSP's gapped (non-prelim): 26
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)