Query 039237
Match_columns 98
No_of_seqs 109 out of 117
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct0_A Non-SMC element 1 homol 98.9 2.4E-10 8.2E-15 74.2 1.9 38 8-47 29-66 (74)
2 1v87_A Deltex protein 2; ring- 98.5 4E-08 1.4E-12 64.4 2.6 36 11-46 59-95 (114)
3 2ecl_A Ring-box protein 2; RNF 98.5 3.8E-08 1.3E-12 62.4 2.1 31 11-45 46-76 (81)
4 3dpl_R Ring-box protein 1; ubi 98.3 1.2E-07 4.2E-12 64.1 1.5 30 11-44 71-100 (106)
5 2kiz_A E3 ubiquitin-protein li 98.3 2.4E-07 8.1E-12 55.8 2.2 32 11-46 33-64 (69)
6 2d8s_A Cellular modulator of i 98.3 2.2E-07 7.6E-12 60.1 1.4 34 11-46 38-71 (80)
7 1iym_A EL5; ring-H2 finger, ub 98.3 1.7E-07 5.8E-12 54.1 0.7 33 7-43 21-53 (55)
8 2ep4_A Ring finger protein 24; 98.2 4.9E-07 1.7E-11 55.1 2.7 31 12-46 35-65 (74)
9 2l0b_A E3 ubiquitin-protein li 98.2 2.8E-07 9.4E-12 59.2 1.6 31 11-45 59-89 (91)
10 2xeu_A Ring finger protein 4; 98.2 6.4E-07 2.2E-11 52.4 2.3 32 11-46 26-57 (64)
11 3nw0_A Non-structural maintena 98.2 4.6E-07 1.6E-11 68.7 2.1 38 8-47 194-231 (238)
12 4a0k_B E3 ubiquitin-protein li 98.2 2.2E-07 7.4E-12 64.5 0.0 31 11-45 82-112 (117)
13 3ng2_A RNF4, snurf, ring finge 98.2 7.1E-07 2.4E-11 53.5 2.2 33 10-46 32-64 (71)
14 2ecm_A Ring finger and CHY zin 98.1 7.9E-07 2.7E-11 51.1 1.9 33 8-44 22-54 (55)
15 2ea6_A Ring finger protein 4; 98.1 1.1E-06 3.7E-11 52.1 2.0 30 11-44 38-67 (69)
16 1x4j_A Ring finger protein 38; 98.1 6.2E-07 2.1E-11 55.1 0.9 33 9-45 40-72 (75)
17 2ect_A Ring finger protein 126 98.0 5.2E-07 1.8E-11 55.5 -0.2 32 12-47 35-66 (78)
18 2ct2_A Tripartite motif protei 98.0 2.6E-06 8.8E-11 52.8 2.5 34 12-46 36-69 (88)
19 2yur_A Retinoblastoma-binding 97.9 3.3E-06 1.1E-10 52.1 1.9 33 12-46 33-65 (74)
20 1chc_A Equine herpes virus-1 r 97.9 2.4E-06 8.4E-11 51.0 0.8 31 11-45 22-52 (68)
21 1vyx_A ORF K3, K3RING; zinc-bi 97.9 6.1E-06 2.1E-10 50.8 2.3 31 12-44 28-58 (60)
22 3lrq_A E3 ubiquitin-protein li 97.9 9.3E-06 3.2E-10 52.8 3.2 37 7-46 35-71 (100)
23 2ecn_A Ring finger protein 141 97.8 2.2E-06 7.5E-11 51.6 -0.1 32 11-46 30-61 (70)
24 2ecw_A Tripartite motif-contai 97.8 9.2E-06 3.1E-10 49.5 2.6 35 12-46 36-72 (85)
25 2ysl_A Tripartite motif-contai 97.8 4.1E-06 1.4E-10 50.5 1.0 34 12-46 37-70 (73)
26 2djb_A Polycomb group ring fin 97.8 1.2E-05 4.1E-10 49.0 2.8 33 11-47 32-64 (72)
27 2ecy_A TNF receptor-associated 97.8 9.1E-06 3.1E-10 48.6 2.2 33 11-46 31-63 (66)
28 4ayc_A E3 ubiquitin-protein li 97.7 7.2E-06 2.5E-10 55.9 1.2 31 12-46 70-100 (138)
29 3k1l_B Fancl; UBC, ring, RWD, 97.7 6.5E-06 2.2E-10 67.7 0.3 38 7-44 326-372 (381)
30 1g25_A CDK-activating kinase a 97.6 2.2E-05 7.4E-10 46.9 2.2 33 11-46 24-56 (65)
31 2ecv_A Tripartite motif-contai 97.6 2.2E-05 7.6E-10 47.8 2.2 36 12-47 36-73 (85)
32 2csy_A Zinc finger protein 183 97.6 1.9E-05 6.5E-10 48.9 1.7 29 12-44 32-60 (81)
33 1jm7_A BRCA1, breast cancer ty 97.6 2E-05 6.7E-10 50.8 1.7 35 12-47 38-72 (112)
34 4ap4_A E3 ubiquitin ligase RNF 97.6 2.3E-05 7.7E-10 51.0 1.8 32 11-46 95-126 (133)
35 4ap4_A E3 ubiquitin ligase RNF 97.6 2.7E-05 9.3E-10 50.7 2.0 33 11-47 30-62 (133)
36 2d8t_A Dactylidin, ring finger 97.6 9.4E-06 3.2E-10 49.3 -0.3 30 12-45 32-61 (71)
37 2y43_A E3 ubiquitin-protein li 97.5 2.4E-05 8.1E-10 50.1 1.4 31 11-45 39-69 (99)
38 3fl2_A E3 ubiquitin-protein li 97.5 3.2E-05 1.1E-09 51.5 1.7 31 12-45 69-99 (124)
39 3ztg_A E3 ubiquitin-protein li 97.5 4.1E-05 1.4E-09 48.2 1.9 31 12-44 31-61 (92)
40 2ckl_B Ubiquitin ligase protei 97.5 3.6E-05 1.2E-09 53.4 1.7 34 9-45 69-102 (165)
41 1t1h_A Gspef-atpub14, armadill 97.5 4.2E-05 1.4E-09 46.8 1.8 32 12-46 25-56 (78)
42 2egp_A Tripartite motif-contai 97.4 1.1E-05 3.8E-10 49.1 -1.0 35 12-46 29-66 (79)
43 2ckl_A Polycomb group ring fin 97.3 5.5E-05 1.9E-09 49.2 1.3 32 11-46 32-63 (108)
44 2ysj_A Tripartite motif-contai 97.3 7.6E-05 2.6E-09 44.0 1.7 27 12-39 37-63 (63)
45 1rmd_A RAG1; V(D)J recombinati 97.3 8.1E-05 2.8E-09 48.8 1.8 33 11-46 39-71 (116)
46 3hct_A TNF receptor-associated 97.2 0.00012 4.1E-09 48.5 1.6 32 12-46 35-66 (118)
47 2ecj_A Tripartite motif-contai 97.1 0.00011 3.8E-09 42.2 0.9 27 12-39 32-58 (58)
48 1z6u_A NP95-like ring finger p 97.1 0.00017 5.9E-09 50.5 2.1 33 11-46 94-126 (150)
49 3l11_A E3 ubiquitin-protein li 96.9 5.5E-05 1.9E-09 49.6 -1.7 31 12-45 32-62 (115)
50 1e4u_A Transcriptional repress 96.7 0.00071 2.4E-08 43.1 2.3 33 12-47 32-64 (78)
51 2y1n_A E3 ubiquitin-protein li 96.6 0.00073 2.5E-08 55.1 1.9 32 11-45 348-379 (389)
52 3knv_A TNF receptor-associated 96.5 0.00041 1.4E-08 48.2 0.2 29 12-43 48-76 (141)
53 3hcs_A TNF receptor-associated 96.1 0.002 6.7E-08 44.7 1.6 32 12-46 35-66 (170)
54 1jm7_B BARD1, BRCA1-associated 96.1 0.00044 1.5E-08 45.7 -1.7 29 12-46 40-68 (117)
55 4ic3_A E3 ubiquitin-protein li 95.7 0.0015 5.1E-08 40.3 -0.3 25 12-44 41-66 (74)
56 2kr4_A Ubiquitin conjugation f 94.9 0.011 3.8E-07 37.5 1.8 30 12-45 31-60 (85)
57 2c2l_A CHIP, carboxy terminus 94.7 0.0071 2.4E-07 43.4 0.6 31 12-45 225-255 (281)
58 2vje_B MDM4 protein; proto-onc 94.7 0.011 3.7E-07 35.6 1.3 30 11-44 25-55 (63)
59 2gmg_A Hypothetical protein PF 94.6 0.011 3.7E-07 41.1 1.2 30 9-47 69-98 (105)
60 1bor_A Transcription factor PM 94.5 0.0025 8.5E-08 37.4 -1.9 28 12-46 23-50 (56)
61 2yu4_A E3 SUMO-protein ligase 94.2 0.015 5E-07 37.4 1.2 31 12-42 25-59 (94)
62 3v43_A Histone acetyltransfera 94.2 0.023 7.8E-07 38.0 2.2 23 2-24 21-43 (112)
63 2vje_A E3 ubiquitin-protein li 94.2 0.015 5.3E-07 35.0 1.2 29 12-44 27-56 (64)
64 2kre_A Ubiquitin conjugation f 94.1 0.011 3.8E-07 38.8 0.5 30 12-45 46-75 (100)
65 2lri_C Autoimmune regulator; Z 94.1 0.0099 3.4E-07 37.3 0.2 40 3-42 20-59 (66)
66 1wgm_A Ubiquitin conjugation f 93.8 0.017 5.9E-07 37.8 0.9 31 11-45 38-69 (98)
67 1wim_A KIAA0161 protein; ring 93.7 0.024 8.3E-07 35.8 1.5 31 12-42 25-61 (94)
68 2ecg_A Baculoviral IAP repeat- 92.3 0.04 1.4E-06 33.6 0.9 27 11-45 41-68 (75)
69 2kwj_A Zinc finger protein DPF 91.6 0.011 3.8E-07 39.8 -2.4 24 2-25 18-41 (114)
70 1f62_A Transcription factor WS 90.8 0.044 1.5E-06 31.7 -0.0 39 3-41 11-49 (51)
71 2ysm_A Myeloid/lymphoid or mix 90.7 0.015 5E-07 38.5 -2.5 36 5-40 20-55 (111)
72 2f42_A STIP1 homology and U-bo 90.2 0.12 4.1E-06 37.8 1.9 31 12-45 123-153 (179)
73 2l5u_A Chromodomain-helicase-D 89.1 0.082 2.8E-06 32.1 0.2 39 4-42 20-58 (61)
74 1wil_A KIAA1045 protein; ring 87.8 0.15 5E-06 34.7 0.8 37 5-41 27-75 (89)
75 2yho_A E3 ubiquitin-protein li 87.1 0.074 2.5E-06 33.3 -0.9 26 12-45 35-61 (79)
76 3t6p_A Baculoviral IAP repeat- 86.2 0.056 1.9E-06 42.8 -2.3 25 12-44 312-337 (345)
77 3o36_A Transcription intermedi 84.9 0.057 1.9E-06 38.3 -2.6 42 3-44 12-53 (184)
78 3u5n_A E3 ubiquitin-protein li 84.7 0.051 1.8E-06 39.4 -3.0 41 4-44 16-56 (207)
79 3htk_C E3 SUMO-protein ligase 83.1 0.3 1E-05 38.3 0.6 33 11-45 198-232 (267)
80 1mm2_A MI2-beta; PHD, zinc fin 82.5 0.046 1.6E-06 33.2 -3.4 39 4-42 18-56 (61)
81 2ea5_A Cell growth regulator w 80.5 0.29 9.9E-06 29.8 -0.3 26 12-45 32-58 (68)
82 2puy_A PHD finger protein 21A; 79.3 0.066 2.3E-06 32.1 -3.4 40 4-43 14-53 (60)
83 3ql9_A Transcriptional regulat 79.0 1.6 5.4E-05 30.7 3.1 40 3-42 65-111 (129)
84 2ysm_A Myeloid/lymphoid or mix 78.4 0.11 3.6E-06 34.2 -3.0 40 3-42 65-104 (111)
85 2ku3_A Bromodomain-containing 76.5 0.99 3.4E-05 28.3 1.3 38 3-42 29-66 (71)
86 3shb_A E3 ubiquitin-protein li 75.7 0.13 4.6E-06 33.0 -3.0 39 4-42 38-77 (77)
87 2yql_A PHD finger protein 21A; 75.3 0.086 2.9E-06 31.3 -3.7 38 4-41 18-55 (56)
88 2k16_A Transcription initiatio 75.1 0.32 1.1E-05 29.9 -1.2 38 5-42 31-68 (75)
89 2ct7_A Ring finger protein 31; 74.8 0.76 2.6E-05 29.2 0.5 14 4-17 22-35 (86)
90 3vk6_A E3 ubiquitin-protein li 74.6 1.3 4.6E-05 30.3 1.7 44 13-59 20-77 (101)
91 1xwh_A Autoimmune regulator; P 73.7 0.11 3.9E-06 31.8 -3.5 39 4-42 17-55 (66)
92 2yt5_A Metal-response element- 73.7 0.4 1.4E-05 28.8 -1.0 38 5-42 21-61 (66)
93 2bay_A PRE-mRNA splicing facto 71.6 1.4 4.8E-05 26.4 1.1 32 11-46 20-51 (61)
94 3v43_A Histone acetyltransfera 70.9 0.27 9.4E-06 32.7 -2.5 37 5-41 75-111 (112)
95 2lbm_A Transcriptional regulat 70.7 2.5 8.4E-05 30.1 2.4 39 3-41 71-116 (142)
96 1wev_A Riken cDNA 1110020M19; 70.1 0.57 1.9E-05 30.3 -1.0 40 5-44 31-74 (88)
97 1fp0_A KAP-1 corepressor; PHD 68.3 0.35 1.2E-05 32.1 -2.4 39 4-42 34-72 (88)
98 2l43_A N-teminal domain from h 68.0 1.5 5E-05 28.4 0.6 39 4-44 39-77 (88)
99 2ro1_A Transcription intermedi 67.0 0.37 1.3E-05 34.8 -2.6 42 3-44 10-51 (189)
100 3asl_A E3 ubiquitin-protein li 64.6 0.4 1.4E-05 29.9 -2.5 40 3-42 29-69 (70)
101 2kdx_A HYPA, hydrogenase/ureas 64.1 2 6.8E-05 28.6 0.7 30 5-44 71-101 (119)
102 2e6s_A E3 ubiquitin-protein li 63.1 0.42 1.4E-05 30.5 -2.7 39 3-41 37-76 (77)
103 1p91_A Ribosomal RNA large sub 57.0 3.5 0.00012 28.8 1.0 11 48-58 29-39 (269)
104 2d9k_A FLN29 gene product; zin 55.5 3.9 0.00013 24.4 0.9 40 4-43 14-53 (75)
105 2lv9_A Histone-lysine N-methyl 54.8 1.5 5.1E-05 28.7 -1.1 38 4-42 39-76 (98)
106 1ptq_A Protein kinase C delta 53.5 4 0.00014 22.7 0.7 17 7-23 28-44 (50)
107 3na7_A HP0958; flagellar bioge 52.1 6.7 0.00023 29.0 1.9 35 9-45 200-234 (256)
108 3ask_A E3 ubiquitin-protein li 51.6 1.1 3.8E-05 34.2 -2.5 39 4-42 186-225 (226)
109 2vnf_A ING 4, P29ING4, inhibit 50.1 1.4 4.8E-05 26.5 -1.7 35 5-41 21-58 (60)
110 4gne_A Histone-lysine N-methyl 50.1 2.4 8.3E-05 28.6 -0.7 38 3-42 23-62 (107)
111 2e6r_A Jumonji/ARID domain-con 49.9 0.35 1.2E-05 31.6 -4.9 39 4-42 28-66 (92)
112 2ku7_A MLL1 PHD3-CYP33 RRM chi 47.5 15 0.0005 23.2 2.8 35 8-42 3-44 (140)
113 2con_A RUH-035 protein, NIN on 46.9 5.6 0.00019 25.9 0.7 14 3-16 26-39 (79)
114 3c6w_A P28ING5, inhibitor of g 44.2 2.1 7E-05 25.8 -1.7 35 5-41 20-57 (59)
115 3uej_A NPKC-delta, protein kin 43.6 7 0.00024 23.2 0.7 19 6-24 36-54 (65)
116 2ri7_A Nucleosome-remodeling f 41.3 6.1 0.00021 27.2 0.2 38 5-42 21-59 (174)
117 2epq_A POZ-, at HOOK-, and zin 41.0 20 0.0007 18.0 2.3 35 5-39 8-44 (45)
118 1zfo_A LAsp-1; LIM domain, zin 40.5 2.2 7.7E-05 22.6 -1.7 8 15-22 24-31 (31)
119 2lcq_A Putative toxin VAPC6; P 40.4 3.7 0.00013 28.2 -1.0 27 7-43 132-158 (165)
120 3tdg_A DSBG, putative uncharac 40.1 4.1 0.00014 31.5 -1.0 13 33-45 156-168 (273)
121 1twf_L ABC10-alpha, DNA-direct 39.7 7.9 0.00027 24.4 0.5 25 6-41 27-53 (70)
122 2eod_A TNF receptor-associated 38.7 23 0.00077 19.5 2.4 40 5-44 8-48 (66)
123 1rfh_A RAS association (ralgds 38.5 5.6 0.00019 23.6 -0.3 16 8-23 37-52 (59)
124 1vd4_A Transcription initiatio 38.2 16 0.00056 20.3 1.7 42 4-46 11-52 (62)
125 1y8f_A UNC-13 homolog A, MUNC1 36.5 9.4 0.00032 22.8 0.5 18 7-24 41-58 (66)
126 2ctd_A Zinc finger protein 512 35.9 20 0.0007 22.0 2.0 39 7-45 34-74 (96)
127 1wen_A Inhibitor of growth fam 35.6 4.1 0.00014 25.3 -1.3 36 5-42 27-65 (71)
128 1faq_A RAF-1; transferase, ser 35.1 4.9 0.00017 22.7 -1.0 16 8-23 28-43 (52)
129 2db6_A SH3 and cysteine rich d 32.5 2.9 9.9E-05 25.8 -2.4 16 8-23 46-61 (74)
130 1l8d_A DNA double-strand break 32.3 9.7 0.00033 24.4 0.0 12 8-19 48-59 (112)
131 3h0g_L DNA-directed RNA polyme 29.4 15 0.0005 23.0 0.5 30 6-44 20-49 (63)
132 1wep_A PHF8; structural genomi 29.1 19 0.00064 22.2 1.0 38 5-42 25-63 (79)
133 2vrw_B P95VAV, VAV1, proto-onc 29.1 12 0.00039 28.7 -0.0 18 6-23 373-390 (406)
134 2g6q_A Inhibitor of growth pro 28.5 5.2 0.00018 24.2 -1.7 34 6-41 23-59 (62)
135 2jz8_A Uncharacterized protein 28.2 15 0.00053 24.4 0.5 17 31-47 46-62 (87)
136 2row_A RHO-associated protein 28.2 27 0.00094 22.5 1.7 18 7-24 54-71 (84)
137 1t07_A Hypothetical UPF0269 pr 26.1 36 0.0012 22.9 2.0 28 2-29 1-48 (94)
138 4dvc_A Thiol:disulfide interch 24.9 13 0.00043 24.1 -0.4 10 33-42 30-39 (184)
139 1k81_A EIF-2-beta, probable tr 24.6 19 0.00066 19.8 0.4 10 34-43 1-10 (36)
140 3gv1_A Disulfide interchange p 24.5 9.8 0.00033 25.8 -1.1 13 33-45 23-35 (147)
141 2epr_A POZ-, at HOOK-, and zin 24.3 52 0.0018 16.7 2.1 36 5-40 10-47 (48)
142 3rsn_A SET1/ASH2 histone methy 24.2 9.3 0.00032 28.2 -1.3 18 6-23 19-36 (177)
143 2l7x_A Envelope glycoprotein; 24.1 10 0.00036 24.9 -0.9 35 8-47 9-44 (77)
144 2fnf_X Putative RAS effector N 24.1 6.4 0.00022 24.4 -1.9 16 8-23 50-65 (72)
145 2jrr_A Uncharacterized protein 24.0 15 0.00052 23.2 -0.1 16 31-46 38-53 (67)
146 1weu_A Inhibitor of growth fam 23.3 7.7 0.00026 25.5 -1.7 35 6-42 48-85 (91)
147 2drp_A Protein (tramtrack DNA- 23.3 58 0.002 17.4 2.3 40 5-44 8-51 (66)
148 1v58_A Thiol:disulfide interch 23.0 11 0.00038 26.9 -1.1 13 33-45 106-118 (241)
149 2enz_A NPKC-theta, protein kin 22.9 13 0.00045 22.0 -0.6 17 8-24 41-57 (65)
150 1t3b_A Thiol:disulfide interch 22.5 14 0.00048 25.8 -0.6 13 33-45 95-107 (211)
151 3uk3_C Zinc finger protein 217 22.2 55 0.0019 16.9 2.0 37 8-44 5-43 (57)
152 3ky9_A Proto-oncogene VAV; cal 21.9 13 0.00043 30.3 -1.1 19 6-24 545-563 (587)
153 1pft_A TFIIB, PFTFIIBN; N-term 21.9 28 0.00095 19.5 0.7 34 6-47 4-38 (50)
154 1eej_A Thiol:disulfide interch 21.8 15 0.00051 25.6 -0.6 13 33-45 95-107 (216)
155 2enn_A NPKC-theta, protein kin 21.7 17 0.00056 22.5 -0.3 18 7-24 51-68 (77)
156 2en8_A Zinc finger protein 224 21.7 84 0.0029 15.4 2.6 35 5-39 10-46 (46)
157 1x5w_A Zinc finger protein 64, 21.6 1.1E+02 0.0037 16.6 3.3 43 3-45 5-49 (70)
158 2lce_A B-cell lymphoma 6 prote 21.5 88 0.003 17.2 2.9 42 4-45 14-57 (74)
159 2yuu_A NPKC-delta, protein kin 21.2 12 0.00041 23.3 -1.1 18 7-24 45-62 (83)
160 2em5_A ZFP-95, zinc finger pro 21.1 85 0.0029 15.6 2.5 35 5-39 10-46 (46)
161 1x4i_A Inhibitor of growth pro 20.9 20 0.00069 22.0 -0.0 35 6-42 18-55 (70)
162 2eoq_A Zinc finger protein 224 20.8 90 0.0031 15.4 2.6 33 7-39 12-46 (46)
163 1we9_A PHD finger family prote 20.7 4.9 0.00017 23.7 -2.9 36 7-42 22-58 (64)
164 2jvm_A Uncharacterized protein 20.5 22 0.00075 23.3 0.1 15 31-45 51-65 (80)
165 1wee_A PHD finger family prote 20.5 5.1 0.00017 24.4 -2.9 37 6-42 30-66 (72)
166 1weq_A PHD finger protein 7; s 20.2 14 0.00047 24.4 -1.0 34 5-41 44-78 (85)
167 3msz_A Glutaredoxin 1; alpha-b 20.0 19 0.00066 20.5 -0.3 12 33-44 11-22 (89)
No 1
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=74.23 Aligned_cols=38 Identities=24% Similarity=0.594 Sum_probs=32.9
Q ss_pred eecccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 8 VACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 8 VwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
..|.+|++.||..|+++|++++. ..+||+||++|....
T Consensus 29 ~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 29 QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEI 66 (74)
T ss_dssp EECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCC
T ss_pred CccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCC
Confidence 46889999999999999998864 478999999999653
No 2
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.51 E-value=4e-08 Score=64.36 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=30.3
Q ss_pred ccccchhHHHHHHHHHHhcC-CCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRG-RRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~-~~~vtCp~CRs~W~~~ 46 (98)
..||+.||.+|+.+|.+... .+..+||+||++|...
T Consensus 59 ~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 67999999999999997643 3468999999999854
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.8e-08 Score=62.42 Aligned_cols=31 Identities=26% Similarity=0.857 Sum_probs=27.7
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..||+.||++|+++|.+++ .+||+||++|..
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQN----NRCPLCQQDWVV 76 (81)
T ss_dssp ETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCE
T ss_pred CCCCCccChHHHHHHHHhC----CCCCCcCCCcch
Confidence 5799999999999999875 589999999973
No 4
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.34 E-value=1.2e-07 Score=64.13 Aligned_cols=30 Identities=23% Similarity=0.767 Sum_probs=27.4
Q ss_pred ccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
..||+.||..|+.+|.++ ..+||+||++|.
T Consensus 71 ~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp ETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred cccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 579999999999999987 378999999997
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.31 E-value=2.4e-07 Score=55.85 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=28.0
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||..|+.+|...+ .+||+||+++...
T Consensus 33 ~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 33 LPCMHLFHQVCVDQWLITN----KKCPICRVDIEAQ 64 (69)
T ss_dssp CTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCSC
T ss_pred eCCCCHHHHHHHHHHHHcC----CCCcCcCccccCc
Confidence 4699999999999999884 4799999999854
No 6
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.2e-07 Score=60.10 Aligned_cols=34 Identities=18% Similarity=0.571 Sum_probs=28.7
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.+.++.||.+|+++|...++ ..+||+||.++...
T Consensus 38 ~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 38 TGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp CSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 34469999999999999874 57999999999854
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.25 E-value=1.7e-07 Score=54.13 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=27.1
Q ss_pred eeecccccchhHHHHHHHHHHhcCCCCcccccccccc
Q 039237 7 LVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W 43 (98)
++.-..||+.||.+|+++|.+. ..+||+||++.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 53 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTV 53 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCS
T ss_pred eEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEe
Confidence 3444569999999999999876 36799999875
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.9e-07 Score=55.08 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=27.4
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.||..|+++|.+.+ .+||+||.+....
T Consensus 35 ~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 35 PCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQL 65 (74)
T ss_dssp TTTEEEEHHHHHHHHHHC----SBCTTTCCBCSSC
T ss_pred CCCCEecHHHHHHHHHcC----CcCCCcCcccccc
Confidence 699999999999999885 4899999998754
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.24 E-value=2.8e-07 Score=59.25 Aligned_cols=31 Identities=23% Similarity=0.718 Sum_probs=26.9
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
-.||+.||..|+.+|.+.+ .+||+||.++..
T Consensus 59 l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 59 LPCHHYFHKPCVSIWLQKS----GTCPVCRCMFPP 89 (91)
T ss_dssp ETTTEEEEHHHHHHHHTTT----CBCTTTCCBSSC
T ss_pred cCCCChHHHHHHHHHHHcC----CcCcCcCccCCC
Confidence 3599999999999999764 589999999874
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.20 E-value=6.4e-07 Score=52.45 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=28.3
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||.+|+++|.+++ .+||+||++....
T Consensus 26 ~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 26 TECGHVFCSQCLRDSLKNA----NTCPTCRKKINHK 57 (64)
T ss_dssp ETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTTT
T ss_pred CCCCCchhHHHHHHHHHcC----CCCCCCCccCCcc
Confidence 5899999999999999883 6899999998754
No 11
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.19 E-value=4.6e-07 Score=68.69 Aligned_cols=38 Identities=24% Similarity=0.594 Sum_probs=33.1
Q ss_pred eecccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 8 VACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 8 VwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
..|..|++.||..|+++|.++++ ..+||.|+.+|+...
T Consensus 194 ~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 194 QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEI 231 (238)
T ss_dssp EECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCC
T ss_pred cccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCC
Confidence 67878999999999999998753 588999999999753
No 12
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.18 E-value=2.2e-07 Score=64.49 Aligned_cols=31 Identities=26% Similarity=0.751 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..|++.||.+|+.+|.+++ .+||+||++|.-
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCCCeeee
Confidence 4899999999999999884 689999999973
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.17 E-value=7.1e-07 Score=53.54 Aligned_cols=33 Identities=15% Similarity=0.487 Sum_probs=28.8
Q ss_pred cccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 10 CGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 10 C~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
-..||+.||++|+++|.+.+ .+||+||.+....
T Consensus 32 ~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLKNA----NTCPTCRKKINHK 64 (71)
T ss_dssp ECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCCC
T ss_pred eCCCCChHhHHHHHHHHHcC----CCCCCCCCccChh
Confidence 35899999999999999874 5899999998754
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.14 E-value=7.9e-07 Score=51.10 Aligned_cols=33 Identities=21% Similarity=0.563 Sum_probs=28.1
Q ss_pred eecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 8 VACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 8 VwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
+.-..||+.||.+|+++|.+.+ .+||+||++..
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 3445799999999999999985 78999998764
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.1e-06 Score=52.13 Aligned_cols=30 Identities=17% Similarity=0.521 Sum_probs=26.6
Q ss_pred ccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
..||+.||.+|+++|...+ .+||+||.+..
T Consensus 38 ~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 38 TECGHVFCSQCLRDSLKNA----NTCPTCRKKIN 67 (69)
T ss_dssp CSSSCEEEHHHHHHHHHHC----SSCTTTCCCCC
T ss_pred CCCCChhcHHHHHHHHHcC----CCCCCCCCccC
Confidence 5799999999999999873 68999999865
No 16
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=6.2e-07 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=27.7
Q ss_pred ecccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 9 wC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
....||+.||.+|+++|.+.+ .+||+||++...
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp EEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred EEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 334599999999999999874 589999998764
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.04 E-value=5.2e-07 Score=55.48 Aligned_cols=32 Identities=31% Similarity=0.873 Sum_probs=27.9
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
.||+.||.+|+.+|.+.+ .+||+||.++....
T Consensus 35 ~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLEQH----DSCPVCRKSLTGQN 66 (78)
T ss_dssp TTSCEEETTTTHHHHTTT----CSCTTTCCCCCCSC
T ss_pred CCCCeecHHHHHHHHHcC----CcCcCcCCccCCcc
Confidence 699999999999999764 68999999998654
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=2.6e-06 Score=52.78 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.6
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.||..|+++|.+.+. ...+||+||.+...+
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred CCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 6999999999999999863 368999999998764
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.93 E-value=3.3e-06 Score=52.06 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.9
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.||+.|+++|.+.++ ..+||.||++....
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 33 CCGNSYCDECIRTALLESD--EHTCPTCHQNDVSP 65 (74)
T ss_dssp SSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCCT
T ss_pred CCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCCc
Confidence 4999999999999999863 47899999986543
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.89 E-value=2.4e-06 Score=51.04 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=27.1
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..||+.||..|+.+|.+.+ .+||+||++...
T Consensus 22 ~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 22 LPCLHAFCYVCITRWIRQN----PTCPLCKVPVES 52 (68)
T ss_dssp TTTTEEESTTHHHHHHHHS----CSTTTTCCCCCC
T ss_pred cCCCCeeHHHHHHHHHhCc----CcCcCCChhhHh
Confidence 4699999999999999864 689999999864
No 21
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.86 E-value=6.1e-06 Score=50.81 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=26.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
+.-+.||.+|+++|...++ ..+||+||++..
T Consensus 28 gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 28 GELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 3345999999999999875 589999999875
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.86 E-value=9.3e-06 Score=52.80 Aligned_cols=37 Identities=24% Similarity=0.529 Sum_probs=31.4
Q ss_pred eeecccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 7 LVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
-+.|..||+.||..|+.+|.+.+. .+||.||.+...+
T Consensus 35 p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 35 ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQLR 71 (100)
T ss_dssp EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCHH
Confidence 456678999999999999999863 7899999998643
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2.2e-06 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=27.4
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||++|+.+|... ..+||+||.+....
T Consensus 30 ~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 30 LPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp ETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred cCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 369999999999999883 57899999998754
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.83 E-value=9.2e-06 Score=49.51 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.6
Q ss_pred cccchhHHHHHHHHHHhcC--CCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRG--RRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~--~~~vtCp~CRs~W~~~ 46 (98)
.||+.||..|+.+|..... .+..+||+||.+...+
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 36 DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5999999999999999842 3468999999998754
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=4.1e-06 Score=50.51 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=28.4
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.||..|+.+|.+..+ ...+||+||.+...+
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 7999999999999997432 367999999987653
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.2e-05 Score=48.99 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=28.4
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
..||+.||+.|+++|.+. ..+||+||.+.....
T Consensus 32 ~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 32 TECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp SSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSC
T ss_pred CCCCCHHHHHHHHHHHHc----CCcCCCcCcccCccc
Confidence 479999999999999987 368999999987543
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=9.1e-06 Score=48.65 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=27.5
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||+.|+++|.+. ...+||.||++...+
T Consensus 31 ~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSS---SSPKCTACQESIVKD 63 (66)
T ss_dssp CSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCCTT
T ss_pred CCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCChh
Confidence 379999999999999973 257899999987653
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.73 E-value=7.2e-06 Score=55.94 Aligned_cols=31 Identities=23% Similarity=0.649 Sum_probs=27.0
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.||..|+.+|... ..+||.||.+....
T Consensus 70 ~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp TTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred CCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 69999999999999876 46899999998643
No 29
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.68 E-value=6.5e-06 Score=67.72 Aligned_cols=38 Identities=24% Similarity=0.655 Sum_probs=30.6
Q ss_pred eeec--ccccchhHHHHHHHHHHhcC--CC-----Cccccccccccc
Q 039237 7 LVAC--GTCKNLIHEECWVTWKRSRG--RR-----AASCVICRGRWR 44 (98)
Q Consensus 7 lVwC--~~CGnniHkeCf~~W~~s~~--~~-----~vtCp~CRs~W~ 44 (98)
...| .+||+.||..|+.+|.++.. ++ ..+|||||++..
T Consensus 326 dk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 326 LVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4568 49999999999999999842 11 268999999876
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.65 E-value=2.2e-05 Score=46.85 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=27.7
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||++|+.+|.... ..+||.||.+-...
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 4799999999999997653 57899999987643
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.2e-05 Score=47.77 Aligned_cols=36 Identities=17% Similarity=0.532 Sum_probs=29.8
Q ss_pred cccchhHHHHHHHHHHhc--CCCCcccccccccccCCC
Q 039237 12 TCKNLIHEECWVTWKRSR--GRRAASCVICRGRWRDNR 47 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~--~~~~vtCp~CRs~W~~~~ 47 (98)
.||+.||+.|+++|.+.. ..+..+||+||.+...+.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 699999999999999883 234689999999987543
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=1.9e-05 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred cccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
.||+.||..|+.+|... ..+||+||.+-.
T Consensus 32 ~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 32 KCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp TTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred cCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 69999999999999976 468999999875
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.60 E-value=2e-05 Score=50.83 Aligned_cols=35 Identities=11% Similarity=0.485 Sum_probs=29.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
.||+.||..|+.+|...+.+ ..+||.||.+.....
T Consensus 38 ~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKRS 72 (112)
T ss_dssp TTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTTT
T ss_pred CCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHhh
Confidence 69999999999999997542 578999999887543
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.58 E-value=2.3e-05 Score=51.03 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=28.1
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||..||..|+++|.+.+ .+||.||++...+
T Consensus 95 ~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 95 TECGHVFCSQCLRDSLKNA----NTCPTCRKKINHK 126 (133)
T ss_dssp ETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCGG
T ss_pred CCCCChhhHHHHHHHHHcC----CCCCCCCCcCChh
Confidence 5899999999999999874 5899999998754
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.56 E-value=2.7e-05 Score=50.65 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=28.6
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
..||+.||.+|+.+|.+.+ .+||.||.+.....
T Consensus 30 ~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKR 62 (133)
T ss_dssp ETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTTTC
T ss_pred cCCCChhhHHHHHHHHHhC----CCCCCCCCcCcccc
Confidence 5799999999999999874 58999999987553
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=9.4e-06 Score=49.34 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=26.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.||.+|+++|...+ .+||+||.+...
T Consensus 32 ~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp TTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred cCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 599999999999999763 789999998763
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.54 E-value=2.4e-05 Score=50.12 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=27.2
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..||+.||+.|+.+|... ..+||.||.+...
T Consensus 39 ~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp TTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 479999999999999985 3689999998775
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.50 E-value=3.2e-05 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.||..|+.+|...+ ..+||.||.+...
T Consensus 69 ~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp TTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred eCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 799999999999999843 5699999999875
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.47 E-value=4.1e-05 Score=48.15 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.7
Q ss_pred cccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
.||+.|++.|+.+|....+ ..+||.||.+..
T Consensus 31 ~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 31 CCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp TTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 4999999999999998753 478999999863
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.47 E-value=3.6e-05 Score=53.45 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.6
Q ss_pred ecccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 9 wC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
....||+.||..|+.+|.... ..+||.||.+...
T Consensus 69 ~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 69 TTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp EETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred EeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 335899999999999999863 5789999999853
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.46 E-value=4.2e-05 Score=46.76 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.|++.|+.+|.+.. ..+||.||.+....
T Consensus 25 ~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 25 STGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp TTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred CCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 699999999999999752 57899999987643
No 42
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.44 E-value=1.1e-05 Score=49.09 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=29.1
Q ss_pred cccchhHHHHHHHHHHhcC---CCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRG---RRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~---~~~vtCp~CRs~W~~~ 46 (98)
.||+.||+.|+.+|.+... ....+||+||.+...+
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 6999999999999998742 3468999999998753
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.34 E-value=5.5e-05 Score=49.20 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.9
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||+.||..|+.+|...+ .+||.||.+-...
T Consensus 32 ~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 32 IECLHSFCKTCIVRYLETS----KYCPICDVQVHKT 63 (108)
T ss_dssp TTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCSS
T ss_pred CCCCChhhHHHHHHHHHhC----CcCcCCCcccccc
Confidence 4799999999999999874 7899999997753
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=7.6e-05 Score=44.05 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=23.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVIC 39 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~C 39 (98)
.||+.||+.|+++|.+..+ +..+||+|
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred CCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 7999999999999998743 36789998
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.30 E-value=8.1e-05 Score=48.82 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=28.5
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..||..||..|+.+|.... ..+||.||.+....
T Consensus 39 ~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 39 TSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred cCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 3799999999999999984 46899999998754
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.18 E-value=0.00012 Score=48.52 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.8
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||..|++.|+.+|.+.+. .+||.||.+....
T Consensus 35 ~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 35 PCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (118)
T ss_dssp TTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred CcCChhhHHHHHHHHhhCC---CCCCCCCCCcCHH
Confidence 6999999999999999863 4899999998753
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00011 Score=42.18 Aligned_cols=27 Identities=22% Similarity=0.671 Sum_probs=22.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVIC 39 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~C 39 (98)
.||+.||+.|+++|..... +..+||+|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 6999999999999987532 36889998
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00017 Score=50.45 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=28.6
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
-.||..|++.|+.+|.... ..+||.||.+...+
T Consensus 94 ~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp CTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 3799999999999999863 46899999998865
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.95 E-value=5.5e-05 Score=49.57 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=26.8
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.|+..|+.+|.... ..+||.||.+...
T Consensus 32 ~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp TTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 799999999999999753 4789999998763
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.73 E-value=0.00071 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.633 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
.||++|+..|+.++... ...+||.||.+.....
T Consensus 32 ~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTD---ENGLCPACRKPYPEDP 64 (78)
T ss_dssp TTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSCS
T ss_pred CCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCCc
Confidence 49999999999998754 2578999999988654
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.58 E-value=0.00073 Score=55.12 Aligned_cols=32 Identities=25% Similarity=0.773 Sum_probs=27.6
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..||+.||..|+.+|..+. ..+||.||++-..
T Consensus 348 lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 4799999999999999863 5789999998764
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.55 E-value=0.00041 Score=48.16 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccc
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W 43 (98)
.||..|++.|+.+|.+.. ..+||.||.+-
T Consensus 48 ~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 76 (141)
T 3knv_A 48 QCGHRYCSFCLASILSSG---PQNCAACVHEG 76 (141)
T ss_dssp TTSCEEEHHHHHHHGGGS---CEECHHHHHTT
T ss_pred CCCCccCHHHHHHHHhcC---CCCCCCCCCcc
Confidence 899999999999999753 47899999974
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.10 E-value=0.002 Score=44.68 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.7
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||..|.+.|+.+|.+.+. .+||.||.+...+
T Consensus 35 ~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 35 PCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (170)
T ss_dssp TTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred CCCCHHHHHHHHHHHHhCC---CCCCCCccCcchh
Confidence 7999999999999998753 4899999987653
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.07 E-value=0.00044 Score=45.69 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=25.6
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.|+..|+.+|.. .+||.||.+...+
T Consensus 40 ~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG------TGCPVCYTPAWIQ 68 (117)
T ss_dssp SSSCCBCTTTGGGGTT------TBCSSSCCBCSCS
T ss_pred CCCCHHHHHHHHHHhc------CCCcCCCCcCccc
Confidence 7999999999999986 6799999998643
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.70 E-value=0.0015 Score=40.30 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=22.5
Q ss_pred cccch-hHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNL-IHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
.||+. |...|+.+| .+||+||++..
T Consensus 41 pCgH~~~C~~C~~~~--------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV--------DKCPMCYTVIT 66 (74)
T ss_dssp TTCCBCCCHHHHTTC--------SBCTTTCCBCS
T ss_pred CCCChhHHHHhhhcC--------ccCCCcCcCcc
Confidence 79999 999999998 57999999865
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.86 E-value=0.011 Score=37.46 Aligned_cols=30 Identities=3% Similarity=0.006 Sum_probs=26.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.|-+.|+.+|... ..+||.||.+-..
T Consensus 31 ~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 31 PSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred CCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 59999999999999986 3689999988653
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.70 E-value=0.0071 Score=43.40 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=26.3
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.|-+.|+.+|....+ .+||.||.+-..
T Consensus 225 ~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~ 255 (281)
T 2c2l_A 225 PSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQ 255 (281)
T ss_dssp SSCCEEETTHHHHHHHHTC---SSCTTTCCCCCG
T ss_pred CCCCEECHHHHHHHHHHCC---CCCcCCCCCCch
Confidence 5999999999999998752 459999998764
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.68 E-value=0.011 Score=35.58 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=24.6
Q ss_pred ccccch-hHHHHHHHHHHhcCCCCccccccccccc
Q 039237 11 GTCKNL-IHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 11 ~~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
.-||+. +=.+|..+|.+.. .+||+||++-.
T Consensus 25 ~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 55 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKAG----ASCPICKKEIQ 55 (63)
T ss_dssp TTEEEEEECHHHHHHHHHTT----CBCTTTCCBCC
T ss_pred cCCCCHhHHHHHHHHHHHhC----CcCCCcCchhh
Confidence 368887 7899999998763 67999999864
No 59
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=94.56 E-value=0.011 Score=41.07 Aligned_cols=30 Identities=17% Similarity=0.627 Sum_probs=24.1
Q ss_pred ecccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 9 wC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
-|..||..| ...-.++..||-|+|.|...+
T Consensus 69 ~C~~CG~~F---------~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVF---------KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBC---------CCCSSCCSSCSSSCCCCBCCC
T ss_pred ChhhCcCee---------cccCCCCCCCcCCCCCccCCc
Confidence 589999998 233356899999999998764
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.48 E-value=0.0025 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.625 Sum_probs=23.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
.||+.|++.|+.+| ..+||+||++-..+
T Consensus 23 ~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp TTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred CCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 69999999999873 47899999987643
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.21 E-value=0.015 Score=37.36 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=26.1
Q ss_pred cccchhHHHHHHHHHHhcC--CCCccccc--cccc
Q 039237 12 TCKNLIHEECWVTWKRSRG--RRAASCVI--CRGR 42 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~--~~~vtCp~--CRs~ 42 (98)
.||+.|-+.|+.+|..... .+..+||. ||.+
T Consensus 25 ~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 25 VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 5999999999999998752 34689999 9866
No 62
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=94.21 E-value=0.023 Score=38.03 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.3
Q ss_pred CCCCceeecccccchhHHHHHHH
Q 039237 2 GSGERLVACGTCKNLIHEECWVT 24 (98)
Q Consensus 2 gs~e~lVwC~~CGnniHkeCf~~ 24 (98)
|..+.|++|.+|++.+|..|+..
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTC
T ss_pred CCchhceEhhhcCCCCCCchhcC
Confidence 45679999999999999999964
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.16 E-value=0.015 Score=34.98 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=23.8
Q ss_pred cccch-hHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNL-IHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
-||+. +=.+|..+|.+.+ .+||+||++..
T Consensus 27 pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 56 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRN----KPCPVCRQPIQ 56 (64)
T ss_dssp TEEEEEECHHHHHHHHHTT----CCCTTTCCCCC
T ss_pred CCCChhhHHHHHHHHHHcC----CcCCCcCcchh
Confidence 68888 4589999999753 57999999865
No 64
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.12 E-value=0.011 Score=38.84 Aligned_cols=30 Identities=3% Similarity=0.034 Sum_probs=26.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.|-+.|+.+|... ..+||.||.+-..
T Consensus 46 ~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 46 PSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred CCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 59999999999999984 4789999998764
No 65
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.08 E-value=0.0099 Score=37.25 Aligned_cols=40 Identities=25% Similarity=0.559 Sum_probs=31.6
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
....|+.|.+|.+.||..|+.-.......+.=.|+.|++.
T Consensus 20 ~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 20 DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3457899999999999999976655544456789999864
No 66
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=93.78 E-value=0.017 Score=37.79 Aligned_cols=31 Identities=6% Similarity=-0.140 Sum_probs=26.5
Q ss_pred cccc-chhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCK-NLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CG-nniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..|| +.|-+.|+.+|... ..+||.||.+-..
T Consensus 38 ~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred CCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 3688 99999999999986 3689999998764
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.74 E-value=0.024 Score=35.83 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=26.3
Q ss_pred cccchhHHHHHHHHHHhc--CC--CCccccc--cccc
Q 039237 12 TCKNLIHEECWVTWKRSR--GR--RAASCVI--CRGR 42 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~--~~--~~vtCp~--CRs~ 42 (98)
.||+.|-++|++++...+ .+ ..++||. ||.+
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 599999999999999874 22 3689999 9987
No 68
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.32 E-value=0.04 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=21.9
Q ss_pred ccccch-hHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 11 GTCKNL-IHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 11 ~~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
-.||+. |..+|+++ ..+||+||.+...
T Consensus 41 ~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 41 VPCGHLVTCKQCAEA--------VDKCPMCYTVITF 68 (75)
T ss_dssp SSSCCCCBCHHHHHH--------CSBCTTTCCBCCC
T ss_pred ecCCCHHHHHHHhhC--------CCCCccCCceecC
Confidence 369999 99999953 2679999998764
No 69
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=91.62 E-value=0.011 Score=39.77 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.0
Q ss_pred CCCCceeecccccchhHHHHHHHH
Q 039237 2 GSGERLVACGTCKNLIHEECWVTW 25 (98)
Q Consensus 2 gs~e~lVwC~~CGnniHkeCf~~W 25 (98)
|..+.|++|.+|++.+|..|+...
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCC
T ss_pred CCCCCCeEeCCCCCccchhhCCCh
Confidence 456799999999999999999765
No 70
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.79 E-value=0.044 Score=31.70 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=27.6
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCcccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
.+..++.|..|...||..|+.-=......+.-.||.|++
T Consensus 11 ~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 11 EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 456799999999999999995311122223567888875
No 71
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.70 E-value=0.015 Score=38.49 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.7
Q ss_pred CceeecccccchhHHHHHHHHHHhcCCCCccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICR 40 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CR 40 (98)
+.+++|.+|++.+|..|+.-.........-.||.|+
T Consensus 20 ~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 20 LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456999999999999999876543222234455443
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.23 E-value=0.12 Score=37.79 Aligned_cols=31 Identities=6% Similarity=-0.099 Sum_probs=26.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.||+.|=+.|+.+|....+ .+||.||.+-..
T Consensus 123 ~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~ 153 (179)
T 2f42_A 123 PSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQ 153 (179)
T ss_dssp TTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCEECHHHHHHHHHhCC---CCCCCCcCCCCh
Confidence 6999999999999998753 389999998764
No 73
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.12 E-value=0.082 Score=32.11 Aligned_cols=39 Identities=23% Similarity=0.449 Sum_probs=29.5
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
...++.|..|-..||..|+.-=..+...+.-.||.|+..
T Consensus 20 ~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 20 GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 457899999999999999985333333457789999763
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.78 E-value=0.15 Score=34.71 Aligned_cols=37 Identities=24% Similarity=0.616 Sum_probs=26.4
Q ss_pred CceeecccccchhHHHHHHHH------------HHhcCCCCcccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTW------------KRSRGRRAASCVICRG 41 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W------------~~s~~~~~vtCp~CRs 41 (98)
+.+--|..|++.||..||++= .+......-+|++|-.
T Consensus 27 ~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 27 ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 456678999999999999985 1112234578999943
No 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=87.11 E-value=0.074 Score=33.29 Aligned_cols=26 Identities=31% Similarity=0.707 Sum_probs=20.9
Q ss_pred cccch-hHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNL-IHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
-||+. +=.+|..+|. +||+||.+-..
T Consensus 35 pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 58888 7788988762 79999998764
No 76
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.24 E-value=0.056 Score=42.80 Aligned_cols=25 Identities=36% Similarity=0.856 Sum_probs=21.8
Q ss_pred cccch-hHHHHHHHHHHhcCCCCccccccccccc
Q 039237 12 TCKNL-IHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 12 ~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
-||+. |...|+.+| .+||+||++..
T Consensus 312 pCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp TTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred CCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 69999 999999988 46999999876
No 77
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.87 E-value=0.057 Score=38.31 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=31.2
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
.+..++.|.+|.+.+|..|+.--..+...+.-.||.|+..-.
T Consensus 12 ~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 12 NGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 345689999999999999975433333334678999998765
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.66 E-value=0.051 Score=39.38 Aligned_cols=41 Identities=27% Similarity=0.507 Sum_probs=30.4
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
...++.|.+|.+.+|..|+.--......+.-.||.|++.=.
T Consensus 16 ~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 16 GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 44689999999999999986443333334678999997543
No 79
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=83.10 E-value=0.3 Score=38.25 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=27.6
Q ss_pred ccccchhHHHHHHHHHHhcCCCCccccc--ccccccC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVI--CRGRWRD 45 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~--CRs~W~~ 45 (98)
..||++|=+.|+.+|.... +..+||. ||.+-..
T Consensus 198 ~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 198 RKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECG
T ss_pred CCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCch
Confidence 4799999999999998764 3589999 9997654
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.47 E-value=0.046 Score=33.25 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=28.0
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
...++.|.+|...||..|+.-=..+...+.-.|+.|++.
T Consensus 18 ~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 18 GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 457899999999999999874222222346679999864
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.51 E-value=0.29 Score=29.78 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=20.1
Q ss_pred cccch-hHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 12 TCKNL-IHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 12 ~CGnn-iHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
-||+. +-..|.++ ..+||+||++...
T Consensus 32 pCgH~~~C~~C~~~--------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 32 PCRHTCLCDGCVKY--------FQQCPMCRQFVQE 58 (68)
T ss_dssp TTTBCCSCTTHHHH--------CSSCTTTCCCCCC
T ss_pred CCCChhhhHHHHhc--------CCCCCCCCcchhc
Confidence 57777 88888872 2579999998874
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=79.34 E-value=0.066 Score=32.15 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=28.7
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCcccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W 43 (98)
...++.|..|...||..|+.-=......+.-.||.|+..-
T Consensus 14 ~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 14 SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4578999999999999999732222223466799887653
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.98 E-value=1.6 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=29.6
Q ss_pred CCCceeecccccchhHHHHHHHH------HHhc-CCCCccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTW------KRSR-GRRAASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W------~~s~-~~~~vtCp~CRs~ 42 (98)
.+..|+-|..|-+.||++|+..= .+.. ....=.|+.|+.+
T Consensus 65 dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 65 EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34567777999999999999974 3332 3447889999764
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.36 E-value=0.11 Score=34.23 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=28.1
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
.+..++.|..|.+.+|..|++-=..+...+.-.||.|+.-
T Consensus 65 ~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 65 EDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3457999999999999999963222222235678888764
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=76.49 E-value=0.99 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=27.8
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
.+..++.|..|...||..|+.-= .-..+.-.|+.|+..
T Consensus 29 ~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 29 NSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 34689999999999999999631 122236678888754
No 86
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.70 E-value=0.13 Score=32.98 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=27.0
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCC-ccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRA-ASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~-vtCp~CRs~ 42 (98)
+..++.|..|...+|..|+.-=......+. =.||.|+++
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 467999999999999999873322322223 679988863
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.29 E-value=0.086 Score=31.30 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=25.7
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCcccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
...++.|..|...||..|+.-=......+.-.||.|++
T Consensus 18 ~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 18 SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34688899999999999987322222223566888764
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.13 E-value=0.32 Score=29.92 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=27.5
Q ss_pred CceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
+.++.|..|..-||..|+.-=........-.||.|+..
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 46899999999999999974332222235679999865
No 89
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=74.79 E-value=0.76 Score=29.19 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=11.1
Q ss_pred CCceeecccccchh
Q 039237 4 GERLVACGTCKNLI 17 (98)
Q Consensus 4 ~e~lVwC~~CGnni 17 (98)
...++||..|+..|
T Consensus 22 ~~~~~wCP~C~~~~ 35 (86)
T 2ct7_A 22 DPKFLWCAQCSFGF 35 (86)
T ss_dssp CCCEECCSSSCCCE
T ss_pred CCCEeECcCCCchh
Confidence 45678999999876
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=74.60 E-value=1.3 Score=30.34 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=31.2
Q ss_pred ccchhHHHHHHHHHHhcCCCCcccccccccccCCC--------------CCCCCeeehhhh
Q 039237 13 CKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR--------------TDQDKYLNLAAF 59 (98)
Q Consensus 13 CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~--------------~~~eGYlNla~~ 59 (98)
|+..|=.+|...|.+.+ .-+||.||++-..-. .-.-.|||.-+.
T Consensus 20 CkHvFCydCa~~~~~~~---~k~Cp~C~~~V~rVe~~~~~~if~C~~~~~CkrtyLs~rdl 77 (101)
T 3vk6_A 20 CKHVFCYDCAILHEKKG---DKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDL 77 (101)
T ss_dssp TCCEEEHHHHHHHHHTT---CCBCTTTCCBCSEEEEEEGGGCCCCCCCCCCCCCCSSHHHH
T ss_pred ccccHHHHHHHHHHhcc---CCCCcCcCCeeeeeEEeccCCEEECCCCCCHHHHhcCHHHH
Confidence 55556689999998764 578999999987422 223458887765
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.75 E-value=0.11 Score=31.76 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=27.8
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
...|+.|..|...||..|+.-=......+.-.||.|++.
T Consensus 17 ~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 17 GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357899999999999999873222222245679999764
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.73 E-value=0.4 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.7
Q ss_pred CceeecccccchhHHHHHHHHHHh---cCCCCccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRS---RGRRAASCVICRGR 42 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s---~~~~~vtCp~CRs~ 42 (98)
..|+.|..|...||..|+.-=..+ .....-.|+.|+..
T Consensus 21 ~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 21 NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 789999999999999998742111 12346778888764
No 93
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=71.60 E-value=1.4 Score=26.36 Aligned_cols=32 Identities=3% Similarity=0.038 Sum_probs=26.3
Q ss_pred ccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 11 GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 11 ~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
..+|.-|=++|+++|.+.. .+||..|.+-...
T Consensus 20 ~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~~ 51 (61)
T 2bay_A 20 PKSRTIFEKSLLEQYVKDT----GNDPITNEPLSIE 51 (61)
T ss_dssp TTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCGG
T ss_pred CCCCcEEcHHHHHHHHHhC----CCCcCCcCCCChh
Confidence 3789999999999999875 3599999887543
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.87 E-value=0.27 Score=32.66 Aligned_cols=37 Identities=24% Similarity=0.505 Sum_probs=26.9
Q ss_pred CceeecccccchhHHHHHHHHHHhcCCCCcccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
..++.|..|.+.+|..|+.-=......+.=.|+.||.
T Consensus 75 ~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 75 DNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5799999999999999985322222233568988885
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.67 E-value=2.5 Score=30.07 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=28.9
Q ss_pred CCCceeecccccchhHHHHHHHHHH------h-cCCCCcccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKR------S-RGRRAASCVICRG 41 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~------s-~~~~~vtCp~CRs 41 (98)
.+-.|+.|.+|-+.||..|+..=.. . .....-.|+.|+.
T Consensus 71 ~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 71 EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456888899999999999986442 1 2234778999985
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.12 E-value=0.57 Score=30.25 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=29.1
Q ss_pred CceeecccccchhHHHHHHHHHH----hcCCCCccccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKR----SRGRRAASCVICRGRWR 44 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~----s~~~~~vtCp~CRs~W~ 44 (98)
..|++|..|...||..|+.==.. ....+.-.|+.|+..-.
T Consensus 31 ~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 31 NQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 67999999999999999863222 12234677999987654
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.32 E-value=0.35 Score=32.11 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=28.5
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
...|+.|..|-..||..|+.-=..+...+.-.||.|+..
T Consensus 34 ~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 34 PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 457899999999999999843222222346789999865
No 98
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.99 E-value=1.5 Score=28.40 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
+..|+.|..|...||..|+.-=. ...+.-.|+.|+..-.
T Consensus 39 ~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 39 SNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp EEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTT
T ss_pred CCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccc
Confidence 35899999999999999997311 2234677999987544
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=66.98 E-value=0.37 Score=34.78 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
....++.|.+|-..+|..|+.-=..+...+.-.||.|+..-.
T Consensus 10 ~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 10 KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 345689999999999999985311122234678999998743
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.62 E-value=0.4 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=27.6
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCC-Cccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRR-AASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~-~vtCp~CRs~ 42 (98)
.+..++.|.+|...||..|+.-=..+...+ .=.||.|+++
T Consensus 29 ~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 29 DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 457899999999999999986211111122 5678888753
No 101
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=64.14 E-value=2 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.396 Sum_probs=21.7
Q ss_pred CceeecccccchhHHHHHHHHHHhcCCCCc-cccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSRGRRAA-SCVICRGRWR 44 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~~~~~v-tCp~CRs~W~ 44 (98)
....+|..||+-+-. ..... +||.|.++-.
T Consensus 71 p~~~~C~~CG~~~e~----------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 71 KVELECKDCSHVFKP----------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp CCEEECSSSSCEECS----------CCSTTCCCSSSSSCCC
T ss_pred cceEEcCCCCCEEeC----------CCCCCCcCccccCCCc
Confidence 346789999988654 12356 8999999843
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.12 E-value=0.42 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCceeecccccchhHHHHHHHHHHhcCCC-Ccccccccc
Q 039237 3 SGERLVACGTCKNLIHEECWVTWKRSRGRR-AASCVICRG 41 (98)
Q Consensus 3 s~e~lVwC~~CGnniHkeCf~~W~~s~~~~-~vtCp~CRs 41 (98)
.+..|+.|..|...||..|+.-=..+...+ .=.||.|++
T Consensus 37 ~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 37 EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 467899999999999999986211111122 467888875
No 103
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=57.04 E-value=3.5 Score=28.80 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCCeeehhh
Q 039237 48 TDQDKYLNLAA 58 (98)
Q Consensus 48 ~~~eGYlNla~ 58 (98)
...+||+|+-.
T Consensus 29 ~~~~Gy~~~~~ 39 (269)
T 1p91_A 29 MAKEGYVNLLP 39 (269)
T ss_dssp BCTTSCEECSC
T ss_pred cCCCEEEEeec
Confidence 45678999753
No 104
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.53 E-value=3.9 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCcccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W 43 (98)
.+..+.|..|+..|-..-++.=...-+.+.++|++|...-
T Consensus 14 ~~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~ 53 (75)
T 2d9k_A 14 PLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNV 53 (75)
T ss_dssp CCCCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEE
T ss_pred CCcccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcC
Confidence 4567899899999977777655544445689999997753
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=54.82 E-value=1.5 Score=28.68 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=26.3
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
+..++.|..|..-+|..|+.-= ...-...-.||.||..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~-~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGID-RQHIPDTYLCERCQPR 76 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCC-TTSCCSSBCCTTTSSS
T ss_pred CCcEEEcCCCCCcCcCcCCCCC-ccCCCCCEECCCCcCC
Confidence 3568889999999999998531 1111135689999853
No 106
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=53.49 E-value=4 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=14.2
Q ss_pred eeecccccchhHHHHHH
Q 039237 7 LVACGTCKNLIHEECWV 23 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~ 23 (98)
-.-|..|+-++|+.|..
T Consensus 28 g~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 28 GLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp EEEETTTCCEECHHHHT
T ss_pred cCEeCCCCCeECHHHhh
Confidence 35688999999999975
No 107
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.07 E-value=6.7 Score=28.97 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=26.7
Q ss_pred ecccccchhHHHHHHHHHHhcCCCCcccccccccccC
Q 039237 9 ACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 9 wC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
.|.+|...|-..=+..-++ +..-++||+|..--..
T Consensus 200 ~C~GC~~~lppq~~~~i~~--~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLT--SGDMITCPYCGRILYA 234 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHH--SSSCEECTTTCCEEEC
T ss_pred ccCCCCeeeCHHHHHHHHC--CCCEEECCCCCeeEEe
Confidence 5999999998777777665 3357999999876543
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.59 E-value=1.1 Score=34.19 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCC-Cccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRR-AASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~-~vtCp~CRs~ 42 (98)
+..++.|.+|...+|-.|+.-=......+ .=.||.|++.
T Consensus 186 ~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 186 PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp --CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 56899999999999999996211111222 4679999763
No 109
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.10 E-value=1.4 Score=26.51 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=25.1
Q ss_pred Cceeeccc--cc-chhHHHHHHHHHHhcCCCCcccccccc
Q 039237 5 ERLVACGT--CK-NLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 5 e~lVwC~~--CG-nniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
..++.|.. |. .-||-.|+. ......+.-.||.|++
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45788877 66 689999998 3333335678998875
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.07 E-value=2.4 Score=28.62 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCCceeecc--cccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 3 SGERLVACG--TCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 3 s~e~lVwC~--~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
+...++.|. .|-+.||..|+. ..+...+.=.||.|+-.
T Consensus 23 ~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 23 DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 345789995 899999999997 33322335568877643
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.92 E-value=0.35 Score=31.60 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
+..++.|..|...+|..|+.-=......+.=.||.|+..
T Consensus 28 ~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 28 DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 356999999999999999961111112235679999874
No 112
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=47.54 E-value=15 Score=23.15 Aligned_cols=35 Identities=29% Similarity=0.704 Sum_probs=24.0
Q ss_pred eecccccchhHHHHHH----HHHHhcC---CCCccccccccc
Q 039237 8 VACGTCKNLIHEECWV----TWKRSRG---RRAASCVICRGR 42 (98)
Q Consensus 8 VwC~~CGnniHkeCf~----~W~~s~~---~~~vtCp~CRs~ 42 (98)
+-|..|+.=+|..|.. ....-.. .....||.|..+
T Consensus 3 i~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 3 MQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 5689999999999952 2222221 236889999754
No 113
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=46.86 E-value=5.6 Score=25.91 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=10.0
Q ss_pred CCCceeecccccch
Q 039237 3 SGERLVACGTCKNL 16 (98)
Q Consensus 3 s~e~lVwC~~CGnn 16 (98)
++....||+.|||+
T Consensus 26 ~~~~k~FCp~CGn~ 39 (79)
T 2con_A 26 SDMNRVFCGHCGNK 39 (79)
T ss_dssp SCSSCCSCSSSCCS
T ss_pred CCcccccccccCcc
Confidence 34566788888885
No 114
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.16 E-value=2.1 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=25.1
Q ss_pred Cceeeccc--cc-chhHHHHHHHHHHhcCCCCcccccccc
Q 039237 5 ERLVACGT--CK-NLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 5 e~lVwC~~--CG-nniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
..++.|.. |. .-||..|+. ......+.-.||.|+.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35788877 77 699999998 3332234678999975
No 115
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=43.64 E-value=7 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=15.2
Q ss_pred ceeecccccchhHHHHHHH
Q 039237 6 RLVACGTCKNLIHEECWVT 24 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~~ 24 (98)
.-..|..|+-++|+.|..+
T Consensus 36 qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 36 QGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CEEEETTTCCEECHHHHTT
T ss_pred eeeECCCCCCeEchhHhhh
Confidence 3456899999999999753
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.33 E-value=6.1 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=27.2
Q ss_pred CceeecccccchhHHHHHHHHHHh-cCCCCccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRS-RGRRAASCVICRGR 42 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s-~~~~~vtCp~CRs~ 42 (98)
...+-|..|..-||..|..-=... .....-.||.||..
T Consensus 21 ~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 21 KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 346788999999999999643222 22346789999974
No 117
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.01 E-value=20 Score=18.02 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=21.3
Q ss_pred Cceeecccccchh-HHHHHHHHHHh-cCCCCcccccc
Q 039237 5 ERLVACGTCKNLI-HEECWVTWKRS-RGRRAASCVIC 39 (98)
Q Consensus 5 e~lVwC~~CGnni-HkeCf~~W~~s-~~~~~vtCp~C 39 (98)
+..--|..||+.| .+.=|.+=.++ .+.+.-.||+|
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c 44 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44 (45)
T ss_dssp CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence 3445678888886 34444444333 44567788887
No 118
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.45 E-value=2.2 Score=22.56 Aligned_cols=8 Identities=25% Similarity=0.970 Sum_probs=4.7
Q ss_pred chhHHHHH
Q 039237 15 NLIHEECW 22 (98)
Q Consensus 15 nniHkeCf 22 (98)
+.+|+.||
T Consensus 24 ~~~Hk~CF 31 (31)
T 1zfo_A 24 KFWHKACF 31 (31)
T ss_dssp SCCCGGGC
T ss_pred eEecccCC
Confidence 44577665
No 119
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=40.44 E-value=3.7 Score=28.24 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=18.6
Q ss_pred eeecccccchhHHHHHHHHHHhcCCCCcccccccccc
Q 039237 7 LVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRW 43 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W 43 (98)
.-.|.+||+.|-.. ....+||.|-++-
T Consensus 132 ~y~C~~Cg~~~~~~----------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL----------PPGGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSC----------CGGGBCTTTCCBE
T ss_pred EEECCCCCCcccCC----------CCCCcCCCCCCcc
Confidence 34688999887432 2246899998873
No 120
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=40.12 E-value=4.1 Score=31.53 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=11.3
Q ss_pred CcccccccccccC
Q 039237 33 AASCVICRGRWRD 45 (98)
Q Consensus 33 ~vtCp~CRs~W~~ 45 (98)
..+|||||.-|+.
T Consensus 156 Dp~CPYCkkl~~~ 168 (273)
T 3tdg_A 156 DPMCPHCQKELTK 168 (273)
T ss_dssp CTTCHHHHHHHHT
T ss_pred CcCChhHHHHHHH
Confidence 6789999999985
No 121
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.74 E-value=7.9 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=18.7
Q ss_pred ceeecccccch--hHHHHHHHHHHhcCCCCcccccccc
Q 039237 6 RLVACGTCKNL--IHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 6 ~lVwC~~CGnn--iHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
..--|+.||.. +| .+..+.||.|..
T Consensus 27 v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS-----------RTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC-----------TTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeC-----------CCCCccCCCCCc
Confidence 33468999998 66 224789999988
No 122
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.70 E-value=23 Score=19.55 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=28.8
Q ss_pred CceeecccccchhHHHHHHHHHHhcCCCCcccc-ccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSRGRRAASCV-ICRGRWR 44 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp-~CRs~W~ 44 (98)
+...-|..||+.|-+.=|++-.++.+.++..|+ .|-..+.
T Consensus 8 ~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~ 48 (66)
T 2eod_A 8 KRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTV 48 (66)
T ss_dssp CCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEE
T ss_pred CCCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccc
Confidence 455778899999876666666555445678999 9976654
No 123
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=38.52 E-value=5.6 Score=23.58 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=13.5
Q ss_pred eecccccchhHHHHHH
Q 039237 8 VACGTCKNLIHEECWV 23 (98)
Q Consensus 8 VwC~~CGnniHkeCf~ 23 (98)
.-|..|+-+.|+.|.+
T Consensus 37 ~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 37 LRCANCKFTCHSECRS 52 (59)
T ss_dssp EECTTTSCEECHHHHT
T ss_pred cEeCCCCCeEehhhhh
Confidence 4588899999999964
No 124
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.21 E-value=16 Score=20.25 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCceeecccccchhHHHHHHHHHHhcCCCCcccccccccccCC
Q 039237 4 GERLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDN 46 (98)
Q Consensus 4 ~e~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~ 46 (98)
++..--|..||..|-..---+ +...+.++-.|++|-......
T Consensus 11 ~~k~~~C~~C~k~F~~~~~l~-~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEANQ-LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSSEEECSSSCCEEEHHHHHH-HEETTTTEEBCSSSCCBCEEC
T ss_pred CCCCccCCCCCchhccHHHhH-hhcCCCCCEECCCCCCccccC
Confidence 345567899999875543333 333445678999998776543
No 125
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=36.55 E-value=9.4 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.2
Q ss_pred eeecccccchhHHHHHHH
Q 039237 7 LVACGTCKNLIHEECWVT 24 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~ 24 (98)
-.-|..|+-++|+.|.++
T Consensus 41 g~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 41 GMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp EEEETTTCCEECTTHHHH
T ss_pred eeEcCCCCCeeCHHHHhh
Confidence 356889999999999876
No 126
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.93 E-value=20 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=27.4
Q ss_pred eeecccccchh--HHHHHHHHHHhcCCCCcccccccccccC
Q 039237 7 LVACGTCKNLI--HEECWVTWKRSRGRRAASCVICRGRWRD 45 (98)
Q Consensus 7 lVwC~~CGnni--HkeCf~~W~~s~~~~~vtCp~CRs~W~~ 45 (98)
..-|..||+.| .+.=|++=.+.-+.+.-.|..|-.....
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 35688899998 6666666555444467789999776653
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=35.58 E-value=4.1 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.499 Sum_probs=25.5
Q ss_pred Cceeeccc--cc-chhHHHHHHHHHHhcCCCCccccccccc
Q 039237 5 ERLVACGT--CK-NLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 5 e~lVwC~~--CG-nniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
..++.|.. |. .-||-.|+. ......+.-.||.|+..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 45788877 77 689999998 23322346789999764
No 128
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=35.06 E-value=4.9 Score=22.65 Aligned_cols=16 Identities=38% Similarity=0.804 Sum_probs=13.1
Q ss_pred eecccccchhHHHHHH
Q 039237 8 VACGTCKNLIHEECWV 23 (98)
Q Consensus 8 VwC~~CGnniHkeCf~ 23 (98)
..|..|+-++|+.|..
T Consensus 28 ~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 28 FRCQTCGYKFHEHCST 43 (52)
T ss_dssp EECTTTTCCBCSTTSS
T ss_pred CEeCCCCCeEChhHHh
Confidence 4678899999999954
No 129
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.53 E-value=2.9 Score=25.84 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=13.6
Q ss_pred eecccccchhHHHHHH
Q 039237 8 VACGTCKNLIHEECWV 23 (98)
Q Consensus 8 VwC~~CGnniHkeCf~ 23 (98)
.-|..|+-++|+.|..
T Consensus 46 ~~C~~C~~~~Hk~C~~ 61 (74)
T 2db6_A 46 LRCKNCKTNIHEHCQS 61 (74)
T ss_dssp EEESSSCCEECTTTTG
T ss_pred cccCCCCCccChhHHh
Confidence 4688899999999976
No 130
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.28 E-value=9.7 Score=24.44 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=10.1
Q ss_pred eecccccchhHH
Q 039237 8 VACGTCKNLIHE 19 (98)
Q Consensus 8 VwC~~CGnniHk 19 (98)
.-|+.||+.+|.
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 469999999986
No 131
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.38 E-value=15 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceeecccccchhHHHHHHHHHHhcCCCCccccccccccc
Q 039237 6 RLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGRWR 44 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~ 44 (98)
..--|+.||..+= -+.+..++||+|...--
T Consensus 20 v~Y~C~~Cg~~~~---------l~~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 20 MIYLCADCGARNT---------IQAKEVIRCRECGHRVM 49 (63)
T ss_dssp CCCBCSSSCCBCC---------CCSSSCCCCSSSCCCCC
T ss_pred eEEECCCCCCeee---------cCCCCceECCCCCcEEE
Confidence 3345888988773 12345799999987654
No 132
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.09 E-value=19 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=27.4
Q ss_pred CceeecccccchhHHHHHHHHHHhc-CCCCccccccccc
Q 039237 5 ERLVACGTCKNLIHEECWVTWKRSR-GRRAASCVICRGR 42 (98)
Q Consensus 5 e~lVwC~~CGnniHkeCf~~W~~s~-~~~~vtCp~CRs~ 42 (98)
..-+-|..|..=||..|+.-=.... ....-.||.|+..
T Consensus 25 ~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 25 HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 4567888899999999996533332 1246789999875
No 133
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=29.06 E-value=12 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.7
Q ss_pred ceeecccccchhHHHHHH
Q 039237 6 RLVACGTCKNLIHEECWV 23 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~ 23 (98)
.-..|..||.++|+.|..
T Consensus 373 qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 373 QGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CEEEETTTCCEECGGGGG
T ss_pred CCCCCCCCcCccchhhhh
Confidence 345698999999999965
No 134
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=28.52 E-value=5.2 Score=24.24 Aligned_cols=34 Identities=24% Similarity=0.639 Sum_probs=24.0
Q ss_pred ceeeccc--cc-chhHHHHHHHHHHhcCCCCcccccccc
Q 039237 6 RLVACGT--CK-NLIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 6 ~lVwC~~--CG-nniHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
.++.|.. |. .-||-.|+.- .....+.-.||.|+.
T Consensus 23 ~MI~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 23 EMIGCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRG 59 (62)
T ss_dssp EEEECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHT
T ss_pred CeeeeeCCCCCcccEecccCCc--CcCCCCCEECcCccc
Confidence 5778877 55 8999999982 222234678998875
No 135
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=28.22 E-value=15 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=13.7
Q ss_pred CCCcccccccccccCCC
Q 039237 31 RRAASCVICRGRWRDNR 47 (98)
Q Consensus 31 ~~~vtCp~CRs~W~~~~ 47 (98)
.+.++||||.+...-+.
T Consensus 46 ~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDP 62 (87)
T ss_dssp CCEECCTTTCCEEECCT
T ss_pred CCeEECCCCCCEeEcCC
Confidence 36899999999988543
No 136
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=28.15 E-value=27 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.3
Q ss_pred eeecccccchhHHHHHHH
Q 039237 7 LVACGTCKNLIHEECWVT 24 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~ 24 (98)
-.-|..|+-++|+.|.++
T Consensus 54 G~~C~~C~~~~HkrC~~k 71 (84)
T 2row_A 54 ALECRRCHIKCHKDHMDK 71 (84)
T ss_dssp EEEESSSCCEEEHHHHHH
T ss_pred CCEecCCCCccchhHhCC
Confidence 455989999999999874
No 137
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=26.06 E-value=36 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=22.2
Q ss_pred CCCCceeecccccc--------------------hhHHHHHHHHHHhc
Q 039237 2 GSGERLVACGTCKN--------------------LIHEECWVTWKRSR 29 (98)
Q Consensus 2 gs~e~lVwC~~CGn--------------------niHkeCf~~W~~s~ 29 (98)
|+=..+|+|..+++ ||-++++++|.+.+
T Consensus 1 ~~M~R~V~C~kl~kE~eGLd~~PyPGelGkrIy~~VSkeAW~~W~~~Q 48 (94)
T 1t07_A 1 GHMSRTVMCRKYHEELPGLDRPPYPGAKGEDIYNNVSRKAWDEWQKHQ 48 (94)
T ss_dssp CCCCCEEEETTTTEEEEBCSSCSSSSHHHHHHHHHCBHHHHHHHHHHH
T ss_pred CCCcceeehHhhCCcccCCCCCCCCcHHHHHHHHHHhHHHHHHHHHhh
Confidence 45567888877765 78899999999884
No 138
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=24.93 E-value=13 Score=24.10 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=7.8
Q ss_pred Cccccccccc
Q 039237 33 AASCVICRGR 42 (98)
Q Consensus 33 ~vtCp~CRs~ 42 (98)
.-+||+|+.-
T Consensus 30 dy~Cp~C~~~ 39 (184)
T 4dvc_A 30 SFYCPHCNTF 39 (184)
T ss_dssp CTTCHHHHHH
T ss_pred CCCCHhHHHH
Confidence 4679999864
No 139
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=24.65 E-value=19 Score=19.76 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=7.3
Q ss_pred cccccccccc
Q 039237 34 ASCVICRGRW 43 (98)
Q Consensus 34 vtCp~CRs~W 43 (98)
|.||.|++|=
T Consensus 1 VlC~~C~~pe 10 (36)
T 1k81_A 1 VICRECGKPD 10 (36)
T ss_dssp CCCSSSCSCE
T ss_pred CCCcCCCCCC
Confidence 5688888774
No 140
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=24.45 E-value=9.8 Score=25.78 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.8
Q ss_pred CcccccccccccC
Q 039237 33 AASCVICRGRWRD 45 (98)
Q Consensus 33 ~vtCp~CRs~W~~ 45 (98)
...|||||.-+..
T Consensus 23 D~~Cp~C~~~~~~ 35 (147)
T 3gv1_A 23 DPDCPFCKRLEHE 35 (147)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCChhHHHHHHH
Confidence 5789999998774
No 141
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.27 E-value=52 Score=16.73 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=20.7
Q ss_pred CceeecccccchhH-HHHHHHHHHh-cCCCCccccccc
Q 039237 5 ERLVACGTCKNLIH-EECWVTWKRS-RGRRAASCVICR 40 (98)
Q Consensus 5 e~lVwC~~CGnniH-keCf~~W~~s-~~~~~vtCp~CR 40 (98)
+...-|..||..|- +.=|.+-.++ .+.+.-.|++|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 44566878888763 3334443333 234566788873
No 142
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=24.21 E-value=9.3 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.542 Sum_probs=16.0
Q ss_pred ceeecccccchhHHHHHH
Q 039237 6 RLVACGTCKNLIHEECWV 23 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~ 23 (98)
.-+.|..|.+=||.+|++
T Consensus 19 ~mLqC~~C~qWFH~~Cl~ 36 (177)
T 3rsn_A 19 VELQCGICTKWFTADTFG 36 (177)
T ss_dssp CEEECTTTCCEEEGGGGT
T ss_pred eeEeeccccceecHHHhc
Confidence 457899999999999997
No 143
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=24.15 E-value=10 Score=24.90 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=21.4
Q ss_pred eec-ccccchhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 8 VAC-GTCKNLIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 8 VwC-~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
+-| ..|=|.+-.+=.+---. -..||||-++-.+++
T Consensus 9 ~kCEq~~vn~~DqelHdlnCs-----~NiCPYC~nRls~eG 44 (77)
T 2l7x_A 9 TICETTPVNAIDAEMHDLNCS-----YNICPYCASRLTSDG 44 (77)
T ss_dssp TTTCCCCSSHHHHHHHHHHHT-----TTCCTTTCCCCCTTT
T ss_pred eeeccccccHHHHHHHHcCCC-----cccChhhhccCCccc
Confidence 345 55656555443322211 367999999998887
No 144
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=24.10 E-value=6.4 Score=24.38 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=13.2
Q ss_pred eecccccchhHHHHHH
Q 039237 8 VACGTCKNLIHEECWV 23 (98)
Q Consensus 8 VwC~~CGnniHkeCf~ 23 (98)
.-|..||-+.|+.|.+
T Consensus 50 ~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 50 LRCANCKFTCHSECRS 65 (72)
T ss_dssp EECTTSSCEECTGGGG
T ss_pred CccCCCCCeechhhhc
Confidence 4688899999999864
No 145
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=24.02 E-value=15 Score=23.21 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=12.9
Q ss_pred CCCcccccccccccCC
Q 039237 31 RRAASCVICRGRWRDN 46 (98)
Q Consensus 31 ~~~vtCp~CRs~W~~~ 46 (98)
.+.+.||||.....-.
T Consensus 38 ~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLK 53 (67)
T ss_dssp TSEEEETTTTEEEEET
T ss_pred CCeEECCCCCCEEEEC
Confidence 3589999999988754
No 146
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.32 E-value=7.7 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=24.0
Q ss_pred ceeeccc--cc-chhHHHHHHHHHHhcCCCCccccccccc
Q 039237 6 RLVACGT--CK-NLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 6 ~lVwC~~--CG-nniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
.++.|.. |. .-||-.|+. ......+.-.||.|+..
T Consensus 48 ~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 48 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4677766 66 679999997 22222346789999864
No 147
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.28 E-value=58 Score=17.40 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=26.2
Q ss_pred CceeecccccchhH-HHHHHHHHHh---cCCCCccccccccccc
Q 039237 5 ERLVACGTCKNLIH-EECWVTWKRS---RGRRAASCVICRGRWR 44 (98)
Q Consensus 5 e~lVwC~~CGnniH-keCf~~W~~s---~~~~~vtCp~CRs~W~ 44 (98)
+..--|..||..|- +.=|.+=.++ .+.++-.|++|-....
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 44556888998874 4445554444 2446789999976654
No 148
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=22.96 E-value=11 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.841 Sum_probs=10.7
Q ss_pred CcccccccccccC
Q 039237 33 AASCVICRGRWRD 45 (98)
Q Consensus 33 ~vtCp~CRs~W~~ 45 (98)
..+|||||.-++.
T Consensus 106 D~~Cp~C~~~~~~ 118 (241)
T 1v58_A 106 DPFCPYCKQFWQQ 118 (241)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCChhHHHHHHH
Confidence 6789999988763
No 149
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.90 E-value=13 Score=22.01 Aligned_cols=17 Identities=24% Similarity=0.737 Sum_probs=13.4
Q ss_pred eecccccchhHHHHHHH
Q 039237 8 VACGTCKNLIHEECWVT 24 (98)
Q Consensus 8 VwC~~CGnniHkeCf~~ 24 (98)
.-|..|+-++|+.|..+
T Consensus 41 ~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 41 LKCDACGMNVHHRCQTK 57 (65)
T ss_dssp EEESSSCCEECTTTTTT
T ss_pred cccCCCCCccCHhHHhh
Confidence 45888999999998643
No 150
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=22.49 E-value=14 Score=25.76 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=10.7
Q ss_pred CcccccccccccC
Q 039237 33 AASCVICRGRWRD 45 (98)
Q Consensus 33 ~vtCp~CRs~W~~ 45 (98)
...|||||.-++.
T Consensus 95 d~~Cp~C~~~~~~ 107 (211)
T 1t3b_A 95 DITCHYCHLLHQQ 107 (211)
T ss_dssp CTTCHHHHHHHTT
T ss_pred CCCCHhHHHHHHH
Confidence 5789999998874
No 151
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.22 E-value=55 Score=16.87 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=22.5
Q ss_pred eecccccchhH-HHHHHHHHHh-cCCCCccccccccccc
Q 039237 8 VACGTCKNLIH-EECWVTWKRS-RGRRAASCVICRGRWR 44 (98)
Q Consensus 8 VwC~~CGnniH-keCf~~W~~s-~~~~~vtCp~CRs~W~ 44 (98)
--|..||..|- +.=|.+-.++ .+.++-.|+.|.....
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 45778888763 2334333333 3446789999976654
No 152
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=21.95 E-value=13 Score=30.27 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=15.9
Q ss_pred ceeecccccchhHHHHHHH
Q 039237 6 RLVACGTCKNLIHEECWVT 24 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~~ 24 (98)
.-..|..||.++|+.|...
T Consensus 545 qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 545 QGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEETTTCCEECSGGGGG
T ss_pred CCcCCCCCCCccchhhhhc
Confidence 3467999999999999864
No 153
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.88 E-value=28 Score=19.55 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceeecccccc-hhHHHHHHHHHHhcCCCCcccccccccccCCC
Q 039237 6 RLVACGTCKN-LIHEECWVTWKRSRGRRAASCVICRGRWRDNR 47 (98)
Q Consensus 6 ~lVwC~~CGn-niHkeCf~~W~~s~~~~~vtCp~CRs~W~~~~ 47 (98)
.+..|..||. .|.. ....+.+.|+.|...+....
T Consensus 4 ~~~~CP~C~~~~l~~--------d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 4 KQKVCPACESAELIY--------DPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp SCCSCTTTSCCCEEE--------ETTTTEEEESSSCCBCCCCC
T ss_pred ccEeCcCCCCcceEE--------cCCCCeEECcccCCcccccc
Confidence 3556888877 4421 11234688888888777554
No 154
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=21.85 E-value=15 Score=25.60 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.8
Q ss_pred CcccccccccccC
Q 039237 33 AASCVICRGRWRD 45 (98)
Q Consensus 33 ~vtCp~CRs~W~~ 45 (98)
...||+||.-++.
T Consensus 95 d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 95 DITCGYCHKLHEQ 107 (216)
T ss_dssp CTTCHHHHHHHTT
T ss_pred CCCCHHHHHHHHH
Confidence 5789999998874
No 155
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.72 E-value=17 Score=22.45 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=14.4
Q ss_pred eeecccccchhHHHHHHH
Q 039237 7 LVACGTCKNLIHEECWVT 24 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~ 24 (98)
-..|..|+-++|+.|.++
T Consensus 51 G~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 51 GYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp EEECSSSCCEEESGGGSS
T ss_pred ccCcCCCCCcCCHhHHhh
Confidence 356889999999999653
No 156
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=84 Score=15.45 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=16.7
Q ss_pred CceeecccccchhHH-HHHHHHHHh-cCCCCcccccc
Q 039237 5 ERLVACGTCKNLIHE-ECWVTWKRS-RGRRAASCVIC 39 (98)
Q Consensus 5 e~lVwC~~CGnniHk-eCf~~W~~s-~~~~~vtCp~C 39 (98)
+..--|..||+.|-. .=|.+-.++ .+.++-.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en8_A 10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46 (46)
T ss_dssp CSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred CCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 344557777776632 223332222 22345566665
No 157
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.56 E-value=1.1e+02 Score=16.58 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCCceeecccccchhH-HHHHHHHHHh-cCCCCcccccccccccC
Q 039237 3 SGERLVACGTCKNLIH-EECWVTWKRS-RGRRAASCVICRGRWRD 45 (98)
Q Consensus 3 s~e~lVwC~~CGnniH-keCf~~W~~s-~~~~~vtCp~CRs~W~~ 45 (98)
+++..--|..|+..|- +.=|.+=.++ .+.+.-.|++|......
T Consensus 5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 4556677888998763 3334444444 34467899999877653
No 158
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.52 E-value=88 Score=17.16 Aligned_cols=42 Identities=17% Similarity=0.502 Sum_probs=26.2
Q ss_pred CCceeecccccchhH-HHHHHHHHHh-cCCCCcccccccccccC
Q 039237 4 GERLVACGTCKNLIH-EECWVTWKRS-RGRRAASCVICRGRWRD 45 (98)
Q Consensus 4 ~e~lVwC~~CGnniH-keCf~~W~~s-~~~~~vtCp~CRs~W~~ 45 (98)
++..--|..|++.|- +.=|.+=.++ .+.+.-.|+.|......
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 345566888998873 3334443333 34457899999876653
No 159
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=12 Score=23.32 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=14.6
Q ss_pred eeecccccchhHHHHHHH
Q 039237 7 LVACGTCKNLIHEECWVT 24 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~ 24 (98)
-.-|..|+-++|+.|..+
T Consensus 45 g~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 45 GYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp EEEETTTCCEECTTGGGT
T ss_pred ccccCCcCCeeChhhhhh
Confidence 356889999999999764
No 160
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.10 E-value=85 Score=15.57 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=17.3
Q ss_pred CceeecccccchhHH-HHHHHHHHh-cCCCCcccccc
Q 039237 5 ERLVACGTCKNLIHE-ECWVTWKRS-RGRRAASCVIC 39 (98)
Q Consensus 5 e~lVwC~~CGnniHk-eCf~~W~~s-~~~~~vtCp~C 39 (98)
+..--|..||+.|-. .=|.+-.++ .+.++-.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em5_A 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred CCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 344557777776532 223333333 22345567666
No 161
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.85 E-value=20 Score=22.02 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=23.2
Q ss_pred ceeeccccc---chhHHHHHHHHHHhcCCCCccccccccc
Q 039237 6 RLVACGTCK---NLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 6 ~lVwC~~CG---nniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
..+-|..|. .-||.+|+.- .......-.||.|+..
T Consensus 18 ~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 18 EMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred CEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence 566776653 7899999973 2222346679999754
No 162
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=90 Score=15.39 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=15.7
Q ss_pred eeecccccchhH-HHHHHHHHHh-cCCCCcccccc
Q 039237 7 LVACGTCKNLIH-EECWVTWKRS-RGRRAASCVIC 39 (98)
Q Consensus 7 lVwC~~CGnniH-keCf~~W~~s-~~~~~vtCp~C 39 (98)
.--|..||..|- +.=|.+-.++ .+.++-.|++|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred CcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 345666776652 2223333332 23345566665
No 163
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.66 E-value=4.9 Score=23.73 Aligned_cols=36 Identities=17% Similarity=0.468 Sum_probs=18.5
Q ss_pred eeecccccchhHHHHHHHHHHhc-CCCCccccccccc
Q 039237 7 LVACGTCKNLIHEECWVTWKRSR-GRRAASCVICRGR 42 (98)
Q Consensus 7 lVwC~~CGnniHkeCf~~W~~s~-~~~~vtCp~CRs~ 42 (98)
.+-|..|..=||..|..-=.... .-..-.||.|+..
T Consensus 22 mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 22 WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45555666666777664422211 1134567777654
No 164
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=20.52 E-value=22 Score=23.31 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=11.9
Q ss_pred CCCcccccccccccC
Q 039237 31 RRAASCVICRGRWRD 45 (98)
Q Consensus 31 ~~~vtCp~CRs~W~~ 45 (98)
.+.+.||||-....-
T Consensus 51 ~g~~~CpYCg~~f~l 65 (80)
T 2jvm_A 51 TGFVECGYCDRRYIH 65 (80)
T ss_dssp TCEEECSSSSCEEEE
T ss_pred CCeEECCCCCCEEEe
Confidence 358999999988763
No 165
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.51 E-value=5.1 Score=24.44 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=19.3
Q ss_pred ceeecccccchhHHHHHHHHHHhcCCCCccccccccc
Q 039237 6 RLVACGTCKNLIHEECWVTWKRSRGRRAASCVICRGR 42 (98)
Q Consensus 6 ~lVwC~~CGnniHkeCf~~W~~s~~~~~vtCp~CRs~ 42 (98)
..+-|..|..=||..|+.-=........-.||.|+..
T Consensus 30 ~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 30 RMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3456666666667777653211111234567766653
No 166
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.23 E-value=14 Score=24.36 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=24.8
Q ss_pred Cceeecccccc-hhHHHHHHHHHHhcCCCCcccccccc
Q 039237 5 ERLVACGTCKN-LIHEECWVTWKRSRGRRAASCVICRG 41 (98)
Q Consensus 5 e~lVwC~~CGn-niHkeCf~~W~~s~~~~~vtCp~CRs 41 (98)
-.|+.|.+||. ..|..|... +.....--|..|+.
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l---~~~~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSL---RPNSKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTC---CTTCSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHhCC---cCCCCCEECCcCcc
Confidence 47899999985 689999872 11234667888884
No 167
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=20.03 E-value=19 Score=20.51 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 039237 33 AASCVICRGRWR 44 (98)
Q Consensus 33 ~vtCp~CRs~W~ 44 (98)
...||+||..-.
T Consensus 11 ~~~Cp~C~~~~~ 22 (89)
T 3msz_A 11 RNGCPYCVWAKQ 22 (89)
T ss_dssp CTTCHHHHHHHH
T ss_pred cCCChhHHHHHH
Confidence 357999997643
Done!