BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039238
         (417 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6NC78|GOG8I_HUMAN Golgin subfamily A member 8I OS=Homo sapiens GN=GOLGA8I PE=3 SV=2
          Length = 632

 Score = 33.9 bits (76), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 19/118 (16%)

Query: 22  LDRRLLE---MQSTIDSLKDEQKALESALEEKQN------------EIKMQREQIDASKE 66
           LD R +E   +++TI SLK ++K +E  LEE++             E+++Q   I   + 
Sbjct: 86  LDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANIKKQKAKRVLEVQIQTLNIQKEEL 145

Query: 67  NSQLIVLKEILKQREAEIKD----LRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSK 120
           N+ L  +K  L+  E + KD    L+H L+ +  + SV +D  +  +K+ NQ  S SK
Sbjct: 146 NTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSDVMATQKKKANQLSSPSK 203


>sp|H3BSY2|GOG8M_HUMAN Golgin subfamily A member 8M OS=Homo sapiens GN=GOLGA8M PE=3 SV=1
          Length = 632

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 19/118 (16%)

Query: 22  LDRRLLE---MQSTIDSLKDEQKALESALEEKQN------------EIKMQREQIDASKE 66
           LD R +E   +++TI SLK ++K +E  LEE++             E+++Q   I   + 
Sbjct: 86  LDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQLQTLNIQKEEL 145

Query: 67  NSQLIVLKEILKQREAEIKD----LRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSK 120
           N+ L  +K  L+  E + KD    L+H L+ +  + SV +D  +  +K+ NQ  S SK
Sbjct: 146 NTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSDVMATQKKKANQLSSPSK 203


>sp|A8WUP2|HOOK_CAEBR Zygote defective protein 12 OS=Caenorhabditis briggsae GN=zyg-12
           PE=3 SV=2
          Length = 764

 Score = 33.5 bits (75), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 19/121 (15%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60
           ++++NEE++VK      + +EL+  +   Q+ +  L DE   L+S     Q E+ M +  
Sbjct: 298 LEKQNEELRVKRRQAEERVLELEASMEHFQAIVVKLTDENDTLQSG----QKELNMLKTH 353

Query: 61  IDASK---ENSQLIVLK-----EILKQREAEIKDLRHQ-------LEYRVNVWSVSADDP 105
           +D ++   E  + I  K     E+LK+RE E+K+L+ Q       LE+ V   ++  D+ 
Sbjct: 354 LDTAQSDVEEWRTIANKYQSDAEMLKKREKEVKELQGQVKSLTSRLEHHVKTATIDEDNK 413

Query: 106 S 106
           +
Sbjct: 414 A 414


>sp|P0CJ92|GOG8H_HUMAN Golgin subfamily A member 8H OS=Homo sapiens GN=GOLGA8H PE=3 SV=1
          Length = 632

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 19/118 (16%)

Query: 22  LDRRLLE---MQSTIDSLKDEQKALESALEEKQN------------EIKMQREQIDASKE 66
           LD R +E   +++TI SLK ++K +E  LEE++             E+++Q   I   K 
Sbjct: 86  LDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQIQTLNIQKGKL 145

Query: 67  NSQLIVLKEILKQREAEIKD----LRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSK 120
           N+ L  +K  L+  E + KD    L+H L+ +  + SV ++  +  +K+ NQ  S SK
Sbjct: 146 NTDLYHMKRSLRYFEEKSKDLAVCLQHSLQRKGELESVLSNVMATQKKKANQLSSRSK 203


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.125    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,932,392
Number of Sequences: 539616
Number of extensions: 6522083
Number of successful extensions: 25676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 1275
Number of HSP's that attempted gapping in prelim test: 22679
Number of HSP's gapped (non-prelim): 3860
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)