Query 039238
Match_columns 417
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 07:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 95.2 0.087 1.9E-06 56.9 9.1 93 2-94 544-655 (697)
2 PRK11637 AmiB activator; Provi 90.6 2 4.4E-05 42.8 9.9 83 4-88 171-253 (428)
3 PRK11637 AmiB activator; Provi 89.0 3 6.4E-05 41.6 9.6 86 8-95 45-130 (428)
4 PF00038 Filament: Intermediat 88.6 3.2 6.9E-05 39.0 9.0 20 42-61 259-278 (312)
5 PF12761 End3: Actin cytoskele 88.0 2.9 6.3E-05 39.8 8.3 75 13-88 99-194 (195)
6 PF11559 ADIP: Afadin- and alp 87.7 9 0.00019 33.1 10.6 17 75-91 133-149 (151)
7 PF07106 TBPIP: Tat binding pr 86.1 7.8 0.00017 34.1 9.5 56 6-61 75-132 (169)
8 PF10146 zf-C4H2: Zinc finger- 85.8 8.9 0.00019 36.8 10.4 58 4-61 2-59 (230)
9 PF07888 CALCOCO1: Calcium bin 85.6 5 0.00011 43.2 9.5 84 5-88 173-257 (546)
10 PF12718 Tropomyosin_1: Tropom 84.6 9.6 0.00021 33.8 9.4 91 2-92 6-97 (143)
11 COG4026 Uncharacterized protei 84.5 6.5 0.00014 39.2 9.0 65 19-92 137-201 (290)
12 PRK09039 hypothetical protein; 84.4 5.2 0.00011 39.7 8.5 88 4-91 54-167 (343)
13 PF13851 GAS: Growth-arrest sp 84.2 10 0.00022 35.3 9.7 89 3-91 69-173 (201)
14 KOG0977 Nuclear envelope prote 83.6 2.1 4.6E-05 45.9 5.7 82 8-91 301-386 (546)
15 PF00038 Filament: Intermediat 82.8 16 0.00035 34.4 10.6 47 12-58 211-257 (312)
16 PF08614 ATG16: Autophagy prot 81.7 2.8 6.1E-05 37.9 5.1 53 7-59 71-123 (194)
17 PF10473 CENP-F_leu_zip: Leuci 81.4 17 0.00037 32.9 9.8 57 5-61 47-103 (140)
18 PRK10884 SH3 domain-containing 81.1 6.1 0.00013 37.2 7.2 17 73-89 151-167 (206)
19 PF07106 TBPIP: Tat binding pr 81.1 4.1 8.8E-05 35.9 5.7 77 9-92 55-133 (169)
20 TIGR02169 SMC_prok_A chromosom 80.9 9.5 0.00021 40.9 9.4 7 384-390 1130-1136(1164)
21 COG1196 Smc Chromosome segrega 80.4 11 0.00025 42.5 10.2 57 5-61 378-434 (1163)
22 COG2433 Uncharacterized conser 80.3 7.2 0.00016 42.8 8.3 30 70-99 483-512 (652)
23 PF05667 DUF812: Protein of un 80.3 17 0.00036 39.3 10.9 86 7-92 325-418 (594)
24 PHA02562 46 endonuclease subun 79.5 7.2 0.00016 39.2 7.5 57 36-92 260-323 (562)
25 PF10473 CENP-F_leu_zip: Leuci 78.5 6.9 0.00015 35.3 6.4 59 4-62 67-125 (140)
26 TIGR02168 SMC_prok_B chromosom 78.5 14 0.00031 39.3 9.7 46 12-57 805-850 (1179)
27 PF04156 IncA: IncA protein; 78.5 20 0.00044 31.6 9.2 21 19-39 97-117 (191)
28 PRK03918 chromosome segregatio 76.9 16 0.00035 38.9 9.5 32 5-36 621-652 (880)
29 PF08614 ATG16: Autophagy prot 76.5 22 0.00047 32.3 9.0 83 7-91 99-181 (194)
30 COG1579 Zn-ribbon protein, pos 75.9 26 0.00056 34.2 9.9 77 16-92 37-134 (239)
31 PRK03918 chromosome segregatio 75.2 26 0.00057 37.3 10.5 25 12-36 202-226 (880)
32 PF13870 DUF4201: Domain of un 73.4 46 0.00099 29.6 10.1 87 4-90 7-113 (177)
33 PF08317 Spc7: Spc7 kinetochor 72.7 32 0.0007 33.6 9.8 9 82-90 276-284 (325)
34 PF01920 Prefoldin_2: Prefoldi 72.6 30 0.00064 27.4 7.9 79 5-92 7-100 (106)
35 TIGR03185 DNA_S_dndD DNA sulfu 72.6 28 0.0006 36.9 9.9 79 12-91 204-285 (650)
36 PF03961 DUF342: Protein of un 72.3 11 0.00024 38.1 6.7 78 7-94 331-408 (451)
37 PF05266 DUF724: Protein of un 72.2 32 0.0007 32.1 9.2 84 12-95 98-186 (190)
38 KOG0980 Actin-binding protein 71.6 25 0.00054 40.3 9.7 60 33-92 489-550 (980)
39 TIGR02338 gimC_beta prefoldin, 71.5 11 0.00025 31.4 5.6 27 5-31 19-45 (110)
40 KOG1899 LAR transmembrane tyro 71.5 17 0.00037 40.6 8.3 89 12-100 169-270 (861)
41 PRK00846 hypothetical protein; 71.1 27 0.00059 29.0 7.6 47 13-61 4-50 (77)
42 PRK09039 hypothetical protein; 71.1 35 0.00076 34.1 9.7 78 9-91 122-199 (343)
43 PRK02224 chromosome segregatio 70.7 31 0.00067 37.1 9.9 24 69-92 378-401 (880)
44 KOG0804 Cytoplasmic Zn-finger 70.7 30 0.00065 37.2 9.5 27 68-94 421-447 (493)
45 PF10186 Atg14: UV radiation r 68.8 50 0.0011 30.2 9.6 16 73-88 131-146 (302)
46 PF11559 ADIP: Afadin- and alp 68.3 52 0.0011 28.4 9.1 74 16-91 51-124 (151)
47 TIGR03007 pepcterm_ChnLen poly 67.6 55 0.0012 32.9 10.4 36 22-57 315-350 (498)
48 PF12325 TMF_TATA_bd: TATA ele 67.5 61 0.0013 28.6 9.4 23 71-93 85-107 (120)
49 KOG1029 Endocytic adaptor prot 67.2 27 0.00058 40.0 8.8 58 5-62 495-552 (1118)
50 PRK03947 prefoldin subunit alp 66.8 47 0.001 28.4 8.5 57 5-61 15-110 (140)
51 KOG0161 Myosin class II heavy 66.4 29 0.00064 42.4 9.4 88 4-93 1084-1171(1930)
52 PF07888 CALCOCO1: Calcium bin 66.2 38 0.00083 36.7 9.4 37 7-43 154-190 (546)
53 PF05911 DUF869: Plant protein 66.0 36 0.00079 38.1 9.5 57 6-62 592-648 (769)
54 smart00502 BBC B-Box C-termina 65.7 65 0.0014 25.4 8.6 25 68-92 72-96 (127)
55 KOG0250 DNA repair protein RAD 64.7 39 0.00084 39.4 9.5 41 21-61 369-410 (1074)
56 KOG1853 LIS1-interacting prote 64.5 97 0.0021 31.7 11.3 87 5-91 93-180 (333)
57 PF10168 Nup88: Nuclear pore c 64.0 52 0.0011 36.3 10.1 88 6-93 561-664 (717)
58 TIGR01843 type_I_hlyD type I s 63.7 60 0.0013 31.0 9.4 41 14-54 141-181 (423)
59 PRK02224 chromosome segregatio 63.5 52 0.0011 35.4 9.9 42 12-54 574-615 (880)
60 TIGR03017 EpsF chain length de 63.3 40 0.00086 33.2 8.3 95 4-110 165-284 (444)
61 PF09755 DUF2046: Uncharacteri 63.2 94 0.002 31.8 11.0 100 7-110 110-213 (310)
62 PF15619 Lebercilin: Ciliary p 63.1 77 0.0017 29.7 9.7 80 10-91 12-105 (194)
63 PF13851 GAS: Growth-arrest sp 63.0 72 0.0016 29.7 9.5 24 70-93 109-132 (201)
64 PF11932 DUF3450: Protein of u 62.9 84 0.0018 29.5 10.0 55 8-62 40-94 (251)
65 COG2900 SlyX Uncharacterized p 62.9 28 0.0006 29.1 6.0 44 18-61 2-45 (72)
66 PF09726 Macoilin: Transmembra 62.8 49 0.0011 36.5 9.6 60 1-60 465-524 (697)
67 PF07200 Mod_r: Modifier of ru 62.6 57 0.0012 28.0 8.2 83 6-91 37-119 (150)
68 PF15254 CCDC14: Coiled-coil d 62.1 38 0.00083 38.5 8.7 63 24-89 455-543 (861)
69 PF06818 Fez1: Fez1; InterPro 61.7 37 0.0008 32.7 7.5 82 12-93 12-105 (202)
70 COG1196 Smc Chromosome segrega 61.0 40 0.00087 38.3 8.9 24 69-92 475-498 (1163)
71 PF08317 Spc7: Spc7 kinetochor 60.1 67 0.0015 31.5 9.2 22 70-91 246-267 (325)
72 PF10498 IFT57: Intra-flagella 59.5 63 0.0014 32.9 9.2 82 6-90 269-350 (359)
73 KOG0971 Microtubule-associated 58.7 26 0.00057 40.6 6.9 90 8-97 408-530 (1243)
74 PRK00295 hypothetical protein; 58.5 33 0.00072 27.3 5.6 40 20-59 1-40 (68)
75 PF15066 CAGE1: Cancer-associa 58.3 49 0.0011 35.8 8.4 87 1-90 367-468 (527)
76 PF00769 ERM: Ezrin/radixin/mo 58.1 1.1E+02 0.0025 29.3 10.2 90 3-92 5-113 (246)
77 PF12325 TMF_TATA_bd: TATA ele 57.9 1.1E+02 0.0024 26.9 9.3 23 69-91 62-84 (120)
78 PF14197 Cep57_CLD_2: Centroso 57.7 96 0.0021 25.0 8.2 55 7-61 2-56 (69)
79 PRK02793 phi X174 lysis protei 57.3 40 0.00087 27.1 6.0 40 20-59 4-43 (72)
80 PF08657 DASH_Spc34: DASH comp 56.8 49 0.0011 32.4 7.6 71 21-91 177-255 (259)
81 PF04102 SlyX: SlyX; InterPro 56.8 46 0.00099 26.3 6.2 40 22-61 2-41 (69)
82 PRK02119 hypothetical protein; 56.0 77 0.0017 25.6 7.4 39 21-59 6-44 (73)
83 PF10205 KLRAQ: Predicted coil 55.9 89 0.0019 27.4 8.2 61 12-78 7-67 (102)
84 PF00261 Tropomyosin: Tropomyo 54.4 1.6E+02 0.0034 27.6 10.3 29 20-48 137-165 (237)
85 cd00632 Prefoldin_beta Prefold 54.4 39 0.00085 27.9 5.7 27 5-31 15-41 (105)
86 TIGR01843 type_I_hlyD type I s 54.2 1E+02 0.0022 29.4 9.2 25 69-93 247-271 (423)
87 PRK00736 hypothetical protein; 54.1 43 0.00093 26.7 5.6 40 20-59 1-40 (68)
88 COG4942 Membrane-bound metallo 53.6 1E+02 0.0023 32.6 9.8 59 3-61 161-219 (420)
89 PF09738 DUF2051: Double stran 53.6 1.3E+02 0.0027 30.4 10.0 56 28-85 109-171 (302)
90 TIGR01000 bacteriocin_acc bact 53.6 92 0.002 31.5 9.2 72 25-97 237-320 (457)
91 PF05064 Nsp1_C: Nsp1-like C-t 53.6 6.1 0.00013 33.8 0.9 50 9-58 56-105 (116)
92 COG2433 Uncharacterized conser 53.6 67 0.0014 35.7 8.7 36 4-39 430-465 (652)
93 KOG0161 Myosin class II heavy 53.5 70 0.0015 39.4 9.6 79 16-94 1061-1144(1930)
94 TIGR00293 prefoldin, archaeal 53.4 1.3E+02 0.0028 25.1 8.7 31 6-36 9-39 (126)
95 TIGR03017 EpsF chain length de 52.7 1.9E+02 0.0041 28.6 11.0 21 35-55 315-335 (444)
96 TIGR02338 gimC_beta prefoldin, 52.6 94 0.002 26.0 7.7 57 5-61 12-83 (110)
97 PRK11519 tyrosine kinase; Prov 52.4 61 0.0013 35.0 8.2 38 3-40 260-297 (719)
98 PF02994 Transposase_22: L1 tr 52.0 29 0.00064 34.9 5.5 42 21-62 141-182 (370)
99 PF10828 DUF2570: Protein of u 51.7 1.1E+02 0.0023 26.0 7.9 29 11-39 26-54 (110)
100 PRK04863 mukB cell division pr 51.3 87 0.0019 37.5 9.7 59 4-62 363-421 (1486)
101 PF06273 eIF-4B: Plant specifi 50.8 25 0.00054 37.8 4.9 28 70-97 398-425 (492)
102 PF06810 Phage_GP20: Phage min 50.6 1.9E+02 0.0042 26.1 10.2 31 8-38 18-48 (155)
103 PF05008 V-SNARE: Vesicle tran 50.2 1.2E+02 0.0025 23.5 9.1 57 35-92 22-78 (79)
104 PF02994 Transposase_22: L1 tr 50.1 29 0.00062 35.0 5.1 73 18-92 99-182 (370)
105 PRK04325 hypothetical protein; 50.1 1.1E+02 0.0024 24.7 7.4 38 22-59 7-44 (74)
106 COG1842 PspA Phage shock prote 50.0 1.9E+02 0.0041 27.8 10.2 87 5-91 19-136 (225)
107 PF12329 TMF_DNA_bd: TATA elem 49.8 1E+02 0.0023 24.8 7.3 52 3-54 5-56 (74)
108 PF11932 DUF3450: Protein of u 49.7 1.5E+02 0.0033 27.7 9.5 41 22-62 33-73 (251)
109 PRK13729 conjugal transfer pil 49.6 25 0.00055 37.5 4.8 23 38-60 97-119 (475)
110 PF15294 Leu_zip: Leucine zipp 49.2 86 0.0019 31.5 8.1 84 8-91 130-224 (278)
111 PF10234 Cluap1: Clusterin-ass 48.0 1.1E+02 0.0025 30.4 8.6 71 15-87 167-237 (267)
112 PF04912 Dynamitin: Dynamitin 47.8 94 0.002 31.1 8.2 63 21-88 326-388 (388)
113 PF03962 Mnd1: Mnd1 family; I 47.8 93 0.002 28.8 7.6 25 68-92 103-127 (188)
114 PF08581 Tup_N: Tup N-terminal 47.7 1.6E+02 0.0035 24.4 9.7 59 29-93 16-75 (79)
115 TIGR00606 rad50 rad50. This fa 47.5 1.3E+02 0.0028 34.8 10.2 29 9-37 842-870 (1311)
116 PRK04778 septation ring format 47.4 1.6E+02 0.0035 31.1 10.1 86 7-92 380-465 (569)
117 PF05103 DivIVA: DivIVA protei 47.2 11 0.00024 31.1 1.4 57 5-61 27-83 (131)
118 COG3883 Uncharacterized protei 47.1 1.9E+02 0.0042 28.9 10.0 90 5-94 54-170 (265)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.9 1.5E+02 0.0034 25.5 8.4 25 3-27 3-27 (132)
120 TIGR01005 eps_transp_fam exopo 46.9 92 0.002 33.3 8.4 9 251-259 574-582 (754)
121 PF05278 PEARLI-4: Arabidopsis 46.5 1.8E+02 0.0039 29.3 9.8 25 67-91 206-230 (269)
122 KOG4674 Uncharacterized conser 46.2 1.2E+02 0.0026 37.4 9.8 42 4-45 1244-1285(1822)
123 PF00170 bZIP_1: bZIP transcri 46.1 27 0.00059 26.5 3.3 32 26-57 28-59 (64)
124 PRK04406 hypothetical protein; 46.0 75 0.0016 25.9 6.0 39 21-59 8-46 (75)
125 smart00787 Spc7 Spc7 kinetocho 45.9 1.8E+02 0.0039 29.1 9.8 8 83-90 272-279 (312)
126 PF10805 DUF2730: Protein of u 45.3 1.7E+02 0.0037 24.8 8.2 50 12-61 37-88 (106)
127 PRK09343 prefoldin subunit bet 45.0 62 0.0013 27.9 5.7 43 19-61 73-115 (121)
128 PF03962 Mnd1: Mnd1 family; I 44.8 1.4E+02 0.003 27.7 8.3 27 3-29 69-95 (188)
129 TIGR01005 eps_transp_fam exopo 44.4 2.3E+02 0.005 30.4 10.8 24 68-91 288-311 (754)
130 PRK13729 conjugal transfer pil 44.0 49 0.0011 35.4 5.8 21 72-92 101-121 (475)
131 PF03961 DUF342: Protein of un 44.0 59 0.0013 33.1 6.2 24 69-92 376-399 (451)
132 KOG0996 Structural maintenance 43.9 66 0.0014 38.1 7.2 96 2-97 520-628 (1293)
133 COG4026 Uncharacterized protei 43.7 47 0.001 33.4 5.3 46 1-46 133-178 (290)
134 PF07139 DUF1387: Protein of u 43.5 1.4E+02 0.0031 30.4 8.7 69 22-91 155-234 (302)
135 TIGR00606 rad50 rad50. This fa 43.3 1.6E+02 0.0034 34.2 10.0 89 5-93 986-1093(1311)
136 PF13815 Dzip-like_N: Iguana/D 42.7 1.7E+02 0.0036 25.0 7.8 53 28-89 63-115 (118)
137 PF10211 Ax_dynein_light: Axon 42.7 1.4E+02 0.003 27.7 7.9 19 68-86 170-188 (189)
138 PF15070 GOLGA2L5: Putative go 42.0 1.3E+02 0.0027 33.0 8.6 39 9-47 152-190 (617)
139 PF10212 TTKRSYEDQ: Predicted 42.0 1.9E+02 0.0042 31.5 9.8 56 33-88 450-514 (518)
140 TIGR03495 phage_LysB phage lys 41.9 2.6E+02 0.0056 25.4 9.2 30 69-99 69-98 (135)
141 PF13870 DUF4201: Domain of un 41.9 2.5E+02 0.0055 25.0 10.1 81 12-92 86-169 (177)
142 PF06120 Phage_HK97_TLTM: Tail 41.7 1.6E+02 0.0034 29.8 8.6 57 35-91 131-189 (301)
143 PF05529 Bap31: B-cell recepto 41.7 1.8E+02 0.004 26.1 8.3 30 63-92 156-185 (192)
144 PF00769 ERM: Ezrin/radixin/mo 41.6 2E+02 0.0044 27.6 9.0 86 4-91 34-126 (246)
145 PF05377 FlaC_arch: Flagella a 41.2 85 0.0019 24.9 5.4 35 21-55 4-38 (55)
146 PF04111 APG6: Autophagy prote 40.8 2.1E+02 0.0046 28.4 9.3 47 6-52 46-92 (314)
147 TIGR00998 8a0101 efflux pump m 40.4 3.2E+02 0.0069 25.7 10.7 32 6-37 83-114 (334)
148 PF12329 TMF_DNA_bd: TATA elem 40.2 2E+02 0.0043 23.2 8.6 20 43-62 3-22 (74)
149 COG1340 Uncharacterized archae 40.2 2.7E+02 0.0058 28.4 10.0 84 4-89 159-242 (294)
150 KOG4674 Uncharacterized conser 40.2 1.3E+02 0.0029 37.0 9.1 72 19-90 54-144 (1822)
151 PF06005 DUF904: Protein of un 40.0 2E+02 0.0043 23.5 7.5 44 6-49 7-50 (72)
152 smart00338 BRLZ basic region l 39.4 39 0.00084 25.7 3.2 35 25-59 27-61 (65)
153 PF15070 GOLGA2L5: Putative go 39.1 99 0.0021 33.8 7.3 60 2-61 166-232 (617)
154 PF02403 Seryl_tRNA_N: Seryl-t 39.0 1.8E+02 0.004 23.7 7.3 69 19-94 31-100 (108)
155 PRK11519 tyrosine kinase; Prov 38.3 1.9E+02 0.0041 31.4 9.2 66 22-87 258-323 (719)
156 PRK04406 hypothetical protein; 38.3 1.4E+02 0.0029 24.4 6.3 28 32-59 5-32 (75)
157 KOG1029 Endocytic adaptor prot 38.2 1.5E+02 0.0032 34.5 8.5 47 5-51 474-520 (1118)
158 KOG0996 Structural maintenance 38.1 1.3E+02 0.0029 35.8 8.4 88 5-92 379-471 (1293)
159 COG3883 Uncharacterized protei 38.1 1.9E+02 0.0042 28.9 8.5 73 17-91 23-96 (265)
160 PF15294 Leu_zip: Leucine zipp 37.7 1.6E+02 0.0036 29.6 8.0 26 67-92 252-277 (278)
161 PF10146 zf-C4H2: Zinc finger- 37.5 2.8E+02 0.006 26.9 9.3 61 2-62 7-70 (230)
162 PF14932 HAUS-augmin3: HAUS au 37.4 2.8E+02 0.0062 26.5 9.3 57 4-60 69-125 (256)
163 KOG2010 Double stranded RNA bi 37.1 95 0.0021 32.6 6.5 53 32-86 148-207 (405)
164 TIGR01010 BexC_CtrB_KpsE polys 37.0 1.6E+02 0.0035 28.7 7.8 60 30-89 169-235 (362)
165 PF07889 DUF1664: Protein of u 37.0 2.8E+02 0.0061 24.9 8.6 46 13-58 57-102 (126)
166 PF09738 DUF2051: Double stran 36.5 1.3E+02 0.0028 30.3 7.1 56 37-94 111-166 (302)
167 PF14362 DUF4407: Domain of un 36.5 2.4E+02 0.0051 27.0 8.7 29 63-92 178-206 (301)
168 PF12128 DUF3584: Protein of u 36.1 2E+02 0.0044 33.2 9.4 38 21-58 604-641 (1201)
169 KOG0933 Structural maintenance 36.0 1.9E+02 0.0042 34.2 9.1 92 3-94 329-425 (1174)
170 PF00261 Tropomyosin: Tropomyo 36.0 3.5E+02 0.0075 25.4 9.5 58 4-61 93-150 (237)
171 PRK09841 cryptic autophosphory 35.7 1.7E+02 0.0037 31.8 8.4 9 251-259 559-567 (726)
172 TIGR02977 phageshock_pspA phag 34.8 3.8E+02 0.0082 24.9 10.4 44 19-62 33-76 (219)
173 COG4717 Uncharacterized conser 34.5 2E+02 0.0043 33.6 8.9 75 18-92 213-298 (984)
174 KOG0612 Rho-associated, coiled 34.5 2.1E+02 0.0046 34.4 9.2 81 7-87 606-693 (1317)
175 PRK00736 hypothetical protein; 34.4 1.7E+02 0.0038 23.2 6.3 45 17-61 5-49 (68)
176 PRK00295 hypothetical protein; 34.2 1.8E+02 0.0038 23.2 6.2 43 18-60 6-48 (68)
177 KOG0612 Rho-associated, coiled 34.1 1.9E+02 0.0042 34.7 8.9 32 63-94 503-534 (1317)
178 PF05499 DMAP1: DNA methyltran 33.9 1.4E+02 0.003 28.5 6.5 68 13-93 89-166 (176)
179 PF05266 DUF724: Protein of un 33.9 3.9E+02 0.0085 25.1 9.4 39 20-58 127-165 (190)
180 TIGR03007 pepcterm_ChnLen poly 33.6 2.4E+02 0.0052 28.5 8.6 61 31-91 204-270 (498)
181 PRK09841 cryptic autophosphory 33.6 2.5E+02 0.0055 30.5 9.2 40 22-61 258-297 (726)
182 PF15619 Lebercilin: Ciliary p 33.4 3.2E+02 0.0068 25.7 8.8 73 19-91 14-91 (194)
183 KOG2264 Exostosin EXT1L [Signa 33.3 97 0.0021 34.9 6.1 72 3-90 79-150 (907)
184 PF14257 DUF4349: Domain of un 33.3 2.3E+02 0.005 26.6 7.9 51 43-93 137-187 (262)
185 PRK04863 mukB cell division pr 33.0 3.3E+02 0.0071 33.0 10.6 57 5-61 987-1043(1486)
186 smart00150 SPEC Spectrin repea 32.7 2E+02 0.0044 21.1 7.6 61 31-91 31-93 (101)
187 PF13815 Dzip-like_N: Iguana/D 32.2 1.6E+02 0.0035 25.0 6.2 43 18-60 74-116 (118)
188 smart00502 BBC B-Box C-termina 32.2 2.5E+02 0.0054 22.1 9.1 23 69-91 80-102 (127)
189 COG4942 Membrane-bound metallo 32.1 3.5E+02 0.0076 28.8 9.7 50 9-58 44-93 (420)
190 COG1382 GimC Prefoldin, chaper 32.1 1.2E+02 0.0027 27.1 5.6 43 18-60 71-113 (119)
191 PF02403 Seryl_tRNA_N: Seryl-t 32.0 1.3E+02 0.0028 24.5 5.4 20 9-28 42-61 (108)
192 PRK10698 phage shock protein P 32.0 4.1E+02 0.009 25.2 9.4 38 7-44 103-140 (222)
193 PF04012 PspA_IM30: PspA/IM30 31.5 4E+02 0.0087 24.2 9.4 49 14-62 95-143 (221)
194 KOG0978 E3 ubiquitin ligase in 31.2 3E+02 0.0066 31.0 9.5 32 68-99 594-625 (698)
195 PF04871 Uso1_p115_C: Uso1 / p 31.1 3.8E+02 0.0083 23.8 10.2 26 67-92 83-108 (136)
196 PF10267 Tmemb_cc2: Predicted 30.8 2.8E+02 0.0061 29.1 8.7 53 10-62 212-268 (395)
197 PTZ00464 SNF-7-like protein; P 30.7 4.1E+02 0.009 25.4 9.2 81 28-116 106-197 (211)
198 COG1579 Zn-ribbon protein, pos 30.6 3.3E+02 0.0071 26.9 8.6 31 29-59 94-124 (239)
199 KOG0977 Nuclear envelope prote 30.4 2.8E+02 0.0061 30.4 8.9 58 5-62 108-165 (546)
200 TIGR02231 conserved hypothetic 30.3 2.9E+02 0.0063 28.6 8.7 34 12-45 73-106 (525)
201 PF06810 Phage_GP20: Phage min 30.2 1.8E+02 0.004 26.2 6.5 57 3-59 20-83 (155)
202 smart00787 Spc7 Spc7 kinetocho 30.1 4.2E+02 0.0092 26.6 9.5 23 67-89 203-225 (312)
203 TIGR03185 DNA_S_dndD DNA sulfu 30.1 3.7E+02 0.008 28.8 9.6 50 12-61 423-472 (650)
204 PRK12704 phosphodiesterase; Pr 29.8 4E+02 0.0087 28.5 9.8 89 2-92 45-134 (520)
205 PF01920 Prefoldin_2: Prefoldi 29.8 1.6E+02 0.0035 23.2 5.5 30 3-32 12-41 (106)
206 PF01486 K-box: K-box region; 29.7 3.1E+02 0.0068 22.4 8.1 78 4-93 13-96 (100)
207 PF04012 PspA_IM30: PspA/IM30 29.5 4.4E+02 0.0094 24.0 10.5 75 17-91 30-135 (221)
208 KOG0963 Transcription factor/C 29.4 2.4E+02 0.0051 31.6 8.2 49 3-51 196-259 (629)
209 COG1315 Uncharacterized conser 29.4 1E+02 0.0023 33.7 5.5 35 69-103 462-496 (543)
210 PF05622 HOOK: HOOK protein; 29.1 18 0.0004 38.8 0.0 27 67-93 297-326 (713)
211 TIGR03752 conj_TIGR03752 integ 29.0 5E+02 0.011 28.2 10.3 25 69-93 117-141 (472)
212 TIGR03319 YmdA_YtgF conserved 28.9 4.7E+02 0.01 27.9 10.1 15 217-231 268-283 (514)
213 PRK01885 greB transcription el 28.8 3.5E+02 0.0076 24.4 8.0 35 63-97 42-76 (157)
214 PRK00409 recombination and DNA 28.8 4.2E+02 0.0091 29.6 10.1 39 11-49 521-559 (782)
215 PF05010 TACC: Transforming ac 28.8 5.3E+02 0.012 24.8 10.0 27 67-93 174-200 (207)
216 KOG0976 Rho/Rac1-interacting s 28.5 3.6E+02 0.0078 31.8 9.6 94 3-96 92-204 (1265)
217 PF04977 DivIC: Septum formati 28.5 47 0.001 25.0 2.1 27 22-48 22-48 (80)
218 PRK10698 phage shock protein P 28.4 5.2E+02 0.011 24.5 9.8 42 21-62 35-76 (222)
219 PRK01156 chromosome segregatio 28.3 5.2E+02 0.011 28.4 10.5 13 387-399 762-774 (895)
220 COG1340 Uncharacterized archae 28.1 4.6E+02 0.0099 26.8 9.4 39 6-44 30-68 (294)
221 PF05622 HOOK: HOOK protein; 28.0 20 0.00043 38.5 0.0 86 3-91 246-334 (713)
222 PF14131 DUF4298: Domain of un 27.5 1.3E+02 0.0028 24.9 4.6 38 25-62 1-38 (90)
223 PF06160 EzrA: Septation ring 27.2 3.9E+02 0.0084 28.5 9.2 92 6-100 347-438 (560)
224 TIGR02231 conserved hypothetic 27.2 2.6E+02 0.0057 28.9 7.8 17 96-112 182-198 (525)
225 KOG4572 Predicted DNA-binding 27.1 2.1E+02 0.0045 33.7 7.4 52 40-91 1015-1075(1424)
226 KOG0976 Rho/Rac1-interacting s 27.0 2E+02 0.0044 33.6 7.4 86 12-99 50-158 (1265)
227 KOG0239 Kinesin (KAR3 subfamil 26.9 3.6E+02 0.0078 30.0 9.1 60 22-91 246-305 (670)
228 KOG0946 ER-Golgi vesicle-tethe 26.9 2.5E+02 0.0055 32.7 8.0 49 14-62 654-709 (970)
229 PF09787 Golgin_A5: Golgin sub 26.7 4.4E+02 0.0095 27.7 9.4 23 68-90 221-243 (511)
230 PF00435 Spectrin: Spectrin re 26.7 2.6E+02 0.0057 20.5 8.3 60 32-91 35-96 (105)
231 PTZ00446 vacuolar sorting prot 26.5 2.4E+02 0.0052 26.8 6.8 37 19-55 22-58 (191)
232 TIGR01010 BexC_CtrB_KpsE polys 26.4 3.1E+02 0.0068 26.7 7.8 77 13-91 173-265 (362)
233 PRK02119 hypothetical protein; 26.4 2.9E+02 0.0064 22.3 6.4 18 21-38 13-30 (73)
234 PRK02793 phi X174 lysis protei 26.2 2.9E+02 0.0063 22.2 6.3 18 40-57 10-27 (72)
235 PF06785 UPF0242: Uncharacteri 26.1 3E+02 0.0065 29.2 7.9 74 20-93 123-212 (401)
236 KOG0250 DNA repair protein RAD 26.0 4.3E+02 0.0093 31.4 9.7 58 4-61 317-374 (1074)
237 PF12777 MT: Microtubule-bindi 26.0 1.4E+02 0.003 29.5 5.4 37 4-40 222-258 (344)
238 PF09304 Cortex-I_coil: Cortex 25.9 3E+02 0.0066 24.5 6.8 52 7-58 13-64 (107)
239 KOG2129 Uncharacterized conser 25.8 4.3E+02 0.0093 28.9 9.1 93 8-110 134-236 (552)
240 PF03148 Tektin: Tektin family 25.7 3E+02 0.0065 27.9 7.8 40 17-56 258-297 (384)
241 PRK10803 tol-pal system protei 25.5 1.3E+02 0.0028 28.9 5.0 36 26-61 56-91 (263)
242 PF14988 DUF4515: Domain of un 25.5 3.2E+02 0.007 25.9 7.4 58 1-61 9-70 (206)
243 PF07544 Med9: RNA polymerase 25.4 1.4E+02 0.003 24.4 4.4 38 20-61 31-68 (83)
244 KOG2264 Exostosin EXT1L [Signa 25.4 2.8E+02 0.006 31.5 7.8 58 25-91 80-137 (907)
245 KOG4403 Cell surface glycoprot 25.3 4.2E+02 0.0092 29.1 9.0 66 21-86 246-327 (575)
246 KOG0964 Structural maintenance 25.1 3E+02 0.0065 32.7 8.3 82 4-91 793-891 (1200)
247 PF15397 DUF4618: Domain of un 25.1 6.3E+02 0.014 25.3 9.6 41 68-108 200-242 (258)
248 TIGR00414 serS seryl-tRNA synt 24.8 6.5E+02 0.014 25.9 10.0 24 69-92 77-100 (418)
249 KOG2391 Vacuolar sorting prote 24.8 3.5E+02 0.0077 28.5 8.1 61 47-110 244-305 (365)
250 PRK15178 Vi polysaccharide exp 24.7 4.1E+02 0.0088 28.3 8.7 63 27-91 275-337 (434)
251 PF04111 APG6: Autophagy prote 24.3 7E+02 0.015 24.9 9.8 41 19-59 52-92 (314)
252 PF05377 FlaC_arch: Flagella a 24.2 2.1E+02 0.0045 22.8 5.0 39 5-43 2-40 (55)
253 PF09304 Cortex-I_coil: Cortex 24.2 5.2E+02 0.011 23.1 9.2 48 15-62 7-54 (107)
254 PRK04325 hypothetical protein; 24.1 3.3E+02 0.0071 22.0 6.3 38 20-57 12-49 (74)
255 KOG3647 Predicted coiled-coil 24.0 5.5E+02 0.012 26.7 9.1 87 4-93 58-158 (338)
256 PRK13182 racA polar chromosome 24.0 2.6E+02 0.0057 26.0 6.4 55 34-92 81-135 (175)
257 COG5293 Predicted ATPase [Gene 23.7 3.1E+02 0.0067 30.3 7.7 64 30-93 334-404 (591)
258 PF00170 bZIP_1: bZIP transcri 23.7 3.3E+02 0.0071 20.6 6.0 31 6-36 29-59 (64)
259 PF14282 FlxA: FlxA-like prote 23.6 2.7E+02 0.0059 23.6 6.0 14 14-27 23-36 (106)
260 KOG0971 Microtubule-associated 23.5 4.5E+02 0.0097 31.3 9.2 90 4-93 232-357 (1243)
261 PF13094 CENP-Q: CENP-Q, a CEN 23.3 3.1E+02 0.0067 24.1 6.5 48 14-61 24-71 (160)
262 KOG4848 Extracellular matrix-a 23.3 5.2E+02 0.011 25.7 8.4 15 8-22 112-126 (225)
263 PF08232 Striatin: Striatin fa 23.2 2.7E+02 0.0058 24.7 6.1 32 28-59 29-60 (134)
264 PF04849 HAP1_N: HAP1 N-termin 23.2 5E+02 0.011 26.6 8.7 22 70-91 264-285 (306)
265 TIGR03319 YmdA_YtgF conserved 23.1 5.4E+02 0.012 27.5 9.3 19 66-84 143-161 (514)
266 PF09302 XLF: XLF (XRCC4-like 23.1 99 0.0021 27.1 3.4 25 68-92 146-170 (171)
267 KOG3634 Troponin [Cytoskeleton 23.0 3E+02 0.0065 29.0 7.2 56 7-62 212-275 (361)
268 KOG0933 Structural maintenance 22.9 5.2E+02 0.011 30.9 9.6 29 5-33 824-852 (1174)
269 PF05911 DUF869: Plant protein 22.9 5.7E+02 0.012 29.1 9.8 40 19-58 87-126 (769)
270 PF12718 Tropomyosin_1: Tropom 22.9 5.5E+02 0.012 22.9 9.1 32 20-51 38-69 (143)
271 cd00632 Prefoldin_beta Prefold 22.9 1.8E+02 0.004 24.0 4.8 40 19-58 65-104 (105)
272 COG3352 FlaC Putative archaeal 22.8 5.8E+02 0.013 24.2 8.4 74 24-105 72-145 (157)
273 COG3206 GumC Uncharacterized p 22.7 5E+02 0.011 26.3 8.7 75 30-104 334-417 (458)
274 PF02090 SPAM: Salmonella surf 22.5 6E+02 0.013 23.9 8.4 66 22-87 78-146 (147)
275 PRK00286 xseA exodeoxyribonucl 22.3 7.1E+02 0.015 25.2 9.6 22 71-92 368-389 (438)
276 PF09177 Syntaxin-6_N: Syntaxi 22.2 4.4E+02 0.0095 21.5 9.1 55 33-87 34-96 (97)
277 PF01576 Myosin_tail_1: Myosin 22.1 30 0.00064 38.5 0.0 44 8-51 206-249 (859)
278 cd00584 Prefoldin_alpha Prefol 22.0 2.7E+02 0.0058 23.3 5.7 38 24-61 87-124 (129)
279 PF12128 DUF3584: Protein of u 22.0 5E+02 0.011 30.2 9.4 35 5-39 609-643 (1201)
280 cd00584 Prefoldin_alpha Prefol 21.9 4.8E+02 0.01 21.9 9.5 34 6-39 9-42 (129)
281 TIGR02680 conserved hypothetic 21.8 3.1E+02 0.0067 32.4 7.8 95 3-103 742-842 (1353)
282 PLN02320 seryl-tRNA synthetase 21.7 4.9E+02 0.011 28.1 8.7 78 21-108 97-176 (502)
283 KOG3684 Ca2+-activated K+ chan 21.4 4.3E+02 0.0093 28.9 8.2 76 11-96 401-476 (489)
284 PF04880 NUDE_C: NUDE protein, 21.3 88 0.0019 29.2 2.9 43 49-91 4-47 (166)
285 PF07798 DUF1640: Protein of u 20.7 5.5E+02 0.012 23.2 7.7 54 32-93 45-98 (177)
286 KOG0962 DNA repair protein RAD 20.5 5.5E+02 0.012 31.1 9.4 92 5-96 880-999 (1294)
287 PRK05431 seryl-tRNA synthetase 20.3 4.1E+02 0.0088 27.4 7.5 67 21-93 32-98 (425)
288 PF10174 Cast: RIM-binding pro 20.3 7.8E+02 0.017 28.1 10.2 84 4-90 665-757 (775)
289 PF08232 Striatin: Striatin fa 20.3 2E+02 0.0043 25.5 4.7 46 17-62 25-70 (134)
290 PF05667 DUF812: Protein of un 20.1 4.3E+02 0.0093 29.0 8.0 26 6-31 331-356 (594)
291 TIGR00634 recN DNA repair prot 20.1 5.4E+02 0.012 27.1 8.6 81 12-92 156-236 (563)
292 PRK00888 ftsB cell division pr 20.0 84 0.0018 26.8 2.3 23 22-44 32-54 (105)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.22 E-value=0.087 Score=56.87 Aligned_cols=93 Identities=16% Similarity=0.328 Sum_probs=67.3
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID------------------- 62 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~------------------- 62 (417)
|.+..+|+..+..||.+-.....++..|++-+..|....|+-+...+..-+.|.-||++..
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455678888888888888888888888888877776534444444445556666776665
Q ss_pred hccchhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 63 ASKENSQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
.+---.|++.+--.|.++|.||+|||.++..=
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22226789999999999999999999998543
No 2
>PRK11637 AmiB activator; Provisional
Probab=90.60 E-value=2 Score=42.76 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=61.7
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE 83 (417)
-++++++..-.|..++.+|...+.+++.....+..++..|+....+++..+..+..... . -..++..|....++.++.
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~-~-~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ-K-DQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHH
Confidence 46677777888888999999999999999999999999999999998888888876542 1 112344555555555555
Q ss_pred HHHHH
Q 039238 84 IKDLR 88 (417)
Q Consensus 84 iEdlK 88 (417)
|+.|+
T Consensus 249 I~~l~ 253 (428)
T PRK11637 249 IARAE 253 (428)
T ss_pred HHHHH
Confidence 55554
No 3
>PRK11637 AmiB activator; Provisional
Probab=89.02 E-value=3 Score=41.65 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=41.7
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
++.++..|+.|..++...|..+++-+..+..+...++..+...+..|+..+.... .-..++..|..-|.+.+++|+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~--~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN--QLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443331 11235566666666666666666
Q ss_pred HHhhhccc
Q 039238 88 RHQLEYRV 95 (417)
Q Consensus 88 K~rle~P~ 95 (417)
+..|...+
T Consensus 123 ~~~l~~rl 130 (428)
T PRK11637 123 ERLLAAQL 130 (428)
T ss_pred HHHHHHHH
Confidence 55554433
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.57 E-value=3.2 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039238 42 ALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 42 ~lEsAl~EKq~eI~~m~E~~ 61 (417)
.+.+.+..++.+|..|+...
T Consensus 259 ~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHH
Confidence 33444444444444444433
No 5
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=87.96 E-value=2.9 Score=39.77 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=57.4
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------hhHHH
Q 039238 13 YSLRTQKMELDRRLLEMQSTIDSL--------KDEQKALESALEEKQNEIKMQREQIDASKE-------------NSQLI 71 (417)
Q Consensus 13 ~sLr~QKmEL~rkl~emqSTi~sL--------KdeQK~lEsAl~EKq~eI~~m~E~~~a~k~-------------~~Qm~ 71 (417)
-.|+.|-.+|+.+|...+.....- .=-.+++|.-|.=|+.+++.+.+ +.+..+ ..|+.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458888888888888888776651 22367899999999999999987 432221 56888
Q ss_pred HHHHHHHHhHHHHHHHH
Q 039238 72 VLKEILKQREAEIKDLR 88 (417)
Q Consensus 72 aL~E~LkqKEAEiEdlK 88 (417)
.|...|..|+.||+.|+
T Consensus 178 ~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 178 GLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999999998885
No 6
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.67 E-value=9 Score=33.10 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHhh
Q 039238 75 EILKQREAEIKDLRHQL 91 (417)
Q Consensus 75 E~LkqKEAEiEdlK~rl 91 (417)
--++++|-||+-||.+|
T Consensus 133 ~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 133 HELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566777888888776
No 7
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.05 E-value=7.8 Score=34.14 Aligned_cols=56 Identities=25% Similarity=0.452 Sum_probs=28.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ--KALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ--K~lEsAl~EKq~eI~~m~E~~ 61 (417)
.+|.+.|..|+.|-.+|+..+..+++.+.+|..+- .+|...+++.+.+|..|+++.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666655555544332 233344444444444444443
No 8
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.85 E-value=8.9 Score=36.82 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=49.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
++-+++.|+..|--=+-+|...+..++.+-..|.+-.++++.-+.|+-.+...++...
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777877777778888888888888889999999999999999999998887766
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.59 E-value=5 Score=43.15 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqKEAE 83 (417)
++.|++.+...+..-..|.....++......|+.+...|...+++...+|.++.+... ..+.......+++-|+...++
T Consensus 173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~e 252 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAE 252 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444555555555555555554443 111123333444444444455
Q ss_pred HHHHH
Q 039238 84 IKDLR 88 (417)
Q Consensus 84 iEdlK 88 (417)
+|-++
T Consensus 253 lEq~~ 257 (546)
T PF07888_consen 253 LEQLE 257 (546)
T ss_pred HHHHH
Confidence 55443
No 10
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.63 E-value=9.6 Score=33.82 Aligned_cols=91 Identities=19% Similarity=0.330 Sum_probs=68.6
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHh
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQR 80 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqK 80 (417)
|.-.+..-++...|..+.-+|..+....+..|.||...-..||.-|+.-+..+...+.... +.+-.....+|-.=++..
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 3344555566667777777888888888888899988888999999888888888887765 333344566777888888
Q ss_pred HHHHHHHHHhhh
Q 039238 81 EAEIKDLRHQLE 92 (417)
Q Consensus 81 EAEiEdlK~rle 92 (417)
|.+|+..-.+|.
T Consensus 86 Eeele~ae~~L~ 97 (143)
T PF12718_consen 86 EEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHH
Confidence 888888877773
No 11
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.50 E-value=6.5 Score=39.15 Aligned_cols=65 Identities=31% Similarity=0.391 Sum_probs=42.2
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.-|++-++.++|.--..|-++--+||+.++|-|.+|+.++- ....|-|-|+...-|..+||.||+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~---------E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV---------ENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhchhHHHHHHHHHH
Confidence 33444455555555555555555666666666666555542 234678899999999999999984
No 12
>PRK09039 hypothetical protein; Validated
Probab=84.44 E-value=5.2 Score=39.74 Aligned_cols=88 Identities=15% Similarity=0.253 Sum_probs=50.5
Q ss_pred hhhhhhhhhhhhh-------hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH--------------HHHHHHHHhh
Q 039238 4 KNEEMKVKLYSLR-------TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQN--------------EIKMQREQID 62 (417)
Q Consensus 4 K~EEmkAK~~sLr-------~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~--------------eI~~m~E~~~ 62 (417)
+++++.+.|..|. ....+|..+|.+++.++..+......||++++++.. ++..++...+
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 445566667777777777777777777776654422 2222222221
Q ss_pred -----hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 63 -----ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 63 -----a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
...=..|+++|+.-|...+++|.+++.+.
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11115577777777777777776665554
No 13
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.15 E-value=10 Score=35.26 Aligned_cols=89 Identities=26% Similarity=0.384 Sum_probs=70.6
Q ss_pred chhhhhhhhhhhhhhhhhH---HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccc------------
Q 039238 3 RKNEEMKVKLYSLRTQKME---LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKE------------ 66 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmE---L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~------------ 66 (417)
..+++|+..+......|+. ++.++..++..+..|+-+...|+..|...+.+-..+..+-. +..+
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL 148 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777765 56688999999999999999999999999998888877665 2222
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
--.+.+|.+.|.+++|+|.++-...
T Consensus 149 EkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2368899999999999999887664
No 14
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.55 E-value=2.1 Score=45.86 Aligned_cols=82 Identities=28% Similarity=0.429 Sum_probs=59.1
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLK----DEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLK----deQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE 83 (417)
|+-.|..||.+--||..+-..+..+|.-|+ ++++..|++|.+|+.+|..|++.-+.. -.++.+|.++=+..-+|
T Consensus 301 ~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l--~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 301 IRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL--SVELQKLLDTKISLDAE 378 (546)
T ss_pred HHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHhhchHhHHHhH
Confidence 444555555555555555555555555544 568899999999999999999988422 23788888888888999
Q ss_pred HHHHHHhh
Q 039238 84 IKDLRHQL 91 (417)
Q Consensus 84 iEdlK~rl 91 (417)
|.--..-|
T Consensus 379 I~~YRkLL 386 (546)
T KOG0977|consen 379 IAAYRKLL 386 (546)
T ss_pred HHHHHHHh
Confidence 98776666
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.77 E-value=16 Score=34.36 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=32.4
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
+..++.+-+++++.|-.+++.+++|+..-..||..+.+.+.++....
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 34566666777777777777777777777777777777666655433
No 16
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.73 E-value=2.8 Score=37.91 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=4.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
.+..+++.|+.+-.++.+.-.+++.-+..|.++-..+++.+.+++..|..++.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~ 123 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEA 123 (194)
T ss_dssp -------------------------------------------HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 34444455554444444444444444444444444444444444444444443
No 17
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.41 E-value=17 Score=32.88 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=46.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.|--++-+.+|..+...+...+..++.-+++|..+.+.|...|.++|.+|..+.-..
T Consensus 47 aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 47 AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455577778888888888888888888888888888888888888888888887665
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.15 E-value=6.1 Score=37.22 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHH
Q 039238 73 LKEILKQREAEIKDLRH 89 (417)
Q Consensus 73 L~E~LkqKEAEiEdlK~ 89 (417)
++.-+...+|++.+++.
T Consensus 151 ~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 151 AQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334455555553
No 19
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.10 E-value=4.1 Score=35.91 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhHH--HHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 9 KVKLYSLRTQKMEL--DRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 9 kAK~~sLr~QKmEL--~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
|.+||.......+. .-.+.+|...|..|+++-..|++.+.....+++.+....+ ...|...+.+.++|++.
T Consensus 55 KqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 55 KQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-------NEELREEIEELEEEIEE 127 (169)
T ss_pred ceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHH
Confidence 34555554444331 3345556655666666666666655555555555543332 23344445555556666
Q ss_pred HHHhhh
Q 039238 87 LRHQLE 92 (417)
Q Consensus 87 lK~rle 92 (417)
|..+|+
T Consensus 128 l~~kL~ 133 (169)
T PF07106_consen 128 LEEKLE 133 (169)
T ss_pred HHHHHH
Confidence 666654
No 20
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=80.92 E-value=9.5 Score=40.93 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=3.4
Q ss_pred hhHhhhH
Q 039238 384 ILMIQHL 390 (417)
Q Consensus 384 ~~~~~~~ 390 (417)
+++|-|-
T Consensus 1130 ~i~~t~~ 1136 (1164)
T TIGR02169 1130 FIVVSLR 1136 (1164)
T ss_pred EEEEECc
Confidence 4455554
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.39 E-value=11 Score=42.47 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=39.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.+.++..+..|..+..++.+.+-.++.++++|..+...+...+++...+|..+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1163)
T COG1196 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777777777666666666665555544
No 22
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=7.2 Score=42.78 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhccccccc
Q 039238 70 LIVLKEILKQREAEIKDLRHQLEYRVNVWS 99 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle~P~~~~s 99 (417)
+..|.--|+.+.-++|.|+.+|..--++|-
T Consensus 483 I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 483 IERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888888876655544
No 23
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.32 E-value=17 Score=39.33 Aligned_cols=86 Identities=28% Similarity=0.399 Sum_probs=62.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccchhHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID--------ASKENSQLIVLKEILK 78 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--------a~k~~~Qm~aL~E~Lk 78 (417)
+-...+..|..|-.+|.+.+.+++.-+..|+..-+.|+..+++.+.+...+++... +....-.++-|..++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44566777888888888888888888888888888888877777777766665544 2223456788888888
Q ss_pred HhHHHHHHHHHhhh
Q 039238 79 QREAEIKDLRHQLE 92 (417)
Q Consensus 79 qKEAEiEdlK~rle 92 (417)
..++-+..|....+
T Consensus 405 ~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 405 ASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777664
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.50 E-value=7.2 Score=39.17 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 36 LKDEQKALESALEEKQNEIKMQREQID-------ASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 36 LKdeQK~lEsAl~EKq~eI~~m~E~~~-------a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
|....+.+++.+...+..+.++++... -...+..+..|.+.++..+.+++.|.....
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555532111 111166677777777777777777766653
No 25
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.51 E-value=6.9 Score=35.31 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=52.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.+..+.+-+.+||..|..|...+..||.-|..|.--+-.++..|.+++.+-.+|.+...
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~ 125 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778889999999999999999999999999999999999999999888888774
No 26
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=78.50 E-value=14 Score=39.29 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQ 57 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m 57 (417)
+..++.+...+..++..++..+..|..+.+.++..+.+.+.+|..+
T Consensus 805 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444333
No 27
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.45 E-value=20 Score=31.55 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=7.8
Q ss_pred hhHHHHHHhhhhhhhHhhHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKde 39 (417)
-.++.+++.+.++-+..+++.
T Consensus 97 l~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=76.91 E-value=16 Score=38.88 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=14.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSL 36 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sL 36 (417)
++++++.+..|+.+.-+|..+|.+++.-+..|
T Consensus 621 l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l 652 (880)
T PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 29
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.53 E-value=22 Score=32.31 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=44.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
.+-.++..|+..-.+...+|..+++.++.|+.+-+.++..+.||+.-|..++.-..+. .-+...+-+-|...++|=.+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L--~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL--QLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777777777777777777777777777666655433222 23555666666666666666
Q ss_pred HHHhh
Q 039238 87 LRHQL 91 (417)
Q Consensus 87 lK~rl 91 (417)
|=.|+
T Consensus 177 Lv~Rw 181 (194)
T PF08614_consen 177 LVERW 181 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.88 E-value=26 Score=34.24 Aligned_cols=77 Identities=27% Similarity=0.451 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------ccchhHHHHHH
Q 039238 16 RTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDA---------------------SKENSQLIVLK 74 (417)
Q Consensus 16 r~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a---------------------~k~~~Qm~aL~ 74 (417)
+.++..+...+...+.++..|+++-..+|+-+.+-..+|+-.++...+ .+=.+++.-|+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555544444444443333321 11256777777
Q ss_pred HHHHHhHHHHHHHHHhhh
Q 039238 75 EILKQREAEIKDLRHQLE 92 (417)
Q Consensus 75 E~LkqKEAEiEdlK~rle 92 (417)
+.++..+.+|++++.++.
T Consensus 117 ~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 117 EEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777778888877777663
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=75.16 E-value=26 Score=37.33 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=9.4
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhh
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSL 36 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sL 36 (417)
+..|..+..+|...+..++..+..+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 32
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.43 E-value=46 Score=29.59 Aligned_cols=87 Identities=26% Similarity=0.400 Sum_probs=62.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhh--------hHhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------h
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQST--------IDSLKDEQKALESALEEKQNEIKMQREQID------------A 63 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqST--------i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~------------a 63 (417)
-++++..++.+|+.|...+..+|...+.. ..+|+-+-..|-.-++|+..++..|+.... .
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl 86 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKL 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999988887763 346788888999999999999999998775 0
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHh
Q 039238 64 SKENSQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 64 ~k~~~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
.--......++..|..+++.+..++..
T Consensus 87 ~~~~~~~~~l~~~l~~~~~~~~~~r~~ 113 (177)
T PF13870_consen 87 HFLSEELERLKQELKDREEELAKLREE 113 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111334455555555555555554443
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.68 E-value=32 Score=33.64 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 039238 82 AEIKDLRHQ 90 (417)
Q Consensus 82 AEiEdlK~r 90 (417)
.|+..||..
T Consensus 276 ~Ev~~Lk~~ 284 (325)
T PF08317_consen 276 SEVKRLKAK 284 (325)
T ss_pred HHHHHHHHH
Confidence 344444444
No 34
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.61 E-value=30 Score=27.39 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhccchhH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKA---------------LESALEEKQNEIKMQREQIDASKENSQ 69 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~---------------lEsAl~EKq~eI~~m~E~~~a~k~~~Q 69 (417)
..++.+.+..+..|...|.+.+.+.+.|+..|..--.. .+.+..+.+.++..++ ..
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~---------~~ 77 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLE---------KE 77 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHH---------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHH---------HH
Confidence 44555555556666666655555555555544332111 2222333333332222 24
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhh
Q 039238 70 LIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle 92 (417)
+..|...++..+.++++++..|.
T Consensus 78 i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777664
No 35
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.55 E-value=28 Score=36.91 Aligned_cols=79 Identities=27% Similarity=0.275 Sum_probs=55.2
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLI---VLKEILKQREAEIKDLR 88 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~---aL~E~LkqKEAEiEdlK 88 (417)
++.+..+..+|..++.+++..+..+..+...+++++++.+.++..+++.-. ..|++... .|..-+.+.++++.+++
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~-~~GG~~~~~r~~Le~ei~~le~e~~e~~ 282 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR-SEGGDLFEEREQLERQLKEIEAARKANR 282 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888888888888888888888877663 33443333 55555555566666666
Q ss_pred Hhh
Q 039238 89 HQL 91 (417)
Q Consensus 89 ~rl 91 (417)
..+
T Consensus 283 ~~l 285 (650)
T TIGR03185 283 AQL 285 (650)
T ss_pred HHH
Confidence 555
No 36
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.26 E-value=11 Score=38.09 Aligned_cols=78 Identities=32% Similarity=0.409 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
+++.++..|+.+..++...+..++..+..|++..+ .-+...++...+..+.+ .+..|++.|++.++++.+
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~---------~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKE---------KKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554333 22222233333333332 335566667777777777
Q ss_pred HHHhhhcc
Q 039238 87 LRHQLEYR 94 (417)
Q Consensus 87 lK~rle~P 94 (417)
|+..|+..
T Consensus 401 l~~~l~~~ 408 (451)
T PF03961_consen 401 LKEELERS 408 (451)
T ss_pred HHHHHHhh
Confidence 77777655
No 37
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.22 E-value=32 Score=32.12 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=52.2
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHHHhHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDAS-----KENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~-----k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
+.+|+.....+......++.-+.--..+...+|+.+.+.+..|-.|++..-.. .....+..|+--......++++
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555566666777766666666666653211 1123555666666677788888
Q ss_pred HHHhhhccc
Q 039238 87 LRHQLEYRV 95 (417)
Q Consensus 87 lK~rle~P~ 95 (417)
.+.+|+.=+
T Consensus 178 ~e~~F~~~~ 186 (190)
T PF05266_consen 178 AELEFQSVA 186 (190)
T ss_pred HHHHHHHHh
Confidence 888887643
No 38
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.57 E-value=25 Score=40.31 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=44.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 33 IDSLKDEQKALESALEEKQNEIKMQREQID--ASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 33 i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
..++-+.++.|+..|+-.+-++..++.... +.+.+.|.+-|+++|++|-.+..+++.+++
T Consensus 489 ~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~ 550 (980)
T KOG0980|consen 489 TESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREE 550 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445556666666677777777777644 556677999999999999999999988884
No 39
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.53 E-value=11 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQS 31 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqS 31 (417)
+..+-..++.|-.+..|....+.++..
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555555555555555543
No 40
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=71.47 E-value=17 Score=40.56 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=67.4
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH---------Hhh----hccchhHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE---------QID----ASKENSQLIVLKEILK 78 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E---------~~~----a~k~~~Qm~aL~E~Lk 78 (417)
+.+|-+||++|-..|-++.=-.+.|..+|-+-|.-|.--|+.|..+.. +.- .-+-...|+.|+|-+-
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~ 248 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRS 248 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHh
Confidence 367899999999999999888888888888887777666554433321 111 2233568999999999
Q ss_pred HhHHHHHHHHHhhhcccccccc
Q 039238 79 QREAEIKDLRHQLEYRVNVWSV 100 (417)
Q Consensus 79 qKEAEiEdlK~rle~P~~~~sV 100 (417)
.|++|++-|-+.+--.+.-.++
T Consensus 249 eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 249 EKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred hhhhHHHHHHHHHHHHHhhccc
Confidence 9999999999888777776555
No 41
>PRK00846 hypothetical protein; Provisional
Probab=71.14 E-value=27 Score=29.00 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=39.8
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 13 YSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 13 ~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.|||.+.|+ .||.+||+-++..-++--.|-.++.+.|-.|..|++..
T Consensus 4 ~~~~~~~le--~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 4 LSLRDQALE--ARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777655 89999999999999999999999999999888887743
No 42
>PRK09039 hypothetical protein; Validated
Probab=71.10 E-value=35 Score=34.08 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLR 88 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK 88 (417)
.+.+..++..-.|..+.|.-+++-|+.|+...-.||++|+.-+.+....+++.... -..|...|.++-.+|+.++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L-----~~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL-----GRRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhH
Confidence 34444444444555555555555566666555555555555555554444433111 1233444444555667666
Q ss_pred Hhh
Q 039238 89 HQL 91 (417)
Q Consensus 89 ~rl 91 (417)
..|
T Consensus 197 ~~~ 199 (343)
T PRK09039 197 SEF 199 (343)
T ss_pred HHH
Confidence 666
No 43
>PRK02224 chromosome segregation protein; Provisional
Probab=70.69 E-value=31 Score=37.07 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.+..+.+-|.+.+++++++...+.
T Consensus 378 ~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 378 AVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555443
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.66 E-value=30 Score=37.16 Aligned_cols=27 Identities=30% Similarity=0.259 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
-+-..+++.++.+++.|.||...|-|=
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345677888899999999999998554
No 45
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.79 E-value=50 Score=30.17 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHHHHHH
Q 039238 73 LKEILKQREAEIKDLR 88 (417)
Q Consensus 73 L~E~LkqKEAEiEdlK 88 (417)
++..|.+.+..+...+
T Consensus 131 ~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 131 RKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.29 E-value=52 Score=28.43 Aligned_cols=74 Identities=30% Similarity=0.455 Sum_probs=49.4
Q ss_pred hhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 16 RTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 16 r~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..++-.|..++..+.+.++.|+.....|+.-+++++.++...++...+.+. +...+...|+.-..|+.-++..+
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~--~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK--QLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888888888888877776652221 33344444555555555555444
No 47
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.58 E-value=55 Score=32.91 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQ 57 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m 57 (417)
|...+.++++.+.+|+...+.|...+++.+.++..+
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555556555555555555555555433
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.50 E-value=61 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhc
Q 039238 71 IVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 71 ~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
.++-++|-.|..++|+|+-.++|
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHH
Confidence 56667777777777777665543
No 49
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=27 Score=40.00 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=41.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
+.|+.+|+-.|-.+|.+|--+|+.+|+...--.-.+-+|++|+.+|+--++.++....
T Consensus 495 ikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld 552 (1118)
T KOG1029|consen 495 IKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD 552 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777776555555577899999999887777766554
No 50
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=66.83 E-value=47 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHH---------------------------------------HHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQK---------------------------------------ALES 45 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK---------------------------------------~lEs 45 (417)
...++..+..|..+...|...+.++..++.+|+.-.+ .++.
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~e 94 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHH
Confidence 3456667778888888888888888888777776554 6777
Q ss_pred HHHHHHHHHHHHHHHh
Q 039238 46 ALEEKQNEIKMQREQI 61 (417)
Q Consensus 46 Al~EKq~eI~~m~E~~ 61 (417)
|+...+.+|..+.+..
T Consensus 95 A~~~l~~~~~~l~~~~ 110 (140)
T PRK03947 95 AIEILDKRKEELEKAL 110 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776654
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.42 E-value=29 Score=42.40 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE 83 (417)
++++..+-+..|.-+.-+|.++|.+++.-+...+..-..+|.++.+...++.-+++.. ..+ .....+.-++=+.+|+|
T Consensus 1084 k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L-ee~-~~~t~~q~e~~~k~e~e 1161 (1930)
T KOG0161|consen 1084 KLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL-EEQ-GGTTAAQLELNKKREAE 1161 (1930)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-hhhHHHHHHHHHHHHHH
Confidence 4444444444444455555555555555555555555555555555555555555544 122 23445555556666777
Q ss_pred HHHHHHhhhc
Q 039238 84 IKDLRHQLEY 93 (417)
Q Consensus 84 iEdlK~rle~ 93 (417)
+..|+..++.
T Consensus 1162 ~~~l~~~lee 1171 (1930)
T KOG0161|consen 1162 VQKLRRDLEE 1171 (1930)
T ss_pred HHHHHHHHHH
Confidence 7666666643
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.16 E-value=38 Score=36.73 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL 43 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l 43 (417)
+|......|..+...|..++..|++.+...+.+...|
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333333333
No 53
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.99 E-value=36 Score=38.08 Aligned_cols=57 Identities=33% Similarity=0.453 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
-+++.++-.|..+|.+|.-.+...+.-+-+++..-+++|..|++.+.++...++...
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s 648 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNS 648 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888888888888888888888888888888888888888887777664
No 54
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.65 E-value=65 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.....|.+.+++.+..+..|.+-.+
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655443
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.65 E-value=39 Score=39.36 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=21.3
Q ss_pred HHHHHHhhhhhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQ-KALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQ-K~lEsAl~EKq~eI~~m~E~~ 61 (417)
+++..+..++-+|..++.+- +.|.+-+.|.++.+++++...
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444444444444433 555666666666666665544
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.52 E-value=97 Score=31.71 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=66.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqKEAE 83 (417)
++.|+--++-++.+|..|...|-+++..-|-|.--...-+..|+.-..++++--|+.- ..++-|.-..|-|..+....|
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556777888889999999999999887777776666666677777788887777665 677777888888888887777
Q ss_pred HHHHHHhh
Q 039238 84 IKDLRHQL 91 (417)
Q Consensus 84 iEdlK~rl 91 (417)
--||+.-|
T Consensus 173 ardlrqel 180 (333)
T KOG1853|consen 173 ARDLRQEL 180 (333)
T ss_pred HHHHHHHH
Confidence 77766544
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.97 E-value=52 Score=36.31 Aligned_cols=88 Identities=26% Similarity=0.427 Sum_probs=58.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hccc---hhH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-------------ASKE---NSQ 69 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-------------a~k~---~~Q 69 (417)
+|++..+-.|..|+-....+|.+++..+.+|...++.|..-|++-...-..+.++.. +..| ..+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 567777888888888888888888888888887777665555443222222222221 1111 345
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 70 LIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+..+.+-|++..+-|+.+|.++++
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888888888866
No 58
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.72 E-value=60 Score=30.97 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=18.3
Q ss_pred hhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 039238 14 SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI 54 (417)
Q Consensus 14 sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI 54 (417)
.+..++..|...+..+++.+..+....+.+++.+...+..+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333
No 59
>PRK02224 chromosome segregation protein; Provisional
Probab=63.51 E-value=52 Score=35.40 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=16.0
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI 54 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI 54 (417)
+..|..+..+|...+..++ .+..|.++-+.+++++.+.+.++
T Consensus 574 ~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~ 615 (880)
T PRK02224 574 VAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333 23333333334444444333333
No 60
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=63.33 E-value=40 Score=33.21 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH---------HHHHHHHHHHHHHHHHHhh------------
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL---------ESALEEKQNEIKMQREQID------------ 62 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l---------EsAl~EKq~eI~~m~E~~~------------ 62 (417)
+.+.....+..|..|--+++.+|...+.-+...+.+.+.+ -+.|.+.+.++...+....
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 244 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGK 244 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4455555666677777777777777766666655544332 1122222222222221110
Q ss_pred ----hccchhHHHHHHHHHHHhHHHHHHHHHhhhcccccccccCCCCCCccc
Q 039238 63 ----ASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRK 110 (417)
Q Consensus 63 ----a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~sVstddPSnp~~ 110 (417)
.....+.+..|+.-|.+.|+++.++..++ .|.+|.+
T Consensus 245 ~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y------------~~~hP~v 284 (444)
T TIGR03017 245 DALPEVIANPIIQNLKTDIARAESKLAELSQRL------------GPNHPQY 284 (444)
T ss_pred ccchhhhcChHHHHHHHHHHHHHHHHHHHHHHh------------CCCCcHH
Confidence 11134467788888899999999998888 6677777
No 61
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.23 E-value=94 Score=31.76 Aligned_cols=100 Identities=26% Similarity=0.373 Sum_probs=51.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHhHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQ-STIDSLKDEQKALESALEEKQNEIKMQREQIDASKEN---SQLIVLKEILKQREA 82 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emq-STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~---~Qm~aL~E~LkqKEA 82 (417)
.|-.|+.-||.+|.+|...|..=| .-|.-|.-.-..|+....-++.++.+|..-. +.-++ -.=.+|---|+++=.
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EK-VdlEn~LE~EQE~lvN~L~Kqm~ 188 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREK-VDLENTLEQEQEALVNRLWKQMD 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888888877776422 3344444443444444444444444443221 11111 012345555666666
Q ss_pred HHHHHHHhhhcccccccccCCCCCCccc
Q 039238 83 EIKDLRHQLEYRVNVWSVSADDPSNPRK 110 (417)
Q Consensus 83 EiEdlK~rle~P~~~~sVstddPSnp~~ 110 (417)
.|+.-|.+|+..+.-+ || +|.+|.-
T Consensus 189 ~l~~eKr~Lq~~l~~~-~s--~~~s~~d 213 (310)
T PF09755_consen 189 KLEAEKRRLQEKLEQP-VS--APPSPRD 213 (310)
T ss_pred HHHHHHHHHHHHHccc-cC--CCCCcch
Confidence 6666666666655542 44 4666654
No 62
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.09 E-value=77 Score=29.72 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=50.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhccchhHHHHHHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEK--------------QNEIKMQREQIDASKENSQLIVLKE 75 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EK--------------q~eI~~m~E~~~a~k~~~Qm~aL~E 75 (417)
-+|..|+++-.+|.+++.++.--...|+.-|+-.+.||.-. .++|+.+++.....+ .+.-++.-
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q--~~~r~~~~ 89 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQ--EQERELER 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 46778888888888888888888888888888888777433 233334443332221 23444555
Q ss_pred HHHHhHHHHHHHHHhh
Q 039238 76 ILKQREAEIKDLRHQL 91 (417)
Q Consensus 76 ~LkqKEAEiEdlK~rl 91 (417)
-|+.++++|.-++..+
T Consensus 90 klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 90 KLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666665554444
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.04 E-value=72 Score=29.75 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 70 LIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
-.+|..-+.+.+.|-.+|..+|+.
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777777777754
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.93 E-value=84 Score=29.46 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=42.8
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
...++..+--|+-+|...+..+...+++|+...+.|++.++..+.+|..+++...
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888888888888888888888888888887777664
No 65
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.87 E-value=28 Score=29.06 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
..|+|..||.+++.+++-=-++--+|-.+++|.+-.|..|+..-
T Consensus 2 ~~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 2 QDMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999998888643
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.77 E-value=49 Score=36.48 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=34.4
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
||.++|+|+-|+..|-.+|-.=+..+..||--+.....---.+|+-|.+-...-+.-.++
T Consensus 465 lr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~ 524 (697)
T PF09726_consen 465 LRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEK 524 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 355677777777777666655555555555444444444446777777665554444343
No 67
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.63 E-value=57 Score=28.04 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=40.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIK 85 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiE 85 (417)
+.+.+....|-.+..++..+|-++.+.+..+..+-+.|++.|.+++.+...+-..- +...=.+.|.....+-|++=|
T Consensus 37 ~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~---s~~~l~~~L~~~~~e~eeeSe 113 (150)
T PF07200_consen 37 EELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY---SPDALLARLQAAASEAEEESE 113 (150)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555566666677778888888887666553333 111122334444445555555
Q ss_pred HHHHhh
Q 039238 86 DLRHQL 91 (417)
Q Consensus 86 dlK~rl 91 (417)
.|-..|
T Consensus 114 ~lae~f 119 (150)
T PF07200_consen 114 ELAEEF 119 (150)
T ss_dssp HHC-S-
T ss_pred HHHHHH
Confidence 554443
No 68
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.07 E-value=38 Score=38.48 Aligned_cols=63 Identities=37% Similarity=0.538 Sum_probs=41.9
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hccchhHHHHHHHHH
Q 039238 24 RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID--------------------------ASKENSQLIVLKEIL 77 (417)
Q Consensus 24 rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--------------------------a~k~~~Qm~aL~E~L 77 (417)
.+..||--+|+++|+|-|.+=..|.||..+|..-+..-. +.+++ ..|.=-|
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN---~iL~itl 531 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN---QILGITL 531 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh---hHhhhHH
Confidence 333445567778889999888889888887765443322 22222 2455569
Q ss_pred HHhHHHHHHHHH
Q 039238 78 KQREAEIKDLRH 89 (417)
Q Consensus 78 kqKEAEiEdlK~ 89 (417)
+|+.|||+-|+.
T Consensus 532 rQrDaEi~RL~e 543 (861)
T PF15254_consen 532 RQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.74 E-value=37 Score=32.67 Aligned_cols=82 Identities=26% Similarity=0.386 Sum_probs=44.5
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------h-----ccchhHHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-------A-----SKENSQLIVLKEILKQ 79 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-------a-----~k~~~Qm~aL~E~Lkq 79 (417)
|+-|..|--|....|.-=-+-|-+||-.-+++-+.+..+++.+..++.... . ..-..+...|++-+-+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 444444444444444333344444444444444444444444444443321 0 0001245678899999
Q ss_pred hHHHHHHHHHhhhc
Q 039238 80 REAEIKDLRHQLEY 93 (417)
Q Consensus 80 KEAEiEdlK~rle~ 93 (417)
.++||-+|+.-+..
T Consensus 92 le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 92 LEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999988854
No 70
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.98 E-value=40 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.+..+..-|+..++.+..|....+
T Consensus 475 ~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 475 ELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555544
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.09 E-value=67 Score=31.50 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 039238 70 LIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rl 91 (417)
+.++.+..++-.++|.++...+
T Consensus 246 i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 246 IEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 72
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.54 E-value=63 Score=32.94 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIK 85 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiE 85 (417)
+.+-....+++.+..+...+..+....++.++.+-..|=..|+... .+|+|++...+.+..+.-++..|.+...||-
T Consensus 269 e~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK---~emeerg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 269 EPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK---QEMEERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555444433333332 3577777777778889999999999999998
Q ss_pred HHHHh
Q 039238 86 DLRHQ 90 (417)
Q Consensus 86 dlK~r 90 (417)
++--|
T Consensus 346 qMdvr 350 (359)
T PF10498_consen 346 QMDVR 350 (359)
T ss_pred Hhhhh
Confidence 76544
No 73
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.66 E-value=26 Score=40.58 Aligned_cols=90 Identities=23% Similarity=0.186 Sum_probs=54.9
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHhh--------
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ-----------------KALESALEEKQNEIKMQREQID-------- 62 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ-----------------K~lEsAl~EKq~eI~~m~E~~~-------- 62 (417)
.+-.+..|+.+|.-|.+++-.|++||+-|+..- =.||--....+.+|..|++...
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Es 487 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQES 487 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888888776321 1122222233333333332221
Q ss_pred -------hccchhHH-HHHHHHHHHhHHHHHHHHHhhhccccc
Q 039238 63 -------ASKENSQL-IVLKEILKQREAEIKDLRHQLEYRVNV 97 (417)
Q Consensus 63 -------a~k~~~Qm-~aL~E~LkqKEAEiEdlK~rle~P~~~ 97 (417)
.-.+-|+. .+.+|++++++|++|-+-.+.+.-++|
T Consensus 488 n~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 488 NRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11223444 578999999999999887776666665
No 74
>PRK00295 hypothetical protein; Provisional
Probab=58.51 E-value=33 Score=27.29 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=33.0
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
|.+..+|.+||+-++.+-|+--.|=.++.+.|.+|..|+.
T Consensus 1 ~~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ 40 (68)
T PRK00295 1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQL 40 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888999888888888899999988877764
No 75
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=58.29 E-value=49 Score=35.81 Aligned_cols=87 Identities=24% Similarity=0.367 Sum_probs=61.2
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhccc-----------
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNE---IKMQREQIDASKE----------- 66 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~e---I~~m~E~~~a~k~----------- 66 (417)
+++++|||-.--|-.--+|-++.++|..+|-+ |.++||.|.-.-.||+.= ++-|+..-...++
T Consensus 367 Lk~niEeLIedKY~viLEKnd~~k~lqnLqe~---la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 367 LKENIEELIEDKYRVILEKNDIEKTLQNLQEA---LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 36778888877888888999999999999876 567888888777776543 2222222112222
Q ss_pred -hhHHHHHHHHHHHhHHHHHHHHHh
Q 039238 67 -NSQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 67 -~~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
-.|-+.+--.|-+||.|||-|...
T Consensus 444 svsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346667778899999999987653
No 76
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.12 E-value=1.1e+02 Score=29.26 Aligned_cols=90 Identities=22% Similarity=0.404 Sum_probs=50.6
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH---HHHHHHHHHhh-----hccc--------
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQ---NEIKMQREQID-----ASKE-------- 66 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq---~eI~~m~E~~~-----a~k~-------- 66 (417)
|+..||..+++.+-.+-......|.+.+.|+.-|--..+.+|.+-.+.+ .+..++.+... ...+
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777777777666666655433332 23333322222 0000
Q ss_pred ---hhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 67 ---NSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 67 ---~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
...+..|.+-.+.+++|.+.|+..+.
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344455556667777766666553
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.89 E-value=1.1e+02 Score=26.95 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.+.++..-+...++++++|..|.
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554
No 78
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.72 E-value=96 Score=24.99 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=47.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.|++.+.+||+.-.-+.|++.-.+.....|..|--...+.|..+=.+|..+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999988888888888888887777655
No 79
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.33 E-value=40 Score=27.09 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=34.8
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
+++..||.+||+-++.+-++--.|=.++.+.|..|..|+.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~ 43 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRD 43 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999998877764
No 80
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=56.83 E-value=49 Score=32.44 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDAS--------KENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~--------k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
....+|..|..--..|.++-..||+.++|++.+|..|....... ..+..-...-|+|++-|.||++|..++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777778888888888888886554311 123345678899999999999998776
No 81
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.83 E-value=46 Score=26.25 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|..||.+||+-++++-++-..|-.++.+.|.+|..|+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888877776543
No 82
>PRK02119 hypothetical protein; Provisional
Probab=56.03 E-value=77 Score=25.61 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
.+..||.+||+.++.+-|+--.|=.++.+.|.+|..|+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788999999999999988898999999988877764
No 83
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.86 E-value=89 Score=27.44 Aligned_cols=61 Identities=28% Similarity=0.280 Sum_probs=52.7
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILK 78 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~Lk 78 (417)
.+-||.|-.-|+.-|.+-|+..+.|++.-|.-|++|.-.+.|+..+.-+. .|+..=.+.||
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN------~QL~kRV~~LQ 67 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRN------QQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 45699999999999999999999999999999999999988888887776 57666666665
No 84
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.44 E-value=1.6e+02 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=17.3
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALE 48 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~ 48 (417)
..+..+|.+|+..+..+.+..|.||.+..
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455666666666666666666665543
No 85
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.43 E-value=39 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQS 31 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqS 31 (417)
.+.+-..++.|-.|..|...-+.++..
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666677776666666654
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.25 E-value=1e+02 Score=29.43 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
++..+..-|.+.+++++.++..+.+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666667777777766654
No 87
>PRK00736 hypothetical protein; Provisional
Probab=54.10 E-value=43 Score=26.65 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=32.2
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
|.+..||.++|+-++.+-++--.|=.++.+.|..|..|+.
T Consensus 1 ~~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ 40 (68)
T PRK00736 1 MDAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRK 40 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888877764
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.61 E-value=1e+02 Score=32.59 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=50.7
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.-++.+++.+..|..++-.+...-.++.++++-++.++..|...+.|++.-..++....
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l 219 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887777665544
No 89
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.57 E-value=1.3e+02 Score=30.38 Aligned_cols=56 Identities=34% Similarity=0.425 Sum_probs=33.6
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHH-------HHHHHhhhccchhHHHHHHHHHHHhHHHHH
Q 039238 28 EMQSTIDSLKDEQKALESALEEKQNEIK-------MQREQIDASKENSQLIVLKEILKQREAEIK 85 (417)
Q Consensus 28 emqSTi~sLKdeQK~lEsAl~EKq~eI~-------~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiE 85 (417)
-|.=-|+.|||.--+||-.|.+.+-+++ .++.... .=..+...|++-|+++..-|+
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d--~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD--SLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888887777776653 2222221 113456666777766666664
No 90
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.56 E-value=92 Score=31.52 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=44.3
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHH------------HHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEK------------QNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EK------------q~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.+.+++..++.|+.+-..+++.+.+. +.++.++.+.. ...-..++..+..-|...+++++.++.++.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQ-LAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555553 44555555444 223355777778888888888888888886
Q ss_pred ccccc
Q 039238 93 YRVNV 97 (417)
Q Consensus 93 ~P~~~ 97 (417)
+-...
T Consensus 316 ~~~I~ 320 (457)
T TIGR01000 316 KGVIK 320 (457)
T ss_pred CCEEE
Confidence 65543
No 91
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=53.55 E-value=6.1 Score=33.77 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=31.9
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
-.+|..|.++--.+...-..|...++++...|++||..|...+..|..+-
T Consensus 56 ~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~ 105 (116)
T PF05064_consen 56 GEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLL 105 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777777777777766555554443
No 92
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.55 E-value=67 Score=35.72 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=16.5
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde 39 (417)
+++.++..++.|...-++|++.|..+++-+++++.+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.53 E-value=70 Score=39.41 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHHHHHHHHHHHhHHHHHHHHHh
Q 039238 16 RTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-----ASKENSQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 16 r~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-----a~k~~~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
..++.+|.+.++.-++.+..|.-.-..+.+.+...+-.|++++.... ...+..+.+-+..-+....+++++|+++
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444444444444444444444333 2223334444555566677899999999
Q ss_pred hhcc
Q 039238 91 LEYR 94 (417)
Q Consensus 91 le~P 94 (417)
|++-
T Consensus 1141 Lee~ 1144 (1930)
T KOG0161|consen 1141 LEEQ 1144 (1930)
T ss_pred HHHH
Confidence 9765
No 94
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=53.35 E-value=1.3e+02 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSL 36 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sL 36 (417)
+.++..+..|..+..+|...+.+++.++..|
T Consensus 9 ~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 9 QILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555554
No 95
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=52.68 E-value=1.9e+02 Score=28.61 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 039238 35 SLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 35 sLKdeQK~lEsAl~EKq~eI~ 55 (417)
.++.....|++.+++.+.++.
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 96
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.62 E-value=94 Score=26.02 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=36.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH---------------HHHHHHHHHHHHHHHHHHHHHh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE---------------QKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde---------------QK~lEsAl~EKq~eI~~m~E~~ 61 (417)
...+..++..|..|+..|.+.+.+.+.|++.|..- .+..+.|......+|..+....
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777778888888887777777653 2334555555566666554433
No 97
>PRK11519 tyrosine kinase; Provisional
Probab=52.37 E-value=61 Score=34.98 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=23.3
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ 40 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ 40 (417)
+|.++....+.-|..|--+|+.+|.+.|..+...+.+.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555556666666666666666666666665555443
No 98
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.99 E-value=29 Score=34.92 Aligned_cols=42 Identities=29% Similarity=0.523 Sum_probs=27.4
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.|..+|.+++.-|+.|.|....++.++.+++.+|..+.+...
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777766655543
No 99
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=51.68 E-value=1.1e+02 Score=26.00 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=16.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhhHhhHHH
Q 039238 11 KLYSLRTQKMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 11 K~~sLr~QKmEL~rkl~emqSTi~sLKde 39 (417)
.|+.|+.+...+..+|..-+.++..|++.
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~ 54 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQ 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555543
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.26 E-value=87 Score=37.50 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=41.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
..++...++..+..+..++...+..++..+..|+.+.-.++.++.+.+.++.+.+....
T Consensus 363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777777777777777777777777777777777665544
No 101
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=50.82 E-value=25 Score=37.75 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhccccc
Q 039238 70 LIVLKEILKQREAEIKDLRHQLEYRVNV 97 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle~P~~~ 97 (417)
-..|.|.|.++|.|||.|-..|++-|-|
T Consensus 398 ~~~~~e~i~~kE~eLe~L~~elDdkvRF 425 (492)
T PF06273_consen 398 EESLREEISQKEKELEKLTRELDDKVRF 425 (492)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3899999999999999999999988887
No 102
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.64 E-value=1.9e+02 Score=26.11 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKD 38 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKd 38 (417)
.|++...+..++..|+..|.+-..+|..|+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555555554
No 103
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=50.24 E-value=1.2e+02 Score=23.46 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 35 SLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 35 sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.=+..-..+|..|.|-+.-|.+|.--.... .+.....++.-|+.-.+++..||..|.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~-p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL-PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555788999999999999998877533 557889999999999999999998764
No 104
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=50.10 E-value=29 Score=34.99 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=18.2
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESAL-----------EEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl-----------~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
+.++|...+.+|..-+.+||+.|.++-..+ ....++|..+.++..... +.+..+...++.++..+..
T Consensus 99 ~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lE--d~~~~i~~~~~~~~k~i~~ 176 (370)
T PF02994_consen 99 ELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELE--DRIEEIEQAIKELEKRIKK 176 (370)
T ss_dssp -------------------H-------------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHhhHHHHHHHHHHH
Confidence 444555566666666666665443221111 122345555555442111 2333444444455555555
Q ss_pred HHHhhh
Q 039238 87 LRHQLE 92 (417)
Q Consensus 87 lK~rle 92 (417)
+..+++
T Consensus 177 l~~kl~ 182 (370)
T PF02994_consen 177 LEDKLD 182 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 105
>PRK04325 hypothetical protein; Provisional
Probab=50.08 E-value=1.1e+02 Score=24.73 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
+..+|.+||+-++.+-++--.|=.++.+.|-+|..|+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ 44 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQA 44 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888888888888888877764
No 106
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.01 E-value=1.9e+02 Score=27.84 Aligned_cols=87 Identities=24% Similarity=0.273 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hccc--------------
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID----ASKE-------------- 66 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~----a~k~-------------- 66 (417)
++.++...-.|.---.+....+.+...+++.+.-.||.+|.-|.+.+..+.-++++.. ++.+
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3334433334444444555666677777778888888888888888888888888776 1111
Q ss_pred -------------hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 67 -------------NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 67 -------------~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..+...|+..+...|..|.++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777665
No 107
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=49.80 E-value=1e+02 Score=24.80 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=31.7
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI 54 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI 54 (417)
+++.|=-+.|.-|..+=.-|-.+......||..|+..-+++|..+.+....|
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666665555544433
No 108
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.69 E-value=1.5e+02 Score=27.75 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
....=...|..++.+.++...|.+.+.....++..++....
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~ 73 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNE 73 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567788888888888888888888888888776653
No 109
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.58 E-value=25 Score=37.48 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039238 38 DEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 38 deQK~lEsAl~EKq~eI~~m~E~ 60 (417)
...+.+|+.|++++.+|.+|++.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555443
No 110
>PF15294 Leu_zip: Leucine zipper
Probab=49.19 E-value=86 Score=31.52 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=58.9
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hccc----hhHHHHHHHHH---
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID---ASKE----NSQLIVLKEIL--- 77 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~---a~k~----~~Qm~aL~E~L--- 77 (417)
+..-|..|..+...|+.||+.++.-.++.-++-+.|+++|.+.++..--.+-+.. ..+. ..+|++++.-|
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999999999999994443333211 1111 44677776544
Q ss_pred -HHhHHHHHHHHHhh
Q 039238 78 -KQREAEIKDLRHQL 91 (417)
Q Consensus 78 -kqKEAEiEdlK~rl 91 (417)
..++...+.|+.-|
T Consensus 210 ~~d~~~~~k~L~e~L 224 (278)
T PF15294_consen 210 LQDKESQQKALEETL 224 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 33444444444433
No 111
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.04 E-value=1.1e+02 Score=30.39 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=49.1
Q ss_pred hhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238 15 LRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 15 Lr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
|+..-..+...|..++.-+++|..+++.||+.++-|..|+...+.+..+.+.- .-|.|+=..+.|+||..+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v--RPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV--RPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHH
Confidence 33444555666677777788888888888888888888888777777644331 236677777777777665
No 112
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=47.81 E-value=94 Score=31.14 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLR 88 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK 88 (417)
.|+....+.-.++..|...|..|.+.|..-+.=|+.|++.. ...+..+..+++..|+-|+.|+
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~-----~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKF-----KENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccC
Confidence 46777778888888899999999999988888888888874 3457777777777777777653
No 113
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.78 E-value=93 Score=28.80 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.....+.+-|++.+++++.|+..|+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777765
No 114
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=47.67 E-value=1.6e+02 Score=24.40 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=42.9
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH-HHHHHHhHHHHHHHHHhhhc
Q 039238 29 MQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVL-KEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 29 mqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL-~E~LkqKEAEiEdlK~rle~ 93 (417)
+.+-+.++|..+.++|..+.-.-+|+.+++.+- ++|..= +.+=++-|.||-.||+.|+.
T Consensus 16 ~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v------~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 16 LSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV------YELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466777888999999999999999998887 344322 23334569999999998864
No 115
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.50 E-value=1.3e+02 Score=34.82 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=12.4
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLK 37 (417)
..++..|..+...+...|..+|..+..|.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333
No 116
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.38 E-value=1.6e+02 Score=31.09 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
+++..+..|..+..++.....+++..+.+|.........-|..-+..|+.++.......=|.--....+.+..-..+|++
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~ 459 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEA 459 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666667777776666666666666666665554333111111223445666677788888
Q ss_pred HHHhhh
Q 039238 87 LRHQLE 92 (417)
Q Consensus 87 lK~rle 92 (417)
|+..|.
T Consensus 460 l~~~L~ 465 (569)
T PRK04778 460 LAEELE 465 (569)
T ss_pred HHHHhc
Confidence 888874
No 117
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.20 E-value=11 Score=31.08 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=23.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
++.+-..+..|..+..+|...+.+++.-+..++.....|..+|..-|.....|...+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A 83 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEA 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHH
Confidence 566777888888899999999999999998888888888888776666655555444
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.09 E-value=1.9e+02 Score=28.95 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=47.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH----HHHHHHHHhhh---------ccchhHH-
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQN----EIKMQREQIDA---------SKENSQL- 70 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~----eI~~m~E~~~a---------~k~~~Qm- 70 (417)
++-|-+++..+..+-.+++-++.++++-|..|+.+-+.++.-+.+.+. +.|-|+.++++ .+.-..|
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~I 133 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLI 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHH
Confidence 444555555555555555555555555555555555555555555442 44555555541 1111111
Q ss_pred -------------HHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 71 -------------IVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 71 -------------~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
.-|.+.++..+++||+-+..+++-
T Consensus 134 sRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~ 170 (265)
T COG3883 134 SRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDK 170 (265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666777777777776666543
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.94 E-value=1.5e+02 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=12.1
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLL 27 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~ 27 (417)
+++..+.+++..|+.+..++..++.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~ 27 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQ 27 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444433
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.92 E-value=92 Score=33.33 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=4.8
Q ss_pred Ccceeeeec
Q 039238 251 GGMKLEVLD 259 (417)
Q Consensus 251 gg~K~em~~ 259 (417)
.|.++=.+|
T Consensus 574 ~g~rvLlID 582 (754)
T TIGR01005 574 GGKRALLID 582 (754)
T ss_pred CCCeEEEEe
Confidence 445555555
No 121
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.53 E-value=1.8e+02 Score=29.27 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
...|..+.|-|+++|+++-+++.++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999998887
No 122
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.19 E-value=1.2e+02 Score=37.45 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALES 45 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEs 45 (417)
|+.||..++..|....+.|.+.+.++.+-++-...+-+.|+.
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877777777777766666665555554
No 123
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.06 E-value=27 Score=26.48 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=13.9
Q ss_pred HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039238 26 LLEMQSTIDSLKDEQKALESALEEKQNEIKMQ 57 (417)
Q Consensus 26 l~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m 57 (417)
+.+|+..++.|..+-..|...+.....++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 124
>PRK04406 hypothetical protein; Provisional
Probab=46.03 E-value=75 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
.+..||.+||+-++.+-++--.|=.++.+.|-+|..|+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ 46 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888888888888888877764
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.86 E-value=1.8e+02 Score=29.11 Aligned_cols=8 Identities=50% Similarity=0.796 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 039238 83 EIKDLRHQ 90 (417)
Q Consensus 83 EiEdlK~r 90 (417)
|+..||..
T Consensus 272 Ei~~Lk~~ 279 (312)
T smart00787 272 EIEKLKEQ 279 (312)
T ss_pred HHHHHHHH
Confidence 34444433
No 126
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.27 E-value=1.7e+02 Score=24.77 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=38.3
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhh--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSL--KDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sL--KdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+..|...-..+++||-.+++.+..| .++--.|+-.+.|...+++-|.++.
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444445588888899999988 7777788888888888888888776
No 127
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.01 E-value=62 Score=27.93 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=26.1
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+.+|..|+.-+++.|..|...++.|+..|.+.++.|+.|-...
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555556666666666666666666666666666655443
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.78 E-value=1.4e+02 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=13.9
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEM 29 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~em 29 (417)
++++++++++..++...-+|..+|..+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 129
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.41 E-value=2.3e+02 Score=30.45 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..+..|+..|.+.++++-++..++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567778888888888888888877
No 130
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.00 E-value=49 Score=35.41 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhh
Q 039238 72 VLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 72 aL~E~LkqKEAEiEdlK~rle 92 (417)
.+.+-|+..|+|+..|+.+++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777764
No 131
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.96 E-value=59 Score=33.05 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
+...|++.+++..+++++|+.++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666655
No 132
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.88 E-value=66 Score=38.15 Aligned_cols=96 Identities=25% Similarity=0.282 Sum_probs=70.0
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------hccchhH
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID------------ASKENSQ 69 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~------------a~k~~~Q 69 (417)
.+++++++.++..+++-+.|.+..|..+..-+.++|++-+..+..|...-.+...|.-... ..+..+.
T Consensus 520 ~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 520 LKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3689999999999999999999999999999999999999999888877766664432211 1222344
Q ss_pred HHHHHHHHHHhHHH-HHHHHHhhhccccc
Q 039238 70 LIVLKEILKQREAE-IKDLRHQLEYRVNV 97 (417)
Q Consensus 70 m~aL~E~LkqKEAE-iEdlK~rle~P~~~ 97 (417)
=.+|.-+.+-||+- |.-+.-||-|=.-|
T Consensus 600 ~kVl~al~r~kesG~i~Gf~GRLGDLg~I 628 (1293)
T KOG0996|consen 600 NKVLDALMRLKESGRIPGFYGRLGDLGAI 628 (1293)
T ss_pred hHHHHHHHHHHHcCCCCcccccccccccc
Confidence 45566666666765 66666666554443
No 133
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.75 E-value=47 Score=33.38 Aligned_cols=46 Identities=33% Similarity=0.459 Sum_probs=36.4
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHH
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA 46 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsA 46 (417)
||+-.+|+|.|+.-+-.+|.+|-..+-++|+-...+.++-|.||-.
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888887777776643
No 134
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=43.50 E-value=1.4e+02 Score=30.38 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHhhhhhhhHhhH-------HH----HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHh
Q 039238 22 LDRRLLEMQSTIDSLK-------DE----QKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 22 L~rkl~emqSTi~sLK-------de----QK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
|.+.|++||-.+.||. +| -|.|.++|+|.++-|..=+....+.=.--+ +--||||.-++.-.|+||..
T Consensus 155 IEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK-~EAmeiL~aRqkkAeeLkrl 233 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVK-AEAMEILDARQKKAEELKRL 233 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6778889998888874 33 377888999998877543333321111111 22378898888888899876
Q ss_pred h
Q 039238 91 L 91 (417)
Q Consensus 91 l 91 (417)
-
T Consensus 234 t 234 (302)
T PF07139_consen 234 T 234 (302)
T ss_pred H
Confidence 5
No 135
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.26 E-value=1.6e+02 Score=34.17 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=49.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH--HHHHHHHHHHHHHHHHHhh-----------------hcc
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL--ESALEEKQNEIKMQREQID-----------------ASK 65 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l--EsAl~EKq~eI~~m~E~~~-----------------a~k 65 (417)
++++.+.+..++.+...|...|..++..-..|+|.-..+ +..+.+.+.+|..|....- ...
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~ 1065 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDL 1065 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555 5566666666665554432 011
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 66 ENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 66 ~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
-..+.+.|..-+++.+++|..|+.-|+.
T Consensus 1066 l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1334455556666777777777776643
No 136
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.71 E-value=1.7e+02 Score=25.00 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=39.0
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 039238 28 EMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 28 emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
=+|=+|.||=.-|.-|-+.+...+.++..+.+ +...|+..+++..+++.-||.
T Consensus 63 LaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~---------~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 63 LAQLSIEYLLHCQEYLSSQLEQLEERLQELQQ---------EIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888877777777776655 346677777777777777764
No 137
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.71 E-value=1.4e+02 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q 039238 68 SQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEd 86 (417)
+++..|+..-+|..++|+.
T Consensus 170 ~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 170 EEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555543
No 138
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.02 E-value=1.3e+02 Score=33.00 Aligned_cols=39 Identities=33% Similarity=0.368 Sum_probs=28.4
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESAL 47 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl 47 (417)
|+++|..=+|+.+||..|.|||.-.-.|.++--+|.++|
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 566677778888999999999887777777764444443
No 139
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.00 E-value=1.9e+02 Score=31.51 Aligned_cols=56 Identities=23% Similarity=0.502 Sum_probs=41.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---------hhHHHHHHHHHHHhHHHHHHHH
Q 039238 33 IDSLKDEQKALESALEEKQNEIKMQREQIDASKE---------NSQLIVLKEILKQREAEIKDLR 88 (417)
Q Consensus 33 i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~---------~~Qm~aL~E~LkqKEAEiEdlK 88 (417)
++....+.+.++..|.+....|+++++-...-.. .++++.|-|-|-+...||+-||
T Consensus 450 L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 450 LESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445566777788888888888876652221 5678999999999999999998
No 140
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=41.91 E-value=2.6e+02 Score=25.43 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhccccccc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEYRVNVWS 99 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~s 99 (417)
+.+..-..|.++|..|++|++-.+ ++.-|+
T Consensus 69 ~~~~~~~~l~~re~~i~rL~~ENe-~lR~Wa 98 (135)
T TIGR03495 69 QLAQARALLAQREQRIERLKRENE-DLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH-HHHHHh
Confidence 456667788999999999987553 345453
No 141
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.88 E-value=2.5e+02 Score=24.96 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=38.1
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh---HHHHHHHHHHHhHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENS---QLIVLKEILKQREAEIKDLR 88 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~---Qm~aL~E~LkqKEAEiEdlK 88 (417)
+..+..+...++..|...+..+..+.++--.+.....-....+.-|+..+....-|+ .+...++-+..++.+|+.|+
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~ 165 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443333333333333333333433332222232 24556777777888888888
Q ss_pred Hhhh
Q 039238 89 HQLE 92 (417)
Q Consensus 89 ~rle 92 (417)
.+++
T Consensus 166 rk~~ 169 (177)
T PF13870_consen 166 RKVE 169 (177)
T ss_pred HHHH
Confidence 7664
No 142
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=41.67 E-value=1.6e+02 Score=29.85 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 35 SLKDEQKALESALEEKQNEIKMQREQIDASKE--NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 35 sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~--~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
...+.+.++-..|+..++++++|+++....+- .+-..-.-.+++++.+|..-+-..|
T Consensus 131 ~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl 189 (301)
T PF06120_consen 131 DATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSL 189 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888889999999887752111 1111222245567777777655544
No 143
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.65 E-value=1.8e+02 Score=26.11 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=24.9
Q ss_pred hccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 63 ASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
..+...++..|++-|+++++|++-||.+.+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999998764
No 144
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.57 E-value=2e+02 Score=27.59 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=53.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhH-------HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLK-------DEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEI 76 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLK-------deQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~ 76 (417)
+...|..+.-.+..++..|..+..+++..+.-|. .++-.|++-+.+.+.+|..|.+... .+. .....|..=
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~-~ke-~Ea~~lq~e 111 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE-RKE-EEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHH
Confidence 3456666777777777777777777666666554 4666799999999999999988763 222 244555555
Q ss_pred HHHhHHHHHHHHHhh
Q 039238 77 LKQREAEIKDLRHQL 91 (417)
Q Consensus 77 LkqKEAEiEdlK~rl 91 (417)
|..-...++.-+-.|
T Consensus 112 l~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 112 LEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555555
No 145
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.21 E-value=85 Score=24.95 Aligned_cols=35 Identities=26% Similarity=0.556 Sum_probs=21.9
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~ 55 (417)
||.++|-.+.+++++++.+...|=..+++.+--|+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777777776666655555544443
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.78 E-value=2.1e+02 Score=28.38 Aligned_cols=47 Identities=32% Similarity=0.425 Sum_probs=28.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQN 52 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~ 52 (417)
+++...+..|..+..+|...|.+++..-..|..+...||..+++.+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666665555443
No 147
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=40.39 E-value=3.2e+02 Score=25.71 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLK 37 (417)
+..++.+..+..|...+...+..++..+..++
T Consensus 83 ~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (334)
T TIGR00998 83 AKAEANLAALVRQTKQLEITVQQLQAKVESLK 114 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 148
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.22 E-value=2e+02 Score=23.23 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039238 43 LESALEEKQNEIKMQREQID 62 (417)
Q Consensus 43 lEsAl~EKq~eI~~m~E~~~ 62 (417)
|+..|+||...|.++.+-+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGe 22 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGE 22 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555554443
No 149
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.21 E-value=2.7e+02 Score=28.40 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=45.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE 83 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE 83 (417)
++.|+.|.+-.|+..--+++.+|.++---++....+...+=...+|---++..|-+... .-...+..+.+-+.....+
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~v--e~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFV--ELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH
Confidence 45566677777777777777777666655555555555555555555555555554442 1111333344444444444
Q ss_pred HHHHHH
Q 039238 84 IKDLRH 89 (417)
Q Consensus 84 iEdlK~ 89 (417)
|.++-.
T Consensus 237 lre~~k 242 (294)
T COG1340 237 LRELEK 242 (294)
T ss_pred HHHHHH
Confidence 444433
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=40.19 E-value=1.3e+02 Score=37.04 Aligned_cols=72 Identities=25% Similarity=0.406 Sum_probs=35.3
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc------------chhHHHHHHHHHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-------ASK------------ENSQLIVLKEILKQ 79 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-------a~k------------~~~Qm~aL~E~Lkq 79 (417)
.-++..++..++.-+++|-++-+.++.-|...-+++.+|...-. ++. --.|-..|++.|.+
T Consensus 54 ~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~ 133 (1822)
T KOG4674|consen 54 LSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLER 133 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433222 000 02345566777777
Q ss_pred hHHHHHHHHHh
Q 039238 80 REAEIKDLRHQ 90 (417)
Q Consensus 80 KEAEiEdlK~r 90 (417)
+.||||.+.+-
T Consensus 134 ~~~ele~l~~~ 144 (1822)
T KOG4674|consen 134 QKAELEALESE 144 (1822)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.02 E-value=2e+02 Score=23.46 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEE 49 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~E 49 (417)
+.|.+||..+=..-.-|+..+.+++.--.+|+++...|......
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555555444555555555555544454444444443333
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=39.38 E-value=39 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
.+.+|+..+..|..+-..|.+.+...+.++..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444443
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.11 E-value=99 Score=33.79 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=46.7
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHH-------hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRL-------LEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl-------~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|-.+.||.-..-.|.++||||+..| .+|+..+..|...-..|...|+.|..++..+++..
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4457788888889999999998876 37777777777777777888888877777766653
No 154
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.00 E-value=1.8e+02 Score=23.65 Aligned_cols=69 Identities=26% Similarity=0.395 Sum_probs=37.0
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI-DASKENSQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~-~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
--+|......++..++.|+.+++.+-..+...-. .+ .+..--.++..|++-|+..|+++.++...++.-
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~-------~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKK-------AGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------TTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666655544433221 10 011112355667777777777777777766543
No 155
>PRK11519 tyrosine kinase; Provisional
Probab=38.34 E-value=1.9e+02 Score=31.40 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
+.++....+.|++.|..+-..++..|++.+..+...+.......-..++.++.+.+...++++-+|
T Consensus 258 ~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l 323 (719)
T PRK11519 258 IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNEL 323 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888888888888888888888888888876642222234444444444444444443
No 156
>PRK04406 hypothetical protein; Provisional
Probab=38.30 E-value=1.4e+02 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=13.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 32 TIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 32 Ti~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
|++.|.+.--.||+-++-.+.-|..|-+
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELND 32 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555444444444433
No 157
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.16 E-value=1.5e+02 Score=34.51 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=32.1
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQ 51 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq 51 (417)
+|+|..-+...++...+|..+|.|+|.++-.|.-|-.+|+.-|.-+|
T Consensus 474 ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 45555555556666677778888888888887777777766555444
No 158
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.14 E-value=1.3e+02 Score=35.78 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=52.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH---hh--hccchhHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ---ID--ASKENSQLIVLKEILKQ 79 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~---~~--a~k~~~Qm~aL~E~Lkq 79 (417)
..+++-+.-+++....+|.++=..++.++..|..--|.||..+++-..++.-+.-. .. -.+-...+..|.++|.+
T Consensus 379 ~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~ 458 (1293)
T KOG0996|consen 379 AKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEK 458 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777777666666666655544443333221 11 12224456677777777
Q ss_pred hHHHHHHHHHhhh
Q 039238 80 REAEIKDLRHQLE 92 (417)
Q Consensus 80 KEAEiEdlK~rle 92 (417)
-+.+++|++-.|+
T Consensus 459 ~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 459 EERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776664
No 159
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.12 E-value=1.9e+02 Score=28.93 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=45.0
Q ss_pred hhhhHHHHH-HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 17 TQKMELDRR-LLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 17 ~QKmEL~rk-l~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+=..++-.. +..-++.++.|..+++.++.-++-.++.|.-.+...... -.++.-+...+++.+.+|++|+.+.
T Consensus 23 ~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~--~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 23 TVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL--QKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 667778888888888888887777777777666655311 2244455555555566666655543
No 160
>PF15294 Leu_zip: Leucine zipper
Probab=37.72 E-value=1.6e+02 Score=29.61 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
..+.-.++++|..|--+|.||+.||.
T Consensus 252 T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 252 TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 55777899999999999999999874
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.48 E-value=2.8e+02 Score=26.90 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=41.0
Q ss_pred cchhhhhhhhhhhhhhhhhHHH---HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 2 KRKNEEMKVKLYSLRTQKMELD---RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~---rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
|.|+.+|......|...--.++ .-|.+...++..|..|.......|..-..-|+-|.-...
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555554443333 457777788888888888888888777777777766553
No 162
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=37.38 E-value=2.8e+02 Score=26.52 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
-+|.+++.+-.|..++-....++-.|+.+..++...-..|+...++-+..++.-...
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 125 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE 125 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 367888888899888888889999999999999999999988887777666654443
No 163
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=37.09 E-value=95 Score=32.63 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=40.7
Q ss_pred hhHhhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 32 TIDSLKDEQKALESALEE-------KQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 32 Ti~sLKdeQK~lEsAl~E-------Kq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
-+|.|||+--++|+.|+| |.+|+.-++-+..+.+ -+|+-|++-|+|++.=||+
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq--~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQ--HKMEELKEGLRQRDELIEE 207 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 368899999999988764 5556655555554443 4899999999999999998
No 164
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.01 E-value=1.6e+02 Score=28.70 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=34.7
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHHHhHHHHHHHHH
Q 039238 30 QSTIDSLKDEQKALESALEEKQNEIKMQREQIDASK-------ENSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 30 qSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k-------~~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
..++..|..+-..++..|.+-+..+...+....... ...++..|..-|...++++.++..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777654111 122344444445555555555544
No 165
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.97 E-value=2.8e+02 Score=24.91 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=26.8
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 13 YSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 13 ~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
.+|+..|.+|..||..+-..++-...-++.+.....+-+..+.+..
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3566666666666666666666655555555555555555544443
No 166
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.50 E-value=1.3e+02 Score=30.33 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 37 KDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 37 KdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
.=+-..|=-.|+|.+-.+.+++.... .+-. +...++..+.-...|+.+|+.-|...
T Consensus 111 ~yqvd~Lkd~lee~eE~~~~~~re~~-eK~~-elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEETLAQLQREYR-EKIR-ELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888888888877662 2222 46677777777777777777776543
No 167
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.49 E-value=2.4e+02 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=19.0
Q ss_pred hccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 63 ASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
++.|| -....++.+...++++..++.+..
T Consensus 178 ~G~Gp-~~~~~~~~~~~~~~~l~~l~~~~~ 206 (301)
T PF14362_consen 178 PGKGP-RYKEKRAQLDAAQAELDTLQAQID 206 (301)
T ss_pred CCCCc-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34443 556667777777788777777653
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.07 E-value=2e+02 Score=33.19 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
+|..++...+..+..+..+++.+|..|...+..|+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~ 641 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELK 641 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433
No 169
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.02 E-value=1.9e+02 Score=34.21 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=67.0
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASK-----ENSQLIVLKEIL 77 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k-----~~~Qm~aL~E~L 77 (417)
.|+++|...|..+|.--.+=...++..+.-...|+..+-.+..+|+..+..+..+..-.++.- =.+|+.+-+.-|
T Consensus 329 ~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~ 408 (1174)
T KOG0933|consen 329 EKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITL 408 (1174)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHH
Confidence 456777777777766666666667777777788899999999999999988887765443111 156888888888
Q ss_pred HHhHHHHHHHHHhhhcc
Q 039238 78 KQREAEIKDLRHQLEYR 94 (417)
Q Consensus 78 kqKEAEiEdlK~rle~P 94 (417)
-+-..+|+-.+.+|++-
T Consensus 409 ~~~~t~~k~a~~k~e~~ 425 (1174)
T KOG0933|consen 409 SEASTEIKQAKLKLEHL 425 (1174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777777654
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=35.99 E-value=3.5e+02 Score=25.41 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|++.|...+......--+..+++.+....+..+...-...|.-++.-++.|..|++..
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 3444555555555555555555555555554444444444444444444444444443
No 171
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=35.68 E-value=1.7e+02 Score=31.76 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.9
Q ss_pred Ccceeeeec
Q 039238 251 GGMKLEVLD 259 (417)
Q Consensus 251 gg~K~em~~ 259 (417)
.|-|+=.+|
T Consensus 559 ~G~rVLlID 567 (726)
T PRK09841 559 SDQKVLFID 567 (726)
T ss_pred CCCeEEEEe
Confidence 345555665
No 172
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.80 E-value=3.8e+02 Score=24.93 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=31.8
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
--|+..-|.++...++.+.-.+|.+|.-+.+.+..+..+..++.
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777778888888888888777777766
No 173
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=2e+02 Score=33.57 Aligned_cols=75 Identities=25% Similarity=0.269 Sum_probs=45.8
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHH--HHHHHHHHHHhh---------hccchhHHHHHHHHHHHhHHHHHH
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESALEEK--QNEIKMQREQID---------ASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EK--q~eI~~m~E~~~---------a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
++-....++.++++-+.-+.+....+..|++-. =.+-+++.+..+ +..|-.+.++....|+++||+|++
T Consensus 213 ~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k~Leqel~~~~~e~~~fP~DGvlrlEk~~ahL~~~ea~i~~ 292 (984)
T COG4717 213 SRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDA 292 (984)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccchhhhccCCchhHHHHHHHHHhhhhhhhhhHH
Confidence 444445555555555555555555555544322 122233333332 445567888888999999999999
Q ss_pred HHHhhh
Q 039238 87 LRHQLE 92 (417)
Q Consensus 87 lK~rle 92 (417)
+-.+|.
T Consensus 293 ~~vrla 298 (984)
T COG4717 293 LLVRLA 298 (984)
T ss_pred HHHHHH
Confidence 999883
No 174
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.49 E-value=2.1e+02 Score=34.35 Aligned_cols=81 Identities=27% Similarity=0.328 Sum_probs=46.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALE-------EKQNEIKMQREQIDASKENSQLIVLKEILKQ 79 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~-------EKq~eI~~m~E~~~a~k~~~Qm~aL~E~Lkq 79 (417)
.+.+-.-.++.+.+++..-+.+++..|.||..+++.+..-+. +.+.+++.+.+...-..=..++..+-..|+|
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq 685 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQ 685 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567888888888889999999998888776654443 2333344443321111123344445555555
Q ss_pred hHHHHHHH
Q 039238 80 REAEIKDL 87 (417)
Q Consensus 80 KEAEiEdl 87 (417)
-.||-..+
T Consensus 686 ~~~E~~~~ 693 (1317)
T KOG0612|consen 686 ENAEHHRL 693 (1317)
T ss_pred HHHHHHHH
Confidence 55544443
No 175
>PRK00736 hypothetical protein; Provisional
Probab=34.37 E-value=1.7e+02 Score=23.25 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=28.9
Q ss_pred hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 17 TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 17 ~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
..-++|..+|.-.+-||+.|-+.--.--..+...+.+++.|.++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777776666555555666666666665554
No 176
>PRK00295 hypothetical protein; Provisional
Probab=34.17 E-value=1.8e+02 Score=23.23 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=23.4
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
.-++|..+|.-.+-||+.|-+.--..-..+...+.++++|.++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555444444445555555555443
No 177
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.07 E-value=1.9e+02 Score=34.65 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=22.8
Q ss_pred hccchhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 63 ASKENSQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
+.....+...|...+++++.|+++++.....-
T Consensus 503 ~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 503 LSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777888888888888887766443
No 178
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.95 E-value=1.4e+02 Score=28.49 Aligned_cols=68 Identities=25% Similarity=0.412 Sum_probs=41.5
Q ss_pred hhhhhhhhHH-----HHHHhhhhhhhHhhHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHH
Q 039238 13 YSLRTQKMEL-----DRRLLEMQSTIDSLKDEQ-----KALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREA 82 (417)
Q Consensus 13 ~sLr~QKmEL-----~rkl~emqSTi~sLKdeQ-----K~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEA 82 (417)
-+||+|+|-| .++++-+|..+.-|.=.. ..+=..|.|..+.|--+. -|+--|+..|.
T Consensus 89 V~LRSq~mklp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLRsdivlL~-------------eLk~a~~~~E~ 155 (176)
T PF05499_consen 89 VHLRSQRMKLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELRSDIVLLY-------------ELKQALQNCEY 155 (176)
T ss_pred eEeeecccccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhHH
Confidence 4799999975 344555555544443221 122233444444443333 35667889999
Q ss_pred HHHHHHHhhhc
Q 039238 83 EIKDLRHQLEY 93 (417)
Q Consensus 83 EiEdlK~rle~ 93 (417)
|++-|+|+++-
T Consensus 156 El~~lr~r~ea 166 (176)
T PF05499_consen 156 ELQSLRHRYEA 166 (176)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 179
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.87 E-value=3.9e+02 Score=25.10 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=18.1
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
.++...+.+++..|..|+.+...|-..-++...+|..|+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 180
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.63 E-value=2.4e+02 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=35.7
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQIDA------SKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a------~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+.+..|......+++.+.+.+..+..++..... .........|+.-|.+.+.++.++..++
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRY 270 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHh
Confidence 334555555556666666666666666664320 0011123456666777788888888777
No 181
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.61 E-value=2.5e+02 Score=30.50 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=24.4
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+..|....+.|+..|..+-..++..|+..+..+...+...
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555566666666666666666666666666666554
No 182
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.41 E-value=3.2e+02 Score=25.73 Aligned_cols=73 Identities=22% Similarity=0.409 Sum_probs=41.3
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-----ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-----a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
-.+|.+.|.+++--+.-|..|.+.|.....-....|....-... ..+-..++-+|++-|.......-++..++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777777777776655554445544332221 11223455566666666555555444444
No 183
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.35 E-value=97 Score=34.85 Aligned_cols=72 Identities=26% Similarity=0.359 Sum_probs=45.0
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREA 82 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEA 82 (417)
|-++||+.-..|.|-+-.||..|-.+++|-|..+.-.+.+|-..+..+|.++.+ |+-.+.|.+-
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~----------------Lk~~ieqaq~ 142 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSA----------------LKGEIEQAQR 142 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH----------------HHhHHHHHHH
Confidence 346677777777777777777777777777776666665555555555555444 4444455555
Q ss_pred HHHHHHHh
Q 039238 83 EIKDLRHQ 90 (417)
Q Consensus 83 EiEdlK~r 90 (417)
.++||..+
T Consensus 143 ~~~El~~~ 150 (907)
T KOG2264|consen 143 QLEELRET 150 (907)
T ss_pred HHHHHHhh
Confidence 56666544
No 184
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.30 E-value=2.3e+02 Score=26.57 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 43 LESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 43 lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+|+-|+-++.+...+.+-..-.+..+++.+|..-|-+.+.|||.++.++.+
T Consensus 137 ~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333346678888888888899999988876543
No 185
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.97 E-value=3.3e+02 Score=32.99 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=37.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
++.++..|..+..+...++..+.+.+.-........+.+.+++.+++.++...++..
T Consensus 987 ~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777776666667777777766666666666666666666666655554433
No 186
>smart00150 SPEC Spectrin repeats.
Probab=32.70 E-value=2e+02 Score=21.13 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=40.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQID--ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+++..+-..++.+...+...+..|..+...+. ...+++....|..-|......-+.|...+
T Consensus 31 ~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 93 (101)
T smart00150 31 ESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELA 93 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888888888888888776 33345555566666555555555554443
No 187
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.22 E-value=1.6e+02 Score=25.04 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=37.5
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
...-|...+..++..+..+..+.+.++..+.+...+|+.+++-
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888899999999999999999999999999999998764
No 188
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.22 E-value=2.5e+02 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
|+..|...|.+...=++.+...+
T Consensus 80 q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 80 QLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 189
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.10 E-value=3.5e+02 Score=28.83 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
...|..+...-.+...+...+++.|.+|+.+...++.+|.+-+..+....
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~ 93 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333333444444444444444444444444444444444444333
No 190
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.09 E-value=1.2e+02 Score=27.10 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=35.8
Q ss_pred hhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 18 QKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 18 QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
=..+|+.++--++--|..|.+-++.++.-|++.+++|..|--.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888888888889999999999999999999999877544
No 191
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.00 E-value=1.3e+02 Score=24.52 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=8.9
Q ss_pred hhhhhhhhhhhhHHHHHHhh
Q 039238 9 KVKLYSLRTQKMELDRRLLE 28 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~e 28 (417)
..++..||.++-.+...|..
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444433
No 192
>PRK10698 phage shock protein PspA; Provisional
Probab=31.99 E-value=4.1e+02 Score=25.15 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=18.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALE 44 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lE 44 (417)
.++.-+-.+..+-..|+..+..|++.|..++..+..|=
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555555555554443
No 193
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.55 E-value=4e+02 Score=24.22 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 14 SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 14 sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.+..+...|...+.....++..|+..-..|+.-|.+.+++..++..+..
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666777777766666666655443
No 194
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=3e+02 Score=31.05 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhhccccccc
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLEYRVNVWS 99 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~s 99 (417)
..+..++..+++.|+|++.|+..|++-=+..+
T Consensus 594 ~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 594 LELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 46677777888889999999999987655444
No 195
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=31.07 E-value=3.8e+02 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
-..+.-|+-+|-..++-+...|.||.
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34667778888888888888888874
No 196
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.84 E-value=2.8e+02 Score=29.10 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=37.4
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKD----EQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKd----eQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
..++.+..+-.|++.....++..++.||+ +-+.+-.+|.|--++...|+|..-
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN 268 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLN 268 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666667777777788888888887 555677777777777777777653
No 197
>PTZ00464 SNF-7-like protein; Provisional
Probab=30.67 E-value=4.1e+02 Score=25.37 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=34.7
Q ss_pred hhhhhhHhhHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccchh------HHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 28 EMQSTIDSLKDEQKAL-----ESALEEKQNEIKMQREQIDASKENS------QLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 28 emqSTi~sLKdeQK~l-----EsAl~EKq~eI~~m~E~~~a~k~~~------Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
-|++...-||..++.| |..+.+-+..+-...|...+...+. .=..|.+-|...|+|++. . .
T Consensus 106 amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~------e--~ 177 (211)
T PTZ00464 106 AMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEK------E--A 177 (211)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhc------c--c
Confidence 3344444444444432 3344444444444445444333321 223444444455554431 1 1
Q ss_pred cccccCCCCCCccccccccc
Q 039238 97 VWSVSADDPSNPRKRINQNH 116 (417)
Q Consensus 97 ~~sVstddPSnp~~n~N~v~ 116 (417)
.+|...+.|+=|+-.++.+.
T Consensus 178 ~~~~l~~~~~~p~~~~~~~~ 197 (211)
T PTZ00464 178 DASYLADALAVPGTKLPDVP 197 (211)
T ss_pred cchhhhccccCCCCCCCCCC
Confidence 23344455555555444444
No 198
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.60 E-value=3.3e+02 Score=26.87 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=15.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 29 MQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 29 mqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
++.-++.+++....||..|.+...++.-++.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444443
No 199
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.44 E-value=2.8e+02 Score=30.41 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
..+++..|--|+-+-.+|+.++.+.+.-...-...-...+.+|.+.+.+|++.+-...
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3455566666666666776666666555555555555555556666655555554443
No 200
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.29 E-value=2.9e+02 Score=28.59 Aligned_cols=34 Identities=38% Similarity=0.426 Sum_probs=16.1
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALES 45 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEs 45 (417)
+..|+.|..+|...+...+..++.|....+.|++
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 201
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.15 E-value=1.8e+02 Score=26.24 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=34.7
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhh---hhHhhHHHHHHHHHHHH----HHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQS---TIDSLKDEQKALESALE----EKQNEIKMQRE 59 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqS---Ti~sLKdeQK~lEsAl~----EKq~eI~~m~E 59 (417)
.++++.+..+-+|.+|-.+....|..|+. -+..|+..-..|++.++ +-+.+|..|+=
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777776666 45555555555555555 45555555543
No 202
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.13 E-value=4.2e+02 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.095 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHH
Q 039238 67 NSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
++.+..|++-|.....+|+..+.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~ 225 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVK 225 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444444444444333
No 203
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.12 E-value=3.7e+02 Score=28.77 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+..|.....++..++.+.+..+..+..+.+.++..+++.+.+|..+.+..
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666666666666665555444
No 204
>PRK12704 phosphodiesterase; Provisional
Probab=29.85 E-value=4e+02 Score=28.46 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhhhhhh-hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 039238 2 KRKNEEMKVKLYSLRTQK-MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQR 80 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QK-mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqK 80 (417)
+...-+.++....++.+- .|+..+-.+++.-+.....+-+..|..|..++..|..-.+.. .+--.++......|.++
T Consensus 45 keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~L--ekke~eL~~re~~Le~r 122 (520)
T PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL--EKREEELEKKEKELEQK 122 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhh
Q 039238 81 EAEIKDLRHQLE 92 (417)
Q Consensus 81 EAEiEdlK~rle 92 (417)
++++++++..++
T Consensus 123 e~eLe~~~~~~~ 134 (520)
T PRK12704 123 QQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHHHHH
No 205
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.76 E-value=1.6e+02 Score=23.20 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.4
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQST 32 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqST 32 (417)
..+..+.+.+..|..++.++.-.+.+++..
T Consensus 12 ~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 12 QQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345667778888888888877777776543
No 206
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.73 E-value=3.1e+02 Score=22.42 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=50.9
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhh------hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQ------STIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEIL 77 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emq------STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~L 77 (417)
..+.+...+..|+.+-..|...+--|. -++..|..-.+.||.||. .|+..+.. .|..-.+.|
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~----~VR~rK~~--------~l~~~i~~l 80 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALK----RVRSRKDQ--------LLMEQIEEL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHH----HHHHHHHH--------HHHHHHHHH
Confidence 356677777778877777777655444 355666666666666664 44444433 344556778
Q ss_pred HHhHHHHHHHHHhhhc
Q 039238 78 KQREAEIKDLRHQLEY 93 (417)
Q Consensus 78 kqKEAEiEdlK~rle~ 93 (417)
+.|+.++.+....|..
T Consensus 81 ~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 81 KKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999888777643
No 207
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.50 E-value=4.4e+02 Score=23.99 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=43.1
Q ss_pred hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccc----------------------------
Q 039238 17 TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID--ASKE---------------------------- 66 (417)
Q Consensus 17 ~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~---------------------------- 66 (417)
-.--++...|..+...+....-.++.||.-+.+.+..+...+..+. ...|
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~ 109 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQ 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555556666666666666666666666666665555 1111
Q ss_pred -hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 67 -NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 67 -~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..+...|+..|.+.+..|.+++++.
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666655
No 208
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.40 E-value=2.4e+02 Score=31.57 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=25.0
Q ss_pred chhhhhhhhhhhhh-------hhhhHHHHH--------HhhhhhhhHhhHHHHHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLR-------TQKMELDRR--------LLEMQSTIDSLKDEQKALESALEEKQ 51 (417)
Q Consensus 3 RK~EEmkAK~~sLr-------~QKmEL~rk--------l~emqSTi~sLKdeQK~lEsAl~EKq 51 (417)
.++++++.||++|- .|..+++++ ..+.--.++-|-+.|..++.+=.|..
T Consensus 196 ~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 196 EQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777772 233333333 23333345556666665554444433
No 209
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=29.40 E-value=1e+02 Score=33.66 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccccccccCC
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSAD 103 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~sVstd 103 (417)
-.+.|+...+|-+|+|++|+..|+--...-+||+-
T Consensus 462 ~ki~l~~~ieki~~~l~~lqe~le~~~~eg~Vsvk 496 (543)
T COG1315 462 TKITLRNSIEKIKAELEGLQEELEVVGIEGSVSVK 496 (543)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhhhcccceEEEE
Confidence 45678999999999999999999888777777776
No 210
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.08 E-value=18 Score=38.77 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhHHHHHHH---HHHHhHHHHHHHHHhhhc
Q 039238 67 NSQLIVLKE---ILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 67 ~~Qm~aL~E---~LkqKEAEiEdlK~rle~ 93 (417)
.|++.+|++ =+.+.|++++-.|.+|++
T Consensus 297 rDElD~lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 297 RDELDELREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 244455555555555543
No 211
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.02 E-value=5e+02 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+...|.+-+++....|-+|.++|+.
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556666677777777778888754
No 212
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.88 E-value=4.7e+02 Score=27.93 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=9.2
Q ss_pred cccCcccc-ccccccc
Q 039238 217 EVKGDLQH-TITGEWE 231 (417)
Q Consensus 217 ~~Dgke~k-~~~G~~e 231 (417)
..||+-|. -|+.-++
T Consensus 268 i~dgrihp~riee~~~ 283 (514)
T TIGR03319 268 IQDGRIHPARIEEMVE 283 (514)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 46999888 3444333
No 213
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=28.85 E-value=3.5e+02 Score=24.42 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=30.1
Q ss_pred hccchhHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 039238 63 ASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNV 97 (417)
Q Consensus 63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~ 97 (417)
-.+++.+..|=++-+...|+.|.+|..+|..-..+
T Consensus 42 Dl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A~ii 76 (157)
T PRK01885 42 DRSENADYIYGKKRLREIDRRVRFLTKRLENLKVV 76 (157)
T ss_pred CcchhhcHHHHHHHHHHHHHHHHHHHHHHccCEEE
Confidence 34778888888999999999999999999877666
No 214
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.84 E-value=4.2e+02 Score=29.63 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=18.1
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHH
Q 039238 11 KLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEE 49 (417)
Q Consensus 11 K~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~E 49 (417)
=|..|-.++.++..+..+++.....+......||..+++
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 559 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK 559 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444444444444444433
No 215
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=28.84 E-value=5.3e+02 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
--++.+|-+.|.||..|.++|=...++
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888999999999999877754
No 216
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.54 E-value=3.6e+02 Score=31.76 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH-------HHHHHHHHHHHHHHHHHHHHhhhc-----------
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ-------KALESALEEKQNEIKMQREQIDAS----------- 64 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ-------K~lEsAl~EKq~eI~~m~E~~~a~----------- 64 (417)
|-+-+++..+.-+.+|-.+|.+++.++++-...|.++- |+-|-.|++-.+++--+....+|-
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34445555555666666666666665554444444444 433333444333333333222211
Q ss_pred -cchhHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 65 -KENSQLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 65 -k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
--...+..+.+-|+++-||+-.++..+++-+.
T Consensus 172 ~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 172 HDKNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11445667778888888888888888877665
No 217
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.47 E-value=47 Score=25.05 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=11.6
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALE 48 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~ 48 (417)
+...+..+++.++.|+.+...|+..++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 218
>PRK10698 phage shock protein PspA; Provisional
Probab=28.43 E-value=5.2e+02 Score=24.51 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=27.5
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
|+...|.++...++...-.+|.+|.-+.+.+..+.....++.
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~ 76 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAE 76 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666777777777777777777776666
No 219
>PRK01156 chromosome segregation protein; Provisional
Probab=28.32 E-value=5.2e+02 Score=28.38 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.0
Q ss_pred hhhHHHHHHhhcC
Q 039238 387 IQHLTFQLMQKNG 399 (417)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (417)
+++++.++++.-|
T Consensus 762 ~~~~~~e~~~~~~ 774 (895)
T PRK01156 762 MTSLTRKYLFEFN 774 (895)
T ss_pred HHHHHHHHHHHhC
Confidence 4444544544444
No 220
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.09 E-value=4.6e+02 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=30.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALE 44 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lE 44 (417)
.|+...++.++.++-+|-.++.+|-.-+.+|+.+-+++=
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdein 68 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEIN 68 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888888877665543
No 221
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=27.97 E-value=20 Score=38.54 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA---LEEKQNEIKMQREQIDASKENSQLIVLKEILKQ 79 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsA---l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~Lkq 79 (417)
.+++.|+..++-+-.++.+++-++..++..+..|+.+-.+|-+. .....-++-.+++++ .--+++++-.+.+|+
T Consensus 246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a---~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKA---DRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555554444322 222233444444443 224567777888999
Q ss_pred hHHHHHHHHHhh
Q 039238 80 REAEIKDLRHQL 91 (417)
Q Consensus 80 KEAEiEdlK~rl 91 (417)
|-.++.++|.++
T Consensus 323 KLed~~~lk~qv 334 (713)
T PF05622_consen 323 KLEDLEDLKRQV 334 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 222
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=27.47 E-value=1.3e+02 Score=24.95 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
||.+||............||.+|+.-+.-..-+++-..
T Consensus 1 rI~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~ 38 (90)
T PF14131_consen 1 RIQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRD 38 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999998887766666555443
No 223
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.22 E-value=3.9e+02 Score=28.45 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=67.3
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIK 85 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiE 85 (417)
..+...+..|..+-..+...+.+.+..-+.|..+.+.+...|.+-+.+...+.+...... .+=...++.|.+-...|-
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~--~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR--KDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888888888888888888777777663221 222344777888888888
Q ss_pred HHHHhhhcccccccc
Q 039238 86 DLRHQLEYRVNVWSV 100 (417)
Q Consensus 86 dlK~rle~P~~~~sV 100 (417)
++|++++. .|.|.|
T Consensus 425 ~ikR~lek-~nLPGl 438 (560)
T PF06160_consen 425 EIKRRLEK-SNLPGL 438 (560)
T ss_pred HHHHHHHH-cCCCCC
Confidence 88888853 344444
No 224
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.18 E-value=2.6e+02 Score=28.88 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=8.5
Q ss_pred ccccccCCCCCCccccc
Q 039238 96 NVWSVSADDPSNPRKRI 112 (417)
Q Consensus 96 ~~~sVstddPSnp~~n~ 112 (417)
-.+.|+++.+..-.+.+
T Consensus 182 v~v~l~~~~~g~~~l~l 198 (525)
T TIGR02231 182 VLVRLEAPEDAEAELNL 198 (525)
T ss_pred EEEEEeccCCceEEEEE
Confidence 34556665554444443
No 225
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=27.06 E-value=2.1e+02 Score=33.71 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHhh------hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 40 QKALESAL---EEKQNEIKMQREQID------ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 40 QK~lEsAl---~EKq~eI~~m~E~~~------a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
-|++|+.. +|...+|.||.|..- +..+.+-.+-|..-|--+|||++++|--+
T Consensus 1015 kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~ 1075 (1424)
T KOG4572|consen 1015 KKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGK 1075 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhh
Confidence 34455443 444567777777543 56666666777777777788887776543
No 226
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.04 E-value=2e+02 Score=33.64 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=51.9
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHh----------------hHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccchh
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDS----------------LKDEQKALESALEEKQNEIKMQREQID-------ASKENS 68 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~s----------------LKdeQK~lEsAl~EKq~eI~~m~E~~~-------a~k~~~ 68 (417)
|.-||+.|-+|+.++.+-+----| +..---++|--|.++++.|+.+|-.-. +.+ +
T Consensus 50 iqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ--~ 127 (1265)
T KOG0976|consen 50 IQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ--D 127 (1265)
T ss_pred HHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 445788888888877664321111 111223455555555555555553332 222 3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhccccccc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEYRVNVWS 99 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~s 99 (417)
-++++.+-|++-|-|||++..+++--..--|
T Consensus 128 ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 128 TIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4678889999999999999999875544333
No 227
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=26.89 E-value=3.6e+02 Score=29.95 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
|...+.++......|++.-+.+-..+.+--.+++++ -.+++.+.+.|..+. ..+.+..+|
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~L~~~~~~l~~~~-~e~~~r~kL 305 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTL---------QSDLESLEENLVEKK-KEKEERRKL 305 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333333444444444444444444444433334333 345666777777777 334444444
No 228
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=2.5e+02 Score=32.65 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=30.2
Q ss_pred hhhhhhhHHHHHHhhhhhhhHhhH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 14 SLRTQKMELDRRLLEMQSTIDSLK-------DEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 14 sLr~QKmEL~rkl~emqSTi~sLK-------deQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.|-.+-..++.-|.+|+.++.+|+ .+.+.|++++..+++++.+|.+...
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666665554 4555666777777777777777655
No 229
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.68 E-value=4.4e+02 Score=27.68 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
.++..++-++..-++|+.+.|.+
T Consensus 221 ~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 221 EQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566677777788888888844
No 230
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.66 E-value=2.6e+02 Score=20.51 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 32 TIDSLKDEQKALESALEEKQNEIKMQREQID--ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 32 Ti~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.+..+-..++.++..+...+.+|..+.+.+. ...+++....|++-+.......+.|....
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555777788888888888888887776 34446666667666666666655555544
No 231
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.49 E-value=2.4e+02 Score=26.83 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~ 55 (417)
++..++.|..+.++++.|...|+-||--+++.....+
T Consensus 22 ~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak 58 (191)
T PTZ00446 22 NDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAK 58 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999998877665543
No 232
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.42 E-value=3.1e+02 Score=26.72 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=43.3
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHhhHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 039238 13 YSLRTQKMELDRRLLEMQSTIDSLKDE----------------QKALESALEEKQNEIKMQREQIDASKENSQLIVLKEI 76 (417)
Q Consensus 13 ~sLr~QKmEL~rkl~emqSTi~sLKde----------------QK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~ 76 (417)
..|..|-.+++.+|.+.|..+...++. --.|++.+.+.+.++..|+... ....+++.+|+.-
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~--~~~~P~v~~l~~~ 250 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSIT--PEQNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCCchHHHHHH
Confidence 345555555555655555444444332 2345666666666666665433 3334577777766
Q ss_pred HHHhHHHHHHHHHhh
Q 039238 77 LKQREAEIKDLRHQL 91 (417)
Q Consensus 77 LkqKEAEiEdlK~rl 91 (417)
+...++.|.....++
T Consensus 251 i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 251 IKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666655554
No 233
>PRK02119 hypothetical protein; Provisional
Probab=26.35 E-value=2.9e+02 Score=22.31 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=7.0
Q ss_pred HHHHHHhhhhhhhHhhHH
Q 039238 21 ELDRRLLEMQSTIDSLKD 38 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKd 38 (417)
+|..+|.-.+-||+.|-+
T Consensus 13 ~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 234
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.24 E-value=2.9e+02 Score=22.24 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039238 40 QKALESALEEKQNEIKMQ 57 (417)
Q Consensus 40 QK~lEsAl~EKq~eI~~m 57 (417)
--.||.-++-.+.-|..|
T Consensus 10 i~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 10 LAELESRLAFQEITIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 235
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.07 E-value=3e+02 Score=29.17 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=46.9
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHH---------------HHHHHHhHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVL---------------KEILKQREAE 83 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL---------------~E~LkqKEAE 83 (417)
|..+.+.--|+.++.-|+.|---||..|.+..-+++.|.|.+. ...+-+++.|- ...|..+.|-
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~y 202 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAY 202 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Confidence 3344445566777777777777788888888888877777664 11122222221 3467778888
Q ss_pred HHHHHHhhhc
Q 039238 84 IKDLRHQLEY 93 (417)
Q Consensus 84 iEdlK~rle~ 93 (417)
|-.|.++.+|
T Consensus 203 I~~LEsKVqD 212 (401)
T PF06785_consen 203 IGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHH
Confidence 8777777666
No 236
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.02 E-value=4.3e+02 Score=31.40 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|+-+.+|++--++..-...+..++++-.+++-++-+--.++.-+.+.+|.|+..+..-
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~ 374 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEV 374 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555556666777777777777776677777777777666655443
No 237
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.98 E-value=1.4e+02 Score=29.54 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ 40 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ 40 (417)
+++++.+.+-....+-.+....|.+++..+..|+.+.
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 238
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.85 E-value=3e+02 Score=24.52 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
++..++++|-...-.++.-..++..--+-|++.+-.|.+-.+....+|+-++
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333333333333333333333333333333
No 239
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.76 E-value=4.3e+02 Score=28.93 Aligned_cols=93 Identities=28% Similarity=0.352 Sum_probs=59.2
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHHHHHHHH----H
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQ-STIDSLKDEQKALESALEEKQNEIKMQREQID-----ASKENSQLIVLKEI----L 77 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emq-STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-----a~k~~~Qm~aL~E~----L 77 (417)
|--|+--||-+|-+|...+.--| =-+.-|-+-++-||.--.-||+-+.|++-..- +.++ -+||--. .
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQE---qEalvN~LwKrm 210 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQE---QEALVNSLWKRM 210 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHH
Confidence 45566777777777776554333 45677777888888888888887777764432 3332 2333333 3
Q ss_pred HHhHHHHHHHHHhhhcccccccccCCCCCCccc
Q 039238 78 KQREAEIKDLRHQLEYRVNVWSVSADDPSNPRK 110 (417)
Q Consensus 78 kqKEAEiEdlK~rle~P~~~~sVstddPSnp~~ 110 (417)
++.|+|---|..+|+.||- +|+.|.-
T Consensus 211 dkLe~ekr~Lq~KlDqpvs-------~p~~prd 236 (552)
T KOG2129|consen 211 DKLEQEKRYLQKKLDQPVS-------TPSLPRD 236 (552)
T ss_pred HHHHHHHHHHHHHhcCccc-------CCCchhh
Confidence 5566666667777777777 5666654
No 240
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.74 E-value=3e+02 Score=27.90 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=18.3
Q ss_pred hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 17 TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 17 ~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
.-|.+|.-.+..+..-|..+..+-..||.|+.+|..-++-
T Consensus 258 ~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkv 297 (384)
T PF03148_consen 258 EAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKV 297 (384)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333444444444444444444444455555555554443
No 241
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.53 E-value=1.3e+02 Score=28.94 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=29.7
Q ss_pred HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 26 LLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 26 l~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+.+|+.-|+.|+.|--.|--.+++.+++|++|+++-
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 457788888888888888888889999999988876
No 242
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.48 E-value=3.2e+02 Score=25.86 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=31.4
Q ss_pred Ccchhhhhhhhhhhhhhh----hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 1 MKRKNEEMKVKLYSLRTQ----KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~Q----KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|+++.++-..+|-+|..| .-+..++-.+|.|.-+. .-..|+..|-++..++.+|+...
T Consensus 9 L~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~---q~~~Lq~qLlq~~k~~~~l~~eL 70 (206)
T PF14988_consen 9 LKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAK---QTSELQDQLLQKEKEQAKLQQEL 70 (206)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666554 33333444444444333 23456666777777777766544
No 243
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.42 E-value=1.4e+02 Score=24.37 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=20.7
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
-.|+-||..+-+.|.+|-+ |+...+|.+.+|..+++..
T Consensus 31 ~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i 68 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQI 68 (83)
T ss_pred HHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHH
Confidence 3445555555555555555 5555556666665555543
No 244
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.35 E-value=2.8e+02 Score=31.54 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=47.0
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
-|.||--..+|..-|--+||+--.|.+++|.++.. .+++|+.++-|+.-||+.||--.
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~---------kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINT---------KIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHhHHHHHHHHhHH
Confidence 37777788888888999999999999999987754 45788888888888888887544
No 245
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.31 E-value=4.2e+02 Score=29.09 Aligned_cols=66 Identities=30% Similarity=0.318 Sum_probs=40.2
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHH-------HHHHHHHHHHHhh--hccch-------hHHHHHHHHHHHhHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEE-------KQNEIKMQREQID--ASKEN-------SQLIVLKEILKQREAEI 84 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~E-------Kq~eI~~m~E~~~--a~k~~-------~Qm~aL~E~LkqKEAEi 84 (417)
++-..|.++|..-.||-|-||.||-|-+| |+.--+.|.|.-+ ..-++ -+++-||.-|..-|-||
T Consensus 246 km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888889999999999999887 3333344444443 11111 23455555555555555
Q ss_pred HH
Q 039238 85 KD 86 (417)
Q Consensus 85 Ed 86 (417)
|.
T Consensus 326 e~ 327 (575)
T KOG4403|consen 326 EA 327 (575)
T ss_pred Hh
Confidence 53
No 246
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.11 E-value=3e+02 Score=32.73 Aligned_cols=82 Identities=28% Similarity=0.499 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhhhhhhHHH---------------HHHhhhhhhhHhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 039238 4 KNEEMKVKLYSLRTQKMELD---------------RRLLEMQSTIDSLKDE--QKALESALEEKQNEIKMQREQIDASKE 66 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~---------------rkl~emqSTi~sLKde--QK~lEsAl~EKq~eI~~m~E~~~a~k~ 66 (417)
++..|..++-.|+..++++. .++-+++++|.+|-|. +-+|+++-.|+.+....|+.+..
T Consensus 793 eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~---- 868 (1200)
T KOG0964|consen 793 EINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAIL---- 868 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHH----
Confidence 46677778888888888744 3455666777766653 45556666666666666666652
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 67 NSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 67 ~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+...|-+....+.|++-+++--+
T Consensus 869 --el~~l~~~i~~~~a~~~~~~~~l 891 (1200)
T KOG0964|consen 869 --ELKTLQDSIDKKKAEIKEIKKEL 891 (1200)
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33355566666777776666544
No 247
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.10 E-value=6.3e+02 Score=25.30 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhhccc--ccccccCCCCCCc
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLEYRV--NVWSVSADDPSNP 108 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle~P~--~~~sVstddPSnp 108 (417)
..+..|.+.+.+..||++.|....++|- .|..|.-.-|--+
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCT 242 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCT 242 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCC
Confidence 3455667777778888888888887773 4555555555433
No 248
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.85 E-value=6.5e+02 Score=25.93 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
++..|++-|+..|+++.+|...+.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655543
No 249
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=3.5e+02 Score=28.50 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH-HHHHHHhhhcccccccccCCCCCCccc
Q 039238 47 LEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE-IKDLRHQLEYRVNVWSVSADDPSNPRK 110 (417)
Q Consensus 47 l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE-iEdlK~rle~P~~~~sVstddPSnp~~ 110 (417)
|.+=.++|..|.|+. .+.-..+.+=-++|+.|.+| +|+++. ++++-.+-.+-+.+|-.-++
T Consensus 244 L~~G~~kL~~~~etL--Eqq~~~L~~niDIL~~k~~eal~~~~n-~~~~~~D~~~~~~~~l~kq~ 305 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETL--EQQLQSLQKNIDILKSKVREALEKAEN-LEALDIDEAIECTAPLYKQI 305 (365)
T ss_pred HHhhHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHhhhcc-CcCCCchhhhhccchHHHHH
Confidence 344445555555544 12222233334789999888 888888 77776666666665544444
No 250
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.75 E-value=4.1e+02 Score=28.28 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=47.9
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 27 LEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 27 ~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.+=+.++..+-.---.||+.|.+.+.++.+|+... . ...+|+..|+.-+.-.|++|.+.+.++
T Consensus 275 lDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~-~-p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 275 IDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNG-L-DQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555678899999999999987754 2 334699999999999999999999998
No 251
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.35 E-value=7e+02 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
-..|.....++...+..|.++...|+..+.+.+.++..+++
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444433
No 252
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.24 E-value=2.1e+02 Score=22.82 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL 43 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l 43 (417)
++|++.++..|.+.-.-+++.+.++..++..|++.=|.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444444444444444444444433443
No 253
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.19 E-value=5.2e+02 Score=23.10 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=32.2
Q ss_pred hhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 15 LRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 15 Lr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
|-..+|++.++|..|+..+..+|-.|.+|=.--++..+-++.+++...
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~ 54 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA 54 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556788999999999999999998888886666666666666666553
No 254
>PRK04325 hypothetical protein; Provisional
Probab=24.09 E-value=3.3e+02 Score=22.02 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=15.7
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQ 57 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m 57 (417)
++|..+|.-.+-||+.|-+.--.-...+...+.+++.|
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333333333344444
No 255
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.02 E-value=5.5e+02 Score=26.73 Aligned_cols=87 Identities=29% Similarity=0.337 Sum_probs=56.8
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTID--------------SLKDEQKALESALEEKQNEIKMQREQIDASKENSQ 69 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~--------------sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Q 69 (417)
|++|++ ++-.|.+|-++--+.|-||=|--- -|-...|-|-+|..+-+.++.+.+...- --...
T Consensus 58 k~~e~r-~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Ln--nvasd 134 (338)
T KOG3647|consen 58 KIEELR-KARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLN--NVASD 134 (338)
T ss_pred HHHHHH-HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence 556654 445566666666666666544211 2344567777777777777766655443 11346
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 70 LIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
-++|-+-++.+.+|+|-+..||+.
T Consensus 135 ea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 135 EAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999988864
No 256
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.99 E-value=2.6e+02 Score=25.97 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 34 DSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 34 ~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
..+.+....||.-++.-..+|..|++.. .--..-.+.-.+|||+ .||||+..+|+
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l---~~kad~vvsYqll~hr-~e~ee~~~~l~ 135 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQL---QQKADDVVSYQLLQHR-REMEEMLERLQ 135 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHhH-HHHHHHHHHHH
No 257
>COG5293 Predicted ATPase [General function prediction only]
Probab=23.67 E-value=3.1e+02 Score=30.25 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=45.8
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hccc---hhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 30 QSTIDSLKDEQKALESALEEKQNEIKMQREQID----ASKE---NSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 30 qSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~----a~k~---~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
++-=++|+++-+.++++|.+..++|.-+-+.-. ..+. -.....|+|..-.+++||-+|.-|.++
T Consensus 334 e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~ 404 (591)
T COG5293 334 EERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEP 404 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhH
Confidence 345689999999999999999999987765543 1111 234556777777888888777766543
No 258
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.66 E-value=3.3e+02 Score=20.62 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=12.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSL 36 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sL 36 (417)
++|+.++..|..+...|...+..|+..+.+|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333
No 259
>PF14282 FlxA: FlxA-like protein
Probab=23.58 E-value=2.7e+02 Score=23.58 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=5.3
Q ss_pred hhhhhhhHHHHHHh
Q 039238 14 SLRTQKMELDRRLL 27 (417)
Q Consensus 14 sLr~QKmEL~rkl~ 27 (417)
.|..|...|...|.
T Consensus 23 ~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 260
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.45 E-value=4.5e+02 Score=31.31 Aligned_cols=90 Identities=24% Similarity=0.348 Sum_probs=48.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhh--------------------hhh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQ--------------------STI-DSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emq--------------------STi-~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.+-+|..|+..||-++.|=+.||+|++ +-+ --|++.-++.+-|.+-|...-..|-+...
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777766666666665543 222 23555566666666666555544544332
Q ss_pred ------hccc---------hhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 63 ------ASKE---------NSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 63 ------a~k~---------~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
..++ --...+|+|-+-..|-++|=||.-.+.
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 223345566666666666666665543
No 261
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.32 E-value=3.1e+02 Score=24.11 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=29.9
Q ss_pred hhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 14 SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 14 sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.|-..+..|.+.|.-....++-|+.+-..+|++|+-=...|.+|+.+.
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~ 71 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNA 71 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666555
No 262
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=23.29 E-value=5.2e+02 Score=25.66 Aligned_cols=15 Identities=27% Similarity=0.056 Sum_probs=8.7
Q ss_pred hhhhhhhhhhhhhHH
Q 039238 8 MKVKLYSLRTQKMEL 22 (417)
Q Consensus 8 mkAK~~sLr~QKmEL 22 (417)
++-...|||+++++-
T Consensus 112 l~km~EslRi~~~~e 126 (225)
T KOG4848|consen 112 LKKMRESLRILYTKE 126 (225)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445556677766543
No 263
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.24 E-value=2.7e+02 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=14.9
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 28 EMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 28 emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
||++.|+.|--+-|.+|....-...+|+||+-
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555555543
No 264
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.16 E-value=5e+02 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 039238 70 LIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rl 91 (417)
..+.+++=.+.-||+.||+-++
T Consensus 264 L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 264 LQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666555
No 265
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.12 E-value=5.4e+02 Score=27.46 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHhHHHH
Q 039238 66 ENSQLIVLKEILKQREAEI 84 (417)
Q Consensus 66 ~~~Qm~aL~E~LkqKEAEi 84 (417)
+-++-.|=..+|++.+.++
T Consensus 143 ~lt~~eak~~l~~~~~~~~ 161 (514)
T TIGR03319 143 GLTQEEAKEILLEEVEEEA 161 (514)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3334444445555555443
No 266
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=23.06 E-value=99 Score=27.13 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
.|...|.++|++|.++|+.|...++
T Consensus 146 ~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 146 RQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3557788888888888888877664
No 267
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=23.04 E-value=3e+02 Score=28.96 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=47.9
Q ss_pred hhhhhhhhhhhhh--------hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 7 EMKVKLYSLRTQK--------MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 7 EmkAK~~sLr~QK--------mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
++++.|.+.|..- -+|+-++.+|-..|--|--+-=.||.-++-+.+.|+.|.++..
T Consensus 212 akk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqr 275 (361)
T KOG3634|consen 212 AKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQR 275 (361)
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHH
Confidence 7788887777542 5799999999999999999999999999999999999988775
No 268
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.93 E-value=5.2e+02 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=14.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhh
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTI 33 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi 33 (417)
.|+|+..+.++..|-..+...+..+.+-+
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~ 852 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSEL 852 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555544444444433333
No 269
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.93 E-value=5.7e+02 Score=29.12 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=17.3
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
+++|..+|.++..-+..++-+-..|=.+|.++.+-|--+.
T Consensus 87 ~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~ 126 (769)
T PF05911_consen 87 KSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELS 126 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333
No 270
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.90 E-value=5.5e+02 Score=22.91 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=15.3
Q ss_pred hHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH
Q 039238 20 MELDRRLLEMQSTIDSLKDEQKALESALEEKQ 51 (417)
Q Consensus 20 mEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq 51 (417)
..|..++..++.-++.|...-+.+..++++..
T Consensus 38 ~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 38 TSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444455555544444444444443
No 271
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.86 E-value=1.8e+02 Score=23.96 Aligned_cols=40 Identities=28% Similarity=0.456 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
...|..++..+++.+..|....+.++..+.+.+.+|+.|+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888888888888888888877764
No 272
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=22.83 E-value=5.8e+02 Score=24.22 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccccccccCC
Q 039238 24 RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSAD 103 (417)
Q Consensus 24 rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~sVstd 103 (417)
..+.++-+-+.-|+.+-|.|++.++.--+.++-..... +|...+ +++-.+.++++||-.++---+.--+.+|
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~------~qes~~--~veel~eqV~el~~i~emv~~d~~~l~g 143 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT------PQESRG--IVEELEEQVNELKMIVEMVIKDLRELYG 143 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh------HHHHHH--HHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 34455666677777888888888888888887766554 455555 6777777788888777776666666777
Q ss_pred CC
Q 039238 104 DP 105 (417)
Q Consensus 104 dP 105 (417)
+|
T Consensus 144 ~~ 145 (157)
T COG3352 144 VP 145 (157)
T ss_pred CC
Confidence 76
No 273
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.69 E-value=5e+02 Score=26.33 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=37.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccc-------hhHHHHHHHHHHHhHHHHHHHHHhh-hcccccccc
Q 039238 30 QSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKE-------NSQLIVLKEILKQREAEIKDLRHQL-EYRVNVWSV 100 (417)
Q Consensus 30 qSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~-------~~Qm~aL~E~LkqKEAEiEdlK~rl-e~P~~~~sV 100 (417)
.-.++++..+.+.+++-......++..++.+.. ..+- --+..+.+.++.+-=.-.+++...- ..+.+++=|
T Consensus 334 ~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~rvI 413 (458)
T COG3206 334 RQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQEASPIGNARVI 413 (458)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCceeEe
Confidence 344455555555555555555555555555443 1111 1234445555555555555555544 455566556
Q ss_pred cCCC
Q 039238 101 SADD 104 (417)
Q Consensus 101 stdd 104 (417)
|...
T Consensus 414 s~A~ 417 (458)
T COG3206 414 SPAV 417 (458)
T ss_pred cccc
Confidence 5554
No 274
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=22.47 E-value=6e+02 Score=23.89 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hccchhHHHHHHHHHHHhHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID---ASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~---a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
+.+.|.++.--.+-|......+|-...+.+.+.+...-+.. --.-....-..+..|+|-|.|.|||
T Consensus 78 vRrqi~eL~lq~~~i~ekR~~l~ke~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~EEi 146 (147)
T PF02090_consen 78 VRRQIQELNLQEQQIQEKRRQLEKEKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQEEI 146 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45566666666667777777777777776666665544442 1111223445677899999999987
No 275
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.33 E-value=7.1e+02 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhh
Q 039238 71 IVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 71 ~aL~E~LkqKEAEiEdlK~rle 92 (417)
.+++..|+++...++-+..+|.
T Consensus 368 ~a~~~~L~~~~~rL~~l~~rL~ 389 (438)
T PRK00286 368 RAMRRQLKRKRQRLEALAQQLE 389 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999985
No 276
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.20 E-value=4.4e+02 Score=21.52 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhH-------HHHHHHHHHHhHHHHHHH
Q 039238 33 IDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQ-------LIVLKEILKQREAEIKDL 87 (417)
Q Consensus 33 i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Q-------m~aL~E~LkqKEAEiEdl 87 (417)
...++...++|..+|.+.+-.|.-|++... +.+.|.. +..=+..+...+.+|..+
T Consensus 34 ~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 34 SEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777777777777777777665 4444433 333344444444444444
No 277
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=22.08 E-value=30 Score=38.54 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQ 51 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq 51 (417)
+.+...-|.++..+|.+.|-+.++.+..|...-..|++.|++-+
T Consensus 206 l~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 206 LTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELK 249 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444445555556666666666666666655555665555544
No 278
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.00 E-value=2.7e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 24 RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 24 rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
..+.=++.-+..|+...+.|+..+..++.+|+++++..
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 87 EAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555566666666666666655543
No 279
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.00 E-value=5e+02 Score=30.19 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde 39 (417)
++.+...|..+.....++...+....+.+..++.+
T Consensus 609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKRE 643 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 280
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.91 E-value=4.8e+02 Score=21.85 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=16.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde 39 (417)
+.++..+..|..|...|...+.+.+.+++.|+.-
T Consensus 9 ~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 9 QVLQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544444443
No 281
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.81 E-value=3.1e+02 Score=32.42 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=51.4
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH------HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL------ESALEEKQNEIKMQREQIDASKENSQLIVLKEI 76 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l------EsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~ 76 (417)
|++.||...|..|.-+..+|...+..++..+..|..+...+ -.|+.+...--... ..-..+.+...+-
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~------~~a~~~l~~a~~~ 815 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQA------ESAERELARAARK 815 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777665432 22222222111111 1112344455555
Q ss_pred HHHhHHHHHHHHHhhhcccccccccCC
Q 039238 77 LKQREAEIKDLRHQLEYRVNVWSVSAD 103 (417)
Q Consensus 77 LkqKEAEiEdlK~rle~P~~~~sVstd 103 (417)
|.+..+.+...+..+..-+..+.+.++
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~ 842 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTD 842 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 555555555555555544444444444
No 282
>PLN02320 seryl-tRNA synthetase
Probab=21.75 E-value=4.9e+02 Score=28.13 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccccc
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQN--EIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVW 98 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~--eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~ 98 (417)
+|..+...++.-++.|+.+++.+=..+..+.. ++..+.+.....+ .++.+|.+.|+..+++|.++=.++ |=..
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk--~~i~~le~~~~~~~~~l~~~~l~i--PN~~- 171 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLK--EGLVTLEEDLVKLTDELQLEAQSI--PNMT- 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhC--CCCC-
Q ss_pred cccCCCCCCc
Q 039238 99 SVSADDPSNP 108 (417)
Q Consensus 99 sVstddPSnp 108 (417)
||+-|
T Consensus 172 -----h~~VP 176 (502)
T PLN02320 172 -----HPDVP 176 (502)
T ss_pred -----CccCC
No 283
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=21.36 E-value=4.3e+02 Score=28.86 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHh
Q 039238 11 KLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQ 90 (417)
Q Consensus 11 K~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~r 90 (417)
-||.||.=|||+ |+++|=.-|+..+..+|-.|.--+-+.-+.-..|+. |+..|.+.|+..-+.++-+.--
T Consensus 401 AI~~fR~Vk~~q-Rkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~---------qI~~Le~kl~~l~~~l~s~~~~ 470 (489)
T KOG3684|consen 401 AIHQFRSVKWEQ-RKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEK---------QIDTLESKLEALTASLSSLPGL 470 (489)
T ss_pred HHHHHHHHHHHH-HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhCchh
Confidence 488999999996 788888888888888888887666555444444433 6677777777777777777776
Q ss_pred hhcccc
Q 039238 91 LEYRVN 96 (417)
Q Consensus 91 le~P~~ 96 (417)
+..|+.
T Consensus 471 ~~~~~~ 476 (489)
T KOG3684|consen 471 LAQPLR 476 (489)
T ss_pred hcCccc
Confidence 666654
No 284
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.27 E-value=88 Score=29.21 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 49 EKQNEIKMQREQID-ASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 49 EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..+..+||-=|++- ...+-++-+.|++.+|...-|+-|||.=+
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333 33334677788999999999999998766
No 285
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.69 E-value=5.5e+02 Score=23.19 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 32 TIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 32 Ti~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
|-..|-+..-.+.+++.|..++|..++... ++.|+.-..+..+|++.|+.+|.+
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~--------~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSE--------FAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
No 286
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=20.54 E-value=5.5e+02 Score=31.14 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=65.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHH----HHHHHHHhh------------------
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNE----IKMQREQID------------------ 62 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~e----I~~m~E~~~------------------ 62 (417)
..-++-.|..|+..+.-++.++.++++-+.+|+++--...+++++..++ +.+.++.-.
T Consensus 880 ~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~ 959 (1294)
T KOG0962|consen 880 LQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNEC 959 (1294)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456667888999999999999999999999999988888888877776 222222211
Q ss_pred ------hccchhHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 63 ------ASKENSQLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 63 ------a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
..-+.+|+-.+.+.|..+--++..++..|.+-..
T Consensus 960 ~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~ 999 (1294)
T KOG0962|consen 960 FEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQ 999 (1294)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2223567777777777777777777766644443
No 287
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.28 E-value=4.1e+02 Score=27.43 Aligned_cols=67 Identities=30% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+|......++..++.|+.+++.+-.++......-...++.. .++..|++-|+..|+++.+|...+..
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~------~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALI------AEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 288
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.27 E-value=7.8e+02 Score=28.10 Aligned_cols=84 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHHHHHHH---
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-----ASKENSQLIVLKE--- 75 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-----a~k~~~Qm~aL~E--- 75 (417)
.+++|.+.+..|+ +||+...+-|.+|-.+|-+-+-.|-+.-+|.+.++-...+.-- |.++.|--+||.|
T Consensus 665 qleeL~~~l~k~~---~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqeal~aAisekda~iAllE~~~ 741 (775)
T PF10174_consen 665 QLEELEAALEKLR---QELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEMKQEALLAAISEKDANIALLELSS 741 (775)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHH
Q ss_pred -HHHHhHHHHHHHHHh
Q 039238 76 -ILKQREAEIKDLRHQ 90 (417)
Q Consensus 76 -~LkqKEAEiEdlK~r 90 (417)
.=+.---++..|++.
T Consensus 742 ~~~~~~q~e~~~l~re 757 (775)
T PF10174_consen 742 SKKKKTQEEVMALRRE 757 (775)
T ss_pred HHHHHhHHHHHHHHHH
No 289
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.26 E-value=2e+02 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=33.0
Q ss_pred hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 17 TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 17 ~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
++|.||+.||..||.-..++++.++.|-.-..-.+..+++-+.+..
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777777767777777777666654
No 290
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.10 E-value=4.3e+02 Score=28.96 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQS 31 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqS 31 (417)
++|+..+..|+.+.+++...+..+++
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~ 356 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKS 356 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333
No 291
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.07 E-value=5.4e+02 Score=27.08 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=59.5
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+..|+.+-..+..++...+..+..|+..++.++..++..+..|..+++..-..-+-.++.+-...|...|.=.+.+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~ 235 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNAL 235 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45677777788888888888888888888888888888888888888776433334456666666777776666666654
Q ss_pred h
Q 039238 92 E 92 (417)
Q Consensus 92 e 92 (417)
+
T Consensus 236 ~ 236 (563)
T TIGR00634 236 A 236 (563)
T ss_pred H
Confidence 3
No 292
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.00 E-value=84 Score=26.75 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=9.0
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALE 44 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lE 44 (417)
|.+.+.+++..++.|+.+...|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333433333333
Done!