Query 039238
Match_columns 417
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 12:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 92.2 1.3 4.3E-05 40.2 11.0 64 4-67 26-89 (256)
2 1c1g_A Tropomyosin; contractIl 91.7 1.7 5.8E-05 35.5 10.3 20 9-28 12-31 (284)
3 1c1g_A Tropomyosin; contractIl 89.3 2.7 9.4E-05 34.3 9.5 41 9-49 5-45 (284)
4 3mq7_A Bone marrow stromal ant 86.7 6 0.00021 34.3 10.3 86 6-97 21-108 (121)
5 3o0z_A RHO-associated protein 86.3 6.2 0.00021 35.6 10.6 58 4-61 49-113 (168)
6 1l8d_A DNA double-strand break 85.8 6.6 0.00023 31.0 9.5 43 1-43 1-43 (112)
7 3tnu_B Keratin, type II cytosk 83.9 7.7 0.00026 32.2 9.5 42 14-55 33-74 (129)
8 3tnu_A Keratin, type I cytoske 83.4 7.3 0.00025 32.4 9.2 44 13-56 34-77 (131)
9 3tnu_A Keratin, type I cytoske 80.5 10 0.00034 31.6 9.0 56 2-60 44-99 (131)
10 3tnu_B Keratin, type II cytosk 78.8 11 0.00039 31.1 8.8 30 2-31 42-71 (129)
11 3nmd_A CGMP dependent protein 78.1 6.1 0.00021 31.6 6.5 43 41-92 22-64 (72)
12 3mq9_A Bone marrow stromal ant 78.0 5 0.00017 38.0 7.2 69 1-88 402-470 (471)
13 3na7_A HP0958; flagellar bioge 77.9 18 0.00062 32.6 10.5 45 12-56 99-143 (256)
14 3u1c_A Tropomyosin alpha-1 cha 77.9 26 0.00089 28.3 10.4 87 6-92 5-96 (101)
15 3u59_A Tropomyosin beta chain; 77.5 26 0.00088 28.0 10.4 88 5-92 4-96 (101)
16 1m1j_B Fibrinogen beta chain; 76.1 16 0.00056 37.0 10.6 82 4-89 101-189 (464)
17 3iv1_A Tumor susceptibility ge 75.3 20 0.00068 28.9 8.9 60 22-87 16-75 (78)
18 1x8y_A Lamin A/C; structural p 70.1 27 0.00093 27.5 8.5 78 10-92 3-80 (86)
19 2fxo_A Myosin heavy chain, car 68.7 48 0.0016 27.5 10.1 78 7-93 38-122 (129)
20 2v71_A Nuclear distribution pr 68.0 9.5 0.00032 34.8 6.2 85 8-92 93-178 (189)
21 3oja_B Anopheles plasmodium-re 67.7 18 0.00061 34.9 8.3 40 22-61 454-493 (597)
22 3efg_A Protein SLYX homolog; x 66.4 14 0.00046 29.2 6.0 47 15-61 5-51 (78)
23 3oja_B Anopheles plasmodium-re 66.0 44 0.0015 32.2 10.6 22 70-91 560-581 (597)
24 3a7o_A Autophagy protein 16; c 65.1 9.7 0.00033 30.8 5.0 50 34-83 14-71 (75)
25 1i84_S Smooth muscle myosin he 63.8 18 0.00062 39.2 8.4 12 79-90 924-935 (1184)
26 3hnw_A Uncharacterized protein 63.5 39 0.0013 28.9 8.8 17 71-87 120-136 (138)
27 3qh9_A Liprin-beta-2; coiled-c 61.7 48 0.0017 27.1 8.5 55 35-91 23-77 (81)
28 1lwu_C Fibrinogen gamma chain; 60.7 16 0.00056 35.3 6.6 52 10-61 5-56 (323)
29 2c5k_T Syntaxin TLG1, T-snare 58.7 40 0.0014 27.2 7.6 58 37-94 35-94 (95)
30 3oja_A Leucine-rich immune mol 57.5 31 0.001 32.8 7.8 49 6-54 370-430 (487)
31 3hnw_A Uncharacterized protein 56.6 17 0.0006 31.1 5.5 49 5-53 84-132 (138)
32 1m1j_B Fibrinogen beta chain; 56.5 47 0.0016 33.7 9.3 13 80-92 173-185 (464)
33 3mov_A Lamin-B1; LMNB1, B-type 56.3 68 0.0023 26.0 8.6 78 9-91 11-88 (95)
34 1l8d_A DNA double-strand break 55.1 31 0.0011 27.1 6.3 24 69-92 79-102 (112)
35 3o0z_A RHO-associated protein 51.8 1.2E+02 0.0041 27.3 10.2 53 3-55 13-79 (168)
36 2eqb_B RAB guanine nucleotide 51.8 43 0.0015 27.9 6.8 62 33-96 7-68 (97)
37 4etp_A Kinesin-like protein KA 49.2 33 0.0011 33.4 6.7 12 81-92 51-62 (403)
38 3t97_C Nuclear pore glycoprote 48.0 6.8 0.00023 30.3 1.4 48 9-56 11-58 (64)
39 3bas_A Myosin heavy chain, str 46.8 1E+02 0.0036 24.2 9.3 70 22-93 19-88 (89)
40 2lw1_A ABC transporter ATP-bin 45.4 1.1E+02 0.0036 23.9 8.3 51 41-91 25-79 (89)
41 2yy0_A C-MYC-binding protein; 44.7 6.7 0.00023 29.1 0.9 23 15-37 24-46 (53)
42 1ic2_A Tropomyosin alpha chain 44.5 1.1E+02 0.0036 23.6 9.6 53 6-58 2-54 (81)
43 3oja_A Leucine-rich immune mol 44.3 1E+02 0.0035 29.2 9.1 40 22-61 412-451 (487)
44 1gk4_A Vimentin; intermediate 44.2 1.1E+02 0.0038 23.8 9.2 78 10-92 1-78 (84)
45 1ci6_A Transcription factor AT 43.2 18 0.00063 27.1 3.1 34 26-59 25-58 (63)
46 2v66_B Nuclear distribution pr 43.2 59 0.002 27.5 6.5 59 4-62 4-66 (111)
47 1jnm_A Proto-oncogene C-JUN; B 42.5 13 0.00046 27.4 2.2 30 7-36 26-55 (62)
48 2ocy_A RAB guanine nucleotide 40.9 1E+02 0.0034 27.4 7.9 59 36-96 42-100 (154)
49 2oto_A M protein; helical coil 40.5 1.7E+02 0.0056 24.7 9.3 40 5-44 38-77 (155)
50 2w6b_A RHO guanine nucleotide 40.2 63 0.0022 24.9 5.6 39 10-48 10-48 (56)
51 3u06_A Protein claret segregat 40.2 48 0.0016 32.5 6.3 58 1-58 1-58 (412)
52 1t2k_D Cyclic-AMP-dependent tr 40.1 22 0.00077 26.1 3.1 36 25-60 23-58 (61)
53 2no2_A HIP-I, huntingtin-inter 40.1 1.6E+02 0.0053 24.3 9.4 35 3-37 8-42 (107)
54 2i1j_A Moesin; FERM, coiled-co 39.2 25 0.00085 35.8 4.3 78 10-93 321-398 (575)
55 2xdj_A Uncharacterized protein 38.2 1E+02 0.0035 24.5 6.9 39 24-62 20-58 (83)
56 3ol1_A Vimentin; structural ge 38.1 1.7E+02 0.0057 24.1 9.6 86 5-91 22-117 (119)
57 2zqm_A Prefoldin beta subunit 36.2 76 0.0026 24.7 5.8 30 3-32 20-49 (117)
58 3htk_A Structural maintenance 36.1 1.2E+02 0.004 21.7 8.0 38 24-61 5-42 (60)
59 2v66_B Nuclear distribution pr 35.8 2E+02 0.0068 24.3 9.7 54 8-61 40-93 (111)
60 3bas_A Myosin heavy chain, str 35.0 97 0.0033 24.4 6.2 31 26-56 37-67 (89)
61 1x79_B RAB GTPase binding effe 34.3 1.9E+02 0.0065 24.5 8.2 24 68-91 45-68 (112)
62 3vkg_A Dynein heavy chain, cyt 32.6 1.6E+02 0.0054 36.4 10.1 26 30-55 1933-1958(3245)
63 2e7s_A RAB guanine nucleotide 32.2 73 0.0025 27.9 5.5 58 37-96 31-88 (135)
64 3v1a_A Computational design, M 32.0 1.1E+02 0.0038 22.7 5.7 40 47-86 6-45 (48)
65 3iv1_A Tumor susceptibility ge 31.4 94 0.0032 25.0 5.6 48 3-50 18-65 (78)
66 2zqm_A Prefoldin beta subunit 30.9 1.9E+02 0.0064 22.4 9.8 27 69-95 85-111 (117)
67 1s35_A Beta-I spectrin, spectr 30.7 2.2E+02 0.0076 23.3 8.1 57 31-87 140-198 (214)
68 1t2k_D Cyclic-AMP-dependent tr 30.7 1.3E+02 0.0043 22.0 5.9 33 5-37 24-56 (61)
69 3i00_A HIP-I, huntingtin-inter 30.6 2.3E+02 0.008 23.9 8.2 46 5-53 17-62 (120)
70 1lwu_C Fibrinogen gamma chain; 30.3 1.5E+02 0.0052 28.6 7.9 57 30-95 4-60 (323)
71 2eqb_B RAB guanine nucleotide 30.3 2.4E+02 0.0081 23.5 9.8 83 4-86 6-94 (97)
72 4dk0_A Putative MACA; alpha-ha 29.8 1.2E+02 0.0042 27.2 6.8 26 69-94 130-155 (369)
73 3gp4_A Transcriptional regulat 29.4 1.1E+02 0.0038 25.4 6.1 22 40-61 83-104 (142)
74 4dnd_A Syntaxin-10, SYN10; str 29.4 2.6E+02 0.0088 23.6 9.9 56 36-91 65-128 (130)
75 2wt7_A Proto-oncogene protein 29.4 52 0.0018 24.4 3.6 36 25-60 24-59 (63)
76 1fxk_A Prefoldin; archaeal pro 29.0 79 0.0027 24.3 4.8 30 3-32 15-44 (107)
77 1j1d_B Troponin T, TNT; THIN f 28.9 1.3E+02 0.0044 25.1 6.3 41 21-61 46-86 (106)
78 2pih_A Protein YMCA; regulate 28.8 1.9E+02 0.0064 24.5 7.4 55 47-104 68-123 (151)
79 2v71_A Nuclear distribution pr 28.7 3.3E+02 0.011 24.7 10.5 53 8-60 61-117 (189)
80 4f6r_C Stathmin-like domain R1 28.7 80 0.0027 26.0 4.9 43 34-81 42-84 (87)
81 1m1j_C Fibrinogen gamma chain; 28.5 2.6E+02 0.0089 27.8 9.4 26 36-61 89-114 (409)
82 1cun_A Protein (alpha spectrin 28.0 2.5E+02 0.0084 22.9 7.9 32 31-62 139-170 (213)
83 4etp_A Kinesin-like protein KA 27.8 1.1E+02 0.0036 29.9 6.4 57 4-60 4-60 (403)
84 3lbx_A Spectrin alpha chain, e 27.4 2.3E+02 0.0079 23.4 7.7 57 31-87 88-146 (161)
85 1ic2_A Tropomyosin alpha chain 27.3 1.7E+02 0.0057 22.5 6.3 23 69-91 42-64 (81)
86 3swy_A Cyclic nucleotide-gated 27.3 1.4E+02 0.0048 21.9 5.5 36 21-56 2-37 (46)
87 1a93_B MAX protein, coiled coi 27.2 23 0.00077 25.0 1.2 26 1-26 5-30 (34)
88 2lw1_A ABC transporter ATP-bin 26.9 1.7E+02 0.0058 22.7 6.4 26 23-48 21-46 (89)
89 1ik9_A DNA repair protein XRCC 26.5 1.7E+02 0.006 26.5 7.2 40 7-46 136-175 (213)
90 3he5_B Synzip2; heterodimeric 26.1 82 0.0028 23.6 4.1 43 5-47 5-47 (52)
91 1fxk_C Protein (prefoldin); ar 25.8 2.5E+02 0.0087 22.5 7.4 81 5-87 10-128 (133)
92 4i0x_B ESAT-6-like protein MAB 25.7 2.3E+02 0.0077 21.7 7.6 68 25-92 12-84 (103)
93 1fxk_A Prefoldin; archaeal pro 25.4 2.3E+02 0.0078 21.7 10.2 25 68-92 79-103 (107)
94 3a7p_A Autophagy protein 16; c 25.4 3.6E+02 0.012 24.0 9.4 65 25-91 69-133 (152)
95 1ci6_A Transcription factor AT 25.0 1.7E+02 0.0057 21.8 5.7 34 5-38 25-58 (63)
96 1ytz_T Troponin T; muscle, THI 25.0 1.5E+02 0.005 24.8 5.9 41 21-61 46-86 (107)
97 4g2k_A General control protein 25.0 3.5E+02 0.012 23.6 9.1 55 3-57 21-75 (125)
98 1nkp_B MAX protein, MYC proto- 24.9 1.9E+02 0.0064 22.0 6.1 52 6-60 22-76 (83)
99 3fpp_A Macrolide-specific effl 24.6 3.7E+02 0.013 23.8 9.5 36 21-56 66-101 (341)
100 2wt7_A Proto-oncogene protein 24.2 1.9E+02 0.0064 21.4 5.9 20 7-26 27-46 (63)
101 3vkg_A Dynein heavy chain, cyt 24.2 2.3E+02 0.0079 35.1 9.5 22 70-91 2030-2051(3245)
102 1ses_A Seryl-tRNA synthetase; 23.5 3.7E+02 0.013 26.2 9.3 24 69-92 72-95 (421)
103 3nmd_A CGMP dependent protein 23.3 1.8E+02 0.0063 23.1 5.9 23 39-61 41-63 (72)
104 2yko_A LINE-1 ORF1P; RNA-bindi 22.7 93 0.0032 29.3 4.8 41 22-62 4-44 (233)
105 2fxo_A Myosin heavy chain, car 22.5 3E+02 0.01 22.7 7.4 50 11-60 70-119 (129)
106 1jcd_A Major outer membrane li 22.5 1.2E+02 0.0039 22.7 4.3 29 10-38 4-32 (52)
107 3ghg_C Fibrinogen gamma chain; 22.3 2.5E+02 0.0084 28.2 7.9 25 36-60 89-113 (411)
108 3uun_A Dystrophin; triple heli 22.0 2.4E+02 0.0083 20.8 8.7 57 31-87 36-97 (119)
109 2v4h_A NF-kappa-B essential mo 22.0 3.5E+02 0.012 23.1 7.7 23 17-39 31-53 (110)
110 3uul_A Utrophin; spectrin repe 21.9 2.5E+02 0.0085 20.8 8.7 56 32-87 37-97 (118)
111 3ghg_A Fibrinogen alpha chain; 21.8 1.1E+02 0.0037 32.2 5.5 42 21-62 114-155 (562)
112 1uuj_A Platelet-activating fac 21.2 34 0.0012 28.0 1.3 21 12-37 58-78 (88)
113 3qh9_A Liprin-beta-2; coiled-c 20.9 3.4E+02 0.012 22.1 7.1 56 6-61 22-77 (81)
114 1u5p_A Spectrin alpha chain, b 20.9 3E+02 0.01 22.6 7.1 30 33-62 144-173 (216)
115 2dq0_A Seryl-tRNA synthetase; 20.8 4.7E+02 0.016 25.8 9.6 74 21-108 35-115 (455)
116 3k29_A Putative uncharacterize 20.8 4.8E+02 0.016 23.7 9.1 51 42-92 45-102 (169)
117 3ghg_A Fibrinogen alpha chain; 20.4 1.4E+02 0.0048 31.4 5.9 12 302-313 417-428 (562)
118 3fav_B ESAT-6, 6 kDa early sec 20.2 2.6E+02 0.0089 20.4 6.1 67 25-92 6-76 (94)
119 3m9b_A Proteasome-associated A 20.0 91 0.0031 29.6 4.2 36 47-91 56-91 (251)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.15 E-value=1.3 Score=40.16 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=48.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKEN 67 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~ 67 (417)
...++-+.+..|..+...|.+++...+..+..|+.+.+.+|..+++....|...+++....+.+
T Consensus 26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~ 89 (256)
T 3na7_A 26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE 89 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 3445667777777777888888888888888888888888888888888888777776644443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.70 E-value=1.7 Score=35.54 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=7.2
Q ss_pred hhhhhhhhhhhhHHHHHHhh
Q 039238 9 KVKLYSLRTQKMELDRRLLE 28 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~e 28 (417)
+..+..|..+..+|...|..
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~ 31 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKA 31 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.35 E-value=2.7 Score=34.31 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEE 49 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~E 49 (417)
|.|+.+|..+.-.+...+.+++.-+..|...-..++..+.+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 45 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVS 45 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 4
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.71 E-value=6 Score=34.35 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhccchhHHHHHHHHHHHhHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI-KMQREQIDASKENSQLIVLKEILKQREAEI 84 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI-~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEi 84 (417)
+|..-.+.-|.-|-+.-..-|.+-+.-.++-..+-..|-+.|++..... .+++|- -.++..|..-|+..+||+
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeL------qgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL------EGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666555666666666667776655553 222222 247888999999999999
Q ss_pred HHHHHhhh-ccccc
Q 039238 85 KDLRHQLE-YRVNV 97 (417)
Q Consensus 85 EdlK~rle-~P~~~ 97 (417)
|.|+...+ -|+.|
T Consensus 95 erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 95 ERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhchhhhhHh
Confidence 99998876 33443
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.28 E-value=6.2 Score=35.61 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE-------QKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde-------QK~lEsAl~EKq~eI~~m~E~~ 61 (417)
++-||..++..|.++|+.|..-++.||+.++.=+.. ..+|+.-+.-.+.+|..+++..
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888877765533 3444444444444444444433
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.78 E-value=6.6 Score=30.99 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL 43 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l 43 (417)
|+.++++++..+..++.+..+|...+..+++.+..|+..-..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555554444444444444444443
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.89 E-value=7.7 Score=32.15 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=34.5
Q ss_pred hhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238 14 SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 14 sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~ 55 (417)
..+++-+||.++|-.++.-+++|+..-.-||.+|.+-+.+-.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999988766543
No 8
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.41 E-value=7.3 Score=32.44 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=31.7
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 13 YSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 13 ~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
...+++-+||.++|-.++.-+++|+..-.-||.++.+-+.+...
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999988999998887765443
No 9
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.54 E-value=10 Score=31.60 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=28.7
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
+|.+..|.+.|.+|+.++.-|.+.|.+++..-.. +-+.+...+...+.+|.+++..
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666553321 2223333444444444444443
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.82 E-value=11 Score=31.12 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=15.6
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHhhhhh
Q 039238 2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQS 31 (417)
Q Consensus 2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqS 31 (417)
+|.+..|.+.|.+|+.++.-|.+.|.+++.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.13 E-value=6.1 Score=31.55 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 41 KALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 41 K~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
-+|+.+|.+|..+|++.++. +..|-..|.+|+++|.+|+..|.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~---------I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDAL---------IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887765 46778889999999999999883
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.95 E-value=5 Score=37.96 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=42.6
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQR 80 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqK 80 (417)
|.|+++|.++.+.-+|.|-.---++|+-||..++--+-. -+.-.+|.+++|. .|---|+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~~ 462 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---GQKKVEELEGEIT----------------TLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----------------HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 356777788888888888777777777776544322211 2234444444443 444456777
Q ss_pred HHHHHHHH
Q 039238 81 EAEIKDLR 88 (417)
Q Consensus 81 EAEiEdlK 88 (417)
+|+|+++|
T Consensus 463 ~~~~~~~~ 470 (471)
T 3mq9_A 463 SAEVERLR 470 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888876
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.92 E-value=18 Score=32.61 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=17.8
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
|.++......|...+.++...+..++.....++..+++.+.++..
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444433333
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.86 E-value=26 Score=28.30 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKE-----NSQLIVLKEILKQR 80 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~-----~~Qm~aL~E~LkqK 80 (417)
+-.|-|+..|+.++-....+.-.++.-+..+.+.-..+|.-+...+..|.+++.-..-.+. ...+..-...+..-
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998888888888887777777777777777777777776554321111 11122222234445
Q ss_pred HHHHHHHHHhhh
Q 039238 81 EAEIKDLRHQLE 92 (417)
Q Consensus 81 EAEiEdlK~rle 92 (417)
|+++.-|-+|++
T Consensus 85 E~ev~~L~Rriq 96 (101)
T 3u1c_A 85 ESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.46 E-value=26 Score=28.05 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=58.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKE-----NSQLIVLKEILKQ 79 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~-----~~Qm~aL~E~Lkq 79 (417)
.+-.|-|+..|+.++-....+.-.++.-+..+.+.-..+|.-+...+..|.+++.-..-... ...+..-...+..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~ 83 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATD 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998888888888887777777777777777777777766654431111 1122222334455
Q ss_pred hHHHHHHHHHhhh
Q 039238 80 REAEIKDLRHQLE 92 (417)
Q Consensus 80 KEAEiEdlK~rle 92 (417)
-|++..-|-+|++
T Consensus 84 AE~evasLnRriq 96 (101)
T 3u59_A 84 AEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776664
No 16
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.13 E-value=16 Score=37.03 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhhhhhhhH-------HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKME-------LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEI 76 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmE-------L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~ 76 (417)
.+++|+-.+.+|...=.+ |+..+..+|..+-.+.+.-+.....|++++..|+.... ..-+.++..|..+
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~----~~~~~~i~~L~~~ 176 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLD----NNIPSSLRVLRAV 176 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHH
Confidence 366777777777655444 33444444444444444444444445555544443222 1123455555444
Q ss_pred HHHhHHHHHHHHH
Q 039238 77 LKQREAEIKDLRH 89 (417)
Q Consensus 77 LkqKEAEiEdlK~ 89 (417)
|.+....|..|..
T Consensus 177 ~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 177 IDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 17
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.33 E-value=20 Score=28.93 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
|+-.+-..|+-+++|+-+|-+|.+-=.-.+.=|..|+ .+-..+..-.++|+.|++||+..
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~------~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD------QEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556788888888888887665443333333333 23346667778999999999864
No 18
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=70.08 E-value=27 Score=27.49 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=37.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
+.|.+|++|+..|..+|.+++.... .+-+.+-..+...+.+|.+++... +.+ ..+...|+.+=-..++||.--+.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~---~~l~~~q~~i~~lE~el~~~r~e~-~~q-l~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA---RERDTSRRLLAEKEREMAEMRARM-QQQ-LDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678889999999999988887542 233444445555555555555443 111 11223444444455677766555
Q ss_pred hhh
Q 039238 90 QLE 92 (417)
Q Consensus 90 rle 92 (417)
-|+
T Consensus 78 LLE 80 (86)
T 1x8y_A 78 LLE 80 (86)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=68.71 E-value=48 Score=27.50 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHh-------hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLL-------EMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQ 79 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~-------emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~Lkq 79 (417)
+|..+...|..++.+|...|- +.+.....|....-.||+-+.+.+.++....+ +...|..--+.
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee---------~~~~L~~~kkk 108 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE---------MNAELTAKKRK 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 445555556666666554332 22333333444444455555555555444443 44566666677
Q ss_pred hHHHHHHHHHhhhc
Q 039238 80 REAEIKDLRHQLEY 93 (417)
Q Consensus 80 KEAEiEdlK~rle~ 93 (417)
.+.++.+|+..+++
T Consensus 109 le~e~~~Lk~~led 122 (129)
T 2fxo_A 109 LEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888887754
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.99 E-value=9.5 Score=34.76 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=44.6
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhHHHHHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
|...|..|+..+-.|+.+|-+++-.-|.|-...-.+.+.|+..+..+++.=|+.. ...+-+.-..|++-+|...-|+-|
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666667777777777776666554 444455566666667777777777
Q ss_pred HHHhhh
Q 039238 87 LRHQLE 92 (417)
Q Consensus 87 lK~rle 92 (417)
||.-+.
T Consensus 173 Lk~El~ 178 (189)
T 2v71_A 173 LRQELA 178 (189)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 776663
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.73 E-value=18 Score=34.89 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=27.2
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|...+.++++.+..|+.++...|.++...+.+|....+..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4445666677777777777777777777777776555544
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.38 E-value=14 Score=29.19 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=39.3
Q ss_pred hhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 15 LRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 15 Lr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|+.+-.+|..||.+||+-++++-++--.|-.++.+.|.+|..|+...
T Consensus 5 ~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 5 LSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788899999999999999999999999999999998887643
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.97 E-value=44 Score=32.19 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 039238 70 LIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rl 91 (417)
+..|++=+.+..++|.+|...+
T Consensus 560 ~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 560 QAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555444
No 24
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.06 E-value=9.7 Score=30.78 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=36.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHHHHHH---HHHHHhHHH
Q 039238 34 DSLKDEQKALESALEEKQNEIKMQREQID-----ASKENSQLIVLK---EILKQREAE 83 (417)
Q Consensus 34 ~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-----a~k~~~Qm~aL~---E~LkqKEAE 83 (417)
+.|.+.-+.|-++|.+|+.||++++|... +..=+|+++.|- -+|++|=+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 45666778888999999999999999886 444477777763 345555443
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=63.76 E-value=18 Score=39.23 Aligned_cols=12 Identities=8% Similarity=0.291 Sum_probs=4.6
Q ss_pred HhHHHHHHHHHh
Q 039238 79 QREAEIKDLRHQ 90 (417)
Q Consensus 79 qKEAEiEdlK~r 90 (417)
+.+++++++...
T Consensus 924 ~Le~~l~ele~e 935 (1184)
T 1i84_S 924 ELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.47 E-value=39 Score=28.88 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHHHH
Q 039238 71 IVLKEILKQREAEIKDL 87 (417)
Q Consensus 71 ~aL~E~LkqKEAEiEdl 87 (417)
.+|.+-+.+.|+++++.
T Consensus 120 ~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 120 NKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45555555566666554
No 27
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.74 E-value=48 Score=27.06 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 35 SLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 35 sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
-|-.|-+.|---+.|.+||-.|-.-+.++-+ .+++.|.+.|..++|||+-|...+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK--~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK--AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555556666666677777766666665555 689999999999999999998876
No 28
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.75 E-value=16 Score=35.29 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=39.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.|.++|..++..|...|...++.|.+|...-+.+++.+.+.+..|.+++...
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888888888888887777777777777777777776654
No 29
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=58.74 E-value=40 Score=27.24 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-cc-chhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 37 KDEQKALESALEEKQNEIKMQREQIDA-SK-ENSQLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 37 KdeQK~lEsAl~EKq~eI~~m~E~~~a-~k-~~~Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
+...++|+..|.+.+--|.-+.+...+ .+ .+..+..=+..+.+.+++|+.||..|..+
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~~~ 94 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDRR 94 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666666666666666665541 11 45566677888889999999999998643
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.46 E-value=31 Score=32.79 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHh------------hHHHHHHHHHHHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDS------------LKDEQKALESALEEKQNEI 54 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~s------------LKdeQK~lEsAl~EKq~eI 54 (417)
.++...++.++....+...++.+++..+.. |....+-.|.-+.+.|.++
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555554444555555444443333 4444454554454444444
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.59 E-value=17 Score=31.06 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNE 53 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~e 53 (417)
++++.-.+|+|..+-..+.-++.++..-+..|+.+-..|+--+.+.+.+
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444444444444444444444444444444443
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.54 E-value=47 Score=33.75 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.7
Q ss_pred hHHHHHHHHHhhh
Q 039238 80 REAEIKDLRHQLE 92 (417)
Q Consensus 80 KEAEiEdlK~rle 92 (417)
.++.|+.|+.+++
T Consensus 173 L~~~~~~l~~ki~ 185 (464)
T 1m1j_B 173 LRAVIDSLHKKIQ 185 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 33
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.29 E-value=68 Score=26.00 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLR 88 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK 88 (417)
..+|++|..++.-|.+.|.+++...+ .+...+.+.+...+.++.+++... +.+ ..+-..|+.+=-..+.||.--.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~-~~q-l~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQM-QQQ-LNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999887543 344455555666666666665544 111 1122345555445566666555
Q ss_pred Hhh
Q 039238 89 HQL 91 (417)
Q Consensus 89 ~rl 91 (417)
.-|
T Consensus 86 kLL 88 (95)
T 3mov_A 86 KLL 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 34
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.11 E-value=31 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
++..|.+-+...+.+++.|...+.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555443
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=51.82 E-value=1.2e+02 Score=27.35 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred chhhhhhhhhhh-------hhhhhhHHHHHH-------hhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYS-------LRTQKMELDRRL-------LEMQSTIDSLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 3 RK~EEmkAK~~s-------Lr~QKmEL~rkl-------~emqSTi~sLKdeQK~lEsAl~EKq~eI~ 55 (417)
|.++||.+|+-+ ||-+-+|+...+ .|||..++.|.+.-..||..+...|..+.
T Consensus 13 kQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 13 KQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555432 444455555444 44444444444444444444444444443
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.78 E-value=43 Score=27.94 Aligned_cols=62 Identities=29% Similarity=0.403 Sum_probs=34.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 33 IDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 33 i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
..+|+++-..||+.+.....++..|.+.. ..+.......-..+.+.+.|||||-.-|=+-||
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l--~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDI--AKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666655443 222334445555566667777777665544444
No 37
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.22 E-value=33 Score=33.39 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhh
Q 039238 81 EAEIKDLRHQLE 92 (417)
Q Consensus 81 EAEiEdlK~rle 92 (417)
--+|.|||....
T Consensus 51 ~n~~~elkgnIr 62 (403)
T 4etp_A 51 HNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHCSEE
T ss_pred HHHHHHcCCCeE
Confidence 445566665443
No 38
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=48.00 E-value=6.8 Score=30.27 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=39.0
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
-.||..|-..-...++.-..+..+++++-..|++||+.|.--+.++..
T Consensus 11 gekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 11 GEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888888888999999999999999999999999766555543
No 39
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.81 E-value=1e+02 Score=24.21 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+...+..+...+.......++||..++....+.+.+.... +.. -+-...|...-.+.|+.|.||..|++.
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql-~ea-Ee~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSM-KQL-EDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555666677777776666666666652 111 123444444455667778888887764
No 40
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.44 E-value=1.1e+02 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-h---ccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 41 KALESALEEKQNEIKMQREQID-A---SKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 41 K~lEsAl~EKq~eI~~m~E~~~-a---~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
..||..++..+.+|..+++... + .+.+..+..|..-|...+++|+.+=.|.
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665553 1 2456778888888888888888876664
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.65 E-value=6.7 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=10.4
Q ss_pred hhhhhhHHHHHHhhhhhhhHhhH
Q 039238 15 LRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 15 Lr~QKmEL~rkl~emqSTi~sLK 37 (417)
|+.+..+|+.++.++..+++.|+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.50 E-value=1.1e+02 Score=23.60 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
+.+|-|+..|+.++-....++-.++.-+......-..+|..+...+..|.+++
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34667777777777666666666655544444444444444444444444444
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.35 E-value=1e+02 Score=29.21 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=22.0
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+...++.++.....+-.++-.++...+..+.+|+.++|..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHh
Confidence 3444444444444444455445555666677777776644
No 44
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.18 E-value=1.1e+02 Score=23.76 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=43.9
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
|.|.+|+.|+.-|.+.|.+++..... +.+.+...+...+.+|.+++... +.+ ..+...|+.+=-..+.||.--+.
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~-~~q-~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEM-ARH-LREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35678888888888888888766532 33444445555555555555443 111 11233444444455677766555
Q ss_pred hhh
Q 039238 90 QLE 92 (417)
Q Consensus 90 rle 92 (417)
-|+
T Consensus 76 LLE 78 (84)
T 1gk4_A 76 LLE 78 (84)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.24 E-value=18 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=18.1
Q ss_pred HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 26 LLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE 59 (417)
Q Consensus 26 l~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E 59 (417)
+.+|+.-+..|+.+-..|++-+...+.|+.+++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555543
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.24 E-value=59 Score=27.50 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhh----hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQS----TIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqS----Ti~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
++-+|+.+...|..+.-++++|+...++ ++++|.++--.|=..-...+-.|+.+...+.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4567888889999999999999888875 5777877777777777777778888877664
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.47 E-value=13 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=12.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhh
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSL 36 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sL 36 (417)
+|..++..|..+..+|...|..++..+..|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333
No 48
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.85 E-value=1e+02 Score=27.36 Aligned_cols=59 Identities=31% Similarity=0.414 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 36 LKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 36 LKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
++++...|+.-+.....++..|.+.. ..+.......-..+.+.+.|||||-.-|=+-||
T Consensus 42 ~r~~~~~l~~~~~~~~~e~~~L~~~l--~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 100 (154)
T 2ocy_A 42 LKEDYNTLKRELSDRDDEVKRLREDI--AKENELRTKAEEEADKLNKEVEDLTASLFDEAN 100 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555665554443 222334444556677888899998877755555
No 49
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=40.47 E-value=1.7e+02 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALE 44 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lE 44 (417)
+++++..+..+-+++-+|..++.+|..-.+.|..+-+.+.
T Consensus 38 ~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 38 LENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555544444443
No 50
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.23 E-value=63 Score=24.92 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=29.1
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALE 48 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~ 48 (417)
-+.|.||-|-++|+.-..-|.-|+..=..--|.||..+-
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999888887776655555566776553
No 51
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=40.16 E-value=48 Score=32.53 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR 58 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~ 58 (417)
|-.+..+|++.+..|+.++.+|.+.+..++..+..|+..--..|.......|+|-.|+
T Consensus 1 ~~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445577778888888888888888887777777776554444444344444444433
No 52
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.14 E-value=22 Score=26.07 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
.+.+||..+..|..+-..|.+.+...+.++.+|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666543
No 53
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.12 E-value=1.6e+02 Score=24.32 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=17.6
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLK 37 (417)
||+-|+--.+.+.+....++.+...+|+-.|..++
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555554444
No 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.20 E-value=25 Score=35.76 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=37.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRH 89 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~ 89 (417)
+++..-+.++.+..+...+|+--+-.+..+.+....+|.+.+..+..|.|....+ ..=.+.|.++..+.|+.+.
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~------~~e~~~l~~~~~~~e~~~~ 394 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL------QAAKEELEQRQNELQAMMQ 394 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888889998888899999999999999999999998888522 2234678888888888888
Q ss_pred hhhc
Q 039238 90 QLEY 93 (417)
Q Consensus 90 rle~ 93 (417)
+|+-
T Consensus 395 ~l~~ 398 (575)
T 2i1j_A 395 RLEE 398 (575)
T ss_dssp ----
T ss_pred HHHH
Confidence 8744
No 55
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.24 E-value=1e+02 Score=24.54 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 24 RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 24 rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
+-+.+|+.-|+.|..+--.|--.+++.+++|++|+++-.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999999998763
No 56
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.12 E-value=1.7e+02 Score=24.10 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=45.1
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh------hccchhHHHHHHH---
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID------ASKENSQLIVLKE--- 75 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~------a~k~~~Qm~aL~E--- 75 (417)
+++|+..|..+..++.-|.-.+..++..++.+|..-..--+.-..-+++|.-++.-.. +.- -.++.+|+|
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dL-E~~iesL~eEl~ 100 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDL-ERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH-HHHHHHHHHHHH
Confidence 4567777777777777777777777777777665322211222333455554443222 111 124445544
Q ss_pred HHHH-hHHHHHHHHHhh
Q 039238 76 ILKQ-REAEIKDLRHQL 91 (417)
Q Consensus 76 ~Lkq-KEAEiEdlK~rl 91 (417)
.||+ -|+||.+|.+++
T Consensus 101 FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 101 FLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 2222 366777776554
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.19 E-value=76 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.7
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQST 32 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqST 32 (417)
.+...+...+..|..++.++...+.++...
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l 49 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEIESL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456778888999999999999988888654
No 58
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.15 E-value=1.2e+02 Score=21.66 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=25.8
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 24 RRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 24 rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
..+..++..+..++..-..+.+.|.+-...++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667776666677777777777777766644
No 59
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.81 E-value=2e+02 Score=24.28 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=40.5
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|...+..||..+..|+.+|-+|+-.-|.|--..-..-+.|+.-++.+++-=|++
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErn 93 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555666777777788888888887777777777777777777777777766665
No 60
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=35.03 E-value=97 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.226 Sum_probs=12.5
Q ss_pred HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 26 LLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 26 l~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
..+++....+|-.+-..|-..|.+.+.....
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~ 67 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEE 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444433333334444443333
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.31 E-value=1.9e+02 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.|+..|.+..+.-|+.|.+|..-|
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888887666
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.56 E-value=1.6e+02 Score=36.42 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=11.5
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238 30 QSTIDSLKDEQKALESALEEKQNEIK 55 (417)
Q Consensus 30 qSTi~sLKdeQK~lEsAl~EKq~eI~ 55 (417)
...++.|+.+-..++-.|++|+.+..
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555544444
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.24 E-value=73 Score=27.86 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 039238 37 KDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVN 96 (417)
Q Consensus 37 KdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~ 96 (417)
+.+.+.|.+.|.-...++..|.+.. ..+.......-.-+.+.+.|||||-.-|=+-||
T Consensus 31 ~~~l~~l~~~l~~~~~e~~~L~~~l--~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN 88 (135)
T 2e7s_A 31 KEDYNTLKRELSDRDDEVKRLREDI--AKENELRTKAEEEADKLNKEVEDLTASLFDEAN 88 (135)
T ss_dssp HHHHHHHHHHTTTHHHHHHTHHHHH--HHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555554443 233345555556778889999999888866666
No 64
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=32.04 E-value=1.1e+02 Score=22.72 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238 47 LEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD 86 (417)
Q Consensus 47 l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd 86 (417)
|.|+-.-|..|=..+.+..--+.+.+|.++|++...|++.
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 5566666777777776777789999999999999999875
No 65
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.42 E-value=94 Score=25.00 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=36.2
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEK 50 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EK 50 (417)
-++....|-+-+||.=..||..=-.-++..|.-|..++..|+..++-.
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888988888888777777777888888888887765433
No 66
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.86 E-value=1.9e+02 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhccc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEYRV 95 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~P~ 95 (417)
.+..|..-+...+.++++++..|.--+
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888887775443
No 67
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=30.69 E-value=2.2e+02 Score=23.33 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=34.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHhHHHHHHH
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQID--ASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
.++..|-..++.+++.+...+..|..+.+.+. ...+.+....|...+..-...-..|
T Consensus 140 ~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~~~l~~rw~~l 198 (214)
T 1s35_A 140 EAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKN 198 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888888877776 3334333444444433333333333
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.67 E-value=1.3e+02 Score=22.00 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLK 37 (417)
+++|..+...|..+..+|...|..|+..+..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.55 E-value=2.3e+02 Score=23.86 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=32.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNE 53 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~e 53 (417)
++-|+-.+..|| .+|.+-..|-|..|..|++.--.||+.|++...+
T Consensus 17 Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 17 IERLYREISGLK---AQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444 4556667888888999999999999999988744
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.30 E-value=1.5e+02 Score=28.61 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=36.5
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhccc
Q 039238 30 QSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRV 95 (417)
Q Consensus 30 qSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~ 95 (417)
+-++.+|.++--.||..+...+.+|..|++.. ..+...|++.+..|.+|..++.-|.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l---------~~~~~~i~~l~~~i~~l~~~~~~~~ 60 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMW---------RVNQQFVTRLQQQLVDIRQTCSRPC 60 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566777777777888888888888887655 2344445555555666666665554
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.26 E-value=2.4e+02 Score=23.48 Aligned_cols=83 Identities=8% Similarity=0.210 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----h-hccchhHHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI-----D-ASKENSQLIVLKEIL 77 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~-----~-a~k~~~Qm~aL~E~L 77 (417)
-++.++..|..|..+.-+.+..+..|+.-+.--+......|+.....+.|+--+.... . ++...-+.+.+..-.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn 85 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN 85 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877777776666666666667777777777765553222 1 444444555555555
Q ss_pred HHhHHHHHH
Q 039238 78 KQREAEIKD 86 (417)
Q Consensus 78 kqKEAEiEd 86 (417)
.+..++|.|
T Consensus 86 ~~L~~qL~d 94 (97)
T 2eqb_B 86 KRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666666554
No 72
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.78 E-value=1.2e+02 Score=27.22 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLEYR 94 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle~P 94 (417)
++.++...|++.+++++.++..+.+-
T Consensus 130 ~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 130 EMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55666777788888888888887654
No 73
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.44 E-value=1.1e+02 Score=25.39 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 039238 40 QKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 40 QK~lEsAl~EKq~eI~~m~E~~ 61 (417)
...|+..+++.+.+|..|+...
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~ 104 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEAL 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554443
No 74
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.44 E-value=2.6e+02 Score=23.60 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-hccch-------hHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 36 LKDEQKALESALEEKQNEIKMQREQID-ASKEN-------SQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 36 LKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~-------~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
|....++|+.+|...+-.|.-+++... +.++| ..+..=+..+...+.+|.++|..|
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666666665554 22333 335555667777788888888765
No 75
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.43 E-value=52 Score=24.41 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=21.7
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
.+.+|+.-+..|..+-..|.+.+...+.++.++...
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555543
No 76
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.01 E-value=79 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=24.6
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhh
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQST 32 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqST 32 (417)
.+...+...+..|..|+.++...+.++...
T Consensus 15 ~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 15 QQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456778888999999999999988888754
No 77
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.87 E-value=1.3e+02 Score=25.09 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=29.1
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+|.....+|-..|..|-.+-=.||.-+.-+.++|+.|..+-
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 56777777777777777777777777777777777766654
No 78
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=28.78 E-value=1.9e+02 Score=24.52 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhcccccc-cccCCC
Q 039238 47 LEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVW-SVSADD 104 (417)
Q Consensus 47 l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P~~~~-sVstdd 104 (417)
+.|...++..+++.. ...+-+.++++.-+.-..=|.+|-..+..|+..- .|+|+.
T Consensus 68 ~~e~~~el~~l~~~l---~~np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~i~v~tg~ 123 (151)
T 2pih_A 68 LKQVEAKIDALQEEL---EEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGG 123 (151)
T ss_dssp HHHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 344444444443333 4455777777777777777888888888888743 566664
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.74 E-value=3.3e+02 Score=24.70 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhh----hHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 8 MKVKLYSLRTQKMELDRRLLEMQST----IDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 8 mkAK~~sLr~QKmEL~rkl~emqST----i~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
|+.++..|..+...+++|+...++- +++|.++--.|-......+..|+.+...
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433322 4444444333444444444444444333
No 80
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=28.70 E-value=80 Score=25.98 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhH
Q 039238 34 DSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQRE 81 (417)
Q Consensus 34 ~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKE 81 (417)
-||.+-|+-||+|-+- +.++|.....+=...+.-.+|.||-||
T Consensus 42 ~SleeIqkKLeAAeER-----Rks~EA~~L~~Laekreh~~EV~k~~~ 84 (87)
T 4f6r_C 42 PSLEEIQKKLEAAEER-----RKAHFAAMLERLQEKDKHAEEVRKNKE 84 (87)
T ss_dssp CTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4788999999999433 333333321112234455555555554
No 81
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.54 E-value=2.6e+02 Score=27.78 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 36 LKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 36 LKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|.++...||+.+...+..|..|++..
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44444444444444444555554433
No 82
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=27.98 E-value=2.5e+02 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=21.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
.++..|-..++.+++.+...+..|..+...+.
T Consensus 139 ~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~ 170 (213)
T 1cun_A 139 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777776665
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.81 E-value=1.1e+02 Score=29.89 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=33.4
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
|+++++.++-.|..++.+|...+..++..+..|+......|..-...-|+|..|+.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 566677777777777777766666666666666555555454444444444444433
No 84
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=27.38 E-value=2.3e+02 Score=23.40 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=37.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHhHHHHHHH
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQID--ASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
+++..|-..++.+|+.+...+..|..+.+.+. ...+++....|.+-|......-++|
T Consensus 88 ~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L 146 (161)
T 3lbx_A 88 TNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLL 146 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 45666778889999999999999999988886 3445544444444444443333333
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.35 E-value=1.7e+02 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.+.+|.-=+++.|.+++....+|
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 86
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.34 E-value=1.4e+02 Score=21.90 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
+|..+|.-|+++++.|...-.-|=+.|..-|..|++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888777766666666655555443
No 87
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.15 E-value=23 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=16.0
Q ss_pred CcchhhhhhhhhhhhhhhhhHHHHHH
Q 039238 1 MKRKNEEMKVKLYSLRTQKMELDRRL 26 (417)
Q Consensus 1 mkRK~EEmkAK~~sLr~QKmEL~rkl 26 (417)
||||+-+..+-|--|+-|.+-|...|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 56666666666666666665555443
No 88
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.93 E-value=1.7e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=15.1
Q ss_pred HHHHhhhhhhhHhhHHHHHHHHHHHH
Q 039238 23 DRRLLEMQSTIDSLKDEQKALESALE 48 (417)
Q Consensus 23 ~rkl~emqSTi~sLKdeQK~lEsAl~ 48 (417)
.+.|..+...|..|-.++..|++.|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666554
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.53 E-value=1.7e+02 Score=26.48 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA 46 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsA 46 (417)
+++++...|..+.-.|.+.+..|.+.+.-+-+.-+++|.+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555543
No 90
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.08 E-value=82 Score=23.61 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=35.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESAL 47 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl 47 (417)
+--++.||..|......|.|--..++..|+.|.|+--.||...
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888899999999999999999988877544
No 91
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.78 E-value=2.5e+02 Score=22.50 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH--------------------------------------HHHHHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ--------------------------------------KALESA 46 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ--------------------------------------K~lEsA 46 (417)
...++.-+..|..++..|...+.+.+.++..|+.-. +.++.|
T Consensus 10 ~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA 89 (133)
T 1fxk_C 10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDA 89 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHH
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238 47 LEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 47 l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
.+-.+.+|..+++.. .+-..++..+++.+...+..|+++
T Consensus 90 ~~~l~~r~~~l~~~~--~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTL--QKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
No 92
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=25.65 E-value=2.3e+02 Score=21.73 Aligned_cols=68 Identities=4% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH--hh-hccc--hhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ--ID-ASKE--NSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~--~~-a~k~--~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
....|+++.+.|......|++.|.+.+..|..+... =. .+.. ...+.......++...-|.+|...+.
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~ 84 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAAR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999887 22 1111 22334444444455555555555553
No 93
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.40 E-value=2.3e+02 Score=21.66 Aligned_cols=25 Identities=0% Similarity=0.112 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 68 SQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 68 ~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
..+..|..-+...+.++++++..|.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777664
No 94
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.39 E-value=3.6e+02 Score=24.00 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
.|..+++.++.|...-+.|+..|.||..-+-.++.-..+ -..|...+-+-|+..++|=.+|=.|+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~a--Lqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALIS--GTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666555444332211 12344444555555555555554443
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.98 E-value=1.7e+02 Score=21.84 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHH
Q 039238 5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKD 38 (417)
Q Consensus 5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKd 38 (417)
.++|..+.-.|..+..+|..+|..++.-+.+|++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666654
No 96
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.97 E-value=1.5e+02 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=32.4
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
+|.....+|-..|+.|-.+-=.||..+.-+.++|+.|..+-
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 67788888888888888887888888888888887777664
No 97
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.96 E-value=3.5e+02 Score=23.63 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=43.9
Q ss_pred chhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039238 3 RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQ 57 (417)
Q Consensus 3 RK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m 57 (417)
-|+||+-.|+|-+-++-..|+.-|..+.+.+.-+-|+--..=++|.+.-+.+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~ 75 (125)
T 4g2k_A 21 DKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTF 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999988887655445555555555544
No 98
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.92 E-value=1.9e+02 Score=21.98 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ---KALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ---K~lEsAl~EKq~eI~~m~E~ 60 (417)
++|+.-+-.+...|+. ++.=+..+++|++.-| ..|++.+++...++..++..
T Consensus 22 ~~Lr~lvP~~~~~k~s---K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 22 HSLRDSVPSLQGEKAS---RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHTTSGGGTTSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445543 3444455555554433 44444444444444444433
No 99
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.60 E-value=3.7e+02 Score=23.85 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM 56 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~ 56 (417)
++...+...++.+..++..-...++.|...+.++..
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 101 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 100
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.25 E-value=1.9e+02 Score=21.37 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=7.8
Q ss_pred hhhhhhhhhhhhhhHHHHHH
Q 039238 7 EMKVKLYSLRTQKMELDRRL 26 (417)
Q Consensus 7 EmkAK~~sLr~QKmEL~rkl 26 (417)
+|..+...|..++.+|...|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.22 E-value=2.3e+02 Score=35.09 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 039238 70 LIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 70 m~aL~E~LkqKEAEiEdlK~rl 91 (417)
+.++++-|+..|+.|+.|+..|
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554
No 102
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.52 E-value=3.7e+02 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 69 QLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 69 Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
++..|++-|+..|+++.++...|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 72 RGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666654
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.29 E-value=1.8e+02 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039238 39 EQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 39 eQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
.-++||..|.||..+|..++...
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776543
No 104
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.68 E-value=93 Score=29.29 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 22 LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 22 L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
|..|+.+++.-|+.|-+...+|..|..+++.+|+++++...
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888888888888888887777777766543
No 105
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.52 E-value=3e+02 Score=22.68 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=32.2
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 11 KLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 11 K~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
....|..+|.+|..+|.+|++-+....+.-..|.++-...+.++.-++..
T Consensus 70 ~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888887777777666666666666655555555555443
No 106
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.51 E-value=1.2e+02 Score=22.73 Aligned_cols=29 Identities=3% Similarity=0.043 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhhhHhhHH
Q 039238 10 VKLYSLRTQKMELDRRLLEMQSTIDSLKD 38 (417)
Q Consensus 10 AK~~sLr~QKmEL~rkl~emqSTi~sLKd 38 (417)
+|+-.|+++--.|..+|-.|++-+..|+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777788878777777776
No 107
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.26 E-value=2.5e+02 Score=28.23 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238 36 LKDEQKALESALEEKQNEIKMQREQ 60 (417)
Q Consensus 36 LKdeQK~lEsAl~EKq~eI~~m~E~ 60 (417)
+-+++..+|+.+.-..+.|+.|+..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555555556666666554
No 108
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.03 E-value=2.4e+02 Score=20.77 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=36.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----c-cchhHHHHHHHHHHHhHHHHHHH
Q 039238 31 STIDSLKDEQKALESALEEKQNEIKMQREQIDA----S-KENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 31 STi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a----~-k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
.++..+-..++.|+..+...+..|..+.+.+.. . ..++....|.+-|......-+.|
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L 97 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778889999999999999999888861 1 12444445554444433333333
No 109
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.00 E-value=3.5e+02 Score=23.08 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=10.0
Q ss_pred hhhhHHHHHHhhhhhhhHhhHHH
Q 039238 17 TQKMELDRRLLEMQSTIDSLKDE 39 (417)
Q Consensus 17 ~QKmEL~rkl~emqSTi~sLKde 39 (417)
.+-.....-|..+|..++.||.+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~e 53 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEE 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 110
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.94 E-value=2.5e+02 Score=20.85 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=35.7
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--h---ccchhHHHHHHHHHHHhHHHHHHH
Q 039238 32 TIDSLKDEQKALESALEEKQNEIKMQREQID--A---SKENSQLIVLKEILKQREAEIKDL 87 (417)
Q Consensus 32 Ti~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--a---~k~~~Qm~aL~E~LkqKEAEiEdl 87 (417)
++..+-..++.|+..+...+..|..+.+.+. . ...++....|++-|......-+.|
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L 97 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEAL 97 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4555667888899999999999999988886 1 122344555555444433333333
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.79 E-value=1.1e+02 Score=32.20 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
||.++|..|+.+|++-...-+.|++.|+++-.+|..|+--..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777888888888888877765543
No 112
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=21.17 E-value=34 Score=27.99 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=10.7
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHhhH
Q 039238 12 LYSLRTQKMELDRRLLEMQSTIDSLK 37 (417)
Q Consensus 12 ~~sLr~QKmEL~rkl~emqSTi~sLK 37 (417)
++.+|-|| |||+||+.+..|+
T Consensus 58 TSViRLQK-----KImdLE~~~~~l~ 78 (88)
T 1uuj_A 58 TSVIRLQK-----KVMELESKLNEAK 78 (88)
T ss_dssp TCHHHHHH-----HHHHHHHHHHHTT
T ss_pred HHHHHHHH-----HHHHHHHHHHHHH
Confidence 45566554 4555554444443
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.86 E-value=3.4e+02 Score=22.10 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=32.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238 6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61 (417)
Q Consensus 6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~ 61 (417)
|.+---|-.||.--.||.+.=...+--+.|=|++--.|--.|++|+.+|+-+++..
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333344444444444443333344455555666666777889999999888764
No 114
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=20.85 E-value=3e+02 Score=22.55 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=15.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039238 33 IDSLKDEQKALESALEEKQNEIKMQREQID 62 (417)
Q Consensus 33 i~sLKdeQK~lEsAl~EKq~eI~~m~E~~~ 62 (417)
+..|-..++.+++.+...+..|..+.+.+.
T Consensus 144 v~~ll~kh~~~~~el~~~~~~i~~l~~~g~ 173 (216)
T 1u5p_A 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGK 173 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334445555555555555555555555443
No 115
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.78 E-value=4.7e+02 Score=25.85 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHhhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 039238 21 ELDRRLLEMQSTIDSLKDEQKALESALEE-------KQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY 93 (417)
Q Consensus 21 EL~rkl~emqSTi~sLKdeQK~lEsAl~E-------Kq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~ 93 (417)
+|..+...++..++.|+.+++.+-..+.. .+.-+..+++.. .++.+|.+-|...+++|.++=-.+
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i-- 106 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIV------KRIGELENEVEELKKKIDYYLWRL-- 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhC--
Q ss_pred ccccccccCCCCCCc
Q 039238 94 RVNVWSVSADDPSNP 108 (417)
Q Consensus 94 P~~~~sVstddPSnp 108 (417)
|=.. ||+-|
T Consensus 107 pN~~------~~~vP 115 (455)
T 2dq0_A 107 PNIT------HPSVP 115 (455)
T ss_dssp CCCC------CTTSC
T ss_pred CCCC------CccCC
No 116
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.75 E-value=4.8e+02 Score=23.69 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccch---hHHHH----HHHHHHHhHHHHHHHHHhhh
Q 039238 42 ALESALEEKQNEIKMQREQIDASKEN---SQLIV----LKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 42 ~lEsAl~EKq~eI~~m~E~~~a~k~~---~Qm~a----L~E~LkqKEAEiEdlK~rle 92 (417)
+..-.+.+++.-|++|++--.-+.+. .||-+ |+|-|.+.|..+++.+.+++
T Consensus 45 ~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve 102 (169)
T 3k29_A 45 ERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVL 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788898877644443 35555 78888888888888777664
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.40 E-value=1.4e+02 Score=31.39 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred cccccccccccC
Q 039238 302 YRLDQDELRSRS 313 (417)
Q Consensus 302 ykdDq~~L~~Re 313 (417)
++.|+.-|++-+
T Consensus 417 skg~kel~ig~e 428 (562)
T 3ghg_A 417 SKGDKELRTGKE 428 (562)
T ss_dssp ------------
T ss_pred cCCCceeecccc
Confidence 344444444433
No 118
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=20.20 E-value=2.6e+02 Score=20.45 Aligned_cols=67 Identities=6% Similarity=0.156 Sum_probs=42.7
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238 25 RLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKE----NSQLIVLKEILKQREAEIKDLRHQLE 92 (417)
Q Consensus 25 kl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~----~~Qm~aL~E~LkqKEAEiEdlK~rle 92 (417)
....|+++...|...-..|++.|.+..+.+..|...=. +.. ...+..+....++...-|.+|...+.
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~-G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG-GSGSEAYQGVQQKWDATATELNNALQNLARTIS 76 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGT-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888899999999999999999999988865442 222 22344444445555555555555553
No 119
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.05 E-value=91 Score=29.62 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238 47 LEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQL 91 (417)
Q Consensus 47 l~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl 91 (417)
+.+++.++..+.++. ..|.+.|+....||+.||..+
T Consensus 56 l~eL~~ql~~L~arN---------e~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 56 IHQLEARIDSLAARN---------SKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHTTTH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554433 334445555555555555443
Done!