BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039239
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 30 GCSKLKRLPE-FSSAGNIEEIC--GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHEL 86
GC+ L+ P F ++ + C L +LP I +L L+ L+L GC N+ +LP +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 87 GNLEA 91
L A
Sbjct: 298 AQLPA 302
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 55 LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA---------LNSLYAKGIATTEV 105
L++LP+SI L L+ L++ C + +LP L + +A L SL + +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 106 PSSVVRLNN 114
P+S+ L N
Sbjct: 199 PASIANLQN 207
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 48 EICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG-IATTEVP 106
++ GC L++ P LK L L CSN+ LP ++ L L L +G + + +P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 107 SSVVRL 112
S + +L
Sbjct: 295 SLIAQL 300
>pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 24/72 (33%)
Query: 198 GYVIFPGNEIPKWFKFQSVGS-----------------SSSI-----TLEMPTPLPGCFS 235
GY + N++PKW +VG+ SS++ LE T LPGC
Sbjct: 287 GYNFYKANDVPKWNACAAVGTLAATLVNCGAGRAAQNVSSTLLYFNDILEKETGLPGCDY 346
Query: 236 NK--NRVLGFTF 245
K +GF+F
Sbjct: 347 GKVEGTAVGFSF 358
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 33/145 (22%)
Query: 52 CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLP---HELGNLEALNSLYAKGIATTEVPSS 108
K+ ++ S LK L + L C N +LP ++L L++LN +GI+ ++ +
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Query: 109 VVRLN----------------NKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHF 152
RL N L E + S + ++GLL D +H +RH
Sbjct: 537 WTRLADDEDTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLL-------DCVH-NKVRHL 588
Query: 153 DLSG------NFKLDRKEVRGIFED 171
+ G + KLD ++ I ED
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPED 613
>pdb|3MAZ|A Chain A, Crystal Structure Of The Human Brdg1STAP-1 Sh2 Domain In
Co The Ntal Ptyr136 Peptide
Length = 125
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 206 EIP--KWFKFQSVGSSSSITLEMPTPLPGCFS 235
+IP K +K SVG + +I LE P LP FS
Sbjct: 60 DIPRIKHYKVMSVGQNYTIELEKPVTLPNLFS 91
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 35 KRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI----QKLPHELGNLE 90
K PE+ N E + + S ++ L +++L+ + + PH + +
Sbjct: 718 KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSK 777
Query: 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139
AL + G E+ +VR NN D S +G++ + LP TL
Sbjct: 778 ALQAFQKFGNKLKEIEEKLVRRNN-------DPSLQGNRLGPVQLPYTL 819
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 40 FSSAGNIEEICGCKRLKSLPSSICKLKS 67
F + G IEE+ GC RL P + +L++
Sbjct: 235 FRNTGEIEELAGCDRLTISPELLAQLEA 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,609,744
Number of Sequences: 62578
Number of extensions: 345456
Number of successful extensions: 691
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 19
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)