Query 039239
Match_columns 323
No_of_seqs 411 out of 3302
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 3.2E-21 6.8E-26 206.6 15.6 75 197-278 955-1030(1153)
2 PLN00113 leucine-rich repeat r 99.7 7.8E-17 1.7E-21 170.7 7.6 167 2-181 98-270 (968)
3 PLN00113 leucine-rich repeat r 99.7 8E-17 1.7E-21 170.6 7.0 118 2-122 123-244 (968)
4 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.4E-22 137.5 -2.7 155 2-170 38-197 (264)
5 PLN03210 Resistant to P. syrin 99.4 2.6E-13 5.6E-18 146.0 9.0 168 2-181 639-835 (1153)
6 KOG0444 Cytoskeletal regulator 99.4 6.2E-14 1.3E-18 135.6 -0.8 142 2-157 155-301 (1255)
7 KOG0444 Cytoskeletal regulator 99.3 1.6E-13 3.4E-18 132.8 0.1 147 1-161 107-284 (1255)
8 KOG0617 Ras suppressor protein 99.3 2.2E-13 4.9E-18 112.9 -0.3 154 11-181 24-183 (264)
9 KOG0472 Leucine-rich repeat pr 99.2 2.4E-13 5.3E-18 125.6 -7.6 112 11-126 104-217 (565)
10 KOG0472 Leucine-rich repeat pr 99.2 3.7E-13 8.1E-18 124.4 -7.1 153 2-161 50-222 (565)
11 KOG4194 Membrane glycoprotein 99.1 3.6E-11 7.8E-16 115.9 4.8 168 1-181 153-351 (873)
12 KOG4194 Membrane glycoprotein 99.1 6.8E-11 1.5E-15 114.0 4.2 167 2-181 83-255 (873)
13 PRK15370 E3 ubiquitin-protein 99.1 2.1E-10 4.7E-15 117.4 6.6 111 2-126 204-315 (754)
14 PRK15387 E3 ubiquitin-protein 99.0 7.7E-10 1.7E-14 113.2 10.2 14 148-161 383-398 (788)
15 PRK15370 E3 ubiquitin-protein 99.0 5.7E-10 1.2E-14 114.3 6.8 112 1-126 224-336 (754)
16 PLN03150 hypothetical protein; 99.0 1.5E-09 3.2E-14 110.0 8.0 66 59-126 435-501 (623)
17 KOG0618 Serine/threonine phosp 98.9 3E-10 6.4E-15 114.6 0.5 152 4-170 294-483 (1081)
18 KOG0532 Leucine-rich repeat (L 98.8 1.6E-10 3.6E-15 111.1 -3.3 143 4-161 105-250 (722)
19 PF14580 LRR_9: Leucine-rich r 98.8 5.6E-09 1.2E-13 88.6 5.9 117 10-161 9-129 (175)
20 KOG4237 Extracellular matrix p 98.8 2.9E-10 6.4E-15 105.2 -2.1 199 2-204 72-340 (498)
21 PRK15387 E3 ubiquitin-protein 98.8 8.5E-09 1.8E-13 105.6 7.2 130 2-161 287-438 (788)
22 KOG0532 Leucine-rich repeat (L 98.8 4.3E-10 9.4E-15 108.3 -3.6 160 2-181 80-244 (722)
23 KOG0618 Serine/threonine phosp 98.7 2.2E-09 4.9E-14 108.4 -0.7 121 3-157 365-486 (1081)
24 PF14580 LRR_9: Leucine-rich r 98.6 3.8E-08 8.2E-13 83.6 3.1 118 2-154 24-147 (175)
25 PLN03150 hypothetical protein; 98.5 1.1E-07 2.4E-12 96.4 6.2 106 67-184 419-528 (623)
26 KOG1259 Nischarin, modulator o 98.5 2.7E-08 5.8E-13 89.6 -0.0 85 62-157 325-409 (490)
27 cd00116 LRR_RI Leucine-rich re 98.5 3.2E-08 6.8E-13 91.5 0.4 147 2-157 56-231 (319)
28 KOG1259 Nischarin, modulator o 98.4 4.9E-08 1.1E-12 87.9 0.2 113 53-181 294-409 (490)
29 cd00116 LRR_RI Leucine-rich re 98.4 1.6E-08 3.4E-13 93.5 -3.1 148 2-158 3-177 (319)
30 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.3E-12 64.1 3.1 55 67-122 2-57 (61)
31 COG4886 Leucine-rich repeat (L 98.3 2.3E-07 5E-12 88.8 2.9 146 2-161 121-271 (394)
32 COG4886 Leucine-rich repeat (L 98.3 2.4E-07 5.2E-12 88.7 2.9 129 17-158 112-244 (394)
33 PF13855 LRR_8: Leucine rich r 98.3 4.5E-07 9.7E-12 63.2 2.8 58 90-157 1-59 (61)
34 KOG4237 Extracellular matrix p 98.3 1.5E-07 3.3E-12 87.5 -0.1 112 53-176 77-193 (498)
35 PRK15386 type III secretion pr 98.2 3.1E-06 6.7E-11 80.6 6.6 81 19-108 50-133 (426)
36 KOG1859 Leucine-rich repeat pr 98.1 1.6E-07 3.5E-12 93.2 -3.0 155 14-184 102-292 (1096)
37 PRK15386 type III secretion pr 98.1 6E-06 1.3E-10 78.7 6.4 78 1-88 56-136 (426)
38 KOG4658 Apoptotic ATPase [Sign 98.1 2.7E-06 5.8E-11 89.0 4.3 93 55-157 559-652 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.0 3E-06 6.5E-11 88.6 1.9 153 3-157 551-727 (889)
40 KOG3207 Beta-tubulin folding c 98.0 2.3E-06 5.1E-11 80.6 0.9 151 2-161 151-317 (505)
41 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 52.0 2.9 40 66-106 1-40 (44)
42 KOG3207 Beta-tubulin folding c 97.5 9E-06 1.9E-10 76.8 -2.2 131 16-157 141-281 (505)
43 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.2E-09 47.7 2.7 35 90-126 1-35 (44)
44 KOG0531 Protein phosphatase 1, 97.3 5.1E-05 1.1E-09 73.4 0.3 82 62-157 114-196 (414)
45 KOG1859 Leucine-rich repeat pr 97.3 6.7E-06 1.5E-10 82.0 -6.4 117 10-161 176-295 (1096)
46 KOG0531 Protein phosphatase 1, 97.3 9.5E-05 2.1E-09 71.5 1.1 93 56-162 85-179 (414)
47 KOG2120 SCF ubiquitin ligase, 97.2 1.3E-05 2.9E-10 72.4 -5.1 156 17-181 206-373 (419)
48 KOG4579 Leucine-rich repeat (L 97.1 4.6E-05 1E-09 61.6 -2.0 88 62-161 49-139 (177)
49 KOG4579 Leucine-rich repeat (L 97.1 3.6E-05 7.9E-10 62.2 -2.6 99 2-126 32-134 (177)
50 KOG3665 ZYG-1-like serine/thre 96.8 0.00039 8.6E-09 71.2 0.6 56 65-122 147-203 (699)
51 KOG1909 Ran GTPase-activating 96.5 0.00036 7.7E-09 64.4 -1.6 96 61-158 87-225 (382)
52 KOG2739 Leucine-rich acidic nu 96.2 0.0024 5.2E-08 56.9 2.0 60 65-126 64-127 (260)
53 KOG1644 U2-associated snRNP A' 96.1 0.0081 1.8E-07 51.8 4.5 82 66-157 42-123 (233)
54 KOG3665 ZYG-1-like serine/thre 96.0 0.0041 8.9E-08 63.9 2.7 88 63-157 170-260 (699)
55 PF00560 LRR_1: Leucine Rich R 95.7 0.0033 7.1E-08 34.2 0.2 18 92-109 2-19 (22)
56 KOG1909 Ran GTPase-activating 95.6 0.0015 3.2E-08 60.5 -2.2 87 64-157 155-251 (382)
57 KOG2120 SCF ubiquitin ligase, 95.6 0.00025 5.4E-09 64.4 -7.1 91 61-157 229-323 (419)
58 KOG1644 U2-associated snRNP A' 95.4 0.022 4.8E-07 49.2 4.2 63 62-126 60-124 (233)
59 KOG2123 Uncharacterized conser 95.0 0.0013 2.8E-08 59.3 -4.3 81 65-157 18-98 (388)
60 KOG2739 Leucine-rich acidic nu 95.0 0.019 4E-07 51.3 2.9 83 64-157 41-126 (260)
61 PF00560 LRR_1: Leucine Rich R 94.8 0.0084 1.8E-07 32.5 0.2 22 67-89 1-22 (22)
62 KOG2982 Uncharacterized conser 94.8 0.01 2.2E-07 54.2 0.6 68 57-126 88-157 (418)
63 PF13504 LRR_7: Leucine rich r 93.7 0.033 7.2E-07 28.2 1.0 16 91-106 2-17 (17)
64 smart00370 LRR Leucine-rich re 93.1 0.071 1.5E-06 29.9 1.8 22 89-110 1-22 (26)
65 smart00369 LRR_TYP Leucine-ric 93.1 0.071 1.5E-06 29.9 1.8 22 89-110 1-22 (26)
66 KOG2123 Uncharacterized conser 92.9 0.0085 1.8E-07 54.2 -3.4 60 63-126 38-99 (388)
67 KOG2982 Uncharacterized conser 89.3 0.072 1.6E-06 48.8 -1.2 81 65-157 70-156 (418)
68 PF13306 LRR_5: Leucine rich r 89.3 1.6 3.4E-05 34.2 6.7 58 62-122 31-89 (129)
69 COG5238 RNA1 Ran GTPase-activa 86.9 1.1 2.4E-05 40.7 4.8 93 2-105 35-135 (388)
70 COG5238 RNA1 Ran GTPase-activa 86.0 0.17 3.6E-06 45.9 -0.9 90 17-126 26-131 (388)
71 KOG0473 Leucine-rich repeat pr 84.7 0.068 1.5E-06 47.3 -3.8 84 62-157 38-121 (326)
72 KOG1947 Leucine rich repeat pr 78.6 0.4 8.7E-06 46.5 -1.5 16 20-35 187-202 (482)
73 KOG1947 Leucine rich repeat pr 78.4 1 2.2E-05 43.6 1.3 100 50-157 196-305 (482)
74 PF13306 LRR_5: Leucine rich r 76.7 5.3 0.00011 31.1 4.8 84 61-157 7-91 (129)
75 smart00364 LRR_BAC Leucine-ric 75.8 1.6 3.4E-05 24.7 1.0 17 91-107 3-19 (26)
76 smart00365 LRR_SD22 Leucine-ri 70.1 2.9 6.3E-05 23.6 1.2 16 90-105 2-17 (26)
77 KOG3864 Uncharacterized conser 68.3 0.64 1.4E-05 40.3 -2.5 11 147-157 151-161 (221)
78 KOG0473 Leucine-rich repeat pr 65.5 0.13 2.9E-06 45.5 -7.3 87 12-122 32-119 (326)
79 PF13516 LRR_6: Leucine Rich r 63.2 3.6 7.8E-05 22.3 0.7 14 90-103 2-15 (24)
80 smart00367 LRR_CC Leucine-rich 60.3 6.5 0.00014 21.8 1.5 16 20-35 1-16 (26)
81 KOG3864 Uncharacterized conser 57.5 1.2 2.7E-05 38.5 -2.7 32 90-122 151-184 (221)
82 smart00368 LRR_RI Leucine rich 50.3 10 0.00022 21.5 1.2 14 90-103 2-15 (28)
83 KOG4341 F-box protein containi 49.8 7.1 0.00015 37.7 0.7 130 19-157 292-436 (483)
84 KOG4341 F-box protein containi 34.8 5.1 0.00011 38.6 -2.6 83 67-157 139-226 (483)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.2e-21 Score=206.62 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=56.7
Q ss_pred ceeEeCCCCCCCcceeccccCCeeE-EeecCCCCCCCCCCCCCceeeEEEEEEEeecCccccccccccccCCcccCCCCC
Q 039239 197 CGYVIFPGNEIPKWFKFQSVGSSSS-ITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPN 275 (323)
Q Consensus 197 ~~~~~~pg~~iP~wf~~~~~g~sl~-i~~~lp~~~~~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~n 275 (323)
+..+++||.++|+||+|+..|.+++ |+ +|+ .|+ ...+.||++|+|+++.....-.+....+..+++++..+|
T Consensus 955 ~~~~~l~g~evp~~f~hr~~g~sl~~i~--l~~---~~~--~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~ 1027 (1153)
T PLN03210 955 FKQLILSGEEVPSYFTHRTTGASLTNIP--LLH---ISP--CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGN 1027 (1153)
T ss_pred ceEEECCCccCchhccCCcccceeeeec--cCC---ccc--CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCC
Confidence 4467999999999999999999998 99 888 898 788999999999987765432222223445556655555
Q ss_pred chh
Q 039239 276 LVH 278 (323)
Q Consensus 276 ~~~ 278 (323)
.++
T Consensus 1028 ~~~ 1030 (1153)
T PLN03210 1028 HFD 1030 (1153)
T ss_pred ccc
Confidence 444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.67 E-value=7.8e-17 Score=170.72 Aligned_cols=167 Identities=23% Similarity=0.293 Sum_probs=86.9
Q ss_pred EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCccCCC-CcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKRLPE-FSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~~p~-~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|+|++|++.+.+|..+. .+++|++|+|++|...+.+|. ....+...++++|...+.+|..++++++|++|++++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 34444444444443332 344444444444444444432 1112222233444333455556666666666666666666
Q ss_pred CCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 80 QKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
+.+|..++++++|++|++++|.+ +.+|..++.++ +|+.|+++ +|. +.. .+|..++++++|++|++++|
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~-~n~-------l~~-~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLG-YNN-------LSG-EIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECc-CCc-------cCC-cCChhHhcCCCCCEEECcCce
Confidence 66666666666666666666665 34566666666 66666666 544 221 12456677777777777777
Q ss_pred c--ccCccccccccchhhhhhhhhhh
Q 039239 158 F--KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 l--~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+| ..+..+ ++|+.+++..|
T Consensus 248 l~~~~p-~~l~~l--~~L~~L~L~~n 270 (968)
T PLN00113 248 LTGPIP-SSLGNL--KNLQYLFLYQN 270 (968)
T ss_pred eccccC-hhHhCC--CCCCEEECcCC
Confidence 5 344 344444 45555554444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=8e-17 Score=170.65 Aligned_cols=118 Identities=25% Similarity=0.371 Sum_probs=55.6
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|+|++|.+.+.+|. +.+++|++|+|++|...+.+|..++.+. ..++++|...+.+|..++++++|++|++++|.+
T Consensus 123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred EECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 45555555444443 2345555555555544444444333322 222334333344444455555555555555544
Q ss_pred CCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEcc
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~ 122 (323)
.+.+|..++++++|++|++++|.+. .+|..++.++ +|++|+++
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~ 244 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLV 244 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECc
Confidence 4445555555555555555555442 3444444444 45555554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-17 Score=137.46 Aligned_cols=155 Identities=29% Similarity=0.394 Sum_probs=131.5
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|.|++|+ +..+|+.|..+.+|+.|++.+ +.++++|..++.+. ++.+. +.+.+..+|.+|+.++.|++||+.+|+..
T Consensus 38 LtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 38 LTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence 5688988 667787899999999999998 56778887766655 44443 56778889999999999999999998876
Q ss_pred C-CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 80 Q-KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 80 ~-~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
+ .+|..|..|+.|+.|++++|.+..+|..+++++ +|+.|.+. .|. +.++ |.+++.++.|++|++.+|
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt-~lqil~lr-dnd-------ll~l--pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT-NLQILSLR-DND-------LLSL--PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc-ceeEEeec-cCc-------hhhC--cHHHHHHHHHHHHhcccce
Confidence 4 688889999999999999999999999999999 99999998 777 6655 899999999999999999
Q ss_pred c-ccCccccccccc
Q 039239 158 F-KLDRKEVRGIFE 170 (323)
Q Consensus 158 l-~lP~~~L~~L~~ 170 (323)
+ .+| +.+..++.
T Consensus 185 l~vlp-pel~~l~l 197 (264)
T KOG0617|consen 185 LTVLP-PELANLDL 197 (264)
T ss_pred eeecC-hhhhhhhh
Confidence 8 777 56666655
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=2.6e-13 Score=146.00 Aligned_cols=168 Identities=30% Similarity=0.457 Sum_probs=81.1
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|+|++|..++.+|. ++.+++|+.|+|++|..+..+|..++.+. ..++++|++++.+|..+ ++++|+.|++++|..
T Consensus 639 L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 639 IDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred EECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 34444444444443 44444555555555544444444433322 22334455555555443 445555555555544
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC--------------CCcceec------
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM--------------GLLLPIT------ 138 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--------------~~L~~l~------ 138 (323)
++.+|+. ..+|++|++++|.++++|..+ .++ +|+.|.+. ++...... ..|+.++
T Consensus 717 L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~-~L~~L~l~-~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 717 LKSFPDI---STNISWLDLDETAIEEFPSNL-RLE-NLDELILC-EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred ccccccc---cCCcCeeecCCCccccccccc-ccc-cccccccc-ccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 4444432 234555666666666666543 233 44444444 32110000 0012221
Q ss_pred ---CccccccCCCCCeecCCCC--c-ccCccccccccchhhhhhhhhhh
Q 039239 139 ---LSIDGLHMTDLRHFDLSGN--F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 139 ---L~~~l~~l~~L~~L~Ls~N--l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+|..++++++|+.|++++| + .+|... .+ .+|+.+++..+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L--~sL~~L~Ls~c 835 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI--NL--ESLESLDLSGC 835 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC--Cc--cccCEEECCCC
Confidence 3566788889999999988 6 777321 12 44555555444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.36 E-value=6.2e-14 Score=135.58 Aligned_cols=142 Identities=26% Similarity=0.368 Sum_probs=67.3
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCC----CccCCCCcCCcchhhhcC-ccccccccccccCCCCCCEEEeeCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSK----LKRLPEFSSAGNIEEICG-CKRLKSLPSSICKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~----l~~~p~~~~~l~l~~L~~-~~~l~~lP~~i~~L~~L~~L~Ls~n 76 (323)
||||+|+ +..+|+.+.+|..|+.|+|++|.. +..+|...+ +..+.+++ ...+..+|.++..|.+|..+|+|.|
T Consensus 155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 4555554 455555555555555555555432 122232110 00111111 1112234555555555555555543
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
+ +..+|+.+.++.+|+.|+|++|.|+++--.++... +|+.|+++ .|. |+.+ |.++.++++|+.|++.+
T Consensus 233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~-~lEtLNlS-rNQ-------Lt~L--P~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE-NLETLNLS-RNQ-------LTVL--PDAVCKLTKLTKLYANN 300 (1255)
T ss_pred C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHh-hhhhhccc-cch-------hccc--hHHHhhhHHHHHHHhcc
Confidence 2 34455555555555555555555555444444444 55555555 444 4444 55555666666666666
Q ss_pred C
Q 039239 157 N 157 (323)
Q Consensus 157 N 157 (323)
|
T Consensus 301 N 301 (1255)
T KOG0444|consen 301 N 301 (1255)
T ss_pred C
Confidence 6
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=1.6e-13 Score=132.82 Aligned_cols=147 Identities=23% Similarity=0.362 Sum_probs=108.3
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcc---hhhhcCccccccccccccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n 76 (323)
+||||+|+ +++.|..+.+.+++-.|+||+ +.+..+|... -++. +++|++ +.++.+|+.+.+|..|++|+|++|
T Consensus 107 ~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 107 ILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCC
Confidence 36778877 677787777778888888887 4566666532 2222 344554 678899998888888888888887
Q ss_pred CCC-------------------------CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC
Q 039239 77 SNI-------------------------QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 77 ~~~-------------------------~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
.+. ..+|.++..|.+|..+|++.|.+..+|+.+..+. +|+.|+++ +|+
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~LrrLNLS-~N~----- 256 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRRLNLS-GNK----- 256 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhheeccC-cCc-----
Confidence 643 2345566677778888888888888888888888 88888888 787
Q ss_pred CCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
++.++ ...+...+|+.|++|.| + .+|
T Consensus 257 --iteL~--~~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 257 --ITELN--MTEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred --eeeee--ccHHHHhhhhhhccccchhccch
Confidence 77773 44567788999999999 8 888
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-13 Score=112.95 Aligned_cols=154 Identities=23% Similarity=0.370 Sum_probs=119.1
Q ss_pred CcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239 11 KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN 88 (323)
Q Consensus 11 ~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~ 88 (323)
..+|. +.++++.+.|.|++|. +..+|+.+..+. ++.+. .++.++++|.+|+.+++|+.|+++-| .+..+|.+|+.
T Consensus 24 ~~~~g-Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPG-LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred hhccc-ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCC
Confidence 35665 5569999999999954 555555444433 44443 34778999999999999999999885 46788999999
Q ss_pred Ccccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccc
Q 039239 89 LEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKE 164 (323)
Q Consensus 89 l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~ 164 (323)
++.|+.||+.+|++. .+|..++.+. .|+.|.++ +|. .+.+ |.+++++++|+.|.+..| + ++| ..
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~-tlralyl~-dnd-------fe~l--p~dvg~lt~lqil~lrdndll~lp-ke 168 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMT-TLRALYLG-DND-------FEIL--PPDVGKLTNLQILSLRDNDLLSLP-KE 168 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHH-HHHHHHhc-CCC-------cccC--ChhhhhhcceeEEeeccCchhhCc-HH
Confidence 999999999999984 6899999998 99999998 887 5666 889999999999999999 7 998 44
Q ss_pred cccccchhhhhhhhhhh
Q 039239 165 VRGIFEDALQDIQLMAA 181 (323)
Q Consensus 165 L~~L~~~sL~~l~l~~n 181 (323)
+..| +.|+.+.+..|
T Consensus 169 ig~l--t~lrelhiqgn 183 (264)
T KOG0617|consen 169 IGDL--TRLRELHIQGN 183 (264)
T ss_pred HHHH--HHHHHHhcccc
Confidence 4444 55555544443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=2.4e-13 Score=125.59 Aligned_cols=112 Identities=27% Similarity=0.369 Sum_probs=63.6
Q ss_pred CcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239 11 KSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN 88 (323)
Q Consensus 11 ~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~ 88 (323)
..+|..++.+.+|+.|+.++|. ..++|+.+ ....++++. ..+++.++|++++.+.+|..|++.+|.. ..+|+..-+
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~ 181 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA 181 (565)
T ss_pred hhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHH
Confidence 3344444444445555544432 22222222 222244443 4556667777777777777777777543 334444444
Q ss_pred CcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
|+.|++||...|.++.+|+.++.+. +|..|++. .|+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~-~L~~LyL~-~Nk 217 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLE-SLELLYLR-RNK 217 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchh-hhHHHHhh-hcc
Confidence 7777777777777777777777777 77777776 666
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=3.7e-13 Score=124.38 Aligned_cols=153 Identities=25% Similarity=0.288 Sum_probs=76.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|++++|.+....++ +.++..|.+|++.+| .+.+.|..++.+. +..+. ..+++.++|+.++.+.+|..|+.++|. .
T Consensus 50 lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~ 126 (565)
T KOG0472|consen 50 LILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-L 126 (565)
T ss_pred hhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-e
Confidence 34555553333333 556666666666663 3333444333322 22221 234455555555555555555555543 3
Q ss_pred CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCC-CCC---------------cceecCcccc
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQ-MGL---------------LLPITLSIDG 143 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~-~~~---------------L~~l~L~~~l 143 (323)
.++|++++.+..|+.++..+|++.++|.+++.+. ++..+++. +|+.... +.. ++.+ |+++
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~-~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl--P~~l 202 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS-KLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLLETL--PPEL 202 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHHHHH-HHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhhhcC--Chhh
Confidence 3444555555555555555555555555555555 55555555 4441000 000 4444 5666
Q ss_pred ccCCCCCeecCCCC-c-ccC
Q 039239 144 LHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 144 ~~l~~L~~L~Ls~N-l-~lP 161 (323)
+.+.+|..||+..| + .+|
T Consensus 203 g~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cchhhhHHHHhhhcccccCC
Confidence 66666666666666 4 444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.14 E-value=3.6e-11 Score=115.94 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=95.6
Q ss_pred CEEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-Ccccccccccc-ccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSS-ICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~-i~~L~~L~~L~Ls~n 76 (323)
.|||+.|.+. .+| +++..-.++++|+|++|....---..+..++ +..+. ..+.+.++|.- |.+|++|+.|+|..|
T Consensus 153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 3688887743 344 4466567888888888654432222222222 33332 23456666653 444777777777766
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCC-------------------------hhHHhcccccceeEccCCCCCCCCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVP-------------------------SSVVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-------------------------~~i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
.+-..---.|..+.+|+.|.+..|.|..+- .+++.++ +|+.|+++ .|.
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS-~Na----- 304 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLS-YNA----- 304 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhccc-hhh-----
Confidence 543221123444444444444444444332 2344444 44444444 444
Q ss_pred CCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+..+. ++.+...++|++|+|+.| + .+|+.++..| .+|+.+.+..|
T Consensus 305 --I~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L--~~Le~LnLs~N 351 (873)
T KOG4194|consen 305 --IQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVL--SQLEELNLSHN 351 (873)
T ss_pred --hheee-cchhhhcccceeEeccccccccCChhHHHHH--HHhhhhccccc
Confidence 34333 245677889999999999 8 8888777777 67777766665
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=6.8e-11 Score=114.05 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=104.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-Ccccccccc-ccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLP-SSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~ 78 (323)
||+++|++...-+..|.++++|+.++|.. +.+..+|.+..... ++.|. ..+.+.++- ..+.-++.|+.|||+.|.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 78888886666667788888888888888 56677776654433 22221 123344442 2355566777777777654
Q ss_pred CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
...--.++..-.++++|+|++|.|+.+- ..+..+. +|..|.|+ .|. ++.+. +..|+++++|+.|+|..|
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLs-rNr-------ittLp-~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLS-RNR-------ITTLP-QRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecc-cCc-------ccccC-HHHhhhcchhhhhhcccc
Confidence 4433344555566777777777776653 4566666 77777777 666 66662 145667777888888777
Q ss_pred -c-ccCccccccccchhhhhhhhhhh
Q 039239 158 -F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 -l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+....++.| +||+.+++..|
T Consensus 232 ~irive~ltFqgL--~Sl~nlklqrN 255 (873)
T KOG4194|consen 232 RIRIVEGLTFQGL--PSLQNLKLQRN 255 (873)
T ss_pred ceeeehhhhhcCc--hhhhhhhhhhc
Confidence 5 4433344445 66777666555
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=2.1e-10 Score=117.41 Aligned_cols=111 Identities=24% Similarity=0.298 Sum_probs=57.1
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
|+|++|+ +..+|..+. .+|++|++++|. +..+|..+ ..+...++++| .+..+|..+. ++|+.|++++|++.
T Consensus 204 L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~- 275 (754)
T PRK15370 204 LILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN-RITELPERLP--SALQSLDLFHNKIS- 275 (754)
T ss_pred EEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccC-
Confidence 5566655 345555443 466666666654 33455422 12223333443 3455665543 45666777665443
Q ss_pred CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+|..+. .+|+.|++++|.++.+|..+. + +|+.|+++ +|.
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~-sL~~L~Ls-~N~ 315 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIRTLPAHLP--S-GITHLNVQ-SNS 315 (754)
T ss_pred ccccccC--CCCcEEECCCCccccCcccch--h-hHHHHHhc-CCc
Confidence 4565443 356666666666666654332 1 45555555 443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.04 E-value=7.7e-10 Score=113.15 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=8.6
Q ss_pred CCCeecCCCC-c-ccC
Q 039239 148 DLRHFDLSGN-F-KLD 161 (323)
Q Consensus 148 ~L~~L~Ls~N-l-~lP 161 (323)
+|+.|++++| + .+|
T Consensus 383 ~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 383 GLKELIVSGNRLTSLP 398 (788)
T ss_pred ccceEEecCCcccCCC
Confidence 5666666666 5 555
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.99 E-value=5.7e-10 Score=114.31 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-CcchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
.|++++|+ +..+|..+. .+|+.|+|++|... .+|..+. .+..++++ ++.+..+|..+. ++|+.|++++|++.
T Consensus 224 ~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls-~N~L~~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 224 TLYANSNQ-LTSIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLF-HNKISCLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred EEECCCCc-cccCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECc-CCccCccccccC--CCCcEEECCCCccc
Confidence 37888887 557887554 57899999997644 6775432 22233343 567778887664 57889999888654
Q ss_pred CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+|..+. .+|+.|++++|.+..+|..+. + +|+.|+++ +|.
T Consensus 297 -~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~-sL~~L~Ls-~N~ 336 (754)
T PRK15370 297 -TLPAHLP--SGITHLNVQSNSLTALPETLP--P-GLKTLEAG-ENA 336 (754)
T ss_pred -cCcccch--hhHHHHHhcCCccccCCcccc--c-cceecccc-CCc
Confidence 4665442 356666666666666665432 2 56666666 555
No 16
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=1.5e-09 Score=110.01 Aligned_cols=66 Identities=29% Similarity=0.419 Sum_probs=33.9
Q ss_pred cccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCC
Q 039239 59 PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 59 P~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
|..++++++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+ +.+|..++.++ +|+.|+++ +|.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-~L~~L~Ls-~N~ 501 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLN-GNS 501 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-CCCEEECc-CCc
Confidence 33444455555555555555555555555555555555555555 24455555555 55555555 443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=3e-10 Score=114.59 Aligned_cols=152 Identities=28% Similarity=0.422 Sum_probs=109.9
Q ss_pred ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhc-Ccccccccc--------------------
Q 039239 4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEIC-GCKRLKSLP-------------------- 59 (323)
Q Consensus 4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~-~~~~l~~lP-------------------- 59 (323)
..+|. +..+|...+.+++|+.|+|.. +.++.+|+.+-... +..+. .++.+..+|
T Consensus 294 ~~~ne-l~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNE-LEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhh-hhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 34454 667888788899999999999 56777776322111 11110 122222222
Q ss_pred -----ccccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239 60 -----SSICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL 133 (323)
Q Consensus 60 -----~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~ 133 (323)
+-+.+..+|++|+|++|. ++.+|. .+.++..|++|+++||+++.+|..+..+. .|++|... +|.
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ah-sN~------- 441 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAH-SNQ------- 441 (1081)
T ss_pred cccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhc-CCc-------
Confidence 235677889999999975 667775 47788899999999999999999999998 99999888 777
Q ss_pred cceecCccccccCCCCCeecCCCC-c---ccC---c-cccccccc
Q 039239 134 LLPITLSIDGLHMTDLRHFDLSGN-F---KLD---R-KEVRGIFE 170 (323)
Q Consensus 134 L~~l~L~~~l~~l~~L~~L~Ls~N-l---~lP---~-~~L~~L~~ 170 (323)
+..+ | ++.+++.|+.+|++.| + .+| | ++|++||+
T Consensus 442 l~~f--P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 442 LLSF--P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred eeec--h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence 6666 5 8899999999999999 6 454 3 66777766
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.6e-10 Score=111.12 Aligned_cols=143 Identities=27% Similarity=0.412 Sum_probs=113.7
Q ss_pred ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhh-cCccccccccccccCCCCCCEEEeeCCCCCCCC
Q 039239 4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKL 82 (323)
Q Consensus 4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L-~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l 82 (323)
|.+|. ...+|..+.++..|++|||+. +.+..+|.-+..+.+.-+ -.+++++.+|+.++.+..|..||.+.|. +..+
T Consensus 105 Ly~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~sl 181 (722)
T KOG0532|consen 105 LYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSL 181 (722)
T ss_pred HHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhc
Confidence 34444 567788888888888888888 456677776666665443 3567888899989888889999988875 5567
Q ss_pred CcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-cc
Q 039239 83 PHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KL 160 (323)
Q Consensus 83 p~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~l 160 (323)
|..++.+.+|+.|.+..|.+..+|..+..|+ |..|+++ .|+ +..+ |.+|.+|+.|++|-|.+| | +=
T Consensus 182 psql~~l~slr~l~vrRn~l~~lp~El~~Lp--Li~lDfS-cNk-------is~i--Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLEDLPEELCSLP--LIRLDFS-CNK-------ISYL--PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc--eeeeecc-cCc-------eeec--chhhhhhhhheeeeeccCCCCCC
Confidence 7888888899999999999988998888774 8889998 787 7777 888999999999999999 8 44
Q ss_pred C
Q 039239 161 D 161 (323)
Q Consensus 161 P 161 (323)
|
T Consensus 250 P 250 (722)
T KOG0532|consen 250 P 250 (722)
T ss_pred h
Confidence 4
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=5.6e-09 Score=88.65 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccccc-CCCCCCEEEeeCCCCCCCCCcccCC
Q 039239 10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSIC-KLKSLKVLNLDGCSNIQKLPHELGN 88 (323)
Q Consensus 10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~-~L~~L~~L~Ls~n~~~~~lp~~l~~ 88 (323)
...+|. +.+..+++.|+|+||. +..+. .++ .+.+|+.|++++|.+.. + +.+..
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n~----------------------I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~ 62 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGNQ----------------------ISTIE-NLGATLDKLEVLDLSNNQITK-L-EGLPG 62 (175)
T ss_dssp ---------------------------------------------------S--TT-TT--EEE-TTS--S----TT---
T ss_pred cccccc-cccccccccccccccc----------------------ccccc-chhhhhcCCCEEECCCCCCcc-c-cCccC
Confidence 445565 4557788999999953 22222 233 57899999999987654 4 46888
Q ss_pred CcccceeeccccccccCChhHH-hcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 89 LEALNSLYAKGIATTEVPSSVV-RLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~-~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
+++|+.|++++|.|++++..+. .++ +|++|+++ +|+ +..++-=..++.+++|+.|++.+| + .-+
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp-~L~~L~L~-~N~-------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLP-NLQELYLS-NNK-------ISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-T-T--EEE-T-TS----------SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred hhhhhhcccCCCCCCccccchHHhCC-cCCEEECc-CCc-------CCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 9999999999999999977664 688 99999999 888 544422245678999999999999 6 444
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=2.9e-10 Score=105.21 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=138.0
Q ss_pred EEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239 2 LDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSS-ICKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n 76 (323)
++|..|+ ++.|| ..|+.+++|+.|||++|+....-|+.+..+. +.. +.+.++++.+|+. |++|.+|+.|.+.-|
T Consensus 72 irLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 5677887 45555 6689999999999999887777777655444 433 3466889999985 789999999999998
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCC----------------CCCC------
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDK----------------QMGL------ 133 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~----------------~~~~------ 133 (323)
.+.-...+.|..|++|..|.+.+|.+..++. ++..+. .++.+++. .|.+.- ..+.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-~i~tlhlA-~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-AIKTLHLA-QNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-ccchHhhh-cCccccccccchhhhHHhhchhhcccceecch
Confidence 8888888889999999999999999998887 777777 88888887 554211 0000
Q ss_pred -------------------ccee-------cC-----c-cccccCCCCCeecCCCC-c-ccCc------cccccccc--h
Q 039239 134 -------------------LLPI-------TL-----S-IDGLHMTDLRHFDLSGN-F-KLDR------KEVRGIFE--D 171 (323)
Q Consensus 134 -------------------L~~l-------~L-----~-~~l~~l~~L~~L~Ls~N-l-~lP~------~~L~~L~~--~ 171 (323)
++.+ +. | ..|+.+++|+.|+|++| + .|.+ ..+++|.+ +
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 1111 00 1 35789999999999999 8 7764 33444443 5
Q ss_pred hhhhhhhhhhhhHHHHhhcccccccceeEeCCC
Q 039239 172 ALQDIQLMAAARWKQVREEGYFLEKCGYVIFPG 204 (323)
Q Consensus 172 sL~~l~l~~n~~~~~l~~~~~~~~~~~~~~~pg 204 (323)
+++.++-..-+.++.+...++..+.+ ..+-||
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~~ 340 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAPG 340 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCee-EEEecc
Confidence 55555422223344444455556665 444444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=8.5e-09 Score=105.60 Aligned_cols=130 Identities=25% Similarity=0.253 Sum_probs=63.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--------------------hhhcCcccccccccc
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--------------------EEICGCKRLKSLPSS 61 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--------------------~~L~~~~~l~~lP~~ 61 (323)
|++++|+ +..+|.. +++|+.|+|++|.. ..+|.....+.. +++++ +.+..+|..
T Consensus 287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~l 360 (788)
T PRK15387 287 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTL 360 (788)
T ss_pred EECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCCC
Confidence 4566665 4455542 46677777777543 334443222221 11222 333444432
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|... + +|+.|+++ +|. +..+ |.
T Consensus 361 ---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~---s-~L~~LdLS-~N~-------LssI--P~ 419 (788)
T PRK15387 361 ---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLP---S-ELKELMVS-GNR-------LTSL--PM 419 (788)
T ss_pred ---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcc---c-CCCEEEcc-CCc-------CCCC--Cc
Confidence 123444555554433 34432 235666777777776666432 3 56666776 665 4433 32
Q ss_pred ccccCCCCCeecCCCC-c-ccC
Q 039239 142 DGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
. ..+|+.|++++| + .||
T Consensus 420 l---~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred c---hhhhhhhhhccCcccccC
Confidence 1 234555566665 5 555
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=4.3e-10 Score=108.29 Aligned_cols=160 Identities=28% Similarity=0.380 Sum_probs=122.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
.||+.|+ ..++|..+..+..|+.+.|.. +.+..+|+.+..+. +++|+. +.+..+|..++.|+ |+.|.+++| +
T Consensus 80 aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 80 ADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-K 154 (722)
T ss_pred hhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-c
Confidence 4677776 566787777788888888877 45677777666655 445554 56778888888776 899999885 5
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
++.+|+.++.+..|..||.+.|.+..+|+.++.+. +|+.|.+. .|. +..+ |.++.. -.|..||+++|
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~-slr~l~vr-Rn~-------l~~l--p~El~~-LpLi~lDfScNk 222 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT-SLRDLNVR-RNH-------LEDL--PEELCS-LPLIRLDFSCNK 222 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHH-HHHHHHHh-hhh-------hhhC--CHHHhC-CceeeeecccCc
Confidence 88999999988999999999999999999999999 99999998 777 5555 777763 35889999999
Q ss_pred c-ccCccccccccchhhhhhhhhhh
Q 039239 158 F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .|| -.++.+ ..|+.+.+-.|
T Consensus 223 is~iP-v~fr~m--~~Lq~l~LenN 244 (722)
T KOG0532|consen 223 ISYLP-VDFRKM--RHLQVLQLENN 244 (722)
T ss_pred eeecc-hhhhhh--hhheeeeeccC
Confidence 8 898 333344 45555554444
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=108.39 Aligned_cols=121 Identities=33% Similarity=0.427 Sum_probs=91.9
Q ss_pred EecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccc-ccCCCCCCEEEeeCCCCCCC
Q 039239 3 DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS-ICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 3 ~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~ 81 (323)
.+.+|.+....-+-+.++++|+.|+|++ +.+.++|++ +.++..|++|+|||| .+..
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsy----------------------NrL~~fpas~~~kle~LeeL~LSGN-kL~~ 421 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSY----------------------NRLNSFPASKLRKLEELEELNLSGN-KLTT 421 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecc----------------------cccccCCHHHHhchHHhHHHhcccc-hhhh
Confidence 3455554443333355567777777776 345566654 668889999999996 5788
Q ss_pred CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+|+.+.++..|++|...+|.+..+| .+..++ .|+.+|++ .|. |..+.++..... ++|++||++||
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~-qL~~lDlS-~N~-------L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP-QLKVLDLS-CNN-------LSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCceeech-hhhhcC-cceEEecc-cch-------hhhhhhhhhCCC-cccceeeccCC
Confidence 8999999999999999999999999 788899 99999999 777 777766643322 78999999999
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=3.8e-08 Score=83.57 Aligned_cols=118 Identities=22% Similarity=0.281 Sum_probs=46.6
Q ss_pred EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
|+|++|++ ..+.. ++ .+.+|+.|+|++|. ++.++ .+..++.|++|++++|.+..
T Consensus 24 L~L~~n~I-~~Ie~-L~~~l~~L~~L~Ls~N~----------------------I~~l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 24 LNLRGNQI-STIEN-LGATLDKLEVLDLSNNQ----------------------ITKLE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -------------S---TT-TT--EEE-TTS------------------------S--T-T----TT--EEE--SS---S
T ss_pred cccccccc-ccccc-hhhhhcCCCEEECCCCC----------------------Ccccc-CccChhhhhhcccCCCCCCc
Confidence 78888874 44443 65 58899999999963 33333 35568999999999987654
Q ss_pred CCCccc-CCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecC--ccccccCCCCCeecC
Q 039239 81 KLPHEL-GNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL--SIDGLHMTDLRHFDL 154 (323)
Q Consensus 81 ~lp~~l-~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L--~~~l~~l~~L~~L~L 154 (323)
+.+.+ ..+++|++|++++|+|..+- ..+..++ +|+.|++. +|. +....- ..-+..+++|+.||-
T Consensus 79 -i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~-~NP-------v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 -ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLE-GNP-------VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-T-T-G-------GGGSTTHHHHHHHH-TT-SEETT
T ss_pred -cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC-Ccceeecc-CCc-------ccchhhHHHHHHHHcChhheeCC
Confidence 54444 46899999999999986543 4667888 99999999 887 332200 012356677777663
No 25
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.1e-07 Score=96.42 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCCEEEeeCCCCCCCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcccccc
Q 039239 67 SLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLH 145 (323)
Q Consensus 67 ~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~ 145 (323)
.++.|+|++|.+.+.+|..++++++|+.|++++|.+ +.+|..++.++ +|+.|+++ +|. +.. .+|..+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~-~L~~LdLs-~N~-------lsg-~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLS-YNS-------FNG-SIPESLGQ 488 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEECC-CCC-------CCC-CCchHHhc
Confidence 378899999999999999999999999999999999 58999999999 99999999 887 442 23778899
Q ss_pred CCCCCeecCCCC-c--ccCccccccccchhhhhhhhhhhhhH
Q 039239 146 MTDLRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAAARW 184 (323)
Q Consensus 146 l~~L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n~~~ 184 (323)
+++|+.|+|++| + .+| ..+..+. ..+..+++..|..+
T Consensus 489 L~~L~~L~Ls~N~l~g~iP-~~l~~~~-~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVP-AALGGRL-LHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCCcccccCC-hHHhhcc-ccCceEEecCCccc
Confidence 999999999999 7 787 3333221 22334445555433
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2.7e-08 Score=89.62 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=38.8
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
+..|++|+.|||++|.+ .++-..-..+.+.+.|.+++|.|..+ +.++.+- +|..|++. +|. ++.++--.
T Consensus 325 La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLY-SLvnLDl~-~N~-------Ie~ldeV~ 393 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLY-SLVNLDLS-SNQ-------IEELDEVN 393 (490)
T ss_pred hhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhh-hheecccc-ccc-------hhhHHHhc
Confidence 33444555555555432 22222222344445555555555443 3344444 45555555 444 33333223
Q ss_pred ccccCCCCCeecCCCC
Q 039239 142 DGLHMTDLRHFDLSGN 157 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N 157 (323)
.+++++.|+++.|.+|
T Consensus 394 ~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGN 409 (490)
T ss_pred ccccccHHHHHhhcCC
Confidence 4555555555555555
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=3.2e-08 Score=91.49 Aligned_cols=147 Identities=17% Similarity=0.048 Sum_probs=79.8
Q ss_pred EEecCCCCC------CcCCcccCCCCCCCEEeeeCCCCCccCCCCcCC------cchhhhcCcccc----ccccccccCC
Q 039239 2 LDLSDCKSL------KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSA------GNIEEICGCKRL----KSLPSSICKL 65 (323)
Q Consensus 2 L~Ls~n~~l------~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~------l~l~~L~~~~~l----~~lP~~i~~L 65 (323)
|+++++... ..++..+..+++|+.|++++|......+..+.. +...++++|..- ..+...+..+
T Consensus 56 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~ 135 (319)
T cd00116 56 LCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135 (319)
T ss_pred EeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC
Confidence 456665533 233455677889999999998766443322111 222223333221 1233344455
Q ss_pred -CCCCEEEeeCCCCCC----CCCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239 66 -KSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLL 135 (323)
Q Consensus 66 -~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~ 135 (323)
++|+.|++++|.+.+ .++..+..+++|++|++++|.++ .++..+...+ +|+.|+++ +|. +.
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~-~n~-------i~ 206 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLN-NNG-------LT 206 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEecc-CCc-------cC
Confidence 667777777776553 22334555566777777777664 2334445555 67777776 555 22
Q ss_pred eec---CccccccCCCCCeecCCCC
Q 039239 136 PIT---LSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 136 ~l~---L~~~l~~l~~L~~L~Ls~N 157 (323)
... +...+..+++|++|++++|
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCC
Confidence 211 1233455666777777776
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=4.9e-08 Score=87.94 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=84.0
Q ss_pred cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCC
Q 039239 53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMG 132 (323)
Q Consensus 53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~ 132 (323)
+.+.++-.++.-++.++.|++++|.+... .++..+.+|+.||+++|.+.++-.+-..+. +++.|.++ +|.
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~La-~N~------ 363 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLKLA-QNK------ 363 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhc-CEeeeehh-hhh------
Confidence 45666777777778888999998876654 457888889999999998887776667777 88888888 887
Q ss_pred CcceecCccccccCCCCCeecCCCC-c-ccCc-cccccccchhhhhhhhhhh
Q 039239 133 LLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 133 ~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~~l~l~~n 181 (323)
++.+ +.++++-+|..||+++| + .+.. ..+..| +.|+.+.+..|
T Consensus 364 -iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L--PCLE~l~L~~N 409 (490)
T KOG1259|consen 364 -IETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL--PCLETLRLTGN 409 (490)
T ss_pred -Hhhh---hhhHhhhhheeccccccchhhHHHhcccccc--cHHHHHhhcCC
Confidence 6666 45678889999999999 5 4431 233334 67777776666
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=1.6e-08 Score=93.50 Aligned_cols=148 Identities=20% Similarity=0.105 Sum_probs=90.1
Q ss_pred EEecCCCCC-CcCCcccCCCCCCCEEeeeCCCCCcc----CCCCcCCc---chhhhcCc------cccccccccccCCCC
Q 039239 2 LDLSDCKSL-KSLPAEISNLESLKKLNLSGCSKLKR----LPEFSSAG---NIEEICGC------KRLKSLPSSICKLKS 67 (323)
Q Consensus 2 L~Ls~n~~l-~~lP~~i~~L~~L~~L~Ls~c~~l~~----~p~~~~~l---~l~~L~~~------~~l~~lP~~i~~L~~ 67 (323)
|+|+.+... ...+..+..+.+|+.|++++|..... ++...... ....++++ ..+..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666654 34444455577788888888765321 22222111 11122221 223345566777888
Q ss_pred CCEEEeeCCCCCCCCCcccCCCcc---cceeeccccccc-----cCChhHHhc-ccccceeEccCCCCCCCCCCCccee-
Q 039239 68 LKVLNLDGCSNIQKLPHELGNLEA---LNSLYAKGIATT-----EVPSSVVRL-NNKLYELSSDRSRRGDKQMGLLLPI- 137 (323)
Q Consensus 68 L~~L~Ls~n~~~~~lp~~l~~l~~---L~~L~L~~n~i~-----~lP~~i~~l-~~~L~~L~l~~~n~~~~~~~~L~~l- 137 (323)
|+.|++++|.+.+..+..+..+.+ |++|++++|.++ .+...+..+ + +|+.|+++ +|. ++.-
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~-~n~-------l~~~~ 153 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLG-RNR-------LEGAS 153 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcC-CCc-------CCchH
Confidence 999999988877666665555555 899999888875 234455666 6 88999998 776 3311
Q ss_pred --cCccccccCCCCCeecCCCC-c
Q 039239 138 --TLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 138 --~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
.+...+..+++|++|++++| +
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCC
Confidence 11234556677888888888 5
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.9e-07 Score=64.13 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEcc
Q 039239 67 SLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSD 122 (323)
Q Consensus 67 ~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~ 122 (323)
+|++|++++|++...-+..|..+++|++|++++|.++.+| ..+..++ +|+.|+++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLS 57 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEET
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCc
Confidence 3444555554333322234444555555555555554443 2444444 55555554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.3e-07 Score=88.84 Aligned_cols=146 Identities=29% Similarity=0.412 Sum_probs=88.8
Q ss_pred EEecCCCCCCcCCcccCCCC-CCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLE-SLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~-~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++.+|. ...+|+..+.+. +|+.|++++| .+..+|...+.+. +..|. ..+.+..+|...+.++.|+.|++++|.
T Consensus 121 L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~- 197 (394)
T COG4886 121 LDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK- 197 (394)
T ss_pred EecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-
Confidence 4555555 555666566553 7888888774 4444443333222 33332 335566777766677777888887754
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
+..+|..++.+..|++|.+++|.+.+++..+..+. ++..+.+. ++. +..+ +..++.+++++.|++++|
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~-~l~~l~l~-~n~-------~~~~--~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK-NLSGLELS-NNK-------LEDL--PESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCcceecchhhhhcc-cccccccC-Cce-------eeec--cchhccccccceecccccc
Confidence 55666665566667777777776666666777777 77777666 555 3332 344556666667777766
Q ss_pred c-ccC
Q 039239 158 F-KLD 161 (323)
Q Consensus 158 l-~lP 161 (323)
+ .++
T Consensus 267 i~~i~ 271 (394)
T COG4886 267 ISSIS 271 (394)
T ss_pred ccccc
Confidence 5 554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.4e-07 Score=88.71 Aligned_cols=129 Identities=26% Similarity=0.427 Sum_probs=89.2
Q ss_pred cCCCCCCCEEeeeCCCCCccCCCCcCCc--chhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccc
Q 039239 17 ISNLESLKKLNLSGCSKLKRLPEFSSAG--NIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l--~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~ 93 (323)
+..++.++.|++.+ ....++|...+.. ++..+. ..+.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 55567788888887 4455566555554 344443 346677777778888888888888875 445555555778888
Q ss_pred eeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239 94 SLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 94 ~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
.|++++|.+..+|..+.... .|+++.++ +|. +... +..+.+++++..+.+.+| +
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~-~L~~l~~~-~N~-------~~~~--~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLS-ALEELDLS-NNS-------IIEL--LSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred heeccCCccccCchhhhhhh-hhhhhhhc-CCc-------ceec--chhhhhcccccccccCCcee
Confidence 88888888888888776665 68888888 664 1222 355677777788888777 5
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=4.5e-07 Score=63.17 Aligned_cols=58 Identities=31% Similarity=0.327 Sum_probs=42.4
Q ss_pred cccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 90 EALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 90 ~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
++|++|++++|.+..+|. .+..++ +|+.|+++ +|. ++.+. +..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~-~N~-------l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLP-NLETLDLS-NNN-------LTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGT-TESEEEET-SSS-------ESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCC-CCCEeEcc-CCc-------cCccC-HHHHcCCCCCCEEeCcCC
Confidence 357778888888877764 556677 88888888 777 66663 356777888888888877
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.28 E-value=1.5e-07 Score=87.52 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=86.6
Q ss_pred cccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCC
Q 039239 53 KRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDK 129 (323)
Q Consensus 53 ~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~ 129 (323)
+.++.||+ +|+.+++|+.|||+.|++...-|+.|..+.+|..|-+.+ |+|+.+|. .++.+. +++.|.+. .|+
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-slqrLllN-an~--- 151 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-SLQRLLLN-ANH--- 151 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-HHHHHhcC-hhh---
Confidence 56778877 578899999999999999999999999999988887766 88999986 677787 89988887 666
Q ss_pred CCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhh
Q 039239 130 QMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDI 176 (323)
Q Consensus 130 ~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l 176 (323)
+..+. ...+..+++|..|.+.+| + .|+..+++.+ .+++++
T Consensus 152 ----i~Cir-~~al~dL~~l~lLslyDn~~q~i~~~tf~~l--~~i~tl 193 (498)
T KOG4237|consen 152 ----INCIR-QDALRDLPSLSLLSLYDNKIQSICKGTFQGL--AAIKTL 193 (498)
T ss_pred ----hcchh-HHHHHHhhhcchhcccchhhhhhccccccch--hccchH
Confidence 44441 356777888888888888 7 7775455555 334444
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=3.1e-06 Score=80.61 Aligned_cols=81 Identities=30% Similarity=0.511 Sum_probs=49.0
Q ss_pred CCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecc
Q 039239 19 NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAK 98 (323)
Q Consensus 19 ~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~ 98 (323)
.+.+++.|++++| .+..+|.....++-+.+.+|..++.+|..+ ..+|+.|++++|..+..+|.. |+.|++.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeC
Confidence 4567777777776 566666544444444556677777777655 256777777777666666654 4445555
Q ss_pred ccc---cccCChh
Q 039239 99 GIA---TTEVPSS 108 (323)
Q Consensus 99 ~n~---i~~lP~~ 108 (323)
++. ++.+|.+
T Consensus 121 ~n~~~~L~~LPss 133 (426)
T PRK15386 121 GSATDSIKNVPNG 133 (426)
T ss_pred CCCCcccccCcch
Confidence 544 3444543
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.6e-07 Score=93.17 Aligned_cols=155 Identities=22% Similarity=0.212 Sum_probs=107.6
Q ss_pred CcccCCCCCCCEEeeeCCCCCccC---------CCCcCCcc--------------------h---hhhc-Cccccccccc
Q 039239 14 PAEISNLESLKKLNLSGCSKLKRL---------PEFSSAGN--------------------I---EEIC-GCKRLKSLPS 60 (323)
Q Consensus 14 P~~i~~L~~L~~L~Ls~c~~l~~~---------p~~~~~l~--------------------l---~~L~-~~~~l~~lP~ 60 (323)
|-.|..+.+|+.|.|.+|...... -..+..-. + ...+ .|+.+..+-.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 445677899999999999654311 00110000 1 1121 4566777777
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS 140 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~ 140 (323)
++.-++.|+.|||++|++... +.+..+.+|++||+++|.+..+|.--..-. +|..|.++ +|. ++.+
T Consensus 182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr-nN~-------l~tL--- 247 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR-NNA-------LTTL--- 247 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec-ccH-------HHhh---
Confidence 787888999999999876655 378899999999999999998886322223 68999999 887 7777
Q ss_pred cccccCCCCCeecCCCC-c-ccCccccccccc-hhhhhhhhhhhhhH
Q 039239 141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFE-DALQDIQLMAAARW 184 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~-~sL~~l~l~~n~~~ 184 (323)
..+.++.+|+.||++.| + .-- .|.-|-. .+|..+.+-+|+.+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCccc
Confidence 46789999999999999 5 321 3333322 66677777777544
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=6e-06 Score=78.69 Aligned_cols=78 Identities=27% Similarity=0.631 Sum_probs=53.2
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCC--C
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC--S 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n--~ 77 (323)
.|++++| .++.+|. + ..+|+.|.+++|..+..+|+.+ ..++-+.+.+|..+..+|++ |+.|++.++ .
T Consensus 56 ~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~ 125 (426)
T PRK15386 56 RLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES------VRSLEIKGSATD 125 (426)
T ss_pred EEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc------cceEEeCCCCCc
Confidence 3889999 4788883 2 3579999999999998888644 23334456688888888875 455555543 3
Q ss_pred CCCCCCcccCC
Q 039239 78 NIQKLPHELGN 88 (323)
Q Consensus 78 ~~~~lp~~l~~ 88 (323)
.++.+|.++..
T Consensus 126 ~L~~LPssLk~ 136 (426)
T PRK15386 126 SIKNVPNGLTS 136 (426)
T ss_pred ccccCcchHhh
Confidence 35667765443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=2.7e-06 Score=88.98 Aligned_cols=93 Identities=29% Similarity=0.372 Sum_probs=73.9
Q ss_pred ccccccc-ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239 55 LKSLPSS-ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL 133 (323)
Q Consensus 55 l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~ 133 (323)
+..++.. |..++.|++|||++|...+.+|..++.+-+|++|+++++.+.++|.++.++. +|.+|++. .+..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk-~L~~Lnl~-~~~~------ 630 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK-KLIYLNLE-VTGR------ 630 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHH-hhheeccc-cccc------
Confidence 4445544 5679999999999999999999999999999999999999999999999999 99999998 5542
Q ss_pred cceecCccccccCCCCCeecCCCC
Q 039239 134 LLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 134 L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+... +.....+++|++|.+..-
T Consensus 631 l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 631 LESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccc--cchhhhcccccEEEeecc
Confidence 2222 333445777777776543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.96 E-value=3e-06 Score=88.62 Aligned_cols=153 Identities=23% Similarity=0.203 Sum_probs=99.8
Q ss_pred EecCCCC-CCcCCc-ccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239 3 DLSDCKS-LKSLPA-EISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 3 ~Ls~n~~-l~~lP~-~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
-+..|.. +..++. .|..++.|++|||++|...+++|+.++.+- ++.|. ..+.+..+|.++++|+.|.+||+..+..
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 3444442 444554 366799999999999999999998877543 44332 3467889999999999999999999888
Q ss_pred CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCCCCCCCCC--------------ccee---c
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRRGDKQMGL--------------LLPI---T 138 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~--------------L~~l---~ 138 (323)
+..+|..+..|.+|++|.+...... ..-..+.++. .|+.+... .........+ +... .
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le-~L~~ls~~-~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE-HLENLSIT-ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred cccccchhhhcccccEEEeeccccccchhhHHhhhccc-chhhheee-cchhHhHhhhhhhHHHHHHhHhhhhcccccce
Confidence 8888877777999999988665421 1223445555 56555554 2221110000 0000 1
Q ss_pred CccccccCCCCCeecCCCC
Q 039239 139 LSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 139 L~~~l~~l~~L~~L~Ls~N 157 (323)
+...+..+.+|+.|.+.+|
T Consensus 709 ~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDC 727 (889)
T ss_pred eecccccccCcceEEEEcC
Confidence 1245567788888888887
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.3e-06 Score=80.61 Aligned_cols=151 Identities=21% Similarity=0.144 Sum_probs=89.2
Q ss_pred EEecCCCCCC--cCCcccCCCCCCCEEeeeCCCCCccCCC----CcCCcchhhhcCcccc-ccccccccCCCCCCEEEee
Q 039239 2 LDLSDCKSLK--SLPAEISNLESLKKLNLSGCSKLKRLPE----FSSAGNIEEICGCKRL-KSLPSSICKLKSLKVLNLD 74 (323)
Q Consensus 2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~c~~l~~~p~----~~~~l~l~~L~~~~~l-~~lP~~i~~L~~L~~L~Ls 74 (323)
|||++|-+.. .+-.....|++|+.|+|+.|...--... .+..++-+.+++|..- ..+-.....+++|+.|+|.
T Consensus 151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE 230 (505)
T ss_pred ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence 5666664322 2223346789999999998654322211 1111112223344321 2233334456778888888
Q ss_pred CCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCccc-----cccCC
Q 039239 75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-----GLHMT 147 (323)
Q Consensus 75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-----l~~l~ 147 (323)
+|......-....-+..|+.|+|++|++-..+ ..++.++ .|..|+++ .+. +.++..|+. ...++
T Consensus 231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls-~tg-------i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 231 ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLS-STG-------IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cccccceecchhhhhhHHhhccccCCccccccccccccccc-chhhhhcc-ccC-------cchhcCCCccchhhhcccc
Confidence 87544433344455667888888888876555 4667777 78888777 666 555555533 35677
Q ss_pred CCCeecCCCC-c-ccC
Q 039239 148 DLRHFDLSGN-F-KLD 161 (323)
Q Consensus 148 ~L~~L~Ls~N-l-~lP 161 (323)
+|+.|+++.| + .++
T Consensus 302 kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWR 317 (505)
T ss_pred cceeeecccCcccccc
Confidence 8888888888 6 555
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.3e-05 Score=51.97 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC
Q 039239 66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP 106 (323)
Q Consensus 66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP 106 (323)
++|++|++++|++. .+|..+++|++|+.|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35777777776554 56666777777777777777776554
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=9e-06 Score=76.76 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=59.8
Q ss_pred ccCCCCCCCEEeeeCCCCCccCC--CCcCCcc-hhh--hcCccccccccc-cccCCCCCCEEEeeCCCCCCC-CCcccCC
Q 039239 16 EISNLESLKKLNLSGCSKLKRLP--EFSSAGN-IEE--ICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQK-LPHELGN 88 (323)
Q Consensus 16 ~i~~L~~L~~L~Ls~c~~l~~~p--~~~~~l~-l~~--L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~ 88 (323)
-...+++++.|||++|-...-.| .+...+. ++. ++.+...--..+ .-..+++|+.|.|+.|.+... +-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 35579999999999964322111 0111111 111 111110000000 011345566666666655421 1112334
Q ss_pred Ccccceeeccccc-cc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 89 LEALNSLYAKGIA-TT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 89 l~~L~~L~L~~n~-i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+++|+.|++.+|. +. ..+..+ +. .|++|+++ +|. +...+.-...+.++.|+.|+++.|
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i--~~-~L~~LdLs-~N~-------li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKI--LQ-TLQELDLS-NNN-------LIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred CCcHHHhhhhcccccceecchhhh--hh-HHhhcccc-CCc-------ccccccccccccccchhhhhcccc
Confidence 4556666666663 22 222222 22 56666666 554 333322234566777777777777
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.0001 Score=47.74 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.8
Q ss_pred cccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 90 EALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 90 ~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
++|++|++++|+|+.+|..+.+++ +|+.|+++ +|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~-~L~~L~l~-~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLP-NLETLNLS-NNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCT-TSSEEEET-SSC
T ss_pred CcceEEEccCCCCcccCchHhCCC-CCCEEEec-CCC
Confidence 468888888888888888888888 88888888 777
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=5.1e-05 Score=73.37 Aligned_cols=82 Identities=26% Similarity=0.332 Sum_probs=44.7
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
+..+.+|++|++++|.+... ..+..+..|+.|++.+|.|..+.. +..+. .|+.++++ +|. +..+ ..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~-~L~~l~l~-~n~-------i~~i--e~ 179 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-LESLK-SLKLLDLS-YNR-------IVDI--EN 179 (414)
T ss_pred hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC-Cccch-hhhcccCC-cch-------hhhh--hh
Confidence 45566666666666544333 235556666666666666655432 22344 66666666 555 2332 11
Q ss_pred c-cccCCCCCeecCCCC
Q 039239 142 D-GLHMTDLRHFDLSGN 157 (323)
Q Consensus 142 ~-l~~l~~L~~L~Ls~N 157 (323)
. ...+.+++.+++.+|
T Consensus 180 ~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 180 DELSELISLEELDLGGN 196 (414)
T ss_pred hhhhhccchHHHhccCC
Confidence 1 355566666666666
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=6.7e-06 Score=81.98 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=74.4
Q ss_pred CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCc-ccCC
Q 039239 10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPH-ELGN 88 (323)
Q Consensus 10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~ 88 (323)
+..+..++.-++.|+.|||++|. +..+- .+..|+.|++|||++|. +..+|. +...
T Consensus 176 L~~mD~SLqll~ale~LnLshNk----------------------~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~g 231 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNK----------------------FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVG 231 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhh----------------------hhhhH-HHHhcccccccccccch-hccccccchhh
Confidence 44455556656777777777743 22222 35567788888888875 445553 2233
Q ss_pred CcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
+. |+.|.+.+|.++++ ..+.++. +|+.|+++ .|- |....==.-++.+..|+.|+|.|| + .=|
T Consensus 232 c~-L~~L~lrnN~l~tL-~gie~Lk-sL~~LDls-yNl-------l~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTTL-RGIENLK-SLYGLDLS-YNL-------LSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hh-heeeeecccHHHhh-hhHHhhh-hhhccchh-Hhh-------hhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 33 88888888888776 5678888 88888888 554 222200023456778888888888 6 444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=9.5e-05 Score=71.52 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=73.5
Q ss_pred ccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239 56 KSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLL 135 (323)
Q Consensus 56 ~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~ 135 (323)
+.+-..++.+++|..|++.+|.+.+. ...+..+.+|++|++++|.|+.+ ..+..++ .|+.|+++ +|. +.
T Consensus 85 ~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~-~L~~L~l~-~N~-------i~ 153 (414)
T KOG0531|consen 85 AKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-EGLSTLT-LLKELNLS-GNL-------IS 153 (414)
T ss_pred hhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-cchhhcc-chhhheec-cCc-------ch
Confidence 33333467889999999999875544 33378899999999999999988 4577788 89999999 898 56
Q ss_pred eecCccccccCCCCCeecCCCC-c-ccCc
Q 039239 136 PITLSIDGLHMTDLRHFDLSGN-F-KLDR 162 (323)
Q Consensus 136 ~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~ 162 (323)
.+ ..+..+++|+.+++++| + .++.
T Consensus 154 ~~---~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 154 DI---SGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hc---cCCccchhhhcccCCcchhhhhhh
Confidence 55 45566899999999999 7 7764
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=1.3e-05 Score=72.44 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred cCCCCCCCEEeeeCCCCCccCCCCc-CCcc--hhhhcCccccccccc--cccCCCCCCEEEeeCCCCCCCCC-cccCCC-
Q 039239 17 ISNLESLKKLNLSGCSKLKRLPEFS-SAGN--IEEICGCKRLKSLPS--SICKLKSLKVLNLDGCSNIQKLP-HELGNL- 89 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~--l~~L~~~~~l~~lP~--~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l- 89 (323)
++.+.+|+.|.|.|+.....+-..+ .+-. -.+++.|+.+++..- -+.+++.|..|+|+.|-.....- ..+.+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3445566666666643322221111 1111 123344555443322 24567788888888876554321 112222
Q ss_pred cccceeeccccc--c--ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCCcccCcccc
Q 039239 90 EALNSLYAKGIA--T--TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEV 165 (323)
Q Consensus 90 ~~L~~L~L~~n~--i--~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~Nl~lP~~~L 165 (323)
++|+.|+++|+. + ..+..-..+++ +|.+|+++ +|.. ++. ++-..|.+++.|++|.++.|..|||..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLS-D~v~------l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLS-DSVM------LKN-DCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccc-cccc------cCc-hHHHHHHhcchheeeehhhhcCCChHHe
Confidence 357778888764 2 23333345666 88888888 6552 222 2234567888899999999853333333
Q ss_pred ccccc-hhhhhhhhhhh
Q 039239 166 RGIFE-DALQDIQLMAA 181 (323)
Q Consensus 166 ~~L~~-~sL~~l~l~~n 181 (323)
-++.- ++|.++++|..
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 33333 55555555443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=4.6e-05 Score=61.59 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=63.3
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCC-cccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNL-EALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS 140 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l-~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~ 140 (323)
+.+...|+..+|++|. +..+|+.|... +.++.|++.+|.|.++|..+..++ .|+.|+++ .|. +... |
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~-aLr~lNl~-~N~-------l~~~--p 116 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP-ALRSLNLR-FNP-------LNAE--P 116 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH-Hhhhcccc-cCc-------cccc--h
Confidence 4445566777888864 56667665543 467888888888888888888888 88888888 776 4443 4
Q ss_pred cccccCCCCCeecCCCC-c-ccC
Q 039239 141 IDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
.-+..+.++-.||..+| . .||
T Consensus 117 ~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred HHHHHHHhHHHhcCCCCccccCc
Confidence 55556777888888888 6 776
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=3.6e-05 Score=62.20 Aligned_cols=99 Identities=30% Similarity=0.393 Sum_probs=61.3
Q ss_pred EEecCCCCCCcCCcc---cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccC-CCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAE---ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICK-LKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~---i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~-L~~L~~L~Ls~n~ 77 (323)
+||++|. +..+++. +.....|+..+|++| .+..+|+.+.. .+.++.|++++|.
T Consensus 32 ldLssc~-lm~i~davy~l~~~~el~~i~ls~N----------------------~fk~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 32 LDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN----------------------GFKKFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred cccccch-hhHHHHHHHHHhCCceEEEEecccc----------------------hhhhCCHHHhhccchhhhhhcchhh
Confidence 5666666 4444433 333445555567763 34445554432 2356777777754
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+..+|+.+..++.|+.|++..|.+...|.-+..+. ++..|+.. +|.
T Consensus 89 -isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~-~l~~Lds~-~na 134 (177)
T KOG4579|consen 89 -ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI-KLDMLDSP-ENA 134 (177)
T ss_pred -hhhchHHHhhhHHhhhcccccCccccchHHHHHHH-hHHHhcCC-CCc
Confidence 55677777777777777777777777777777766 77777766 555
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.00039 Score=71.21 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCCCEEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239 65 LKSLKVLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 65 L~~L~~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
|++|+.|.+++=.+. ..+-....++++|..||+++++++.+ .+++++. +|+.|.+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk-nLq~L~mr 203 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK-NLQVLSMR 203 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc-cHHHHhcc
Confidence 566666666653221 11223344566666667777666665 5666666 66666665
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.53 E-value=0.00036 Score=64.45 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=62.1
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcc----cCCCcccceeeccccccccCChh--------------HHhcccccceeEcc
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHE----LGNLEALNSLYAKGIATTEVPSS--------------VVRLNNKLYELSSD 122 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~----l~~l~~L~~L~L~~n~i~~lP~~--------------i~~l~~~L~~L~l~ 122 (323)
.+-..++|++||||+|-+--..+.. +.++..|++|+|.+|.++..-.. +..-+ +|+++...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~-~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKP-KLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCc-ceEEEEee
Confidence 3445678999999998776555543 56788999999999998643211 12223 67888777
Q ss_pred CCCCCCCCC-----------CCcceecCc-------------cccccCCCCCeecCCCC-c
Q 039239 123 RSRRGDKQM-----------GLLLPITLS-------------IDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 123 ~~n~~~~~~-----------~~L~~l~L~-------------~~l~~l~~L~~L~Ls~N-l 158 (323)
+|...... ..++.+.++ ..+.++++|+.|||..| |
T Consensus 166 -rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 166 -RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred -ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 66522111 013333332 34578999999999999 6
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.0024 Score=56.87 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCCEEEeeCC--CCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCC
Q 039239 65 LKSLKVLNLDGC--SNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 65 L~~L~~L~Ls~n--~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~ 126 (323)
|++|+.|.++.| ...+.++.....+++|++|++++|+|..+- ..+..+. +|..|++. +|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~-nL~~Ldl~-n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE-NLKSLDLF-NCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc-chhhhhcc-cCC
Confidence 556666666666 445555555555566666666666654210 1233344 45555555 444
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.12 E-value=0.0081 Score=51.80 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=52.7
Q ss_pred CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcccccc
Q 039239 66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLH 145 (323)
Q Consensus 66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~ 145 (323)
.+...+||++|.+ ..+ +.|..+..|.+|.+++|.|+.|-+.+..+-.+|..|.+. +|. +..+.==.-+..
T Consensus 42 d~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNs-------i~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNS-------IQELGDLDPLAS 111 (233)
T ss_pred cccceecccccch-hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec-Ccc-------hhhhhhcchhcc
Confidence 4566777777653 333 356677788888888888877755555444368888887 666 444310023456
Q ss_pred CCCCCeecCCCC
Q 039239 146 MTDLRHFDLSGN 157 (323)
Q Consensus 146 l~~L~~L~Ls~N 157 (323)
+++|++|.+-+|
T Consensus 112 ~p~L~~Ltll~N 123 (233)
T KOG1644|consen 112 CPKLEYLTLLGN 123 (233)
T ss_pred CCccceeeecCC
Confidence 777888877777
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.00 E-value=0.0041 Score=63.86 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=62.7
Q ss_pred cCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCC-cceecC
Q 039239 63 CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGL-LLPITL 139 (323)
Q Consensus 63 ~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~-L~~l~L 139 (323)
.++++|..||+|++++.-. .+++++++|+.|.+.+-.+..-. ..+++|+ +|+.||+| ..+....+.. ...+
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~-~L~vLDIS-~~~~~~~~~ii~qYl-- 243 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK-KLRVLDIS-RDKNNDDTKIIEQYL-- 243 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc-CCCeeecc-ccccccchHHHHHHH--
Confidence 4678999999999875544 78999999999999888775432 4788999 99999999 4442110000 1111
Q ss_pred ccccccCCCCCeecCCCC
Q 039239 140 SIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N 157 (323)
+.-..++.|+.||.|+.
T Consensus 244 -ec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 244 -ECGMVLPELRFLDCSGT 260 (699)
T ss_pred -HhcccCccccEEecCCc
Confidence 23356889999999987
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0033 Score=34.19 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=9.7
Q ss_pred cceeeccccccccCChhH
Q 039239 92 LNSLYAKGIATTEVPSSV 109 (323)
Q Consensus 92 L~~L~L~~n~i~~lP~~i 109 (323)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.60 E-value=0.0015 Score=60.47 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=50.9
Q ss_pred CCCCCCEEEeeCCCCCCCCC-----cccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239 64 KLKSLKVLNLDGCSNIQKLP-----HELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGL 133 (323)
Q Consensus 64 ~L~~L~~L~Ls~n~~~~~lp-----~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~ 133 (323)
.-+.|+++....|.+ +..+ ..+...+.|+.+.+..|.|. -+-..+..++ .|+.|++. .|....
T Consensus 155 ~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~-DNtft~---- 227 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLR-DNTFTL---- 227 (382)
T ss_pred CCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecc-cchhhh----
Confidence 345677777777643 3322 34556677777777777763 1234566777 78888887 665210
Q ss_pred cceecCccccccCCCCCeecCCCC
Q 039239 134 LLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 134 L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
--...+...+..+++|++|++++|
T Consensus 228 egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHHhcccchheeeccccc
Confidence 011112234456667777777777
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.00025 Score=64.38 Aligned_cols=91 Identities=26% Similarity=0.250 Sum_probs=64.2
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcce
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLP 136 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~ 136 (323)
.|.+-..|+.|+|+.|+-.....- -+.+++.|..|+++-|.+. .+--.+.+...+|+.|+++ ++......
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls-G~rrnl~~----- 302 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS-GYRRNLQK----- 302 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh-hhHhhhhh-----
Confidence 466778999999999976655432 3678899999999999873 3444566666689999999 76532111
Q ss_pred ecCccccccCCCCCeecCCCC
Q 039239 137 ITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 137 l~L~~~l~~l~~L~~L~Ls~N 157 (323)
-++..--..+++|.+|||++|
T Consensus 303 sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 303 SHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hHHHHHHHhCCceeeeccccc
Confidence 111222367899999999999
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.36 E-value=0.022 Score=49.18 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=48.3
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCC
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~ 126 (323)
+..++.|.+|.+++|.++..-|.--.-+++|..|.+.+|.|.++- .-+..++ +|+.|.+- +|.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p-~L~~Ltll-~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP-KLEYLTLL-GNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC-ccceeeec-CCc
Confidence 556889999999998887776655445677999999999986542 2456777 88888888 776
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0013 Score=59.33 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccc
Q 039239 65 LKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGL 144 (323)
Q Consensus 65 L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~ 144 (323)
+.+.+.|+..||.+... .....|+.|+.|.|+-|+|+++ ..+..+. +|++|.|. .|. +..++-=..+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCt-rLkElYLR-kN~-------I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCT-RLKELYLR-KNC-------IESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHH-HHHHHHHH-hcc-------cccHHHHHHHh
Confidence 45667788888875433 3456889999999999999887 4577888 99999998 776 44442113457
Q ss_pred cCCCCCeecCCCC
Q 039239 145 HMTDLRHFDLSGN 157 (323)
Q Consensus 145 ~l~~L~~L~Ls~N 157 (323)
++++|+.|.|..|
T Consensus 86 nlpsLr~LWL~EN 98 (388)
T KOG2123|consen 86 NLPSLRTLWLDEN 98 (388)
T ss_pred cCchhhhHhhccC
Confidence 8899999999988
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.99 E-value=0.019 Score=51.28 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=57.3
Q ss_pred CCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc--cc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239 64 KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI--AT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS 140 (323)
Q Consensus 64 ~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n--~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~ 140 (323)
.+..|+.|.+.++..+.. ..+-.|++|+.|.++.| .+ ..++.....++ +|++++++ +|+ ++.+.=-
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls-~Nk-------i~~lstl 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLS-GNK-------IKDLSTL 109 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeec-CCc-------ccccccc
Confidence 345666666766654432 24557889999999999 44 35666666677 99999999 888 3333111
Q ss_pred cccccCCCCCeecCCCC
Q 039239 141 IDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~N 157 (323)
..+..+.+|..||+.+|
T Consensus 110 ~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNC 126 (260)
T ss_pred chhhhhcchhhhhcccC
Confidence 34567888999999988
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.0084 Score=32.53 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.2
Q ss_pred CCCEEEeeCCCCCCCCCcccCCC
Q 039239 67 SLKVLNLDGCSNIQKLPHELGNL 89 (323)
Q Consensus 67 ~L~~L~Ls~n~~~~~lp~~l~~l 89 (323)
+|++|++++|++. .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999766 888877654
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.01 Score=54.20 Aligned_cols=68 Identities=25% Similarity=0.219 Sum_probs=49.2
Q ss_pred cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccc--ccCChhHHhcccccceeEccCCCC
Q 039239 57 SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT--TEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 57 ~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i--~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
++-.-+.+|+.|+.|+|+.|++...+-..-..+.+|+.|-+.|+.+ +..-+.+..+| ++++|+++ .|.
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS-~N~ 157 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMS-DNS 157 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhc-cch
Confidence 3444466889999999998876544422113567889999998886 46667788888 88999888 665
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.033 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=5.8
Q ss_pred ccceeeccccccccCC
Q 039239 91 ALNSLYAKGIATTEVP 106 (323)
Q Consensus 91 ~L~~L~L~~n~i~~lP 106 (323)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544443
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.09 E-value=0.071 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.1
Q ss_pred CcccceeeccccccccCChhHH
Q 039239 89 LEALNSLYAKGIATTEVPSSVV 110 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~ 110 (323)
+++|++|++++|.|..+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578888888888888887654
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.09 E-value=0.071 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.1
Q ss_pred CcccceeeccccccccCChhHH
Q 039239 89 LEALNSLYAKGIATTEVPSSVV 110 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~ 110 (323)
+++|++|++++|.|..+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578888888888888887654
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.0085 Score=54.17 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=48.3
Q ss_pred cCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh--hHHhcccccceeEccCCCC
Q 039239 63 CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS--SVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 63 ~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~--~i~~l~~~L~~L~l~~~n~ 126 (323)
.+++.|++|.|+-|.+..- ..+..+++|++|+|..|.|..+-+ -+.+++ +|+.|-+. .|.
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlp-sLr~LWL~-ENP 99 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLP-SLRTLWLD-ENP 99 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc-hhhhHhhc-cCC
Confidence 4789999999999876654 347799999999999999976633 456778 88988887 665
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=0.072 Score=48.76 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=49.5
Q ss_pred CCCCCEEEeeCCCCCC--CCCcccCCCcccceeeccccccc----cCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239 65 LKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLYAKGIATT----EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT 138 (323)
Q Consensus 65 L~~L~~L~Ls~n~~~~--~lp~~l~~l~~L~~L~L~~n~i~----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~ 138 (323)
.+.++.|||.+|.+.. .+-..+.+|+.|+.|+++.|.+. .+| ..+. +|+.|-+. +.. |.--.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~-nl~~lVLN-gT~-------L~w~~ 137 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK-NLRVLVLN-GTG-------LSWTQ 137 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc-ceEEEEEc-CCC-------CChhh
Confidence 4567778888876653 23334667888888888888753 344 2333 67777765 433 11111
Q ss_pred CccccccCCCCCeecCCCC
Q 039239 139 LSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 139 L~~~l~~l~~L~~L~Ls~N 157 (323)
+...+..++.+++|+++.|
T Consensus 138 ~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhcchhhhhhhhccc
Confidence 1234567778888888888
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.25 E-value=1.6 Score=34.17 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=26.2
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEcc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSD 122 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~ 122 (323)
+.++++|+.+.+.++ ....-...+.++.+|+.+.+.+ .+..++.. +..++ +|+.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~-~l~~i~~~ 89 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT-NLKNIDIP 89 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T-TECEEEET
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc-cccccccC
Confidence 445556667776653 2222223455665677776654 44444432 33355 66666664
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.91 E-value=1.1 Score=40.72 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=61.4
Q ss_pred EEecCCCCCCc----CCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKS----LPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~----lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|||+|.+-+. +-..|.+-.+|+..+++. -.++..-+.+. .++.-+-+.+-+++.|+..+||+|-
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~----------~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELY----------SNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHH----------HHHHHHHHHHhcCCcceeeeccccc
Confidence 68888885543 344567788999999887 44544322110 1223333445677888888888888
Q ss_pred CCCCCCcc----cCCCcccceeeccccccccC
Q 039239 78 NIQKLPHE----LGNLEALNSLYAKGIATTEV 105 (323)
Q Consensus 78 ~~~~lp~~----l~~l~~L~~L~L~~n~i~~l 105 (323)
+....|+. +++-+.|.+|.+++|.++.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 87777754 45667888888888887643
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.01 E-value=0.17 Score=45.89 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=56.8
Q ss_pred cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCC----C-------cc
Q 039239 17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKL----P-------HE 85 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l----p-------~~ 85 (323)
+..+..++.++||||..-.+ ..+.+-..|.+-++|+..+++. -++|.. + +.
T Consensus 26 l~~~d~~~evdLSGNtigtE-----------------A~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~a 87 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTE-----------------AMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKA 87 (388)
T ss_pred HHhhcceeEEeccCCcccHH-----------------HHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHH
Confidence 34478888899999643222 1122333345567777777776 344432 2 23
Q ss_pred cCCCcccceeeccccccc-cCChh----HHhcccccceeEccCCCC
Q 039239 86 LGNLEALNSLYAKGIATT-EVPSS----VVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 86 l~~l~~L~~L~L~~n~i~-~lP~~----i~~l~~~L~~L~l~~~n~ 126 (323)
+-.+++|+..++++|.++ +.|+. |..-. .|++|.++ +|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~-NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLN-NNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCC-CceeEEee-cCC
Confidence 567788999999999985 45543 34445 68889888 665
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.74 E-value=0.068 Score=47.28 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=68.9
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
|.....-+.||++.|.. -.+-..++-++.|..|+++.|.+..+|...+.+. .+..+++. +|. ++.. |.
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~-e~~~~~~~-~n~-------~~~~--p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR-ETVNAASH-KNN-------HSQQ--PK 105 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHH-HHHHHHhh-ccc-------hhhC--Cc
Confidence 55667888999998753 3444567778889999999999999999999988 88888888 555 5655 88
Q ss_pred ccccCCCCCeecCCCC
Q 039239 142 DGLHMTDLRHFDLSGN 157 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N 157 (323)
++++.+.++++++.++
T Consensus 106 s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKT 121 (326)
T ss_pred cccccCCcchhhhccC
Confidence 8899999999999998
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.57 E-value=0.4 Score=46.46 Aligned_cols=16 Identities=56% Similarity=0.901 Sum_probs=10.2
Q ss_pred CCCCCEEeeeCCCCCc
Q 039239 20 LESLKKLNLSGCSKLK 35 (323)
Q Consensus 20 L~~L~~L~Ls~c~~l~ 35 (323)
.+.|+.|.+.+|..+.
T Consensus 187 ~~~L~~l~l~~~~~~~ 202 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKIT 202 (482)
T ss_pred CchhhHhhhcccccCC
Confidence 5667777777765444
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.35 E-value=1 Score=43.59 Aligned_cols=100 Identities=29% Similarity=0.347 Sum_probs=59.2
Q ss_pred cCcccccc--ccccccCCCCCCEEEeeCC-CCCCCCC----cccCCCcccceeeccccc-cccC-ChhHHh-ccccccee
Q 039239 50 CGCKRLKS--LPSSICKLKSLKVLNLDGC-SNIQKLP----HELGNLEALNSLYAKGIA-TTEV-PSSVVR-LNNKLYEL 119 (323)
Q Consensus 50 ~~~~~l~~--lP~~i~~L~~L~~L~Ls~n-~~~~~lp----~~l~~l~~L~~L~L~~n~-i~~l-P~~i~~-l~~~L~~L 119 (323)
.+|..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++++. ++.. =..+.. ++ +|+.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~-~L~~L 274 (482)
T KOG1947|consen 196 SGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP-NLETL 274 (482)
T ss_pred cccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC-CcceE
Confidence 34544444 3334556788999999873 3322222 233455788888888887 4422 123332 56 88888
Q ss_pred EccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 120 SSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 120 ~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+. +|.. ++...+..-...+++|++|++++|
T Consensus 275 ~l~-~c~~------lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 275 SLS-NCSN------LTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred ccC-CCCc------cchhHHHHHHHhcCcccEEeeecC
Confidence 876 6653 222222222356788999999988
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.67 E-value=5.3 Score=31.07 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=47.6
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
.+.++++|+.+.+.. .....-...|..+++|+.+.+.++ +..++. .+..++ +++.+.+. + . +..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~-~-~-------~~~i~- 73 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFP-N-N-------LKSIG- 73 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEET-S-T-------T-EE--
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-cccccccc-c-c-------ccccc-
Confidence 356777899999875 333333346788889999999875 777654 455555 78888886 4 2 34442
Q ss_pred ccccccCCCCCeecCCCC
Q 039239 140 SIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N 157 (323)
...+..+++|+.+++..+
T Consensus 74 ~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccccCcc
Confidence 245666788888887655
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.76 E-value=1.6 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.6
Q ss_pred ccceeeccccccccCCh
Q 039239 91 ALNSLYAKGIATTEVPS 107 (323)
Q Consensus 91 ~L~~L~L~~n~i~~lP~ 107 (323)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57788888888888875
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.09 E-value=2.9 Score=23.63 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=9.7
Q ss_pred cccceeeccccccccC
Q 039239 90 EALNSLYAKGIATTEV 105 (323)
Q Consensus 90 ~~L~~L~L~~n~i~~l 105 (323)
++|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=0.64 Score=40.29 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=6.0
Q ss_pred CCCCeecCCCC
Q 039239 147 TDLRHFDLSGN 157 (323)
Q Consensus 147 ~~L~~L~Ls~N 157 (323)
++|+.|++++|
T Consensus 151 ~~L~~L~lsgC 161 (221)
T KOG3864|consen 151 PSLQDLDLSGC 161 (221)
T ss_pred cchheeeccCC
Confidence 45555555555
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=65.45 E-value=0.13 Score=45.50 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=41.8
Q ss_pred cCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCc
Q 039239 12 SLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLE 90 (323)
Q Consensus 12 ~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~ 90 (323)
.+| ..+.....-+.||++.+.. ..+-..+..++.|..|+++.|. ...+|+.++.+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~----------------------vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~ 88 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRL----------------------VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQR 88 (326)
T ss_pred ccchhhhhccceeeeehhhhhHH----------------------HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHH
Confidence 344 3355567777888887431 1122223334444444444432 334444444444
Q ss_pred ccceeeccccccccCChhHHhcccccceeEcc
Q 039239 91 ALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 91 ~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
.+..+++..|..+..|.+.+..+ .++.+++-
T Consensus 89 e~~~~~~~~n~~~~~p~s~~k~~-~~k~~e~k 119 (326)
T KOG0473|consen 89 ETVNAASHKNNHSQQPKSQKKEP-HPKKNEQK 119 (326)
T ss_pred HHHHHHhhccchhhCCccccccC-Ccchhhhc
Confidence 45555555555555555555444 44444443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.15 E-value=3.6 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=8.0
Q ss_pred cccceeeccccccc
Q 039239 90 EALNSLYAKGIATT 103 (323)
Q Consensus 90 ~~L~~L~L~~n~i~ 103 (323)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 46677777777764
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.25 E-value=6.5 Score=21.76 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=12.8
Q ss_pred CCCCCEEeeeCCCCCc
Q 039239 20 LESLKKLNLSGCSKLK 35 (323)
Q Consensus 20 L~~L~~L~Ls~c~~l~ 35 (323)
+++|++|+|++|..+.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4689999999997554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=1.2 Score=38.54 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=17.3
Q ss_pred cccceeeccccc-cccC-ChhHHhcccccceeEcc
Q 039239 90 EALNSLYAKGIA-TTEV-PSSVVRLNNKLYELSSD 122 (323)
Q Consensus 90 ~~L~~L~L~~n~-i~~l-P~~i~~l~~~L~~L~l~ 122 (323)
++|+.|++++|. |++- -..+..++ +|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lk-nLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLK-NLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhh-hhHHHHhc
Confidence 456666666654 4321 23455555 66666655
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.34 E-value=10 Score=21.49 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=9.7
Q ss_pred cccceeeccccccc
Q 039239 90 EALNSLYAKGIATT 103 (323)
Q Consensus 90 ~~L~~L~L~~n~i~ 103 (323)
++|++|+|++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777764
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=49.77 E-value=7.1 Score=37.65 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCCCCEEeeeCCCCCccCCC-----CcCCcchhhhcCcccccccccc-c-cCCCCCCEEEeeCCCCCCC--CCcccCCC
Q 039239 19 NLESLKKLNLSGCSKLKRLPE-----FSSAGNIEEICGCKRLKSLPSS-I-CKLKSLKVLNLDGCSNIQK--LPHELGNL 89 (323)
Q Consensus 19 ~L~~L~~L~Ls~c~~l~~~p~-----~~~~l~l~~L~~~~~l~~lP~~-i-~~L~~L~~L~Ls~n~~~~~--lp~~l~~l 89 (323)
.+..|++|+.++|...+..+- --..+.+..+..|..++..--. + .+...|+.+++.+|..... +-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 366777777777766443321 0112223344445443322110 1 2456778888877654322 22223356
Q ss_pred cccceeecccccc-cc-----CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 90 EALNSLYAKGIAT-TE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 90 ~~L~~L~L~~n~i-~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+.|+.|.++.|.. +. +-..-..+. .|+.+.++ ++... +.-. -..+..+++|+.+++-+|
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~-n~p~i------~d~~-Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLE-GLEVLELD-NCPLI------TDAT-LEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhcccccc-ccceeeec-CCCCc------hHHH-HHHHhhCcccceeeeech
Confidence 7788888877653 21 122223334 57777777 66631 1100 023456778888888777
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=34.75 E-value=5.1 Score=38.56 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCCEEEeeCCCCCCCCC--cccCCCcccceeeccccc-ccc--CChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 67 SLKVLNLDGCSNIQKLP--HELGNLEALNSLYAKGIA-TTE--VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 67 ~L~~L~Ls~n~~~~~lp--~~l~~l~~L~~L~L~~n~-i~~--lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
.|+.|.+.||.-.+.-+ ....+++++++|.+.++. ++. .-+.-..++ +|+++++. .|.. ++...|-.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~-~l~~l~L~-~c~~------iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR-KLRHLNLH-SCSS------ITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc-hhhhhhhc-ccch------hHHHHHHH
Confidence 46777777765444322 223456677777777765 221 111122334 67777766 5442 22221111
Q ss_pred ccccCCCCCeecCCCC
Q 039239 142 DGLHMTDLRHFDLSGN 157 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N 157 (323)
-...+++|++|++++|
T Consensus 211 la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWC 226 (483)
T ss_pred HHHhhhhHHHhhhccC
Confidence 1235666677777666
Done!