Query 039239
Match_columns 323
No_of_seqs 411 out of 3302
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.7E-19 6E-24 167.1 11.6 164 1-181 85-263 (328)
2 4fcg_A Uncharacterized protein 99.8 2E-19 6.7E-24 166.7 11.5 185 1-221 108-307 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 7E-19 2.4E-23 161.8 6.9 204 2-223 55-276 (313)
4 3rgz_A Protein brassinosteroid 99.7 2.6E-17 8.8E-22 168.9 11.7 124 1-126 422-549 (768)
5 3rgz_A Protein brassinosteroid 99.7 3.6E-17 1.2E-21 167.8 10.8 108 2-109 447-558 (768)
6 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-16 7E-21 142.8 13.3 176 2-181 37-235 (285)
7 1ozn_A Reticulon 4 receptor; N 99.7 2E-16 6.7E-21 143.0 11.9 164 2-181 16-187 (285)
8 4eco_A Uncharacterized protein 99.7 4.3E-17 1.5E-21 163.9 8.1 164 2-181 86-363 (636)
9 2o6q_A Variable lymphocyte rec 99.7 6.9E-16 2.3E-20 138.6 12.8 166 2-181 42-215 (270)
10 1ogq_A PGIP-2, polygalacturona 99.7 9.9E-17 3.4E-21 147.4 7.0 123 1-126 105-232 (313)
11 4eco_A Uncharacterized protein 99.6 9.2E-17 3.1E-21 161.5 6.8 167 1-181 210-412 (636)
12 1xku_A Decorin; proteoglycan, 99.6 8.2E-16 2.8E-20 141.8 11.8 120 2-126 57-182 (330)
13 3m19_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 134.9 12.5 164 2-181 19-189 (251)
14 4ecn_A Leucine-rich repeat pro 99.6 1.4E-16 4.7E-21 165.1 6.2 158 2-161 328-589 (876)
15 1p9a_G Platelet glycoprotein I 99.6 9.2E-16 3.1E-20 139.6 10.2 164 2-181 36-205 (290)
16 3zyi_A Leucine-rich repeat-con 99.6 1.7E-15 5.8E-20 145.9 11.3 153 2-167 80-240 (452)
17 3m19_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 131.6 13.1 147 1-158 39-191 (251)
18 3zyj_A Leucine-rich repeat-con 99.6 3.3E-15 1.1E-19 143.4 11.5 116 62-182 156-290 (440)
19 3oja_B Anopheles plasmodium-re 99.6 2.7E-15 9.2E-20 149.6 11.2 118 1-122 79-200 (597)
20 3zyj_A Leucine-rich repeat-con 99.6 4E-15 1.4E-19 142.8 11.9 106 49-158 167-291 (440)
21 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.9E-19 130.8 14.0 164 2-181 46-215 (272)
22 4ecn_A Leucine-rich repeat pro 99.6 5.7E-16 2E-20 160.4 6.1 148 1-161 452-635 (876)
23 3zyi_A Leucine-rich repeat-con 99.6 4.2E-15 1.4E-19 143.1 11.8 167 2-181 104-300 (452)
24 3rfs_A Internalin B, repeat mo 99.6 5.7E-15 2E-19 132.8 11.6 145 1-158 67-217 (272)
25 3v47_A TOLL-like receptor 5B a 99.6 3.6E-15 1.2E-19 143.0 10.8 39 2-40 134-173 (455)
26 1p9a_G Platelet glycoprotein I 99.6 9.5E-15 3.2E-19 132.9 13.0 162 2-181 15-182 (290)
27 2ft3_A Biglycan; proteoglycan, 99.6 7.4E-15 2.5E-19 135.6 12.3 119 2-126 59-183 (332)
28 2v9t_B SLIT homolog 2 protein 99.6 5.7E-15 2E-19 128.9 10.8 143 2-181 16-162 (220)
29 3o6n_A APL1; leucine-rich repe 99.6 4.9E-15 1.7E-19 139.7 11.0 117 2-122 74-194 (390)
30 2id5_A Lingo-1, leucine rich r 99.6 5.9E-15 2E-19 142.7 11.7 119 2-122 37-184 (477)
31 2z62_A TOLL-like receptor 4, v 99.6 5.3E-15 1.8E-19 132.9 10.4 123 1-126 32-160 (276)
32 3v47_A TOLL-like receptor 5B a 99.6 2.6E-15 8.9E-20 144.0 8.7 105 1-105 58-169 (455)
33 2z62_A TOLL-like receptor 4, v 99.6 4.7E-15 1.6E-19 133.3 9.5 147 10-168 19-172 (276)
34 2z66_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 137.6 7.0 167 2-181 33-209 (306)
35 1xku_A Decorin; proteoglycan, 99.6 8.4E-15 2.9E-19 135.0 11.2 165 1-181 80-250 (330)
36 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 126.6 12.5 142 2-157 24-169 (229)
37 1wwl_A Monocyte differentiatio 99.6 1.7E-15 5.7E-20 139.0 6.0 150 1-161 99-269 (312)
38 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 127.0 11.8 146 23-182 21-170 (229)
39 2z66_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 138.2 5.8 121 2-126 57-186 (306)
40 2o6s_A Variable lymphocyte rec 99.6 2.9E-14 9.8E-19 122.8 13.2 143 2-158 12-160 (208)
41 2o6q_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 128.7 12.7 164 2-181 21-191 (270)
42 4g8a_A TOLL-like receptor 4; l 99.6 7E-15 2.4E-19 145.9 10.2 143 10-164 43-192 (635)
43 3t6q_A CD180 antigen; protein- 99.6 6.7E-15 2.3E-19 146.3 9.9 122 2-126 259-387 (606)
44 2ft3_A Biglycan; proteoglycan, 99.6 1.7E-14 5.9E-19 133.1 11.8 167 2-181 128-304 (332)
45 2ell_A Acidic leucine-rich nuc 99.6 5.2E-15 1.8E-19 123.2 7.4 125 20-157 23-157 (168)
46 4ezg_A Putative uncharacterize 99.6 1.2E-14 4.1E-19 124.4 9.8 106 61-181 83-191 (197)
47 2v70_A SLIT-2, SLIT homolog 2 99.6 1.9E-14 6.5E-19 125.6 11.1 145 2-181 16-163 (220)
48 2z80_A TOLL-like receptor 2, v 99.5 2.3E-15 7.8E-20 140.2 5.3 144 2-157 57-208 (353)
49 3t6q_A CD180 antigen; protein- 99.5 9.1E-15 3.1E-19 145.3 9.6 152 1-162 37-196 (606)
50 2xwt_C Thyrotropin receptor; s 99.5 8.4E-15 2.9E-19 128.9 8.3 96 55-161 68-172 (239)
51 2z80_A TOLL-like receptor 2, v 99.5 3.1E-15 1.1E-19 139.3 5.7 116 62-181 170-311 (353)
52 4glp_A Monocyte differentiatio 99.5 6.9E-15 2.4E-19 134.6 7.7 151 1-161 95-267 (310)
53 3vq2_A TLR4, TOLL-like recepto 99.5 2.7E-14 9.3E-19 141.9 11.3 88 61-157 75-163 (606)
54 2xwt_C Thyrotropin receptor; s 99.5 2.6E-14 8.8E-19 125.8 9.8 122 1-126 35-167 (239)
55 1h6u_A Internalin H; cell adhe 99.5 3.5E-14 1.2E-18 130.1 10.8 135 2-157 46-183 (308)
56 2z7x_B TOLL-like receptor 1, v 99.5 1.2E-14 4.2E-19 141.8 8.1 149 18-181 321-478 (520)
57 2id5_A Lingo-1, leucine rich r 99.5 4.1E-14 1.4E-18 136.7 11.0 175 2-181 133-330 (477)
58 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 133.1 9.8 165 2-181 23-199 (361)
59 3vq2_A TLR4, TOLL-like recepto 99.5 3.1E-14 1.1E-18 141.4 9.9 151 1-162 36-198 (606)
60 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.5E-19 116.6 7.4 111 20-161 16-129 (149)
61 2v70_A SLIT-2, SLIT homolog 2 99.5 6.3E-14 2.1E-18 122.3 10.4 126 1-158 36-165 (220)
62 1ziw_A TOLL-like receptor 3; i 99.5 4.6E-14 1.6E-18 142.2 11.0 167 2-181 386-594 (680)
63 2z7x_B TOLL-like receptor 1, v 99.5 4.6E-14 1.6E-18 137.7 10.4 145 1-158 328-480 (520)
64 1w8a_A SLIT protein; signaling 99.5 1.1E-13 3.8E-18 118.1 11.0 122 2-158 13-138 (192)
65 2v9t_B SLIT homolog 2 protein 99.5 1.3E-13 4.5E-18 120.2 11.7 126 1-158 36-164 (220)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.7E-14 1.3E-18 140.1 8.9 149 18-182 350-508 (562)
67 3oja_B Anopheles plasmodium-re 99.5 3.9E-14 1.3E-18 141.2 9.2 148 2-161 104-317 (597)
68 1h6t_A Internalin B; cell adhe 99.5 9.1E-14 3.1E-18 126.4 10.8 155 2-181 51-210 (291)
69 2z63_A TOLL-like receptor 4, v 99.5 4.8E-14 1.7E-18 138.7 9.5 149 2-161 33-193 (570)
70 3oja_A Leucine-rich immune mol 99.5 5.3E-14 1.8E-18 137.1 9.5 163 1-181 38-224 (487)
71 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.2E-18 125.8 11.3 157 1-181 67-227 (308)
72 3o6n_A APL1; leucine-rich repe 99.5 1.7E-13 5.7E-18 129.2 11.8 148 1-161 97-288 (390)
73 2wfh_A SLIT homolog 2 protein 99.5 2.5E-13 8.5E-18 116.1 11.5 121 2-158 15-138 (193)
74 2z81_A CD282 antigen, TOLL-lik 99.5 2.1E-14 7.2E-19 140.9 5.4 122 2-126 31-159 (549)
75 3j0a_A TOLL-like receptor 5; m 99.5 7.1E-14 2.4E-18 144.7 9.6 146 2-157 29-184 (844)
76 4glp_A Monocyte differentiatio 99.5 9.3E-14 3.2E-18 127.1 8.7 163 1-181 121-304 (310)
77 3oja_A Leucine-rich immune mol 99.5 2.9E-14 9.8E-19 138.9 5.0 163 1-181 62-247 (487)
78 2o6s_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 115.1 11.7 144 24-181 10-158 (208)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.8E-13 6.2E-18 135.1 10.3 145 1-158 357-509 (562)
80 3o53_A Protein LRIM1, AGAP0063 99.4 3.6E-14 1.2E-18 130.4 4.8 167 1-181 62-247 (317)
81 3j0a_A TOLL-like receptor 5; m 99.4 1.6E-13 5.5E-18 142.0 10.1 147 2-161 9-164 (844)
82 2z63_A TOLL-like receptor 4, v 99.4 3.2E-14 1.1E-18 140.0 4.4 109 61-181 416-528 (570)
83 1wwl_A Monocyte differentiatio 99.4 9.9E-14 3.4E-18 127.1 7.0 163 1-181 125-306 (312)
84 2ell_A Acidic leucine-rich nuc 99.4 4.5E-13 1.5E-17 111.3 9.8 122 46-181 28-157 (168)
85 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7.2E-18 111.1 7.6 103 66-181 17-123 (149)
86 1ziw_A TOLL-like receptor 3; i 99.4 1.8E-13 6E-18 137.9 8.4 151 2-163 30-189 (680)
87 2xot_A Amphoterin-induced prot 99.4 5.7E-13 1.9E-17 124.6 10.4 146 24-181 21-173 (361)
88 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4.1E-18 140.8 6.2 110 12-126 215-327 (727)
89 4g8a_A TOLL-like receptor 4; l 99.4 4.8E-13 1.6E-17 132.6 10.3 119 32-161 41-164 (635)
90 1m9s_A Internalin B; cell inva 99.4 5.5E-13 1.9E-17 133.2 10.1 156 2-181 48-207 (605)
91 3o53_A Protein LRIM1, AGAP0063 99.4 5.8E-13 2E-17 122.2 9.2 161 2-181 104-272 (317)
92 3cvr_A Invasion plasmid antige 99.4 1.7E-12 5.7E-17 128.8 12.9 131 2-161 64-196 (571)
93 2z81_A CD282 antigen, TOLL-lik 99.4 2.5E-13 8.5E-18 133.2 6.7 152 3-167 11-170 (549)
94 4fmz_A Internalin; leucine ric 99.4 1.9E-12 6.6E-17 119.6 11.9 116 2-126 49-166 (347)
95 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5E-17 120.4 10.5 158 2-181 115-297 (347)
96 1h6t_A Internalin B; cell adhe 99.4 1.4E-12 4.8E-17 118.5 9.9 142 1-162 72-217 (291)
97 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.9E-17 122.0 9.5 152 1-163 34-220 (350)
98 3cvr_A Invasion plasmid antige 99.4 1.3E-12 4.6E-17 129.4 10.5 148 1-181 84-240 (571)
99 4ezg_A Putative uncharacterize 99.4 1E-12 3.5E-17 112.3 8.3 142 1-158 48-193 (197)
100 1xeu_A Internalin C; cellular 99.4 1.9E-12 6.6E-17 115.9 10.3 153 4-181 26-182 (263)
101 1jl5_A Outer protein YOPM; leu 99.4 2.8E-12 9.7E-17 123.7 12.3 114 1-126 135-248 (454)
102 1xeu_A Internalin C; cellular 99.4 6.3E-13 2.1E-17 119.1 6.6 139 1-161 45-188 (263)
103 3bz5_A Internalin-J, INLJ; leu 99.4 3.3E-12 1.1E-16 123.4 12.1 147 1-162 89-250 (457)
104 1jl5_A Outer protein YOPM; leu 99.4 3.7E-12 1.2E-16 123.0 12.4 140 21-170 111-264 (454)
105 3g06_A SSPH2 (leucine-rich rep 99.4 4E-12 1.4E-16 127.3 13.0 34 145-181 259-294 (622)
106 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.7E-17 110.1 7.6 127 17-181 15-150 (176)
107 3g06_A SSPH2 (leucine-rich rep 99.3 2.9E-12 1E-16 128.3 11.0 105 2-122 45-149 (622)
108 3bz5_A Internalin-J, INLJ; leu 99.3 4.2E-12 1.4E-16 122.6 11.6 145 1-161 68-228 (457)
109 2o6r_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 104.4 12.1 121 2-158 12-136 (177)
110 2ast_B S-phase kinase-associat 99.3 7.2E-14 2.5E-18 128.6 -0.9 91 58-157 160-257 (336)
111 1dce_A Protein (RAB geranylger 99.3 3.3E-12 1.1E-16 126.7 10.5 95 55-161 453-549 (567)
112 1o6v_A Internalin A; bacterial 99.3 3.7E-12 1.3E-16 122.9 10.5 115 2-126 204-320 (466)
113 1m9s_A Internalin B; cell inva 99.3 6.4E-12 2.2E-16 125.5 12.1 142 1-162 69-214 (605)
114 1w8a_A SLIT protein; signaling 99.3 4.9E-12 1.7E-16 107.8 8.8 115 53-181 18-136 (192)
115 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 106.6 7.4 86 61-157 59-150 (176)
116 1ds9_A Outer arm dynein; leuci 99.3 2.2E-14 7.5E-19 122.8 -7.0 109 16-158 43-152 (198)
117 1dce_A Protein (RAB geranylger 99.3 6.5E-12 2.2E-16 124.6 9.6 143 9-181 397-543 (567)
118 4b8c_D Glucose-repressible alc 99.3 3.7E-12 1.3E-16 129.9 7.3 91 55-157 236-326 (727)
119 1o6v_A Internalin A; bacterial 99.3 1.4E-11 4.7E-16 118.9 10.9 137 1-157 181-319 (466)
120 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.7E-16 105.9 8.6 115 53-182 20-137 (193)
121 2ast_B S-phase kinase-associat 99.2 4.3E-13 1.5E-17 123.4 -1.0 66 58-125 110-178 (336)
122 2r9u_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 100.9 9.6 96 53-161 22-121 (174)
123 3g39_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 99.4 9.2 94 53-158 19-114 (170)
124 2r9u_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 98.9 9.7 98 2-126 17-116 (174)
125 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 97.5 10.1 98 2-126 14-113 (170)
126 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 96.8 10.1 102 1-126 32-135 (177)
127 1ds9_A Outer arm dynein; leuci 99.1 3.8E-13 1.3E-17 115.1 -6.4 135 18-183 15-152 (198)
128 2ca6_A RAN GTPase-activating p 99.1 1.2E-12 4.2E-17 123.1 -4.7 148 2-158 65-256 (386)
129 2ifg_A High affinity nerve gro 99.1 3.9E-10 1.3E-14 104.3 9.6 101 2-126 13-114 (347)
130 2ca6_A RAN GTPase-activating p 99.1 8.1E-12 2.8E-16 117.5 -1.9 87 62-157 90-197 (386)
131 3goz_A Leucine-rich repeat-con 99.0 3.1E-12 1.1E-16 119.5 -5.5 171 1-181 55-263 (362)
132 4ay9_X Follicle-stimulating ho 99.0 1.4E-09 4.7E-14 101.1 10.3 149 14-181 97-256 (350)
133 3goz_A Leucine-rich repeat-con 99.0 5.9E-11 2E-15 110.8 0.7 153 1-161 2-183 (362)
134 1z7x_W Ribonuclease inhibitor; 98.9 1.2E-11 4.2E-16 118.4 -6.5 148 2-158 90-268 (461)
135 2ifg_A High affinity nerve gro 98.9 2.9E-09 9.8E-14 98.4 8.0 92 54-158 20-115 (347)
136 1z7x_W Ribonuclease inhibitor; 98.8 1.2E-10 4E-15 111.5 -5.7 33 89-122 255-292 (461)
137 3sb4_A Hypothetical leucine ri 98.5 1.6E-07 5.6E-12 86.1 7.6 90 65-166 225-318 (329)
138 3ogk_B Coronatine-insensitive 98.4 2.6E-08 8.7E-13 98.2 -0.4 68 57-126 234-304 (592)
139 3ogk_B Coronatine-insensitive 98.4 7.9E-09 2.7E-13 101.9 -4.3 57 65-122 191-251 (592)
140 3un9_A NLR family member X1; l 98.4 5.4E-09 1.8E-13 98.2 -5.3 146 2-157 77-249 (372)
141 2p1m_B Transport inhibitor res 98.2 5.7E-08 1.9E-12 95.7 -4.3 118 2-122 110-243 (594)
142 1io0_A Tropomodulin; LRR prote 98.1 3.4E-07 1.2E-11 77.2 0.6 116 17-157 32-161 (185)
143 2p1m_B Transport inhibitor res 98.1 4.4E-07 1.5E-11 89.3 -0.2 107 18-126 102-222 (594)
144 3sb4_A Hypothetical leucine ri 97.9 3E-05 1E-09 70.8 8.2 89 54-154 237-328 (329)
145 3un9_A NLR family member X1; l 97.8 2E-06 7E-11 80.5 -0.4 122 2-126 106-250 (372)
146 2ra8_A Uncharacterized protein 97.8 3.2E-05 1.1E-09 72.2 6.6 15 17-31 168-182 (362)
147 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 68.9 5.7 61 64-126 168-231 (267)
148 1io0_A Tropomodulin; LRR prote 97.7 7.9E-06 2.7E-10 68.7 0.7 106 2-126 41-162 (185)
149 4fdw_A Leucine rich hypothetic 97.6 0.00019 6.4E-09 67.8 9.6 91 62-161 222-315 (401)
150 3e4g_A ATP synthase subunit S, 97.6 5.4E-05 1.9E-09 63.2 5.1 93 57-157 52-149 (176)
151 3rw6_A Nuclear RNA export fact 97.5 3.5E-05 1.2E-09 68.8 3.2 63 87-161 167-237 (267)
152 4fdw_A Leucine rich hypothetic 97.5 0.00087 3E-08 63.2 11.8 55 66-122 248-308 (401)
153 3e4g_A ATP synthase subunit S, 97.4 3.6E-05 1.2E-09 64.3 1.0 93 12-127 52-151 (176)
154 2ra8_A Uncharacterized protein 96.9 0.00032 1.1E-08 65.3 2.2 125 2-157 177-317 (362)
155 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0021 7.2E-08 54.5 1.2 42 62-103 66-111 (197)
156 3rfe_A Platelet glycoprotein I 94.9 0.021 7E-07 44.8 3.9 53 70-126 12-66 (130)
157 4h09_A Hypothetical leucine ri 94.8 0.13 4.3E-06 47.3 9.6 57 63-122 260-318 (379)
158 3rfe_A Platelet glycoprotein I 94.7 0.032 1.1E-06 43.7 4.6 49 53-103 18-68 (130)
159 4gt6_A Cell surface protein; l 94.5 0.092 3.1E-06 48.7 7.8 82 62-157 284-367 (394)
160 1pgv_A TMD-1, tropomodulin TMD 94.3 0.022 7.6E-07 48.1 3.0 86 63-157 38-136 (197)
161 4h09_A Hypothetical leucine ri 93.4 0.44 1.5E-05 43.5 10.2 88 62-161 236-325 (379)
162 4gt6_A Cell surface protein; l 93.3 0.15 5.3E-06 47.1 7.0 106 61-181 260-367 (394)
163 4fs7_A Uncharacterized protein 92.4 0.36 1.2E-05 44.6 8.1 12 19-30 228-239 (394)
164 4fs7_A Uncharacterized protein 92.4 0.53 1.8E-05 43.4 9.3 15 16-30 157-171 (394)
165 2lz0_A Uncharacterized protein 20.7 95 0.0032 22.3 3.7 38 62-100 16-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.7e-19 Score=167.09 Aligned_cols=164 Identities=23% Similarity=0.382 Sum_probs=132.1
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
.|+|++|. +..+|..++++++|++|+|++|... .+|..++.+. + .++++| .+..+|..++++++|++|++++|+
T Consensus 85 ~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 85 ALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEET
T ss_pred EEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCC
Confidence 37899988 4588988999999999999998766 8887665554 3 345554 566899999999999999999999
Q ss_pred CCCCCCcccCC---------CcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCC
Q 039239 78 NIQKLPHELGN---------LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD 148 (323)
Q Consensus 78 ~~~~lp~~l~~---------l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~ 148 (323)
+.+.+|..++. +++|++|++++|.++.+|..++.++ +|+.|+++ +|. +..+ +..++.+++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~L~-~N~-------l~~l--~~~l~~l~~ 230 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIR-NSP-------LSAL--GPAIHHLPK 230 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT-TCCEEEEE-SSC-------CCCC--CGGGGGCTT
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC-CCCEEEcc-CCC-------CCcC--chhhccCCC
Confidence 99999988765 9999999999999999999999999 99999999 888 6654 667888888
Q ss_pred CCeecCCCC-c--ccCccccccccchhhhhhhhhhh
Q 039239 149 LRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 149 L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
|++|++++| + .+| ..+..+ .+|+.+++..|
T Consensus 231 L~~L~Ls~n~~~~~~p-~~~~~l--~~L~~L~L~~n 263 (328)
T 4fcg_A 231 LEELDLRGCTALRNYP-PIFGGR--APLKRLILKDC 263 (328)
T ss_dssp CCEEECTTCTTCCBCC-CCTTCC--CCCCEEECTTC
T ss_pred CCEEECcCCcchhhhH-HHhcCC--CCCCEEECCCC
Confidence 999999988 5 555 344444 55555555544
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2e-19 Score=166.73 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=151.7
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccC---------CCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICK---------LKSL 68 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~---------L~~L 68 (323)
+|+|++|.+. .+|..++++++|++|+|++|... .+|..++.+. ..++++|+.++.+|..++. +++|
T Consensus 108 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L 185 (328)
T 4fcg_A 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185 (328)
T ss_dssp EEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred EEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence 4899999866 89999999999999999998665 8887666554 4456788899999988765 9999
Q ss_pred CEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCC
Q 039239 69 KVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD 148 (323)
Q Consensus 69 ~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~ 148 (323)
++|++++|.+. .+|..++++++|++|++++|.++.+|..+..++ +|+.|+++ +|.. ... +|..++.+++
T Consensus 186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~-~L~~L~Ls-~n~~------~~~--~p~~~~~l~~ 254 (328)
T 4fcg_A 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLR-GCTA------LRN--YPPIFGGRAP 254 (328)
T ss_dssp CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT-TCCEEECT-TCTT------CCB--CCCCTTCCCC
T ss_pred CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCC-CCCEEECc-CCcc------hhh--hHHHhcCCCC
Confidence 99999999766 899999999999999999999999999999999 99999999 7763 233 3778899999
Q ss_pred CCeecCCCC-c--ccCccccccccchhhhhhhhhhhhhHHHHhhcccccccceeEeCCCCCCCcceeccccCCeeE
Q 039239 149 LRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSS 221 (323)
Q Consensus 149 L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n~~~~~l~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sl~ 221 (323)
|++|++++| + .+| ..+..+ ++|+.+++..|... +.+|+||........+.
T Consensus 255 L~~L~L~~n~~~~~~p-~~~~~l--~~L~~L~L~~n~~~--------------------~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLP-LDIHRL--TQLEKLDLRGCVNL--------------------SRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CCEEECTTCTTCCBCC-TTGGGC--TTCCEEECTTCTTC--------------------CCCCGGGGGSCTTCEEE
T ss_pred CCEEECCCCCchhhcc-hhhhcC--CCCCEEeCCCCCch--------------------hhccHHHhhccCceEEe
Confidence 999999999 5 776 456555 77777776665222 57899998877665554
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=7e-19 Score=161.84 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=143.7
Q ss_pred EEecCCCCCC--cCCcccCCCCCCCEEeeeC-CCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeC
Q 039239 2 LDLSDCKSLK--SLPAEISNLESLKKLNLSG-CSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDG 75 (323)
Q Consensus 2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~-c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~ 75 (323)
|+|++|.+.+ .+|..++++++|++|++++ |...+.+|..++.+. ..+++++...+.+|..+.++++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 7899999888 8999999999999999996 777778887766554 334556554458888899999999999999
Q ss_pred CCCCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239 76 CSNIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL 154 (323)
Q Consensus 76 n~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L 154 (323)
|.+.+.+|..++.+++|++|++++|.++ .+|..++.++.+|+.|+++ +|. +... +|..+..++ |++|++
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~-------l~~~-~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNR-------LTGK-IPPTFANLN-LAFVDL 204 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSE-------EEEE-CCGGGGGCC-CSEEEC
T ss_pred CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCe-------eecc-CChHHhCCc-ccEEEC
Confidence 9988899999999999999999999996 8899898886579999998 776 4422 255566665 777777
Q ss_pred CCC-c-ccCccccccccchhhhhhhhhhhhh---------HHHHhhcccccccceeEeCCCCCCCcceeccccCCeeEEe
Q 039239 155 SGN-F-KLDRKEVRGIFEDALQDIQLMAAAR---------WKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSIT 223 (323)
Q Consensus 155 s~N-l-~lP~~~L~~L~~~sL~~l~l~~n~~---------~~~l~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sl~i~ 223 (323)
++| + ..++..+..+ ++|+.+++..|.. ...++...+..+.+ . ..+|.||.....-..+.+.
T Consensus 205 s~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l-~-----~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-Y-----GTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CSSEEEECCGGGCCTT--SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC-E-----ECCCGGGGGCTTCCEEECC
T ss_pred cCCcccCcCCHHHhcC--CCCCEEECCCCceeeecCcccccCCCCEEECcCCcc-c-----CcCChHHhcCcCCCEEECc
Confidence 777 6 4444444444 4455554444311 01111222333333 1 2578888776655555543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=2.6e-17 Score=168.89 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=108.2
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|++++|++.+.+|..++++++|++|++++|...+.+|..+..+. ..++++|...+.+|..++++++|++|++++|.
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 378999998889999999999999999999999889998765544 44566777667889999999999999999999
Q ss_pred CCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+.+.+|..++.+++|++|++++|.+. .+|..++.++ +|+.|+++ +|.
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls-~N~ 549 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLN-TNL 549 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECC-SSE
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECC-CCc
Confidence 99999999999999999999999984 7899999999 99999998 775
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=3.6e-17 Score=167.82 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=66.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|.+.+.+|..++.+++|++|++++|...+.+|..+..+. ..++++|...+.+|..++++++|++|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 56667766666676666677777777777666666665544333 333455554456666666666666666666666
Q ss_pred CCCCCcccCCCcccceeecccccc-ccCChhH
Q 039239 79 IQKLPHELGNLEALNSLYAKGIAT-TEVPSSV 109 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i 109 (323)
.+.+|..++.+++|++|++++|.+ +.+|..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 666666666666666666666665 3455443
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2.1e-16 Score=142.84 Aligned_cols=176 Identities=22% Similarity=0.198 Sum_probs=111.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~ 77 (323)
|++++|++.+..+..+..+++|++|++++|...+..|..+..+. ..+++++..++.+ |..+.++++|++|++++|.
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence 67888876555556678888888888888766655565555443 3345565556666 5567788888888888887
Q ss_pred CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCC-----CC--cceecC---------c
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQM-----GL--LLPITL---------S 140 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~-----~~--L~~l~L---------~ 140 (323)
+.+..|..++.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|...... .. |+.+++ +
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLH-GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECC-CCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 777777778888888888888888877654 466777 88888888 66621100 00 222222 2
Q ss_pred cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
..+.++++|++|++++| + .+|+..+..+ ++|+.+++..|
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N 235 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDN 235 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSS
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccC--cccCEEeccCC
Confidence 33455555666666665 5 5554334333 45555555554
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=2e-16 Score=142.97 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=119.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSL-PSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~ 77 (323)
++.+++. +..+|..+ .++|++|++++|...+..+..+..+. + .+++++ .+..+ |..+.++++|++|++++|.
T Consensus 16 ~~c~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 16 TSCPQQG-LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EECCSSC-CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCcCC-cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 4555544 67788654 57999999999876665555555443 3 345554 45555 7789999999999999998
Q ss_pred CCCCC-CcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239 78 NIQKL-PHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155 (323)
Q Consensus 78 ~~~~l-p~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls 155 (323)
..+.+ |..+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|. ++.+. +..++.+++|++|+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQ-DNA-------LQALP-DDTFRDLGNLTHLFLH 161 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECC-CCc-------ccccC-HhHhccCCCccEEECC
Confidence 44444 78899999999999999999877 66788899 99999999 887 55441 2346777888888888
Q ss_pred CC-c-ccCccccccccchhhhhhhhhhh
Q 039239 156 GN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 156 ~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+| + .+|+..+..+ .+|+.+++..|
T Consensus 162 ~n~l~~~~~~~~~~l--~~L~~L~l~~n 187 (285)
T 1ozn_A 162 GNRISSVPERAFRGL--HSLDRLLLHQN 187 (285)
T ss_dssp SSCCCEECTTTTTTC--TTCCEEECCSS
T ss_pred CCcccccCHHHhcCc--cccCEEECCCC
Confidence 88 7 7765444444 55555554444
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=4.3e-17 Score=163.94 Aligned_cols=164 Identities=17% Similarity=0.180 Sum_probs=108.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCC------Cc----------------------------------------
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSK------LK---------------------------------------- 35 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~------l~---------------------------------------- 35 (323)
|+|++|.+.|.+|+.+++|++|++|+|++|.. .+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 78999999999999999999999999999843 11
Q ss_pred -------------------------------cCCCCcCCcc---hhhhcCcccccc------------------cccccc
Q 039239 36 -------------------------------RLPEFSSAGN---IEEICGCKRLKS------------------LPSSIC 63 (323)
Q Consensus 36 -------------------------------~~p~~~~~l~---l~~L~~~~~l~~------------------lP~~i~ 63 (323)
.+|+.++.+. ..+++++. +.. +|+.++
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhh
Confidence 1343333332 22334443 333 666666
Q ss_pred --CCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc-cc--cCChhHHhc------ccccceeEccCCCCCCCCCC
Q 039239 64 --KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA-TT--EVPSSVVRL------NNKLYELSSDRSRRGDKQMG 132 (323)
Q Consensus 64 --~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~-i~--~lP~~i~~l------~~~L~~L~l~~~n~~~~~~~ 132 (323)
++++|++|++++|.+.+.+|..++++++|++|++++|. ++ .+|..++.+ + +|+.|+++ +|.
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~-~n~------ 316 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIG-YNN------ 316 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECC-SSC------
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECC-CCc------
Confidence 67777777777776666777667777777777777776 54 466666665 5 67777776 665
Q ss_pred CcceecCcc--ccccCCCCCeecCCCC-c--ccCccccccccchhhhhhhhhhh
Q 039239 133 LLLPITLSI--DGLHMTDLRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 133 ~L~~l~L~~--~l~~l~~L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
++. +|. .++++++|++|++++| + .+| .+..+ .+|+.+++..|
T Consensus 317 -l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l--~~L~~L~L~~N 363 (636)
T 4eco_A 317 -LKT--FPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE--IKLASLNLAYN 363 (636)
T ss_dssp -CSS--CCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE--EEESEEECCSS
T ss_pred -CCc--cCchhhhccCCCCCEEeCcCCcCccchh--hhCCC--CCCCEEECCCC
Confidence 553 366 6778888888888888 6 676 44443 45555554444
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=6.9e-16 Score=138.58 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=100.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n 76 (323)
|+|++|++.+..+..+.++++|++|++++|... .+|. .+..+. ++ ++++ +.+..+|. .+.++++|++|++++|
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccCCCEEECCCC
Confidence 566666644433345666777777777775443 3333 223222 22 2333 33555554 3466777777777777
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls 155 (323)
.+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..+..+++|++|+++
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLY-NNQ-------LKRVP-EGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc-ccceeEec-CCc-------CcEeC-hhHhccCCCcCEEECC
Confidence 66666666667777777777777777666543 56666 77777777 666 44441 2346777888888888
Q ss_pred CC-c-ccCccccccccchhhhhhhhhhh
Q 039239 156 GN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 156 ~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+| + .+|+..+..+ .+|+.+++..|
T Consensus 190 ~N~l~~~~~~~~~~l--~~L~~L~l~~N 215 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSL--EKLKMLQLQEN 215 (270)
T ss_dssp SSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred CCcCCcCCHHHhccc--cCCCEEEecCC
Confidence 88 7 7775545544 56666666555
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=9.9e-17 Score=147.42 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=87.9
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCC-CCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLK-SLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~-~L~~L~Ls~n 76 (323)
+|+|++|++.+.+|..++++++|++|+|++|...+.+|..+..+. + .++++|...+.+|..+++++ +|++|++++|
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 377888887778888888888888888888877777776655443 3 33445444447777777777 7888888887
Q ss_pred CCCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+.+.+|..++.++ |++|++++|.++ .+|..+..++ +|+.|+++ +|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~ 232 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLA-KNS 232 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-CCSEEECC-SSE
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-CCCEEECC-CCc
Confidence 77777777777776 777777777774 4566666777 77777777 665
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=9.2e-17 Score=161.50 Aligned_cols=167 Identities=14% Similarity=0.210 Sum_probs=137.8
Q ss_pred CEEecCCCCCCc-----------------CCcccC--CCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccc--
Q 039239 1 MLDLSDCKSLKS-----------------LPAEIS--NLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLK-- 56 (323)
Q Consensus 1 ~L~Ls~n~~l~~-----------------lP~~i~--~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~-- 56 (323)
+|+|++|.+.+. +|..++ ++++|++|+|++|...+.+|+.++.+. ..++++|..+.
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 489999997775 999999 999999999999999999998877665 44566776354
Q ss_pred cccccccCC------CCCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCCC
Q 039239 57 SLPSSICKL------KSLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRG 127 (323)
Q Consensus 57 ~lP~~i~~L------~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~ 127 (323)
.+|..++++ ++|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .+..++ +|+.|+++ +|.
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~-~N~- 364 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLA-YNQ- 364 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECC-SSE-
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECC-CCc-
Confidence 699988887 99999999999877 8998 8999999999999999997 999 899999 99999999 888
Q ss_pred CCCCCCcceecCccccccCCC-CCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 128 DKQMGLLLPITLSIDGLHMTD-LRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 128 ~~~~~~L~~l~L~~~l~~l~~-L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+..+ |..+..+++ |++|++++| + .+|. .+..+...+|+.+++..|
T Consensus 365 ------l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 365 ------ITEI--PANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ------EEEC--CTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSS
T ss_pred ------cccc--cHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCC
Confidence 7744 888999999 999999999 8 8883 333222234555555444
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=8.2e-16 Score=141.78 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=74.1
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|++.+..+..++++++|++|+|++|...+..|..+..+. ++. +++ +.++.+|..+. ++|++|++++|.+
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCCcc
Confidence 67777775554444677777777777777666555565554433 332 333 34556666553 5677777777666
Q ss_pred CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+..+..+..+++|++|++++|.++ ..|..+..++ +|+.|+++ +|.
T Consensus 134 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~-~n~ 182 (330)
T 1xku_A 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIA-DTN 182 (330)
T ss_dssp CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECC-SSC
T ss_pred cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECC-CCc
Confidence 5555555666777777777777664 3355666666 67777776 555
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.5e-15 Score=134.88 Aligned_cols=164 Identities=23% Similarity=0.257 Sum_probs=124.0
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~ 77 (323)
++++++. +..+|..+. ++++.|+|++|...+..+..+..+. + .+++++ .+..++ ..+.++++|++|++++|.
T Consensus 19 l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 19 VDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence 5666665 667887665 6889999999877666665554443 3 344554 455554 457889999999999998
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..++.+++|++|+|++
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~-~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLN-TNQ-------LQSIP-AGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCS
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECc-CCc-------CCccC-HHHcCcCcCCCEEECCC
Confidence 8877777888999999999999999888765 57788 99999999 887 66552 23678899999999999
Q ss_pred C-c-ccCccccccccchhhhhhhhhhh
Q 039239 157 N-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 157 N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
| + .+|+..+..+ .+|+.+++..|
T Consensus 165 N~l~~~~~~~~~~l--~~L~~L~l~~N 189 (251)
T 3m19_A 165 NQLQSVPHGAFDRL--GKLQTITLFGN 189 (251)
T ss_dssp SCCSCCCTTTTTTC--TTCCEEECCSC
T ss_pred CcCCccCHHHHhCC--CCCCEEEeeCC
Confidence 9 8 8886666666 77777777666
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.4e-16 Score=165.11 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEee-eCCCCCccCCCCcC--------------------------------------
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNL-SGCSKLKRLPEFSS-------------------------------------- 42 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~L-s~c~~l~~~p~~~~-------------------------------------- 42 (323)
|+|++|.+.|.+|+.+++|++|++|+| ++|...+..|-...
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 789999988999999999999999999 66543333211100
Q ss_pred --------------Ccchhhh--c-CccccccccccccCCCCCCEEEeeCCCCCC-----------------CCCcccC-
Q 039239 43 --------------AGNIEEI--C-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQ-----------------KLPHELG- 87 (323)
Q Consensus 43 --------------~l~l~~L--~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~-----------------~lp~~l~- 87 (323)
.+.+.++ . .++.+..+|+.++++++|++|+|++|.+.+ .+|+.++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 0001111 1 123444467667777777777777776666 2666666
Q ss_pred -CCcccceeecccccc-ccCChhHHhcccccceeEccCCCC-CC---CCC----------C--Cccee--------cCcc
Q 039239 88 -NLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRR-GD---KQM----------G--LLLPI--------TLSI 141 (323)
Q Consensus 88 -~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~-~~---~~~----------~--~L~~l--------~L~~ 141 (323)
++++|++|++++|.+ +.+|..+++++ +|+.|+++ +|. .. .+. . -|+.+ .+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIA-CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECT-TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECc-CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 677777777777664 56666677776 77777776 554 11 000 0 01222 2244
Q ss_pred --ccccCCCCCeecCCCC-c-ccC
Q 039239 142 --DGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 142 --~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
.++++++|++|++++| + .+|
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC
T ss_pred hhhhhcCCCCCEEECCCCCcccch
Confidence 5667777777777777 6 666
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=9.2e-16 Score=139.60 Aligned_cols=164 Identities=22% Similarity=0.180 Sum_probs=116.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|+|++|++.+..|..+..+++|++|+|++|... .++.......++ ++++ +.++.+|..+.++++|++|++++|.+.
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCcCc
Confidence 677888766555667788888888888886543 344332111233 3444 467788888888888899999888877
Q ss_pred CCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N 157 (323)
+..|..|+.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+ + ..+..+++|++|++++|
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLA-NNN-------LTEL--PAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECT-TSC-------CSCC--CTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECC-CCc-------CCcc--CHHHhcCcCCCCEEECCCC
Confidence 66667788888899999999888877654 46777 88889888 787 6655 4 34577899999999999
Q ss_pred -c-ccCccccccccchhhhhhhhhhh
Q 039239 158 -F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 -l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+|. .+... .+|+.+.+..|
T Consensus 183 ~l~~ip~-~~~~~--~~L~~l~L~~N 205 (290)
T 1p9a_G 183 SLYTIPK-GFFGS--HLLPFAFLHGN 205 (290)
T ss_dssp CCCCCCT-TTTTT--CCCSEEECCSC
T ss_pred cCCccCh-hhccc--ccCCeEEeCCC
Confidence 8 8873 22222 45666666665
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=1.7e-15 Score=145.87 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=85.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++ ++++ +.+..+|+. +.++++|++|+|++|.
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEECCCCC
Confidence 67777776655566677777777777777655554444444332 22 3333 335555543 5666677777777766
Q ss_pred CCCCCCcccCCCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls 155 (323)
+....+..+.++++|++|++++ +.++.+|. .+..++ +|+.|+++ +|. ++.+ ..+..+++|++|+++
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~-~n~-------l~~~---~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLG-MCN-------IKDM---PNLTPLVGLEELEMS 226 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECT-TSC-------CSSC---CCCTTCTTCCEEECT
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECC-CCc-------cccc---ccccccccccEEECc
Confidence 5544444566666666666666 33455543 455566 66666666 555 3322 134455555555555
Q ss_pred CC-c-ccCcccccc
Q 039239 156 GN-F-KLDRKEVRG 167 (323)
Q Consensus 156 ~N-l-~lP~~~L~~ 167 (323)
+| + .+++..+..
T Consensus 227 ~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 227 GNHFPEIRPGSFHG 240 (452)
T ss_dssp TSCCSEECGGGGTT
T ss_pred CCcCcccCcccccC
Confidence 55 4 444333333
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=4.8e-15 Score=131.63 Aligned_cols=147 Identities=22% Similarity=0.192 Sum_probs=120.2
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n 76 (323)
.|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++ ++++ +.++.+|. .+..+++|++|++++|
T Consensus 39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCCCEEEcCCC
Confidence 389999998777777899999999999999877776666555443 33 4455 45666664 5789999999999999
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls 155 (323)
.+.+..+..++.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|. ++.+. +..+..+++|++|+++
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLS-TNQ-------LQSVP-HGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-CCCEEECC-CCc-------CCccC-HHHHhCCCCCCEEEee
Confidence 8876666668999999999999999998876 688899 99999999 888 66552 2467889999999999
Q ss_pred CC-c
Q 039239 156 GN-F 158 (323)
Q Consensus 156 ~N-l 158 (323)
+| +
T Consensus 188 ~N~~ 191 (251)
T 3m19_A 188 GNQF 191 (251)
T ss_dssp SCCB
T ss_pred CCce
Confidence 99 7
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=143.37 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=61.5
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCC-C----CC--
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQ-M----GL-- 133 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~-~----~~-- 133 (323)
+.++++|++|++++|+..+.++. .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|..... + ++
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~-~L~~L~Ls-~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI-KLDELDLS-GNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS-SCCEEECT-TSCCCEECTTTTTTCTT
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc-ccCEEECC-CCccCccChhhhccCcc
Confidence 44444455555544444444433 34555555555555555555542 44455 55555555 4441110 0 00
Q ss_pred cceecC---------ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhhh
Q 039239 134 LLPITL---------SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAAA 182 (323)
Q Consensus 134 L~~l~L---------~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n~ 182 (323)
|+.+++ +..+.++++|++|+|++| + .+|+..+..+ .+|+.+++..|+
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL--HHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC--TTCCEEECCSSC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc--cCCCEEEcCCCC
Confidence 222222 234667777788888877 7 7775555555 677777777773
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.7e-15 Score=149.59 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=82.7
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSS-ICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n 76 (323)
+|+|++|.+.+..|..++.+++|++|+|++|...+..|..++.+. + +++++| .+..+|+. ++++++|++|++++|
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence 377888876666666788888888888888776665555555444 3 334443 56677766 478888888888888
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
.+.+..|..++.+++|++|++++|.++.++ +..++ +|+.|+++
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~-~L~~L~l~ 200 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP-SLFHANVS 200 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCT-TCSEEECC
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhh-hhhhhhcc
Confidence 887777777888888888888888887664 33444 55555554
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=142.77 Aligned_cols=106 Identities=25% Similarity=0.276 Sum_probs=61.6
Q ss_pred hcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCC
Q 039239 49 ICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 49 L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~ 126 (323)
+++|+.++.++. .+.++++|++|++++|.+. .+| .+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~n~ 242 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMI-QSQ 242 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECT-TCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-cCCEEECC-CCc
Confidence 344555555555 3566666666666666443 444 355666666666666666544 45555555 66666665 444
Q ss_pred CCCC-----CCC--cceecCc---------cccccCCCCCeecCCCC-c
Q 039239 127 GDKQ-----MGL--LLPITLS---------IDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 127 ~~~~-----~~~--L~~l~L~---------~~l~~l~~L~~L~Ls~N-l 158 (323)
.... ..+ |+.+++. ..+..+++|+.|+|++| +
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 2110 011 3333332 34678999999999999 6
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.1e-14 Score=130.78 Aligned_cols=164 Identities=22% Similarity=0.233 Sum_probs=120.6
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCcccccccccc-ccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|. ++.++. ++.+++|++|++++|...+ ++.+.....++ ++++| .++.+|+. +.++++|++|++++|.+
T Consensus 46 L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 46 IIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp EECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeCCCC-cccccc-cccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcC
Confidence 6777776 455664 7889999999999976544 44332222233 34454 55666654 68899999999999988
Q ss_pred CCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..++.+++|++|++++|
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLS-YNQ-------LQSLP-EGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECC-CCC-------cCccC-HHHhcCCccCCEEECCCC
Confidence 877777789999999999999999887654 57888 99999999 887 66542 234678899999999999
Q ss_pred -c-ccCccccccccchhhhhhhhhhh
Q 039239 158 -F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 -l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+|+..+..+ ++|+.+++..|
T Consensus 192 ~l~~~~~~~~~~l--~~L~~L~l~~N 215 (272)
T 3rfs_A 192 QLKSVPDGVFDRL--TSLQYIWLHDN 215 (272)
T ss_dssp CCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred cCCccCHHHHhCC--cCCCEEEccCC
Confidence 8 7776555555 66777766665
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=5.7e-16 Score=160.44 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=121.1
Q ss_pred CEEecCCCCCC-----------------cCCcccC--CCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccc--
Q 039239 1 MLDLSDCKSLK-----------------SLPAEIS--NLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLK-- 56 (323)
Q Consensus 1 ~L~Ls~n~~l~-----------------~lP~~i~--~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~-- 56 (323)
+|+|++|.+.+ .+|..++ ++++|++|+|++|...+.+|..++.+. ..++++|..+.
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 38899999777 3999888 999999999999999999998776654 34456665344
Q ss_pred cccccccCCC-------CCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCC
Q 039239 57 SLPSSICKLK-------SLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRG 127 (323)
Q Consensus 57 ~lP~~i~~L~-------~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~ 127 (323)
.+|..+++++ +|++|++++|.+. .+|. .++++++|++|++++|.++.+| .+..++ +|+.|+++ +|.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-~L~~L~Ls-~N~- 606 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNV-KLTDLKLD-YNQ- 606 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTS-EESEEECC-SSC-
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCC-cceEEECc-CCc-
Confidence 5888776665 9999999998877 8888 8999999999999999998888 888888 99999998 887
Q ss_pred CCCCCCcceecCccccccCCC-CCeecCCCC-c-ccC
Q 039239 128 DKQMGLLLPITLSIDGLHMTD-LRHFDLSGN-F-KLD 161 (323)
Q Consensus 128 ~~~~~~L~~l~L~~~l~~l~~-L~~L~Ls~N-l-~lP 161 (323)
+.. +|..+..+++ |++|++++| + .+|
T Consensus 607 ------l~~--lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 607 ------IEE--IPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp ------CSC--CCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred ------ccc--chHHHhhccccCCEEECcCCCCCcCc
Confidence 663 3777788888 888888888 7 777
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=4.2e-15 Score=143.08 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=93.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~ 77 (323)
|+|++|++.+..|..+.++++|++|+|++|...+..+..+..+. ++ ++++ +.+..+|. .+.++++|++|++++|+
T Consensus 104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCC
Confidence 67777776555556677777777777777654433333333322 22 2223 23334433 34444555555555444
Q ss_pred CCCCCCc-----------------------ccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCC
Q 039239 78 NIQKLPH-----------------------ELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGL 133 (323)
Q Consensus 78 ~~~~lp~-----------------------~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~ 133 (323)
.++.++. .+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.
T Consensus 183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~n~------- 253 (452)
T 3zyi_A 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVM-NSQ------- 253 (452)
T ss_dssp TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECT-TSC-------
T ss_pred CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCcc-CCCEEEeC-CCc-------
Confidence 4444433 244444555555555555433 34455555 55555555 444
Q ss_pred cceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 134 LLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 134 L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+..+. +..+..+++|++|+|++| + .+|+..+..+ .+|+.+++..|
T Consensus 254 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N 300 (452)
T 3zyi_A 254 VSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPL--RYLVELHLHHN 300 (452)
T ss_dssp CCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTC--TTCCEEECCSS
T ss_pred CceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccc--cCCCEEEccCC
Confidence 44332 355778888999999988 8 8876555555 67777777766
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=5.7e-15 Score=132.77 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=107.0
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSS-ICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n 76 (323)
+|++++|++.+ ++ .++.+++|++|++++|...+..+..++.+. + .++++| .+..+|+. ++++++|++|++++|
T Consensus 67 ~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 67 YLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC
Confidence 37888888544 44 588899999999999866655555444433 3 344554 45566554 688899999999998
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls 155 (323)
.+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..+..+++|++|+++
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLY-QNQ-------LKSVP-DGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECC-CCc-------CCccC-HHHHhCCcCCCEEEcc
Confidence 87766666678899999999999998877654 57788 89999998 887 55542 2446788999999999
Q ss_pred CC-c
Q 039239 156 GN-F 158 (323)
Q Consensus 156 ~N-l 158 (323)
+| +
T Consensus 214 ~N~~ 217 (272)
T 3rfs_A 214 DNPW 217 (272)
T ss_dssp SSCB
T ss_pred CCCc
Confidence 99 6
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=3.6e-15 Score=143.01 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=24.5
Q ss_pred EEecCCCCCCcCCcc-cCCCCCCCEEeeeCCCCCccCCCC
Q 039239 2 LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPEF 40 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~-i~~L~~L~~L~Ls~c~~l~~~p~~ 40 (323)
|+|++|.+.+..|.. ++++++|++|++++|...+..|..
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 566777655555554 566777777777776655554443
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=9.5e-15 Score=132.88 Aligned_cols=162 Identities=20% Similarity=0.193 Sum_probs=116.6
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
+++++++ +..+|..+. ++++.|+|++|...+..|..+..+. ++. +++ +.+..+|.. +.+++|++|++++|.+
T Consensus 15 l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 15 VNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred EECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCCcC
Confidence 5677766 567787664 7889999999776655555554443 333 334 456677664 7788899999988765
Q ss_pred CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
..+|..+..+++|++|++++|.++.+| ..+..++ +|+.|+++ +|. ++.+. +..+..+++|+.|++++|
T Consensus 90 -~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 90 -QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLK-GNE-------LKTLP-PGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp -SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECT-TSC-------CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred -CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECC-CCC-------CCccC-hhhcccccCCCEEECCCC
Confidence 477888888889999999999988776 5678888 89999998 787 66552 244678889999999999
Q ss_pred -c-ccCccccccccchhhhhhhhhhh
Q 039239 158 -F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 -l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+|+..+..+ .+|+.+++..|
T Consensus 159 ~l~~l~~~~~~~l--~~L~~L~L~~N 182 (290)
T 1p9a_G 159 NLTELPAGLLNGL--ENLDTLLLQEN 182 (290)
T ss_dssp CCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred cCCccCHHHhcCc--CCCCEEECCCC
Confidence 8 8886555555 56666655444
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=7.4e-15 Score=135.57 Aligned_cols=119 Identities=19% Similarity=0.148 Sum_probs=74.3
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|.+.+..|..+.++++|++|++++|...+..|..++.+. ++ ++++ +.++.+|..+. ++|++|++++|.+
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCCcc
Confidence 67888875555566678888888888888776665565555443 33 3333 34566776654 6777777777666
Q ss_pred CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+..+..++.+++|++|++++|.++ ..|..+..+ +|+.|+++ +|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~-~n~ 183 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRIS-EAK 183 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCC-SSB
T ss_pred CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECc-CCC
Confidence 5544455677777777777777664 224444433 56666666 554
No 28
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=5.7e-15 Score=128.90 Aligned_cols=143 Identities=21% Similarity=0.320 Sum_probs=101.1
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~ 80 (323)
++++++. +..+|..+. ++|+.|++++|. +..+|+ .+.++++|++|+|++|.+.+
T Consensus 16 v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~----------------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~ 70 (220)
T 2v9t_B 16 VDCRGKG-LTEIPTNLP--ETITEIRLEQNT----------------------IKVIPPGAFSPYKKLRRIDLSNNQISE 70 (220)
T ss_dssp EECTTSC-CSSCCSSCC--TTCCEEECCSSC----------------------CCEECTTSSTTCTTCCEEECCSSCCCE
T ss_pred EEcCCCC-cCcCCCccC--cCCCEEECCCCc----------------------CCCcCHhHhhCCCCCCEEECCCCcCCC
Confidence 4566655 667787654 788889888853 334443 46677788888888887777
Q ss_pred CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
..|..|..+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..+..+++|++|+|++| +
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-SLQLLLLN-ANK-------INCLR-VDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-CCCEEECC-CCC-------CCEeC-HHHcCCCCCCCEEECCCCcC
Confidence 7777788888888888888888777665 45677 88888888 776 55542 356777788888888888 7
Q ss_pred -ccCccccccccchhhhhhhhhhh
Q 039239 159 -KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 159 -~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.+|+..+..+ .+|+.+++..|
T Consensus 141 ~~~~~~~~~~l--~~L~~L~L~~N 162 (220)
T 2v9t_B 141 QTIAKGTFSPL--RAIQTMHLAQN 162 (220)
T ss_dssp SCCCTTTTTTC--TTCCEEECCSS
T ss_pred CEECHHHHhCC--CCCCEEEeCCC
Confidence 7775555555 66666666665
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=4.9e-15 Score=139.68 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=72.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
|++++|.+.+..|..++.+++|++|+|++|...+..|..++.+. ++ ++++ +.++.+|.. +.++++|++|++++|.
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCc
Confidence 66777765444445667777777777777665555555444433 33 3333 345666665 3667777777777777
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
+.+..|..++.+++|++|++++|.++.++ +..++ +|+.|+++
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~-~L~~L~l~ 194 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP-SLFHANVS 194 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCT-TCSEEECC
T ss_pred cCccChhhccCCCCCCEEECCCCcCCccc--ccccc-ccceeecc
Confidence 66666666777777777777777776554 33444 55555554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=142.69 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=57.5
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccc-------------------
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLP------------------- 59 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP------------------- 59 (323)
|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++ ++++ +.+..+|
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCc
Confidence 55666654444445555566666666666544444444333322 21 1222 2233333
Q ss_pred ------ccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEcc
Q 039239 60 ------SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSD 122 (323)
Q Consensus 60 ------~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~ 122 (323)
..+.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|. .+..++ +|+.|+++
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~ 184 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLR 184 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEE
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC-CCcEEeCC
Confidence 344444555555555554444444455555555555555555554443 344444 55555555
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=5.3e-15 Score=132.90 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=95.5
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n 76 (323)
+|++++|++.+..+..+.++++|++|++++|...+..+..+..+. + .+++++ .+..++ ..+.++++|++|++++|
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCC
Confidence 378999986655555788999999999999866555454444433 3 344554 455554 56889999999999998
Q ss_pred CCCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+.+..+..++.+++|++|++++|.++. +|..+..++ +|+.|+++ +|.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls-~N~ 160 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLS-SNK 160 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECC-SSC
T ss_pred CccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECC-CCC
Confidence 8877766678999999999999999975 688999998 99999999 887
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=2.6e-15 Score=143.99 Aligned_cols=105 Identities=16% Similarity=0.087 Sum_probs=71.4
Q ss_pred CEEecCCCCCCcC-CcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccccc--ccCCCCCCEEEee
Q 039239 1 MLDLSDCKSLKSL-PAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSS--ICKLKSLKVLNLD 74 (323)
Q Consensus 1 ~L~Ls~n~~l~~l-P~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~--i~~L~~L~~L~Ls 74 (323)
+|++++|...+.+ |..+.++++|++|+|++|...+..|..++.+. ..++++|.-.+.+|.. +.++++|++|+++
T Consensus 58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137 (455)
T ss_dssp EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence 3778888776666 45577888888888888877776676665544 3334555433344444 7777778888888
Q ss_pred CCCCCCCCCcc-cCCCcccceeeccccccccC
Q 039239 75 GCSNIQKLPHE-LGNLEALNSLYAKGIATTEV 105 (323)
Q Consensus 75 ~n~~~~~lp~~-l~~l~~L~~L~L~~n~i~~l 105 (323)
+|.+.+..|.. ++++++|++|++++|.++.+
T Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77777666665 67777777777777777543
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=4.7e-15 Score=133.26 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=118.1
Q ss_pred CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcc
Q 039239 10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHE 85 (323)
Q Consensus 10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~ 85 (323)
+..+|..+. ++|++|++++|...+..+..+..+. + .++++| .+..++. .+.++++|++|++++|.+.+..+..
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 556887664 6899999999876655554554443 3 345554 5666655 6889999999999999988888888
Q ss_pred cCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc
Q 039239 86 LGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR 162 (323)
Q Consensus 86 l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~ 162 (323)
+.++++|++|++++|.+..++. .+..++ +|+.|+++ +|. ++.+.+|..++++++|++|++++| + .+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVA-HNL-------IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECC-SSC-------CCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred hcCCccccEEECCCCCccccCchhcccCC-CCCEEECc-CCc-------cceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999999999999999987765 688898 99999999 888 777667888999999999999999 8 8876
Q ss_pred cccccc
Q 039239 163 KEVRGI 168 (323)
Q Consensus 163 ~~L~~L 168 (323)
..+..+
T Consensus 167 ~~~~~l 172 (276)
T 2z62_A 167 TDLRVL 172 (276)
T ss_dssp GGGHHH
T ss_pred HHhhhh
Confidence 555544
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=2e-15 Score=137.61 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=99.9
Q ss_pred EEecCCCCCCcCCcc-cCCCCCCCEEeeeCCCCCcc--CCCCc---CCcchhhhcCccccccccccccCCCCCCEEEeeC
Q 039239 2 LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKR--LPEFS---SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDG 75 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~-i~~L~~L~~L~Ls~c~~l~~--~p~~~---~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~ 75 (323)
|++++|++ +.+|.. +.++++|++|+|++|..... .|... ..++..++++ +.+..+|..+.++++|++|++++
T Consensus 33 L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 33 LELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTT
T ss_pred EECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEEECCC
Confidence 67777774 455544 56788888888887654421 12211 1122223333 34556677777777777777777
Q ss_pred CCCCCCCC-cccCCCcccceeecccccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeec
Q 039239 76 CSNIQKLP-HELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFD 153 (323)
Q Consensus 76 n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~ 153 (323)
|.+.+..+ ..+..+++|++|++++|.++. .|..+..++ +|+.|+++ +|. +....+|..+..+++|++|+
T Consensus 111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMA-GNS-------FQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECT-TCE-------EGGGEECSCCTTCTTCCEEE
T ss_pred CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECC-CCc-------cccccchhHHhhCcCCCEEE
Confidence 66554433 456777777777777777753 345566666 77777777 665 44312255667777777777
Q ss_pred CCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 154 LSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 154 Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+++| + .+++..+..+ ++|+.+++..|
T Consensus 182 Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N 209 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSL--SSLQVLNMSHN 209 (306)
T ss_dssp CTTSCCCEECTTTTTTC--TTCCEEECTTS
T ss_pred CCCCCcCCcCHHHhcCC--CCCCEEECCCC
Confidence 7777 6 6654444444 45555554444
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=8.4e-15 Score=134.96 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=127.7
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-CcchhhhcCccccccccc-cccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~ 78 (323)
+|++++|++.+..|..++++++|++|++++|. +..+|.... .++..+++++ .+..++. .+.++++|++|++++|.+
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcC
Confidence 48999999777779889999999999999976 446765433 3333445554 4555554 588999999999999987
Q ss_pred CC--CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 79 IQ--KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 79 ~~--~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
.. ..+..++.+++|++|++++|.++.+|..+. + +|+.|+++ +|. ++.+. +..+..+++|++|++++
T Consensus 158 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P-SLTELHLD-GNK-------ITKVD-AASLKGLNNLAKLGLSF 225 (330)
T ss_dssp CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T-TCSEEECT-TSC-------CCEEC-TGGGTTCTTCCEEECCS
T ss_pred CccCcChhhccCCCCcCEEECCCCccccCCcccc--c-cCCEEECC-CCc-------CCccC-HHHhcCCCCCCEEECCC
Confidence 53 677889999999999999999999987664 5 99999999 887 66552 46788899999999999
Q ss_pred C-c-ccCccccccccchhhhhhhhhhh
Q 039239 157 N-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 157 N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
| + .+++..+..+ ++|+.+++..|
T Consensus 226 n~l~~~~~~~~~~l--~~L~~L~L~~N 250 (330)
T 1xku_A 226 NSISAVDNGSLANT--PHLRELHLNNN 250 (330)
T ss_dssp SCCCEECTTTGGGS--TTCCEEECCSS
T ss_pred CcCceeChhhccCC--CCCCEEECCCC
Confidence 9 8 7776566555 66666665444
No 36
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.7e-14 Score=126.64 Aligned_cols=142 Identities=25% Similarity=0.245 Sum_probs=88.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
++.++++ ++.+|..+. ++|++|+|++|...+..|..+..+. ++ ++++ +.++.+|.. +.++++|++|+|++|.
T Consensus 24 v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 24 VDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCc
Confidence 4555555 778887664 8999999999876665555443333 22 2333 334555543 4566667777777666
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+.+..+..+..+++|++|++++|.++.+|..+..++ +|+.|+++ +|. ++.+. +..+..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-HLTHLALD-QNQ-------LKSIP-HGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT-TCSEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCC-CCCEEECC-CCc-------CCccC-HHHHhCCCCCCEEEeeCC
Confidence 555444556666677777777777666666666666 67777776 665 44441 134566666777777766
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=1.7e-15 Score=138.98 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=105.9
Q ss_pred CEEecCCCCCCcCCccc--CCCCCCCEEeeeCCCCCccCCCCcCCc--------chhhhcCcccccccc-ccccCCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEI--SNLESLKKLNLSGCSKLKRLPEFSSAG--------NIEEICGCKRLKSLP-SSICKLKSLK 69 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i--~~L~~L~~L~Ls~c~~l~~~p~~~~~l--------~l~~L~~~~~l~~lP-~~i~~L~~L~ 69 (323)
+|+|++|++.+.+|..+ +.+++|++|+|++|...+. |..++.+ +..+++++. +..++ ..++++++|+
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALS 176 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCC
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCC
Confidence 37888888777888876 7889999999998776665 6544332 233445544 44454 6788889999
Q ss_pred EEEeeCCCCCCC--CCccc--CCCcccceeeccccccccCC---hh-HHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 70 VLNLDGCSNIQK--LPHEL--GNLEALNSLYAKGIATTEVP---SS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 70 ~L~Ls~n~~~~~--lp~~l--~~l~~L~~L~L~~n~i~~lP---~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
+|++++|.+.+. +|..+ +.+++|++|++++|.++.+| .. +..++ +|+.|+++ +|. ++...-..
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~~~~ 247 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLS-HNS-------LRDAAGAP 247 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECT-TSC-------CCSSCCCS
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECC-CCc-------CCcccchh
Confidence 999998887765 34444 78888999999999887443 23 34567 88999998 777 44432113
Q ss_pred ccccCCCCCeecCCCC-c-ccC
Q 039239 142 DGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
.+..+++|++|++++| + .+|
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCC
T ss_pred hhhhcCCCCEEECCCCccChhh
Confidence 4556788888888888 7 777
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.5e-14 Score=126.99 Aligned_cols=146 Identities=19% Similarity=0.143 Sum_probs=115.0
Q ss_pred CCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc
Q 039239 23 LKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA 101 (323)
Q Consensus 23 L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~ 101 (323)
.+.++.++ ..++.+|..+ ..+...+++++.--+..|..+.++++|++|+|++|.+.+..+..+..+++|++|++++|.
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 56788877 5677777643 344455666655444447778999999999999998755555667999999999999999
Q ss_pred cccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhh
Q 039239 102 TTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQL 178 (323)
Q Consensus 102 i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l 178 (323)
++.+|.. +..++ +|+.|+++ +|. ++.+ |..+..+++|++|++++| + .+|+..+..+ .+|+.+++
T Consensus 100 l~~l~~~~~~~l~-~L~~L~Ls-~N~-------l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l 166 (229)
T 3e6j_A 100 LTVLPSAVFDRLV-HLKELFMC-CNK-------LTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRL--SSLTHAYL 166 (229)
T ss_dssp CCCCCTTTTTTCT-TCCEEECC-SSC-------CCSC--CTTGGGCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEEEC
T ss_pred CCccChhHhCcch-hhCeEecc-CCc-------cccc--CcccccCCCCCEEECCCCcCCccCHHHHhCC--CCCCEEEe
Confidence 9988765 57888 99999999 888 7755 788899999999999999 8 8886666666 77888877
Q ss_pred hhhh
Q 039239 179 MAAA 182 (323)
Q Consensus 179 ~~n~ 182 (323)
..|+
T Consensus 167 ~~N~ 170 (229)
T 3e6j_A 167 FGNP 170 (229)
T ss_dssp TTSC
T ss_pred eCCC
Confidence 7763
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-15 Score=138.19 Aligned_cols=121 Identities=20% Similarity=0.153 Sum_probs=62.6
Q ss_pred EEecCCCCCC--cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccc--cccCCCCCCEEEee
Q 039239 2 LDLSDCKSLK--SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPS--SICKLKSLKVLNLD 74 (323)
Q Consensus 2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~--~i~~L~~L~~L~Ls 74 (323)
|++++|++.. ..|..+..+++|++|++++|... .+|..+..+. ++. +++ +.+..++. .+.++++|++|+++
T Consensus 57 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp EECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECT
T ss_pred EECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECC
Confidence 5666665432 22444445666666666665432 3443222222 222 222 23333432 45556666666666
Q ss_pred CCCCCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCC
Q 039239 75 GCSNIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+|.+.+..|..++.+++|++|++++|.+.. +|..+..++ +|+.|+++ +|.
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls-~n~ 186 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLS-QCQ 186 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECT-TSC
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECC-CCC
Confidence 665555555555566666666666666543 455555555 66666666 554
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.9e-14 Score=122.80 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=95.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
++.+++. +..+|..+ .++|++|++++|...+..+..+..+. ++. +++ +.++.+|.. +.++++|++|++++|.
T Consensus 12 v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCc
Confidence 3445544 55677654 46899999999765543333333332 333 333 355666654 5678888888888887
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+. +..+..+++|++|++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLY-QNQ-------LKSVP-DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECCS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-cCCEEECC-CCc-------cceeC-HHHhccCCCccEEEecC
Confidence 7665555677888888888888888777654 56777 88888888 776 55441 23467788888888888
Q ss_pred C-c
Q 039239 157 N-F 158 (323)
Q Consensus 157 N-l 158 (323)
| +
T Consensus 158 N~~ 160 (208)
T 2o6s_A 158 NPW 160 (208)
T ss_dssp CCB
T ss_pred CCe
Confidence 8 5
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.2e-14 Score=128.68 Aligned_cols=164 Identities=20% Similarity=0.204 Sum_probs=123.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
+++++++ ++.+|..+. ++|++|+|++|...+..+..+..+. ++ ++++ +.+..+|.. +.++++|++|++++|.
T Consensus 21 l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 21 VDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCc
Confidence 6777776 567887664 7899999999775544444454443 33 3444 456778776 4789999999999998
Q ss_pred CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
+.+..+..+..+++|++|++++|.++.+|. .+..++ +|+.|+++ +|. ++.+. +..++.+++|++|++++
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls-~n~-------l~~~~-~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLG-YNE-------LQSLP-KGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCS
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECC-CCc-------CCccC-HhHccCCcccceeEecC
Confidence 777666778899999999999999987764 567888 99999999 887 66552 23478899999999999
Q ss_pred C-c-ccCccccccccchhhhhhhhhhh
Q 039239 157 N-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 157 N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
| + .+|+..+..+ .+|+.+++..|
T Consensus 167 n~l~~~~~~~~~~l--~~L~~L~L~~N 191 (270)
T 2o6q_A 167 NQLKRVPEGAFDKL--TELKTLKLDNN 191 (270)
T ss_dssp SCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred CcCcEeChhHhccC--CCcCEEECCCC
Confidence 9 8 8886556555 66666665544
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=7e-15 Score=145.89 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=84.9
Q ss_pred CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcc
Q 039239 10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHE 85 (323)
Q Consensus 10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~ 85 (323)
+..+|..+. +++++|+|++|...+-.|..+..+. .++|++| .+..+|+ .|.++++|++|+|++|++.+..+..
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 445565442 4566666666543332233333322 2333443 4555544 4667777777777776655444455
Q ss_pred cCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc
Q 039239 86 LGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR 162 (323)
Q Consensus 86 l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~ 162 (323)
|+++++|++|++++|.++.+|. .++.++ +|+.|+++ +|. ++.+.+|..++.+++|++|++++| + .+++
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls-~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVA-HNL-------IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECC-SSC-------CCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCc-ccCeeccc-cCc-------cccCCCchhhccchhhhhhcccCcccccccc
Confidence 6777777777777777766654 466676 77777777 666 555555666667777777777777 6 5554
Q ss_pred cc
Q 039239 163 KE 164 (323)
Q Consensus 163 ~~ 164 (323)
..
T Consensus 191 ~~ 192 (635)
T 4g8a_A 191 TD 192 (635)
T ss_dssp GG
T ss_pred cc
Confidence 33
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=6.7e-15 Score=146.28 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=83.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|.+.+..+..++.+++|++|++++|. +..+|+.+..+. ++ ++++|......|..+.++++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 6788887666555668888888888888864 447776655443 33 3445433333355677788888888888777
Q ss_pred CCCCCcc-cCCCcccceeeccccccccC---ChhHHhcccccceeEccCCCC
Q 039239 79 IQKLPHE-LGNLEALNSLYAKGIATTEV---PSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 79 ~~~lp~~-l~~l~~L~~L~L~~n~i~~l---P~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+.+|.. ++.+++|++|++++|.+..+ |..+..++ +|+.|+++ +|.
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~-~n~ 387 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLS-YNE 387 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECC-SCS
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECC-CCc
Confidence 7666654 77777788888887777544 55677777 77777777 665
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=1.7e-14 Score=133.08 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=115.7
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCC--ccCCCCcCCcchhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKL--KRLPEFSSAGNIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l--~~~p~~~~~l~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|++.+..+..+.++++|++|++++|... +..|..+..++++.+. ..+.++.+|..+. ++|++|++++|.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcC
Confidence 566666644333344677777777777776553 2444444443433332 2244666777654 7899999999888
Q ss_pred CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+..|..+..+++|++|++++|.++.++ ..+..++ +|+.|+++ +|. ++.+ |..+..+++|++|++++|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--p~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLD-NNK-------LSRV--PAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECC-SSC-------CCBC--CTTGGGCTTCCEEECCSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECC-CCc-------Ceec--ChhhhcCccCCEEECCCC
Confidence 8877788999999999999999997775 4788888 99999999 887 6754 777889999999999999
Q ss_pred -c-ccCcccccccc----chhhhhhhhhhh
Q 039239 158 -F-KLDRKEVRGIF----EDALQDIQLMAA 181 (323)
Q Consensus 158 -l-~lP~~~L~~L~----~~sL~~l~l~~n 181 (323)
+ .+|+..+.... ..+++.+++..|
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCccChhHccccccccccccccceEeecC
Confidence 8 88754443321 134455554444
No 45
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=5.2e-15 Score=123.16 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCCCEEeeeCCCCC-ccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239 20 LESLKKLNLSGCSKL-KRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSL 95 (323)
Q Consensus 20 L~~L~~L~Ls~c~~l-~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L 95 (323)
.++|+.|++++|... +.+|..+..+. ..++++|. +..+ ..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777776433 23333221111 11111211 2233 334455555555555555544455444445555555
Q ss_pred eccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCcc----ccccCCCCCeecCCCC
Q 039239 96 YAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI----DGLHMTDLRHFDLSGN 157 (323)
Q Consensus 96 ~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~----~l~~l~~L~~L~Ls~N 157 (323)
++++|.++.+| ..+..++ +|+.|+++ +|. +..+ +. .+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~-~L~~L~l~-~N~-------l~~~--~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLE-CLKSLDLF-NCE-------VTNL--NDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCS-CCCEEECC-SSG-------GGTS--TTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCC-CCCEEEee-CCc-------Ccch--HHHHHHHHHhCccCcEecCCCC
Confidence 55555555443 4455555 55555555 444 3333 22 3445555555555555
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.2e-14 Score=124.38 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=70.2
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
.+..+++|++|++++|.+.+..|..++.+++|++|++++|.++. .|..+..++ +|+.|+++ +|.. +..+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~-~n~~------i~~~-- 152 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLS-YNGA------ITDI-- 152 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECC-SCTB------CCCC--
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC-CCCEEEcc-CCCC------cccc--
Confidence 46667777777777777766667777777777777777777753 566777777 77777777 6642 2333
Q ss_pred ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 140 SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+..+++|++|++++| + .++ .+..+ ++|+.+++..|
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l--~~L~~L~l~~N 191 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHDYR--GIEDF--PKLNQLYAFSQ 191 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCCCT--TGGGC--SSCCEEEECBC
T ss_pred H-hhcCCCCCCEEECCCCCCcChH--HhccC--CCCCEEEeeCc
Confidence 2 4667777777777777 6 654 34444 45555555444
No 47
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=125.57 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=86.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~ 81 (323)
+++++|. ++.+|..+. ..+++|+|++|...+..|. ..+.++++|++|++++|.+.+.
T Consensus 16 l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~--------------------~~~~~l~~L~~L~L~~N~i~~i 72 (220)
T 2v70_A 16 VDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEAT--------------------GIFKKLPQLRKINFSNNKITDI 72 (220)
T ss_dssp EECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCC--------------------CCGGGCTTCCEEECCSSCCCEE
T ss_pred eEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCch--------------------hhhccCCCCCEEECCCCcCCEE
Confidence 5677776 566777553 4567888888543332221 1245666666666666665555
Q ss_pred CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F- 158 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l- 158 (323)
.+..|+.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|. ++.+. +..+..+++|++|+|++| +
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLR-SNR-------ITCVG-NDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECT-TSC-------CCCBC-TTSSTTCTTCSEEECTTSCCC
T ss_pred CHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECC-CCc-------CCeEC-HhHcCCCccCCEEECCCCcCC
Confidence 55566666666666766666665543 355666 66666666 665 44431 345566666666666666 6
Q ss_pred ccCccccccccchhhhhhhhhhh
Q 039239 159 KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 159 ~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.+++..+..+ .+|+.+++..|
T Consensus 143 ~~~~~~~~~l--~~L~~L~L~~N 163 (220)
T 2v70_A 143 TVAPGAFDTL--HSLSTLNLLAN 163 (220)
T ss_dssp CBCTTTTTTC--TTCCEEECCSC
T ss_pred EECHHHhcCC--CCCCEEEecCc
Confidence 5554555544 55555555544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=140.18 Aligned_cols=144 Identities=23% Similarity=0.192 Sum_probs=67.6
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~ 77 (323)
|++++|++.+..+..+.++++|++|++++|...+..|..+..+. ++ ++++ +.++.+|.. ++++++|++|++++|.
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCCC
Confidence 45555553332233455566666666665544443343333322 22 2222 234444443 4555555555555554
Q ss_pred CCCCCCc--ccCCCcccceeeccccc-cccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeec
Q 039239 78 NIQKLPH--ELGNLEALNSLYAKGIA-TTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFD 153 (323)
Q Consensus 78 ~~~~lp~--~l~~l~~L~~L~L~~n~-i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~ 153 (323)
+. .+|. .++.+++|++|++++|. ++.+ |..+..++ +|+.|+++ +|. +... .+..++.+++|++|+
T Consensus 136 l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~-~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEID-ASD-------LQSY-EPKSLKSIQNVSHLI 204 (353)
T ss_dssp CS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEE-ETT-------CCEE-CTTTTTTCSEEEEEE
T ss_pred Cc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECC-CCC-------cCcc-CHHHHhccccCCeec
Confidence 33 2333 45555555555555552 4443 33455555 55555555 444 2222 123344455555555
Q ss_pred CCCC
Q 039239 154 LSGN 157 (323)
Q Consensus 154 Ls~N 157 (323)
+++|
T Consensus 205 l~~n 208 (353)
T 2z80_A 205 LHMK 208 (353)
T ss_dssp EECS
T ss_pred CCCC
Confidence 5555
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=9.1e-15 Score=145.29 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=107.1
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|+|++|.+.+..|..++++++|++|+|++|...+..|..++.+. + .++++|.-....|..++++++|++|++++|.
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 378888887666677788888888888888877776676655544 3 3445554334446678888888888888887
Q ss_pred CCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCC--eecC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLR--HFDL 154 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~--~L~L 154 (323)
+.+.-|..++++++|++|++++|.+..++ +.+..++ +|+.|+++ +|. ++.+. +..++.+++|+ .|++
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQ-NNA-------IHYLS-KEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-TCCEEECC-SSC-------CCEEC-HHHHHTTTTCCSEEEEC
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCc-ccCEEEcc-cCc-------ccccC-hhhhhhhcccceeEEec
Confidence 77665677888888888888888887652 3333477 88888888 776 45442 34567777777 7788
Q ss_pred CCC-c-ccCc
Q 039239 155 SGN-F-KLDR 162 (323)
Q Consensus 155 s~N-l-~lP~ 162 (323)
++| + .+++
T Consensus 187 ~~n~l~~~~~ 196 (606)
T 3t6q_A 187 NGNDIAGIEP 196 (606)
T ss_dssp TTCCCCEECT
T ss_pred CCCccCccCh
Confidence 888 6 5553
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=8.4e-15 Score=128.88 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=45.7
Q ss_pred cccccc-cccCCCCCCEEEeeC-CCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccc---eeEccCCC-CCC
Q 039239 55 LKSLPS-SICKLKSLKVLNLDG-CSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLY---ELSSDRSR-RGD 128 (323)
Q Consensus 55 l~~lP~-~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~---~L~l~~~n-~~~ 128 (323)
++.+|+ .+.++++|++|++++ |.+.+..+..+..+++|++|++++|.++.+|. +..++ +|+ .|+++ +| .
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~-~L~~L~~L~l~-~N~~-- 142 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY-STDIFFILEIT-DNPY-- 142 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC-BCCSEEEEEEE-SCTT--
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc-ccccccEEECC-CCcc--
Confidence 444443 344555555555554 33333333344555555555555555555554 44444 444 55555 44 3
Q ss_pred CCCCCcceecCccccccCCCCC-eecCCCC-c-ccC
Q 039239 129 KQMGLLLPITLSIDGLHMTDLR-HFDLSGN-F-KLD 161 (323)
Q Consensus 129 ~~~~~L~~l~L~~~l~~l~~L~-~L~Ls~N-l-~lP 161 (323)
++.+. +..+..+++|+ +|++++| + .+|
T Consensus 143 -----l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 143 -----MTSIP-VNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp -----CCEEC-TTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred -----hhhcC-cccccchhcceeEEEcCCCCCcccC
Confidence 33331 12344555555 5555555 4 444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.1e-15 Score=139.28 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHH-hcccccceeEccCCCCCCCCC--C------
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVV-RLNNKLYELSSDRSRRGDKQM--G------ 132 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~-~l~~~L~~L~l~~~n~~~~~~--~------ 132 (323)
+.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+. .++ +|+.|+++ +|...... .
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~-~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELR-DTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEE-SCBCTTCCCC------C
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECC-CCccccccccccccccc
Confidence 4444444444444444444444445555555555555555544443332 234 55555555 44411100 0
Q ss_pred --C-----cceec--------CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 133 --L-----LLPIT--------LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 133 --~-----L~~l~--------L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
. +..+. +|..+.++++|++|++++| + .+|+..+..+ ++|+.+++..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~L~~N 311 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL--TSLQKIWLHTN 311 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSS
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC--CCCCEEEeeCC
Confidence 0 11111 1234678899999999999 8 8885444555 77777777766
No 52
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=6.9e-15 Score=134.64 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=112.7
Q ss_pred CEEecCCCCCCcCCccc--CCCCCCCEEeeeCCCCCccCCCC-------cCCcchhhhcCccccccccccccCCCCCCEE
Q 039239 1 MLDLSDCKSLKSLPAEI--SNLESLKKLNLSGCSKLKRLPEF-------SSAGNIEEICGCKRLKSLPSSICKLKSLKVL 71 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i--~~L~~L~~L~Ls~c~~l~~~p~~-------~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L 71 (323)
+|++++|++.+..|..+ ..+++|++|+|++|...+..+.. ...++..++++|.-....|..++++++|++|
T Consensus 95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence 37899999888899887 88999999999999887765532 1223344556655434445678899999999
Q ss_pred EeeCCCCCCC--CC--cccCCCcccceeeccccccccCChh----HHhcccccceeEccCCCCCCCCCCCcceecCcccc
Q 039239 72 NLDGCSNIQK--LP--HELGNLEALNSLYAKGIATTEVPSS----VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG 143 (323)
Q Consensus 72 ~Ls~n~~~~~--lp--~~l~~l~~L~~L~L~~n~i~~lP~~----i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l 143 (323)
++++|.+.+. ++ ..++.+++|++|++++|.++.+|.. +..++ +|++|+++ +|. +.... |..+
T Consensus 175 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls-~N~-------l~~~~-p~~~ 244 (310)
T 4glp_A 175 DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLS-HNS-------LRATV-NPSA 244 (310)
T ss_dssp ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECT-TSC-------CCCCC-CSCC
T ss_pred ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECC-CCC-------CCccc-hhhH
Confidence 9999987653 22 3347889999999999999876653 46778 99999999 887 44432 4444
Q ss_pred ccC---CCCCeecCCCC-c-ccC
Q 039239 144 LHM---TDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 144 ~~l---~~L~~L~Ls~N-l-~lP 161 (323)
..+ ++|++|++++| + .+|
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCC
T ss_pred HhccCcCcCCEEECCCCCCCchh
Confidence 444 68999999999 8 777
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=2.7e-14 Score=141.85 Aligned_cols=88 Identities=24% Similarity=0.197 Sum_probs=42.6
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
.|+++++|++|++++|.+.+..|..|+++++|++|++++|.+..+| ..++.++ +|++|+++ +|. +..+.+
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~l 145 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-TLKKLNVA-HNF-------IHSCKL 145 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-TCCEEECC-SSC-------CCCCCC
T ss_pred HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-CCCEEeCC-CCc-------ccceec
Confidence 3445555555555555444444445555555555555555554433 3444444 55555555 444 333333
Q ss_pred ccccccCCCCCeecCCCC
Q 039239 140 SIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N 157 (323)
|..++++++|++|++++|
T Consensus 146 p~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CGGGGTCTTCCEEECCSS
T ss_pred hHhHhhcCCCCEEEccCC
Confidence 444445555555555555
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=2.6e-14 Score=125.77 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=88.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDG 75 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~ 75 (323)
+|++++|++.+..+..+.++++|++|++++|..++.+|. .+..+. ..++++|+.++.+|+ .+.++++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 378899885554455788899999999999875666654 343332 334556677888874 577888899999888
Q ss_pred CCCCCCCCcccCCCcccc---eeecccc-ccccCCh-hHHhcccccc-eeEccCCCC
Q 039239 76 CSNIQKLPHELGNLEALN---SLYAKGI-ATTEVPS-SVVRLNNKLY-ELSSDRSRR 126 (323)
Q Consensus 76 n~~~~~lp~~l~~l~~L~---~L~L~~n-~i~~lP~-~i~~l~~~L~-~L~l~~~n~ 126 (323)
|.+.+ +|. ++.+++|+ +|++++| .++.+|. .+..++ +|+ .|+++ +|.
T Consensus 115 n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~-~n~ 167 (239)
T 2xwt_C 115 TGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLY-NNG 167 (239)
T ss_dssp ECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECC-SCC
T ss_pred CCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcC-CCC
Confidence 87655 665 77777777 8888888 7877765 467777 888 88887 666
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=3.5e-14 Score=130.13 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=87.0
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|. +..+|. +..+++|++|++++|.. ..++. +..+. ++ ++++| .++.+| .+..+++|++|++++|.+
T Consensus 46 L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 46 LSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp EECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCC
T ss_pred EEeeCCC-ccCchh-hhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCC
Confidence 6777776 455664 77788888888888654 34444 33222 33 34443 355555 577788888888888775
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+ ++ .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|. ++.+ +. +..+++|++|++++|
T Consensus 120 ~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~-~L~~L~l~-~n~-------l~~~--~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 120 TD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLT-NLQYLSIG-NAQ-------VSDL--TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCT-TCCEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSS
T ss_pred CC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCC-CccEEEcc-CCc-------CCCC--hh-hcCCCCCCEEECCCC
Confidence 54 43 37778888888888888877765 67777 78888887 776 3333 22 455555555555555
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=141.82 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=88.4
Q ss_pred CCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccc--cccccccCCCCCCEEEeeCCCCCCCCCcc-cCCCcc
Q 039239 18 SNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEA 91 (323)
Q Consensus 18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~l~~ 91 (323)
..+++|++|++++|...+.+|..++.+. ++ ++++|.-.+ .+|..++++++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 3455666666666555555554443333 22 233322111 34455666666666666666655545543 555666
Q ss_pred cceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccc
Q 039239 92 LNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGI 168 (323)
Q Consensus 92 L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L 168 (323)
|++|++++|.+ +.+|..+. + +|+.|+++ +|. ++.+ |..+..+++|++|++++| + .+|+..+..+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~-~L~~L~Ls-~N~-------l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--P-RIKVLDLH-SNK-------IKSI--PKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--T-TCCEEECC-SSC-------CCCC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEECcCCCCCcchhhhhc--c-cCCEEECC-CCc-------cccc--chhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 66666666665 33443332 3 66666666 665 5544 677778999999999999 8 8885545555
Q ss_pred cchhhhhhhhhhh
Q 039239 169 FEDALQDIQLMAA 181 (323)
Q Consensus 169 ~~~sL~~l~l~~n 181 (323)
++|+.+++..|
T Consensus 468 --~~L~~L~l~~N 478 (520)
T 2z7x_B 468 --TSLQKIWLHTN 478 (520)
T ss_dssp --TTCCEEECCSS
T ss_pred --CcccEEECcCC
Confidence 77777777666
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=136.75 Aligned_cols=175 Identities=22% Similarity=0.205 Sum_probs=108.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~ 77 (323)
|++++|.+.+..|..+.++++|++|+|++|...+..+..+..+. ..++.++. +..+ +..+.++++|+.|++++|.
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCc
Confidence 78888887666677788888899999888755443322232222 22333432 3333 3356667777777777776
Q ss_pred CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCC-----CCC--cceecC---------c
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQ-----MGL--LLPITL---------S 140 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~-----~~~--L~~l~L---------~ 140 (323)
..+.+|.......+|++|++++|.++.+|. .+..++ +|+.|+++ +|..... ..+ |+.+++ +
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLS-YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECC-SSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECC-CCcCCccChhhccccccCCEEECCCCccceECH
Confidence 666666655555566666666666666653 455666 66666666 5542110 000 333322 3
Q ss_pred cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
..+..+++|++|++++| + .+|+..+..+ .+|+.+++..|
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N 330 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSV--GNLETLILDSN 330 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCG--GGCCEEECCSS
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCC--cccCEEEccCC
Confidence 45778888889999888 8 8876555555 67777777766
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=3.3e-14 Score=133.09 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=123.5
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-Ccc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n 76 (323)
++++++. +..+|..+. ..++.|+|++|...+..+..+. .+. ++ ++++ +.+..+++ .+.++++|++|+|++|
T Consensus 23 l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 23 LSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCC
Confidence 5677766 677887664 5689999999866655554443 332 33 3444 45677764 6899999999999999
Q ss_pred CCCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCcccc----ccCCCCCe
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG----LHMTDLRH 151 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l----~~l~~L~~ 151 (323)
.+.+..+..|..+++|++|++++|.|..+ |..+..++ +|+.|+++ +|. ++.+ |..+ ..+++|+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLS-QNQ-------ISRF--PVELIKDGNKLPKLML 167 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC-SSC-------CCSC--CGGGTC----CTTCCE
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECC-CCc-------CCee--CHHHhcCcccCCcCCE
Confidence 88777677899999999999999999876 67889999 99999999 888 6665 4333 67999999
Q ss_pred ecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 152 FDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 152 L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
|+|++| + .+|+..+..+....++.+++..|
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 999999 8 88866666553223466666666
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=3.1e-14 Score=141.44 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=122.9
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccc-cccccCCCCCCEEEeeCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSL-PSSICKLKSLKVLNLDGC 76 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n 76 (323)
+|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. + .++++|. +..+ |..|+++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 389999997776677899999999999999887776676665554 3 4455654 5555 888999999999999999
Q ss_pred CCCCCCCcccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCC----
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLR---- 150 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~---- 150 (323)
.+.+..|..++++++|++|++++|.+. .+|..++.++ +|++|+++ +|. ++.+. +..++.+++|+
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls-~n~-------l~~~~-~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLS-YNY-------IQTIT-VNDLQFLRENPQVNL 184 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECC-SSC-------CCEEC-TTTTHHHHHCTTCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEcc-CCc-------ceecC-hhhhhhhhccccccc
Confidence 988877788999999999999999996 5799999999 99999999 887 66552 34565555554
Q ss_pred eecCCCC-c-ccCc
Q 039239 151 HFDLSGN-F-KLDR 162 (323)
Q Consensus 151 ~L~Ls~N-l-~lP~ 162 (323)
+|++++| + .+|+
T Consensus 185 ~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 185 SLDMSLNPIDFIQD 198 (606)
T ss_dssp EEECTTCCCCEECT
T ss_pred eeeccCCCcceeCc
Confidence 7999999 8 7774
No 60
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.5e-14 Score=116.63 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccc
Q 039239 20 LESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG 99 (323)
Q Consensus 20 L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~ 99 (323)
.++|+.|++++|... -+.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++
T Consensus 16 ~~~l~~L~l~~n~l~--------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 16 PSDVKELVLDNSRSN--------------------EGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73 (149)
T ss_dssp GGGCSEEECTTCBCB--------------------TTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCS
T ss_pred CccCeEEEccCCcCC--------------------hhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCC
Confidence 466777777775322 013445556667777777777665544 5666777777777777
Q ss_pred ccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 100 IATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 100 n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
|.++. +|..+..++ +|+.|+++ +|. ++.+..+..++.+++|++|++++| + .+|
T Consensus 74 n~i~~~~~~~~~~l~-~L~~L~ls-~N~-------i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 74 NRVSGGLEVLAEKCP-NLTHLNLS-GNK-------IKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp SCCCSCTHHHHHHCT-TCCEEECT-TSC-------CCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CcccchHHHHhhhCC-CCCEEECC-CCc-------CCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 77765 666666677 77777777 666 555432355667777777777777 6 555
No 61
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=122.26 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=106.1
Q ss_pred CEEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~ 78 (323)
+|+|++|++.+..| ..+..+++|++|+|++|. ++.+++ .+.++++|++|+|++|.+
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----------------------i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----------------------ITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----------------------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCc----------------------CCEECHHHhCCCCCCCEEECCCCcc
Confidence 38899999666545 347889999999999953 344443 678899999999999998
Q ss_pred CCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+..|..++.+++|++|++++|.+..+ |..+..++ +|+.|+++ +|. ++.+. |..+..+++|++|++++|
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLY-DNQ-------ITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECT-TSC-------CCCBC-TTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECC-CCc-------CCEEC-HHHhcCCCCCCEEEecCc
Confidence 888888899999999999999999876 67888999 99999999 888 66552 567889999999999999
Q ss_pred -c
Q 039239 158 -F 158 (323)
Q Consensus 158 -l 158 (323)
+
T Consensus 164 ~l 165 (220)
T 2v70_A 164 PF 165 (220)
T ss_dssp CE
T ss_pred CC
Confidence 6
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=4.6e-14 Score=142.16 Aligned_cols=167 Identities=22% Similarity=0.120 Sum_probs=95.5
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCcccc----------------------
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRL---------------------- 55 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l---------------------- 55 (323)
|++++|++.+..|..+..+++|++|++++|...+.+|. .+..+. ..++++|...
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 67778877777777788888999999988877766663 232222 2223333321
Q ss_pred ----ccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh---------hHHhcccccceeEcc
Q 039239 56 ----KSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS---------SVVRLNNKLYELSSD 122 (323)
Q Consensus 56 ----~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~---------~i~~l~~~L~~L~l~ 122 (323)
+.+|..++++++|++|++++|.+.+..|..++.+++|++|++++|.++.++. .+..++ +|+.|+++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~ 544 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLE 544 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECC
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECC
Confidence 2344455555555555555555544444445555555555555555543311 144455 55555555
Q ss_pred CCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 123 RSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 123 ~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+|. ++.+ | ..+..+++|++|++++| + .+|+..+..+ .+|+.+++..|
T Consensus 545 -~N~-------l~~i--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~L~~N 594 (680)
T 1ziw_A 545 -SNG-------FDEI--PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ--VSLKSLNLQKN 594 (680)
T ss_dssp -SSC-------CCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECTTS
T ss_pred -CCC-------CCCC--CHHHcccccCcceeECCCCCCCcCCHhHhCCC--CCCCEEECCCC
Confidence 554 4433 3 24677777888888777 7 7775444444 55555555554
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=137.74 Aligned_cols=145 Identities=20% Similarity=0.163 Sum_probs=121.4
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCc--cCCCCcCCcc---hhhhcCcccccccccc-ccCCCCCCEEEee
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLK--RLPEFSSAGN---IEEICGCKRLKSLPSS-ICKLKSLKVLNLD 74 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~--~~p~~~~~l~---l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls 74 (323)
+|++++|++.+.+|..++.+++|++|++++|...+ .+|..+..+. ..++++|...+.+|.. +..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 37999999888899999999999999999987765 5555444433 4455665544448875 7889999999999
Q ss_pred CCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccc-cccCCCCCeec
Q 039239 75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-GLHMTDLRHFD 153 (323)
Q Consensus 75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-l~~l~~L~~L~ 153 (323)
+|.+.+.+|..+. ++|++|++++|.++.+|..++.++ +|+.|+++ +|. ++.+ |.. +..+++|++|+
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVA-SNQ-------LKSV--PDGIFDRLTSLQKIW 474 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT-TCCEEECC-SSC-------CCCC--CTTTTTTCTTCCEEE
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC-CCCEEECC-CCc-------CCcc--CHHHhccCCcccEEE
Confidence 9999888887764 789999999999999999999999 99999999 888 7765 654 88999999999
Q ss_pred CCCC-c
Q 039239 154 LSGN-F 158 (323)
Q Consensus 154 Ls~N-l 158 (323)
+++| +
T Consensus 475 l~~N~~ 480 (520)
T 2z7x_B 475 LHTNPW 480 (520)
T ss_dssp CCSSCB
T ss_pred CcCCCC
Confidence 9999 6
No 64
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.1e-13 Score=118.07 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=101.0
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccc--ccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS--ICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~--i~~L~~L~~L~Ls~n~~~ 79 (323)
++++++. ++.+|..+. .+|++|++++|. ++.+++. ++++++|++|+|++|.+.
T Consensus 13 l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~----------------------i~~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (192)
T 1w8a_A 13 VDCTGRG-LKEIPRDIP--LHTTELLLNDNE----------------------LGRISSDGLFGRLPHLVKLELKRNQLT 67 (192)
T ss_dssp EECTTSC-CSSCCSCCC--TTCSEEECCSCC----------------------CCSBCCSCSGGGCTTCCEEECCSSCCC
T ss_pred EEcCCCC-cCcCccCCC--CCCCEEECCCCc----------------------CCccCCccccccCCCCCEEECCCCCCC
Confidence 6777877 577887665 388889888853 4444442 778999999999999999
Q ss_pred CCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
+..|..++.+++|++|++++|.++.++. .+..++ +|+.|+++ +|. ++.+. |..+..+++|++|++++|
T Consensus 68 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH-QLKTLNLY-DNQ-------ISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT-TCCEEECC-SSC-------CCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC-CCCEEECC-CCc-------CCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 8889999999999999999999987754 588898 99999999 888 66652 567889999999999999
Q ss_pred c
Q 039239 158 F 158 (323)
Q Consensus 158 l 158 (323)
+
T Consensus 138 l 138 (192)
T 1w8a_A 138 F 138 (192)
T ss_dssp B
T ss_pred c
Confidence 6
No 65
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.3e-13 Score=120.21 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=104.4
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~ 79 (323)
.|+|++|++.+..+..+..+++|++|+|++|. +..+ |..+.++++|++|+|++|.+.
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----------------------ISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSC----------------------CCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----------------------CCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 37899998666556678999999999999964 3333 566888999999999999877
Q ss_pred CCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
+..+..+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|. ++.+. +..+..+++|++|++++|
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-NLNLLSLY-DNK-------LQTIA-KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-CCCEEECC-CCc-------CCEEC-HHHHhCCCCCCEEEeCCCC
Confidence 55555678999999999999999877 56788999 99999999 888 66662 345788999999999999
Q ss_pred c
Q 039239 158 F 158 (323)
Q Consensus 158 l 158 (323)
+
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 6
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=3.7e-14 Score=140.11 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=105.8
Q ss_pred CCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccc---cccccccCCCCCCEEEeeCCCCCCCCCcc-cCCCc
Q 039239 18 SNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLK---SLPSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLE 90 (323)
Q Consensus 18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~---~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~l~ 90 (323)
+.+++|++|++++|...+.+|..++.+. ++ +++++ .++ .+|..++++++|++|++++|.+.+.+|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5677888888888777776676555443 33 34443 344 34456778888888888888777756653 67778
Q ss_pred ccceeeccccccc-cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCcccccc
Q 039239 91 ALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRG 167 (323)
Q Consensus 91 ~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~ 167 (323)
+|++|++++|.++ .+|..+. + +|+.|+++ +|. ++.+ |..+..+++|++|++++| + .+|+..+..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~-~L~~L~L~-~N~-------l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--P-KVKVLDLH-NNR-------IMSI--PKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--T-TCSEEECC-SSC-------CCCC--CTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cCCEEECCCCCCCcchhhhhc--C-cCCEEECC-CCc-------Cccc--ChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 8888888888873 4454432 4 78888888 777 6655 777779999999999999 8 998554555
Q ss_pred ccchhhhhhhhhhhh
Q 039239 168 IFEDALQDIQLMAAA 182 (323)
Q Consensus 168 L~~~sL~~l~l~~n~ 182 (323)
+ ++|+.+++..|+
T Consensus 496 l--~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 L--TSLQYIWLHDNP 508 (562)
T ss_dssp C--TTCCCEECCSCC
T ss_pred C--CCCCEEEecCCC
Confidence 5 778888777773
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=3.9e-14 Score=141.17 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=86.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
|+|++|.+.+..|..++++++|++|+|++|... .+|. .++.+. ..++++|...+..|..++++++|++|++++|.
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 667777755555555667777777777776444 3333 333332 22334433222223345556666666665554
Q ss_pred CCCCC-----------------------------------------------------------CcccCCCcccceeecc
Q 039239 78 NIQKL-----------------------------------------------------------PHELGNLEALNSLYAK 98 (323)
Q Consensus 78 ~~~~l-----------------------------------------------------------p~~l~~l~~L~~L~L~ 98 (323)
+.+.- +..++.+++|++|+++
T Consensus 183 l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262 (597)
T ss_dssp CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence 43210 1235566777888888
Q ss_pred ccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 99 GIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 99 ~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
+|.+..+ |..+..++ +|+.|+++ +|. +..+ +..+..+++|+.|+|++| + .+|
T Consensus 263 ~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQ-RLERLYIS-NNR-------LVAL--NLYGQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp SSCCCEEESGGGTTCS-SCCEEECT-TSC-------CCEE--ECSSSCCTTCCEEECCSSCCCCCG
T ss_pred CCccCCCCHHHhcCcc-CCCEEECC-CCC-------CCCC--CcccccCCCCcEEECCCCCCCccC
Confidence 8887544 67777777 88888888 776 5554 444555666777777776 6 655
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=9.1e-14 Score=126.36 Aligned_cols=155 Identities=26% Similarity=0.338 Sum_probs=116.0
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
|++++|. +..+|. +..+++|++|++++|...+ ++. +..+. ++. +++ +.++.+|. +..+++|++|++++|.+
T Consensus 51 L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 51 IIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp EECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEECTTSCC
T ss_pred EEccCCC-cccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEECCCCcC
Confidence 7888887 555665 7889999999999976554 444 33322 333 344 34666665 88899999999999876
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
.+ + +.+..+++|++|++++|.++.+ ..+..++ +|+.|+++ +|. ++.+ +. +..+++|++|++++|
T Consensus 125 ~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~-~L~~L~L~-~N~-------l~~~--~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 125 SD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT-KLDTLSLE-DNQ-------ISDI--VP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCT-TCSEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSSC
T ss_pred CC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCC-CCCEEEcc-CCc-------cccc--hh-hcCCCccCEEECCCCc
Confidence 65 3 4688899999999999999887 5788888 99999999 887 6655 33 788999999999999
Q ss_pred c-ccCccccccccchhhhhhhhhhh
Q 039239 158 F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+| .+..+ ++|+.+++..|
T Consensus 190 i~~l~--~l~~l--~~L~~L~l~~n 210 (291)
T 1h6t_A 190 ISDLR--ALAGL--KNLDVLELFSQ 210 (291)
T ss_dssp CCBCG--GGTTC--TTCSEEEEEEE
T ss_pred CCCCh--hhccC--CCCCEEECcCC
Confidence 8 776 35555 66777766655
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=138.70 Aligned_cols=149 Identities=21% Similarity=0.177 Sum_probs=71.6
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~ 77 (323)
|++++|++.+..+..+.++++|++|+|++|...+..|..+..+. + .+++++. +..+| ..++++++|++|++++|.
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccc
Confidence 55555554444444455566666666666543333333333222 2 2223322 33333 345555555555555554
Q ss_pred CCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCC----Ce
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL----RH 151 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L----~~ 151 (323)
+.+.-+..++++++|++|++++|.+.. +|..+.+++ +|+.|+++ +|. ++.+. +..++.+++| +.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLS-SNK-------IQSIY-CTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECT-TSC-------CCEEC-GGGGHHHHTCTTCCCE
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccC-CCCEEeCc-CCc-------cceec-HHHccchhccchhhhh
Confidence 433333345555555555555555542 455555555 55555555 554 33331 2334444444 55
Q ss_pred ecCCCC-c-ccC
Q 039239 152 FDLSGN-F-KLD 161 (323)
Q Consensus 152 L~Ls~N-l-~lP 161 (323)
|++++| + .++
T Consensus 182 L~l~~n~l~~~~ 193 (570)
T 2z63_A 182 LDLSLNPMNFIQ 193 (570)
T ss_dssp EECTTCCCCEEC
T ss_pred cccCCCCceecC
Confidence 555555 4 444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=5.3e-14 Score=137.06 Aligned_cols=163 Identities=16% Similarity=0.103 Sum_probs=96.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccccc----------------
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSS---------------- 61 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~---------------- 61 (323)
+|+|++|.+.+..|..++.+++|++|+|++|...+..| ++.+. ..++++| .++.+|..
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCE
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCC
Confidence 38999999777777789999999999999987665554 22222 2233333 33333321
Q ss_pred -ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHH-hcccccceeEccCCCCCCCCCCCcceec
Q 039239 62 -ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVV-RLNNKLYELSSDRSRRGDKQMGLLLPIT 138 (323)
Q Consensus 62 -i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~-~l~~~L~~L~l~~~n~~~~~~~~L~~l~ 138 (323)
...+++|++|++++|.+.+..|..++.+++|++|++++|.++. .|..+. .++ +|+.|+++ +|. +..+
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls-~N~-------l~~~- 184 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQ-YNF-------IYDV- 184 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECT-TSC-------CCEE-
T ss_pred CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecC-CCc-------cccc-
Confidence 0134566666666666666666666666667777777776654 344554 556 67777776 665 4444
Q ss_pred CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.....+++|+.|+|++| + .+|+. +..+ ++|+.+++..|
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l--~~L~~L~Ls~N 224 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFMGPE-FQSA--AGVTWISLRNN 224 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEECGG-GGGG--TTCSEEECTTS
T ss_pred --cccccCCCCCEEECCCCCCCCCCHh-HcCC--CCccEEEecCC
Confidence 12234666666666666 6 55532 3333 44444444433
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.5e-13 Score=125.85 Aligned_cols=157 Identities=22% Similarity=0.344 Sum_probs=114.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
+|++++|. +..++. +..+++|++|+|++|. +..+|.+.....++ ++++| .+..+|. +..+++|++|++++|.+
T Consensus 67 ~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 67 GLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp EEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCcc
Confidence 37888887 445666 8889999999999976 44555433222233 34443 4666765 88899999999999876
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
.+. +. ++.+++|++|++++|.++.++. +..++ +|+.|+++ +|. ++.+ + .+..+++|++|++++|
T Consensus 142 ~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~-~L~~L~l~-~n~-------l~~~--~-~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 142 TNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLS-KLTTLKAD-DNK-------ISDI--S-PLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCCC--G-GGGGCTTCCEEECTTSC
T ss_pred CcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCC-CCCEEECC-CCc-------cCcC--h-hhcCCCCCCEEEccCCc
Confidence 654 33 7888999999999999988876 78888 89999998 887 6655 2 3788899999999999
Q ss_pred c-ccCccccccccchhhhhhhhhhh
Q 039239 158 F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 158 l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+ .+++ +..+ ++|+.+++..|
T Consensus 207 l~~~~~--l~~l--~~L~~L~l~~N 227 (308)
T 1h6u_A 207 ISDVSP--LANT--SNLFIVTLTNQ 227 (308)
T ss_dssp CCBCGG--GTTC--TTCCEEEEEEE
T ss_pred cCcccc--ccCC--CCCCEEEccCC
Confidence 7 7662 4444 66666666555
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=1.7e-13 Score=129.16 Aligned_cols=148 Identities=18% Similarity=0.101 Sum_probs=92.3
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCC-cCCcc-hh--hhcCccccccc-cccccCCCCCCEEEeeC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEF-SSAGN-IE--EICGCKRLKSL-PSSICKLKSLKVLNLDG 75 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~-~~~l~-l~--~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~ 75 (323)
+|++++|++.+..|..++++++|++|++++|... .+|.. +..+. ++ ++++| .+..+ |..+.++++|++|++++
T Consensus 97 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCS
T ss_pred EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCC
Confidence 3789999877666777888999999999997544 55543 34333 33 44554 34444 45688888889998888
Q ss_pred CCCCCCCCcccCCC-------------------------------------cccceeeccccccccCChhHHhcccccce
Q 039239 76 CSNIQKLPHELGNL-------------------------------------EALNSLYAKGIATTEVPSSVVRLNNKLYE 118 (323)
Q Consensus 76 n~~~~~lp~~l~~l-------------------------------------~~L~~L~L~~n~i~~lP~~i~~l~~~L~~ 118 (323)
|.+.+.-...+.++ ++|+.|++++|.++.+ ..+..++ +|+.
T Consensus 175 n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~-~L~~ 252 (390)
T 3o6n_A 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYP-GLVE 252 (390)
T ss_dssp SCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCT-TCSE
T ss_pred CcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCC-CccE
Confidence 87654321212111 2344555555555443 3456666 7777
Q ss_pred eEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 119 LSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 119 L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
|+++ +|. ++.+. +..+..+++|++|++++| + .+|
T Consensus 253 L~Ls-~n~-------l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 253 VDLS-YNE-------LEKIM-YHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp EECC-SSC-------CCEEE-SGGGTTCSSCCEEECCSSCCCEEE
T ss_pred EECC-CCc-------CCCcC-hhHccccccCCEEECCCCcCcccC
Confidence 7777 665 44431 455667777777777777 6 554
No 73
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.5e-13 Score=116.12 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=98.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~ 81 (323)
++++++. ++.+|..+. ++|++|+|++| .+..+|..+.++++|++|+|++|.+.+.
T Consensus 15 l~~~~~~-l~~ip~~~~--~~l~~L~L~~n----------------------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 15 VRCSNKG-LKVLPKGIP--RDVTELYLDGN----------------------QFTLVPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp EECTTSC-CSSCCSCCC--TTCCEEECCSS----------------------CCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEcCCCC-CCcCCCCCC--CCCCEEECCCC----------------------cCchhHHHhhcccCCCEEECCCCcCCEe
Confidence 5666666 567776553 67888888874 4556777788899999999999988887
Q ss_pred CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC-c
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l 158 (323)
.+..|..+++|++|++++|.++.+|. .+..++ +|+.|+++ +|. ++.+ + ..+..+++|+.|++++| +
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~-~N~-------l~~~--~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK-SLRLLSLH-GND-------ISVV--PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECC-SSC-------CCBC--CTTTTTTCTTCCEEECCSSCE
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCCCC-CCCEEECC-CCC-------CCee--ChhhhhcCccccEEEeCCCCe
Confidence 77889999999999999999987754 688888 99999999 888 6665 4 35788999999999999 5
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=2.1e-14 Score=140.90 Aligned_cols=122 Identities=24% Similarity=0.169 Sum_probs=77.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPS-SICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~ 77 (323)
|+|++|++.+..|..++++++|++|++++|...+..|..++.+. + .++++| .+..+|+ .++++++|++|++++|.
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc
Confidence 67777775555566677777777777777766555555444433 2 234443 3444444 37777777777777776
Q ss_pred CCC-CCCcccCCCcccceeeccccc-cccCC-hhHHhcccccceeEccCCCC
Q 039239 78 NIQ-KLPHELGNLEALNSLYAKGIA-TTEVP-SSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 78 ~~~-~lp~~l~~l~~L~~L~L~~n~-i~~lP-~~i~~l~~~L~~L~l~~~n~ 126 (323)
+.+ ..|..++++++|++|++++|. ++.+| ..+..++ +|++|+++ +|.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~-~n~ 159 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIK-ALS 159 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEE-ETT
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeecc-CCc
Confidence 654 355667777777777777776 45665 4666777 77777777 555
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=144.72 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=72.3
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccC-CCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRL-PEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~-p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
|||++|.+.+..|..+.++++|++|+|++|...+.+ |..++.+. .+++++|.-....|..++++++|++|+|++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 555665554444555555666666666665544444 33333332 22233333222235555555555555555555
Q ss_pred CCCCCCcc--cCCCcccceeeccccccccC--ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccC--CCCCe
Q 039239 78 NIQKLPHE--LGNLEALNSLYAKGIATTEV--PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHM--TDLRH 151 (323)
Q Consensus 78 ~~~~lp~~--l~~l~~L~~L~L~~n~i~~l--P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l--~~L~~ 151 (323)
+.+.+|.. ++++++|++|++++|.+..+ +..+++++ +|+.|+++ +|. +..+. +..+..+ ++|+.
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L~Ls-~N~-------i~~~~-~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-SLKSIDFS-SNQ-------IFLVC-EHELEPLQGKTLSF 178 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-SCCEEEEE-SSC-------CCCCC-SGGGHHHHHCSSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-CCCEEECC-CCc-------CCeeC-HHHcccccCCccce
Confidence 55544443 55555555555555555433 23455555 55555555 444 22221 2333333 55556
Q ss_pred ecCCCC
Q 039239 152 FDLSGN 157 (323)
Q Consensus 152 L~Ls~N 157 (323)
|++++|
T Consensus 179 L~L~~n 184 (844)
T 3j0a_A 179 FSLAAN 184 (844)
T ss_dssp CEECCS
T ss_pred EECCCC
Confidence 666655
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=127.08 Aligned_cols=163 Identities=16% Similarity=0.049 Sum_probs=96.2
Q ss_pred CEEecCCCCCCcCC----cccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccc--ccc--cccCCCCCC
Q 039239 1 MLDLSDCKSLKSLP----AEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKS--LPS--SICKLKSLK 69 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP----~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~--lP~--~i~~L~~L~ 69 (323)
+|+|++|++.+..| ..+..+++|++|+|++|...+..|..++.+. ..++++|...+. ++. .++.+++|+
T Consensus 121 ~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 121 SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ 200 (310)
T ss_dssp SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC
T ss_pred EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC
Confidence 36777777665544 2344577777888877766555555544433 334455443321 322 235677777
Q ss_pred EEEeeCCCCCCCCCc----ccCCCcccceeeccccccccC-ChhHHhc---ccccceeEccCCCCCCCCCCCcceecCcc
Q 039239 70 VLNLDGCSNIQKLPH----ELGNLEALNSLYAKGIATTEV-PSSVVRL---NNKLYELSSDRSRRGDKQMGLLLPITLSI 141 (323)
Q Consensus 70 ~L~Ls~n~~~~~lp~----~l~~l~~L~~L~L~~n~i~~l-P~~i~~l---~~~L~~L~l~~~n~~~~~~~~L~~l~L~~ 141 (323)
+|++++|.+. .++. .++.+++|++|++++|.++.+ |..++.+ + +|+.|+++ +|. ++.+ |.
T Consensus 201 ~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls-~N~-------l~~l--p~ 268 (310)
T 4glp_A 201 NLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLS-FAG-------LEQV--PK 268 (310)
T ss_dssp SCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECC-SSC-------CCSC--CS
T ss_pred EEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC-cCCEEECC-CCC-------CCch--hh
Confidence 7777777653 3333 245667777777777777654 6666555 4 77777777 776 5544 54
Q ss_pred ccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 142 DGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 142 ~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.+. ++|++|++++| + .+|. +..+ ++|+.+++..|
T Consensus 269 ~~~--~~L~~L~Ls~N~l~~~~~--~~~l--~~L~~L~L~~N 304 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNRLNRAPQ--PDEL--PEVDNLTLDGN 304 (310)
T ss_dssp CCC--SCCSCEECCSCCCCSCCC--TTSC--CCCSCEECSST
T ss_pred hhc--CCCCEEECCCCcCCCCch--hhhC--CCccEEECcCC
Confidence 443 67777777777 6 6552 2333 44555554444
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=2.9e-14 Score=138.94 Aligned_cols=163 Identities=17% Similarity=0.112 Sum_probs=117.8
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC--------------------CcCCcchhhhcCccccccccc
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--------------------FSSAGNIEEICGCKRLKSLPS 60 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~--------------------~~~~l~l~~L~~~~~l~~lP~ 60 (323)
+|+|++|.+.+..| ++.+++|++|+|++|... .+|. .+..+...++++|..-+..|.
T Consensus 62 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 138 (487)
T 3oja_A 62 LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL 138 (487)
T ss_dssp EEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB
T ss_pred EEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCch
Confidence 37888888655444 778888888888887433 2221 111222233445443334466
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccC-CCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELG-NLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
.++++++|++|++++|.+.+..|..+. .+++|++|++++|.++.+|... .++ +|+.|+++ +|. ++.+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~-~L~~L~Ls-~N~-------l~~~-- 206 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFA-KLKTLDLS-SNK-------LAFM-- 206 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCT-TCCEEECC-SSC-------CCEE--
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCC-CCCEEECC-CCC-------CCCC--
Confidence 788999999999999999888888776 7899999999999998776543 577 99999999 888 7766
Q ss_pred ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 140 SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
+..+..+++|+.|++++| + .+|+ .+..+ ++|+.+++..|
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l--~~L~~L~l~~N 247 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFS--QNLEHFDLRGN 247 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECT-TCCCC--TTCCEEECTTC
T ss_pred CHhHcCCCCccEEEecCCcCcccch-hhccC--CCCCEEEcCCC
Confidence 667889999999999999 8 8883 34444 55666665555
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=4.7e-13 Score=115.12 Aligned_cols=144 Identities=20% Similarity=0.189 Sum_probs=107.6
Q ss_pred CEEeeeCCCCCccCCCC-cCCcchhhhcCcccccccccc-ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc
Q 039239 24 KKLNLSGCSKLKRLPEF-SSAGNIEEICGCKRLKSLPSS-ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA 101 (323)
Q Consensus 24 ~~L~Ls~c~~l~~~p~~-~~~l~l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~ 101 (323)
+.++.+++ .+..+|.. ...+...+++++ .+..+|.. +.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~-~l~~~p~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSS-CCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCC-CccCCCCCCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666663 44555543 233444455554 45666664 6899999999999998776666668999999999999999
Q ss_pred cccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhh
Q 039239 102 TTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQL 178 (323)
Q Consensus 102 i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l 178 (323)
++.+|.. +..++ +|+.|+++ +|. ++.+. +..+..+++|++|++++| + .+|+..+..+ .+|+.+++
T Consensus 88 l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l 155 (208)
T 2o6s_A 88 LQSLPNGVFDKLT-QLKELALN-TNQ-------LQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWL 155 (208)
T ss_dssp CCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEEC
T ss_pred CCccCHhHhcCcc-CCCEEEcC-CCc-------CcccC-HhHhccCCcCCEEECCCCccceeCHHHhccC--CCccEEEe
Confidence 9888764 67888 99999999 887 66552 234788999999999999 8 8886555555 66777776
Q ss_pred hhh
Q 039239 179 MAA 181 (323)
Q Consensus 179 ~~n 181 (323)
..|
T Consensus 156 ~~N 158 (208)
T 2o6s_A 156 HDN 158 (208)
T ss_dssp CSC
T ss_pred cCC
Confidence 666
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=135.13 Aligned_cols=145 Identities=18% Similarity=0.119 Sum_probs=119.0
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCc--cCCCCcCCcc---hhhhcCcccccccccc-ccCCCCCCEEEee
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLK--RLPEFSSAGN---IEEICGCKRLKSLPSS-ICKLKSLKVLNLD 74 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~--~~p~~~~~l~---l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls 74 (323)
+|++++|++.+.+|..++++++|++|++++|...+ .+|..+..+. ..++++|.-.+.+|.. +..+++|++|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 37899999888899999999999999999976554 3334444333 3445665544448875 7789999999999
Q ss_pred CCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccc-cccCCCCCeec
Q 039239 75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-GLHMTDLRHFD 153 (323)
Q Consensus 75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-l~~l~~L~~L~ 153 (323)
+|.+.+.+|..+. ++|++|++++|.++.+|..++.++ +|+.|+++ +|. ++.+ |.. +..+++|+.|+
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ-ALQELNVA-SNQ-------LKSV--PDGVFDRLTSLQYIW 503 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSC-CCSEEECC-SSC-------CCCC--CTTSTTTCTTCCCEE
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCC-CCCEEECC-CCC-------CCCC--CHHHHhcCCCCCEEE
Confidence 9999888877654 789999999999999999999999 99999999 898 7765 655 88999999999
Q ss_pred CCCC-c
Q 039239 154 LSGN-F 158 (323)
Q Consensus 154 Ls~N-l 158 (323)
+++| +
T Consensus 504 l~~N~~ 509 (562)
T 3a79_B 504 LHDNPW 509 (562)
T ss_dssp CCSCCB
T ss_pred ecCCCc
Confidence 9999 6
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.45 E-value=3.6e-14 Score=130.36 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=84.8
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+|+|++|++.+.. + +..+++|++|++++|... .+|.. ..+...++++ +.+..++.. .+++|++|++++|.+.+
T Consensus 62 ~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls~n~l~-~l~~~-~~L~~L~l~~-n~l~~~~~~--~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 62 LLNLSSNVLYETL-D-LESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAAN-NNISRVSCS--RGQGKKNIYLANNKITM 134 (317)
T ss_dssp EEECTTSCCEEEE-E-ETTCTTCCEEECCSSEEE-EEEEC-TTCCEEECCS-SCCSEEEEC--CCSSCEEEECCSSCCCS
T ss_pred EEECCCCcCCcch-h-hhhcCCCCEEECcCCccc-cccCC-CCcCEEECCC-CccCCcCcc--ccCCCCEEECCCCCCCC
Confidence 3788998865544 3 888999999999997543 33321 1222222233 223333322 24455555555555444
Q ss_pred CCCcccCCCcccceeeccccccccC-ChhH-HhcccccceeEccCCCCCCCCCCC---------------cceecCcccc
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEV-PSSV-VRLNNKLYELSSDRSRRGDKQMGL---------------LLPITLSIDG 143 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i-~~l~~~L~~L~l~~~n~~~~~~~~---------------L~~l~L~~~l 143 (323)
..|..++.+++|++|++++|.++.+ |..+ ..++ +|+.|+++ +|........ ++.+ +..+
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~-~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~ 210 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQ-YNFIYDVKGQVVFAKLKTLDLSSNKLAFM--GPEF 210 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECT-TSCCCEEECCCCCTTCCEEECCSSCCCEE--CGGG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECC-CCcCcccccccccccCCEEECCCCcCCcc--hhhh
Confidence 4444455555555555555555433 2223 2344 55555555 4441100000 3333 3456
Q ss_pred ccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 144 LHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 144 ~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
..+++|++|++++| + .+|. .+..+ ++|+.+++..|
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~-~~~~l--~~L~~L~l~~N 247 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEK-ALRFS--QNLEHFDLRGN 247 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECT-TCCCC--TTCCEEECTTC
T ss_pred cccCcccEEECcCCcccchhh-HhhcC--CCCCEEEccCC
Confidence 66777777777777 6 6662 23333 45555555444
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=142.03 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=120.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~ 77 (323)
.|.++++ +..+|. -.++|++|+|++|...+..|..+..+. .+++++|.....+ |..++++++|++|+|++|.
T Consensus 9 ~dcs~~~-L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCN-LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCC-SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCC-CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 3455555 778887 368999999999887777676665554 4566787777888 6789999999999999999
Q ss_pred CCCCCCcccCCCcccceeecccccccc-CChh--HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTE-VPSS--VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL 154 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~--i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L 154 (323)
+.+..|..|+++++|++|++++|.+.. +|.. +..++ +|++|+++ +|. +..+..+..++++++|++|++
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls-~N~-------l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLS-KNQ-------IRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-SCCEEEEE-SCC-------CCCCCCCGGGGTCSSCCEEEE
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-CCCEEECC-CCc-------ccccccchhHhhCCCCCEEEC
Confidence 998889999999999999999999964 5665 88999 99999999 888 666655567899999999999
Q ss_pred CCC-c-ccC
Q 039239 155 SGN-F-KLD 161 (323)
Q Consensus 155 s~N-l-~lP 161 (323)
++| + .+.
T Consensus 156 s~N~i~~~~ 164 (844)
T 3j0a_A 156 SSNQIFLVC 164 (844)
T ss_dssp ESSCCCCCC
T ss_pred CCCcCCeeC
Confidence 999 7 544
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=3.2e-14 Score=140.01 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=64.0
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT 138 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~ 138 (323)
.+.++++|++|++++|.+.+..|..++.+++|++|++++|.+. .+|..+..++ +|+.|+++ +|. ++.+.
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~-~n~-------l~~~~ 486 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLS-QCQ-------LEQLS 486 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECT-TSC-------CCEEC
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECC-CCc-------cccCC
Confidence 3555566666666666655555556666666666666666653 3565666666 66666666 555 44331
Q ss_pred CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
|..+.++++|++|++++| + .+|+..+..+ ++|+.+++..|
T Consensus 487 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N 528 (570)
T 2z63_A 487 -PTAFNSLSSLQVLNMASNQLKSVPDGIFDRL--TSLQKIWLHTN 528 (570)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred -hhhhhcccCCCEEeCCCCcCCCCCHHHhhcc--cCCcEEEecCC
Confidence 345666677777777777 6 6655445444 55555555444
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=9.9e-14 Score=127.09 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=114.2
Q ss_pred CEEecCCCCCCcCCcccCCC-----CCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccc--ccccc--cCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNL-----ESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKS--LPSSI--CKLKSL 68 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L-----~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~--lP~~i--~~L~~L 68 (323)
+|+|++|++.+. |..++.+ ++|++|+|++|...+..|..++.+. ..++++|...+. +|..+ +++++|
T Consensus 125 ~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 125 ILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp EEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred EEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 378889886655 7767666 8999999999877666666665544 334556554443 45555 788899
Q ss_pred CEEEeeCCCCCC--CCC-cccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCcccc
Q 039239 69 KVLNLDGCSNIQ--KLP-HELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG 143 (323)
Q Consensus 69 ~~L~Ls~n~~~~--~lp-~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l 143 (323)
++|++++|.+.+ .++ ..+..+++|++|++++|.++..+ ..+..++ +|+.|+++ +|. ++.+ |..+
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~i--p~~~ 272 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLS-FTG-------LKQV--PKGL 272 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-TCCEEECT-TSC-------CSSC--CSSC
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-CCCEEECC-CCc-------cChh--hhhc
Confidence 999999987662 223 23457788999999999986643 3455567 89999998 887 6644 6555
Q ss_pred ccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 144 LHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 144 ~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
. ++|++|++++| + .+|. +..+ ++|+.+++..|
T Consensus 273 ~--~~L~~L~Ls~N~l~~~p~--~~~l--~~L~~L~L~~N 306 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRNPS--PDEL--PQVGNLSLKGN 306 (312)
T ss_dssp C--SEEEEEECCSSCCCSCCC--TTTS--CEEEEEECTTC
T ss_pred c--CCceEEECCCCCCCCChh--HhhC--CCCCEEeccCC
Confidence 5 78899999999 8 7762 5544 66666666655
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.5e-13 Score=111.32 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=96.9
Q ss_pred hhhhcCccccc--cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHHhcccccceeEcc
Q 039239 46 IEEICGCKRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 46 l~~L~~~~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~ 122 (323)
..++++|. +. .+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.. +|..+..++ +|+.|+++
T Consensus 28 ~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls 103 (168)
T 2ell_A 28 ELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLS 103 (168)
T ss_dssp EEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECB
T ss_pred EEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEecc
Confidence 34456654 54 8999899999999999999986655 789999999999999999977 788888899 99999999
Q ss_pred CCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc---cccccccchhhhhhhhhhh
Q 039239 123 RSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR---KEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 123 ~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~---~~L~~L~~~sL~~l~l~~n 181 (323)
+|. ++.+.....+..+++|++|++++| + .+|+ ..+..+ ++|+.+++..|
T Consensus 104 -~N~-------l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~~n 157 (168)
T 2ell_A 104 -GNK-------LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTYLDGYDR 157 (168)
T ss_dssp -SSS-------CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCEETTEET
T ss_pred -CCc-------cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcEecCCCC
Confidence 888 666632367889999999999999 8 7774 344444 56666654443
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.1e-13 Score=111.07 Aligned_cols=103 Identities=25% Similarity=0.367 Sum_probs=58.6
Q ss_pred CCCCEEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccc
Q 039239 66 KSLKVLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGL 144 (323)
Q Consensus 66 ~~L~~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~ 144 (323)
++|+.|++++|.+. +.+|..++.+++|++|++++|.++.+ ..+..++ +|+.|+++ +|. +... +|..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~-~L~~L~Ls-~n~-------i~~~-~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLN-KLKKLELS-DNR-------VSGG-LEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCT-TCCEEECC-SSC-------CCSC-THHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCC-CCCEEECC-CCc-------ccch-HHHHhh
Confidence 55666666666655 46666666666666666666666555 5555666 66666666 555 3332 244445
Q ss_pred cCCCCCeecCCCC-c-ccC-ccccccccchhhhhhhhhhh
Q 039239 145 HMTDLRHFDLSGN-F-KLD-RKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 145 ~l~~L~~L~Ls~N-l-~lP-~~~L~~L~~~sL~~l~l~~n 181 (323)
.+++|++|++++| + .+| +..+..+ ++|+.+++..|
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l--~~L~~L~l~~N 123 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKL--ENLKSLDLFNC 123 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGC--TTCCEEECTTC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhC--CCCCEEeCcCC
Confidence 5666666666666 5 443 1233333 44444444444
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=1.8e-13 Score=137.91 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDGCS 77 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~ 77 (323)
|+|++|.+.+..+..++++++|++|+|++|...+..|..++.+. ..++++| .+..+|+ .++++++|++|++++|.
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc
Confidence 56666664444444466666666666666655554454433322 2233333 4555555 36666666666666666
Q ss_pred CCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCcccc--ccCCCCCeecC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG--LHMTDLRHFDL 154 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l--~~l~~L~~L~L 154 (323)
+.+..|..++++++|++|++++|.+..+ |..+..++ +|++|+++ +|. ++.+. +..+ ..+++|++|++
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLS-NNK-------IQALK-SEELDIFANSSLKKLEL 178 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-TCCEEECC-SSC-------CCCBC-HHHHGGGTTCEESEEEC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccc-cCCEEEcc-CCc-------ccccC-HHHhhccccccccEEEC
Confidence 6555555666666666666666666433 44555666 66666666 555 33331 1222 24577888888
Q ss_pred CCC-c-ccCcc
Q 039239 155 SGN-F-KLDRK 163 (323)
Q Consensus 155 s~N-l-~lP~~ 163 (323)
++| + .+++.
T Consensus 179 ~~n~l~~~~~~ 189 (680)
T 1ziw_A 179 SSNQIKEFSPG 189 (680)
T ss_dssp TTCCCCCBCTT
T ss_pred CCCcccccChh
Confidence 888 6 65543
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=5.7e-13 Score=124.65 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=111.6
Q ss_pred CEEeeeCCCCCccCCCCcC-CcchhhhcCcccccccccc-cc-CCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239 24 KKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPSS-IC-KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI 100 (323)
Q Consensus 24 ~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~~-i~-~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n 100 (323)
+.+++++ ..+..+|..+. .+..++|+++ .+..++.. +. ++++|++|+|++|.+.+..|..|..+++|++|++++|
T Consensus 21 ~~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCS-SCCSSCCSSCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCC-CCcCccCccCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 6888888 45677886443 3445566664 57777665 44 8999999999999988877788999999999999999
Q ss_pred ccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCcccccccc-chhhhhh
Q 039239 101 ATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIF-EDALQDI 176 (323)
Q Consensus 101 ~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~-~~sL~~l 176 (323)
.++.+|. .+..++ +|+.|+++ +|. +..+. +..|..+++|++|+|++| + .+|+..+..+. ..+|+.+
T Consensus 99 ~l~~~~~~~~~~l~-~L~~L~L~-~N~-------i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 99 HLHTLDEFLFSDLQ-ALEVLLLY-NNH-------IVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCCEECTTTTTTCT-TCCEEECC-SSC-------CCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred cCCcCCHHHhCCCc-CCCEEECC-CCc-------ccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 9988865 678888 99999999 888 66663 467899999999999999 8 88854432211 1555666
Q ss_pred hhhhh
Q 039239 177 QLMAA 181 (323)
Q Consensus 177 ~l~~n 181 (323)
++..|
T Consensus 169 ~L~~N 173 (361)
T 2xot_A 169 DLSSN 173 (361)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55544
No 88
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.2e-13 Score=140.85 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=56.6
Q ss_pred cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239 12 SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN 88 (323)
Q Consensus 12 ~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~ 88 (323)
..|..+..+++|+.|+|++|... .+|..+..+. ++ +|++ +.+..+|..|++|++|++|+|++|.+. .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34556677777777877775433 4544332222 22 2233 234455555555555666666555544 55555555
Q ss_pred CcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+++|++|+|++|.|+.+|..++.++ +|+.|+++ +|.
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~-~L~~L~L~-~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLC-NLQFLGVE-GNP 327 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCT-TCCCEECT-TSC
T ss_pred CCCCCEEECCCCCCCccChhhhcCC-CccEEeCC-CCc
Confidence 5556666666555555555555555 55566555 554
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=4.8e-13 Score=132.64 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=97.6
Q ss_pred CCCccCCCCc-CCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-h
Q 039239 32 SKLKRLPEFS-SAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-S 108 (323)
Q Consensus 32 ~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~ 108 (323)
..+.++|..+ ..++.++|++ +.++.+|+ +|.++++|++|+|++|.+.+..|..|+++++|++|++++|+++.+|. .
T Consensus 41 ~~l~~vP~~lp~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 41 LNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SCCSSCCSSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CCcCccCCCCCcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 3566888654 3455566666 56888875 69999999999999998877777789999999999999999999875 5
Q ss_pred HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 109 VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 109 i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
+..++ +|++|+++ +|. ++.+. +..|+++++|++|++++| + .++
T Consensus 120 f~~L~-~L~~L~Ls-~N~-------l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~ 164 (635)
T 4g8a_A 120 FSGLS-SLQKLVAV-ETN-------LASLE-NFPIGHLKTLKELNVAHNLIQSFK 164 (635)
T ss_dssp GTTCT-TCCEEECT-TSC-------CCCST-TCCCTTCTTCCEEECCSSCCCCCC
T ss_pred hcCCC-CCCEEECC-CCc-------CCCCC-hhhhhcCcccCeeccccCccccCC
Confidence 78899 99999999 888 66662 246899999999999999 7 554
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=5.5e-13 Score=133.25 Aligned_cols=156 Identities=26% Similarity=0.357 Sum_probs=105.5
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|++++|. +..+|. +..+++|+.|+|++|...+ +|.+.....++ +|++| .+..+| .+..+++|+.|+|++|.+.
T Consensus 48 L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 48 IIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred EECcCCC-CCCChH-HccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCC
Confidence 6777776 455664 7788999999998876544 34322222233 33443 455555 5788888888888888765
Q ss_pred CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
+ + +.+..+++|+.|++++|.+..+ ..+..++ +|+.|+++ +|. +..+ +. +..+++|+.|+|++| +
T Consensus 123 ~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~-~L~~L~Ls-~N~-------l~~~--~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 123 D-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT-KLDTLSLE-DNQ-------ISDI--VP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCT-TCSEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred C-C-ccccCCCccCEEECCCCccCCc-hhhcccC-CCCEEECc-CCc-------CCCc--hh-hccCCCCCEEECcCCCC
Confidence 5 3 4577888888888888888777 5677888 88888888 777 5544 22 677788888888888 7
Q ss_pred -ccCccccccccchhhhhhhhhhh
Q 039239 159 -KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 159 -~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.+| .+..+ .+|+.|++..|
T Consensus 188 ~~l~--~l~~l--~~L~~L~L~~N 207 (605)
T 1m9s_A 188 SDLR--ALAGL--KNLDVLELFSQ 207 (605)
T ss_dssp CBCG--GGTTC--TTCSEEECCSE
T ss_pred CCCh--HHccC--CCCCEEEccCC
Confidence 664 34444 55555555544
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=5.8e-13 Score=122.21 Aligned_cols=161 Identities=14% Similarity=0.067 Sum_probs=115.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccc-cCCCCCCEEEeeCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSI-CKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i-~~L~~L~~L~Ls~n 76 (323)
|++++|++.+ ++. ..+++|++|++++|...+..|..++.+. ..++++| .+..+ |..+ ..+++|++|++++|
T Consensus 104 L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence 5666766443 332 2367788888888776665554444333 3345554 44444 4555 47899999999998
Q ss_pred CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
.+.+. | ....+++|++|++++|.++.+|..+..++ +|+.|+++ +|. ++.+ |..+..+++|+.|++++
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA-GVTWISLR-NNK-------LVLI--EKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGT-TCSEEECT-TSC-------CCEE--CTTCCCCTTCCEEECTT
T ss_pred cCccc-c-cccccccCCEEECCCCcCCcchhhhcccC-cccEEECc-CCc-------ccch--hhHhhcCCCCCEEEccC
Confidence 86654 3 34468999999999999999998899999 99999999 888 7766 77889999999999999
Q ss_pred C-c--ccCccccccccchhhhhhhhhhh
Q 039239 157 N-F--KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 157 N-l--~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
| + ...+..+..+ +.|+.+++..+
T Consensus 247 N~~~~~~~~~~~~~~--~~L~~l~l~~~ 272 (317)
T 3o53_A 247 NGFHCGTLRDFFSKN--QRVQTVAKQTV 272 (317)
T ss_dssp CCCBHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred CCccCcCHHHHHhcc--ccceEEECCCc
Confidence 9 6 2333444444 66777766544
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.7e-12 Score=128.77 Aligned_cols=131 Identities=26% Similarity=0.335 Sum_probs=88.2
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~ 81 (323)
|++++|.+ +.+|..+. ++|++|+|++|... .+|.....+...++++| .++.+|. +.+ +|++|++++|.+.+
T Consensus 64 L~Ls~n~L-~~lp~~l~--~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~- 134 (571)
T 3cvr_A 64 LQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTM- 134 (571)
T ss_dssp EECCSSCC-SCCCSCCC--TTCSEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSC-
T ss_pred EEeCCCCC-CccCHhHc--CCCCEEECcCCCCc-ccccccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCC-
Confidence 77888874 44777663 77888888886544 67744444444455554 5566777 654 78888888876655
Q ss_pred CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-c
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-K 159 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~ 159 (323)
+|. .+++|++|++++|.++.+|. .++ +|+.|+++ +|. ++.+ |. +. ++|+.|+|++| + .
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~-~L~~L~Ls-~N~-------L~~l--p~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTMLPE---LPT-SLEVLSVR-NNQ-------LTFL--PE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC---CCT-TCCEEECC-SSC-------CSCC--CC-CC--TTCCEEECCSSCCSS
T ss_pred CCC---cCccccEEeCCCCccCcCCC---cCC-CcCEEECC-CCC-------CCCc--ch-hh--CCCCEEECcCCCCCc
Confidence 665 56778888888888877776 455 77888887 776 5554 44 44 67777777777 6 6
Q ss_pred cC
Q 039239 160 LD 161 (323)
Q Consensus 160 lP 161 (323)
+|
T Consensus 195 lp 196 (571)
T 3cvr_A 195 LP 196 (571)
T ss_dssp CC
T ss_pred hh
Confidence 66
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.39 E-value=2.5e-13 Score=133.23 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=111.4
Q ss_pred EecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccc-ccccCCCCCCEEEeeCCCC
Q 039239 3 DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLP-SSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 3 ~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~ 78 (323)
|.+++. +..+|..+. ++|++|+|++|...+..|..+..+. ..++++| .+..++ ..++++++|++|++++|.+
T Consensus 11 ~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence 445554 678898664 8999999999887766666555544 3345555 455554 6789999999999999988
Q ss_pred CCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG 156 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~ 156 (323)
.+..|..++++++|++|++++|.++. +|..+..++ +|+.|+++ +|.. +..+. +..++++++|++|++++
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~-~n~~------~~~~~-~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIG-NVET------FSEIR-RIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEE-ESSS------CCEEC-TTTTTTCCEEEEEEEEE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEEECC-CCcc------ccccC-HhhhhcccccCeeeccC
Confidence 87777779999999999999999974 567888998 99999999 7652 23331 24677788888888888
Q ss_pred C-c-ccCcccccc
Q 039239 157 N-F-KLDRKEVRG 167 (323)
Q Consensus 157 N-l-~lP~~~L~~ 167 (323)
| + .+.+..+..
T Consensus 158 n~l~~~~~~~l~~ 170 (549)
T 2z81_A 158 LSLRNYQSQSLKS 170 (549)
T ss_dssp TTCCEECTTTTTT
T ss_pred CcccccChhhhhc
Confidence 8 6 433334433
No 94
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=1.9e-12 Score=119.59 Aligned_cols=116 Identities=21% Similarity=0.262 Sum_probs=57.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|++++|. +..+|. +..+++|++|++++|. +..+|.+.....++ ++++| .+..+| .+.++++|++|++++|.+.
T Consensus 49 L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 49 LVVAGEK-VASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp EECCSSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCC
T ss_pred EEEeCCc-cccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCccc
Confidence 5566655 344554 5666677777776653 33344322111122 23333 344443 3556666666666665543
Q ss_pred CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+ ++. +..+++|++|++++|.....+..+..++ +|+.|+++ +|.
T Consensus 124 ~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~L~~L~l~-~~~ 166 (347)
T 4fmz_A 124 D-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMT-GLNYLTVT-ESK 166 (347)
T ss_dssp C-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCT-TCCEEECC-SSC
T ss_pred C-chh-hccCCceeEEECCCCCCcccccchhhCC-CCcEEEec-CCC
Confidence 3 222 5555666666666654322223355555 55555555 444
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=1.5e-12 Score=120.41 Aligned_cols=158 Identities=20% Similarity=0.303 Sum_probs=80.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|++++|. +..+|. +..+++|++|++++|.....++.+.....++. +++| .+..++. +..+++|++|++++|.+.
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccc
Confidence 6777777 344555 67788888888888776666655322222222 2232 2333333 455555555555555433
Q ss_pred CCCCc---------------------ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239 80 QKLPH---------------------ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT 138 (323)
Q Consensus 80 ~~lp~---------------------~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~ 138 (323)
+ ++. .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|. +..+
T Consensus 191 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~-~L~~L~l~-~n~-------l~~~- 258 (347)
T 4fmz_A 191 D-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLS-QLTWLEIG-TNQ-------ISDI- 258 (347)
T ss_dssp C-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCCC-
T ss_pred c-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCC-CCCEEECC-CCc-------cCCC-
Confidence 2 221 03344444444444444444433 44444 44444444 443 2322
Q ss_pred CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
..+..+++|++|++++| + .+| .+..+ ++|+.+++..|
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~~--~~~~l--~~L~~L~L~~n 297 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDIS--VLNNL--SQLNSLFLNNN 297 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCG--GGGGC--TTCSEEECCSS
T ss_pred --hhHhcCCCcCEEEccCCccCCCh--hhcCC--CCCCEEECcCC
Confidence 34566777777777777 6 554 22222 44555554444
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=1.4e-12 Score=118.48 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=112.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
+|++++|++. .++. +..+++|++|++++|.. ..+|.+.....++ ++++| .+..++ .+..+++|++|++++|.+
T Consensus 72 ~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 72 KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred EEEccCCccC-CCcc-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcC
Confidence 3789999854 4555 88999999999999764 4455533222233 34443 566664 588999999999999987
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
.+. ..++.+++|++|++++|.++.++. +..++ +|+.|+++ +|. ++.+ + .+..+++|+.|++++|
T Consensus 147 ~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~-~L~~L~L~-~N~-------i~~l--~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 TDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-KLQNLYLS-KNH-------ISDL--R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCBC--G-GGTTCTTCSEEEEEEEE
T ss_pred Ccc--hhhccCCCCCEEEccCCccccchh-hcCCC-ccCEEECC-CCc-------CCCC--h-hhccCCCCCEEECcCCc
Confidence 664 678999999999999999988876 88999 99999999 888 6665 3 4889999999999999
Q ss_pred c-ccCc
Q 039239 158 F-KLDR 162 (323)
Q Consensus 158 l-~lP~ 162 (323)
+ ..|.
T Consensus 212 i~~~~~ 217 (291)
T 1h6t_A 212 CLNKPI 217 (291)
T ss_dssp EECCCE
T ss_pred ccCCcc
Confidence 7 6663
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.1e-12 Score=122.02 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=102.3
Q ss_pred CEEecCCCCCCcCCc-ccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hhh--hcCcccccccc-ccccCCCCCCEEEee
Q 039239 1 MLDLSDCKSLKSLPA-EISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IEE--ICGCKRLKSLP-SSICKLKSLKVLNLD 74 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~-~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~~--L~~~~~l~~lP-~~i~~L~~L~~L~Ls 74 (323)
.|+|++|+ ++.+|. .|.++++|++|+|++|...+.+|. .+..+. +++ ..+++++..+| ..+.++++|++|+++
T Consensus 34 ~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 34 ELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp EEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred EEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 38999998 566764 588999999999999988888775 334433 332 23567788885 457889999999999
Q ss_pred CCCCCCCCCcccCCCcc--------------------------cceeeccccccccCChhHHhcccccceeEccCCCCCC
Q 039239 75 GCSNIQKLPHELGNLEA--------------------------LNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGD 128 (323)
Q Consensus 75 ~n~~~~~lp~~l~~l~~--------------------------L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~ 128 (323)
+|.+.+..+..+....+ ++.|++++|.|+++|..++... +|+.+++.++|.
T Consensus 113 ~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~-~L~~l~l~~~n~-- 189 (350)
T 4ay9_X 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNNN-- 189 (350)
T ss_dssp EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE-EEEEEECTTCTT--
T ss_pred ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc-chhHHhhccCCc--
Confidence 98766544433333333 4445555555555555544444 555555541232
Q ss_pred CCCCCcceecCc-cccccCCCCCeecCCCC-c-ccCcc
Q 039239 129 KQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F-KLDRK 163 (323)
Q Consensus 129 ~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l-~lP~~ 163 (323)
++.+ | ..|+.+++|++||+++| + .+|+.
T Consensus 190 -----l~~i--~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 190 -----LEEL--PNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp -----CCCC--CTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred -----ccCC--CHHHhccCcccchhhcCCCCcCccChh
Confidence 4444 3 35788999999999999 9 99853
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.3e-12 Score=129.42 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=112.1
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+|+|++|++ +.+| +.+++|++|+|++|...+ +|.+...+...++++ +.++.+|. .+++|++|++++|.+.+
T Consensus 84 ~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 84 VLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPELPASLKHLDVDN-NQLTMLPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp EEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred EEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cchhhcCCCEEECCC-CcCCCCCC---cCccccEEeCCCCccCc
Confidence 489999984 4788 458999999999986655 888333444445555 45777888 68999999999988765
Q ss_pred CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCC-------Ceec
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL-------RHFD 153 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L-------~~L~ 153 (323)
+|. .+++|++|++++|.++.+|. +. + +|+.|+++ +|. ++.+ |. +.. +| +.|+
T Consensus 155 -lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~-~L~~L~Ls-~N~-------L~~l--p~-~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 155 -LPE---LPTSLEVLSVRNNQLTFLPE-LP--E-SLEALDVS-TNL-------LESL--PA-VPV--RNHHSEETEIFFR 213 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSCCCC-CC--T-TCCEEECC-SSC-------CSSC--CC-CC----------CCEEEE
T ss_pred -CCC---cCCCcCEEECCCCCCCCcch-hh--C-CCCEEECc-CCC-------CCch--hh-HHH--hhhcccccceEEe
Confidence 776 57899999999999998988 54 5 99999999 888 6654 54 443 66 9999
Q ss_pred CCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 154 LSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 154 Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
|++| + .||. .+..+ ++|+.+++..|
T Consensus 214 Ls~N~l~~lp~-~l~~l--~~L~~L~L~~N 240 (571)
T 3cvr_A 214 CRENRITHIPE-NILSL--DPTCTIILEDN 240 (571)
T ss_dssp CCSSCCCCCCG-GGGGS--CTTEEEECCSS
T ss_pred cCCCcceecCH-HHhcC--CCCCEEEeeCC
Confidence 9999 8 8883 44444 67777777776
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1e-12 Score=112.29 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=114.4
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--hhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--EEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
+|++++|. +..+| .+..+++|++|++++| ....++.+.....+ .++++|.--...|..++++++|++|++++|.+
T Consensus 48 ~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 48 YITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp EEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred EEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 37899988 45778 5888999999999998 45555533322223 34556554445788899999999999999998
Q ss_pred CCCCCcccCCCcccceeeccccc-cccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIA-TTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~-i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+..|..++.+++|++|++++|. ++.+| .+..++ +|+.|+++ +|. ++.+ + .+..+++|++|++++|
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~-~L~~L~l~-~n~-------i~~~--~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP-ELKSLNIQ-FDG-------VHDY--R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS-SCCEEECT-TBC-------CCCC--T-TGGGCSSCCEEEECBC
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC-CCCEEECC-CCC-------CcCh--H-HhccCCCCCEEEeeCc
Confidence 88888899999999999999998 88887 688999 99999999 888 6665 3 6788999999999999
Q ss_pred -c
Q 039239 158 -F 158 (323)
Q Consensus 158 -l 158 (323)
+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 5
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.9e-12 Score=115.90 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=86.9
Q ss_pred ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239 4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~ 81 (323)
++++. +..++ .+..+++|++|++++|. +..+|.+.....++ ++++ +.+..+|+ +.++++|++|++++|.+.+
T Consensus 26 l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N~l~~- 99 (263)
T 1xeu_A 26 LGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLKN- 99 (263)
T ss_dssp HTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred hcCCC-ccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCCccCC-
Confidence 44444 23333 25556666666666653 34444322111122 2333 34556665 7777777777777766544
Q ss_pred CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-c
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-K 159 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~ 159 (323)
+|.. .. ++|++|++++|.++.+| .+..++ +|+.|+++ +|. ++.+ + .++.+++|++|++++| + .
T Consensus 100 l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~-~L~~L~Ls-~N~-------i~~~--~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 100 LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLK-NLEILSIR-NNK-------LKSI--V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCT-TCCEEECT-TSC-------CCBC--G-GGGGCTTCCEEECTTSCCCB
T ss_pred cCcc-cc-CcccEEEccCCccCCCh-hhcCcc-cccEEECC-CCc-------CCCC--h-HHccCCCCCEEECCCCcCcc
Confidence 4432 22 67777777777777664 466777 77777777 666 5554 2 4667777777777777 6 5
Q ss_pred cCccccccccchhhhhhhhhhh
Q 039239 160 LDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 160 lP~~~L~~L~~~sL~~l~l~~n 181 (323)
++ .+..+ .+|+.+++..|
T Consensus 165 ~~--~l~~l--~~L~~L~l~~N 182 (263)
T 1xeu_A 165 TG--GLTRL--KKVNWIDLTGQ 182 (263)
T ss_dssp CT--TSTTC--CCCCEEEEEEE
T ss_pred hH--HhccC--CCCCEEeCCCC
Confidence 42 33333 44555554444
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=2.8e-12 Score=123.75 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=83.7
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+|++++|++. .+|. ++++++|++|++++|... .+|.....++..++++| .+..+| .++++++|++|++++|.+.+
T Consensus 135 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred EEECcCCCCC-CCcc-cCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 3778888754 4784 888999999999987544 57776665555566664 566677 58888888888888887654
Q ss_pred CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+|... .+|++|++++|.++.+|. ++.++ +|+.|+++ +|.
T Consensus 210 -l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~-~L~~L~l~-~N~ 248 (454)
T 1jl5_A 210 -LPDLP---LSLESIVAGNNILEELPE-LQNLP-FLTTIYAD-NNL 248 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSSCCC-CTTCT-TCCEEECC-SSC
T ss_pred -CCCCc---CcccEEECcCCcCCcccc-cCCCC-CCCEEECC-CCc
Confidence 55432 478888888888887874 77777 88888888 676
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=6.3e-13 Score=119.09 Aligned_cols=139 Identities=21% Similarity=0.190 Sum_probs=110.2
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|++++|. ++.+| .++.+++|++|+|++|.. ..+|. +..+. ++. +++ +.++.+|.... ++|++|++++|.
T Consensus 45 ~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~~~--~~L~~L~L~~N~ 117 (263)
T 1xeu_A 45 NFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNR-NRLKNLNGIPS--ACLSRLFLDNNE 117 (263)
T ss_dssp EEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCS-SCCSCCTTCCC--SSCCEEECCSSC
T ss_pred EEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCC-CccCCcCcccc--CcccEEEccCCc
Confidence 37899997 56778 588899999999999754 44554 33333 443 444 46777776443 899999999997
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
+.+ ++ .++.+++|++|++++|.++.+| .+..++ +|+.|+++ +|. ++.+ ..+..+++|+.|++++|
T Consensus 118 l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~-~L~~L~L~-~N~-------i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 118 LRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLS-KLEVLDLH-GNE-------ITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCT-TCCEEECT-TSC-------CCBC---TTSTTCCCCCEEEEEEE
T ss_pred cCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCC-CCCEEECC-CCc-------Ccch---HHhccCCCCCEEeCCCC
Confidence 765 44 6899999999999999999886 688999 99999999 888 6665 56788999999999999
Q ss_pred -c-ccC
Q 039239 158 -F-KLD 161 (323)
Q Consensus 158 -l-~lP 161 (323)
+ ..|
T Consensus 183 ~~~~~~ 188 (263)
T 1xeu_A 183 KCVNEP 188 (263)
T ss_dssp EEECCC
T ss_pred cccCCc
Confidence 7 666
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.36 E-value=3.3e-12 Score=123.38 Aligned_cols=147 Identities=25% Similarity=0.204 Sum_probs=81.2
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|++++|++.+ +| ++++++|++|++++|...+ +| ++.+. ++. +++ +.++.++ ++++++|++|++++|.
T Consensus 89 ~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 89 YLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCS
T ss_pred EEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCC
Confidence 37788887444 44 7778888888888875444 44 22222 222 233 3344443 5566666666666665
Q ss_pred CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC--CC--cceecCc------cccccCC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM--GL--LLPITLS------IDGLHMT 147 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--~~--L~~l~L~------~~l~~l~ 147 (323)
..+.+ .++.+++|++|++++|.++.+| +..++ +|+.|+++ +|...... .+ ++.+++. ..++.++
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~-~L~~L~l~-~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~ 233 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK-LLNRLNCD-TNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLT 233 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT-TCCEEECC-SSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred ccccc--ccccCCcCCEEECCCCccceec--cccCC-CCCEEECc-CCcCCeeccccCCCCCEEECcCCcccccCccccC
Confidence 55555 2556666666666666665555 45555 56666665 44411100 00 2222221 0156677
Q ss_pred CCCeecCCCC-c-ccCc
Q 039239 148 DLRHFDLSGN-F-KLDR 162 (323)
Q Consensus 148 ~L~~L~Ls~N-l-~lP~ 162 (323)
+|+.|++++| + .+|.
T Consensus 234 ~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TCSEEECCSSCCSCCCC
T ss_pred CCCEEEeeCCcCCCcCH
Confidence 7777777777 6 6654
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=3.7e-12 Score=122.99 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239 21 ESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI 100 (323)
Q Consensus 21 ~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n 100 (323)
++|++|++++|. +..+|.....++..++++| .++.+| +++++++|++|++++|.+.+ +|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~-l~~l~~~~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNN-LKALSDLPPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSC-CSCCCSCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCc-cCcccCCCCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCC
Confidence 455555555542 2223333223333334443 455677 47788888888888876554 56543 46777777777
Q ss_pred ccccCChhHHhcccccceeEccCCCCCCCCCCC---cceecCc-------cccccCCCCCeecCCCC-c-ccCc--cccc
Q 039239 101 ATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL---LLPITLS-------IDGLHMTDLRHFDLSGN-F-KLDR--KEVR 166 (323)
Q Consensus 101 ~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~---L~~l~L~-------~~l~~l~~L~~L~Ls~N-l-~lP~--~~L~ 166 (323)
.++.+| .++.++ +|+.|+++ +|.....+.. ++.+++. +.++.+++|++|++++| + .+|. ++|+
T Consensus 184 ~l~~l~-~~~~l~-~L~~L~l~-~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 260 (454)
T 1jl5_A 184 QLEELP-ELQNLP-FLTAIYAD-NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 260 (454)
T ss_dssp CCSSCC-CCTTCT-TCCEEECC-SSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCC
T ss_pred cCCcCc-cccCCC-CCCEEECC-CCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccC
Confidence 777776 467777 77777777 6653221111 3333332 14677888888888888 7 6662 3444
Q ss_pred cccc
Q 039239 167 GIFE 170 (323)
Q Consensus 167 ~L~~ 170 (323)
.|++
T Consensus 261 ~L~l 264 (454)
T 1jl5_A 261 ALNV 264 (454)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 4443
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=4e-12 Score=127.30 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=19.9
Q ss_pred cCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 145 HMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 145 ~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
.+++|+.|++++| + .|| ..+..+ ++|+.+++..|
T Consensus 259 ~~~~L~~L~Ls~N~L~~lp-~~l~~l--~~L~~L~L~~N 294 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLTRLP-ESLIHL--SSETTVNLEGN 294 (622)
T ss_dssp CCTTCCEEECCSSCCCSCC-GGGGGS--CTTCEEECCSC
T ss_pred ccccCcEEeCCCCCCCcCC-HHHhhc--cccCEEEecCC
Confidence 3455666666666 5 565 334444 56666666666
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.1e-12 Score=110.06 Aligned_cols=127 Identities=11% Similarity=0.123 Sum_probs=89.0
Q ss_pred cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCC-CCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239 17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLK-SLKVLNLDGCSNIQKLPHELGNLEALNSL 95 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L 95 (323)
+.++.+|+.|++++|.. ..+|. +..+. +|++|++++|.+.+. ..++.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l----------------------~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI----------------------PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCC----------------------CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCC----------------------chhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE
Confidence 55689999999999642 22322 33344 788888888876654 577888888888
Q ss_pred eccccccccCChhH-HhcccccceeEccCCCCCCCCCCCcceecCcc--ccccCCCCCeecCCCC-c-ccCcc---cccc
Q 039239 96 YAKGIATTEVPSSV-VRLNNKLYELSSDRSRRGDKQMGLLLPITLSI--DGLHMTDLRHFDLSGN-F-KLDRK---EVRG 167 (323)
Q Consensus 96 ~L~~n~i~~lP~~i-~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~--~l~~l~~L~~L~Ls~N-l-~lP~~---~L~~ 167 (323)
++++|.++.+|..+ ..++ +|+.|+++ +|. +..+ +. .+..+++|++|++++| + .+|.. .+..
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------i~~~--~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALP-DLTELILT-NNS-------LVEL--GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp ECCSSCCCEECSCHHHHCT-TCCEEECC-SCC-------CCCG--GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred ECCCCcccccCcchhhcCC-CCCEEECC-CCc-------CCcc--hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 88888888777554 7788 88888888 777 5554 43 6778888888888888 7 77632 1333
Q ss_pred ccchhhhhhhhhhh
Q 039239 168 IFEDALQDIQLMAA 181 (323)
Q Consensus 168 L~~~sL~~l~l~~n 181 (323)
+ ++|+.+++..|
T Consensus 139 l--~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 V--PQVRVLDFQKV 150 (176)
T ss_dssp C--TTCSEETTEEC
T ss_pred C--CccceeCCCcC
Confidence 3 55666655554
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=2.9e-12 Score=128.29 Aligned_cols=105 Identities=26% Similarity=0.325 Sum_probs=58.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK 81 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~ 81 (323)
|++++|. ++.+|..+. ++|++|+|++|. +..+|.....++.+++++| .++.+|. .+++|++|++++|.+.+
T Consensus 45 L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~- 115 (622)
T 3g06_A 45 LNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTH- 115 (622)
T ss_dssp EECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCCCCCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCC-
T ss_pred EEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCC-
Confidence 5677766 446776554 677777777764 4456664444444455554 3556665 45666666666665433
Q ss_pred CCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239 82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
+|. .+++|+.|++++|.++.+|..+ + +|+.|+++
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~lp~~l---~-~L~~L~Ls 149 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTSLPVLP---P-GLQELSVS 149 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCCCC---T-TCCEEECC
T ss_pred CCC---CCCCcCEEECCCCCCCcCCCCC---C-CCCEEECc
Confidence 333 3444555555555555554422 3 45555555
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=4.2e-12 Score=122.64 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=102.5
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCS 77 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~ 77 (323)
+|++++|++.+ +| ++.+++|++|++++|...+ +| ++.+. ++ ++++| .++.+| ++++++|++|++++|.
T Consensus 68 ~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 68 KLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC
T ss_pred EEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc
Confidence 48999998544 55 8899999999999987555 44 33332 33 44554 566676 8899999999999998
Q ss_pred CCCCCCcccCCCcccceeeccccc-cccCChhHHhcccccceeEccCCCCCCCCC--CC--cceecCc------cccccC
Q 039239 78 NIQKLPHELGNLEALNSLYAKGIA-TTEVPSSVVRLNNKLYELSSDRSRRGDKQM--GL--LLPITLS------IDGLHM 146 (323)
Q Consensus 78 ~~~~lp~~l~~l~~L~~L~L~~n~-i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--~~--L~~l~L~------~~l~~l 146 (323)
+.+ ++ ++.+++|++|++++|. ++.+ .+..++ +|+.|+++ +|.....+ .. ++.+++. ..++.+
T Consensus 139 l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls-~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l 211 (457)
T 3bz5_A 139 LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCS-FNKITELDVSQNKLLNRLNCDTNNITKLDLNQN 211 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECC-SSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTC
T ss_pred cce-ec--cccCCcCCEEECCCCCccccc--ccccCC-cCCEEECC-CCccceeccccCCCCCEEECcCCcCCeeccccC
Confidence 776 43 8899999999999994 5776 367888 99999999 88722111 00 3333332 124566
Q ss_pred CCCCeecCCCC-c-ccC
Q 039239 147 TDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 147 ~~L~~L~Ls~N-l-~lP 161 (323)
++|++|++++| + .+|
T Consensus 212 ~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTEID 228 (457)
T ss_dssp TTCSEEECCSSCCSCCC
T ss_pred CCCCEEECcCCcccccC
Confidence 66777777777 6 655
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=8.7e-12 Score=104.45 Aligned_cols=121 Identities=26% Similarity=0.285 Sum_probs=95.0
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+++++++ +..+|..+ .++|++|++++|. ++.+|. .+.++++|++|++++|.+.+
T Consensus 12 l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 12 IRCNSKG-LTSVPTGI--PSSATRLELESNK----------------------LQSLPHGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp EECCSSC-CSSCCTTC--CTTCSEEECCSSC----------------------CCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred EEecCCC-CccCCCCC--CCCCcEEEeCCCc----------------------ccEeCHHHhcCcccccEEECCCCcceE
Confidence 5666666 56677644 4788999998853 333443 35788999999999998776
Q ss_pred CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCcc-ccccCCCCCeecCCCC-
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI-DGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~-~l~~l~~L~~L~Ls~N- 157 (323)
..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|. ++.+ +. .+..+++|++|++++|
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~-------l~~~--~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT-QLKELALD-TNQ-------LKSV--PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred eChhHccCCCccCEEECCCCCccccCHHHhhCCc-ccCEEECc-CCc-------ceEe--CHHHhcCCcccCEEEecCCC
Confidence 6666689999999999999999888764 67888 99999999 887 6655 44 4578999999999999
Q ss_pred c
Q 039239 158 F 158 (323)
Q Consensus 158 l 158 (323)
+
T Consensus 136 ~ 136 (177)
T 2o6r_A 136 W 136 (177)
T ss_dssp B
T ss_pred e
Confidence 6
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=7.2e-14 Score=128.56 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=45.2
Q ss_pred ccccccCCCCCCEEEeeCC-CCCCC-CCcccCCCc-ccceeeccccc--c--ccCChhHHhcccccceeEccCCCCCCCC
Q 039239 58 LPSSICKLKSLKVLNLDGC-SNIQK-LPHELGNLE-ALNSLYAKGIA--T--TEVPSSVVRLNNKLYELSSDRSRRGDKQ 130 (323)
Q Consensus 58 lP~~i~~L~~L~~L~Ls~n-~~~~~-lp~~l~~l~-~L~~L~L~~n~--i--~~lP~~i~~l~~~L~~L~l~~~n~~~~~ 130 (323)
+|..+.++++|++|++++| .+.+. ++..+..++ +|++|++++|. + ..+|..+..++ +|+.|+++ +|..
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~-~~~~--- 234 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLS-DSVM--- 234 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECT-TCTT---
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCC-CCCc---
Confidence 4444445555555555555 33322 344445555 55555555553 2 23455555555 55555555 4441
Q ss_pred CCCcceecCccccccCCCCCeecCCCC
Q 039239 131 MGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 131 ~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
++. ..+..+.++++|++|++++|
T Consensus 235 ---l~~-~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 235 ---LKN-DCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ---CCG-GGGGGGGGCTTCCEEECTTC
T ss_pred ---CCH-HHHHHHhCCCCCCEeeCCCC
Confidence 111 11234556666666666666
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=3.3e-12 Score=126.73 Aligned_cols=95 Identities=26% Similarity=0.243 Sum_probs=63.0
Q ss_pred cccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCc
Q 039239 55 LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLL 134 (323)
Q Consensus 55 l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L 134 (323)
++.+|. ++++++|+.|+|++|.+. .+|..++.+++|++|++++|.|+.+| .++.++ +|+.|+++ +|. +
T Consensus 453 l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~-~L~~L~Ls-~N~-------l 520 (567)
T 1dce_A 453 LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLP-RLQELLLC-NNR-------L 520 (567)
T ss_dssp CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-SCCEEECC-SSC-------C
T ss_pred CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC-CCcEEECC-CCC-------C
Confidence 334554 666677777777776554 66777777777777777777776666 666776 77777777 666 5
Q ss_pred ceecCccccccCCCCCeecCCCC-c-ccC
Q 039239 135 LPITLSIDGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 135 ~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
+.+..|..++.+++|+.|+|++| + .+|
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 54433556667777777777777 6 555
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=3.7e-12 Score=122.91 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=66.4
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--hhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--EEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 79 (323)
|++++|.+.+..| ++.+++|+.|++++|... .++.+.....+ .++++| .+..+++ +..+++|++|++++|.+.
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCccC
Confidence 6777777544333 566777888888776533 33332211112 233333 3344443 666677777777776655
Q ss_pred CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
+..+ +..+++|++|++++|.++.++. +..++ +|+.|+++ +|.
T Consensus 279 ~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~-~L~~L~L~-~n~ 320 (466)
T 1o6v_A 279 NISP--LAGLTALTNLELNENQLEDISP-ISNLK-NLTYLTLY-FNN 320 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCT-TCSEEECC-SSC
T ss_pred cccc--ccCCCccCeEEcCCCcccCchh-hcCCC-CCCEEECc-CCc
Confidence 4332 6666677777777776665544 55666 67777776 555
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=6.4e-12 Score=125.51 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=112.6
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
.|+|++|.+.+ +|. +..+++|+.|+|++|.. ..+|.+.....++. |++ +.+..+| .+..+++|+.|+|++|.+
T Consensus 69 ~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 69 KLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEH-NGISDIN-GLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp EEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTT-SCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecC-CCCCCCc-cccCCCccCEEECCCCcc
Confidence 38999998544 555 88899999999999754 44664333222443 444 3466664 588999999999999987
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN- 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N- 157 (323)
.+. ..++.+++|+.|+|++|.+..++. +..++ +|+.|+++ +|. +..+ ..+..+++|+.|+|++|
T Consensus 144 ~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~-~L~~L~Ls-~N~-------i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 144 TDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-KLQNLYLS-KNH-------ISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCBC---GGGTTCTTCSEEECCSEE
T ss_pred CCc--hhhcccCCCCEEECcCCcCCCchh-hccCC-CCCEEECc-CCC-------CCCC---hHHccCCCCCEEEccCCc
Confidence 765 678999999999999999988766 88999 99999999 888 6665 46889999999999999
Q ss_pred c-ccCc
Q 039239 158 F-KLDR 162 (323)
Q Consensus 158 l-~lP~ 162 (323)
+ ..|.
T Consensus 209 l~~~p~ 214 (605)
T 1m9s_A 209 CLNKPI 214 (605)
T ss_dssp EECCCC
T ss_pred CcCCcc
Confidence 7 6663
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=4.9e-12 Score=107.77 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=93.8
Q ss_pred cccccccccccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCC
Q 039239 53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQ 130 (323)
Q Consensus 53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~ 130 (323)
+.++++|..+.. +|++|++++|.+.+..+. .++.+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.
T Consensus 18 ~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~---- 89 (192)
T 1w8a_A 18 RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG-ENK---- 89 (192)
T ss_dssp SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC-SCC----
T ss_pred CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECC-CCc----
Confidence 345667766543 899999999987666554 489999999999999999876 78899999 99999999 888
Q ss_pred CCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239 131 MGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 131 ~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
++.+. +..+..+++|++|+|++| + .+++..+..+ .+|+.+++..|
T Consensus 90 ---l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N 136 (192)
T 1w8a_A 90 ---IKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSLNLASN 136 (192)
T ss_dssp ---CCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTC--TTCCEEECTTC
T ss_pred ---CCccC-HHHhcCCCCCCEEECCCCcCCeeCHHHhhcC--CCCCEEEeCCC
Confidence 77763 355889999999999999 8 7776666666 77788877776
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=4e-12 Score=106.60 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=54.1
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh--hHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS--SVVRLNNKLYELSSDRSRRGDKQMGLLLPIT 138 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~--~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~ 138 (323)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|. +..+
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~-~N~-------i~~~- 128 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK-SLTYLCIL-RNP-------VTNK- 128 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCT-TCCEEECC-SSG-------GGGS-
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCC-CCCEEEec-CCC-------CCCc-
Confidence 45566677777777766554322333666777777777777766665 666666 67777777 665 4433
Q ss_pred Cccc----cccCCCCCeecCCCC
Q 039239 139 LSID----GLHMTDLRHFDLSGN 157 (323)
Q Consensus 139 L~~~----l~~l~~L~~L~Ls~N 157 (323)
+.. +..+++|+.||+++|
T Consensus 129 -~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 129 -KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -TTHHHHHHHHCTTCSEETTEEC
T ss_pred -HhHHHHHHHHCCccceeCCCcC
Confidence 432 566677777777666
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=2.2e-14 Score=122.84 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred ccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239 16 EISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSL 95 (323)
Q Consensus 16 ~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L 95 (323)
.++.+++|++|++++| .+..+| .+.++++|++|++++|.+. .+|..+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n----------------------~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN----------------------NIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp HHHHTTTCSEEECSEE----------------------EESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred HHhcCCCCCEEECCCC----------------------CCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence 5666667777777663 344455 5667778888888887654 667766677778888
Q ss_pred eccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239 96 YAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 96 ~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
++++|.++.+| .+..++ +|+.|+++ +|. ++.+.-...+..+++|++|++++| +
T Consensus 99 ~L~~N~l~~l~-~~~~l~-~L~~L~l~-~N~-------i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISYNQIASLS-GIEKLV-NLRVLYMS-NNK-------ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEECCCHH-HHHHHH-HSSEEEES-EEE-------CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcCCcCCcCC-ccccCC-CCCEEECC-CCc-------CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88888887776 577777 78888887 666 554421135677788888888888 6
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=6.5e-12 Score=124.58 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=90.8
Q ss_pred CCCcCCcccCCCCCCCEEe-eeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccC
Q 039239 9 SLKSLPAEISNLESLKKLN-LSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELG 87 (323)
Q Consensus 9 ~l~~lP~~i~~L~~L~~L~-Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~ 87 (323)
..+.+|..++.+++|+.|+ ++.+ ....++ -..+. .+.+..+|. ..|+.|++++|.+.+ +|. ++
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~-------~l~l~-~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~ 460 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAA-YLDDLR-------SKFLL-ENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LE 460 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH-------HHHHH-HHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GG
T ss_pred cccCCHHHHHHHHhcccCcchhhc-ccchhh-------hhhhh-cccccccCc-----cCceEEEecCCCCCC-CcC-cc
Confidence 3455666677777777777 4432 111110 00111 123344443 247778888876554 665 77
Q ss_pred CCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC-ccc
Q 039239 88 NLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD-RKE 164 (323)
Q Consensus 88 ~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP-~~~ 164 (323)
.+++|+.|++++|.++.+|..++.++ +|+.|+++ +|. ++.+ | .++.+++|+.|+|++| + .++ |..
T Consensus 461 ~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls-~N~-------l~~l--p-~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLRALPPALAALR-CLEVLQAS-DNA-------LENV--D-GVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp GGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECC-SSC-------CCCC--G-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred ccccCcEeecCcccccccchhhhcCC-CCCEEECC-CCC-------CCCC--c-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 78888888888888888888888887 88888888 777 6654 5 6777888888888888 7 664 455
Q ss_pred cccccchhhhhhhhhhh
Q 039239 165 VRGIFEDALQDIQLMAA 181 (323)
Q Consensus 165 L~~L~~~sL~~l~l~~n 181 (323)
+..+ ++|+.+++..|
T Consensus 529 l~~l--~~L~~L~L~~N 543 (567)
T 1dce_A 529 LVSC--PRLVLLNLQGN 543 (567)
T ss_dssp GGGC--TTCCEEECTTS
T ss_pred HhcC--CCCCEEEecCC
Confidence 6555 66666666655
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=3.7e-12 Score=129.91 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=51.6
Q ss_pred cccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCc
Q 039239 55 LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLL 134 (323)
Q Consensus 55 l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L 134 (323)
+..+|..++++++|++|+|++|.+. .+|..|+++++|++|+|++|.|+.+|..++.++ +|+.|+++ +|. +
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~L~-~N~-------l 305 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF-QLKYFYFF-DNM-------V 305 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT-TCSEEECC-SSC-------C
T ss_pred CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC-CCCEEECC-CCC-------C
Confidence 4455555555555666666555444 555555555556666666655555555555555 56666655 554 4
Q ss_pred ceecCccccccCCCCCeecCCCC
Q 039239 135 LPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 135 ~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
..+ |..|+.+++|++|+|++|
T Consensus 306 ~~l--p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 306 TTL--PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCC--CSSTTSCTTCCCEECTTS
T ss_pred Ccc--ChhhhcCCCccEEeCCCC
Confidence 433 445555566666666666
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=1.4e-11 Score=118.89 Aligned_cols=137 Identities=21% Similarity=0.263 Sum_probs=95.7
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc--CCcchhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS--SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN 78 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~--~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~ 78 (323)
+|++++|. +..++. +..+++|++|++++|...+..| .. ..++..++++| .++.++ .+..+++|++|++++|.+
T Consensus 181 ~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCcc
Confidence 37888888 444554 7789999999999987665544 21 12223334443 455554 578889999999999887
Q ss_pred CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239 79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
.+..| +..+++|++|++++|.+..+|. +..++ +|+.|+++ +|. ++.+ + .++.+++|++|++++|
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~-~L~~L~L~-~n~-------l~~~--~-~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQISNISP-LAGLT-ALTNLELN-ENQ-------LEDI--S-PISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCT-TCSEEECC-SSC-------CSCC--G-GGGGCTTCSEEECCSS
T ss_pred ccchh--hhcCCCCCEEECCCCccCcccc-ccCCC-ccCeEEcC-CCc-------ccCc--h-hhcCCCCCCEEECcCC
Confidence 76554 8889999999999999988776 77888 99999999 777 3333 1 1445555555555555
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=105.89 Aligned_cols=115 Identities=25% Similarity=0.305 Sum_probs=95.5
Q ss_pred cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCC
Q 039239 53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
+.++++|..+. ++|++|++++|.+. .+|..+..+++|++|++++|.|+.++ ..+..++ +|+.|+++ +|.
T Consensus 20 ~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls-~N~----- 89 (193)
T 2wfh_A 20 KGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILS-YNR----- 89 (193)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred CCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECC-CCc-----
Confidence 45667776653 68999999998765 78899999999999999999998876 5688999 99999999 888
Q ss_pred CCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhhh
Q 039239 132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAAA 182 (323)
Q Consensus 132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n~ 182 (323)
++.+. +..|..+++|++|+|++| + .+|+..+..+ .+|+.+++..|+
T Consensus 90 --l~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 --LRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDL--SALSHLAIGANP 137 (193)
T ss_dssp --CCBCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECCSSC
T ss_pred --cCEeC-HHHhCCCCCCCEEECCCCCCCeeChhhhhcC--ccccEEEeCCCC
Confidence 67662 356899999999999999 8 8987666666 778888777763
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=4.3e-13 Score=123.36 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred ccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc-ccc--cCChhHHhcccccceeEccCCC
Q 039239 58 LPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI-ATT--EVPSSVVRLNNKLYELSSDRSR 125 (323)
Q Consensus 58 lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n-~i~--~lP~~i~~l~~~L~~L~l~~~n 125 (323)
+|..+.++++|++|++++|.+.+..|..++.+++|++|++++| .++ .+|..+..++ +|+.|+++ +|
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~-~~ 178 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLS-WC 178 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECC-CC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCC-CC
Confidence 4444445555555555555444444444555555555555555 343 2444444554 55555555 44
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=3.6e-11 Score=100.94 Aligned_cols=96 Identities=24% Similarity=0.268 Sum_probs=82.6
Q ss_pred cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCC
Q 039239 53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
+.++++|..+. ++|++|+|++|.+.+..|..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.
T Consensus 22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~-~N~----- 92 (174)
T 2r9u_A 22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLN-DNH----- 92 (174)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECC-CCc-----
Confidence 35667777664 8899999999998888899999999999999999999999876 47888 99999999 888
Q ss_pred CCcceecCcc-ccccCCCCCeecCCCC-c-ccC
Q 039239 132 GLLLPITLSI-DGLHMTDLRHFDLSGN-F-KLD 161 (323)
Q Consensus 132 ~~L~~l~L~~-~l~~l~~L~~L~Ls~N-l-~lP 161 (323)
++.+ +. .+..+++|++|+|++| + ..+
T Consensus 93 --l~~l--~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 --LKSI--PRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp --CCCC--CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred --ccee--CHHHhccccCCCEEEeCCCCccccc
Confidence 7766 54 4889999999999999 7 554
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=5.3e-11 Score=99.42 Aligned_cols=94 Identities=26% Similarity=0.267 Sum_probs=80.2
Q ss_pred cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCC
Q 039239 53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
+.++++|..+. ++|++|+|++|.+.+..|..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.
T Consensus 19 n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~N~----- 89 (170)
T 3g39_A 19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLN-DNQ----- 89 (170)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECC-CCc-----
Confidence 35666776663 7899999999999888899999999999999999999988765 57888 99999999 888
Q ss_pred CCcceecCccccccCCCCCeecCCCC-c
Q 039239 132 GLLLPITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
++.+. +..+..+++|++|+|++| +
T Consensus 90 --l~~~~-~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 --LKSIP-RGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp --CCCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred --cCEeC-HHHhcCCCCCCEEEeCCCCC
Confidence 77662 235889999999999999 7
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=7.6e-11 Score=98.93 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=77.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+++++|+ ++.+|..+. ++|++|+|++|. +..+ |..+.++++|++|+|++|.+.+
T Consensus 17 l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 17 VNCQNIR-LASVPAGIP--TDKQRLWLNNNQ----------------------ITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp EECCSSC-CSSCCSCCC--TTCSEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEeCCCC-CCccCCCcC--CCCcEEEeCCCC----------------------ccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 6777776 577887664 888899988854 3333 4467788999999999987766
Q ss_pred CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCC
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~ 126 (323)
..+..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~-~N~ 116 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK-SLTHIYLY-NNP 116 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECC-SSC
T ss_pred cChhHhCCcchhhEEECCCCccceeCHHHhcccc-CCCEEEeC-CCC
Confidence 5555578999999999999999888765 78888 99999999 887
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.1e-10 Score=97.45 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=79.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
+++++|+ ++.+|..+. ++|++|+|++|. +..+ |..+.++++|++|+|++|.+.+
T Consensus 14 l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~----------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 14 VDCSGKS-LASVPTGIP--TTTQVLYLYDNQ----------------------ITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp EECTTSC-CSSCCSCCC--TTCSEEECCSSC----------------------CCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred EEeCCCC-cCccCccCC--CCCcEEEcCCCc----------------------CCccChhhhcCcccCCEEECCCCCcCc
Confidence 6788877 666887663 888999998853 3444 4457889999999999998876
Q ss_pred CCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCC
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~ 126 (323)
..+..+..+++|++|++++|.|+.+|. .+..++ +|+.|+++ +|.
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~ 113 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK-SLTHIWLL-NNP 113 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC
T ss_pred cChhhccCCCCCCEEECCCCccCEeCHHHhcCCC-CCCEEEeC-CCC
Confidence 666678899999999999999988876 478888 99999999 887
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=1.5e-10 Score=96.77 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=82.8
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNI 79 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~ 79 (323)
.|++++|++.+..+..++.+++|++|++++|. +..+|+ .+.++++|++|++++|.+.
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ----------------------IQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCcccEeCHHHhcCcccccEEECCCCc----------------------ceEeChhHccCCCccCEEECCCCCcc
Confidence 37899998665445557889999999999963 333443 3578899999999999888
Q ss_pred CCCCcccCCCcccceeeccccccccCChhH-HhcccccceeEccCCCC
Q 039239 80 QKLPHELGNLEALNSLYAKGIATTEVPSSV-VRLNNKLYELSSDRSRR 126 (323)
Q Consensus 80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i-~~l~~~L~~L~l~~~n~ 126 (323)
+..+..++.+++|++|++++|.++.+|..+ ..++ +|+.|+++ +|.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~ 135 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLH-TNP 135 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECC-SSC
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEec-CCC
Confidence 766667889999999999999999887764 6788 99999999 887
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=3.8e-13 Score=115.08 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=107.6
Q ss_pred CCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeec
Q 039239 18 SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYA 97 (323)
Q Consensus 18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L 97 (323)
.....++.++++++...+.+| .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~---------------~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l 77 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIP---------------PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSL 77 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCT---------------TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEE
T ss_pred HhcccccCcchheeEeccccC---------------cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEEC
Confidence 345666777777766555544 467788889999999999999987665 77 8899999999999
Q ss_pred cccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc-cccccccchhhh
Q 039239 98 KGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQ 174 (323)
Q Consensus 98 ~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~ 174 (323)
++|.++.+|..+..++ +|+.|+++ +|. ++.+ + .+..+++|++|++++| + .+|+ ..+..+ ++|+
T Consensus 78 ~~n~l~~l~~~~~~~~-~L~~L~L~-~N~-------l~~l--~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l--~~L~ 143 (198)
T 1ds9_A 78 GRNLIKKIENLDAVAD-TLEELWIS-YNQ-------IASL--S-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL--DKLE 143 (198)
T ss_dssp EEEEECSCSSHHHHHH-HCSEEEEE-EEE-------CCCH--H-HHHHHHHSSEEEESEEECCCHHHHHHHTTT--TTCS
T ss_pred CCCCcccccchhhcCC-cCCEEECc-CCc-------CCcC--C-ccccCCCCCEEECCCCcCCchhHHHHHhcC--CCCC
Confidence 9999999999998888 99999999 887 6665 4 6888999999999999 8 7763 344444 6677
Q ss_pred hhhhhhhhh
Q 039239 175 DIQLMAAAR 183 (323)
Q Consensus 175 ~l~l~~n~~ 183 (323)
.+++..|+.
T Consensus 144 ~L~l~~N~l 152 (198)
T 1ds9_A 144 DLLLAGNPL 152 (198)
T ss_dssp EEEECSCHH
T ss_pred EEEecCCcc
Confidence 777766633
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=1.2e-12 Score=123.10 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=88.5
Q ss_pred EEecCCC---CCCcCCccc-------CCCCCCCEEeeeCCCCCc----cCCCCcCC---cchhhhcCcccc----ccccc
Q 039239 2 LDLSDCK---SLKSLPAEI-------SNLESLKKLNLSGCSKLK----RLPEFSSA---GNIEEICGCKRL----KSLPS 60 (323)
Q Consensus 2 L~Ls~n~---~l~~lP~~i-------~~L~~L~~L~Ls~c~~l~----~~p~~~~~---l~l~~L~~~~~l----~~lP~ 60 (323)
|+|++|. +.+.+|..+ ..+++|++|+|++|.... .+|..+.. ++..++++|..- ..++.
T Consensus 65 L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 144 (386)
T 2ca6_A 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144 (386)
T ss_dssp EECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred EeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH
Confidence 6777763 233556554 678888888888877655 24433322 222334444321 12333
Q ss_pred cccCC---------CCCCEEEeeCCCCC-CCCC---cccCCCcccceeeccccccc------cCChhHHhcccccceeEc
Q 039239 61 SICKL---------KSLKVLNLDGCSNI-QKLP---HELGNLEALNSLYAKGIATT------EVPSSVVRLNNKLYELSS 121 (323)
Q Consensus 61 ~i~~L---------~~L~~L~Ls~n~~~-~~lp---~~l~~l~~L~~L~L~~n~i~------~lP~~i~~l~~~L~~L~l 121 (323)
.+..+ ++|++|++++|.+. +.+| ..+..+++|++|++++|.++ -+|..+..++ +|+.|++
T Consensus 145 ~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~L 223 (386)
T 2ca6_A 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDL 223 (386)
T ss_dssp HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEEC
T ss_pred HHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEEC
Confidence 34444 77888888887765 3444 35566777888888887775 2333666777 7888888
Q ss_pred cCCCCCCCCCCCcce---ecCccccccCCCCCeecCCCC-c
Q 039239 122 DRSRRGDKQMGLLLP---ITLSIDGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 122 ~~~n~~~~~~~~L~~---l~L~~~l~~l~~L~~L~Ls~N-l 158 (323)
+ +|. +.. ..++..+..+++|++|+|++| +
T Consensus 224 s-~n~-------l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 224 Q-DNT-------FTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp C-SSC-------CHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred c-CCC-------CCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 7 666 421 112455666777777777777 5
No 129
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=3.9e-10 Score=104.27 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=76.8
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccc-ccccCCCCCCEEEeeCCCCCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLP-SSICKLKSLKVLNLDGCSNIQ 80 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~ 80 (323)
++.++++.+..+|. +..+++|++|+|+++ +.++.+| ..|++|++|++|+|++|.+.+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~---------------------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQ---------------------QHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSC---------------------SSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCC---------------------CCCCCcChhHhccccCCCEEECCCCccce
Confidence 45666524667888 888888888888862 2344444 357788888889998888888
Q ss_pred CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
..|..|+++++|++|+|++|.|+.+|..+.... .|+.|++. +|.
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~L~~l~l~-~N~ 114 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS-GNP 114 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC-SSC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-CceEEEee-CCC
Confidence 777788888888889998888888887666655 58888888 776
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.06 E-value=8.1e-12 Score=117.46 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=52.8
Q ss_pred ccCCCCCCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhc---------ccccceeEccC
Q 039239 62 ICKLKSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRL---------NNKLYELSSDR 123 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l---------~~~L~~L~l~~ 123 (323)
+..+++|++|+|++|.+.. .+|..+..+++|++|++++|.++. ++..+..+ + +|+.|+++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~- 167 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICG- 167 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECC-
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECC-
Confidence 3567777777777776665 356666677777777777777642 23333333 5 77777777
Q ss_pred CCCCCCCCCCcceecCc---cccccCCCCCeecCCCC
Q 039239 124 SRRGDKQMGLLLPITLS---IDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 124 ~n~~~~~~~~L~~l~L~---~~l~~l~~L~~L~Ls~N 157 (323)
+|. +....++ ..+..+++|++|++++|
T Consensus 168 ~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 168 RNR-------LENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp SSC-------CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCC-------CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 665 3322222 34455666666666666
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=3.1e-12 Score=119.53 Aligned_cols=171 Identities=18% Similarity=0.112 Sum_probs=102.8
Q ss_pred CEEecCCCCCCcCCcccCCC-----CCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccccccc-----cc
Q 039239 1 MLDLSDCKSLKSLPAEISNL-----ESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLKSLPS-----SI 62 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L-----~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~~lP~-----~i 62 (323)
+|+|++|++.+..+..+..+ ++|++|+|++|...+..+..+ ..++..++++|. ++..+. .+
T Consensus 55 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l 133 (362)
T 3goz_A 55 SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAF 133 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHH
Confidence 37889998666656666554 899999999987655444311 122333445544 444332 23
Q ss_pred cC-CCCCCEEEeeCCCCCC----CCCcccCCCc-ccceeeccccccccC-ChhHHh----c-ccccceeEccCCCCCCCC
Q 039239 63 CK-LKSLKVLNLDGCSNIQ----KLPHELGNLE-ALNSLYAKGIATTEV-PSSVVR----L-NNKLYELSSDRSRRGDKQ 130 (323)
Q Consensus 63 ~~-L~~L~~L~Ls~n~~~~----~lp~~l~~l~-~L~~L~L~~n~i~~l-P~~i~~----l-~~~L~~L~l~~~n~~~~~ 130 (323)
.. .++|++|++++|.+.. .++..+..+. +|++|++++|.++.. +..+.. . + +|+.|+++ +|.
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls-~N~---- 207 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA-SVTSLDLS-ANL---- 207 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-TCCEEECT-TSC----
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCC-CCCEEECC-CCC----
Confidence 34 3689999999987764 3334445555 889999999988654 334433 3 5 88999998 777
Q ss_pred CCCcceec---Ccccccc-CCCCCeecCCCC-c-ccCccccccccc--hhhhhhhhhhh
Q 039239 131 MGLLLPIT---LSIDGLH-MTDLRHFDLSGN-F-KLDRKEVRGIFE--DALQDIQLMAA 181 (323)
Q Consensus 131 ~~~L~~l~---L~~~l~~-l~~L~~L~Ls~N-l-~lP~~~L~~L~~--~sL~~l~l~~n 181 (323)
+.... ++..+.. .++|++|+|++| + ..+...+..+-. ++|+.+++..|
T Consensus 208 ---i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 208 ---LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp ---GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred ---CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 44421 1344444 358888888888 7 655322221111 44555555444
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=1.4e-09 Score=101.06 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=95.1
Q ss_pred CcccCCCCCCCEEeeeCCCCCccCCCC--cCCcc--hhhhcCcccccccccc-ccCC-CCCCEEEeeCCCCCCCCCcccC
Q 039239 14 PAEISNLESLKKLNLSGCSKLKRLPEF--SSAGN--IEEICGCKRLKSLPSS-ICKL-KSLKVLNLDGCSNIQKLPHELG 87 (323)
Q Consensus 14 P~~i~~L~~L~~L~Ls~c~~l~~~p~~--~~~l~--l~~L~~~~~l~~lP~~-i~~L-~~L~~L~Ls~n~~~~~lp~~l~ 87 (323)
|..+..+++|++|++++|.. ..+|+. ..... ..++.++..+..+|.. +..+ ..++.|++++|.+. .+|....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS
T ss_pred chhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc
Confidence 34445555666666655433 223321 11111 2234466777777763 4555 46899999998754 5666666
Q ss_pred CCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC--c-ccCc
Q 039239 88 NLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN--F-KLDR 162 (323)
Q Consensus 88 ~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N--l-~lP~ 162 (323)
...+|++|++.+ |.++.+|. .+..++ +|+.|+++ +|. ++.+ |. +.+.+|+.|.+.++ + .+|
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs-~N~-------l~~l--p~--~~~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDIS-RTR-------IHSL--PS--YGLENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECT-TSC-------CCCC--CS--SSCTTCCEEECTTCTTCCCCC-
T ss_pred cccchhHHhhccCCcccCCCHHHhccCc-ccchhhcC-CCC-------cCcc--Ch--hhhccchHhhhccCCCcCcCC-
Confidence 778899999975 77899986 567888 99999999 888 7776 43 23556666666666 6 787
Q ss_pred cccccccchhhhhhhhhhh
Q 039239 163 KEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 163 ~~L~~L~~~sL~~l~l~~n 181 (323)
.+..| .+|+.+.+..+
T Consensus 241 -~l~~l--~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKL--VALMEASLTYP 256 (350)
T ss_dssp -CTTTC--CSCCEEECSCH
T ss_pred -CchhC--cChhhCcCCCC
Confidence 34444 55555554433
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=5.9e-11 Score=110.77 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCC----CCcC----CcchhhhcCccccccccccccCC-----CC
Q 039239 1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP----EFSS----AGNIEEICGCKRLKSLPSSICKL-----KS 67 (323)
Q Consensus 1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p----~~~~----~l~l~~L~~~~~l~~lP~~i~~L-----~~ 67 (323)
++++++|.+.+.+|..+...++|++|+|++|......+ +.+. .++..++++|.--...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788888888888877767779999999976444333 2222 22233445543222224444443 78
Q ss_pred CCEEEeeCCCCCCCCCccc----CCC-cccceeeccccccccCCh-hHHhc----ccccceeEccCCCCCCCCCCCccee
Q 039239 68 LKVLNLDGCSNIQKLPHEL----GNL-EALNSLYAKGIATTEVPS-SVVRL----NNKLYELSSDRSRRGDKQMGLLLPI 137 (323)
Q Consensus 68 L~~L~Ls~n~~~~~lp~~l----~~l-~~L~~L~L~~n~i~~lP~-~i~~l----~~~L~~L~l~~~n~~~~~~~~L~~l 137 (323)
|++|++++|.+.+..+..+ ..+ ++|++|++++|.++..+. .+... +.+|++|+++ +|. +...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~-------l~~~ 153 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GND-------LGIK 153 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSC-------GGGS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCc-------CCHH
Confidence 8888888887666555533 333 788888888888865543 33321 2278888888 776 3321
Q ss_pred c---CccccccCC-CCCeecCCCC-c-ccC
Q 039239 138 T---LSIDGLHMT-DLRHFDLSGN-F-KLD 161 (323)
Q Consensus 138 ~---L~~~l~~l~-~L~~L~Ls~N-l-~lP 161 (323)
. ++..+..++ +|++|++++| + ...
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 1 122334444 7777777777 6 444
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.93 E-value=1.2e-11 Score=118.40 Aligned_cols=148 Identities=18% Similarity=0.092 Sum_probs=74.3
Q ss_pred EEecCCCCCC----cCCcccCCCCCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccc----cccccccCC
Q 039239 2 LDLSDCKSLK----SLPAEISNLESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLK----SLPSSICKL 65 (323)
Q Consensus 2 L~Ls~n~~l~----~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~----~lP~~i~~L 65 (323)
|+|++|++.. .+|..+..+++|++|++++|......+..+ ..++..++++|.--. .++..+..+
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence 5666665442 345556666666666666655332211100 112222333332111 234455556
Q ss_pred CCCCEEEeeCCCCCCCCCcccC-----CCcccceeecccccccc-----CChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239 66 KSLKVLNLDGCSNIQKLPHELG-----NLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLL 135 (323)
Q Consensus 66 ~~L~~L~Ls~n~~~~~lp~~l~-----~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~ 135 (323)
++|++|++++|.+....+..+. ..++|++|++++|.++. ++..+..++ +|+.|+++ +|. +.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls-~n~-------l~ 240 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALG-SNK-------LG 240 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECC-SSB-------CH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEecc-CCc-------CC
Confidence 6666777766654433222222 24466677777766653 455666666 67777776 554 22
Q ss_pred eecC---cc-ccccCCCCCeecCCCC-c
Q 039239 136 PITL---SI-DGLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 136 ~l~L---~~-~l~~l~~L~~L~Ls~N-l 158 (323)
...+ .. .+..+++|++|++++| +
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 2211 01 1124667777777777 5
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=2.9e-09 Score=98.40 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=77.7
Q ss_pred ccccccccccCCCCCCEEEeeC-CCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCC
Q 039239 54 RLKSLPSSICKLKSLKVLNLDG-CSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 54 ~l~~lP~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~ 131 (323)
.+..+|. +..+++|++|+|++ |.+.+..|..|+.+++|++|+|++|.|..+| ..+..++ +|+.|+|+ +|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~----- 91 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS-FNA----- 91 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC-SSC-----
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCC-CCc-----
Confidence 6788898 99999999999997 7766666678999999999999999998765 5778999 99999999 888
Q ss_pred CCcceecCccc-cccCCCCCeecCCCC-c
Q 039239 132 GLLLPITLSID-GLHMTDLRHFDLSGN-F 158 (323)
Q Consensus 132 ~~L~~l~L~~~-l~~l~~L~~L~Ls~N-l 158 (323)
|+.+ |.. +..++ |+.|+|++| |
T Consensus 92 --l~~~--~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 --LESL--SWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp --CSCC--CSTTTCSCC-CCEEECCSSCC
T ss_pred --ccee--CHHHcccCC-ceEEEeeCCCc
Confidence 7766 543 44444 999999999 6
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.77 E-value=1.2e-10 Score=111.50 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=15.5
Q ss_pred Ccccceeecccccccc-----CChhHHhcccccceeEcc
Q 039239 89 LEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 89 l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~ 122 (323)
+++|++|++++|.++. ++..+..++ +|+.|+++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls 292 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLA 292 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECT
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECC
Confidence 4444555555544432 344444444 45555554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=1.6e-07 Score=86.10 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=69.0
Q ss_pred CCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccc-eeEccCCCCCCCCCCCcceecCccc
Q 039239 65 LKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLY-ELSSDRSRRGDKQMGLLLPITLSID 142 (323)
Q Consensus 65 L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~-~L~l~~~n~~~~~~~~L~~l~L~~~ 142 (323)
+++|+.++|++|++...-+..|.++.+|+.+++.+| +..++. ++..+. +|+ .+.+. + . ++.+. +.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~-~-~-------l~~I~-~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELP-A-S-------VTAIE-FGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEEC-T-T-------CCEEC-TTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEc-c-c-------ceEEc-hhh
Confidence 678999999987765554556888999999999887 777754 667777 898 89887 5 3 56663 367
Q ss_pred cccCCCCCeecCCCC-c-ccCccccc
Q 039239 143 GLHMTDLRHFDLSGN-F-KLDRKEVR 166 (323)
Q Consensus 143 l~~l~~L~~L~Ls~N-l-~lP~~~L~ 166 (323)
|.++++|+.+++++| + .|++..+.
T Consensus 293 F~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred hhCCccCCEEEeCCCccCccchhhhc
Confidence 889999999999888 7 88754433
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=2.6e-08 Score=98.23 Aligned_cols=68 Identities=12% Similarity=-0.074 Sum_probs=42.1
Q ss_pred cccccccCCCCCCEEEeeCCCCC---CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239 57 SLPSSICKLKSLKVLNLDGCSNI---QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 57 ~lP~~i~~L~~L~~L~Ls~n~~~---~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+|..+.++++|+.|+++.+... ...+..+..+++|+.|+++++....+|..+..++ +|+.|+++ +|.
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~Ls-~~~ 304 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA-QIRKLDLL-YAL 304 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG-GCCEEEET-TCC
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC-CCcEEecC-CCc
Confidence 34555555566666666543222 2333455666677777777765666777777777 88888887 665
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.41 E-value=7.9e-09 Score=101.91 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=29.1
Q ss_pred CCCCCEEEeeCCCCC----CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239 65 LKSLKVLNLDGCSNI----QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 65 L~~L~~L~Ls~n~~~----~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
+++|++|++++|.+. +.++..+.++++|++|++++|.+..+|..+..++ +|+.|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~-~L~~L~l~ 251 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA-NLEEFCGG 251 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT-TCCEEEEC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh-HHHhhccc
Confidence 344444444444433 1222333445556666666665555555555665 66666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=5.4e-09 Score=98.23 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=69.8
Q ss_pred EEecCCCCCCcC----CcccC-CCCCCCEEeeeCCCCCccCCC-C---cCCcchhhhcCcccccc-----ccccc-cCCC
Q 039239 2 LDLSDCKSLKSL----PAEIS-NLESLKKLNLSGCSKLKRLPE-F---SSAGNIEEICGCKRLKS-----LPSSI-CKLK 66 (323)
Q Consensus 2 L~Ls~n~~l~~l----P~~i~-~L~~L~~L~Ls~c~~l~~~p~-~---~~~l~l~~L~~~~~l~~-----lP~~i-~~L~ 66 (323)
|+|++|.+...- ...+. ..++|++|+|++|.....-.. . +..+...+|++| .++. +...+ ...+
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~ 155 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQC 155 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTC
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCC
Confidence 677777744322 22222 236788888888754321110 0 111112223333 2221 11112 2345
Q ss_pred CCCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhcccccceeEccCCCCCCCCCCCccee
Q 039239 67 SLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPI 137 (323)
Q Consensus 67 ~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l 137 (323)
+|++|+|++|.+.. .++..+..+++|++|++++|.|+. ++..+...+ +|+.|+++ +|. +...
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls-~N~-------i~~~ 226 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVA-YNG-------AGDT 226 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECC-SSC-------CCHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECC-CCC-------CCHH
Confidence 66666666665432 233344555666666666666642 234445555 66666666 555 3322
Q ss_pred c---CccccccCCCCCeecCCCC
Q 039239 138 T---LSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 138 ~---L~~~l~~l~~L~~L~Ls~N 157 (323)
. +...+...++|++|||++|
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHhCCCCCEEeccCC
Confidence 1 1223345566666666666
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.17 E-value=5.7e-08 Score=95.69 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=68.7
Q ss_pred EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCcc--CCCCc---CCcchhhhcCccc----cccccccccCCCCCCEE
Q 039239 2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKR--LPEFS---SAGNIEEICGCKR----LKSLPSSICKLKSLKVL 71 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~--~p~~~---~~l~l~~L~~~~~----l~~lP~~i~~L~~L~~L 71 (323)
|+|++|.+....+..+. .+++|++|+|++|...+. ++... ..++..++++|.- ...++.....+++|+.|
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence 67888875555555553 578888888888854433 33222 1222333444441 11233333466788888
Q ss_pred EeeCCCCCCCCC-----cccCCCcccceeecccc-ccccCChhHHhcccccceeEcc
Q 039239 72 NLDGCSNIQKLP-----HELGNLEALNSLYAKGI-ATTEVPSSVVRLNNKLYELSSD 122 (323)
Q Consensus 72 ~Ls~n~~~~~lp-----~~l~~l~~L~~L~L~~n-~i~~lP~~i~~l~~~L~~L~l~ 122 (323)
++++|. +.+. ..+..+++|++|++++| .++.+|..+..++ +|+.|++.
T Consensus 190 ~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~ 243 (594)
T 2p1m_B 190 NISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTG 243 (594)
T ss_dssp ECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECS
T ss_pred EecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccc
Confidence 888775 2222 12344577888888877 3455666777777 77777654
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=3.4e-07 Score=77.20 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=72.3
Q ss_pred cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC----CCcccCCCccc
Q 039239 17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK----LPHELGNLEAL 92 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~l~~L 92 (323)
+...++|++|+|++|..++. .....+...+...++|++|+|++|.+... +.+.+...++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred HhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 45677788888887622221 12223444555667888888888875432 33445555778
Q ss_pred ceeecccccccc-----CChhHHhcccccceeEc--cCCCCCCCCCCCcceec---CccccccCCCCCeecCCCC
Q 039239 93 NSLYAKGIATTE-----VPSSVVRLNNKLYELSS--DRSRRGDKQMGLLLPIT---LSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 93 ~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l--~~~n~~~~~~~~L~~l~---L~~~l~~l~~L~~L~Ls~N 157 (323)
++|++++|.|+. +...+...+ .|+.|++ + +|. +..-. +...+...++|++|+|++|
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~-~N~-------i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQ-SQP-------LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCC-SSC-------CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCC-CCC-------CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 888888888753 455566666 7888888 5 565 22211 1234456678888888888
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.07 E-value=4.4e-07 Score=89.27 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=73.8
Q ss_pred CCCCCCCEEeeeCCCCCccCCCCc----CCcchhhhcCcccccc--ccccccCCCCCCEEEeeCCCCCCCCCc----ccC
Q 039239 18 SNLESLKKLNLSGCSKLKRLPEFS----SAGNIEEICGCKRLKS--LPSSICKLKSLKVLNLDGCSNIQKLPH----ELG 87 (323)
Q Consensus 18 ~~L~~L~~L~Ls~c~~l~~~p~~~----~~l~l~~L~~~~~l~~--lP~~i~~L~~L~~L~Ls~n~~~~~lp~----~l~ 87 (323)
..+++|++|+|++|......+..+ ..++..++.+|..++. ++..+.++++|++|++++|.+.+..++ ...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 358899999999997655433222 2333445667766654 566566899999999999986554333 334
Q ss_pred CCcccceeeccccc--cc--cCChhHHhcccccceeEccCCCC
Q 039239 88 NLEALNSLYAKGIA--TT--EVPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 88 ~l~~L~~L~L~~n~--i~--~lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+++|++|++++|. ++ .++..+..++ +|+.|+++ +|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~-~L~~L~L~-~~~ 222 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCP-NLKSLKLN-RAV 222 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCT-TCCEEECC-TTS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCC-CCcEEecC-CCC
Confidence 67799999999987 31 2333345667 99999999 773
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=3e-05 Score=70.83 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=70.3
Q ss_pred ccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccc-eeeccccccccCC-hhHHhcccccceeEccCCCCCCCC
Q 039239 54 RLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALN-SLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQ 130 (323)
Q Consensus 54 ~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~-~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~ 130 (323)
.+..+|+ .|.++++|+.+++++| +...-+..|.++.+|+ .+++.+ .++.++ .++..++ +|+.++++ ++.
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l~-~n~---- 308 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVLAT-GDK---- 308 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEEEC-SSC----
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEEeC-CCc----
Confidence 4666665 4788999999999986 4443445689999999 999988 787775 6788888 99999998 777
Q ss_pred CCCcceecCccccccCCCCCeecC
Q 039239 131 MGLLLPITLSIDGLHMTDLRHFDL 154 (323)
Q Consensus 131 ~~~L~~l~L~~~l~~l~~L~~L~L 154 (323)
++.+. +..|.++++|+.++.
T Consensus 309 ---i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 309 ---ITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp ---CCEEC-TTTTCTTCCCCEEEC
T ss_pred ---cCccc-hhhhcCCcchhhhcc
Confidence 77773 357889999998864
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=2e-06 Score=80.53 Aligned_cols=122 Identities=14% Similarity=0.007 Sum_probs=82.1
Q ss_pred EEecCCCCCCcCCccc-CCCCCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccc-----cccccccCCCC
Q 039239 2 LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLK-----SLPSSICKLKS 67 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i-~~L~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~-----~lP~~i~~L~~ 67 (323)
|+|++|.+...-...+ ..+++|++|+|++|.....-...+ ..+...++++|. ++ .++..+..+++
T Consensus 106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSS
T ss_pred EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCC
Confidence 7888887543222222 235688999999986543211111 122233445543 33 35666778899
Q ss_pred CCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhcccccceeEccCCCC
Q 039239 68 LKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 68 L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
|++|+|++|.+.. .+++.+...++|++|++++|.|+. ++..+...+ +|+.|+++ +|.
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-~L~~L~Ls-~N~ 250 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-SLELLHLY-FNE 250 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-SCCEEECT-TSS
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-CCCEEecc-CCC
Confidence 9999999998653 235567778899999999999963 455666778 99999999 887
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.77 E-value=3.2e-05 Score=72.17 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=8.3
Q ss_pred cCCCCCCCEEeeeCC
Q 039239 17 ISNLESLKKLNLSGC 31 (323)
Q Consensus 17 i~~L~~L~~L~Ls~c 31 (323)
+..+++|+.|+|++|
T Consensus 168 l~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTCTTCCEEEEECC
T ss_pred HhcCCCCcEEEEeCC
Confidence 344556666666554
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=3.3e-05 Score=68.94 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCCCCEEEeeCCCCCC--CCCcccCCCcccceeeccccccccCChhHHhccc-ccceeEccCCCC
Q 039239 64 KLKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN-KLYELSSDRSRR 126 (323)
Q Consensus 64 ~L~~L~~L~Ls~n~~~~--~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~-~L~~L~l~~~n~ 126 (323)
++++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|.|..+ ..+..+.. +|++|+++ +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~-~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD-GNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT-TST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc-CCc
Confidence 45566666666665554 3444455566666666666666544 22222221 45666666 555
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=7.9e-06 Score=68.72 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=76.8
Q ss_pred EEecCC-CCCC----cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCC
Q 039239 2 LDLSDC-KSLK----SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC 76 (323)
Q Consensus 2 L~Ls~n-~~l~----~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n 76 (323)
|+|++| .+.. .+...+...++|++|+|++|..... ....+...+...++|++|+|++|
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-----------------g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-----------------VAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-----------------HHHHHHHHHHHCSSCCEEECCSS
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-----------------HHHHHHHHHHhCCCcCEEECcCC
Confidence 788888 5332 2455567789999999999753211 12234444556688999999999
Q ss_pred CCCCC----CCcccCCCcccceeec--ccccccc-----CChhHHhcccccceeEccCCCC
Q 039239 77 SNIQK----LPHELGNLEALNSLYA--KGIATTE-----VPSSVVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 77 ~~~~~----lp~~l~~l~~L~~L~L--~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~ 126 (323)
.+... +.+.+...++|++|++ ++|.|+. +...+...+ +|+.|+++ +|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~-~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYH-FTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECC-CSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEecc-CCC
Confidence 87643 4566778889999999 8899863 455666667 89999999 776
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.62 E-value=0.00019 Score=67.77 Aligned_cols=91 Identities=11% Similarity=0.113 Sum_probs=40.0
Q ss_pred ccCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
|.++++|+.+++..+ ...++ ..|.+ .+|+.+.+ .+.+..++ .++..++ +|+.+.+. ++.... ..+..+.
T Consensus 222 F~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~-~L~~l~l~-~~~~~~--~~~~~I~- 292 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCP-ELAEVTTY-GSTFND--DPEAMIH- 292 (401)
T ss_dssp TTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCT-TCCEEEEE-SSCCCC--CTTCEEC-
T ss_pred hhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCC-CCCEEEeC-CccccC--CcccEEC-
Confidence 444555555555542 22222 22333 45555555 23344442 3444555 56666655 333100 0011221
Q ss_pred ccccccCCCCCeecCCCCc-ccC
Q 039239 140 SIDGLHMTDLRHFDLSGNF-KLD 161 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~Nl-~lP 161 (323)
...|.++++|+.+++.+++ .|+
T Consensus 293 ~~aF~~c~~L~~l~l~~~i~~I~ 315 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPESIRILG 315 (401)
T ss_dssp TTTTTTCTTCCEECCCTTCCEEC
T ss_pred HHHhhCCccCCeEEeCCceEEEh
Confidence 2445566666666666444 444
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=5.4e-05 Score=63.21 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=64.6
Q ss_pred cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc-ccc-CChhHHhc---ccccceeEccCCCCCCCCC
Q 039239 57 SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA-TTE-VPSSVVRL---NNKLYELSSDRSRRGDKQM 131 (323)
Q Consensus 57 ~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~-i~~-lP~~i~~l---~~~L~~L~l~~~n~~~~~~ 131 (323)
.+|.....-.+|+.||+++|.+...--..+..+++|++|++++|. |+. -=..+..+ ..+|+.|+++ +|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~---- 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGN---- 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTT----
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCc----
Confidence 456543334579999999998665433557889999999999996 642 11234432 1279999999 8864
Q ss_pred CCcceecCccccccCCCCCeecCCCC
Q 039239 132 GLLLPITLSIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N 157 (323)
++.-.+ ..+.++++|++|++++|
T Consensus 127 --ITD~Gl-~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 127 --VTDKGI-IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp --CCHHHH-HHGGGCTTCCEEEEESC
T ss_pred --CCHHHH-HHHhcCCCCCEEECCCC
Confidence 333322 24578999999999999
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=3.5e-05 Score=68.76 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCcccceeecccccccc---CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCC--CCCeecCCCC-c--
Q 039239 87 GNLEALNSLYAKGIATTE---VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMT--DLRHFDLSGN-F-- 158 (323)
Q Consensus 87 ~~l~~L~~L~L~~n~i~~---lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~--~L~~L~Ls~N-l-- 158 (323)
.++++|+.|+|++|.|.. +|..+..++ +|+.|+|+ +|. ++.+ ..+..++ +|++|+|++| +
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls-~N~-------i~~~---~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLS-GNE-------LKSE---RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECT-TSC-------CCSG---GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECC-CCc-------cCCc---hhhhhcccCCcceEEccCCcCcc
Confidence 467899999999999965 457788999 99999999 888 5554 2334444 9999999999 7
Q ss_pred ccC
Q 039239 159 KLD 161 (323)
Q Consensus 159 ~lP 161 (323)
.+|
T Consensus 235 ~~~ 237 (267)
T 3rw6_A 235 TFR 237 (267)
T ss_dssp GCS
T ss_pred ccC
Confidence 565
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.46 E-value=0.00087 Score=63.18 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=33.1
Q ss_pred CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc-----cCC-hhHHhcccccceeEcc
Q 039239 66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT-----EVP-SSVVRLNNKLYELSSD 122 (323)
Q Consensus 66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~-----~lP-~~i~~l~~~L~~L~l~ 122 (323)
.+|+.+.+.. ++...-...|.++++|+.+++.++.+. .++ ..+..++ +|+.+.+.
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~ 308 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIP 308 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCC
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeC
Confidence 5677777754 333333455677777777777666553 343 3555666 67777665
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.39 E-value=3.6e-05 Score=64.32 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC-CCcccCCC-
Q 039239 12 SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK-LPHELGNL- 89 (323)
Q Consensus 12 ~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~l- 89 (323)
.+|.....-..|+.||+++|.. .. ..+. .+.++++|+.|+|++|..++. --..++.+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~I-td----------------~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~ 110 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCI-MS----------------IGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCC-CG----------------GGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCH
T ss_pred cCCcccCCCceEeEEeCcCCCc-cH----------------HHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcc
Confidence 4565433345799999999852 11 1121 245788999999999975433 11234444
Q ss_pred ---cccceeeccccc-ccc-CChhHHhcccccceeEccCCCCC
Q 039239 90 ---EALNSLYAKGIA-TTE-VPSSVVRLNNKLYELSSDRSRRG 127 (323)
Q Consensus 90 ---~~L~~L~L~~n~-i~~-lP~~i~~l~~~L~~L~l~~~n~~ 127 (323)
++|++|++++|. |+. -=..+..++ +|+.|+++ +|..
T Consensus 111 ~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~-~L~~L~L~-~c~~ 151 (176)
T 3e4g_A 111 NLQKSMLEMEIISCGNVTDKGIIALHHFR-NLKYLFLS-DLPG 151 (176)
T ss_dssp HHHHHCCEEEEESCTTCCHHHHHHGGGCT-TCCEEEEE-SCTT
T ss_pred cccCCCCEEEcCCCCcCCHHHHHHHhcCC-CCCEEECC-CCCC
Confidence 369999999985 652 113567788 99999999 8874
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.88 E-value=0.00032 Score=65.30 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=77.9
Q ss_pred EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCC--CCC
Q 039239 2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC--SNI 79 (323)
Q Consensus 2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n--~~~ 79 (323)
|+|++|... .++. +. +++|+.|+|..|...... +..+ ....+++|+.|+|+.+ ...
T Consensus 177 L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~-----------------l~~l--~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 177 LKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV-----------------VEDI--LGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp EEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH-----------------HHHH--HHSBCTTCCEEEEECBCGGGT
T ss_pred EEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH-----------------HHHH--HHccCCCCcEEEEeccccccc
Confidence 677776322 3454 54 899999999986422110 0001 0126788999998642 111
Q ss_pred CC-----CCccc--CCCcccceeeccccccc-cCChhHH---hcccccceeEccCCCCCCCCCCCcceec---Ccccccc
Q 039239 80 QK-----LPHEL--GNLEALNSLYAKGIATT-EVPSSVV---RLNNKLYELSSDRSRRGDKQMGLLLPIT---LSIDGLH 145 (323)
Q Consensus 80 ~~-----lp~~l--~~l~~L~~L~L~~n~i~-~lP~~i~---~l~~~L~~L~l~~~n~~~~~~~~L~~l~---L~~~l~~ 145 (323)
+. +...+ ..+++|++|++.+|.++ ..+..+. .++ +|++|+++ .|. +.... +...+.+
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~L~~LdLs-~n~-------L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-QLETMDIS-AGV-------LTDEGARLLLDHVDK 305 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-GCSEEECC-SSC-------CBHHHHHHHHTTHHH
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-CCCEEECC-CCC-------CChHHHHHHHhhccc
Confidence 11 11222 35789999999999885 2334444 467 89999999 776 44321 1234467
Q ss_pred CCCCCeecCCCC
Q 039239 146 MTDLRHFDLSGN 157 (323)
Q Consensus 146 l~~L~~L~Ls~N 157 (323)
+++|+.|++++|
T Consensus 306 l~~L~~L~L~~n 317 (362)
T 2ra8_A 306 IKHLKFINMKYN 317 (362)
T ss_dssp HTTCSEEECCSB
T ss_pred CCcceEEECCCC
Confidence 899999999999
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.87 E-value=0.0021 Score=54.49 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=19.9
Q ss_pred ccCCCCCCEEEeeCCCCCC----CCCcccCCCcccceeeccccccc
Q 039239 62 ICKLKSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATT 103 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~ 103 (323)
+..-+.|+.|+|++|.+.. .+-+.+..-+.|++|+|++|.|+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334555666665554431 12222333345566666666554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.93 E-value=0.021 Score=44.83 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred EEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCC
Q 039239 70 VLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRR 126 (323)
Q Consensus 70 ~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~ 126 (323)
.++.+++.+. ..+|..+ -.+|++|+|++|.|+.+|.. +..++ +|+.|+|. +|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLG-ANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECC-SSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcc-ccCEEEec-CCC
Confidence 4555554432 2555443 23566667777766666543 34455 66666666 554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.79 E-value=0.13 Score=47.27 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred cCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCCh-hHHhcccccceeEcc
Q 039239 63 CKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSD 122 (323)
Q Consensus 63 ~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~ 122 (323)
.++.+|+.+.+..+ ...++ ..|..+.+|+.+.+.++.++.++. ++.++. +|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECC
T ss_pred ceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCC-CCCEEEcC
Confidence 34455555555432 22222 234555555555555555555432 344444 55555553
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.73 E-value=0.032 Score=43.71 Aligned_cols=49 Identities=24% Similarity=0.188 Sum_probs=38.0
Q ss_pred cccc--cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc
Q 039239 53 KRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT 103 (323)
Q Consensus 53 ~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~ 103 (323)
+.++ ++|..+ -.+|++|+|++|.+...-+..|..+++|+.|+|++|.+.
T Consensus 18 ~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 18 RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455 677654 247999999998876655567888999999999999873
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.46 E-value=0.092 Score=48.66 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=47.2
Q ss_pred ccCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
+.++++|+.+.+.. . ...++ ..|.++.+|+.+++..+ ++.|. .++..+. +|+.+.+. .+ ++.+.
T Consensus 284 F~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip-~s--------v~~I~- 349 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIP-SS--------VTKIP- 349 (394)
T ss_dssp TTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEC-TT--------CCBCC-
T ss_pred cccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEEC-cc--------cCEEh-
Confidence 44566777777653 2 22333 35666777777777543 44453 3455566 67777664 22 33332
Q ss_pred ccccccCCCCCeecCCCC
Q 039239 140 SIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~N 157 (323)
..+|.++++|+.+++.++
T Consensus 350 ~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECCc
Confidence 245667777777777766
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.34 E-value=0.022 Score=48.13 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=60.1
Q ss_pred cCCCCCCEEEeeCCCCCCC-----CCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCC
Q 039239 63 CKLKSLKVLNLDGCSNIQK-----LPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMG 132 (323)
Q Consensus 63 ~~L~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~ 132 (323)
.+-+.|++|+|++|+.++. +-+.+..-+.|+.|+|++|.|+ .+-..+..-+ .|+.|+++ .|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~-~N~------ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVE-SNF------ 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECC-SSB------
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecC-CCc------
Confidence 4557899999998633332 3355677788999999999996 3455666667 89999999 776
Q ss_pred CcceecC---ccccccCCCCCeecCCCC
Q 039239 133 LLLPITL---SIDGLHMTDLRHFDLSGN 157 (323)
Q Consensus 133 ~L~~l~L---~~~l~~l~~L~~L~Ls~N 157 (323)
+..-.. ...+..-+.|++|+|++|
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 222111 134455667999999865
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.36 E-value=0.44 Score=43.53 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=53.1
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS 140 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~ 140 (323)
+.++..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .+..+. +|+.+.+. ++. ++.+. .
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~-~~~-------i~~I~-~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMD-NSA-------IETLE-P 303 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEEC-CTT-------CCEEC-T
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc-cccccccc-ccc-------cceeh-h
Confidence 445667777777653 22222345666777777777543 555543 455566 77777776 554 45552 2
Q ss_pred cccccCCCCCeecCCCCc-ccC
Q 039239 141 IDGLHMTDLRHFDLSGNF-KLD 161 (323)
Q Consensus 141 ~~l~~l~~L~~L~Ls~Nl-~lP 161 (323)
.+|.++++|+.++|..++ .|.
T Consensus 304 ~aF~~c~~L~~i~lp~~l~~I~ 325 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTALKTIQ 325 (379)
T ss_dssp TTTTTCTTCCEEECCTTCCEEC
T ss_pred hhhcCCCCCCEEEcCccccEEH
Confidence 467777788887776554 554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.31 E-value=0.15 Score=47.11 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=72.3
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITL 139 (323)
Q Consensus 61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L 139 (323)
.+.++++|+.+.+..+ ....-...+.++.+|+.+.+. +.+..++. .+..+. +|+.+.+. .+ ++.+.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp-~~--------v~~I~- 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIP-EG--------ITQIL- 326 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECC-TT--------CCEEC-
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCC-CcCEEEeC-Cc--------ccEeh-
Confidence 4667889999999763 333333567889999999986 45667765 566677 89999986 43 45553
Q ss_pred ccccccCCCCCeecCCCCc-ccCccccccccchhhhhhhhhhh
Q 039239 140 SIDGLHMTDLRHFDLSGNF-KLDRKEVRGIFEDALQDIQLMAA 181 (323)
Q Consensus 140 ~~~l~~l~~L~~L~Ls~Nl-~lP~~~L~~L~~~sL~~l~l~~n 181 (323)
..+|.++++|+.+.+..++ .|....+... .+|+.+.+..+
T Consensus 327 ~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C--~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSSVTKIPESAFSNC--TALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEEECTTCCBCCGGGGTTC--TTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECcccCEEhHhHhhCC--CCCCEEEECCc
Confidence 3578899999999997765 6664333333 55666554443
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.37 E-value=0.36 Score=44.59 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=6.9
Q ss_pred CCCCCCEEeeeC
Q 039239 19 NLESLKKLNLSG 30 (323)
Q Consensus 19 ~L~~L~~L~Ls~ 30 (323)
...+|+.+.+..
T Consensus 228 ~~~~l~~i~ip~ 239 (394)
T 4fs7_A 228 SKTGVKNIIIPD 239 (394)
T ss_dssp TTCCCCEEEECT
T ss_pred ccCCCceEEECC
Confidence 345666666643
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.36 E-value=0.53 Score=43.39 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=10.5
Q ss_pred ccCCCCCCCEEeeeC
Q 039239 16 EISNLESLKKLNLSG 30 (323)
Q Consensus 16 ~i~~L~~L~~L~Ls~ 30 (323)
.|.++++|+.+.+.+
T Consensus 157 aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 157 AFATCESLEYVSLPD 171 (394)
T ss_dssp TTTTCTTCCEEECCT
T ss_pred hhcccCCCcEEecCC
Confidence 466677888877754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.72 E-value=95 Score=22.31 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=21.1
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239 62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI 100 (323)
Q Consensus 62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n 100 (323)
|.++++|+.+.|..+ ....-...|.++.+|+.+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 555666666666552 22222345666667766666543
Done!