BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039243
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G IP I S+ L LNL +N++ G IP + +L + LDLSSNKL G+IPQ ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEA 118
LT L D+S+N+L G IP+ QF TF F NPGLCG PL +C S A
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N GEIP + +K L+TL L N+L G IP LSN T + + LS+N+LTG+IP+ +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 66 ELTSLAFFDVSHNHLRGAIP 85
L +LA +S+N G IP
Sbjct: 512 RLENLAILKLSNNSFSGNIP 531
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
+IL N+ GEIP+ +++ L ++LSNN L G IP + L + L LS+N +G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQG--TQFSTFANDWFAG 100
P +L + SL + D++ N G IP Q A ++ AG
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
+ L +N F G+IP ++++ L +L+LS N L G IP +L +L+ + L L N L G+I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGE 107
PQ+L + +L + N L G IP G T N N L GE
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G IP+S+ SL L+ L L N L G IP L + +E+L L N LTG+IP L+
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 66 ELTSLAFFDVSHNHLRGAIP------QGTQFSTFANDWFAGN 101
T+L + +S+N L G IP + +N+ F+GN
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 3 LLDNNFVGEI-PTSIASLKG-LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
L NNF G I P + K LQ L L NN G IP TLSN + + SL LS N L+G I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQ 86
P L L+ L + N L G IPQ
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G++ ++ L+ L++S+NN IP L + + ++ LD+S NKL+G + ++
Sbjct: 188 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 66 ELTSLAFFDVSHNHLRGAIP----QGTQFSTFANDWFAGNPGLCGEPLSGKC 113
T L ++S N G IP + Q+ + A + F G + LSG C
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE---IPDFLSGAC 293
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 3 LLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
L +N F GEIP ++ + L L+LS N+ G +P + +++ESL LSSN +G++P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 62 QQ-LAELTSLAFFDVSHNHLRGAIPQG-TQFST------FANDWFAGN--PGLCGEP 108
L ++ L D+S N G +P+ T S +++ F+G P LC P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 14 TSIASLKGLQTLNLSNNNLRGYIPLTLS---NLTVIESLDLSSNKLTGQ------IPQQL 64
TS+ S GL+ LN+S+N L P +S L +E LDLS+N ++G +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177
Query: 65 AELTSLA-------------------FFDVSHNHLRGAIP 85
EL LA F DVS N+ IP
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G IP I S+ L LNL +N++ G IP + +L + LDLSSNKL G+IPQ ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEA 118
LT L D+S+N+L G IP+ QF TF F NPGLCG PL +C S A
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 750
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N GEIP + +K L+TL L N+L G IP LSN T + + LS+N+LTG+IP+ +
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 66 ELTSLAFFDVSHNHLRGAIP 85
L +LA +S+N G IP
Sbjct: 509 RLENLAILKLSNNSFSGNIP 528
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
+IL N+ GEIP+ +++ L ++LSNN L G IP + L + L LS+N +G I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQG--TQFSTFANDWFAG 100
P +L + SL + D++ N G IP Q A ++ AG
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
+ L +N F G+IP ++++ L +L+LS N L G IP +L +L+ + L L N L G+I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGE 107
PQ+L + +L + N L G IP G T N N L GE
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G IP+S+ SL L+ L L N L G IP L + +E+L L N LTG+IP L+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 66 ELTSLAFFDVSHNHLRGAIP------QGTQFSTFANDWFAGN 101
T+L + +S+N L G IP + +N+ F+GN
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 3 LLDNNFVGEI-PTSIASLKG-LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
L NNF G I P + K LQ L L NN G IP TLSN + + SL LS N L+G I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQ 86
P L L+ L + N L G IPQ
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
N G++ ++ L+ L++S+NN IP L + + ++ LD+S NKL+G + ++
Sbjct: 185 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 66 ELTSLAFFDVSHNHLRGAIP----QGTQFSTFANDWFAGNPGLCGEPLSGKC 113
T L ++S N G IP + Q+ + A + F G + LSG C
Sbjct: 242 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE---IPDFLSGAC 290
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 3 LLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
L +N F GEIP ++ + L L+LS N+ G +P + +++ESL LSSN +G++P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 62 QQ-LAELTSLAFFDVSHNHLRGAIPQG-TQFST------FANDWFAGN--PGLCGEP 108
L ++ L D+S N G +P+ T S +++ F+G P LC P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 14 TSIASLKGLQTLNLSNNNLRGYIPLTLS---NLTVIESLDLSSNKLTGQ------IPQQL 64
TS+ S GL+ LN+S+N L P +S L +E LDLS+N ++G +
Sbjct: 117 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 174
Query: 65 AELTSLA-------------------FFDVSHNHLRGAIP 85
EL LA F DVS N+ IP
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 214
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
NN VG IP +IA L L L +++ N+ G IP LS + + +LD S N L+G +P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 66 ELTSLAFFDVSHNHLRGAIPQ 86
L +L N + GAIP
Sbjct: 147 SLPNLVGITFDGNRISGAIPD 167
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLR---GYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
N G+ S K Q ++L+ N+L G + L+ + + LDL +N++ G +PQ
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN----LNGLDLRNNRIYGTLPQ 262
Query: 63 QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL 109
L +L L +VS N+L G IPQG F +A N LCG PL
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT-VIESLDLSSNKLTGQIPQQL 64
N G +P SI+SL L + N + G IP + + + + S+ +S N+LTG+IP
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 65 AELTSLAFFDVSHNHLRG 82
A L +LAF D+S N L G
Sbjct: 195 ANL-NLAFVDLSRNMLEG 211
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 3 LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP 37
L +N G +P + LK L +LN+S NNL G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ LN S+N + PL +NLT +E LD+SSNK++
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISV 190
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 191 LAKLTNLESLIATNNQISDITPLG 214
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--I 144
Query: 62 QQLAELTSLAFFDVSHNHLRGAIP 85
L+ LTSL + S N + P
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP 168
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
+ LD N +P +++ K L ++LSNN + + SN+T + +L LS N+L P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 62 QQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLC 105
+ L SL + N + +P+G S ++ NP C
Sbjct: 96 RTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYC 140
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
+++L+ N + +P I + L TL++SNNNL T T +++L LSSN+LT
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 185
Query: 60 IPQQLAELTSLAFFDVSHNHLRG-AIP 85
L+ + SL +VS+N L AIP
Sbjct: 186 --VDLSLIPSLFHANVSYNLLSTLAIP 210
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT-----GQ-IPQQLAELTSLAFFD 74
GL ++LS N L + + +E L +S+N+L GQ IP +L D
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLKVLD 307
Query: 75 VSHNHLRGAIPQGTQFSTFANDWFAGN 101
+SHNHL QF N + N
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHN 334
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ L+ S+N + PL +NLT +E LD+SSNK++
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISV 190
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 191 LAKLTNLESLIATNNQISDITPLG 214
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--I 144
Query: 62 QQLAELTSLAFFDVSHNHLRGAIP 85
L+ LTSL S N + P
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ L+ S+N + PL +NLT +E LD+SSNK++
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISV 190
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 191 LAKLTNLESLIATNNQISDITPLG 214
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--I 144
Query: 62 QQLAELTSLAFFDVSHNHLRGAIP 85
L+ LTSL S N + P
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ +P I + K Q L L+NN + P +L ++ L +SNKLT +LT
Sbjct: 24 LASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 69 SLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLC 105
L D++ NHL+ +IP+G + + + NP C
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAEL-TSLA 71
PT+ SL LQ LN+S+NN L ++ LD S N + Q+L +SLA
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570
Query: 72 FFDVSHN 78
F +++ N
Sbjct: 571 FLNLTQN 577
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 19 LKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
L L+ L ++ N+ + ++P + L + LDLS +L P L+SL ++SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 78 NHL 80
N+
Sbjct: 528 NNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAEL-TSLA 71
PT+ SL LQ LN+S+NN L ++ LD S N + Q+L +SLA
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Query: 72 FFDVSHN 78
F +++ N
Sbjct: 547 FLNLTQN 553
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 19 LKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
L L+ L ++ N+ + ++P + L + LDLS +L P L+SL ++SH
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 78 N 78
N
Sbjct: 504 N 504
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
++ L+ N I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAEL-TSLA 71
PT+ SL LQ LN+S+NN L ++ LD S N + Q+L +SLA
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 72 FFDVSHN 78
F +++ N
Sbjct: 252 FLNLTQN 258
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 19 LKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
L L+ L ++ N+ + ++P + L + LDLS +L P L+SL ++SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 78 N 78
N
Sbjct: 209 N 209
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ +PT I + Q L L +N + P LT + LDL +N+LT +LT
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 69 SLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCG 106
L ++ N L+ +IP+G + + W NP C
Sbjct: 79 QLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 117
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ +PT I + Q L L +N + P LT + LDL +N+LT +LT
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 69 SLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCG 106
L ++ N L+ +IP+G + + W NP C
Sbjct: 79 QLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPWDCA 117
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKL 56
I LK L+ LN+++N ++ + +P SNLT +E LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 19 LKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
L L+ L ++ N+ + ++P + L + LDLS +L P L+SL +++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 78 NHLRGAIPQGT--QFSTFANDWFAGNPGLCGEP 108
N L+ ++P G + ++ W NP C P
Sbjct: 504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
PT+ SL LQ LN+++N L+ LT ++ + L +N P+
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ +PT I + Q L L +N + P LT + LDL +N+LT +LT
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 69 SLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCG 106
L ++ N L+ +IP+G + + W NP C
Sbjct: 87 QLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 125
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
++ L++N + +P I LK L+TL +++N L+ L + L L N+L
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124
Query: 60 IPQQLAELTSLAFFDVSHNHLRGAIPQG 87
P+ LT L + + +N L+ ++P+G
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQ-SLPKG 151
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 6 NNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
+N + +P + L L L L N L+ P +LT + L L N+L
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 65 AELTSLAFFDVSHNHLR----GAIPQGTQFSTFAND 96
+LTSL + +N L+ GA + T+ T D
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLT-- 57
+ L DN P SL L+ L L +N L G +P+ +LT + LDL +N+LT
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 58 ---------------------GQIPQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFA 94
++P+ + LT L + N L+ +IP G + S+
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLT 162
Query: 95 NDWFAGNPGLC 105
+ + GNP C
Sbjct: 163 HAYLFGNPWDC 173
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
++L++N L L LNL++N L+ LT + LDLS N+L
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCGEP 108
+LT L + N L+ ++P G + ++ W NP C P
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 2 ILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
++L N + +P + L L+ L L N L+ LT + L+L+ N+L
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQG 87
+LT+L D+S+N L+ ++P+G
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ-SLPEG 175
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 14 TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
+++ L L L L+ N L+ LT ++ L L N+L +LT+L +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 74 DVSHNHLRGAIPQGTQFSTFAN 95
+++HN L+ ++P+G F N
Sbjct: 139 NLAHNQLQ-SLPKGV-FDKLTN 158
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ LN N + PL +NLT +E LD+SSNK++
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLNFGNQ-VTDLKPL--ANLTTLERLDISSNKVSD--ISV 189
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 190 LAKLTNLESLIATNNQISDITPLG 213
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 289 LNENQLEDISP 299
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---- 57
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISA 146
Query: 58 -------------GQIP--QQLAELTSLAFFDVSHNHL 80
Q+ + LA LT+L D+S N +
Sbjct: 147 LSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ LN N + PL +NLT +E LD+SSNK++
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLNFGNQ-VTDLKPL--ANLTTLERLDISSNKVSD--ISV 189
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 190 LAKLTNLESLIATNNQISDITPLG 213
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 289 LNENQLEDISP 299
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---- 57
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISA 146
Query: 58 -------------GQIP--QQLAELTSLAFFDVSHNHL 80
Q+ + LA LT+L D+S N +
Sbjct: 147 LSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
+++L+ N + +P I + L TL++SNNNL T T +++L LSSN+LT
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 179
Query: 60 IPQQLAELTSLAFFDVSHNHLRG-AIPQGTQ 89
L+ + SL +VS+N L AIP +
Sbjct: 180 --VDLSLIPSLFHANVSYNLLSTLAIPIAVE 208
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT-----GQ-IPQQLAELTSLAFFD 74
GL ++LS N L + + +E L +S+N+L GQ IP +L D
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLKVLD 301
Query: 75 VSHNHLRGAIPQGTQFSTFANDWFAGN 101
+SHNHL QF N + N
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHN 328
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 293 LNENQLEDISP 303
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---- 57
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 94 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISA 150
Query: 58 -------------GQIP--QQLAELTSLAFFDVSHNHL 80
Q+ + LA LT+L D+S N +
Sbjct: 151 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 188
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ L+ N + PL +NLT +E LD+SSNK++
Sbjct: 140 LSSNTISDI-SALSGLTSLQQLSFGNQ-VTDLKPL--ANLTTLERLDISSNKVSD--ISV 193
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 194 LAKLTNLESLIATNNQISDITPLG 217
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
++ASL L L+L+NN + P LS LT + L L +N+++ P LA LT+L +
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 75 VSHNHLRGAIP 85
++ N L P
Sbjct: 294 LNENQLEDISP 304
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---- 57
IL++NN + +I T +A+L L L L NN + PL NLT + L+LSSN ++
Sbjct: 95 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISA 151
Query: 58 -------------GQIP--QQLAELTSLAFFDVSHNHL 80
Q+ + LA LT+L D+S N +
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
L +N + +I ++++ L LQ L+ N + PL +NLT +E LD+SSNK++
Sbjct: 141 LSSNTISDI-SALSGLTSLQQLSFGNQ-VTDLKPL--ANLTTLERLDISSNKVSD--ISV 194
Query: 64 LAELTSLAFFDVSHNHLRGAIPQG 87
LA+LT+L ++N + P G
Sbjct: 195 LAKLTNLESLIATNNQISDITPLG 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78
L L LNLS N L NL +E LDLS N + Q L +L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 79 HLRGAIPQG--TQFSTFANDWFAGNPGLCGEP 108
L+ ++P G + ++ W NP C P
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
+ + + L+ L L+ N + LT + L+LS N L + L L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 72 FFDVSHNHLRG 82
D+S+NH+R
Sbjct: 351 VLDLSYNHIRA 361
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
L NF+G I + + +L L+ L+LS N++R + L ++ L L +N+L
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 63 QLAELTSL 70
LTSL
Sbjct: 390 IFDRLTSL 397
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 16 IASLKGLQTLNLSNNNLRGY--IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
+ L+ LQ L+LS++++ L L NL ++ L+LS N+ G Q E L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 74 DVSHNHLRGAIPQG 87
DV+ HL P
Sbjct: 405 DVAFTHLHVKAPHS 418
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 2 ILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
+ L N + +P + L L LNLS N L+ LT ++ L L++N+L
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCGEP 108
+LT L + N L+ ++P G + ++ W NP C P
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 25 LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAI 84
L+L N+L+ LT + L L NKL +LTSL + ++S N L+ ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 85 PQG 87
P G
Sbjct: 92 PNG 94
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12 IPTSIASLKGLQTLNLSNNNL-RGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
+P S+ S L L+LS+NNL R T + LT + SL LS N L + + +L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 71 AFFDVSHNHLR 81
+ D+S NHL
Sbjct: 91 RYLDLSSNHLH 101
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT----GQIPQQLAEL------- 67
L LQ L L++N L P S+LT + L L+SN+LT +P L L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 68 --------TSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKC 113
SL+ D++HN + STF N N + G P C
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICE----CELSTFINWLNHTNVTIAGPPADIYC 588
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 4 LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---GQ 59
L NN + EI +LK L TL L NN + P + L +E L LS N+L +
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118
Query: 60 IPQQLAEL 67
+P+ L EL
Sbjct: 119 MPKTLQEL 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 4 LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---GQ 59
L NN + EI +LK L TL L NN + P + L +E L LS N+L +
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118
Query: 60 IPQQLAEL 67
+P+ L EL
Sbjct: 119 MPKTLQEL 126
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 14 TSIASLKGLQTLNLSNNNLRGYIPLT-LSNLTVIESLDLSSNKLTGQIPQQLAELTSLAF 72
++IA L+ ++TL+L++ + PL LSNL V+ LDL N++T P LA LT+L +
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY-LDL--NQITNISP--LAGLTNLQY 161
Query: 73 FDVSHNHLRGAIP 85
+ +N + P
Sbjct: 162 LSIGNNQVNDLTP 174
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
++ LD N + I + +A L LQ L++ NN + P L+NL+ + +L NK++
Sbjct: 139 VLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDIS 195
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIP 85
P LA L +L + N + P
Sbjct: 196 P--LASLPNLIEVHLKDNQISDVSP 218
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ---------QLAE 66
+ +L LQTLNLS+N G +E LDL+ +L PQ Q+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 67 LTSLAFFDVSHNHLRGAIP 85
LT F D S+ HL +P
Sbjct: 429 LT-YCFLDTSNQHLLAGLP 446
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
++L++N L L L L +N L+ LT + LDL +N+L
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 61 PQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFANDWFAGNPGLCG 106
+LT L ++ N L+ ++P G + ++ + W NP C
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNNPWDCA 220
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
+D + E+P + GL+TL L+ N LR +P ++++L + L + + ++P+
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEP 169
Query: 64 LA 65
LA
Sbjct: 170 LA 171
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 2 ILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
I L+ N + IP + + K L+ ++LSNN + P L + SL L NK+T ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 61 PQQLAE 66
P+ L E
Sbjct: 96 PKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 2 ILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
I L+ N + IP + + K L+ ++LSNN + P L + SL L NK+T ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 61 PQQLAE 66
P+ L E
Sbjct: 96 PKSLFE 101
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 4 LDNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIP 61
L+ N V + P + +L L+TL L +N L+ IPL + L+ + LD+S NK+ +
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD 121
Query: 62 QQLAELTSLAFFDVSHNHL 80
+L +L +V N L
Sbjct: 122 YMFQDLYNLKSLEVGDNDL 140
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN 54
++ L NN + IP + L+ LQ LN+++N L+ LT ++ + L N
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 22 LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81
++ L+L NN + IP +++L ++ L+++SN+L LTSL + + N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 82 GAIPQGTQFSTFANDWFAGNPGLCGE------PLSGKCGNS 116
P G + + ++W + G+ P S KC S
Sbjct: 511 CTCP-GIR---YLSEWINKHSGVVRNSAGSVAPDSAKCSGS 547
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
+ L+ N + E+P I +L L+ L+LS+N L +P L + ++ N +T +P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LP 309
Query: 62 QQLAELTSLAFFDVSHNHLR 81
+ L +L F V N L
Sbjct: 310 WEFGNLCNLQFLGVEGNPLE 329
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 29.6 bits (65), Expect = 0.99, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 150 YFDVSHEHLEGALDRFAQF 168
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 150 YFDVSHEHLEGALDRFAQF 168
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 109 YFDVSHEHLEGALDRFAQF 127
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 108 YFDVSHEHLEGALDRFAQF 126
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 150 YFDVSHEHLEGALDRFAQF 168
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 72 FFDVSHNHLRGAIPQGTQF 90
+FDVSH HL GA+ + QF
Sbjct: 121 YFDVSHEHLEGALDRFAQF 139
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
++ L +N + IP + L+ LQ LN+++N L+ LT ++ + L +N
Sbjct: 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 61 PQ 62
P+
Sbjct: 485 PR 486
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 14 TSIASLKGLQTLNLSNNNLRGYIPLT-LSNLTVIESLDLSSNKLTGQIPQQLAELTSLAF 72
++IA L+ ++TL+L++ + PL LSNL V+ LDL N++T P LA LT+L +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY-LDL--NQITNISP--LAGLTNLQY 155
Query: 73 FDVSHNHLRGAIP 85
+ + + P
Sbjct: 156 LSIGNAQVSDLTP 168
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain
Structure
Length = 680
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
++PT+I LNL++N LR + + + SLD+ N ++ P+ +L L
Sbjct: 22 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 71 AFFDVSHNHLRGAIPQGTQFST 92
++ HN L + F T
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCT 97
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
++PT+I LNL++N LR + + + SLD+ N ++ P+ +L L
Sbjct: 32 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 71 AFFDVSHNHLRGAIPQGTQFST 92
++ HN L + F T
Sbjct: 86 KVLNLQHNELSQLSDKTFAFCT 107
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN 54
L N + EI + L L+TLNL +N + +P + +L + SL+L+SN
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
++PT+I LNL++N LR + + + SLD+ N ++ P+ +L L
Sbjct: 27 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 71 AFFDVSHNHLRGAIPQGTQFST 92
++ HN L + F T
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCT 102
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 18 SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--IPQQLAELTSLAFFDV 75
+L LQ LN+S+NNL + L + +LD S N++ I Q + SLAFF++
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK--SLAFFNL 552
Query: 76 SHN 78
++N
Sbjct: 553 TNN 555
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 18 SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--IPQQLAELTSLAFFDV 75
+L LQ LN+S+NNL + L + +LD S N++ I Q + SLAFF++
Sbjct: 490 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK--SLAFFNL 547
Query: 76 SHN 78
++N
Sbjct: 548 TNN 550
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
S+ +L L+ L LS +L ++L ++ +DLS N+LT + L+ L + + +
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529
Query: 75 VSHNHLRGAIP 85
++ NH+ +P
Sbjct: 530 LASNHISIILP 540
>pdb|2L6X|A Chain A, Solution Nmr Structure Of Proteorhodopsin
Length = 243
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 111 GKCGNSEASPAEDDPPSE--FVLAFGWKIVLAGYASGTIIG 149
GK + ASPA + +++ FGW I GY +G ++G
Sbjct: 154 GKSACNTASPAVQSAYNTMMYIIIFGWAIYPVGYFTGYLMG 194
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNL 32
LDNN + +P + LK LQ + L NN+
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ IP+ + + +++L+LSNN + L +++L L+SN + + L
Sbjct: 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 69 SLAFFDVSHNHLRGAIPQGTQFSTFANDWFA 99
SL D+S+N+L S ++ WF
Sbjct: 101 SLEHLDLSYNYL----------SNLSSSWFK 121
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 106 GEPLSGKCGNSEAS--------PAEDDPPSEFVLAFGWKIVLAGYASGTIIG 149
G P + C NS AS P+E PP++F +G V A + +GT IG
Sbjct: 151 GIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIG 202
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 9 VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT 68
+ IP+ + + +++L+LSNN + L +++L L+SN + + L
Sbjct: 17 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 69 SLAFFDVSHNHLRGAIPQGTQFSTFANDWFA 99
SL D+S+N+L S ++ WF
Sbjct: 75 SLEHLDLSYNYL----------SNLSSSWFK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,464,575
Number of Sequences: 62578
Number of extensions: 222030
Number of successful extensions: 1051
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 233
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)