Query 039243
Match_columns 185
No_of_seqs 281 out of 2173
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 3.4E-20 7.5E-25 157.9 9.9 114 1-114 423-538 (623)
2 PLN00113 leucine-rich repeat r 99.7 7.6E-18 1.7E-22 150.2 9.5 108 1-108 504-611 (968)
3 PLN00113 leucine-rich repeat r 99.6 6.6E-15 1.4E-19 131.5 7.7 108 1-108 480-588 (968)
4 PLN03150 hypothetical protein; 99.3 2.2E-12 4.7E-17 110.4 5.1 88 21-108 419-507 (623)
5 KOG4237 Extracellular matrix p 99.2 8.3E-12 1.8E-16 98.6 3.2 102 8-109 261-364 (498)
6 PF13855 LRR_8: Leucine rich r 99.2 8.1E-12 1.8E-16 74.9 2.2 61 20-80 1-61 (61)
7 KOG0617 Ras suppressor protein 99.1 3.1E-12 6.7E-17 91.0 -1.8 101 1-104 38-140 (264)
8 KOG4194 Membrane glycoprotein 99.1 1E-11 2.3E-16 102.4 0.1 109 1-109 322-457 (873)
9 KOG4194 Membrane glycoprotein 99.1 1.1E-11 2.4E-16 102.3 -2.1 102 1-102 298-403 (873)
10 KOG0617 Ras suppressor protein 99.0 1.8E-11 3.8E-16 87.2 -1.9 102 1-104 61-163 (264)
11 PF13855 LRR_8: Leucine rich r 99.0 1E-10 2.2E-15 70.0 1.7 56 1-56 6-61 (61)
12 KOG0472 Leucine-rich repeat pr 99.0 6.2E-11 1.3E-15 94.1 0.6 97 2-103 212-309 (565)
13 PF14580 LRR_9: Leucine-rich r 99.0 4.9E-10 1.1E-14 81.0 4.9 97 1-103 24-125 (175)
14 KOG4237 Extracellular matrix p 99.0 2.7E-11 5.8E-16 95.8 -2.7 109 1-109 72-206 (498)
15 KOG0618 Serine/threonine phosp 98.8 5.8E-10 1.3E-14 96.2 -0.2 100 2-104 389-489 (1081)
16 KOG0472 Leucine-rich repeat pr 98.8 1.2E-09 2.7E-14 86.9 0.2 98 5-104 420-541 (565)
17 KOG0444 Cytoskeletal regulator 98.7 2.8E-09 6.1E-14 89.3 0.8 90 12-103 95-185 (1255)
18 PF14580 LRR_9: Leucine-rich r 98.7 1.5E-08 3.2E-13 73.3 3.4 78 1-81 47-126 (175)
19 KOG0618 Serine/threonine phosp 98.6 3.5E-09 7.6E-14 91.5 -1.4 100 1-102 364-463 (1081)
20 KOG1259 Nischarin, modulator o 98.6 8.9E-09 1.9E-13 79.5 0.7 77 1-81 289-365 (490)
21 KOG0444 Cytoskeletal regulator 98.6 6.9E-09 1.5E-13 87.0 -0.6 106 1-109 273-380 (1255)
22 KOG4579 Leucine-rich repeat (L 98.4 2.5E-08 5.4E-13 68.7 -1.0 82 2-86 59-140 (177)
23 PF12799 LRR_4: Leucine Rich r 98.4 2E-07 4.2E-12 51.9 2.7 36 21-57 2-37 (44)
24 KOG0532 Leucine-rich repeat (L 98.4 3.2E-08 7E-13 81.8 -1.1 97 3-104 150-247 (722)
25 KOG1859 Leucine-rich repeat pr 98.3 4.1E-08 8.9E-13 83.4 -2.8 102 1-107 192-295 (1096)
26 PF12799 LRR_4: Leucine Rich r 98.3 8.7E-07 1.9E-11 49.2 3.4 37 44-81 1-37 (44)
27 PRK15387 E3 ubiquitin-protein 98.3 7E-07 1.5E-11 78.0 4.0 76 20-104 382-458 (788)
28 PLN03210 Resistant to P. syrin 98.3 2.8E-06 6.1E-11 77.9 8.0 100 1-102 616-715 (1153)
29 KOG1259 Nischarin, modulator o 98.3 2.1E-07 4.5E-12 72.0 0.3 66 14-82 278-343 (490)
30 PRK15370 E3 ubiquitin-protein 98.2 2.9E-06 6.4E-11 74.1 7.1 72 1-81 204-275 (754)
31 PRK15370 E3 ubiquitin-protein 98.2 8.3E-07 1.8E-11 77.5 3.3 72 1-81 309-380 (754)
32 KOG4579 Leucine-rich repeat (L 98.2 7.8E-08 1.7E-12 66.2 -2.5 98 1-101 32-133 (177)
33 PLN03210 Resistant to P. syrin 98.2 5.6E-06 1.2E-10 75.9 8.4 98 1-100 783-902 (1153)
34 PRK15387 E3 ubiquitin-protein 98.2 1.7E-06 3.6E-11 75.7 4.6 33 45-81 383-415 (788)
35 COG4886 Leucine-rich repeat (L 98.1 1.2E-06 2.5E-11 71.3 2.2 96 2-101 122-219 (394)
36 KOG0532 Leucine-rich repeat (L 98.1 4.6E-07 1E-11 75.2 -1.6 76 2-81 81-156 (722)
37 cd00116 LRR_RI Leucine-rich re 98.0 1.2E-06 2.6E-11 68.8 -0.4 80 2-81 87-178 (319)
38 cd00116 LRR_RI Leucine-rich re 98.0 1.9E-06 4E-11 67.7 0.5 102 1-102 113-232 (319)
39 COG4886 Leucine-rich repeat (L 98.0 3.3E-06 7.2E-11 68.7 1.7 100 1-103 145-244 (394)
40 KOG4658 Apoptotic ATPase [Sign 97.9 6.5E-06 1.4E-10 73.2 2.6 90 8-98 559-649 (889)
41 KOG1644 U2-associated snRNP A' 97.9 3.1E-05 6.8E-10 56.8 5.3 83 19-103 41-125 (233)
42 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.4E-11 74.2 -3.7 93 4-101 172-264 (1096)
43 KOG4658 Apoptotic ATPase [Sign 97.6 2.3E-05 5E-10 69.8 1.9 78 1-79 576-653 (889)
44 KOG0531 Protein phosphatase 1, 97.6 2.8E-05 6.1E-10 63.9 2.3 83 17-103 115-198 (414)
45 KOG1644 U2-associated snRNP A' 97.6 7.1E-05 1.5E-09 54.9 3.4 78 1-81 47-126 (233)
46 KOG0531 Protein phosphatase 1, 97.6 1.9E-05 4.2E-10 64.8 0.4 84 15-102 90-173 (414)
47 KOG3207 Beta-tubulin folding c 97.2 0.00014 3.1E-09 58.9 1.3 80 1-81 227-314 (505)
48 KOG2739 Leucine-rich acidic nu 96.8 0.0017 3.6E-08 49.5 3.7 61 19-81 42-104 (260)
49 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 50.4 2.6 66 15-82 60-130 (260)
50 PF00560 LRR_1: Leucine Rich R 96.7 0.00069 1.5E-08 31.5 0.8 19 22-41 2-20 (22)
51 KOG3207 Beta-tubulin folding c 96.7 0.00032 7E-09 57.0 -0.8 39 66-104 220-259 (505)
52 KOG2982 Uncharacterized conser 96.5 0.001 2.3E-08 51.8 1.0 80 1-80 76-158 (418)
53 PF00560 LRR_1: Leucine Rich R 96.3 0.00082 1.8E-08 31.3 -0.2 20 45-65 1-20 (22)
54 KOG0473 Leucine-rich repeat pr 95.6 0.0002 4.3E-09 53.9 -6.5 77 2-81 48-124 (326)
55 PF13504 LRR_7: Leucine rich r 95.2 0.01 2.2E-07 25.7 1.0 9 23-31 4-12 (17)
56 KOG2123 Uncharacterized conser 95.2 0.0024 5.1E-08 49.5 -1.9 62 18-82 39-102 (388)
57 smart00369 LRR_TYP Leucine-ric 94.3 0.031 6.8E-07 26.8 1.5 14 44-57 2-15 (26)
58 smart00370 LRR Leucine-rich re 94.3 0.031 6.8E-07 26.8 1.5 14 44-57 2-15 (26)
59 KOG3665 ZYG-1-like serine/thre 94.2 0.045 9.8E-07 48.1 3.3 60 17-78 170-230 (699)
60 smart00370 LRR Leucine-rich re 94.1 0.056 1.2E-06 25.8 2.2 14 20-33 2-15 (26)
61 smart00369 LRR_TYP Leucine-ric 94.1 0.056 1.2E-06 25.8 2.2 14 20-33 2-15 (26)
62 KOG2123 Uncharacterized conser 94.0 0.0053 1.2E-07 47.6 -2.5 72 1-75 46-124 (388)
63 KOG1909 Ran GTPase-activating 93.6 0.017 3.7E-07 46.0 -0.4 91 13-103 206-310 (382)
64 PRK15386 type III secretion pr 93.2 0.21 4.5E-06 41.2 5.3 47 1-54 57-104 (426)
65 KOG0473 Leucine-rich repeat pr 93.1 0.0022 4.7E-08 48.5 -5.8 86 15-102 37-122 (326)
66 PF13306 LRR_5: Leucine rich r 92.7 0.12 2.6E-06 34.7 2.9 62 14-77 6-67 (129)
67 KOG2982 Uncharacterized conser 92.5 0.048 1E-06 42.9 0.6 62 19-80 70-133 (418)
68 KOG3665 ZYG-1-like serine/thre 91.9 0.1 2.2E-06 46.0 2.0 57 19-77 147-204 (699)
69 PF13306 LRR_5: Leucine rich r 91.8 0.32 6.9E-06 32.6 4.0 70 7-78 22-91 (129)
70 PRK15386 type III secretion pr 91.0 0.41 8.9E-06 39.5 4.5 63 16-86 48-112 (426)
71 PF11770 GAPT: GRB2-binding ad 91.0 0.15 3.2E-06 35.5 1.7 11 171-181 43-53 (158)
72 PF01102 Glycophorin_A: Glycop 90.2 0.24 5.2E-06 33.6 2.1 16 135-150 66-81 (122)
73 KOG1909 Ran GTPase-activating 89.7 0.19 4.2E-06 40.1 1.6 68 14-81 179-254 (382)
74 PF13516 LRR_6: Leucine Rich r 89.6 0.074 1.6E-06 24.9 -0.5 12 45-56 3-14 (24)
75 smart00364 LRR_BAC Leucine-ric 89.4 0.26 5.7E-06 23.8 1.3 17 45-62 3-19 (26)
76 PF15050 SCIMP: SCIMP protein 88.6 0.26 5.6E-06 33.0 1.4 24 135-158 9-32 (133)
77 smart00365 LRR_SD22 Leucine-ri 88.3 0.48 1E-05 22.9 1.9 14 44-57 2-15 (26)
78 COG5238 RNA1 Ran GTPase-activa 88.2 0.53 1.2E-05 36.8 3.0 41 41-81 89-133 (388)
79 PTZ00046 rifin; Provisional 87.6 0.32 7E-06 39.0 1.6 7 154-160 335-341 (358)
80 PF01102 Glycophorin_A: Glycop 87.4 0.33 7.2E-06 32.9 1.3 23 136-158 63-85 (122)
81 TIGR01477 RIFIN variant surfac 87.3 0.35 7.5E-06 38.8 1.6 8 153-160 329-336 (353)
82 PF04478 Mid2: Mid2 like cell 84.6 0.4 8.8E-06 33.7 0.7 22 136-157 52-73 (154)
83 PF15176 LRR19-TM: Leucine-ric 83.4 0.77 1.7E-05 29.8 1.5 19 136-154 17-35 (102)
84 smart00368 LRR_RI Leucine rich 82.5 1.3 2.7E-05 21.6 1.8 14 44-57 2-15 (28)
85 PF15102 TMEM154: TMEM154 prot 79.7 0.75 1.6E-05 32.1 0.6 7 161-167 83-89 (146)
86 TIGR00864 PCC polycystin catio 79.2 1.8 3.9E-05 43.5 3.0 32 26-57 1-32 (2740)
87 PF01299 Lamp: Lysosome-associ 79.0 1.7 3.7E-05 34.4 2.5 19 135-153 272-290 (306)
88 PF01034 Syndecan: Syndecan do 77.8 0.72 1.6E-05 27.4 0.0 15 138-152 14-28 (64)
89 COG5238 RNA1 Ran GTPase-activa 77.2 4.8 0.00011 31.6 4.3 65 15-80 87-169 (388)
90 KOG2120 SCF ubiquitin ligase, 76.7 0.29 6.3E-06 38.7 -2.4 57 21-77 186-243 (419)
91 TIGR00864 PCC polycystin catio 74.8 1.9 4.2E-05 43.3 2.0 32 2-33 1-32 (2740)
92 PF05454 DAG1: Dystroglycan (D 74.7 0.97 2.1E-05 35.4 0.0 28 141-168 152-179 (290)
93 PF07204 Orthoreo_P10: Orthore 74.5 2.6 5.7E-05 27.0 1.9 29 134-164 41-69 (98)
94 PF04478 Mid2: Mid2 like cell 74.0 1.1 2.4E-05 31.5 0.2 26 135-160 47-72 (154)
95 PF13908 Shisa: Wnt and FGF in 69.9 1.9 4.1E-05 31.2 0.6 8 138-145 80-87 (179)
96 PF05568 ASFV_J13L: African sw 68.1 4.8 0.0001 28.0 2.2 21 140-160 36-56 (189)
97 PHA03099 epidermal growth fact 67.4 9.4 0.0002 26.1 3.4 8 103-110 67-74 (139)
98 KOG3763 mRNA export factor TAP 67.4 4.1 8.8E-05 34.8 2.1 61 42-103 216-282 (585)
99 PF05393 Hum_adeno_E3A: Human 66.7 4.7 0.0001 25.5 1.8 18 141-158 38-55 (94)
100 PF11980 DUF3481: Domain of un 66.2 5 0.00011 25.1 1.8 33 135-167 16-49 (87)
101 PF15179 Myc_target_1: Myc tar 65.6 7.7 0.00017 28.2 2.9 7 143-149 30-36 (197)
102 PRK11677 hypothetical protein; 63.5 6.5 0.00014 27.2 2.2 20 135-154 3-22 (134)
103 KOG2120 SCF ubiquitin ligase, 63.1 3.7 7.9E-05 32.7 1.0 60 20-79 286-349 (419)
104 PHA03164 hypothetical protein; 61.6 6.7 0.00015 24.1 1.7 21 137-157 61-81 (88)
105 PF15069 FAM163: FAM163 family 60.9 2.9 6.2E-05 29.1 0.1 23 138-160 7-29 (143)
106 PF06667 PspB: Phage shock pro 60.3 7.8 0.00017 23.9 1.9 21 144-164 11-31 (75)
107 KOG3763 mRNA export factor TAP 58.7 5.4 0.00012 34.1 1.3 12 46-57 272-283 (585)
108 COG3105 Uncharacterized protei 57.5 10 0.00022 25.9 2.2 21 134-158 7-27 (138)
109 PF15050 SCIMP: SCIMP protein 57.0 6.8 0.00015 26.4 1.3 34 137-171 8-41 (133)
110 PF04971 Lysis_S: Lysis protei 56.9 11 0.00023 22.8 2.0 16 139-154 35-50 (68)
111 PF07213 DAP10: DAP10 membrane 55.4 25 0.00054 21.9 3.5 8 138-145 35-42 (79)
112 PF01299 Lamp: Lysosome-associ 54.6 11 0.00024 29.8 2.4 22 136-157 270-291 (306)
113 PF06365 CD34_antigen: CD34/Po 54.5 6.6 0.00014 29.1 1.1 15 155-169 122-136 (202)
114 PF14654 Epiglycanin_C: Mucin, 49.5 17 0.00038 23.5 2.2 27 134-160 17-44 (106)
115 TIGR02976 phageshock_pspB phag 47.3 16 0.00035 22.5 1.8 18 147-164 14-31 (75)
116 PF02009 Rifin_STEVOR: Rifin/s 46.6 15 0.00034 29.0 2.1 20 139-158 258-277 (299)
117 PF15065 NCU-G1: Lysosomal tra 45.8 18 0.0004 29.3 2.4 26 135-160 320-345 (350)
118 PHA03265 envelope glycoprotein 45.5 8.5 0.00018 31.0 0.5 22 136-157 350-371 (402)
119 PF14610 DUF4448: Protein of u 43.9 8.1 0.00018 28.2 0.1 24 135-158 157-180 (189)
120 PRK09458 pspB phage shock prot 42.6 28 0.0006 21.5 2.3 20 146-165 13-32 (75)
121 PF06040 Adeno_E3: Adenovirus 40.5 21 0.00045 23.9 1.6 9 155-163 116-124 (127)
122 PF06295 DUF1043: Protein of u 39.2 26 0.00057 23.9 2.1 16 138-153 2-17 (128)
123 PF11770 GAPT: GRB2-binding ad 38.2 13 0.00028 26.2 0.4 25 138-162 12-36 (158)
124 KOG3637 Vitronectin receptor, 38.1 21 0.00045 33.4 1.8 26 133-158 976-1001(1030)
125 PF13807 GNVR: G-rich domain o 37.3 74 0.0016 19.6 3.8 19 136-154 60-78 (82)
126 PF13120 DUF3974: Domain of un 36.9 47 0.001 21.5 2.8 17 146-162 15-31 (126)
127 PF01788 PsbJ: PsbJ; InterPro 36.3 48 0.001 17.7 2.3 21 137-157 10-30 (40)
128 PRK01844 hypothetical protein; 36.2 39 0.00084 20.6 2.2 14 144-157 12-25 (72)
129 PF03302 VSP: Giardia variant- 36.2 14 0.00031 30.4 0.5 20 138-157 370-389 (397)
130 COG3763 Uncharacterized protei 36.2 39 0.00085 20.5 2.2 18 140-157 8-25 (71)
131 PF11174 DUF2970: Protein of u 36.0 33 0.00071 19.8 1.8 19 135-153 31-49 (56)
132 PHA03291 envelope glycoprotein 35.5 18 0.0004 29.2 0.9 24 136-159 287-310 (401)
133 PF10577 UPF0560: Uncharacteri 35.4 40 0.00087 30.4 3.0 10 155-164 294-303 (807)
134 PF12877 DUF3827: Domain of un 35.1 22 0.00047 31.2 1.3 9 134-142 269-277 (684)
135 PF07010 Endomucin: Endomucin; 34.2 38 0.00081 25.7 2.3 14 147-160 203-216 (259)
136 PF07423 DUF1510: Protein of u 33.7 32 0.00069 25.9 1.9 9 136-144 16-24 (217)
137 PTZ00208 65 kDa invariant surf 32.8 34 0.00074 28.2 2.1 14 137-150 387-400 (436)
138 PF12606 RELT: Tumour necrosis 32.8 29 0.00064 19.6 1.2 6 153-158 17-22 (50)
139 PRK00523 hypothetical protein; 31.9 45 0.00098 20.3 2.0 12 145-156 14-25 (72)
140 PF12732 YtxH: YtxH-like prote 31.7 43 0.00094 20.2 2.0 19 139-157 2-20 (74)
141 TIGR01477 RIFIN variant surfac 30.5 47 0.001 26.9 2.5 10 174-183 334-343 (353)
142 PTZ00046 rifin; Provisional 30.5 47 0.001 27.0 2.5 10 174-183 339-348 (358)
143 KOG3864 Uncharacterized conser 30.2 6.8 0.00015 29.3 -2.1 31 22-52 103-133 (221)
144 PF05624 LSR: Lipolysis stimul 30.1 37 0.0008 18.7 1.3 17 138-154 5-21 (49)
145 smart00367 LRR_CC Leucine-rich 30.0 33 0.00072 15.9 1.0 11 44-54 2-12 (26)
146 PF10661 EssA: WXG100 protein 29.7 45 0.00097 23.4 2.0 11 140-150 122-132 (145)
147 PHA03286 envelope glycoprotein 29.0 60 0.0013 27.3 2.9 56 115-185 371-426 (492)
148 KOG4482 Sarcoglycan complex, a 27.9 91 0.002 25.6 3.6 22 142-163 305-326 (449)
149 PF04277 OAD_gamma: Oxaloaceta 27.9 57 0.0012 19.9 2.1 19 137-155 7-25 (79)
150 PF04418 DUF543: Domain of unk 27.9 74 0.0016 19.6 2.5 23 137-159 28-50 (75)
151 PF05545 FixQ: Cbb3-type cytoc 27.5 75 0.0016 17.5 2.3 7 151-157 22-28 (49)
152 PRK10132 hypothetical protein; 27.3 64 0.0014 21.4 2.3 17 134-150 86-102 (108)
153 PF12768 Rax2: Cortical protei 26.7 39 0.00084 26.5 1.4 18 138-155 232-249 (281)
154 KOG4056 Translocase of outer m 26.4 34 0.00074 23.8 0.9 15 144-158 15-29 (143)
155 PF08138 Sex_peptide: Sex pept 25.8 31 0.00068 19.6 0.6 26 155-180 16-41 (56)
156 PRK10692 hypothetical protein; 25.6 42 0.00091 21.3 1.1 8 161-168 72-79 (92)
157 PRK10404 hypothetical protein; 25.4 63 0.0014 21.1 2.0 17 134-150 80-96 (101)
158 PF03672 UPF0154: Uncharacteri 25.1 52 0.0011 19.6 1.4 12 145-156 6-17 (64)
159 PF12301 CD99L2: CD99 antigen 24.4 66 0.0014 23.2 2.1 9 159-167 139-147 (169)
160 smart00082 LRRCT Leucine rich 23.9 42 0.00092 18.1 0.9 9 101-109 1-9 (51)
161 PF06697 DUF1191: Protein of u 23.6 36 0.00077 26.7 0.7 8 138-145 215-222 (278)
162 TIGR00383 corA magnesium Mg(2+ 23.5 48 0.001 26.1 1.5 6 158-163 312-317 (318)
163 KOG4308 LRR-containing protein 23.4 6.3 0.00014 33.4 -3.7 60 22-81 235-303 (478)
164 PF11446 DUF2897: Protein of u 23.4 89 0.0019 18.0 2.1 8 144-151 13-20 (55)
165 PRK10591 hypothetical protein; 22.8 82 0.0018 20.2 2.1 22 154-175 62-83 (92)
166 COG0598 CorA Mg2+ and Co2+ tra 22.3 56 0.0012 26.0 1.6 9 155-163 313-321 (322)
167 PF05957 DUF883: Bacterial pro 22.2 81 0.0018 20.0 2.1 17 134-150 73-89 (94)
168 PF04995 CcmD: Heme exporter p 21.2 36 0.00079 18.6 0.2 13 143-155 12-24 (46)
169 COG4575 ElaB Uncharacterized c 21.1 81 0.0018 20.8 1.9 18 134-151 83-100 (104)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=157.88 Aligned_cols=114 Identities=40% Similarity=0.660 Sum_probs=103.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|++++|++
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc--ccccccccccCCCCCCCCCCCCCCC
Q 039243 81 RGAIPQGTQ--FSTFANDWFAGNPGLCGEPLSGKCG 114 (185)
Q Consensus 81 ~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~C~ 114 (185)
+|.+|.... ...+..+.+.+|+.+|+.+....|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred cccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999997642 2345567899999999987666674
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=7.6e-18 Score=150.22 Aligned_cols=108 Identities=42% Similarity=0.720 Sum_probs=87.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++.+.+|+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 46777777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
.|.+|....+..+....+.||+.+|+.+
T Consensus 584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 584 HGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eeeCCCcchhcccChhhhcCCccccCCc
Confidence 8888877777777777788888888753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=6.6e-15 Score=131.52 Aligned_cols=108 Identities=37% Similarity=0.541 Sum_probs=99.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|++++..|..+.++++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
.+.+|... .+..+..+.+.+|+..+..|
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99998754 56778888999998876554
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=2.2e-12 Score=110.38 Aligned_cols=88 Identities=35% Similarity=0.568 Sum_probs=79.4
Q ss_pred ccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC-ccccccccccc
Q 039243 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT-QFSTFANDWFA 99 (185)
Q Consensus 21 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~~~~l~~~~~~ 99 (185)
.++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|++++|+++|.+|... .+.++..+.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999754 67788889999
Q ss_pred CCCCCCCCC
Q 039243 100 GNPGLCGEP 108 (185)
Q Consensus 100 ~n~~~c~~~ 108 (185)
+|...+..|
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 987665443
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=8.3e-12 Score=98.60 Aligned_cols=102 Identities=22% Similarity=0.235 Sum_probs=90.0
Q ss_pred CCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCC
Q 039243 8 FVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQ 86 (185)
Q Consensus 8 l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 86 (185)
..++.|. .|..|++|+.|+|++|+|+..-+++|.++..+++|.|..|+|.......|.++..|+.|+|.+|+++..-|.
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 4444453 689999999999999999999999999999999999999999977788899999999999999999988887
Q ss_pred CC-cccccccccccCCCCCCCCCC
Q 039243 87 GT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 87 ~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
.+ ....+..+.+.+||+.|+|..
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred cccccceeeeeehccCcccCccch
Confidence 66 356678888999999998854
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.19 E-value=8.1e-12 Score=74.89 Aligned_cols=61 Identities=43% Similarity=0.655 Sum_probs=53.9
Q ss_pred cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
++|+.|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999977778899999999999999999977778899999999999999875
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-12 Score=91.04 Aligned_cols=101 Identities=28% Similarity=0.492 Sum_probs=77.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|-||+|.++ .+|+.+..+.+|+.|++++|+|+ .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||++.|++
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 347889888 55666788999999999999998 88888899999999999999998 7888888888899999888877
Q ss_pred cC-CCCCCC-cccccccccccCCCCC
Q 039243 81 RG-AIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~-~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
.. ..|..+ .+..+..++++.|.+.
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcc
Confidence 52 445433 2344555555555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.11 E-value=1e-11 Score=102.41 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=63.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCC---------------------
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--------------------- 59 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--------------------- 59 (185)
|||+.|+++...+++|..|..|++|+|++|+|+......|..+.+|+.|||++|.|++.
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 46677777766666666666666666666665544444555555555555555544433
Q ss_pred ------CchHhhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCCCCCCCCC
Q 039243 60 ------IPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 60 ------~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 109 (185)
...+|.++..|++|||.+|.+....|+.+.-..+..+.+....++|+|..
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 23345555566666666666655555554433555556666668888854
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=1.1e-11 Score=102.27 Aligned_cols=102 Identities=23% Similarity=0.232 Sum_probs=72.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+||.|.|..+-++.+.-.++|++|+|++|+|+...+++|..|..|+.|+|++|+++....++|.++++|+.|||++|.+
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 56777777777777777777777777777777766667777777777777777777766666777778888888888887
Q ss_pred cCCCCCCC----cccccccccccCCC
Q 039243 81 RGAIPQGT----QFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~----~~~~l~~~~~~~n~ 102 (185)
+..+.+.. .++++..+.+.||.
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred EEEEecchhhhccchhhhheeecCce
Confidence 76665532 34555666666664
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-11 Score=87.23 Aligned_cols=102 Identities=27% Similarity=0.380 Sum_probs=82.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|+++ .+|..++.++.|+.|+++-|++. .+|..|+.++.|+.||+..|++.. .+|+.|..+..|+.|.+++|.
T Consensus 61 ln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 61 LNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 457788887 67888889999999999999998 889999999999999999988863 478888888888888888888
Q ss_pred CcCCCCCCCcccccccccccCCCCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
+.-..|+..++.+++.+.+..|..+
T Consensus 139 fe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 139 FEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred cccCChhhhhhcceeEEeeccCchh
Confidence 8866666667777777766666544
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1e-10 Score=70.05 Aligned_cols=56 Identities=43% Similarity=0.554 Sum_probs=52.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKL 56 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 56 (185)
|++++|+++...++.|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred EECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999988888999999999999999999988889999999999999999986
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=6.2e-11 Score=94.08 Aligned_cols=97 Identities=25% Similarity=0.350 Sum_probs=76.0
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccc-cCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
+|..|.+. .+| +|+++..|..++++.|+|. .+|... ..+.++..||+..|+++ ..|+.++.+.+|..+|+++|.+
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence 45556555 344 5666666667777777776 555544 47899999999999999 8999999999999999999999
Q ss_pred cCCCCCCCcccccccccccCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
++..+....+ ++..+.+.|||.
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccCCcccccc-eeeehhhcCCch
Confidence 9777766666 788888999984
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.9e-10 Score=80.99 Aligned_cols=97 Identities=26% Similarity=0.403 Sum_probs=38.7
Q ss_pred CEecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHh-hcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL-AELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~l~l~~N 78 (185)
|+|.+|.|+.+ +.++ .+.+|+.|+|++|.|+ .++ .+..++.|+.|++++|+|+ .+++.+ ..+++|+.|++++|
T Consensus 24 L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 24 LNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCC
Confidence 57889998864 2455 5789999999999999 454 4788999999999999999 555545 46899999999999
Q ss_pred cCcCCCCCC---CcccccccccccCCCC
Q 039243 79 HLRGAIPQG---TQFSTFANDWFAGNPG 103 (185)
Q Consensus 79 ~l~~~~p~~---~~~~~l~~~~~~~n~~ 103 (185)
++.. +.+. ..++++..+++.|||.
T Consensus 99 ~I~~-l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 99 KISD-LNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---S-CCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCC-hHHhHHHHcCCCcceeeccCCcc
Confidence 9974 3222 2467788888999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=2.7e-11 Score=95.76 Aligned_cols=109 Identities=27% Similarity=0.306 Sum_probs=82.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
++|..|+|+.+.|++|+.+++|+.|||++|.|+.+-|++|.++++|..|-+-+ |+|+....+.|.++.+|+.|.+.-|+
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 46889999999999999999999999999999999999999999987776655 99996666677777666666666666
Q ss_pred CcCCCCCC------------------------C-cccccccccccCCCCCCCCCC
Q 039243 80 LRGAIPQG------------------------T-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 80 l~~~~p~~------------------------~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
+.+...+. + .+..+..+-...||+.|+|..
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 55333221 1 233445556778999988855
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=5.8e-10 Score=96.16 Aligned_cols=100 Identities=31% Similarity=0.417 Sum_probs=58.9
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+.......+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 44455444333333444555555555555555 44444455555555555555555 455 5666788899999998886
Q ss_pred C-CCCCCCcccccccccccCCCCC
Q 039243 82 G-AIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 82 ~-~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
. .+|.....+++..+++.||++.
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCccc
Confidence 3 3344444477888899999864
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=1.2e-09 Score=86.86 Aligned_cols=98 Identities=28% Similarity=0.429 Sum_probs=78.1
Q ss_pred CCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchH---------------------
Q 039243 5 DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ--------------------- 63 (185)
Q Consensus 5 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--------------------- 63 (185)
.|+..+.+|..+..+++|..|+|++|.+. .+|..++.+..|+.|+++.|++. .+|..
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence 34445578888899999999999999998 88999999999999999988776 45532
Q ss_pred ---hhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCCCC
Q 039243 64 ---LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 64 ---~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
+.++.+|..||+.+|.+...+|....+.++..+.+.|||+-
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 55567788888888888866666667788888888888864
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.72 E-value=2.8e-09 Score=89.28 Aligned_cols=90 Identities=38% Similarity=0.495 Sum_probs=50.0
Q ss_pred CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchH-hhcCCCCcEEEecCCcCcCCCCCCCcc
Q 039243 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ-LAELTSLAFFDVSHNHLRGAIPQGTQF 90 (185)
Q Consensus 12 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~p~~~~~ 90 (185)
+|..+..+..|+.||||+|+++ ..|..+..-+++-.|+||+|+|. .+|.. |-++..|-.||||+|.+...+|....+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 4444445555666666666665 55555555555666666666665 34433 335555666666666666555544444
Q ss_pred cccccccccCCCC
Q 039243 91 STFANDWFAGNPG 103 (185)
Q Consensus 91 ~~l~~~~~~~n~~ 103 (185)
..+..+.+++||.
T Consensus 173 ~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPL 185 (1255)
T ss_pred hhhhhhhcCCChh
Confidence 4555555555553
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.5e-08 Score=73.28 Aligned_cols=78 Identities=29% Similarity=0.366 Sum_probs=38.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccc-cCCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N 78 (185)
|+|++|.++... .+..++.|+.|++++|.|+ .++..+ ..+++|++|++++|+|... .-..+..+++|+.|++.+|
T Consensus 47 L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 47 LDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred EECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 589999999653 4778999999999999999 554444 4689999999999999742 1245678999999999999
Q ss_pred cCc
Q 039243 79 HLR 81 (185)
Q Consensus 79 ~l~ 81 (185)
++.
T Consensus 124 Pv~ 126 (175)
T PF14580_consen 124 PVC 126 (175)
T ss_dssp GGG
T ss_pred ccc
Confidence 987
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-09 Score=91.46 Aligned_cols=100 Identities=28% Similarity=0.388 Sum_probs=88.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|.+.+|.++...-+.+.+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|.++..++.|+.|...+|.+
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence 356789999888888999999999999999999555566899999999999999999 8999999999999999999999
Q ss_pred cCCCCCCCcccccccccccCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
. ..|+..++..+..++++.|.
T Consensus 443 ~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 443 L-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred e-echhhhhcCcceEEecccch
Confidence 8 67787788888888888775
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=8.9e-09 Score=79.48 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=48.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
||||+|.|+ .+.++..-++.++.|++|.|.|. .+.. +..|++|+.|||++|.++ .+-+.-..+.+.+.|.++.|.+
T Consensus 289 lDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 289 LDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 467777766 45555666677777777777776 3322 666777777777777776 4445444555555555555544
Q ss_pred c
Q 039243 81 R 81 (185)
Q Consensus 81 ~ 81 (185)
.
T Consensus 365 E 365 (490)
T KOG1259|consen 365 E 365 (490)
T ss_pred h
Confidence 3
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.59 E-value=6.9e-09 Score=86.99 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=87.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+||.|+++ .+|+++..|+.|+.|.+.+|+++ .-+|+.++.|.+|+.+..++|.+. ..|..++.+..|+.|.|+.|.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence 567788877 67888888888888888888875 247888888889999999999988 889999999999999999999
Q ss_pred CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
+- .+|+.+ .+..+..+++..||.+..+|.
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 87 567665 467788889999998876543
No 22
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=2.5e-08 Score=68.66 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=53.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+....+..-..++.++.|+|++|+|+ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 45666666433332234456777777777777 66766777777777777777777 66676666767777777777665
Q ss_pred CCCCC
Q 039243 82 GAIPQ 86 (185)
Q Consensus 82 ~~~p~ 86 (185)
.+|.
T Consensus 137 -eid~ 140 (177)
T KOG4579|consen 137 -EIDV 140 (177)
T ss_pred -cCcH
Confidence 4443
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.43 E-value=2e-07 Score=51.86 Aligned_cols=36 Identities=44% Similarity=0.695 Sum_probs=17.5
Q ss_pred ccceeecccccccCCCcccccCCCCCCEEeCCCCcCC
Q 039243 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57 (185)
Q Consensus 21 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 57 (185)
+|++|++++|+|+ .+|..+..|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3555555555555 34444555555555555555554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=3.2e-08 Score=81.84 Aligned_cols=97 Identities=26% Similarity=0.448 Sum_probs=59.8
Q ss_pred ecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcC
Q 039243 3 LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG 82 (185)
Q Consensus 3 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 82 (185)
+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++ |..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence 4445444 45556666666666666666666 56666666666666666666665 4555555443 777777777777
Q ss_pred CCCCC-CcccccccccccCCCCC
Q 039243 83 AIPQG-TQFSTFANDWFAGNPGL 104 (185)
Q Consensus 83 ~~p~~-~~~~~l~~~~~~~n~~~ 104 (185)
.+|.. ..+..+..+.++.||..
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 44443 35666677777777743
No 25
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=4.1e-08 Score=83.42 Aligned_cols=102 Identities=29% Similarity=0.351 Sum_probs=65.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++...- .+..++.|+.|||++|.++ .+|.--..--.|+.|.+++|.++ .+ ..+.++.+|..||++.|-+
T Consensus 192 LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 192 LNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccchhHhhh
Confidence 567777776442 5666777777777777777 44432222223777777777776 22 2367788888999998877
Q ss_pred cCCCCC--CCcccccccccccCCCCCCCC
Q 039243 81 RGAIPQ--GTQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 81 ~~~~p~--~~~~~~l~~~~~~~n~~~c~~ 107 (185)
.+--.- ...+..+..+++.|||..|..
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 642111 123455677889999988843
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=8.7e-07 Score=49.22 Aligned_cols=37 Identities=35% Similarity=0.642 Sum_probs=32.6
Q ss_pred CCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 44 TVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 44 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
++|++|++++|+|+ .+|..+.++++|+.+++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 78888999999999999999988
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=7e-07 Score=77.97 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=39.0
Q ss_pred cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-Ccccccccccc
Q 039243 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWF 98 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~ 98 (185)
.+|+.|++++|.|+ .+|... .+|+.|++++|+|+ .+|... .+|+.|++++|+++ .+|.. ..+..+..+.+
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 35666667766666 344322 35566666666665 344322 23455555555555 33432 23444555555
Q ss_pred cCCCCC
Q 039243 99 AGNPGL 104 (185)
Q Consensus 99 ~~n~~~ 104 (185)
++|+..
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 555543
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=2.8e-06 Score=77.90 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=65.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|.+|++. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+++++..
T Consensus 616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 355666655 3555566777777777776654335553 66777788888877654447777788888888888887543
Q ss_pred cCCCCCCCcccccccccccCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
-+.+|....+.++..+.+.++.
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCCC
Confidence 3456655555666666665553
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=2.1e-07 Score=72.04 Aligned_cols=66 Identities=32% Similarity=0.396 Sum_probs=56.9
Q ss_pred hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcC
Q 039243 14 TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG 82 (185)
Q Consensus 14 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 82 (185)
.....++.|+.+|||+|.|+ .+..+..-++.++.|++++|.|. .+ +.++.+++|++||+++|.++.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHh
Confidence 34455678999999999999 88888889999999999999998 44 348899999999999998863
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.24 E-value=2.9e-06 Score=74.14 Aligned_cols=72 Identities=32% Similarity=0.606 Sum_probs=33.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|+++. +|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|++
T Consensus 204 L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 204 LILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred EEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence 3556666663 343332 35566666666655 3443332 23444444444444 3343332 2344444444444
Q ss_pred c
Q 039243 81 R 81 (185)
Q Consensus 81 ~ 81 (185)
+
T Consensus 275 ~ 275 (754)
T PRK15370 275 S 275 (754)
T ss_pred C
Confidence 4
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.22 E-value=8.3e-07 Score=77.50 Aligned_cols=72 Identities=31% Similarity=0.578 Sum_probs=43.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.++. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|+|+ .+|..+. ++|+.|++++|.+
T Consensus 309 L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 309 LNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred HHhcCCcccc-CCcccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence 3566777764 343332 56677777777776 3554443 56777777777766 4565442 4666677776666
Q ss_pred c
Q 039243 81 R 81 (185)
Q Consensus 81 ~ 81 (185)
+
T Consensus 380 t 380 (754)
T PRK15370 380 T 380 (754)
T ss_pred C
Confidence 6
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=7.8e-08 Score=66.24 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=71.3
Q ss_pred CEecCCcCCCCCch---hccCCcccceeecccccccCCCcccccCC-CCCCEEeCCCCcCCCCCchHhhcCCCCcEEEec
Q 039243 1 IILLDNNFVGEIPT---SIASLKGLQTLNLSNNNLRGYIPLTLSNL-TVIESLDLSSNKLTGQIPQQLAELTSLAFFDVS 76 (185)
Q Consensus 1 L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~ 76 (185)
+||+++.+- .+++ .+.....|...+|++|.+. ..|..|... +.++.+++++|.|+ .+|..+..++.|+.++++
T Consensus 32 ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 32 LDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred cccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence 356666554 2333 3445567888899999999 666666554 58999999999999 899999999999999999
Q ss_pred CCcCcCCCCCCCcccccccccccCC
Q 039243 77 HNHLRGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 77 ~N~l~~~~p~~~~~~~l~~~~~~~n 101 (185)
.|++...+.....+.++..++..+|
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCC
Confidence 9999844433344555554444444
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=5.6e-06 Score=75.94 Aligned_cols=98 Identities=24% Similarity=0.384 Sum_probs=62.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCC---------------------CCCEEeCCCCcCCCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT---------------------VIESLDLSSNKLTGQ 59 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------~L~~L~l~~N~l~~~ 59 (185)
|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ .++ +|+.|++++|.++ .
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-E 860 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-c
Confidence 4677787777889889999999999998865333555443 333 4555666666666 5
Q ss_pred CchHhhcCCCCcEEEecC-CcCcCCCCCCCcccccccccccC
Q 039243 60 IPQQLAELTSLAFFDVSH-NHLRGAIPQGTQFSTFANDWFAG 100 (185)
Q Consensus 60 ~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~~~~~l~~~~~~~ 100 (185)
+|..+..+++|+.|++++ |.+.+..+....+..+..+.+.+
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 677777777888888876 45554333333344444444433
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.20 E-value=1.7e-06 Score=75.68 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=17.3
Q ss_pred CCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 45 VIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 45 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|+.|++++|+|+ .+|.. .++|+.|++++|.++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT 415 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC
Confidence 3555555555555 23332 234566666666665
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=1.2e-06 Score=71.30 Aligned_cols=96 Identities=34% Similarity=0.523 Sum_probs=61.6
Q ss_pred EecCCcCCCCCchhccCCc-ccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 2 ILLDNNFVGEIPTSIASLK-GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
++.+|+++. +|.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|+++ .+|......+.|..+++++|.+
T Consensus 122 ~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 122 DLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred ecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence 455666663 444444553 7778888888877 66666777777888888888877 5666555667777777777777
Q ss_pred cCCCCCCC-cccccccccccCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n 101 (185)
+ .+|... ....+..+.+.+|
T Consensus 199 ~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 199 S-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred c-cCchhhhhhhhhhhhhhcCC
Confidence 7 444432 2233455555555
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.05 E-value=4.6e-07 Score=75.19 Aligned_cols=76 Identities=38% Similarity=0.572 Sum_probs=42.1
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
||+.|.+. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.++||+.|+++ .+|..++.++ |+.+-+++|++.
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence 45555555 45555555555555555555555 55555555555555555555555 4555555544 555555555554
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.98 E-value=1.2e-06 Score=68.82 Aligned_cols=80 Identities=29% Similarity=0.360 Sum_probs=40.3
Q ss_pred EecCCcCCCCCchhccCCcc---cceeecccccccC----CCcccccCC-CCCCEEeCCCCcCCCC----CchHhhcCCC
Q 039243 2 ILLDNNFVGEIPTSIASLKG---LQTLNLSNNNLRG----YIPLTLSNL-TVIESLDLSSNKLTGQ----IPQQLAELTS 69 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~~~l~~ 69 (185)
++++|.+.+..+..+..+.. |+.|++++|.++. .+...+..+ ++|+.|++++|.+++. ++..+..+.+
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 45555555444444444433 6666666665552 122233444 5566666666666532 1223344455
Q ss_pred CcEEEecCCcCc
Q 039243 70 LAFFDVSHNHLR 81 (185)
Q Consensus 70 L~~l~l~~N~l~ 81 (185)
|+.+++++|.++
T Consensus 167 L~~L~l~~n~l~ 178 (319)
T cd00116 167 LKELNLANNGIG 178 (319)
T ss_pred cCEEECcCCCCc
Confidence 666666666554
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.97 E-value=1.9e-06 Score=67.75 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=61.6
Q ss_pred CEecCCcCCC----CCchhccCC-cccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243 1 IILLDNNFVG----EIPTSIASL-KGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL 67 (185)
Q Consensus 1 L~L~~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l 67 (185)
|++++|.++. .+...+..+ ++|+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ++..+...
T Consensus 113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence 4567777663 223344555 7788888888887742 333455667788888888887742 22334455
Q ss_pred CCCcEEEecCCcCcCCCCC-----CCcccccccccccCCC
Q 039243 68 TSLAFFDVSHNHLRGAIPQ-----GTQFSTFANDWFAGNP 102 (185)
Q Consensus 68 ~~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n~ 102 (185)
++|+.+++++|.+.+.... ....+++..+.+.+|+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 6788888888876532211 1123456666666654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=3.3e-06 Score=68.65 Aligned_cols=100 Identities=29% Similarity=0.458 Sum_probs=73.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+. .+|..+..++.|+.|++++|+++ .+|.....++.|+.|++++|+++ .+|........|+.+++++|.+
T Consensus 145 L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred ccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence 577888887 45566789999999999999999 77776668899999999999999 7888766666799999999953
Q ss_pred cCCCCCCCcccccccccccCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
...+.....+..+..+...+|..
T Consensus 222 ~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 222 IELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred eecchhhhhcccccccccCCcee
Confidence 32333333334444444444443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=6.5e-06 Score=73.19 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC
Q 039243 8 FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG 87 (185)
Q Consensus 8 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 87 (185)
+....++.|..++.|.+|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.++..|.+||+..+.-...+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 33344455788999999999988766699999999999999999999999 88999999999999999987654444443
Q ss_pred Cc-ccccccccc
Q 039243 88 TQ-FSTFANDWF 98 (185)
Q Consensus 88 ~~-~~~l~~~~~ 98 (185)
.. +.++..+.+
T Consensus 638 ~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 638 LLELQSLRVLRL 649 (889)
T ss_pred hhhcccccEEEe
Confidence 32 455554443
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=3.1e-05 Score=56.76 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=59.6
Q ss_pred CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCC--CCCCCcccccccc
Q 039243 19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA--IPQGTQFSTFAND 96 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~--~p~~~~~~~l~~~ 96 (185)
+.+...+||++|.+. .+ ..|..++.|.+|.+++|+|+...|.--.-+++|..|.+.+|++... +.....++.+..+
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 346778888888886 32 3467888889999999999876666555677788899998887632 2223345677777
Q ss_pred cccCCCC
Q 039243 97 WFAGNPG 103 (185)
Q Consensus 97 ~~~~n~~ 103 (185)
.+.|||-
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 7888873
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.5e-06 Score=74.15 Aligned_cols=93 Identities=26% Similarity=0.298 Sum_probs=60.8
Q ss_pred cCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCC
Q 039243 4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA 83 (185)
Q Consensus 4 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 83 (185)
+.|.+. ....++.-++.|+.|||++|+++.. . .+..++.|++|||+.|.++ .+|..-..-..|..|.+.+|.++ .
T Consensus 172 syN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-t 246 (1096)
T KOG1859|consen 172 SYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-T 246 (1096)
T ss_pred chhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-h
Confidence 344443 3445566677788888888888733 2 6778888888888888887 56653222224888888888776 3
Q ss_pred CCCCCcccccccccccCC
Q 039243 84 IPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 84 ~p~~~~~~~l~~~~~~~n 101 (185)
+-...++.++..++++.|
T Consensus 247 L~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred hhhHHhhhhhhccchhHh
Confidence 444445666666666655
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=2.3e-05 Score=69.75 Aligned_cols=78 Identities=29% Similarity=0.410 Sum_probs=69.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|||++|.=-+.+|..+++|-+|++|+|++..+. .+|..+.+|..|.+|++..+.-...+|+....+++|++|.+-...
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 689988878899999999999999999999999 999999999999999999887655668888889999999886543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=2.8e-05 Score=63.86 Aligned_cols=83 Identities=31% Similarity=0.385 Sum_probs=35.4
Q ss_pred cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCC-CCccccccc
Q 039243 17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQ-GTQFSTFAN 95 (185)
Q Consensus 17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~ 95 (185)
..+++|+.|++++|.|+...+ +..+..|+.|++++|.|+ .+.+ +..+..|+.+++++|.+....+. ...+..+..
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 344455555555555542222 223334555555555554 2211 22344455555555554422221 123344444
Q ss_pred ccccCCCC
Q 039243 96 DWFAGNPG 103 (185)
Q Consensus 96 ~~~~~n~~ 103 (185)
+.+.+|..
T Consensus 191 l~l~~n~i 198 (414)
T KOG0531|consen 191 LDLGGNSI 198 (414)
T ss_pred HhccCCch
Confidence 44555443
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=7.1e-05 Score=54.93 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=62.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc--hHhhcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP--QQLAELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~l~l~~N 78 (185)
+||++|.+-.. +.|..++.|.+|.|.+|+|+...|..-..+++|+.|.+.+|.|. .+- +-+..++.|+.|.+-+|
T Consensus 47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCC
Confidence 47788877532 35778899999999999999777777677888999999999987 332 23567889999999999
Q ss_pred cCc
Q 039243 79 HLR 81 (185)
Q Consensus 79 ~l~ 81 (185)
+..
T Consensus 124 pv~ 126 (233)
T KOG1644|consen 124 PVE 126 (233)
T ss_pred chh
Confidence 875
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=1.9e-05 Score=64.79 Aligned_cols=84 Identities=30% Similarity=0.310 Sum_probs=55.5
Q ss_pred hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccc
Q 039243 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFA 94 (185)
Q Consensus 15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~ 94 (185)
.+..+++|+.|++.+|.|. .+...+..+.+|++|++++|.|+... .+..++.|+.|++++|.++ .+.....+..+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhhh
Confidence 3566778888888888887 44443667788888888888887332 2455667888888888877 334333344555
Q ss_pred cccccCCC
Q 039243 95 NDWFAGNP 102 (185)
Q Consensus 95 ~~~~~~n~ 102 (185)
...+++|.
T Consensus 166 ~l~l~~n~ 173 (414)
T KOG0531|consen 166 LLDLSYNR 173 (414)
T ss_pred cccCCcch
Confidence 55555553
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00014 Score=58.91 Aligned_cols=80 Identities=30% Similarity=0.409 Sum_probs=48.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCc--ccccCCCCCCEEeCCCCcCCCC-CchH-----hhcCCCCcE
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP--LTLSNLTVIESLDLSSNKLTGQ-IPQQ-----LAELTSLAF 72 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~~L~~ 72 (185)
|+|+.|+..........-+..|+.|||++|++- ..+ ...+.++.|..|+++.+.+... .|+. ...+++|+.
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 345666433333333445677788888887776 333 3456677777777777776532 2222 234567888
Q ss_pred EEecCCcCc
Q 039243 73 FDVSHNHLR 81 (185)
Q Consensus 73 l~l~~N~l~ 81 (185)
|+++.|++.
T Consensus 306 L~i~~N~I~ 314 (505)
T KOG3207|consen 306 LNISENNIR 314 (505)
T ss_pred eecccCccc
Confidence 888888774
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.0017 Score=49.46 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=29.5
Q ss_pred CcccceeecccccccCCCcccccCCCCCCEEeCCCC--cCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN--KLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+..|+.|.+.+-.++.. ..|..|++|+.|.++.| ++++.++.....+++|+++++++|+++
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444444311 22445555555556555 444444444444455556666555554
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.0011 Score=50.36 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=52.1
Q ss_pred hccCCcccceeecccc--cccCCCcccccCCCCCCEEeCCCCcCCCCCchHh---hcCCCCcEEEecCCcCcC
Q 039243 15 SIASLKGLQTLNLSNN--NLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL---AELTSLAFFDVSHNHLRG 82 (185)
Q Consensus 15 ~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~l~l~~N~l~~ 82 (185)
.|..|++|+.|.++.| .+++.++.....+++|+++++++|+++ . ++++ ..+.+|..|++.++..+.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCccc
Confidence 3567889999999999 777777777777799999999999998 2 4443 455678889998887654
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.70 E-value=0.00069 Score=31.54 Aligned_cols=19 Identities=53% Similarity=0.725 Sum_probs=11.0
Q ss_pred cceeecccccccCCCccccc
Q 039243 22 LQTLNLSNNNLRGYIPLTLS 41 (185)
Q Consensus 22 L~~L~Ls~N~l~~~~p~~~~ 41 (185)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 5555444
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00032 Score=56.97 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=17.5
Q ss_pred cCCCCcEEEecCCc-CcCCCCCCCcccccccccccCCCCC
Q 039243 66 ELTSLAFFDVSHNH-LRGAIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 66 ~l~~L~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
.+++|..|++..|. +....-....++.+..+++++|+.+
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 34555566665553 1111111223444555556665544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.001 Score=51.84 Aligned_cols=80 Identities=29% Similarity=0.283 Sum_probs=48.0
Q ss_pred CEecCCcCCC--CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc-hHhhcCCCCcEEEecC
Q 039243 1 IILLDNNFVG--EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP-QQLAELTSLAFFDVSH 77 (185)
Q Consensus 1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~l~l~~ 77 (185)
|||.+|.|+. .+..-+.+++.|++|+|+.|++...+...-..+.+|+.|-|.+..+...-. ..+..+|.++.+.++.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 4566676652 223335577778888888887763332222355677777777766654322 2344666777777777
Q ss_pred CcC
Q 039243 78 NHL 80 (185)
Q Consensus 78 N~l 80 (185)
|++
T Consensus 156 N~~ 158 (418)
T KOG2982|consen 156 NSL 158 (418)
T ss_pred chh
Confidence 744
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.34 E-value=0.00082 Score=31.27 Aligned_cols=20 Identities=50% Similarity=0.733 Sum_probs=12.6
Q ss_pred CCCEEeCCCCcCCCCCchHhh
Q 039243 45 VIESLDLSSNKLTGQIPQQLA 65 (185)
Q Consensus 45 ~L~~L~l~~N~l~~~~p~~~~ 65 (185)
+|++||+++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566777777776 5665544
No 54
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.55 E-value=0.0002 Score=53.92 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=49.8
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
|++.|.+- -....|..++.|..||++.|.+. ..|..++++..+..+++-.|.++ ..|.++...+.++.+++..|.+.
T Consensus 48 d~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 48 DLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 44444433 22233455566667777777776 67777777777777777777776 66777777777777777776653
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.25 E-value=0.01 Score=25.67 Aligned_cols=9 Identities=67% Similarity=0.900 Sum_probs=3.0
Q ss_pred ceeeccccc
Q 039243 23 QTLNLSNNN 31 (185)
Q Consensus 23 ~~L~Ls~N~ 31 (185)
+.|+|++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0024 Score=49.49 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCch--HhhcCCCCcEEEecCCcCcC
Q 039243 18 SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ--QLAELTSLAFFDVSHNHLRG 82 (185)
Q Consensus 18 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~ 82 (185)
.++.|++|.||-|+|+..-| +..++.|++|+|..|.|. .+.+ -+.++++|+.|.|..|...|
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccc
Confidence 45666666666666663333 445566666666666665 2222 13355666666666665543
No 57
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.29 E-value=0.031 Score=26.78 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=7.7
Q ss_pred CCCCEEeCCCCcCC
Q 039243 44 TVIESLDLSSNKLT 57 (185)
Q Consensus 44 ~~L~~L~l~~N~l~ 57 (185)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.29 E-value=0.031 Score=26.78 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=7.7
Q ss_pred CCCCEEeCCCCcCC
Q 039243 44 TVIESLDLSSNKLT 57 (185)
Q Consensus 44 ~~L~~L~l~~N~l~ 57 (185)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.23 E-value=0.045 Score=48.07 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=33.1
Q ss_pred cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCC
Q 039243 17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N 78 (185)
.++++|..||+|+..++.. ..++.|++|+.|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 4567777777777776622 445566666666555544431 11123445566666666654
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.09 E-value=0.056 Score=25.85 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=8.3
Q ss_pred cccceeeccccccc
Q 039243 20 KGLQTLNLSNNNLR 33 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~ 33 (185)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.09 E-value=0.056 Score=25.85 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=8.3
Q ss_pred cccceeeccccccc
Q 039243 20 KGLQTLNLSNNNLR 33 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~ 33 (185)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.0053 Score=47.60 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=55.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcc--cccCCCCCCEEeCCCCcCCCCCch-----HhhcCCCCcEE
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL--TLSNLTVIESLDLSSNKLTGQIPQ-----QLAELTSLAFF 73 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~-----~~~~l~~L~~l 73 (185)
|.||-|.|+..-| |..++.|+.|+|..|.|. .+.. -+.++++|+.|+|..|.-.|.-+. .+.-+++|+.|
T Consensus 46 LsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 46 LSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred EEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 3577888886644 668899999999999998 4443 358899999999999998876654 35567888887
Q ss_pred Ee
Q 039243 74 DV 75 (185)
Q Consensus 74 ~l 75 (185)
|-
T Consensus 123 Dn 124 (388)
T KOG2123|consen 123 DN 124 (388)
T ss_pred cC
Confidence 63
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.57 E-value=0.017 Score=45.95 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=61.2
Q ss_pred chhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHh----h-cCCCCcEEEecCCcCcCC
Q 039243 13 PTSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQL----A-ELTSLAFFDVSHNHLRGA 83 (185)
Q Consensus 13 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~-~l~~L~~l~l~~N~l~~~ 83 (185)
...|..+++|++|||..|-++.. +...+..+++|+.+++++..+...-..++ . ..++|+.+.+.+|.++..
T Consensus 206 ~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 34567789999999999998732 34456778889999999888874333222 2 357889999999987521
Q ss_pred CCC-----CCcccccccccccCCCC
Q 039243 84 IPQ-----GTQFSTFANDWFAGNPG 103 (185)
Q Consensus 84 ~p~-----~~~~~~l~~~~~~~n~~ 103 (185)
--. ....+.+..+.+++|..
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCcccc
Confidence 100 01245566677888876
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.23 E-value=0.21 Score=41.19 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=24.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSN 54 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N 54 (185)
|++++|.++. +|. + ..+|+.|.+++ +.++ .+|+.+. .+|+.|+++++
T Consensus 57 L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 57 LYIKDCDIES-LPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred EEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 4677776663 341 2 24567777765 3443 5554332 35555555554
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.05 E-value=0.0022 Score=48.47 Aligned_cols=86 Identities=22% Similarity=0.193 Sum_probs=67.1
Q ss_pred hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccc
Q 039243 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFA 94 (185)
Q Consensus 15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~ 94 (185)
.+......+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..+..+..+.++++..|..+-.+-...+.+...
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3556678889999999998 77778888999999999999999 788888888888899999888873333333555555
Q ss_pred cccccCCC
Q 039243 95 NDWFAGNP 102 (185)
Q Consensus 95 ~~~~~~n~ 102 (185)
.....+|+
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55666665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.71 E-value=0.12 Score=34.71 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=30.1
Q ss_pred hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 14 TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 14 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
.+|.+..+|+.+.+.. .+.......|....+|+.+.+..+ +.......|..+.+++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 3455666677666664 455455555666666777776664 5434444566665666666654
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.048 Score=42.87 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=41.8
Q ss_pred CcccceeecccccccC--CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 19 LKGLQTLNLSNNNLRG--YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
.+.++.+||.+|.|+. .+-..+.+|+.|+.|+++.|.+...+...-....+|+.+-+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 4667888888888872 2334467888888999998888743322113455777777776655
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.94 E-value=0.1 Score=45.96 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=28.2
Q ss_pred CcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 19 LKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
||+|+.|.+++-.+... .-....++++|..||+|+.+++ .+ ..++.+++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence 45566655555444311 1223345556666666666555 22 3345555555554444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.76 E-value=0.32 Score=32.63 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=45.4
Q ss_pred cCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 7 NFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 7 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
.+...-...|..+++|+.+.+..+ +.......|....+|+.+.+.. .+.......|..+++|+.+++..+
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 344445567888889999999886 7656667788888999999976 444344556777899999999765
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.02 E-value=0.41 Score=39.49 Aligned_cols=63 Identities=17% Similarity=0.411 Sum_probs=44.7
Q ss_pred ccCCcccceeecccccccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCC-cCcCCCCC
Q 039243 16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHN-HLRGAIPQ 86 (185)
Q Consensus 16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N-~l~~~~p~ 86 (185)
+..+.+++.|++++|.|+ .+|. -..+|+.|.+++ +.++ .+|+.+. .+|+.|++++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence 344688999999999998 6672 224699999986 6666 6777553 47888888877 444 3443
No 71
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=90.96 E-value=0.15 Score=35.54 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.2
Q ss_pred cccccchhccc
Q 039243 171 QPESNGRRRRH 181 (185)
Q Consensus 171 ~~~~~~r~~~~ 181 (185)
-|+..+||+.+
T Consensus 43 LPkflqRRssk 53 (158)
T PF11770_consen 43 LPKFLQRRSSK 53 (158)
T ss_pred hHHHHHhhhhh
Confidence 34444555444
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=90.17 E-value=0.24 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=7.4
Q ss_pred hhhhHhHHHHHHhhhh
Q 039243 135 WKIVLAGYASGTIIGV 150 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (185)
...+++|++++++..+
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3444555555544433
No 73
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.66 E-value=0.19 Score=40.14 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=48.6
Q ss_pred hhccCCcccceeecccccccC----CCcccccCCCCCCEEeCCCCcCCCCC----chHhhcCCCCcEEEecCCcCc
Q 039243 14 TSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTGQI----PQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 14 ~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~ 81 (185)
..|...+.|+.+.++.|.|.. .+-..|..+++|+.|||..|-++..- ...+..+++|+.+++++..++
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 346667888899999988752 12345677889999999999887432 234556677888888887765
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.63 E-value=0.074 Score=24.91 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=4.2
Q ss_pred CCCEEeCCCCcC
Q 039243 45 VIESLDLSSNKL 56 (185)
Q Consensus 45 ~L~~L~l~~N~l 56 (185)
+|++|++++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.40 E-value=0.26 Score=23.79 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=8.8
Q ss_pred CCCEEeCCCCcCCCCCch
Q 039243 45 VIESLDLSSNKLTGQIPQ 62 (185)
Q Consensus 45 ~L~~L~l~~N~l~~~~p~ 62 (185)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555555555555 4443
No 76
>PF15050 SCIMP: SCIMP protein
Probab=88.61 E-value=0.26 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=11.3
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhhc
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
|.+++++++++-+++.++++++|+
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444443
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.28 E-value=0.48 Score=22.86 Aligned_cols=14 Identities=57% Similarity=0.759 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCcCC
Q 039243 44 TVIESLDLSSNKLT 57 (185)
Q Consensus 44 ~~L~~L~l~~N~l~ 57 (185)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666665
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.23 E-value=0.53 Score=36.77 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=27.1
Q ss_pred cCCCCCCEEeCCCCcCCCCCchHh----hcCCCCcEEEecCCcCc
Q 039243 41 SNLTVIESLDLSSNKLTGQIPQQL----AELTSLAFFDVSHNHLR 81 (185)
Q Consensus 41 ~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~l~l~~N~l~ 81 (185)
-.++.|+..+||.|.+....|..+ +.-+.|.+|.+++|.+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345777777777777765555543 34456777777777664
No 79
>PTZ00046 rifin; Provisional
Probab=87.58 E-value=0.32 Score=39.01 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=2.7
Q ss_pred hhhhccc
Q 039243 154 YIFCTRK 160 (185)
Q Consensus 154 ~~~~~~~ 160 (185)
+++++||
T Consensus 335 YLILRYR 341 (358)
T PTZ00046 335 YLILRYR 341 (358)
T ss_pred HHHHHhh
Confidence 3344333
No 80
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.39 E-value=0.33 Score=32.93 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=15.6
Q ss_pred hhhHhHHHHHHhhhhhhhhhhhc
Q 039243 136 KIVLAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
...++++++|++++++.++++..
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHH
Confidence 45677778888888777766543
No 81
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=87.31 E-value=0.35 Score=38.75 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.1
Q ss_pred hhhhhccc
Q 039243 153 GYIFCTRK 160 (185)
Q Consensus 153 ~~~~~~~~ 160 (185)
++++++||
T Consensus 329 IYLILRYR 336 (353)
T TIGR01477 329 IYLILRYR 336 (353)
T ss_pred HHHHHHhh
Confidence 33344433
No 82
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=84.62 E-value=0.4 Score=33.65 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=9.6
Q ss_pred hhhHhHHHHHHhhhhhhhhhhh
Q 039243 136 KIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..+++|+++++++++++++++|
T Consensus 52 IGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 52 IGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEecccHHHHHHHHHhheeE
Confidence 3344554444454433333333
No 83
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=83.38 E-value=0.77 Score=29.80 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=8.7
Q ss_pred hhhHhHHHHHHhhhhhhhh
Q 039243 136 KIVLAGYASGTIIGVVLGY 154 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (185)
+.+++|+++++++..++++
T Consensus 17 W~~LVGVv~~al~~SlLIa 35 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIA 35 (102)
T ss_pred cHhHHHHHHHHHHHHHHHH
Confidence 3445555554444444333
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.46 E-value=1.3 Score=21.59 Aligned_cols=14 Identities=50% Similarity=0.672 Sum_probs=9.2
Q ss_pred CCCCEEeCCCCcCC
Q 039243 44 TVIESLDLSSNKLT 57 (185)
Q Consensus 44 ~~L~~L~l~~N~l~ 57 (185)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777777665
No 85
>PF15102 TMEM154: TMEM154 protein family
Probab=79.70 E-value=0.75 Score=32.09 Aligned_cols=7 Identities=14% Similarity=-0.225 Sum_probs=3.1
Q ss_pred cceeehh
Q 039243 161 YEWLIKT 167 (185)
Q Consensus 161 ~~w~~~~ 167 (185)
|||+.|.
T Consensus 83 kRkr~K~ 89 (146)
T PF15102_consen 83 KRKRTKQ 89 (146)
T ss_pred eecccCC
Confidence 4444443
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.20 E-value=1.8 Score=43.52 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.5
Q ss_pred ecccccccCCCcccccCCCCCCEEeCCCCcCC
Q 039243 26 NLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57 (185)
Q Consensus 26 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 57 (185)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999777778888999999999999886
No 87
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=78.97 E-value=1.7 Score=34.35 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=8.6
Q ss_pred hhhhHhHHHHHHhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLG 153 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (185)
...+++|++++++++++++
T Consensus 272 ~vPIaVG~~La~lvlivLi 290 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLI 290 (306)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444433
No 88
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=77.79 E-value=0.72 Score=27.38 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=0.0
Q ss_pred hHhHHHHHHhhhhhh
Q 039243 138 VLAGYASGTIIGVVL 152 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (185)
+++++++++++.+++
T Consensus 14 vIaG~Vvgll~ailL 28 (64)
T PF01034_consen 14 VIAGGVVGLLFAILL 28 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 89
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.24 E-value=4.8 Score=31.64 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=42.1
Q ss_pred hccCCcccceeecccccccCCCcccc----cCCCCCCEEeCCCCcCCCCCchH-h-------------hcCCCCcEEEec
Q 039243 15 SIASLKGLQTLNLSNNNLRGYIPLTL----SNLTVIESLDLSSNKLTGQIPQQ-L-------------AELTSLAFFDVS 76 (185)
Q Consensus 15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~l~~N~l~~~~p~~-~-------------~~l~~L~~l~l~ 76 (185)
++-+++.|+..+||.|.+....|..+ +.-..|.+|.+++|.+. .+.+. + .+-|.|+.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 35567888888888888876666543 44567888888888765 22221 1 123456666666
Q ss_pred CCcC
Q 039243 77 HNHL 80 (185)
Q Consensus 77 ~N~l 80 (185)
.|.+
T Consensus 166 rNRl 169 (388)
T COG5238 166 RNRL 169 (388)
T ss_pred cchh
Confidence 6655
No 90
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=76.67 E-value=0.29 Score=38.66 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=33.3
Q ss_pred ccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 21 GLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 21 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
.||.|||++..|+.. +-..+.++.+|+.|.+.++++...+-..+++-..|+.+|++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 466777777666522 223345556666667777766655555555555566666654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.82 E-value=1.9 Score=43.27 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=29.9
Q ss_pred EecCCcCCCCCchhccCCcccceeeccccccc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLR 33 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 33 (185)
||++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999998999999999999999999886
No 92
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=74.68 E-value=0.97 Score=35.44 Aligned_cols=28 Identities=7% Similarity=-0.193 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhccccceeehhc
Q 039243 141 GYASGTIIGVVLGYIFCTRKYEWLIKTF 168 (185)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 168 (185)
+++++++++++++++++++||+..-|+.
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 3333333334444444445544444443
No 93
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=74.50 E-value=2.6 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=13.3
Q ss_pred hhhhhHhHHHHHHhhhhhhhhhhhcccccee
Q 039243 134 GWKIVLAGYASGTIIGVVLGYIFCTRKYEWL 164 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 164 (185)
.|.+++.+. +++++++++.++++.+.||.
T Consensus 41 yWpyLA~GG--G~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGG--GLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccc--hhhhHHHHHHHHHHhhhhhh
Confidence 566666653 33333333444444444443
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=73.97 E-value=1.1 Score=31.49 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=18.2
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhhccc
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFCTRK 160 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (185)
..-++||+++++.+.++++++++.|.
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~ 72 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFI 72 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhhee
Confidence 34578888888877777766666544
No 95
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=69.93 E-value=1.9 Score=31.22 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=3.2
Q ss_pred hHhHHHHH
Q 039243 138 VLAGYASG 145 (185)
Q Consensus 138 ~~~~~~~~ 145 (185)
++++++++
T Consensus 80 iivgvi~~ 87 (179)
T PF13908_consen 80 IIVGVICG 87 (179)
T ss_pred eeeehhhH
Confidence 34444333
No 96
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=68.13 E-value=4.8 Score=28.05 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=7.6
Q ss_pred hHHHHHHhhhhhhhhhhhccc
Q 039243 140 AGYASGTIIGVVLGYIFCTRK 160 (185)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ 160 (185)
+++++.+++++++++++-.++
T Consensus 36 iaIvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 36 IAIVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333333333333
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=67.44 E-value=9.4 Score=26.07 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 039243 103 GLCGEPLS 110 (185)
Q Consensus 103 ~~c~~~~~ 110 (185)
..|.|+..
T Consensus 67 ~~CrC~~G 74 (139)
T PHA03099 67 MYCRCSHG 74 (139)
T ss_pred ceeECCCC
Confidence 44655543
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.36 E-value=4.1 Score=34.82 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCCCCCEEeCCCCcCCCCC--chHhhcCCCCcEEEecCC--cCcCCCCC--CCcccccccccccCCCC
Q 039243 42 NLTVIESLDLSSNKLTGQI--PQQLAELTSLAFFDVSHN--HLRGAIPQ--GTQFSTFANDWFAGNPG 103 (185)
Q Consensus 42 ~l~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~l~l~~N--~l~~~~p~--~~~~~~l~~~~~~~n~~ 103 (185)
+.+.+..++|++|++.... ..--...++|..|+|++| .+. ..++ ......++.+.+.|||.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcc
Confidence 3456667777777775211 111224467788888887 333 1121 12344566777888874
No 99
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=66.75 E-value=4.7 Score=25.52 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=9.1
Q ss_pred HHHHHHhhhhhhhhhhhc
Q 039243 141 GYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~ 158 (185)
.+++++++.++++.+.|+
T Consensus 38 lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445455555555554
No 100
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=66.23 E-value=5 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=17.2
Q ss_pred hhhhHhHHHHHHhhh-hhhhhhhhccccceeehh
Q 039243 135 WKIVLAGYASGTIIG-VVLGYIFCTRKYEWLIKT 167 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~ 167 (185)
|..++++.+++++.+ +.+++++++.|.+|-.+.
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r~~~a~kk 49 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHRFHWAAKK 49 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhhhcccccc
Confidence 444554444444433 443666666777764333
No 101
>PF15179 Myc_target_1: Myc target protein 1
Probab=65.59 E-value=7.7 Score=28.19 Aligned_cols=7 Identities=57% Similarity=0.933 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 039243 143 ASGTIIG 149 (185)
Q Consensus 143 ~~~~~~~ 149 (185)
+++++++
T Consensus 30 ~iGLviG 36 (197)
T PF15179_consen 30 AIGLVIG 36 (197)
T ss_pred HHHHHHH
Confidence 3333333
No 102
>PRK11677 hypothetical protein; Provisional
Probab=63.50 E-value=6.5 Score=27.20 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=10.2
Q ss_pred hhhhHhHHHHHHhhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLGY 154 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~ 154 (185)
|.++++++++|++++.+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555444433
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=3.7 Score=32.71 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=30.2
Q ss_pred cccceeeccccccc---CCCcccccCCCCCCEEeCCCCc-CCCCCchHhhcCCCCcEEEecCCc
Q 039243 20 KGLQTLNLSNNNLR---GYIPLTLSNLTVIESLDLSSNK-LTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
++|..|+|++..=. ..+.--....++|.+|||+.+. ++-..-..|.+++.|+++.++...
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 34556666654211 0111112445677777776553 442223345566667776666554
No 104
>PHA03164 hypothetical protein; Provisional
Probab=61.64 E-value=6.7 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=9.2
Q ss_pred hhHhHHHHHHhhhhhhhhhhh
Q 039243 137 IVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+++.+++++.+..+++++.++
T Consensus 61 lvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHhe
Confidence 344444444444444444333
No 105
>PF15069 FAM163: FAM163 family
Probab=60.86 E-value=2.9 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=10.9
Q ss_pred hHhHHHHHHhhhhhhhhhhhccc
Q 039243 138 VLAGYASGTIIGVVLGYIFCTRK 160 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~ 160 (185)
++.|.+.+.++++.++.++|..|
T Consensus 7 VItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHh
Confidence 34444455555555554444333
No 106
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=60.26 E-value=7.8 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=10.4
Q ss_pred HHHhhhhhhhhhhhcccccee
Q 039243 144 SGTIIGVVLGYIFCTRKYEWL 164 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~w~ 164 (185)
++++++++.+.+++.|+.+|.
T Consensus 11 ivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 333444444445555665654
No 107
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.69 E-value=5.4 Score=34.10 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=5.6
Q ss_pred CCEEeCCCCcCC
Q 039243 46 IESLDLSSNKLT 57 (185)
Q Consensus 46 L~~L~l~~N~l~ 57 (185)
|++|.+.+|.+.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 444444444443
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.49 E-value=10 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.741 Sum_probs=10.4
Q ss_pred hhhhhHhHHHHHHhhhhhhhhhhhc
Q 039243 134 GWKIVLAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.|.+.++|+++ ++++++++.+
T Consensus 7 ~W~~a~igLvv----Gi~IG~li~R 27 (138)
T COG3105 7 TWEYALIGLVV----GIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHH----HHHHHHHHHH
Confidence 35555555444 4444444443
No 109
>PF15050 SCIMP: SCIMP protein
Probab=57.01 E-value=6.8 Score=26.36 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=17.6
Q ss_pred hhHhHHHHHHhhhhhhhhhhhccccceeehhcccc
Q 039243 137 IVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQ 171 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 171 (185)
+.+|..++.+++.++++++++|. -||..|....|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCv-cR~~lRqGkkw 41 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCV-CRWQLRQGKKW 41 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccccc
Confidence 34454444455555555555554 45665555444
No 110
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.94 E-value=11 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=7.0
Q ss_pred HhHHHHHHhhhhhhhh
Q 039243 139 LAGYASGTIIGVVLGY 154 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (185)
+|+++.+++++++-.+
T Consensus 35 aIGvi~gi~~~~lt~l 50 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYL 50 (68)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 111
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=55.43 E-value=25 Score=21.86 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.4
Q ss_pred hHhHHHHH
Q 039243 138 VLAGYASG 145 (185)
Q Consensus 138 ~~~~~~~~ 145 (185)
+++|++++
T Consensus 35 ~LaGiV~~ 42 (79)
T PF07213_consen 35 LLAGIVAA 42 (79)
T ss_pred HHHHHHHH
Confidence 34444443
No 112
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=54.63 E-value=11 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=11.1
Q ss_pred hhhHhHHHHHHhhhhhhhhhhh
Q 039243 136 KIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..++..+++++++++++++++.
T Consensus 270 ~~~vPIaVG~~La~lvlivLia 291 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIA 291 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555554
No 113
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=54.53 E-value=6.6 Score=29.13 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=8.2
Q ss_pred hhhccccceeehhcc
Q 039243 155 IFCTRKYEWLIKTFR 169 (185)
Q Consensus 155 ~~~~~~~~w~~~~~~ 169 (185)
.+++.||.|..+..+
T Consensus 122 Y~~~~Rrs~~~~~~r 136 (202)
T PF06365_consen 122 YCCHQRRSWSKKGQR 136 (202)
T ss_pred HHhhhhccCCcchhh
Confidence 345556667655543
No 114
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=49.50 E-value=17 Score=23.50 Aligned_cols=27 Identities=37% Similarity=0.819 Sum_probs=13.9
Q ss_pred hhhhhHhHHHHHHh-hhhhhhhhhhccc
Q 039243 134 GWKIVLAGYASGTI-IGVVLGYIFCTRK 160 (185)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (185)
.|.+++|.++.+++ +++++.+.||.++
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36666666554443 3444455555433
No 115
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.26 E-value=16 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.026 Sum_probs=8.6
Q ss_pred hhhhhhhhhhhcccccee
Q 039243 147 IIGVVLGYIFCTRKYEWL 164 (185)
Q Consensus 147 ~~~~~~~~~~~~~~~~w~ 164 (185)
+++++.+.++++|+.+|.
T Consensus 14 ~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 14 VIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 334444444555555554
No 116
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.62 E-value=15 Score=29.01 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=9.8
Q ss_pred HhHHHHHHhhhhhhhhhhhc
Q 039243 139 LAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~ 158 (185)
+++.++++++.++++++++.
T Consensus 258 I~aSiiaIliIVLIMvIIYL 277 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYL 277 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555553
No 117
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=45.77 E-value=18 Score=29.30 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=12.3
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhhccc
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFCTRK 160 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (185)
+.++++|+++.++++++.++++|.+|
T Consensus 320 i~i~~vgLG~P~l~li~Ggl~v~~~r 345 (350)
T PF15065_consen 320 IMIMAVGLGVPLLLLILGGLYVCLRR 345 (350)
T ss_pred HHHHHHHhhHHHHHHHHhhheEEEec
Confidence 33444444444555555555555433
No 118
>PHA03265 envelope glycoprotein D; Provisional
Probab=45.46 E-value=8.5 Score=30.97 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=8.8
Q ss_pred hhhHhHHHHHHhhhhhhhhhhh
Q 039243 136 KIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+.++||.+++-++++-+++.+|
T Consensus 350 ~g~~ig~~i~glv~vg~il~~~ 371 (402)
T PHA03265 350 VGISVGLGIAGLVLVGVILYVC 371 (402)
T ss_pred cceEEccchhhhhhhhHHHHHH
Confidence 3444444443333333333333
No 119
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=43.95 E-value=8.1 Score=28.24 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=11.8
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhhc
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+..++|++-+++++++++++.++.
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhhe
Confidence 334555555555555444444443
No 120
>PRK09458 pspB phage shock protein B; Provisional
Probab=42.57 E-value=28 Score=21.46 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=10.1
Q ss_pred Hhhhhhhhhhhhccccceee
Q 039243 146 TIIGVVLGYIFCTRKYEWLI 165 (185)
Q Consensus 146 ~~~~~~~~~~~~~~~~~w~~ 165 (185)
++++++-+-+++.|+-+|..
T Consensus 13 F~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 13 FVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred HHHHHHHHHHHHhhcccccC
Confidence 33344444455566666543
No 121
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=40.50 E-value=21 Score=23.85 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=4.5
Q ss_pred hhhccccce
Q 039243 155 IFCTRKYEW 163 (185)
Q Consensus 155 ~~~~~~~~w 163 (185)
++++|.|+|
T Consensus 116 v~~cW~k~w 124 (127)
T PF06040_consen 116 VLICWFKKW 124 (127)
T ss_pred hheeeeecc
Confidence 344455555
No 122
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.16 E-value=26 Score=23.91 Aligned_cols=16 Identities=38% Similarity=0.812 Sum_probs=7.5
Q ss_pred hHhHHHHHHhhhhhhh
Q 039243 138 VLAGYASGTIIGVVLG 153 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~ 153 (185)
+++++++|++++.+++
T Consensus 2 ~~i~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIG 17 (128)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444455554444443
No 123
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=38.18 E-value=13 Score=26.16 Aligned_cols=25 Identities=8% Similarity=-0.170 Sum_probs=10.1
Q ss_pred hHhHHHHHHhhhhhhhhhhhccccc
Q 039243 138 VLAGYASGTIIGVVLGYIFCTRKYE 162 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (185)
++||+...+++++..+-+++.|+++
T Consensus 12 i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHHHhcceEEEeecc
Confidence 3344333333333334444444443
No 124
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=38.12 E-value=21 Score=33.37 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.5
Q ss_pred hhhhhhHhHHHHHHhhhhhhhhhhhc
Q 039243 133 FGWKIVLAGYASGTIIGVVLGYIFCT 158 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
..|.+++++++++++++++++++.++
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888777777654
No 125
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=37.31 E-value=74 Score=19.57 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=9.2
Q ss_pred hhhHhHHHHHHhhhhhhhh
Q 039243 136 KIVLAGYASGTIIGVVLGY 154 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (185)
.++++++++|+++++.+++
T Consensus 60 lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 60 LILALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443
No 126
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=36.93 E-value=47 Score=21.46 Aligned_cols=17 Identities=12% Similarity=0.170 Sum_probs=6.8
Q ss_pred Hhhhhhhhhhhhccccc
Q 039243 146 TIIGVVLGYIFCTRKYE 162 (185)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (185)
++++..+++++..+-|+
T Consensus 15 lligftivvl~vyfgrk 31 (126)
T PF13120_consen 15 LLIGFTIVVLLVYFGRK 31 (126)
T ss_pred HHHHHHHHhhhheecce
Confidence 33443344444434333
No 127
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=36.26 E-value=48 Score=17.65 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=10.8
Q ss_pred hhHhHHHHHHhhhhhhhhhhh
Q 039243 137 IVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..+++.++++.++.++.++|+
T Consensus 10 LWlVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 10 LWLVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhee
Confidence 345555565555555554443
No 128
>PRK01844 hypothetical protein; Provisional
Probab=36.23 E-value=39 Score=20.63 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=7.1
Q ss_pred HHHhhhhhhhhhhh
Q 039243 144 SGTIIGVVLGYIFC 157 (185)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (185)
+++++++++++++-
T Consensus 12 ~~li~G~~~Gff~a 25 (72)
T PRK01844 12 VALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 129
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=36.19 E-value=14 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=8.4
Q ss_pred hHhHHHHHHhhhhhhhhhhh
Q 039243 138 VLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (185)
+.|++++++||+.++.|+.|
T Consensus 370 aGIsvavvvvVgglvGfLcW 389 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCW 389 (397)
T ss_pred eeeeehhHHHHHHHHHHHhh
Confidence 33333344444444444443
No 130
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.17 E-value=39 Score=20.47 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=10.8
Q ss_pred hHHHHHHhhhhhhhhhhh
Q 039243 140 AGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ 157 (185)
+.++++++++++.++++.
T Consensus 8 l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665443
No 131
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=36.01 E-value=33 Score=19.84 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=9.3
Q ss_pred hhhhHhHHHHHHhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLG 153 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (185)
+.++++|++.++++++.++
T Consensus 31 ~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 31 VHFIIVGIILAALFVAGLV 49 (56)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4455555555544444333
No 132
>PHA03291 envelope glycoprotein I; Provisional
Probab=35.51 E-value=18 Score=29.16 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=15.9
Q ss_pred hhhHhHHHHHHhhhhhhhhhhhcc
Q 039243 136 KIVLAGYASGTIIGVVLGYIFCTR 159 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~ 159 (185)
.++-|++-+.+++.++++-++|+.
T Consensus 287 qiiQiAIPasii~cV~lGSC~Ccl 310 (401)
T PHA03291 287 QIIQIAIPASIIACVFLGSCACCL 310 (401)
T ss_pred hhheeccchHHHHHhhhhhhhhhh
Confidence 455666667777777777666653
No 133
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=35.42 E-value=40 Score=30.36 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.3
Q ss_pred hhhcccccee
Q 039243 155 IFCTRKYEWL 164 (185)
Q Consensus 155 ~~~~~~~~w~ 164 (185)
+++|+++.|.
T Consensus 294 l~yCrrkc~~ 303 (807)
T PF10577_consen 294 LCYCRRKCLK 303 (807)
T ss_pred HHhhhcccCC
Confidence 3334444443
No 134
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.14 E-value=22 Score=31.16 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.4
Q ss_pred hhhhhHhHH
Q 039243 134 GWKIVLAGY 142 (185)
Q Consensus 134 ~~~~~~~~~ 142 (185)
.|+++.+.+
T Consensus 269 lWII~gVlv 277 (684)
T PF12877_consen 269 LWIIAGVLV 277 (684)
T ss_pred eEEEehHhH
Confidence 465555433
No 135
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=34.21 E-value=38 Score=25.67 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=5.4
Q ss_pred hhhhhhhhhhhccc
Q 039243 147 IIGVVLGYIFCTRK 160 (185)
Q Consensus 147 ~~~~~~~~~~~~~~ 160 (185)
+++++++++..||+
T Consensus 203 ~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 203 SVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHhhc
Confidence 33333333333443
No 136
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.65 E-value=32 Score=25.93 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=3.9
Q ss_pred hhhHhHHHH
Q 039243 136 KIVLAGYAS 144 (185)
Q Consensus 136 ~~~~~~~~~ 144 (185)
.-++|++++
T Consensus 16 LNiaI~IV~ 24 (217)
T PF07423_consen 16 LNIAIGIVS 24 (217)
T ss_pred HHHHHHHHH
Confidence 334444433
No 137
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=32.84 E-value=34 Score=28.20 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=5.6
Q ss_pred hhHhHHHHHHhhhh
Q 039243 137 IVLAGYASGTIIGV 150 (185)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (185)
++++++.+.+++++
T Consensus 387 ~i~~avl~p~~il~ 400 (436)
T PTZ00208 387 MIILAVLVPAIILA 400 (436)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 138
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.83 E-value=29 Score=19.56 Aligned_cols=6 Identities=50% Similarity=1.099 Sum_probs=2.2
Q ss_pred hhhhhc
Q 039243 153 GYIFCT 158 (185)
Q Consensus 153 ~~~~~~ 158 (185)
++.+|.
T Consensus 17 g~~I~~ 22 (50)
T PF12606_consen 17 GLSICT 22 (50)
T ss_pred HHHHHH
Confidence 333333
No 139
>PRK00523 hypothetical protein; Provisional
Probab=31.89 E-value=45 Score=20.35 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=5.6
Q ss_pred HHhhhhhhhhhh
Q 039243 145 GTIIGVVLGYIF 156 (185)
Q Consensus 145 ~~~~~~~~~~~~ 156 (185)
++++++++++++
T Consensus 14 ~li~G~~~Gffi 25 (72)
T PRK00523 14 LLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHH
Confidence 344455444443
No 140
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.71 E-value=43 Score=20.24 Aligned_cols=19 Identities=32% Similarity=0.746 Sum_probs=12.1
Q ss_pred HhHHHHHHhhhhhhhhhhh
Q 039243 139 LAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (185)
+.++++++++++++++++-
T Consensus 2 ~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3456666677776666654
No 141
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.51 E-value=47 Score=26.95 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=5.3
Q ss_pred ccchhccccc
Q 039243 174 SNGRRRRHRH 183 (185)
Q Consensus 174 ~~~r~~~~~~ 183 (185)
+|||+||+++
T Consensus 334 RYRRKKKMkK 343 (353)
T TIGR01477 334 RYRRKKKMKK 343 (353)
T ss_pred HhhhcchhHH
Confidence 3566655544
No 142
>PTZ00046 rifin; Provisional
Probab=30.50 E-value=47 Score=27.02 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=5.3
Q ss_pred ccchhccccc
Q 039243 174 SNGRRRRHRH 183 (185)
Q Consensus 174 ~~~r~~~~~~ 183 (185)
+|||+||+++
T Consensus 339 RYRRKKKMkK 348 (358)
T PTZ00046 339 RYRRKKKMKK 348 (358)
T ss_pred HhhhcchhHH
Confidence 3456555544
No 143
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.22 E-value=6.8 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=15.5
Q ss_pred cceeecccccccCCCcccccCCCCCCEEeCC
Q 039243 22 LQTLNLSNNNLRGYIPLTLSNLTVIESLDLS 52 (185)
Q Consensus 22 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 52 (185)
++.+|-++..|.+.--..+.++++++.|.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~ 133 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLA 133 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheec
Confidence 4555666655554433444445555544443
No 144
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=30.11 E-value=37 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=7.0
Q ss_pred hHhHHHHHHhhhhhhhh
Q 039243 138 VLAGYASGTIIGVVLGY 154 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (185)
++..+.+++++++++++
T Consensus 5 V~~iilg~~ll~~Ligi 21 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGI 21 (49)
T ss_pred EeHHHHHHHHHHHHHHH
Confidence 33333344444444444
No 145
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.05 E-value=33 Score=15.89 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=5.5
Q ss_pred CCCCEEeCCCC
Q 039243 44 TVIESLDLSSN 54 (185)
Q Consensus 44 ~~L~~L~l~~N 54 (185)
++|++|++++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555544
No 146
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=29.72 E-value=45 Score=23.39 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=4.0
Q ss_pred hHHHHHHhhhh
Q 039243 140 AGYASGTIIGV 150 (185)
Q Consensus 140 ~~~~~~~~~~~ 150 (185)
+++++++++++
T Consensus 122 ~~~i~g~ll~i 132 (145)
T PF10661_consen 122 LLSIGGILLAI 132 (145)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 147
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.99 E-value=60 Score=27.28 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCchhhhhhhhhhhHhHHHHHHhhhhhhhhhhhccccceeehhccccccccchhccccccC
Q 039243 115 NSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRRRHRHRM 185 (185)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~r~~~~~~~~ 185 (185)
....+.................+..+++++.+++.++.+.+.+.+| +|||++..++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~---------------r~~~~r~~~~ 426 (492)
T PHA03286 371 FTAAPTHTIAFKEGPTVIYSLLVSSMAAGAILVVLLFALCIAGLYR---------------RRRRHRTNGY 426 (492)
T ss_pred cccCCcchhhhccCCeEEHHHHHHHHHHHHHHHHHHHHHHhHhHhh---------------hhhhhhcccc
No 148
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=27.95 E-value=91 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=12.1
Q ss_pred HHHHHhhhhhhhhhhhccccce
Q 039243 142 YASGTIIGVVLGYIFCTRKYEW 163 (185)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~w 163 (185)
..+++++++++++++|++|.+.
T Consensus 305 l~Valll~~~La~imc~rrEg~ 326 (449)
T KOG4482|consen 305 LGVALLLVLALAYIMCCRREGQ 326 (449)
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3444555555566666666443
No 149
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.91 E-value=57 Score=19.86 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.2
Q ss_pred hhHhHHHHHHhhhhhhhhh
Q 039243 137 IVLAGYASGTIIGVVLGYI 155 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (185)
+.++|.+++++++++++++
T Consensus 7 i~i~Gm~iVF~~L~lL~~~ 25 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILV 25 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 150
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=27.88 E-value=74 Score=19.60 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=13.8
Q ss_pred hhHhHHHHHHhhhhhhhhhhhcc
Q 039243 137 IVLAGYASGTIIGVVLGYIFCTR 159 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (185)
-.++-.+.+++++++..++++++
T Consensus 28 ~~l~k~~~G~~~G~~~s~l~frr 50 (75)
T PF04418_consen 28 DTLVKTGLGFGIGVVFSLLFFRR 50 (75)
T ss_pred HHHHHHhhhhhHHHHHHHHHHcc
Confidence 34444556667777776666644
No 151
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=27.53 E-value=75 Score=17.48 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 039243 151 VLGYIFC 157 (185)
Q Consensus 151 ~~~~~~~ 157 (185)
+++++++
T Consensus 22 F~gi~~w 28 (49)
T PF05545_consen 22 FIGIVIW 28 (49)
T ss_pred HHHHHHH
Confidence 3333333
No 152
>PRK10132 hypothetical protein; Provisional
Probab=27.25 E-value=64 Score=21.40 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=8.6
Q ss_pred hhhhhHhHHHHHHhhhh
Q 039243 134 GWKIVLAGYASGTIIGV 150 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ 150 (185)
.|..+.|+.++|+++++
T Consensus 86 Pw~svgiaagvG~llG~ 102 (108)
T PRK10132 86 PWCSVGTAAAVGIFIGA 102 (108)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555555555444443
No 153
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.71 E-value=39 Score=26.54 Aligned_cols=18 Identities=33% Similarity=0.250 Sum_probs=7.4
Q ss_pred hHhHHHHHHhhhhhhhhh
Q 039243 138 VLAGYASGTIIGVVLGYI 155 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~ 155 (185)
+.++++++++++++++.+
T Consensus 232 IslAiALG~v~ll~l~Gi 249 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGI 249 (281)
T ss_pred EehHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 154
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=34 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHhhhhhhhhhhhc
Q 039243 144 SGTIIGVVLGYIFCT 158 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (185)
+++....+++++++.
T Consensus 15 agiag~af~gYciYF 29 (143)
T KOG4056|consen 15 AGIAGLAFIGYCIYF 29 (143)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444445555543
No 155
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=25.83 E-value=31 Score=19.62 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=5.9
Q ss_pred hhhccccceeehhccccccccchhcc
Q 039243 155 IFCTRKYEWLIKTFRLQPESNGRRRR 180 (185)
Q Consensus 155 ~~~~~~~~w~~~~~~~~~~~~~r~~~ 180 (185)
+...+..+|..+.-..+.++.+.|.|
T Consensus 16 la~s~~wp~~~r~~~~~i~sp~~r~K 41 (56)
T PF08138_consen 16 LAQSWEWPWQRRTTKFPIPSPNDRDK 41 (56)
T ss_dssp ------S---S---S-SSSS-STTSS
T ss_pred HHhcccccccCCCCCCCCCCCCcHHH
Confidence 34445555655544445555444444
No 156
>PRK10692 hypothetical protein; Provisional
Probab=25.60 E-value=42 Score=21.30 Aligned_cols=8 Identities=13% Similarity=0.816 Sum_probs=4.7
Q ss_pred cceeehhc
Q 039243 161 YEWLIKTF 168 (185)
Q Consensus 161 ~~w~~~~~ 168 (185)
|.|..|.+
T Consensus 72 RYwwvkh~ 79 (92)
T PRK10692 72 RYWWVRHY 79 (92)
T ss_pred hHHHHhhc
Confidence 44666665
No 157
>PRK10404 hypothetical protein; Provisional
Probab=25.44 E-value=63 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=8.7
Q ss_pred hhhhhHhHHHHHHhhhh
Q 039243 134 GWKIVLAGYASGTIIGV 150 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ 150 (185)
.|..+.|+.++++++++
T Consensus 80 Pw~avGiaagvGlllG~ 96 (101)
T PRK10404 80 PWQGIGVGAAVGLVLGL 96 (101)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 158
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.07 E-value=52 Score=19.63 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=5.0
Q ss_pred HHhhhhhhhhhh
Q 039243 145 GTIIGVVLGYIF 156 (185)
Q Consensus 145 ~~~~~~~~~~~~ 156 (185)
++++++++++++
T Consensus 6 ali~G~~~Gff~ 17 (64)
T PF03672_consen 6 ALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 159
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=24.41 E-value=66 Score=23.25 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=4.7
Q ss_pred cccceeehh
Q 039243 159 RKYEWLIKT 167 (185)
Q Consensus 159 ~~~~w~~~~ 167 (185)
.+||++++.
T Consensus 139 qkKKlCF~i 147 (169)
T PF12301_consen 139 QKKKLCFKI 147 (169)
T ss_pred Hhhccceee
Confidence 455565544
No 160
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=23.86 E-value=42 Score=18.15 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q 039243 101 NPGLCGEPL 109 (185)
Q Consensus 101 n~~~c~~~~ 109 (185)
||+.|+|..
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 788898754
No 161
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=23.60 E-value=36 Score=26.67 Aligned_cols=8 Identities=25% Similarity=0.733 Sum_probs=3.0
Q ss_pred hHhHHHHH
Q 039243 138 VLAGYASG 145 (185)
Q Consensus 138 ~~~~~~~~ 145 (185)
++++++++
T Consensus 215 iv~g~~~G 222 (278)
T PF06697_consen 215 IVVGVVGG 222 (278)
T ss_pred EEEEehHH
Confidence 33343333
No 162
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.51 E-value=48 Score=26.10 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=3.2
Q ss_pred ccccce
Q 039243 158 TRKYEW 163 (185)
Q Consensus 158 ~~~~~w 163 (185)
.+||+|
T Consensus 312 fkrk~W 317 (318)
T TIGR00383 312 FRRKGW 317 (318)
T ss_pred HHHcCC
Confidence 345566
No 163
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.44 E-value=6.3 Score=33.37 Aligned_cols=60 Identities=32% Similarity=0.376 Sum_probs=29.7
Q ss_pred cceeecccccccCC----CcccccCC-CCCCEEeCCCCcCCCCCch----HhhcCCCCcEEEecCCcCc
Q 039243 22 LQTLNLSNNNLRGY----IPLTLSNL-TVIESLDLSSNKLTGQIPQ----QLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 22 L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~l~l~~N~l~ 81 (185)
+..+++.+|++... ....+..+ ..++.++++.|.|+..-.. .+..+..++.+.+++|++.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44456666655422 11223333 4556666666666543322 2333445666666666553
No 164
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.35 E-value=89 Score=17.98 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=3.1
Q ss_pred HHHhhhhh
Q 039243 144 SGTIIGVV 151 (185)
Q Consensus 144 ~~~~~~~~ 151 (185)
++++++-+
T Consensus 13 lgvIigNi 20 (55)
T PF11446_consen 13 LGVIIGNI 20 (55)
T ss_pred HHHHHhHH
Confidence 33344433
No 165
>PRK10591 hypothetical protein; Provisional
Probab=22.76 E-value=82 Score=20.23 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=9.5
Q ss_pred hhhhccccceeehhcccccccc
Q 039243 154 YIFCTRKYEWLIKTFRLQPESN 175 (185)
Q Consensus 154 ~~~~~~~~~w~~~~~~~~~~~~ 175 (185)
.++|+.-+..-...+...+..+
T Consensus 62 ~ivWR~a~~lap~l~~~~~~~~ 83 (92)
T PRK10591 62 VIIWRVAKGLAPQLMNRPPQYS 83 (92)
T ss_pred HHHHHHHHHhcHHhccCCchhh
Confidence 3344433444444454444433
No 166
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.25 E-value=56 Score=26.03 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.3
Q ss_pred hhhccccce
Q 039243 155 IFCTRKYEW 163 (185)
Q Consensus 155 ~~~~~~~~w 163 (185)
.++.+|++|
T Consensus 313 ~~~frrk~W 321 (322)
T COG0598 313 YLYFRRKGW 321 (322)
T ss_pred HHHHHhcCc
Confidence 333355555
No 167
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=22.25 E-value=81 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=8.3
Q ss_pred hhhhhHhHHHHHHhhhh
Q 039243 134 GWKIVLAGYASGTIIGV 150 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ 150 (185)
.|..+.+++++|++++.
T Consensus 73 P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGL 89 (94)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35555555555444443
No 168
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.20 E-value=36 Score=18.59 Aligned_cols=13 Identities=8% Similarity=-0.153 Sum_probs=4.8
Q ss_pred HHHHhhhhhhhhh
Q 039243 143 ASGTIIGVVLGYI 155 (185)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (185)
+++++++++.++.
T Consensus 12 g~t~~~l~~l~~~ 24 (46)
T PF04995_consen 12 GVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 169
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=81 Score=20.76 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=10.8
Q ss_pred hhhhhHhHHHHHHhhhhh
Q 039243 134 GWKIVLAGYASGTIIGVV 151 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (185)
.|-.+.|+.+++++++++
T Consensus 83 PWq~VGvaAaVGlllGlL 100 (104)
T COG4575 83 PWQGVGVAAAVGLLLGLL 100 (104)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 466666666666655544
Done!