Query 039243
Match_columns 185
No_of_seqs 281 out of 2173
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.8 8.4E-21 2.9E-25 164.2 8.8 116 1-117 637-752 (768)
2 3j0a_A TOLL-like receptor 5; m 99.8 8.6E-19 2.9E-23 153.0 8.5 105 1-109 456-565 (844)
3 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 124.6 8.2 108 1-108 62-170 (220)
4 2wfh_A SLIT homolog 2 protein 99.7 2E-17 6.7E-22 120.8 8.7 107 1-108 36-143 (193)
5 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.3E-22 121.6 7.6 109 1-109 34-144 (192)
6 2v9t_B SLIT homolog 2 protein 99.7 2E-17 6.8E-22 123.1 8.6 108 1-108 61-169 (220)
7 1ogq_A PGIP-2, polygalacturona 99.7 2.8E-17 9.4E-22 128.3 6.8 111 1-113 202-312 (313)
8 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 8E-21 117.9 10.2 106 2-108 70-176 (229)
9 3g39_A Variable lymphocyte rec 99.7 2.6E-16 9E-21 112.5 9.5 105 1-108 14-119 (170)
10 2o6r_A Variable lymphocyte rec 99.7 2.7E-16 9.1E-21 112.9 9.2 108 1-108 33-141 (177)
11 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4E-21 134.3 8.4 108 1-108 474-584 (635)
12 1p9a_G Platelet glycoprotein I 99.7 5.5E-16 1.9E-20 119.9 10.1 108 1-108 105-212 (290)
13 2r9u_A Variable lymphocyte rec 99.6 6.8E-16 2.3E-20 110.8 9.7 105 1-108 17-122 (174)
14 3m19_A Variable lymphocyte rec 99.6 1.7E-15 5.7E-20 114.5 10.6 100 2-101 65-165 (251)
15 2o6s_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 111.0 10.6 106 2-107 58-164 (208)
16 2ifg_A High affinity nerve gro 99.6 1.1E-15 3.8E-20 120.5 9.3 105 2-108 14-120 (347)
17 3rfs_A Internalin B, repeat mo 99.6 2.7E-15 9.4E-20 114.7 10.5 106 2-107 115-221 (272)
18 2o6q_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 114.0 10.4 107 2-108 115-222 (270)
19 1w8a_A SLIT protein; signaling 99.6 3.5E-16 1.2E-20 113.9 3.5 108 1-108 59-166 (192)
20 3v47_A TOLL-like receptor 5B a 99.6 3.5E-15 1.2E-19 121.3 8.6 108 1-108 304-412 (455)
21 2v9t_B SLIT homolog 2 protein 99.6 7.4E-15 2.5E-19 109.1 8.7 104 1-104 37-141 (220)
22 3g39_A Variable lymphocyte rec 99.6 7.4E-15 2.5E-19 105.0 7.8 86 1-86 35-120 (170)
23 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.3E-19 108.0 9.5 103 1-104 45-148 (229)
24 1ozn_A Reticulon 4 receptor; N 99.5 5E-15 1.7E-19 113.7 5.6 101 1-101 110-211 (285)
25 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-14 3.9E-19 122.2 8.2 103 1-103 57-160 (635)
26 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-14 7.3E-19 106.6 8.5 104 1-104 37-142 (220)
27 2r9u_A Variable lymphocyte rec 99.5 2.1E-14 7.3E-19 103.0 7.8 85 1-85 38-122 (174)
28 3vq2_A TLR4, TOLL-like recepto 99.5 1E-14 3.6E-19 122.6 6.7 108 1-109 453-563 (606)
29 3zyi_A Leucine-rich repeat-con 99.5 2E-14 7E-19 117.2 8.2 107 1-109 201-308 (452)
30 3m19_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 105.8 9.9 103 1-103 40-143 (251)
31 3zyj_A Leucine-rich repeat-con 99.5 2.5E-14 8.6E-19 116.3 8.1 107 1-109 190-297 (440)
32 3rgz_A Protein brassinosteroid 99.5 1.3E-14 4.5E-19 125.5 6.7 103 2-104 614-717 (768)
33 2z66_A Variable lymphocyte rec 99.5 1.8E-14 6.3E-19 111.5 6.7 103 1-103 131-235 (306)
34 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 101.5 10.0 104 1-104 33-137 (208)
35 2je0_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 98.3 7.2 101 1-103 22-125 (149)
36 2z63_A TOLL-like receptor 4, v 99.5 4.7E-14 1.6E-18 117.5 8.1 109 1-109 426-536 (570)
37 1ogq_A PGIP-2, polygalacturona 99.5 1.9E-14 6.6E-19 112.2 5.1 102 1-102 55-160 (313)
38 2id5_A Lingo-1, leucine rich r 99.5 3.3E-14 1.1E-18 116.4 6.1 108 1-108 229-337 (477)
39 2ell_A Acidic leucine-rich nuc 99.5 7.1E-14 2.4E-18 99.2 7.1 101 1-103 29-132 (168)
40 2wfh_A SLIT homolog 2 protein 99.5 2E-14 6.9E-19 104.7 3.8 85 1-85 59-143 (193)
41 3rfs_A Internalin B, repeat mo 99.5 2.6E-13 8.8E-18 103.7 9.9 101 2-102 91-192 (272)
42 2xot_A Amphoterin-induced prot 99.5 7.7E-14 2.6E-18 110.8 6.8 80 2-81 70-149 (361)
43 2xot_A Amphoterin-induced prot 99.4 1.1E-13 3.9E-18 109.8 7.1 104 1-104 44-149 (361)
44 1ziw_A TOLL-like receptor 3; i 99.4 9.6E-14 3.3E-18 118.2 6.7 93 17-109 533-627 (680)
45 4fcg_A Uncharacterized protein 99.4 4E-13 1.4E-17 105.4 9.1 102 1-104 155-266 (328)
46 3t6q_A CD180 antigen; protein- 99.4 7.5E-14 2.6E-18 117.3 5.2 106 2-108 455-564 (606)
47 1p9a_G Platelet glycoprotein I 99.4 6.2E-13 2.1E-17 102.6 9.7 103 1-104 82-185 (290)
48 2o6q_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 100.3 9.9 102 1-102 66-168 (270)
49 2ell_A Acidic leucine-rich nuc 99.4 2.8E-13 9.6E-18 96.1 6.4 101 1-103 54-159 (168)
50 2ft3_A Biglycan; proteoglycan, 99.4 9E-13 3.1E-17 103.2 9.9 103 1-104 198-307 (332)
51 2o6r_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 96.4 6.9 85 1-85 57-141 (177)
52 4ezg_A Putative uncharacterize 99.4 4.5E-13 1.5E-17 97.6 7.5 99 1-102 71-170 (197)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 5.4E-13 1.8E-17 111.5 8.2 106 2-108 383-514 (562)
54 1ozn_A Reticulon 4 receptor; N 99.4 7.4E-13 2.5E-17 101.5 8.4 103 1-103 85-189 (285)
55 3v47_A TOLL-like receptor 5B a 99.4 4.7E-13 1.6E-17 108.7 7.6 104 1-104 280-384 (455)
56 4fcg_A Uncharacterized protein 99.4 8E-13 2.7E-17 103.7 8.6 105 1-107 188-293 (328)
57 1xku_A Decorin; proteoglycan, 99.4 8.2E-13 2.8E-17 103.3 8.6 98 2-103 177-275 (330)
58 2z62_A TOLL-like receptor 4, v 99.4 7.7E-13 2.6E-17 101.0 7.9 102 1-102 33-135 (276)
59 2z62_A TOLL-like receptor 4, v 99.4 3.7E-13 1.3E-17 102.8 6.1 108 1-108 105-241 (276)
60 1dce_A Protein (RAB geranylger 99.4 5.6E-13 1.9E-17 111.9 7.6 99 1-104 446-546 (567)
61 2z7x_B TOLL-like receptor 1, v 99.4 1.3E-12 4.4E-17 108.0 9.5 104 2-108 380-485 (520)
62 3zyi_A Leucine-rich repeat-con 99.4 7E-13 2.4E-17 108.1 7.6 100 1-100 80-180 (452)
63 3vq2_A TLR4, TOLL-like recepto 99.4 8.9E-13 3E-17 110.8 8.3 103 1-103 37-140 (606)
64 2z81_A CD282 antigen, TOLL-lik 99.4 8.7E-13 3E-17 109.5 8.1 102 1-102 31-134 (549)
65 2id5_A Lingo-1, leucine rich r 99.4 8.5E-13 2.9E-17 108.0 7.6 101 1-101 37-138 (477)
66 4eco_A Uncharacterized protein 99.4 1.9E-12 6.6E-17 109.9 10.0 101 1-105 493-601 (636)
67 4b8c_D Glucose-repressible alc 99.4 1.1E-12 3.9E-17 112.9 8.6 100 1-104 229-329 (727)
68 2z80_A TOLL-like receptor 2, v 99.4 1.2E-12 4.2E-17 103.3 8.0 102 1-102 57-160 (353)
69 2ifg_A High affinity nerve gro 99.4 6.9E-13 2.3E-17 104.4 6.5 84 1-85 36-120 (347)
70 3oja_B Anopheles plasmodium-re 99.4 1.7E-12 6E-17 109.3 9.2 103 1-103 80-183 (597)
71 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 96.3 4.3 101 1-105 24-127 (176)
72 2je0_A Acidic leucine-rich nuc 99.4 5.3E-13 1.8E-17 92.8 4.8 83 1-85 47-130 (149)
73 3t6q_A CD180 antigen; protein- 99.3 1.5E-12 5.2E-17 109.4 8.0 103 1-103 38-141 (606)
74 3zyj_A Leucine-rich repeat-con 99.3 1.6E-12 5.6E-17 105.5 7.9 100 1-100 69-169 (440)
75 3o6n_A APL1; leucine-rich repe 99.3 6.6E-13 2.3E-17 106.1 5.5 103 1-107 253-355 (390)
76 3oja_A Leucine-rich immune mol 99.3 1.1E-12 3.8E-17 108.2 6.8 103 2-107 150-253 (487)
77 3o6n_A APL1; leucine-rich repe 99.3 3.2E-12 1.1E-16 102.1 9.1 102 1-102 74-176 (390)
78 2xwt_C Thyrotropin receptor; s 99.3 6E-13 2E-17 99.6 4.5 103 1-104 36-143 (239)
79 2z66_A Variable lymphocyte rec 99.3 1.7E-12 5.9E-17 100.4 7.1 101 2-102 107-210 (306)
80 2z81_A CD282 antigen, TOLL-lik 99.3 2.7E-12 9.1E-17 106.6 8.5 104 1-108 392-514 (549)
81 1dce_A Protein (RAB geranylger 99.3 3.2E-12 1.1E-16 107.3 8.9 84 1-87 468-552 (567)
82 1a9n_A U2A', U2A'; complex (nu 99.3 1.8E-12 6.2E-17 92.7 6.4 78 1-81 47-126 (176)
83 3oja_B Anopheles plasmodium-re 99.3 9.3E-13 3.2E-17 111.0 5.5 103 1-107 259-361 (597)
84 2z80_A TOLL-like receptor 2, v 99.3 4.4E-13 1.5E-17 105.8 2.5 47 61-108 270-318 (353)
85 2z7x_B TOLL-like receptor 1, v 99.3 1.9E-12 6.5E-17 107.0 6.2 99 1-102 26-126 (520)
86 4ezg_A Putative uncharacterize 99.3 4.5E-12 1.5E-16 92.2 7.5 98 1-102 49-147 (197)
87 4eco_A Uncharacterized protein 99.3 2.1E-12 7.3E-17 109.6 6.5 100 1-101 211-340 (636)
88 2z63_A TOLL-like receptor 4, v 99.3 4.1E-12 1.4E-16 105.8 7.9 102 1-102 33-135 (570)
89 1ziw_A TOLL-like receptor 3; i 99.3 5E-12 1.7E-16 107.6 8.5 101 1-101 30-131 (680)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.6E-12 1.2E-16 106.5 7.5 99 1-102 57-157 (562)
91 3o53_A Protein LRIM1, AGAP0063 99.3 3.4E-12 1.2E-16 99.5 6.6 99 1-101 125-224 (317)
92 3j0a_A TOLL-like receptor 5; m 99.3 2.9E-12 1E-16 111.9 6.9 84 1-84 29-113 (844)
93 1wwl_A Monocyte differentiatio 99.3 7.1E-13 2.4E-17 103.1 2.4 39 19-57 94-134 (312)
94 4ecn_A Leucine-rich repeat pro 99.3 1.8E-11 6.1E-16 107.2 10.3 100 1-103 702-818 (876)
95 4b8c_D Glucose-repressible alc 99.3 2.8E-12 9.6E-17 110.5 4.7 83 1-86 252-334 (727)
96 2ft3_A Biglycan; proteoglycan, 99.3 9.6E-12 3.3E-16 97.3 7.3 99 1-102 59-158 (332)
97 1wwl_A Monocyte differentiatio 99.3 8.8E-12 3E-16 96.9 6.8 101 2-102 155-264 (312)
98 4ecn_A Leucine-rich repeat pro 99.2 5.2E-12 1.8E-16 110.6 5.5 101 1-102 453-584 (876)
99 3oja_A Leucine-rich immune mol 99.2 3.6E-12 1.2E-16 105.1 3.9 102 1-104 125-227 (487)
100 4glp_A Monocyte differentiatio 99.2 1E-11 3.6E-16 96.4 5.9 100 1-103 174-284 (310)
101 4glp_A Monocyte differentiatio 99.2 1.3E-11 4.4E-16 95.8 6.2 82 1-82 96-183 (310)
102 4fmz_A Internalin; leucine ric 99.2 4E-11 1.4E-15 94.1 8.1 98 1-104 226-324 (347)
103 1xku_A Decorin; proteoglycan, 99.2 6.9E-11 2.4E-15 92.3 8.7 79 2-81 198-276 (330)
104 2xwt_C Thyrotropin receptor; s 99.2 1.5E-11 5E-16 92.0 4.6 101 1-103 60-168 (239)
105 3o53_A Protein LRIM1, AGAP0063 99.1 1.8E-11 6E-16 95.4 4.0 102 1-105 149-251 (317)
106 1h6t_A Internalin B; cell adhe 99.1 6.5E-11 2.2E-15 91.3 6.9 95 1-102 95-189 (291)
107 1h6u_A Internalin H; cell adhe 99.1 5.8E-11 2E-15 92.2 6.3 95 1-102 112-206 (308)
108 1h6t_A Internalin B; cell adhe 99.1 1.6E-10 5.6E-15 89.0 8.6 96 1-103 73-168 (291)
109 1xeu_A Internalin C; cellular 99.1 1.9E-10 6.4E-15 87.5 8.3 93 2-102 69-161 (263)
110 1h6u_A Internalin H; cell adhe 99.1 1.7E-10 6E-15 89.5 8.0 96 1-103 90-185 (308)
111 1xeu_A Internalin C; cellular 99.1 2E-10 6.8E-15 87.3 7.7 98 1-106 90-187 (263)
112 1m9s_A Internalin B; cell inva 99.1 1.6E-10 5.6E-15 97.6 7.6 94 2-102 115-208 (605)
113 1o6v_A Internalin A; bacterial 99.0 2.7E-10 9.3E-15 93.1 6.8 94 1-101 270-363 (466)
114 4ay9_X Follicle-stimulating ho 99.0 2E-10 6.7E-15 90.7 5.2 85 1-85 35-121 (350)
115 1m9s_A Internalin B; cell inva 99.0 7E-10 2.4E-14 93.7 8.9 94 2-102 93-186 (605)
116 1o6v_A Internalin A; bacterial 99.0 7.9E-10 2.7E-14 90.3 8.5 97 1-104 248-344 (466)
117 1ds9_A Outer arm dynein; leuci 99.0 2.2E-12 7.4E-17 94.0 -6.3 98 2-103 24-127 (198)
118 1ds9_A Outer arm dynein; leuci 99.0 1.9E-12 6.7E-17 94.3 -6.9 101 1-106 53-155 (198)
119 3bz5_A Internalin-J, INLJ; leu 98.9 2.3E-09 7.9E-14 87.6 8.8 91 1-101 47-137 (457)
120 3cvr_A Invasion plasmid antige 98.9 9.1E-10 3.1E-14 92.4 6.3 68 2-81 126-193 (571)
121 4fmz_A Internalin; leucine ric 98.9 3.4E-09 1.2E-13 83.0 8.8 93 2-101 50-142 (347)
122 3goz_A Leucine-rich repeat-con 98.9 3.2E-10 1.1E-14 89.8 3.0 83 2-84 4-96 (362)
123 3cvr_A Invasion plasmid antige 98.9 3.1E-09 1.1E-13 89.1 8.8 53 43-102 139-191 (571)
124 3goz_A Leucine-rich repeat-con 98.9 2.9E-10 1E-14 90.0 1.2 103 1-103 27-150 (362)
125 3bz5_A Internalin-J, INLJ; leu 98.9 8.3E-09 2.8E-13 84.3 9.4 90 1-101 69-158 (457)
126 2ast_B S-phase kinase-associat 98.8 2.6E-10 8.8E-15 89.0 -1.5 77 2-78 99-178 (336)
127 2ca6_A RAN GTPase-activating p 98.8 4.8E-10 1.7E-14 89.4 -0.2 105 1-105 192-317 (386)
128 1jl5_A Outer protein YOPM; leu 98.8 1.5E-08 5.3E-13 82.7 8.5 74 1-82 136-209 (454)
129 1jl5_A Outer protein YOPM; leu 98.8 1.4E-09 4.7E-14 88.9 2.1 77 1-82 16-105 (454)
130 4ay9_X Follicle-stimulating ho 98.8 4.8E-09 1.6E-13 82.7 5.0 99 2-103 15-116 (350)
131 2ast_B S-phase kinase-associat 98.8 6.6E-10 2.3E-14 86.6 0.0 100 1-101 75-178 (336)
132 3g06_A SSPH2 (leucine-rich rep 98.7 2E-08 6.9E-13 85.1 7.6 76 20-104 221-297 (622)
133 3g06_A SSPH2 (leucine-rich rep 98.7 1.2E-08 4.2E-13 86.4 6.1 77 1-86 226-302 (622)
134 2ca6_A RAN GTPase-activating p 98.7 2.2E-09 7.6E-14 85.5 0.6 85 1-85 221-320 (386)
135 3rw6_A Nuclear RNA export fact 98.7 4.4E-09 1.5E-13 80.1 2.1 67 17-85 167-237 (267)
136 3rw6_A Nuclear RNA export fact 98.6 2.9E-08 9.8E-13 75.6 4.3 73 1-75 175-258 (267)
137 3sb4_A Hypothetical leucine ri 98.5 1.2E-07 3.9E-12 74.1 5.3 78 2-81 232-310 (329)
138 1z7x_W Ribonuclease inhibitor; 98.5 2.6E-08 8.8E-13 80.8 0.6 103 1-103 289-410 (461)
139 1z7x_W Ribonuclease inhibitor; 98.4 5.9E-09 2E-13 84.6 -3.6 64 18-81 254-326 (461)
140 3un9_A NLR family member X1; l 98.3 1.7E-07 6E-12 74.6 0.9 103 1-103 131-251 (372)
141 3un9_A NLR family member X1; l 98.2 6.4E-08 2.2E-12 77.1 -2.1 102 1-102 106-222 (372)
142 3rfe_A Platelet glycoprotein I 97.9 1.8E-05 6E-10 53.6 4.8 60 23-84 11-71 (130)
143 1io0_A Tropomodulin; LRR prote 97.8 3.3E-06 1.1E-10 60.6 0.8 81 1-81 41-136 (185)
144 3ogk_B Coronatine-insensitive 97.8 2.8E-06 9.4E-11 70.9 0.2 87 16-102 432-524 (592)
145 3sb4_A Hypothetical leucine ri 97.8 2.9E-05 1E-09 60.3 6.0 82 19-102 225-308 (329)
146 1io0_A Tropomodulin; LRR prote 97.8 5E-06 1.7E-10 59.6 1.4 89 14-102 30-134 (185)
147 3rfe_A Platelet glycoprotein I 97.8 5.3E-05 1.8E-09 51.2 6.5 54 2-57 14-68 (130)
148 3ogk_B Coronatine-insensitive 97.7 7.4E-06 2.5E-10 68.3 1.3 63 18-80 162-232 (592)
149 4fdw_A Leucine rich hypothetic 97.5 0.00017 5.7E-09 57.9 6.6 94 6-101 257-355 (401)
150 2p1m_B Transport inhibitor res 97.4 9.9E-06 3.4E-10 67.5 -1.8 87 16-103 428-518 (594)
151 3e4g_A ATP synthase subunit S, 97.4 3.8E-05 1.3E-09 54.7 1.5 60 20-79 61-125 (176)
152 2p1m_B Transport inhibitor res 97.3 5.6E-05 1.9E-09 62.9 0.9 56 2-57 111-169 (594)
153 4fdw_A Leucine rich hypothetic 97.1 0.00071 2.4E-08 54.2 5.5 69 10-81 290-358 (401)
154 2ra8_A Uncharacterized protein 96.9 0.0002 6.8E-09 56.7 0.4 85 18-102 217-318 (362)
155 2ra8_A Uncharacterized protein 96.6 0.00033 1.1E-08 55.5 -0.0 84 19-102 192-290 (362)
156 4fs7_A Uncharacterized protein 96.1 0.0054 1.8E-07 48.6 4.5 62 15-78 292-353 (394)
157 4gt6_A Cell surface protein; l 95.9 0.014 4.9E-07 46.2 6.0 85 13-101 281-367 (394)
158 3e4g_A ATP synthase subunit S, 95.8 0.0042 1.4E-07 44.1 2.4 78 1-78 66-149 (176)
159 4h09_A Hypothetical leucine ri 95.7 0.0093 3.2E-07 46.9 4.2 70 8-78 251-320 (379)
160 2ks1_B Epidermal growth factor 95.1 0.01 3.5E-07 31.8 1.7 15 138-152 13-27 (44)
161 2l2t_A Receptor tyrosine-prote 95.0 0.015 5.1E-07 31.1 2.3 16 138-153 12-27 (44)
162 4gt6_A Cell surface protein; l 95.0 0.051 1.7E-06 42.9 6.4 64 13-78 258-321 (394)
163 4h09_A Hypothetical leucine ri 94.9 0.06 2.1E-06 42.1 6.5 86 11-98 231-317 (379)
164 1pgv_A TMD-1, tropomodulin TMD 94.8 0.011 3.7E-07 42.7 1.7 65 17-81 38-111 (197)
165 4fs7_A Uncharacterized protein 94.3 0.063 2.2E-06 42.4 5.4 61 13-77 269-329 (394)
166 1pgv_A TMD-1, tropomodulin TMD 94.3 0.029 9.8E-07 40.4 3.0 65 14-78 64-136 (197)
167 2klu_A T-cell surface glycopro 92.8 0.07 2.4E-06 30.9 2.3 12 139-150 13-24 (70)
168 2k9y_A Ephrin type-A receptor 80.8 1.4 4.8E-05 22.8 2.6 11 138-148 15-25 (41)
169 2l8s_A Integrin alpha-1; trans 75.6 2.3 7.9E-05 23.6 2.5 23 135-157 9-31 (54)
170 2knc_A Integrin alpha-IIB; tra 74.2 2.7 9.3E-05 23.3 2.6 23 135-157 12-34 (54)
171 2k1a_A Integrin alpha-IIB; sin 71.8 3 0.0001 21.9 2.2 23 135-157 10-32 (42)
172 2lz0_A Uncharacterized protein 70.5 10 0.00034 23.7 5.0 45 7-52 7-51 (100)
173 2lz0_A Uncharacterized protein 60.0 11 0.00039 23.4 3.8 47 30-77 6-52 (100)
174 2knc_B Integrin beta-3; transm 53.1 5 0.00017 24.1 1.1 10 138-147 13-22 (79)
175 2k9j_B Integrin beta-3; transm 34.8 31 0.0011 17.9 2.3 7 139-145 13-19 (43)
176 4ev6_A Magnesium transport pro 32.4 18 0.00061 27.8 1.6 7 157-163 332-338 (339)
177 3arc_J Photosystem II reaction 29.7 43 0.0015 17.0 2.2 20 137-156 10-29 (40)
178 2l9u_A Receptor tyrosine-prote 29.4 37 0.0013 16.7 1.9 6 155-160 26-31 (40)
179 2zxe_G FXYD10, phospholemman-l 20.5 77 0.0026 18.6 2.4 16 142-157 24-39 (74)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=8.4e-21 Score=164.23 Aligned_cols=116 Identities=45% Similarity=0.702 Sum_probs=110.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|||++|+++|.+|..+++++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|+.+|+++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSE 117 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C~~~~ 117 (185)
+|.+|...++.++....+.|||.+|+.|.. .|....
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999999999999999876 886554
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=8.6e-19 Score=153.04 Aligned_cols=105 Identities=29% Similarity=0.330 Sum_probs=87.9
Q ss_pred CEecCCcCC-----CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEe
Q 039243 1 IILLDNNFV-----GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV 75 (185)
Q Consensus 1 L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l 75 (185)
|+|++|.++ +..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..+. ++|+.|++
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L 533 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI 533 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence 466777765 34456688889999999999999988889999999999999999999976666554 78999999
Q ss_pred cCCcCcCCCCCCCcccccccccccCCCCCCCCCC
Q 039243 76 SHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 76 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 109 (185)
++|++++..|.. +..+..+.+.+||+.|+|+.
T Consensus 534 s~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 534 SRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 999999888865 45788899999999998753
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=124.63 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=80.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|.+
T Consensus 62 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred EECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 46677777776666777777777777777777766677777777888888888888776677777777888888888888
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..|..+ .+.++..+.+.+|++.|+|+
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77666544 46667777788888887664
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=120.80 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=95.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|+++ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|+|++..|..|..+++|+.|++++|.+
T Consensus 36 L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 578899998 6778999999999999999999988888999999999999999999988888899999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
+...+..+ .+..+..+.+.+||+.|+|.
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 115 SVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 96665443 57788999999999999874
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.2e-17 Score=121.64 Aligned_cols=109 Identities=23% Similarity=0.322 Sum_probs=97.5
Q ss_pred CEecCCcCCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|++++..+. .|..+++|+.|+|++|.|++..|..|..+++|++|++++|+|++..|..|..+++|+.|++++|.
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 57889999877765 48899999999999999998889999999999999999999998888889999999999999999
Q ss_pred CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
+++..|... .+.++..+.+.+|++.|+|+.
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 998888755 577889999999999998753
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=2e-17 Score=123.06 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=74.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|+.|.++++|+.|+|++|.|+...+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus 61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp EECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 45666777766666777777777777777777755555566777777777777777766666777777777777777777
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+..+ .+.++..+.+.+|++.|+|.
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 76555433 35667777778888777654
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=2.8e-17 Score=128.32 Aligned_cols=111 Identities=33% Similarity=0.515 Sum_probs=100.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..|..|..+++|+.|+|++|.+++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|.+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 57888999888899999999999999999999966666 88899999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKC 113 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C 113 (185)
+|.+|....+..+..+.+.+|+++|+.|.. .|
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999888899999999999999997764 45
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=2.3e-16 Score=117.91 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=55.4
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+....+..|..+++|+.|+|++|.|++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 34444444433344444555555555555555444444455555555555555555 44555555556666666666655
Q ss_pred CCCCCCC-cccccccccccCCCCCCCCC
Q 039243 82 GAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 82 ~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
+..+... .+.++..+.+.+||+.|.|+
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 4433322 34556666666676666553
No 9
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=2.6e-16 Score=112.52 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=91.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
+++++|.++. +|..+. ++|+.|+|++|.|++..|..|..+++|++|++++|+|++..+..|..+++|+.|++++|.+
T Consensus 14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4788999885 565553 8899999999999988899999999999999999999977777788999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+..+ .+.++..+.+.+|++.|.|+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 97766543 67889999999999999874
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=2.7e-16 Score=112.85 Aligned_cols=108 Identities=23% Similarity=0.285 Sum_probs=90.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 57888999887777788999999999999999977777788999999999999999977667788899999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+... .+.++..+.+.+|++.|.++
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 86655543 46788888999999888654
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=1.2e-16 Score=134.30 Aligned_cols=108 Identities=26% Similarity=0.317 Sum_probs=96.1
Q ss_pred CEecCCcC-CCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNF-VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|++ .+..|+.|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|+
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 46777764 44577889999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CcCCCCCCCc-c-cccccccccCCCCCCCCC
Q 039243 80 LRGAIPQGTQ-F-STFANDWFAGNPGLCGEP 108 (185)
Q Consensus 80 l~~~~p~~~~-~-~~l~~~~~~~n~~~c~~~ 108 (185)
+++..|.... + .++..+.+++||+.|+|.
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9988887653 3 578899999999999985
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=5.5e-16 Score=119.85 Aligned_cols=108 Identities=24% Similarity=0.218 Sum_probs=80.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|.+
T Consensus 105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 46777777776667777777888888888888766666677778888888888888755555567777888888888888
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
+...+.......+..+.+.+||+.|+|.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CccChhhcccccCCeEEeCCCCccCcCc
Confidence 7444344455667888899999999774
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=6.8e-16 Score=110.84 Aligned_cols=105 Identities=24% Similarity=0.342 Sum_probs=90.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
+++++|.+. .+|..+. ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.+
T Consensus 17 l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 467888886 5666554 8999999999999988899999999999999999999976666678999999999999999
Q ss_pred cCCCCCC-CcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+.. ..+.++..+.+.+|++.|.|.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9766653 357889999999999998764
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.7e-15 Score=114.52 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=49.5
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++
T Consensus 65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 45555555555555555555555555555555444444555555555555555555433333444555555555555554
Q ss_pred CCCCCCC-cccccccccccCC
Q 039243 82 GAIPQGT-QFSTFANDWFAGN 101 (185)
Q Consensus 82 ~~~p~~~-~~~~l~~~~~~~n 101 (185)
+..+..+ .+.++..+++.+|
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHcCcCcCCCEEECCCC
Confidence 3333221 2334444444444
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.9e-15 Score=110.96 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=52.4
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 58 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 34445444444444444555555555555555444444455555555555555555443334455555555555555555
Q ss_pred CCCCCC-CcccccccccccCCCCCCCC
Q 039243 82 GAIPQG-TQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 82 ~~~p~~-~~~~~l~~~~~~~n~~~c~~ 107 (185)
+..+.. ..+.++..+.+.+|++.|.+
T Consensus 138 ~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 138 SVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred eeCHHHhccCCCccEEEecCCCeecCC
Confidence 433332 23445555555666555544
No 16
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.62 E-value=1.1e-15 Score=120.45 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=93.1
Q ss_pred EecCC-cCCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 2 ILLDN-NFVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 2 ~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
+++++ ++++ +|. +..+++|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|..+++|+.|+|++|.
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 56676 7775 777 99999999999996 99998888999999999999999999999888999999999999999999
Q ss_pred CcCCCCCCCcccccccccccCCCCCCCCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
|++..+..+....+..+.+.+|++.|+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred cceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99777666655558899999999999874
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.7e-15 Score=114.67 Aligned_cols=106 Identities=25% Similarity=0.330 Sum_probs=52.7
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 44445554444444445555555555555555444444445555555555555555444444445555555555555555
Q ss_pred CCCCCC-CcccccccccccCCCCCCCC
Q 039243 82 GAIPQG-TQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 82 ~~~p~~-~~~~~l~~~~~~~n~~~c~~ 107 (185)
+..|.. ..+.++..+.+.+|++.|.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccC
Confidence 444432 23445555555555555544
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-15 Score=114.03 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=66.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 45556666555555666666666666666666544455666666666666666666555555666666777777777666
Q ss_pred CCCCCCC-cccccccccccCCCCCCCCC
Q 039243 82 GAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 82 ~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
+..+... .+..+..+.+.+||+.|+|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 4444322 35566667777777777653
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=3.5e-16 Score=113.90 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=89.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|++++..|..+..+++|+.+++++|.+
T Consensus 59 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 58999999999999999999999999999999988888899999999999999999988899999999999999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
.+..+-......+....+.++...|..|
T Consensus 139 ~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 139 NCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred cCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9876632211112222344454555543
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=3.5e-15 Score=121.33 Aligned_cols=108 Identities=26% Similarity=0.308 Sum_probs=83.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|.+
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 46677777777777777778888888888888777777777888888888888888766677788888888888888888
Q ss_pred cCCCCCC-CcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+.. ..+..+..+.+.+|++.|.|+
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7655544 356777888888888888876
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=7.4e-15 Score=109.12 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=90.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..+..|..+++|+.|+|++|.|++..|..|..+++|++|++++|+|+...+..|..+++|+.|++++|.+
T Consensus 37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence 57889999988888899999999999999999988899999999999999999999966666678899999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
++..|..+ .+.++..+.+.+|...
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCC
Confidence 98777654 5678888888888643
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=7.4e-15 Score=104.95 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=79.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+|++..+..|..+++|+.|++++|++
T Consensus 35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 58999999999999999999999999999999988888889999999999999999977777899999999999999999
Q ss_pred cCCCCC
Q 039243 81 RGAIPQ 86 (185)
Q Consensus 81 ~~~~p~ 86 (185)
.+..+.
T Consensus 115 ~c~c~~ 120 (170)
T 3g39_A 115 DCACSD 120 (170)
T ss_dssp CTTBGG
T ss_pred CCCchh
Confidence 977653
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=1.5e-14 Score=107.97 Aligned_cols=103 Identities=25% Similarity=0.285 Sum_probs=89.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|..|..+++|+.|+|++|.|+...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus 45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 57899999999899999999999999999999877777789999999999999999977777788999999999999999
Q ss_pred cCCCCCC-CcccccccccccCCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~~ 104 (185)
+ .+|.. ..+.++..+.+.+|...
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred c-ccCcccccCCCCCEEECCCCcCC
Confidence 9 45544 46778888889888644
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=5e-15 Score=113.68 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=57.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 35566666666566666666666666666666655555566666666666666666644444455566666666666666
Q ss_pred cCCCCCCC-cccccccccccCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n 101 (185)
.+..|... .+..+..+.+.+|
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSS
T ss_pred cccCHhHccCcccccEeeCCCC
Confidence 55544332 2344444444444
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=1.1e-14 Score=122.20 Aligned_cols=103 Identities=19% Similarity=0.085 Sum_probs=88.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|||++|+|++..+..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+|++..++.|.++++|++|++++|.+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 68999999988888999999999999999999988888899999999999999999976667889999999999999999
Q ss_pred cCCCCCC-CcccccccccccCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
++..+.. ..+.++..+.+.+|..
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCChhhhhcCcccCeeccccCcc
Confidence 8766543 3567777888877754
No 26
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=106.59 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=90.6
Q ss_pred CEecCCcCCCCCc-hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|++++..| ..|..+++|+.|+|++|.|++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 5788999987755 458899999999999999998888899999999999999999998888889999999999999999
Q ss_pred CcCCCCCCC-cccccccccccCCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
+++..|..+ .+.++..+.+.+|...
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCeECHhHcCCCccCCEEECCCCcCC
Confidence 998877654 5677888888888654
No 27
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=2.1e-14 Score=102.98 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=77.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|+|++..+..|..+++|+.+++++|.+
T Consensus 38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred EEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence 58999999999999999999999999999999977777789999999999999999966666699999999999999999
Q ss_pred cCCCC
Q 039243 81 RGAIP 85 (185)
Q Consensus 81 ~~~~p 85 (185)
.+..+
T Consensus 118 ~c~~~ 122 (174)
T 2r9u_A 118 DCECR 122 (174)
T ss_dssp CTTBG
T ss_pred ccccc
Confidence 86554
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=1e-14 Score=122.55 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=87.4
Q ss_pred CEecCCcCCC-CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVG-EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 4677777776 367778888888888888888888888888888899999999999988778888888899999999999
Q ss_pred CcCCCCCCC-ccc-ccccccccCCCCCCCCCC
Q 039243 80 LRGAIPQGT-QFS-TFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 80 l~~~~p~~~-~~~-~l~~~~~~~n~~~c~~~~ 109 (185)
++. +|... .+. .+..+.+.+||+.|+|+.
T Consensus 533 l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 533 IET-SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred Ccc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 884 44433 344 488889999999998864
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=2e-14 Score=117.16 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=92.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++. | .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus 201 L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 201 LNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 46788888754 3 477888999999999999988899999999999999999999988888999999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
++..+..+ .+.++..+.+.+||+.|+|..
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 96666543 477888999999999999864
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=6.4e-14 Score=105.79 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=73.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 46777777777777777777777777777777777777777777777777777777766666677777777777777777
Q ss_pred cCCCCCC-CcccccccccccCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
++..+.. ..+..+..+.+++|..
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcChhHhccCCcccEEECcCCcC
Confidence 7555543 2456667777776643
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=116.25 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=91.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|+++. +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus 190 L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 4677787774 34 477888899999999999988899999999999999999999988888899999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
++..+..+ .+..+..+.+.+||+.|+|..
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 97666543 577889999999999999853
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=1.3e-14 Score=125.50 Aligned_cols=103 Identities=25% Similarity=0.444 Sum_probs=94.5
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+++.|.+.|.+|..+..+++|+.|||++|+++|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.||+++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 34568888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-cccccccccccCCCCC
Q 039243 82 GAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 82 ~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
|.+|... .+..+..+++++|+..
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcCChHHhCCCCCCEEECcCCccc
Confidence 9999765 5677888899988654
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1.8e-14 Score=111.53 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=64.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccC-CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG-YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 3566676666666666666777777777777664 456666666677777777776665556666666666666666666
Q ss_pred CcCCCCCC-CcccccccccccCCCC
Q 039243 80 LRGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
+++..+.. ..+.++..+++++|..
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred cCccChhhccCcccCCEeECCCCCC
Confidence 66444322 2345555666666644
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=101.49 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=89.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC
Confidence 57899999988888889999999999999999977777789999999999999999976666788999999999999999
Q ss_pred cCCCCCC-CcccccccccccCCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~~ 104 (185)
++..+.. ..+.++..+.+.+|...
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 113 QSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccCHhHhccCCcCCEEECCCCccc
Confidence 9766654 35778888888888644
No 35
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=4.4e-14 Score=98.35 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=86.7
Q ss_pred CEecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.+++++|.
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence 578999998 78888889999999999999999966 778999999999999999997789988889999999999999
Q ss_pred CcCCC--CCCCcccccccccccCCCC
Q 039243 80 LRGAI--PQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~--p~~~~~~~l~~~~~~~n~~ 103 (185)
+++.. +....++.+..+.+.+|+.
T Consensus 100 i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 100 IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 98642 3334567788888888853
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=4.7e-14 Score=117.51 Aligned_cols=109 Identities=20% Similarity=0.361 Sum_probs=93.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 467888888888888888999999999999987 5788889999999999999999997778889999999999999999
Q ss_pred CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL 109 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~ 109 (185)
+++..|... .++.+..+.+.+|++.|.|+.
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 997776643 577888899999999987754
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=1.9e-14 Score=112.17 Aligned_cols=102 Identities=31% Similarity=0.486 Sum_probs=57.4
Q ss_pred CEecCCcCCC--CCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 1 IILLDNNFVG--EIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
|+|++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 3455666665 5555666666666666663 555555565566666666666666666555555555555566666666
Q ss_pred CcCcCCCCCCC-cccccccccccCCC
Q 039243 78 NHLRGAIPQGT-QFSTFANDWFAGNP 102 (185)
Q Consensus 78 N~l~~~~p~~~-~~~~l~~~~~~~n~ 102 (185)
|.+.+.+|... .+.++..+.+.+|.
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred CccCCcCChHHhcCCCCCeEECcCCc
Confidence 65555554432 34444555555443
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=116.44 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=96.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 47888999876667899999999999999999988888899999999999999999988899999999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
++..+..+ .+.++..+.+.+||+.|+|.
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 97655443 56788999999999999874
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=7.1e-14 Score=99.21 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=85.9
Q ss_pred CEecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|++++|.
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc
Confidence 578899998 77888889999999999999999965 778999999999999999997788888889999999999999
Q ss_pred CcCCC--CCCCcccccccccccCCCC
Q 039243 80 LRGAI--PQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~--p~~~~~~~l~~~~~~~n~~ 103 (185)
+++.. +....+..+..+.+.+|+.
T Consensus 107 l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 107 LKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp CCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred cCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 98643 2334567788888888864
No 40
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=104.74 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=78.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|.++++|+.|+|++|.|++..|..|..+++|+.|++++|+++...+..|..+++|+.+++++|.+
T Consensus 59 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 58999999999899999999999999999999988888999999999999999999966666788999999999999999
Q ss_pred cCCCC
Q 039243 81 RGAIP 85 (185)
Q Consensus 81 ~~~~p 85 (185)
.+...
T Consensus 139 ~C~c~ 143 (193)
T 2wfh_A 139 YCDCN 143 (193)
T ss_dssp ECSGG
T ss_pred ecCCc
Confidence 86543
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=2.6e-13 Score=103.67 Aligned_cols=101 Identities=23% Similarity=0.240 Sum_probs=55.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 45555555555555555555666666666555555555555555666666666555444444555555666666666555
Q ss_pred CCCCCC-CcccccccccccCCC
Q 039243 82 GAIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 82 ~~~p~~-~~~~~l~~~~~~~n~ 102 (185)
+..+.. ..+..+..+.+.+|.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCCccCCEEECCCCc
Confidence 444433 234455555555554
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=7.7e-14 Score=110.79 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=42.7
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|++++|.++
T Consensus 70 ~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 44555555544455555555555555555555444444555555555555555555444455555555555555555554
No 43
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=109.82 Aligned_cols=104 Identities=21% Similarity=0.181 Sum_probs=90.4
Q ss_pred CEecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|++++..+..|. .+++|+.|+|++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 58899999988888887 89999999999999998888889999999999999999997777789999999999999999
Q ss_pred CcCCCCCCC-cccccccccccCCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
+.+..|..+ .+..+..+.+++|...
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCC
Confidence 997766554 5677888888888543
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=9.6e-14 Score=118.20 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=54.3
Q ss_pred cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC--cccccc
Q 039243 17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFA 94 (185)
Q Consensus 17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~l~ 94 (185)
..+++|+.|+|++|.++...+..|.++++|+.|++++|++++..+..|..+++|+.+++++|.+++..|... .+..+.
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 334444444444444442223345555666666666666664444445556666666666666665444322 356778
Q ss_pred cccccCCCCCCCCCC
Q 039243 95 NDWFAGNPGLCGEPL 109 (185)
Q Consensus 95 ~~~~~~n~~~c~~~~ 109 (185)
.+.+.+||+.|+|+.
T Consensus 613 ~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 613 ELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTCCCCBCCCC
T ss_pred EEEccCCCcccCCcc
Confidence 888999999999864
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=4e-13 Score=105.38 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred CEecCCcCCCCCchhccC---------CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc
Q 039243 1 IILLDNNFVGEIPTSIAS---------LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 71 (185)
|+|++|++.+.+|..+.. +++|+.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 456666666666665543 677777777777777 66666777777777777777777 3555666777777
Q ss_pred EEEecCCcCcCCCCCCC-cccccccccccCCCCC
Q 039243 72 FFDVSHNHLRGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 72 ~l~l~~N~l~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
.|++++|.+.+.+|... .+.++..+.+.+|...
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 77777777666666543 4556666666666543
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=7.5e-14 Score=117.31 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=66.1
Q ss_pred EecCCcCCCC---CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 2 ILLDNNFVGE---IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 2 ~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
++++|.+.+. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .+++++|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 4455555441 12345555566666666666665556666666666666776666666666666666666 6777777
Q ss_pred cCcCCCCCCC-cccccccccccCCCCCCCCC
Q 039243 79 HLRGAIPQGT-QFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 79 ~l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~ 108 (185)
.+++..|... .+..+..+.+.+||+.|+|+
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 7665555432 35566777788888888664
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=6.2e-13 Score=102.64 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=77.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+. .+|..+..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 467777776 5566777788888888888888866677788888888888888888866666677788888888888888
Q ss_pred cCCCCCCC-cccccccccccCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
++..+..+ .+..+..+.+.+|...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC
Confidence 85544432 4667777778777654
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=9.6e-13 Score=100.32 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=64.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 45667777665555566677777777777777755555666677777777777777655555566666667777766666
Q ss_pred cCCCCCC-CcccccccccccCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~ 102 (185)
++..+.. ..+.++..+.+.+|.
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCcccceeEecCCc
Confidence 6444332 234555555555553
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=2.8e-13 Score=96.11 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=84.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.
T Consensus 54 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 54 LSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred EeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 57899999876 77899999999999999999878888888999999999999999532 2788899999999999999
Q ss_pred CcCCCC----CCCcccccccccccCCCC
Q 039243 80 LRGAIP----QGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~p----~~~~~~~l~~~~~~~n~~ 103 (185)
+++..+ ....++.+..+.+.+|..
T Consensus 132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 132 VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 996655 233567777777777753
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.41 E-value=9e-13 Score=103.22 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=60.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 355666666655566666666666666666666555556666666666666666666 5566666666666666666666
Q ss_pred cCCCCCCCc-------ccccccccccCCCCC
Q 039243 81 RGAIPQGTQ-------FSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~~-------~~~l~~~~~~~n~~~ 104 (185)
++..+..+. ...+..+.+.+||..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccChhHccccccccccccccceEeecCccc
Confidence 644333221 233445556666554
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=3.5e-13 Score=96.42 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=76.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 57899999988888889999999999999999987778889999999999999999966666678899999999999999
Q ss_pred cCCCC
Q 039243 81 RGAIP 85 (185)
Q Consensus 81 ~~~~p 85 (185)
.+..|
T Consensus 137 ~~~~~ 141 (177)
T 2o6r_A 137 DCSCP 141 (177)
T ss_dssp CCCHH
T ss_pred eccCc
Confidence 98766
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=4.5e-13 Score=97.61 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=73.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc-
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH- 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~- 79 (185)
|++++|.++. ++.+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 71 L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 71 LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp EEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred EEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence 4677775543 3467778888888888888887677778888888888888888886677778888888888888887
Q ss_pred CcCCCCCCCcccccccccccCCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
+. .+|....++++..+.+.+|.
T Consensus 149 i~-~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 149 IT-DIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CC-CCGGGGGCSSCCEEECTTBC
T ss_pred cc-ccHhhcCCCCCCEEECCCCC
Confidence 54 45544456667777777764
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.40 E-value=5.4e-13 Score=111.47 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=62.5
Q ss_pred EecCCcCCCC--CchhccCCcccceeecccccccCCCcc-cccCC----------------------CCCCEEeCCCCcC
Q 039243 2 ILLDNNFVGE--IPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNL----------------------TVIESLDLSSNKL 56 (185)
Q Consensus 2 ~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l----------------------~~L~~L~l~~N~l 56 (185)
+|++|.+++. .|..+..+++|+.|++++|.+++.+|. .+..+ ++|+.|++++|++
T Consensus 383 ~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462 (562)
T ss_dssp ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCC
T ss_pred ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcC
Confidence 4555555542 234455555566666666555542332 23333 4666666666666
Q ss_pred CCCCchHhhcCCCCcEEEecCCcCcCCCCC-CCcccccccccccCCCCCCCCC
Q 039243 57 TGQIPQQLAELTSLAFFDVSHNHLRGAIPQ-GTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 57 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
+ .+|..+..+++|+.|++++|+++...+. ...+..+..+.+.+||+.|+|+
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred c-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6 5566555777777777777777743333 2345667777777887777653
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.40 E-value=7.4e-13 Score=101.53 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=84.9
Q ss_pred CEecCCc-CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNN-FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|. +....|..|..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 5788887 777668888899999999999999998878888999999999999999996666678888999999999999
Q ss_pred CcCCCCCC-CcccccccccccCCCC
Q 039243 80 LRGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
+++..+.. ..+..+..+.+.+|..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCHHHhcCccccCEEECCCCcc
Confidence 88665543 3567788888888754
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=4.7e-13 Score=108.72 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=94.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 47889999999999999999999999999999988899999999999999999999988889999999999999999999
Q ss_pred cCCCCCCC-cccccccccccCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
++..|... .+..+..+.+.+|...
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccChhhccccccccEEECCCCccc
Confidence 98877654 5788889999998654
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.40 E-value=8e-13 Score=103.69 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=89.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 188 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp EEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred EECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 578889888 77888999999999999999999 4666789999999999999999989999999999999999999988
Q ss_pred cCCCCCCC-cccccccccccCCCCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~ 107 (185)
.+.+|... .+.++..+++.+|+..-..
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 88888654 5677888889888765443
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=8.2e-13 Score=103.30 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=51.8
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
++++|.++. +|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 455555553 333222 55556666666665555555555666666666666665444445555556666666666555
Q ss_pred CCCCC-CCcccccccccccCCCC
Q 039243 82 GAIPQ-GTQFSTFANDWFAGNPG 103 (185)
Q Consensus 82 ~~~p~-~~~~~~l~~~~~~~n~~ 103 (185)
.+|. ...+..+..+.+.+|+.
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCC
T ss_pred -cCChhhccCCCcCEEECCCCcC
Confidence 3332 22344555555555543
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=7.7e-13 Score=100.98 Aligned_cols=102 Identities=20% Similarity=0.101 Sum_probs=70.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|++++..+..|.++++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 46777777766666777777777777777777766666777777777777777777766666677777777777777777
Q ss_pred cCCCCCC-CcccccccccccCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~ 102 (185)
.+..+.. ..+..+..+.+.+|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSC
T ss_pred cccCchhcccCCCCCEEECcCCc
Confidence 6554422 244556666666554
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=3.7e-13 Score=102.78 Aligned_cols=108 Identities=29% Similarity=0.446 Sum_probs=74.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCC-----------
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT----------- 68 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~----------- 68 (185)
|++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|++|++++|++++..+..+..+.
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 46778888877666788888888888888888753 577888888888888888888765555554433
Q ss_pred ----------------CCcEEEecCCcCcCCCCCC-CcccccccccccCCCCCCCCC
Q 039243 69 ----------------SLAFFDVSHNHLRGAIPQG-TQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 69 ----------------~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 108 (185)
+|+.|++++|.+++..+.. ..+.++..+.+.+|++.|+|+
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 4555666666666444333 235566677777777777664
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=5.6e-13 Score=111.86 Aligned_cols=99 Identities=24% Similarity=0.287 Sum_probs=87.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|++++|.+
T Consensus 446 L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 446 LHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp EECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred EEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCC
Confidence 5789999997 565 999999999999999999 889999999999999999999995 67 789999999999999999
Q ss_pred cCCC-CCC-CcccccccccccCCCCC
Q 039243 81 RGAI-PQG-TQFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~-p~~-~~~~~l~~~~~~~n~~~ 104 (185)
++.. |.. ..+..+..+.+++|+..
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 9875 654 36788899999999753
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=107.96 Aligned_cols=104 Identities=29% Similarity=0.388 Sum_probs=62.6
Q ss_pred EecCCcCCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 2 ILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 2 ~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
++++|.+++.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 4445555443333 244445555555555555444444332 56777777777777 6666666777888888888887
Q ss_pred cCCCCC-CCcccccccccccCCCCCCCCC
Q 039243 81 RGAIPQ-GTQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 81 ~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 108 (185)
+...+. ...+..+..+.+.+|++.|+|+
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHhccCCcccEEECcCCCCcccCC
Confidence 743332 2345667777788888877653
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=7e-13 Score=108.06 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=78.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|+.|.++++|+.|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 57888999988888899999999999999999988888899999999999999999866666788888999999999988
Q ss_pred cCCCCCCC-cccccccccccC
Q 039243 81 RGAIPQGT-QFSTFANDWFAG 100 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~ 100 (185)
....+..+ .+.++..+.+.+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCC
T ss_pred ceeCHhHHhcCCcccEEeCCC
Confidence 75544322 334444444443
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=8.9e-13 Score=110.78 Aligned_cols=103 Identities=22% Similarity=0.104 Sum_probs=73.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 46777777777777777777777777777777766677777777777777777777766677777777777777777777
Q ss_pred cCCCCCC-CcccccccccccCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
.+..+.. ..+.+++.+.+.+|..
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCC
T ss_pred ccccccccCCCCCCCEEeCCCCcc
Confidence 6555333 2455566666666643
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=8.7e-13 Score=109.53 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=88.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 57899999988889999999999999999999988889999999999999999999987777799999999999999999
Q ss_pred cCC-CCC-CCcccccccccccCCC
Q 039243 81 RGA-IPQ-GTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~-~p~-~~~~~~l~~~~~~~n~ 102 (185)
++. .|. ...+..+..+.+.+|.
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cccchhhhhhccCCccEEECCCCc
Confidence 853 333 3456677777777775
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=8.5e-13 Score=108.04 Aligned_cols=101 Identities=22% Similarity=0.184 Sum_probs=62.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|++|++++|+++...+..|..+++|+.|++++|.+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 45667777766666677777777777777777766666677777777777777776644444556666666666666666
Q ss_pred cCCCCCCC-cccccccccccCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n 101 (185)
.+..|..+ .+.++..+.+.+|
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCT
T ss_pred ccCChhHccccccCCEEECCCC
Confidence 65544332 2344444444444
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=1.9e-12 Score=109.87 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=61.5
Q ss_pred CEecCCcCCCCCchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeC------CCCcCCCCCchHhhcCCCCcE
Q 039243 1 IILLDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDL------SSNKLTGQIPQQLAELTSLAF 72 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~ 72 (185)
|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 355666666 4555554 66666666666666664 5666666666666666 345556666666666666666
Q ss_pred EEecCCcCcCCCCCCCcccccccccccCCCCCC
Q 039243 73 FDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLC 105 (185)
Q Consensus 73 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 105 (185)
|++++|.+ +.+|.... +.+..+++++|+..|
T Consensus 571 L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 571 LQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp EECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred EECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 66666666 35554432 556666666666555
No 67
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.1e-12 Score=112.91 Aligned_cols=100 Identities=27% Similarity=0.373 Sum_probs=79.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus 229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 577888887 56666668888888888888888 78888888888888888888888 7788888888888888888888
Q ss_pred cCCCCCC-CcccccccccccCCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~~ 104 (185)
+ .+|.. ..+.++..+.+++|+..
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred C-ccChhhhcCCCccEEeCCCCccC
Confidence 7 45543 35677778888888754
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=103.28 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=84.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|++++..++.|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 57889999987777899999999999999999988888899999999999999999965555588899999999999999
Q ss_pred cCCCC-C-CCcccccccccccCCC
Q 039243 81 RGAIP-Q-GTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p-~-~~~~~~l~~~~~~~n~ 102 (185)
++..+ . ...+.++..+.+.+|.
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cccCchhhhccCCCCcEEECCCCc
Confidence 85443 1 2356777778887774
No 69
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=6.9e-13 Score=104.43 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=74.8
Q ss_pred CEecC-CcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLD-NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++ |.+.+..++.|.++++|+.|+|++|+|++..|..|..|++|+.|+|++|+|++..+..+..++ |+.|++.+|.
T Consensus 36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence 57886 999998889999999999999999999999999999999999999999999966666666555 9999999999
Q ss_pred CcCCCC
Q 039243 80 LRGAIP 85 (185)
Q Consensus 80 l~~~~p 85 (185)
+.+...
T Consensus 115 ~~c~c~ 120 (347)
T 2ifg_A 115 LHCSCA 120 (347)
T ss_dssp CCCCGG
T ss_pred ccCCCc
Confidence 986543
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=1.7e-12 Score=109.30 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=77.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|+.+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 46778888877777788888888888888888877777778888888888888888855555567788888888888888
Q ss_pred cCCCCCCC-cccccccccccCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~ 103 (185)
.+..|..+ .+.++..+.+.+|..
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCChhhhhcCCcCcEEECcCCCC
Confidence 77666543 456667777766643
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=3.8e-13 Score=96.28 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=79.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|+++.. |......++|+.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 24 L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 24 LDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp EECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred EEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 57889999854 54333334999999999999965 6789999999999999999965556668999999999999999
Q ss_pred cCCCCC---CCcccccccccccCCCCCC
Q 039243 81 RGAIPQ---GTQFSTFANDWFAGNPGLC 105 (185)
Q Consensus 81 ~~~~p~---~~~~~~l~~~~~~~n~~~c 105 (185)
.. +|. ...++++..+.+.+|+...
T Consensus 101 ~~-~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 101 VE-LGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred Cc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence 74 443 3356778888899998643
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=5.3e-13 Score=92.84 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=73.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+.+++++|.
T Consensus 47 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 47 LSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred EECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 57899999876 7789999999999999999977899888899999999999999953 34788999999999999999
Q ss_pred CcCCCC
Q 039243 80 LRGAIP 85 (185)
Q Consensus 80 l~~~~p 85 (185)
+++..+
T Consensus 125 l~~~~~ 130 (149)
T 2je0_A 125 VTNLND 130 (149)
T ss_dssp GGGSTT
T ss_pred ccchHH
Confidence 986554
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=1.5e-12 Score=109.38 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=74.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 46778888877777788888888888888888777777788888888888888887766677777777777777777777
Q ss_pred cCCCCCC-CcccccccccccCCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
++..|.. ..+.++..+.+.+|..
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCC
T ss_pred ccCCcchhccCCcccEEECCCCcc
Confidence 7543332 2445566666666543
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=105.54 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=73.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++.+..+..|.++++|+.|+|++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 46788888877778888888888888888888877778888888888888888888865556777888888888888887
Q ss_pred cCCCCCCC-cccccccccccC
Q 039243 81 RGAIPQGT-QFSTFANDWFAG 100 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~ 100 (185)
....+..+ .+.++..+.+.+
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCC
T ss_pred cccCHHHhhhCcccCEeCCCC
Confidence 75444322 334444444444
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=6.6e-13 Score=106.10 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=79.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|..+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence 467788888777788888888888888888887 45666677888888888888888 5677777888888888888888
Q ss_pred cCCCCCCCcccccccccccCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~ 107 (185)
+.. + ...+..+..+.+.+|++.|.+
T Consensus 331 ~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 331 VTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred cee-C-chhhccCCEEEcCCCCccchh
Confidence 754 3 334667788888888888854
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.1e-12 Score=108.15 Aligned_cols=103 Identities=22% Similarity=0.154 Sum_probs=65.5
Q ss_pred EecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 2 ILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
+|++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus 150 ~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred ECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC
Confidence 4555555554444443 455555555555555533 21 2246777777777777774 444577888888888888888
Q ss_pred cCCCCCCCcccccccccccCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~ 107 (185)
++..+....+..+..+.+.+|+..|++
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cccchhhccCCCCCEEEcCCCCCcCcc
Confidence 864444445677788888888888753
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=3.2e-12 Score=102.13 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=71.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 46677777776666777777777788877777766677777777777888877777743334456777777788877777
Q ss_pred cCCCCCCC-cccccccccccCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~ 102 (185)
.+..|... .+.++..+.+.+|.
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhhccCCCCCCEEECCCCc
Confidence 76655432 45566666666664
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=6e-13 Score=99.60 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=84.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeeccccc-ccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNN-LRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
|++++|++++..+..|..+++|+.|++++|. ++...+..|..+++|++|++++ |++++..+..|..+++|+.|++++|
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 5788999998877789999999999999997 8867777889999999999998 9999666677888999999999999
Q ss_pred cCcCCCCCCCcccccc---cccccCCCCC
Q 039243 79 HLRGAIPQGTQFSTFA---NDWFAGNPGL 104 (185)
Q Consensus 79 ~l~~~~p~~~~~~~l~---~~~~~~n~~~ 104 (185)
.+++ +|....+..+. .+.+.+|+.+
T Consensus 116 ~l~~-lp~~~~l~~L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 116 GLKM-FPDLTKVYSTDIFFILEITDNPYM 143 (239)
T ss_dssp CCCS-CCCCTTCCBCCSEEEEEEESCTTC
T ss_pred CCcc-ccccccccccccccEEECCCCcch
Confidence 9886 56544555665 7777777433
No 79
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=1.7e-12 Score=100.38 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=49.0
Q ss_pred EecCCcCCCCCc-hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCCc
Q 039243 2 ILLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 2 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N~ 79 (185)
++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 444555544333 344455555555555555554445555555555555555555543 244445555555555555555
Q ss_pred CcCCCCCCC-cccccccccccCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNP 102 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~ 102 (185)
+++..|... .+.++..+.+++|.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCc
Confidence 554433322 23444444444443
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.33 E-value=2.7e-12 Score=106.62 Aligned_cols=104 Identities=24% Similarity=0.397 Sum_probs=65.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccc------------------cCCCCCCEEeCCCCcCCCCCch
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL------------------SNLTVIESLDLSSNKLTGQIPQ 62 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------~~l~~L~~L~l~~N~l~~~~p~ 62 (185)
|++++|+++ .+|..+..+++|+.|++++|.++ .+|..+ ..+++|++|++++|+++ .+|.
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence 355666665 34555555566666666666554 222211 25667777777777777 5565
Q ss_pred HhhcCCCCcEEEecCCcCcCCCCCC-CcccccccccccCCCCCCCCC
Q 039243 63 QLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 63 ~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 108 (185)
...+++|+.|++++|++++..|.. ..+..+..+++++|++.|+|+
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 356777888888888887766653 356677777888888887764
No 81
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=3.2e-12 Score=107.29 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=77.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|.++ .+|..++.+++|+.|+|++|.|++ +| .+..+++|+.|++++|+|++.. |..+..+++|+.|++++|.
T Consensus 468 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred eecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 589999999 788999999999999999999995 67 8999999999999999999776 9999999999999999999
Q ss_pred CcCCCCCC
Q 039243 80 LRGAIPQG 87 (185)
Q Consensus 80 l~~~~p~~ 87 (185)
+++.+|..
T Consensus 545 l~~~~~~~ 552 (567)
T 1dce_A 545 LCQEEGIQ 552 (567)
T ss_dssp GGGSSSCT
T ss_pred CCCCccHH
Confidence 99877654
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.8e-12 Score=92.70 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=44.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCch--HhhcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ--QLAELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~l~l~~N 78 (185)
|++++|.+++. +.+..+++|+.|+|++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.+++++|
T Consensus 47 L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred EECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence 35556665543 34555666666666666666443344455666666666666665 3444 4555666666666666
Q ss_pred cCc
Q 039243 79 HLR 81 (185)
Q Consensus 79 ~l~ 81 (185)
.+.
T Consensus 124 ~i~ 126 (176)
T 1a9n_A 124 PVT 126 (176)
T ss_dssp GGG
T ss_pred CCC
Confidence 655
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=9.3e-13 Score=110.97 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=86.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 5788888888888888899999999999999984 5777778899999999999998 6788888899999999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCGE 107 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~ 107 (185)
.+.. ...+..+..+.+.+|++.|.+
T Consensus 337 ~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 8653 334678888999999998854
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=4.4e-13 Score=105.84 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=32.2
Q ss_pred chHhhcCCCCcEEEecCCcCcCCCCCC--CcccccccccccCCCCCCCCC
Q 039243 61 PQQLAELTSLAFFDVSHNHLRGAIPQG--TQFSTFANDWFAGNPGLCGEP 108 (185)
Q Consensus 61 p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~~c~~~ 108 (185)
|..+..+++|+.|++++|.++ .+|.. ..+.++..+.+.+|++.|.|+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 344566777888888888877 34443 356677777888888887664
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=106.97 Aligned_cols=99 Identities=23% Similarity=0.209 Sum_probs=68.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|+.|..+++|++|+|++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence 467777777777777777777777888877777666777777777777777777777 55554 677777777777777
Q ss_pred cC-CCCCC-CcccccccccccCCC
Q 039243 81 RG-AIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~-~~p~~-~~~~~l~~~~~~~n~ 102 (185)
++ .+|.. ..+.++..+.+++|.
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccccchhhhccCCcceEEEecCcc
Confidence 65 24433 244555555555554
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=4.5e-12 Score=92.25 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=63.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+. .+| .+..+++|+.|++++|.++ . +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 49 L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 49 ITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp EEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred EeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 456677766 334 4666777777777777554 2 23566777777777777777765666677777777777777777
Q ss_pred cCCCCCC-CcccccccccccCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~ 102 (185)
++..|.. ..+..+..+.+.+|.
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCT
T ss_pred CcHhHHHHhhCCCCCEEEccCCC
Confidence 6544332 245566666666665
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.31 E-value=2.1e-12 Score=109.62 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=60.7
Q ss_pred CEecCCcCCCC-----------------Cchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCC-C
Q 039243 1 IILLDNNFVGE-----------------IPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTG-Q 59 (185)
Q Consensus 1 L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~-~ 59 (185)
|+|++|.+++. +|+.++ ++++|++|+|++|.+.+.+|..+..+++|++|++++|+ +++ .
T Consensus 211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence 45666776664 666666 67777777777777766777777777777777777776 665 5
Q ss_pred CchHhhcC------CCCcEEEecCCcCcCCCCC---CCcccccccccccCC
Q 039243 60 IPQQLAEL------TSLAFFDVSHNHLRGAIPQ---GTQFSTFANDWFAGN 101 (185)
Q Consensus 60 ~p~~~~~l------~~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n 101 (185)
+|..+..+ ++|+.|++++|.++ .+|. ...+.++..+.+.+|
T Consensus 291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 291 LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 66555554 55556666555555 4443 223334444444444
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.30 E-value=4.1e-12 Score=105.78 Aligned_cols=102 Identities=20% Similarity=0.091 Sum_probs=74.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 46778888877777788888888888888888877777788888888888888888766667777777788888887777
Q ss_pred cCCCCC-CCcccccccccccCCC
Q 039243 81 RGAIPQ-GTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~-~~~~~~l~~~~~~~n~ 102 (185)
++..+. ...+.++..+.+.+|.
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSC
T ss_pred ccCCCccccccccccEEecCCCc
Confidence 754432 2345566666666664
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=5e-12 Score=107.61 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=54.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 35566666655555566666666666666666655555555556666666666655533333455555555555555555
Q ss_pred cCCCCCCC-cccccccccccCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n 101 (185)
.+..|..+ .+.++..+++.+|
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSS
T ss_pred CccChhHccccCCCCEEECCCC
Confidence 54443322 3444444444444
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.30 E-value=3.6e-12 Score=106.51 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=70.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCc
Confidence 467778887777777888888888888888888777777888888888888888877 56655 677777777777777
Q ss_pred cCC-CCCC-CcccccccccccCCC
Q 039243 81 RGA-IPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~-~p~~-~~~~~l~~~~~~~n~ 102 (185)
++. .|.. ..+.++..+.+++|.
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cccCchHhhcccCcccEEecCCCc
Confidence 753 2322 245566666666664
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=3.4e-12 Score=99.47 Aligned_cols=99 Identities=20% Similarity=0.113 Sum_probs=48.7
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCccccc-CCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-NLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|++++|.+++..+..+..+++|+.|+|++|.+++..+..+. .+++|++|++++|.+++. |.. ..+++|+.|++++|.
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNK 202 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSC
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCc
Confidence 35566666655555555566666666666666654444442 445555555555555422 221 124444555555554
Q ss_pred CcCCCCCCCcccccccccccCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n 101 (185)
+++..+....+.++..+++++|
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTS
T ss_pred CCcchhhhcccCcccEEECcCC
Confidence 4433333223344444444444
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=2.9e-12 Score=111.91 Aligned_cols=84 Identities=25% Similarity=0.207 Sum_probs=45.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCC-cccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYI-PLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|||++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|+.|.++++|++|++++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 456666666655555555555555555555333233 4455555555555555555554445555555555555555555
Q ss_pred CcCCC
Q 039243 80 LRGAI 84 (185)
Q Consensus 80 l~~~~ 84 (185)
+.+..
T Consensus 109 l~~~~ 113 (844)
T 3j0a_A 109 LSDAV 113 (844)
T ss_dssp CSSCC
T ss_pred CCccc
Confidence 55433
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=7.1e-13 Score=103.10 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=16.0
Q ss_pred CcccceeecccccccCCCcccc--cCCCCCCEEeCCCCcCC
Q 039243 19 LKGLQTLNLSNNNLRGYIPLTL--SNLTVIESLDLSSNKLT 57 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~l~~N~l~ 57 (185)
+++|+.|+|++|.+++..|..+ ..+++|++|++++|+++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 3444444444444443333332 33444444444444444
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.8e-11 Score=107.23 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=63.1
Q ss_pred CEecCCcCCCCCchhc-cC-------CcccceeecccccccCCCccccc--CCCCCCEEeCCCCcCCCCCchHhhcCCCC
Q 039243 1 IILLDNNFVGEIPTSI-AS-------LKGLQTLNLSNNNLRGYIPLTLS--NLTVIESLDLSSNKLTGQIPQQLAELTSL 70 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~-~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 70 (185)
|+|++|.++ .+|..+ .. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 456677776 344332 21 226777777777777 5666665 67777777777777774 56666677777
Q ss_pred cEEEecC------CcCcCCCCCCC-cccccccccccCCCC
Q 039243 71 AFFDVSH------NHLRGAIPQGT-QFSTFANDWFAGNPG 103 (185)
Q Consensus 71 ~~l~l~~------N~l~~~~p~~~-~~~~l~~~~~~~n~~ 103 (185)
+.|++++ |.+.+.+|... .+..+..+.+++|..
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 7777755 55666666543 455666666666654
No 95
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=2.8e-12 Score=110.47 Aligned_cols=83 Identities=28% Similarity=0.459 Sum_probs=77.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.++ .+|..|..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..|..+++|+.|++++|.+
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 689999999 78999999999999999999999 88999999999999999999998 7888899999999999999999
Q ss_pred cCCCCC
Q 039243 81 RGAIPQ 86 (185)
Q Consensus 81 ~~~~p~ 86 (185)
++.+|.
T Consensus 329 ~~~~p~ 334 (727)
T 4b8c_D 329 EKQFLK 334 (727)
T ss_dssp CSHHHH
T ss_pred CCCChH
Confidence 876664
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=9.6e-12 Score=97.35 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=65.3
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+.+..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|++++|.+
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCcc
Confidence 467777777776777778888888888888887777777777888888888777777 4554432 5666666666666
Q ss_pred cCCCCCC-CcccccccccccCCC
Q 039243 81 RGAIPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~-~~~~~l~~~~~~~n~ 102 (185)
.+..+.. ..+..+..+.+.+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCSCC
T ss_pred CccCHhHhCCCccCCEEECCCCc
Confidence 6433322 234445555555543
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=8.8e-12 Score=96.92 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=47.5
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCC--Ccccc--cCCCCCCEEeCCCCcCCCC--Cc-hHhhcCCCCcEEE
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY--IPLTL--SNLTVIESLDLSSNKLTGQ--IP-QQLAELTSLAFFD 74 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~l~ 74 (185)
+|++|.+.+..|+.|..+++|+.|+|++|++.+. .|..+ ..+++|++|++++|++++. ++ ..+..+++|+.|+
T Consensus 155 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 4455555544445555555555555555554432 12222 4455555555555555521 11 1223445555666
Q ss_pred ecCCcCcCCCCC--CCcccccccccccCCC
Q 039243 75 VSHNHLRGAIPQ--GTQFSTFANDWFAGNP 102 (185)
Q Consensus 75 l~~N~l~~~~p~--~~~~~~l~~~~~~~n~ 102 (185)
+++|.+++..|. ...+..+..+.+++|.
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 666655554431 1223445555555554
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=5.2e-12 Score=110.57 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=62.1
Q ss_pred CEecCCcCCC-----------------CCchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCC-C
Q 039243 1 IILLDNNFVG-----------------EIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTG-Q 59 (185)
Q Consensus 1 L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~-~ 59 (185)
|+|++|.+++ .+|+.++ ++++|+.|+|++|.+.+.+|..|..+++|+.|++++|+ +++ .
T Consensus 453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~ 532 (876)
T 4ecn_A 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532 (876)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence 4566777766 2666655 67777777777777766777777777777777777776 665 5
Q ss_pred CchHhhcCC-------CCcEEEecCCcCcCCCCC---CCcccccccccccCCC
Q 039243 60 IPQQLAELT-------SLAFFDVSHNHLRGAIPQ---GTQFSTFANDWFAGNP 102 (185)
Q Consensus 60 ~p~~~~~l~-------~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~ 102 (185)
+|..+..++ +|+.|++++|.++ .+|. ...+.++..+.+.+|.
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 665555444 5666666666665 4444 2234444444444443
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=3.6e-12 Score=105.07 Aligned_cols=102 Identities=19% Similarity=0.086 Sum_probs=66.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCccccc-CCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-NLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|.
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCC
Confidence 35666666666666666677777777777777766666664 567777777777777643 32 2246677777777777
Q ss_pred CcCCCCCCCcccccccccccCCCCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
+++..|....+..+..+++++|...
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCCHhHcCCCCccEEEecCCcCc
Confidence 7766555445566777777776543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=96.36 Aligned_cols=100 Identities=22% Similarity=0.221 Sum_probs=65.9
Q ss_pred CEecCCcCCCC--Cc--hhccCCcccceeecccccccCCCcc----cccCCCCCCEEeCCCCcCCCCCchHhhcC---CC
Q 039243 1 IILLDNNFVGE--IP--TSIASLKGLQTLNLSNNNLRGYIPL----TLSNLTVIESLDLSSNKLTGQIPQQLAEL---TS 69 (185)
Q Consensus 1 L~L~~N~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l---~~ 69 (185)
|+|++|.+.+. ++ ..+..+++|++|+|++|.++ .++. .+..+++|++|++++|++++..|..+..+ ++
T Consensus 174 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 174 LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA 252 (310)
T ss_dssp EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred EECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence 46777776642 21 22356777888888888776 3333 24667778888888888876666666555 57
Q ss_pred CcEEEecCCcCcCCCCCCCcccccccccccCCCC
Q 039243 70 LAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 70 L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
|+.|++++|.++ .+|.... .++..+++++|..
T Consensus 253 L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l 284 (310)
T 4glp_A 253 LNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCC
T ss_pred CCEEECCCCCCC-chhhhhc-CCCCEEECCCCcC
Confidence 788888888777 4555432 5677777777754
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=95.84 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=61.4
Q ss_pred CEecCCcCCCCCchhc--cCCcccceeecccccccCCCc----ccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEE
Q 039243 1 IILLDNNFVGEIPTSI--ASLKGLQTLNLSNNNLRGYIP----LTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~ 74 (185)
|++++|.+.+..|..+ ..+++|+.|+|++|.+++..+ ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 4677888888877777 778888888888888876544 3445677888888888888766667777778888888
Q ss_pred ecCCcCcC
Q 039243 75 VSHNHLRG 82 (185)
Q Consensus 75 l~~N~l~~ 82 (185)
+++|++.+
T Consensus 176 Ls~N~l~~ 183 (310)
T 4glp_A 176 LSDNPGLG 183 (310)
T ss_dssp CCSCTTCH
T ss_pred CCCCCCcc
Confidence 88887643
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.20 E-value=4e-11 Score=94.09 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=56.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+
T Consensus 226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC
T ss_pred EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcC
Confidence 3566666665433 56666666666666666632 345666666666666666663 2 2355666666666666666
Q ss_pred cCCCCCCC-cccccccccccCCCCC
Q 039243 81 RGAIPQGT-QFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~-~~~~l~~~~~~~n~~~ 104 (185)
.+..|... .++.+..+.+.+|+..
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCcChhHhhccccCCEEEccCCccc
Confidence 54444322 3455555666666543
No 103
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=6.9e-11 Score=92.29 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=36.6
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 34444444444444444444444444444444444444444444444444444444 34444444444444444444444
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.18 E-value=1.5e-11 Score=91.98 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=71.3
Q ss_pred CEecCCc-CCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc---EEEe
Q 039243 1 IILLDNN-FVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA---FFDV 75 (185)
Q Consensus 1 L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~---~l~l 75 (185)
|++++|. +++..+..|.++++|+.|++++ |.+++..+..|..+++|++|++++|++++ +|. +..+++|+ .+++
T Consensus 60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEE
T ss_pred EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEEC
Confidence 4677786 7766666788888888888887 88886666777888888888888888874 565 66667776 7777
Q ss_pred cCC-cCcCCCCCCC-cccccc-cccccCCCC
Q 039243 76 SHN-HLRGAIPQGT-QFSTFA-NDWFAGNPG 103 (185)
Q Consensus 76 ~~N-~l~~~~p~~~-~~~~l~-~~~~~~n~~ 103 (185)
++| .+++..+..+ .+..+. .+.+.+|..
T Consensus 138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp ESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 777 7765544432 355566 666666643
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=1.8e-11 Score=95.39 Aligned_cols=102 Identities=22% Similarity=0.152 Sum_probs=55.6
Q ss_pred CEecCCcCCCCCchhc-cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243 1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 79 (185)
|+|++|.+++..+..+ ..+++|+.|+|++|.+++. +. ...+++|++|++++|+++ .+|..+..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence 3556666665555544 2456666666666666533 22 223566666666666666 334445566666666666666
Q ss_pred CcCCCCCCCcccccccccccCCCCCC
Q 039243 80 LRGAIPQGTQFSTFANDWFAGNPGLC 105 (185)
Q Consensus 80 l~~~~p~~~~~~~l~~~~~~~n~~~c 105 (185)
+++..+....+..+..+.+.+|+..|
T Consensus 226 l~~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 226 LVLIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred ccchhhHhhcCCCCCEEEccCCCccC
Confidence 65332222244555566666666554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.14 E-value=6.5e-11 Score=91.26 Aligned_cols=95 Identities=27% Similarity=0.421 Sum_probs=58.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++ +| .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+
T Consensus 95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 4566777665 22 366677777777777777643 3466666777777777776643 4566666677777776666
Q ss_pred cCCCCCCCcccccccccccCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
++..| ...+..+..+.+++|.
T Consensus 169 ~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 169 SDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCCGG-GTTCTTCCEEECCSSC
T ss_pred ccchh-hcCCCccCEEECCCCc
Confidence 65443 3344555555555553
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.14 E-value=5.8e-11 Score=92.24 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=53.0
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 45666666653 22 6666666666666666664332 5566666666666666663 333 55566666666666666
Q ss_pred cCCCCCCCcccccccccccCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
++..+ ...+..+..+.+++|.
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSC
T ss_pred CcChh-hcCCCCCCEEEccCCc
Confidence 53322 2334444555555553
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=1.6e-10 Score=89.00 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=62.1
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++..+ +..+++|+.|++++|.+++ +| .+..+++|++|++++|++++ + ..+..+++|+.|++++|.+
T Consensus 73 L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCC
T ss_pred EEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcC
Confidence 4566676665443 6667777777777777763 33 36677777777777777774 3 3466777777777777777
Q ss_pred cCCCCCCCcccccccccccCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
++. +....+.++..+.+++|..
T Consensus 147 ~~~-~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 147 TDI-TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCC
T ss_pred Ccc-hhhccCCCCCEEEccCCcc
Confidence 644 4334556666677766643
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.9e-10 Score=87.48 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=42.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++..+ +..+++|+.|+|++|.+++ +|.... ++|+.|++++|++++ ++ .+..+++|+.|++++|.++
T Consensus 69 ~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC
Confidence 455555554433 5555556665555555553 222111 344444444444442 22 2444555555555555554
Q ss_pred CCCCCCCcccccccccccCCC
Q 039243 82 GAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 82 ~~~p~~~~~~~l~~~~~~~n~ 102 (185)
+. +....+..+..+.+++|.
T Consensus 142 ~~-~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 142 SI-VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp BC-GGGGGCTTCCEEECTTSC
T ss_pred CC-hHHccCCCCCEEECCCCc
Confidence 32 222233444444444443
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=1.7e-10 Score=89.52 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=66.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+.+. + .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+
T Consensus 90 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 90 LELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred EEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcC
Confidence 46777777753 3 57778888888888888874 333 77788888888888888743 33 67777888888888887
Q ss_pred cCCCCCCCcccccccccccCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
++..+ ...+.++..+.+.+|..
T Consensus 164 ~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 164 SDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCChh-hcCCCCCCEEECCCCcc
Confidence 75433 44556666777776643
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=2e-10 Score=87.33 Aligned_cols=98 Identities=26% Similarity=0.270 Sum_probs=80.8
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++. |. +.. ++|+.|+|++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 57899999874 33 333 899999999999995 44 58999999999999999995 45 688999999999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGLCG 106 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~c~ 106 (185)
++. +....+..+..+.+.+|+..+.
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch-HHhccCCCCCEEeCCCCcccCC
Confidence 976 5555677888889999987654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=1.6e-10 Score=97.59 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=48.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4444444432 2344455555555555555533 345555555555555555554333 555556666666666555
Q ss_pred CCCCCCCcccccccccccCCC
Q 039243 82 GAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 82 ~~~p~~~~~~~l~~~~~~~n~ 102 (185)
+. |....+..+..+.+.+|+
T Consensus 189 ~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 189 DL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp BC-GGGTTCTTCSEEECCSEE
T ss_pred CC-hHHccCCCCCEEEccCCc
Confidence 32 333344555555555554
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=2.7e-10 Score=93.06 Aligned_cols=94 Identities=24% Similarity=0.287 Sum_probs=46.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 3455666654433 5555666666666666554333 4555555555555555554333 34455555555555555
Q ss_pred cCCCCCCCcccccccccccCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n 101 (185)
++. +....+..+..+.+.+|
T Consensus 344 ~~~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 344 SDV-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp CCC-GGGTTCTTCCEEECCSS
T ss_pred CCc-hhhccCCCCCEEeCCCC
Confidence 432 22223334444444444
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.03 E-value=2e-10 Score=90.68 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=68.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCc-ccccCCCCCCE-EeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIES-LDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
|+|++|+|+...+++|.++++|+.|+|++|++.+.+| ..|.+++++.. +.+++|+++...|+.|..+++|+.+++++|
T Consensus 35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 5788999987767788999999999999999865555 56788888765 566778898777788889999999999999
Q ss_pred cCcCCCC
Q 039243 79 HLRGAIP 85 (185)
Q Consensus 79 ~l~~~~p 85 (185)
.+....+
T Consensus 115 ~l~~~~~ 121 (350)
T 4ay9_X 115 GIKHLPD 121 (350)
T ss_dssp CCSSCCC
T ss_pred ccccCCc
Confidence 9885544
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=7e-10 Score=93.73 Aligned_cols=94 Identities=29% Similarity=0.419 Sum_probs=50.5
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+.+. +.+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 3444444431 134455555555555555553 2 2355555666666666666533 34556666666666666666
Q ss_pred CCCCCCCcccccccccccCCC
Q 039243 82 GAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 82 ~~~p~~~~~~~l~~~~~~~n~ 102 (185)
+..| ...+..+..+.+++|.
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSC
T ss_pred Cchh-hccCCCCCEEECcCCC
Confidence 5444 3345556666666664
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.02 E-value=7.9e-10 Score=90.32 Aligned_cols=97 Identities=24% Similarity=0.437 Sum_probs=65.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 3566666665544 6667777777777777774433 6677777777777777775433 66777888888888887
Q ss_pred cCCCCCCCcccccccccccCCCCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGNPGL 104 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n~~~ 104 (185)
.+..| ...+..+..+.+.+|...
T Consensus 322 ~~~~~-~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 322 SDISP-VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp SCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCchh-hccCccCCEeECCCCccC
Confidence 76555 345666777777777543
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=2.2e-12 Score=94.04 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=76.3
Q ss_pred EecCCcCCCCCch------hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEe
Q 039243 2 ILLDNNFVGEIPT------SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV 75 (185)
Q Consensus 2 ~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l 75 (185)
+++.+.+++..|. .+..+++|+.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEEC
Confidence 4667777777766 78888999999999999985 66 7888899999999999998 67887777788899999
Q ss_pred cCCcCcCCCCCCCcccccccccccCCCC
Q 039243 76 SHNHLRGAIPQGTQFSTFANDWFAGNPG 103 (185)
Q Consensus 76 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 103 (185)
++|.+++ +|....+..+..+.+.+|..
T Consensus 101 ~~N~l~~-l~~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 101 SYNQIAS-LSGIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp EEEECCC-HHHHHHHHHSSEEEESEEEC
T ss_pred cCCcCCc-CCccccCCCCCEEECCCCcC
Confidence 9988885 34333455666777777643
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=1.9e-12 Score=94.27 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=82.9
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|+.|++++|.+
T Consensus 53 L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 53 LALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp EECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEEC
T ss_pred EECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcC
Confidence 5788999887 56 7888999999999999999 778888888999999999999995 55 688889999999999999
Q ss_pred cCCCC--CCCcccccccccccCCCCCCC
Q 039243 81 RGAIP--QGTQFSTFANDWFAGNPGLCG 106 (185)
Q Consensus 81 ~~~~p--~~~~~~~l~~~~~~~n~~~c~ 106 (185)
++..+ ....+.++..+.+.+|+..+.
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccc
Confidence 85332 233567788888888876554
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.95 E-value=2.3e-09 Score=87.63 Aligned_cols=91 Identities=26% Similarity=0.268 Sum_probs=54.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++. | .+..+++|+.|+|++|.+++. | +..+++|++|++++|.+++. | +..+++|++|++++|.+
T Consensus 47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 45667777654 3 466677777777777777643 3 66666677777777666643 3 55666666666666666
Q ss_pred cCCCCCCCcccccccccccCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n 101 (185)
++. | ...+.++..+.+.+|
T Consensus 119 ~~l-~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 119 TKL-D-VSQNPLLTYLNCARN 137 (457)
T ss_dssp SCC-C-CTTCTTCCEEECTTS
T ss_pred Cee-c-CCCCCcCCEEECCCC
Confidence 642 3 223444444444444
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=9.1e-10 Score=92.39 Aligned_cols=68 Identities=34% Similarity=0.393 Sum_probs=28.9
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
+|++|.+++ +|. .+++|+.|+|++|.|++ +|. .+++|+.|++++|+|++ +|. +. ++|+.|++++|.++
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 444444444 232 33444444444444442 332 23444444444444442 333 22 34444444444444
No 121
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.93 E-value=3.4e-09 Score=83.04 Aligned_cols=93 Identities=24% Similarity=0.342 Sum_probs=47.9
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
++++|.+... | .+..+++|++|++++|.++.. +. +..+++|++|++++|.++. +| .+..+++|+++++++|.+.
T Consensus 50 ~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 50 VVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp ECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC
T ss_pred EEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc
Confidence 4455555432 2 255556666666666666532 22 5556666666666666652 32 3555556666666666555
Q ss_pred CCCCCCCcccccccccccCC
Q 039243 82 GAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 82 ~~~p~~~~~~~l~~~~~~~n 101 (185)
+..+ ...+..+..+.+.+|
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTC
T ss_pred Cchh-hccCCceeEEECCCC
Confidence 3222 233444444444444
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=3.2e-10 Score=89.77 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=49.1
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCc----ccccCCC-CCCEEeCCCCcCCCCCchHhhcC-----CCCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP----LTLSNLT-VIESLDLSSNKLTGQIPQQLAEL-----TSLA 71 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~L~ 71 (185)
+++.|++++.+|..+...++|+.|+|++|.++...+ ..+..++ +|++|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 455666666666655555556666666666665444 4555555 56666666666665555555543 5666
Q ss_pred EEEecCCcCcCCC
Q 039243 72 FFDVSHNHLRGAI 84 (185)
Q Consensus 72 ~l~l~~N~l~~~~ 84 (185)
.|++++|.+++..
T Consensus 84 ~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 84 SLNLSGNFLSYKS 96 (362)
T ss_dssp EEECCSSCGGGSC
T ss_pred EEECcCCcCChHH
Confidence 6666666665433
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=3.1e-09 Score=89.14 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCC
Q 039243 43 LTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNP 102 (185)
Q Consensus 43 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 102 (185)
+++|+.|++++|.|++ +|. .+++|+.|++++|.+++ +|. +. .++..+.+++|.
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNL 191 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSC
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCC
Confidence 3444444444444442 333 23445555555555543 333 22 444455555553
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=2.9e-10 Score=90.01 Aligned_cols=103 Identities=21% Similarity=0.217 Sum_probs=74.2
Q ss_pred CEecCCcCCCCCc----hhccCCc-ccceeecccccccCCCcccccCC-----CCCCEEeCCCCcCCCCCchHhhc----
Q 039243 1 IILLDNNFVGEIP----TSIASLK-GLQTLNLSNNNLRGYIPLTLSNL-----TVIESLDLSSNKLTGQIPQQLAE---- 66 (185)
Q Consensus 1 L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~---- 66 (185)
|+|++|.+++..+ +.|..++ +|+.|+|++|.+++..+..+..+ ++|++|++++|.+++..+..+..
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 5788888887776 6777787 89999999998887777777665 88888999988888666665444
Q ss_pred C-CCCcEEEecCCcCcCCCCCCC-----c-ccccccccccCCCC
Q 039243 67 L-TSLAFFDVSHNHLRGAIPQGT-----Q-FSTFANDWFAGNPG 103 (185)
Q Consensus 67 l-~~L~~l~l~~N~l~~~~p~~~-----~-~~~l~~~~~~~n~~ 103 (185)
+ ++|+.|++++|.+++..+... . ...+..+.+++|..
T Consensus 107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 3 788888888888875443221 1 13566666666643
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.87 E-value=8.3e-09 Score=84.34 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=66.6
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++. | ++.+++|+.|++++|.+++. + ++.+++|++|++++|++++ +| +..+++|+.|++++|.+
T Consensus 69 L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 69 LICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp EECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCC
T ss_pred EEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcc
Confidence 57888888875 3 77888888888888888854 3 7788888888888888885 44 67788888888888888
Q ss_pred cCCCCCCCcccccccccccCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n 101 (185)
++. + ...+..+..+.+.+|
T Consensus 140 ~~l-~-l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 140 TEI-D-VSHNTQLTELDCHLN 158 (457)
T ss_dssp SCC-C-CTTCTTCCEEECTTC
T ss_pred cee-c-cccCCcCCEEECCCC
Confidence 764 3 334455555555555
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.81 E-value=2.6e-10 Score=89.00 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=34.7
Q ss_pred EecCCcCCCC-CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCC-cCCCC-CchHhhcCCCCcEEEecCC
Q 039243 2 ILLDNNFVGE-IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN-KLTGQ-IPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 2 ~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~l~l~~N 78 (185)
+|++|.+++. +|..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++|
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 3444444333 3444444444555555544444444444444445555555544 34321 3333444444444444444
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.80 E-value=4.8e-10 Score=89.35 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=65.5
Q ss_pred CEecCCcCC--C---CCchhccCCcccceeeccccccc----CCCcccccCCCCCCEEeCCCCcCCCC----CchHhhc-
Q 039243 1 IILLDNNFV--G---EIPTSIASLKGLQTLNLSNNNLR----GYIPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAE- 66 (185)
Q Consensus 1 L~L~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~- 66 (185)
|+|++|.+. + ..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++. +|..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 355666665 2 23335666677777777777774 45666677777777777777777644 3444533
Q ss_pred -CCCCcEEEecCCcCcC----CCCCCC--cccccccccccCCCCCC
Q 039243 67 -LTSLAFFDVSHNHLRG----AIPQGT--QFSTFANDWFAGNPGLC 105 (185)
Q Consensus 67 -l~~L~~l~l~~N~l~~----~~p~~~--~~~~l~~~~~~~n~~~c 105 (185)
+++|+.|++++|.+++ .+|... .++++..+.+.+|+...
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 6777777777777765 244332 24666777777776554
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=1.5e-08 Score=82.69 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=42.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|++++|.+++ +| .|+.+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+..+++|+.+++++|.+
T Consensus 136 L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 136 LGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred EECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC
Confidence 3556666664 44 36666666666666666663 44322 356666666666653 44 355566666666666665
Q ss_pred cC
Q 039243 81 RG 82 (185)
Q Consensus 81 ~~ 82 (185)
++
T Consensus 208 ~~ 209 (454)
T 1jl5_A 208 KK 209 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=1.4e-09 Score=88.92 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=44.5
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCC-------------CEEeCCCCcCCCCCchHhhcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVI-------------ESLDLSSNKLTGQIPQQLAEL 67 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~l~~N~l~~~~p~~~~~l 67 (185)
|++++|++ +.+|++++++++|++|++++|.++|.+|..++.+.+| ++|++++|.+++ +|.. .
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~ 90 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---P 90 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---C
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---c
Confidence 46788998 7899999999999999999999999999988887654 777777777774 3431 2
Q ss_pred CCCcEEEecCCcCcC
Q 039243 68 TSLAFFDVSHNHLRG 82 (185)
Q Consensus 68 ~~L~~l~l~~N~l~~ 82 (185)
++|+.+++++|.+++
T Consensus 91 ~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 91 PHLESLVASCNSLTE 105 (454)
T ss_dssp TTCSEEECCSSCCSS
T ss_pred CCCCEEEccCCcCCc
Confidence 456666666666665
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=4.8e-09 Score=82.69 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc-hHhhcCCCCcE-EEecCCc
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP-QQLAELTSLAF-FDVSHNH 79 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~-l~l~~N~ 79 (185)
+.++++++ .+|..+ .++++.|+|++|+|+...++.|.++++|++|+|++|++.+.+| +.|.+++++.. +.++.|+
T Consensus 15 ~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 45678888 567655 3689999999999996666789999999999999999876665 46788888765 6677899
Q ss_pred CcCCCCCCC-cccccccccccCCCC
Q 039243 80 LRGAIPQGT-QFSTFANDWFAGNPG 103 (185)
Q Consensus 80 l~~~~p~~~-~~~~l~~~~~~~n~~ 103 (185)
+....|..+ .+.++..+.+.+|..
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECC
T ss_pred ccccCchhhhhcccccccccccccc
Confidence 997777654 466777777777653
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=6.6e-10 Score=86.64 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=77.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC-
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN- 78 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N- 78 (185)
|++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 75 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 75 FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 46778888877665 55789999999999999865 7888899999999999999998888888999999999999999
Q ss_pred cCcCC-CCC-CCcccccccccccCC
Q 039243 79 HLRGA-IPQ-GTQFSTFANDWFAGN 101 (185)
Q Consensus 79 ~l~~~-~p~-~~~~~~l~~~~~~~n 101 (185)
.+++. ++. ...++++..+.+.+|
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 56531 222 113445555555555
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=2e-08 Score=85.06 Aligned_cols=76 Identities=29% Similarity=0.416 Sum_probs=42.5
Q ss_pred cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-Ccccccccccc
Q 039243 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWF 98 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~ 98 (185)
++|+.|+|++|.|++ +| ..+++|+.|++++|.|+ .+|. .+++|+.|++++|.++ .+|.. ..++++..+.+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445555666666553 33 23455666666666666 3444 3456666666666666 33432 24555666666
Q ss_pred cCCCCC
Q 039243 99 AGNPGL 104 (185)
Q Consensus 99 ~~n~~~ 104 (185)
.+|+..
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 666643
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=1.2e-08 Score=86.40 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=66.4
Q ss_pred CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
|+|++|++++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++
T Consensus 226 L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 226 LIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred EEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 4678888886 44 45689999999999999 5665 6789999999999999 7899999999999999999999
Q ss_pred cCCCCC
Q 039243 81 RGAIPQ 86 (185)
Q Consensus 81 ~~~~p~ 86 (185)
++..|.
T Consensus 297 ~~~~~~ 302 (622)
T 3g06_A 297 SERTLQ 302 (622)
T ss_dssp CHHHHH
T ss_pred CCcCHH
Confidence 877664
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.70 E-value=2.2e-09 Score=85.52 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=72.6
Q ss_pred CEecCCcCC----CCCchhccCCcccceeecccccccCC----Cccccc--CCCCCCEEeCCCCcCCC----CCchHh-h
Q 039243 1 IILLDNNFV----GEIPTSIASLKGLQTLNLSNNNLRGY----IPLTLS--NLTVIESLDLSSNKLTG----QIPQQL-A 65 (185)
Q Consensus 1 L~L~~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~~----~~p~~~-~ 65 (185)
|+|++|.++ +.+|..+..+++|+.|+|++|.+++. ++..+. .+++|+.|++++|.++. .+|..+ .
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 578999986 67888899999999999999999865 566663 48999999999999996 378877 6
Q ss_pred cCCCCcEEEecCCcCcCCCC
Q 039243 66 ELTSLAFFDVSHNHLRGAIP 85 (185)
Q Consensus 66 ~l~~L~~l~l~~N~l~~~~p 85 (185)
++++|+.|++++|.+++..+
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSH
T ss_pred cCCCceEEEccCCcCCcchh
Confidence 68999999999999986654
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=4.4e-09 Score=80.12 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=42.7
Q ss_pred cCCcccceeecccccccC--CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCC--CCcEEEecCCcCcCCCC
Q 039243 17 ASLKGLQTLNLSNNNLRG--YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT--SLAFFDVSHNHLRGAIP 85 (185)
Q Consensus 17 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~p 85 (185)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 346677777777777775 3345556677777777777777743 2233333 67777777777765554
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=2.9e-08 Score=75.63 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=59.0
Q ss_pred CEecCCcCCC--CCchhccCCcccceeecccccccCCCcccccCCC--CCCEEeCCCCcCCCCCch-------HhhcCCC
Q 039243 1 IILLDNNFVG--EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT--VIESLDLSSNKLTGQIPQ-------QLAELTS 69 (185)
Q Consensus 1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~-------~~~~l~~ 69 (185)
|+|++|.+++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|+ .+..+++
T Consensus 175 L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~ 252 (267)
T 3rw6_A 175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 252 (267)
T ss_dssp EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTT
T ss_pred EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcc
Confidence 6899999998 4557778899999999999999965 3344444 999999999999976662 4678899
Q ss_pred CcEEEe
Q 039243 70 LAFFDV 75 (185)
Q Consensus 70 L~~l~l 75 (185)
|+.||-
T Consensus 253 L~~LDg 258 (267)
T 3rw6_A 253 LLRLDG 258 (267)
T ss_dssp CCEESS
T ss_pred cCeECC
Confidence 998864
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=1.2e-07 Score=74.07 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=42.2
Q ss_pred EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCC-EEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIE-SLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
+|++|+++...+.+|.++.+|+.++|++| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.++++.|.+
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 44455555444455555555555555555 4444445555555555 555555 44434445555555555555555555
Q ss_pred c
Q 039243 81 R 81 (185)
Q Consensus 81 ~ 81 (185)
+
T Consensus 310 ~ 310 (329)
T 3sb4_A 310 T 310 (329)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.46 E-value=2.6e-08 Score=80.77 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=66.8
Q ss_pred CEecCCcCCCCCchhcc-----CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHhhc-----
Q 039243 1 IILLDNNFVGEIPTSIA-----SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQLAE----- 66 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~----- 66 (185)
|++++|.+....+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.++...+..+..
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence 46777877654433332 225788888888888754 4555666788888888888877554554443
Q ss_pred CCCCcEEEecCCcCcC----CCCCC-CcccccccccccCCCC
Q 039243 67 LTSLAFFDVSHNHLRG----AIPQG-TQFSTFANDWFAGNPG 103 (185)
Q Consensus 67 l~~L~~l~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~~ 103 (185)
.++|+.|++++|.+++ .+|.. ...+++..+++.+|+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 5678888888887764 33332 1345667777777754
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=5.9e-09 Score=84.55 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=31.1
Q ss_pred CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHhhcC-----CCCcEEEecCCcCc
Q 039243 18 SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQLAEL-----TSLAFFDVSHNHLR 81 (185)
Q Consensus 18 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~l~l~~N~l~ 81 (185)
.+++|+.|++++|.++.. ++..+..+++|++|++++|.++...+..+... ++|+.|++++|.++
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 355566666666655532 34444455555555555555543222222221 34555555555444
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.25 E-value=1.7e-07 Score=74.59 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=72.1
Q ss_pred CEecCCcCCCCCchhc-----cCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243 1 IILLDNNFVGEIPTSI-----ASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL 67 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l 67 (185)
|+|++|.++..-...+ ...++|+.|+|++|.|+.. ++..+...++|++|+|++|.|+.. ++..+...
T Consensus 131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 5788998875544444 3467899999999998742 444457788999999999998742 24456677
Q ss_pred CCCcEEEecCCcCcCCCCCC-----CcccccccccccCCCC
Q 039243 68 TSLAFFDVSHNHLRGAIPQG-----TQFSTFANDWFAGNPG 103 (185)
Q Consensus 68 ~~L~~l~l~~N~l~~~~p~~-----~~~~~l~~~~~~~n~~ 103 (185)
++|+.|++++|.++...... ...+.+..+++++|+.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 88999999999886321111 1235677778888864
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=6.4e-08 Score=77.14 Aligned_cols=102 Identities=21% Similarity=0.124 Sum_probs=63.7
Q ss_pred CEecCCcCCCCCchhc-cCCcccceeecccccccCCCcccc-----cCCCCCCEEeCCCCcCCCC----CchHhhcCCCC
Q 039243 1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTL-----SNLTVIESLDLSSNKLTGQ----IPQQLAELTSL 70 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L 70 (185)
|+|++|.++..-...+ ..+++|+.|+|++|.++......+ ...++|+.|+|++|.|+.. ++..+...++|
T Consensus 106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L 185 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185 (372)
T ss_dssp EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSC
T ss_pred EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCc
Confidence 5778887764433333 345678888888888864433333 2457788888888888632 33445667788
Q ss_pred cEEEecCCcCcCCC----CCC-CcccccccccccCCC
Q 039243 71 AFFDVSHNHLRGAI----PQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 71 ~~l~l~~N~l~~~~----p~~-~~~~~l~~~~~~~n~ 102 (185)
++|++++|.+...- +.. .....+..+++++|.
T Consensus 186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 88888888876311 110 123456666777664
No 142
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.86 E-value=1.8e-05 Score=53.62 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=43.2
Q ss_pred ceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCC
Q 039243 23 QTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAI 84 (185)
Q Consensus 23 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 84 (185)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...++.|..+++|+.++|++|.+....
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 36777888776 34554332 46888888888888666667788888888888888886543
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=3.3e-06 Score=60.58 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=60.1
Q ss_pred CEecCC-cCCCC----CchhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243 1 IILLDN-NFVGE----IPTSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL 67 (185)
Q Consensus 1 L~L~~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l 67 (185)
|+|++| .+... +...+...++|+.|+|++|.|+.. +...+...++|++|+|++|.|+.. +...+...
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN 120 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence 567888 77642 345566778999999999998732 334455668899999999999843 34456667
Q ss_pred CCCcEEEe--cCCcCc
Q 039243 68 TSLAFFDV--SHNHLR 81 (185)
Q Consensus 68 ~~L~~l~l--~~N~l~ 81 (185)
++|+.|++ +.|.+.
T Consensus 121 ~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 121 TSLIELRIDNQSQPLG 136 (185)
T ss_dssp SSCCEEECCCCSSCCC
T ss_pred CCceEEEecCCCCCCC
Confidence 78999999 788886
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.82 E-value=2.8e-06 Score=70.90 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=41.1
Q ss_pred ccCCcccceeecccc--cccCCCccccc-CCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCCcCcCCC-CCC-Cc
Q 039243 16 IASLKGLQTLNLSNN--NLRGYIPLTLS-NLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHNHLRGAI-PQG-TQ 89 (185)
Q Consensus 16 ~~~l~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~-p~~-~~ 89 (185)
+.++++|+.|+++++ .+++..+..+. .+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.. +.. ..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 445566666666532 24433333322 255566666666665531 2333345556666666666543211 111 12
Q ss_pred ccccccccccCCC
Q 039243 90 FSTFANDWFAGNP 102 (185)
Q Consensus 90 ~~~l~~~~~~~n~ 102 (185)
++++..+++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 3445555555554
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=2.9e-05 Score=60.32 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=65.9
Q ss_pred CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc-EEEecCCcCcCCCCCCC-cccccccc
Q 039243 19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA-FFDVSHNHLRGAIPQGT-QFSTFAND 96 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~p~~~-~~~~l~~~ 96 (185)
+++|+.++|++|.++...+..|.++.+|+.+++++| ++...+.+|.++.+|+ .+++.+ .++...+..+ ...++..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999777788999999999999998 8767777899999999 999988 6664444443 34566777
Q ss_pred cccCCC
Q 039243 97 WFAGNP 102 (185)
Q Consensus 97 ~~~~n~ 102 (185)
.+.+|.
T Consensus 303 ~l~~n~ 308 (329)
T 3sb4_A 303 LATGDK 308 (329)
T ss_dssp EECSSC
T ss_pred EeCCCc
Confidence 765553
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=5e-06 Score=59.62 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=62.2
Q ss_pred hhccCCcccceeecccc-cccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcCCCCcEEEecCCcCcCCC
Q 039243 14 TSIASLKGLQTLNLSNN-NLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAELTSLAFFDVSHNHLRGAI 84 (185)
Q Consensus 14 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~ 84 (185)
..+...+.|+.|+|++| .|... +...+...++|++|+|++|.+... +...+...++|++|++++|.+...-
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44667889999999999 88632 344566778999999999999742 2344556689999999999986311
Q ss_pred ----CC-CCcccccccccc--cCCC
Q 039243 85 ----PQ-GTQFSTFANDWF--AGNP 102 (185)
Q Consensus 85 ----p~-~~~~~~l~~~~~--~~n~ 102 (185)
.. ......+..+.+ .+|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC
Confidence 11 112345666677 5554
No 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.81 E-value=5.3e-05 Score=51.20 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=32.3
Q ss_pred EecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCC
Q 039243 2 ILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57 (185)
Q Consensus 2 ~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 57 (185)
+.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34455554 23443332 45667777777777555566666777777777777664
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.72 E-value=7.4e-06 Score=68.28 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=26.8
Q ss_pred CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCC----CCchHhhcCCCCcEEEecCCcC
Q 039243 18 SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTG----QIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 18 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l 80 (185)
.+++|+.|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 344555555555554433 22223334444555555444441 1222233444444444444443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.53 E-value=0.00017 Score=57.89 Aligned_cols=94 Identities=7% Similarity=0.028 Sum_probs=61.7
Q ss_pred CcCCCCCchhccCCcccceeeccccccc-----CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243 6 NNFVGEIPTSIASLKGLQTLNLSNNNLR-----GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80 (185)
Q Consensus 6 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 80 (185)
++++..-..+|.++++|+.+++.+|.+. ...+..|.++.+|+.+++. +.++.....+|.++.+|+.+++..| +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 3445455667778888888888777664 3556677888888888887 4466455667778888888888554 4
Q ss_pred cCCCCCCCcccccccccccCC
Q 039243 81 RGAIPQGTQFSTFANDWFAGN 101 (185)
Q Consensus 81 ~~~~p~~~~~~~l~~~~~~~n 101 (185)
+..-+..+.-..+..+.+.+|
T Consensus 335 ~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 335 TQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp CEECTTSSSSSCCCEEEECCS
T ss_pred cEEcHHhCCCCCCCEEEEcCC
Confidence 433333333236666666666
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.44 E-value=9.9e-06 Score=67.48 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred ccCCcccceeecccccccCCCcccccC-CCCCCEEeCCCCcCCCCCchHh-hcCCCCcEEEecCCcCcCCCCC-C-Cccc
Q 039243 16 IASLKGLQTLNLSNNNLRGYIPLTLSN-LTVIESLDLSSNKLTGQIPQQL-AELTSLAFFDVSHNHLRGAIPQ-G-TQFS 91 (185)
Q Consensus 16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p~-~-~~~~ 91 (185)
+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... . ..++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 55677888888876 555444444444 7788888888888875544444 5678888888888887432221 1 1356
Q ss_pred ccccccccCCCC
Q 039243 92 TFANDWFAGNPG 103 (185)
Q Consensus 92 ~l~~~~~~~n~~ 103 (185)
++..+.+.+|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 677777777654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=3.8e-05 Score=54.67 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=41.2
Q ss_pred cccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCCCCchHhhcC----CCCcEEEecCCc
Q 039243 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTGQIPQQLAEL----TSLAFFDVSHNH 79 (185)
Q Consensus 20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l----~~L~~l~l~~N~ 79 (185)
-.|+.||++++.|+..--..+..+++|+.|+|+++. ++..--..+..+ ++|++|+++++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 358888888888775544556788888888888874 653222334443 368888888764
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.27 E-value=5.6e-05 Score=62.94 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=23.1
Q ss_pred EecCCcCCCCCchhcc-CCcccceeecccc-cccCC-CcccccCCCCCCEEeCCCCcCC
Q 039243 2 ILLDNNFVGEIPTSIA-SLKGLQTLNLSNN-NLRGY-IPLTLSNLTVIESLDLSSNKLT 57 (185)
Q Consensus 2 ~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~l~~N~l~ 57 (185)
+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..+++|++|++++|.++
T Consensus 111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 3444444443333332 3444555555444 22211 2222234444555555544444
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.08 E-value=0.00071 Score=54.22 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243 10 GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 10 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
...+.+|.++++|+.++|. +.++..-...|.++.+|+.+++..| ++...+.+|.++ +|+.+++.+|.+.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3556789999999999999 4587677788999999999999665 765667789999 9999999999776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.85 E-value=0.0002 Score=56.73 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred CCcccceeeccc--ccccCC-----Ccccc--cCCCCCCEEeCCCCcCCCCCchHhh---cCCCCcEEEecCCcCcCC--
Q 039243 18 SLKGLQTLNLSN--NNLRGY-----IPLTL--SNLTVIESLDLSSNKLTGQIPQQLA---ELTSLAFFDVSHNHLRGA-- 83 (185)
Q Consensus 18 ~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~l~l~~N~l~~~-- 83 (185)
.+++|+.|+|+. |...+. +...+ ..+++|++|++.+|.++...+..+. .+++|+.|+++.|.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 577888887753 221111 11112 2467888888887777643333443 356788888888877642
Q ss_pred --CCCC-CcccccccccccCCC
Q 039243 84 --IPQG-TQFSTFANDWFAGNP 102 (185)
Q Consensus 84 --~p~~-~~~~~l~~~~~~~n~ 102 (185)
++.. ..++++..+.+..|.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 2222 134556666665553
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.60 E-value=0.00033 Score=55.45 Aligned_cols=84 Identities=10% Similarity=0.143 Sum_probs=48.3
Q ss_pred CcccceeecccccccCCCccccc--CCCCCCEEeCCC--CcCCCC-----CchHh--hcCCCCcEEEecCCcCcCCCCC-
Q 039243 19 LKGLQTLNLSNNNLRGYIPLTLS--NLTVIESLDLSS--NKLTGQ-----IPQQL--AELTSLAFFDVSHNHLRGAIPQ- 86 (185)
Q Consensus 19 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~--~~l~~L~~l~l~~N~l~~~~p~- 86 (185)
+++|+.|+|..+.++...-..+. .+++|+.|+|+. |...+. +...+ ..+++|+.|++.+|.+....+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 67888888888877643333333 678888888742 222111 11112 2467888898888877532111
Q ss_pred ---CCcccccccccccCCC
Q 039243 87 ---GTQFSTFANDWFAGNP 102 (185)
Q Consensus 87 ---~~~~~~l~~~~~~~n~ 102 (185)
...++.+..++++.|.
T Consensus 272 la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHCSSGGGCSEEECCSSC
T ss_pred HHhCccCCCCCEEECCCCC
Confidence 1134566667776553
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.12 E-value=0.0054 Score=48.65 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=39.2
Q ss_pred hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
.|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 4566677777777554 44345566777777777777543 55344556777777777777655
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.89 E-value=0.014 Score=46.16 Aligned_cols=85 Identities=14% Similarity=0.272 Sum_probs=54.6
Q ss_pred chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-C-cc
Q 039243 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-T-QF 90 (185)
Q Consensus 13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~-~~ 90 (185)
..+|.++..|+.+.+. +.++......|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++ .+... + ..
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C 356 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNC 356 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTC
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCC
Confidence 4456777888888875 4455455667888888888888754 55344567888888888888654 44 23322 2 23
Q ss_pred cccccccccCC
Q 039243 91 STFANDWFAGN 101 (185)
Q Consensus 91 ~~l~~~~~~~n 101 (185)
.+|..+.+.++
T Consensus 357 ~~L~~i~~~~~ 367 (394)
T 4gt6_A 357 TALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEESSC
T ss_pred CCCCEEEECCc
Confidence 45666666655
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.83 E-value=0.0042 Score=44.05 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=52.2
Q ss_pred CEecCCcCCCCCchhccCCcccceeeccccc-ccCCCcccccCC----CCCCEEeCCCC-cCCCCCchHhhcCCCCcEEE
Q 039243 1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNN-LRGYIPLTLSNL----TVIESLDLSSN-KLTGQIPQQLAELTSLAFFD 74 (185)
Q Consensus 1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~l~ 74 (185)
||++++.++..--..+..+++|+.|+|+++. |+..--..+..+ ++|++|+++++ ++|..--..+..+++|+.|+
T Consensus 66 LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~ 145 (176)
T 3e4g_A 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLF 145 (176)
T ss_dssp EEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEE
T ss_pred EeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEE
Confidence 5777877765544556788888888888875 553322334443 36888888876 47643334566788888888
Q ss_pred ecCC
Q 039243 75 VSHN 78 (185)
Q Consensus 75 l~~N 78 (185)
+++.
T Consensus 146 L~~c 149 (176)
T 3e4g_A 146 LSDL 149 (176)
T ss_dssp EESC
T ss_pred CCCC
Confidence 8865
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.70 E-value=0.0093 Score=46.85 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=51.8
Q ss_pred CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 8 FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 8 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
++..-..+|.++..|+.+.+..+ ++......|.++.+|+.+.+.++.++.....+|.++.+|+.+++..+
T Consensus 251 v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 251 VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 33334456777888888888654 55455667888889999999888887555677888888998888654
No 160
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.09 E-value=0.01 Score=31.80 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=6.3
Q ss_pred hHhHHHHHHhhhhhh
Q 039243 138 VLAGYASGTIIGVVL 152 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (185)
++.++++++++++++
T Consensus 13 IA~gVVgGv~~~~ii 27 (44)
T 2ks1_B 13 IATGMVGALLLLLVV 27 (44)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHH
Confidence 444444444443333
No 161
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.03 E-value=0.015 Score=31.13 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=7.0
Q ss_pred hHhHHHHHHhhhhhhh
Q 039243 138 VLAGYASGTIIGVVLG 153 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~ 153 (185)
++.+++++++++++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4444444444433333
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.01 E-value=0.051 Score=42.94 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=46.3
Q ss_pred chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78 (185)
Q Consensus 13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N 78 (185)
..+|.++..|+.+.+..+..+ .-...|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence 456777888888888766554 566778888888888886 4455355567888888888888654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.90 E-value=0.06 Score=42.13 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC-c
Q 039243 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT-Q 89 (185)
Q Consensus 11 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~ 89 (185)
.....|.++..|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...+ .
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33456777888888888766 55456677888888888888654 543445678888889998888877763333332 2
Q ss_pred ccccccccc
Q 039243 90 FSTFANDWF 98 (185)
Q Consensus 90 ~~~l~~~~~ 98 (185)
..++..+.+
T Consensus 309 c~~L~~i~l 317 (379)
T 4h09_A 309 CVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEC
T ss_pred CCCCCEEEc
Confidence 244554444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.76 E-value=0.011 Score=42.70 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=44.7
Q ss_pred cCCcccceeecccc-cccC----CCcccccCCCCCCEEeCCCCcCCC----CCchHhhcCCCCcEEEecCCcCc
Q 039243 17 ASLKGLQTLNLSNN-NLRG----YIPLTLSNLTVIESLDLSSNKLTG----QIPQQLAELTSLAFFDVSHNHLR 81 (185)
Q Consensus 17 ~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l~ 81 (185)
.+-+.|+.|+|++| .|.. .+-..+..-..|+.|+|++|.|.. .+...+..-++|+.|+|+.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44567888899885 6652 133445556788999999998862 22334555678899999998885
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.31 E-value=0.063 Score=42.40 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=35.5
Q ss_pred chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
...|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.+
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 344556666666665554432 234666667777776544 4434445666677777777654
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.029 Score=40.45 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=43.5
Q ss_pred hhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCch----HhhcCCCCcEEEecCC
Q 039243 14 TSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQ----QLAELTSLAFFDVSHN 78 (185)
Q Consensus 14 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~l~l~~N 78 (185)
+.+..=+.|+.|+|++|.|... +...+..-+.|+.|+|+.|.|+..--. .+..-..|+.|++++|
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4455557899999999998632 333344557899999999998743222 2333456888888765
No 167
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=92.79 E-value=0.07 Score=30.87 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=4.7
Q ss_pred HhHHHHHHhhhh
Q 039243 139 LAGYASGTIIGV 150 (185)
Q Consensus 139 ~~~~~~~~~~~~ 150 (185)
++|.++++++++
T Consensus 13 vlGg~~~lll~~ 24 (70)
T 2klu_A 13 VLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 344334433333
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=80.84 E-value=1.4 Score=22.77 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=4.5
Q ss_pred hHhHHHHHHhh
Q 039243 138 VLAGYASGTII 148 (185)
Q Consensus 138 ~~~~~~~~~~~ 148 (185)
+++++++++++
T Consensus 15 I~~~vv~Gv~l 25 (41)
T 2k9y_A 15 VIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 33444444443
No 169
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=75.62 E-value=2.3 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=13.7
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+.+++++++++++++.+++++.+
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555544
No 170
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.23 E-value=2.7 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=13.9
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+.+++++++++++++.+++++.+
T Consensus 12 ~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665555544
No 171
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=71.79 E-value=3 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=13.8
Q ss_pred hhhhHhHHHHHHhhhhhhhhhhh
Q 039243 135 WKIVLAGYASGTIIGVVLGYIFC 157 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+.+++++++++++++.+++++.+
T Consensus 10 ~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665555544
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.45 E-value=10 Score=23.69 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=21.9
Q ss_pred cCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCC
Q 039243 7 NFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLS 52 (185)
Q Consensus 7 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 52 (185)
.++.+-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444445555555655555443 222334445555555555444
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.95 E-value=11 Score=23.41 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=33.4
Q ss_pred ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243 30 NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77 (185)
Q Consensus 30 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 77 (185)
..++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455556677888888888888765 3435566788888888887764
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.11 E-value=5 Score=24.15 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.0
Q ss_pred hHhHHHHHHh
Q 039243 138 VLAGYASGTI 147 (185)
Q Consensus 138 ~~~~~~~~~~ 147 (185)
++.+++++++
T Consensus 13 Iv~gvi~gil 22 (79)
T 2knc_B 13 VLLSVMGAIL 22 (79)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3344444433
No 175
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=34.82 E-value=31 Score=17.93 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.6
Q ss_pred HhHHHHH
Q 039243 139 LAGYASG 145 (185)
Q Consensus 139 ~~~~~~~ 145 (185)
+.+++++
T Consensus 13 v~gvi~~ 19 (43)
T 2k9j_B 13 LLSVMGA 19 (43)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 176
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=32.35 E-value=18 Score=27.81 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=3.8
Q ss_pred hccccce
Q 039243 157 CTRKYEW 163 (185)
Q Consensus 157 ~~~~~~w 163 (185)
+.+|++|
T Consensus 332 ~fkrk~W 338 (339)
T 4ev6_A 332 IFRRSGW 338 (339)
T ss_dssp HHHTTTC
T ss_pred HHHHcCC
Confidence 3355666
No 177
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=29.68 E-value=43 Score=17.04 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=9.5
Q ss_pred hhHhHHHHHHhhhhhhhhhh
Q 039243 137 IVLAGYASGTIIGVVLGYIF 156 (185)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (185)
..+++.++++.+..++.++|
T Consensus 10 LWlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 10 LWIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhhhhhheeeEEE
Confidence 34455555544444444443
No 178
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=29.37 E-value=37 Score=16.73 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.3
Q ss_pred hhhccc
Q 039243 155 IFCTRK 160 (185)
Q Consensus 155 ~~~~~~ 160 (185)
.|+.|+
T Consensus 26 tflywr 31 (40)
T 2l9u_A 26 TFLYWR 31 (40)
T ss_dssp HHHHHH
T ss_pred eeEEEc
Confidence 344333
No 179
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.53 E-value=77 Score=18.55 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=5.8
Q ss_pred HHHHHhhhhhhhhhhh
Q 039243 142 YASGTIIGVVLGYIFC 157 (185)
Q Consensus 142 ~~~~~~~~~~~~~~~~ 157 (185)
++++++++++.+++++
T Consensus 24 LifA~vLfi~GI~iil 39 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHH
Confidence 3333333333333333
Done!