BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039246
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WF5|VAMPL_ARATH Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana
GN=At1g33475 PE=2 SV=1
Length = 255
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 1 MISNPGLVFYACIAKGSIILGEFSSK-EPAISETLAQECIDKTPRHHLMFSHTVCKRTYA 59
M S V Y C+++ + I+ +++ + +E+LA C++KTP H + T K+T+
Sbjct: 1 MGSIQNTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFG 60
Query: 60 FLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS------ILNFDNVSNHCFQ 113
FL+ YF I D+ K FL +++ +E + S ++F NV + +
Sbjct: 61 FLMKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFSGSISFSNVQDQIVR 120
Query: 114 AHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRS 173
++ + L L S S DG S S+ APLLG K KKK R
Sbjct: 121 RLIASLEFDHTCLPLS------SPSIDGAEQSYASNSK-----APLLGRSNKQDKKKGRD 169
Query: 174 NGES--EAMSREFSDVNEEKKVDVCDDVTVQKNALYSGDHR----QKAKQIWKKHVWIVL 227
+ S E N+ V C + + + R Q ++ W++ V IVL
Sbjct: 170 HAHSLRGIEIEEHRKSNDRGNVTECSNASSESATYVPRRGRSGGSQSIERKWRRQVKIVL 229
Query: 228 GLDLFVCAVLFGIWLWVCRGFRC 250
+D+ +C L G+WL +C G C
Sbjct: 230 AIDIAICLTLLGVWLAICHGIEC 252
>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana
GN=VAMP727 PE=2 SV=1
Length = 240
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 41/264 (15%)
Query: 2 ISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL 61
+S GL+ Y+ +AKG+++L E + S T+A +C+ K P + ++++ T+ FL
Sbjct: 1 MSQKGLI-YSFVAKGTVVLAEHTPYSGNFS-TIAVQCLQKLPTNSSKYTYSCDGHTFNFL 58
Query: 62 INGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET------RSILNFDNVSNHCFQAH 115
++ + V+ DE + F FL RVK F++ +E R L ++ + F
Sbjct: 59 VDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDR 118
Query: 116 FDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNG 175
F + LD F + + S + SK L K K
Sbjct: 119 FSVAY----NLDREFGPILKEHMQYCMSHPEEMSK----------------LSKLKAQIT 158
Query: 176 ESEAMSREFSDVNEEKKVDVCDDVTV----QKNALYSGDHRQKAKQIWKKHVWI-VLGLD 230
E + + + N EK +D + + + +N + D Q+ + ++ +W+ L +
Sbjct: 159 EVKGIMMD----NIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMK 214
Query: 231 LFVCAVLFG----IWLWVCRGFRC 250
L V +F +W+ C GF+C
Sbjct: 215 LMVAGAVFSFILIVWVVACGGFKC 238
>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium
discoideum GN=vamp7B PE=3 SV=1
Length = 260
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ Y+ +A+GS +L EF+S T+ + +D P + S+ K + +L++ LT
Sbjct: 3 IIYSLVARGSSVLAEFTSTNGNFV-TITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLT 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y + DE+ + F FL+ VK+ F+ ++
Sbjct: 62 YLCMADEEFGRRIPFTFLDDVKNRFKSMY 90
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana
GN=VAMP725 PE=2 SV=2
Length = 285
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ Y+ +A+G++IL E++ + + AQ C+ K P + F++ T+ +L+ T
Sbjct: 71 LIYSFVARGTVILVEYTEFKGNFTAVAAQ-CLQKLPSSNNKFTYNCDGHTFNYLVENGFT 129
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y V+ E + + FL RVK F + +
Sbjct: 130 YCVVAVESVGRQIPMAFLERVKEDFNKRY 158
>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana
GN=VAMP722 PE=2 SV=2
Length = 221
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ Y+ +A+G++IL EF+ + + ++A +C+ K P + F++ T+ +L+ T
Sbjct: 6 LIYSFVARGTVILVEFTDFKGNFT-SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFT 64
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y V+ + + FL RVK F + +
Sbjct: 65 YCVVAVDSAGRQIPMAFLERVKEDFNKRY 93
>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis
thaliana GN=VAMP726 PE=3 SV=2
Length = 220
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ Y+ +A+G++IL E++ + + AQ C+ K P + F++ T+ +L + T
Sbjct: 6 LIYSFVARGTVILAEYTEFKGNFTSVAAQ-CLQKLPSSNNKFTYNCDGHTFNYLADNGFT 64
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y V+ E + FL RVK F + +
Sbjct: 65 YCVVVIESAGRQIPMAFLERVKEDFNKRY 93
>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana
GN=VAMP721 PE=1 SV=1
Length = 219
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ Y+ +A+G++IL EF+ + + ++A +C+ K P + F++ T+ +L+ T
Sbjct: 6 LIYSFVARGTVILVEFTDFKGNFT-SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFT 64
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y V+ + + FL RVK F + +
Sbjct: 65 YCVVAVDSAGRQIPMSFLERVKEDFNKRY 93
>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana
GN=VAMP724 PE=2 SV=2
Length = 222
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 10 YACIAKGSIILGE---FSSKEPAISETLAQECIDKTPRH-HLMFSHTVCKRTYAFLINGP 65
Y+ +A+G++IL E F+ P+I A +C+ K P + F++ T+ FL+
Sbjct: 8 YSFVARGTMILAEYTEFTGNFPSI----AAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDG 63
Query: 66 LTYFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
Y V+ + L K S FL RVK+ F++ +
Sbjct: 64 YAYCVVAKDSLSKQISIAFLERVKADFKKRY 94
>sp|Q9JHW5|VAMP7_RAT Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7
PE=1 SV=1
Length = 220
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + +++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN VK F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFGFLNEVKKRFQTTYGSRA 94
>sp|P70280|VAMP7_MOUSE Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1
SV=1
Length = 220
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + +++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN VK F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRA 94
>sp|Q17QI5|VAMP7_BOVIN Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2
SV=1
Length = 220
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + +++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN +K F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRA 94
>sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1
SV=3
Length = 220
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + +++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN +K F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRA 94
>sp|Q5ZL74|VAMP7_CHICK Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7
PE=2 SV=1
Length = 220
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + +++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRII 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN +K F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRA 94
>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana
GN=VAMP723 PE=2 SV=1
Length = 217
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+FY+ IA+G++IL EF+ + + AQ ++ P + F++ T+ L+ T
Sbjct: 6 LFYSFIARGTVILVEFTDFKGNFTSVAAQ-YLENLPSSNNKFTYNCDGHTFNDLVENGFT 64
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAF 92
Y V+ + + FL RVK F
Sbjct: 65 YCVVAVDSAGREIPMAFLERVKEDF 89
>sp|Q5RF94|VAMP7_PONAB Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2
SV=3
Length = 220
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
+ +A +A+G+ IL + + E + ++ + K P + ++ + ++ +
Sbjct: 3 ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYPHGNYLFHYICQDRIV 61
Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS 100
Y I D+D + +F FLN +K F+ + +R+
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRA 94
>sp|P57102|HAND2_DANRE Heart- and neural crest derivatives-expressed protein 2 OS=Danio
rerio GN=hand2 PE=2 SV=1
Length = 208
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 170 KKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIV 226
K NGE+EA EF +D EE++ +DV K++ S D + K + W +HVW +
Sbjct: 148 KDEQNGETEAFKAEFKKTDAKEERRKKEMNDVL--KSSGSSNDKKTKGRTGWPQHVWAL 204
>sp|Q9SIQ9|VA712_ARATH Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana
GN=VAMP712 PE=3 SV=1
Length = 219
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRH---HLMFSHTVCKRTYAFLI-- 62
+ YA +A+G+++L E S+ S T+A++ ++K P + H+ +S + Y F +
Sbjct: 3 ILYALVARGTVVLAELSTTSTNAS-TIAKQILEKIPGNGDSHVSYS----QDRYVFHVKR 57
Query: 63 NGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
LT + DED + F FL + F +
Sbjct: 58 TDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTY 91
>sp|Q90690|HAND2_CHICK Heart- and neural crest derivatives-expressed protein 2 OS=Gallus
gallus GN=HAND2 PE=2 SV=1
Length = 216
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 167 LKKKKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVW 224
L K NGE+EA E +DV EEK+ +++ K+ + S D + K + W +HVW
Sbjct: 153 LLPKDDQNGEAEAFKAEIKKTDVKEEKRKKELNEIL--KSTVSSSDKKTKGRTGWPQHVW 210
Query: 225 IV 226
+
Sbjct: 211 AL 212
>sp|P61295|HAND2_RAT Heart- and neural crest derivatives-expressed protein 2 OS=Rattus
norvegicus GN=Hand2 PE=2 SV=1
Length = 217
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 170 KKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIV 226
K NGE+EA E +DV EEK+ +++ K+ + S D + K + W +HVW +
Sbjct: 157 KDDQNGEAEAFKAEIKKTDVKEEKRKKELNEIL--KSTVSSNDKKTKGRTGWPQHVWAL 213
>sp|Q61039|HAND2_MOUSE Heart- and neural crest derivatives-expressed protein 2 OS=Mus
musculus GN=Hand2 PE=1 SV=3
Length = 217
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 170 KKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIV 226
K NGE+EA E +DV EEK+ +++ K+ + S D + K + W +HVW +
Sbjct: 157 KDDQNGEAEAFKAEIKKTDVKEEKRKKELNEIL--KSTVSSNDKKTKGRTGWPQHVWAL 213
>sp|P61296|HAND2_HUMAN Heart- and neural crest derivatives-expressed protein 2 OS=Homo
sapiens GN=HAND2 PE=1 SV=1
Length = 217
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 170 KKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIV 226
K NGE+EA E +DV EEK+ +++ K+ + S D + K + W +HVW +
Sbjct: 157 KDDQNGEAEAFKAEIKKTDVKEEKRKKELNEIL--KSTVSSNDKKTKGRTGWPQHVWAL 213
>sp|P48552|NRIP1_HUMAN Nuclear receptor-interacting protein 1 OS=Homo sapiens GN=NRIP1
PE=1 SV=2
Length = 1158
Score = 35.0 bits (79), Expect = 0.55, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 132 SSSRSGSKDGRS-SSVDSSKSRRTVLAPLLGEPCKGLKKKK-----RSNGESEAMSREFS 185
SS +G + G S S +++ RRTVL LLG P KG +KK R E R S
Sbjct: 688 SSQPTGPEPGLSGSEIENLLERRTVLQLLLGNPNKGKSEKKEKTPLRDESTQEHSERALS 747
Query: 186 D--VNEEKKVDVCDDVTV 201
+ + + K + CDD+ +
Sbjct: 748 EQILMVKIKSEPCDDLQI 765
>sp|P57101|HAND2_XENLA Heart- and neural crest derivatives-expressed protein 2 OS=Xenopus
laevis GN=hand2 PE=2 SV=1
Length = 210
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 170 KKRSNGESEAMSREF--SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIV 226
K NGE+EA E +DV EEK+ +++ K+ + S D + K + W +HVW +
Sbjct: 150 KDDQNGETEAFKAEIKKTDVKEEKRKKELNELL--KSTVCSNDKKTKGRTGWPQHVWAL 206
>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana
GN=VAMP711 PE=2 SV=2
Length = 219
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTP 43
+ YA +A+G+++L EF++ S T+A++ ++K P
Sbjct: 3 ILYALVARGTVVLSEFTATSTNAS-TIAKQILEKVP 37
>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana
GN=VAMP713 PE=2 SV=1
Length = 221
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGP-- 65
+ +A +A+G+++L EFS+ S +++++ ++K P + + + Y F +
Sbjct: 3 IIFALVARGTVVLSEFSATSTNAS-SISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61
Query: 66 LTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAH-FDAVFCEIM 124
LT + DE + F FL+ + F + + R+I H QA+ + F ++
Sbjct: 62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTY-GRAI--------HSAQAYSMNDEFSRVL 112
Query: 125 GLDLGFSSSSRSGSKDGR 142
+ F S+ + + R
Sbjct: 113 SQQMEFYSNDPNADRMSR 130
>sp|P55937|GOGA3_MOUSE Golgin subfamily A member 3 OS=Mus musculus GN=Golga3 PE=1 SV=3
Length = 1487
Score = 32.0 bits (71), Expect = 4.5, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 136 SGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEK 191
+G R S+ SS S + LA E + LK K+R G+ EA+S E S +EK
Sbjct: 376 NGEVRSRRDSICSSVSMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEK 431
>sp|O75363|BCAS1_HUMAN Breast carcinoma-amplified sequence 1 OS=Homo sapiens GN=BCAS1 PE=1
SV=2
Length = 584
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 140 DGRSSSVDSSKSRRTVLAPLLGEPC-------KGLKKKKRSNGESEAMSREFSDVNEEKK 192
+G+ SS +S S + P EP +G K K+S E M+++ S+ E K+
Sbjct: 465 NGKDSSCQTSDSTEKTITPPEPEPTGAPQKGKEGSSKDKKSAAE---MNKQKSNKQEAKE 521
Query: 193 VDVC-DDVTVQKNALYSGDHRQK 214
C + TV N+L +GD QK
Sbjct: 522 PAQCTEQATVDTNSLQNGDKLQK 544
>sp|Q8TEU7|RPGF6_HUMAN Rap guanine nucleotide exchange factor 6 OS=Homo sapiens GN=RAPGEF6
PE=1 SV=2
Length = 1601
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 EDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQ-AHFDAVFCEIMGLDLG 129
ED+ E+FW + + + ++ + I +F ++ HC + +F+++F I GL+L
Sbjct: 904 EDIVNQETFWVASEILTEANQLKRMKIIKHFIKIALHCRECKNFNSMFAIISGLNLA 960
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,977,967
Number of Sequences: 539616
Number of extensions: 3775115
Number of successful extensions: 11513
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11456
Number of HSP's gapped (non-prelim): 64
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)