Query 039246
Match_columns 253
No_of_seqs 137 out of 744
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 2.6E-60 5.6E-65 390.9 14.0 197 6-252 1-217 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 99.9 8.8E-26 1.9E-30 189.9 13.3 170 7-224 1-198 (216)
3 PF13774 Longin: Regulated-SNA 99.8 4.8E-20 1E-24 135.7 10.9 81 34-118 1-82 (83)
4 PF00957 Synaptobrevin: Synapt 99.7 4.1E-17 8.9E-22 121.7 2.4 68 164-246 3-89 (89)
5 KOG0860 Synaptobrevin/VAMP-lik 99.6 8.4E-17 1.8E-21 123.4 3.0 60 184-244 35-113 (116)
6 KOG0861 SNARE protein YKT6, sy 99.5 2E-14 4.2E-19 117.2 7.6 156 6-213 1-190 (198)
7 COG5143 SNC1 Synaptobrevin/VAM 99.3 2.1E-12 4.5E-17 107.7 7.1 165 6-221 1-190 (190)
8 PF04086 SRP-alpha_N: Signal r 94.9 0.054 1.2E-06 48.3 5.7 66 32-99 5-72 (279)
9 KOG0781 Signal recognition par 90.8 1.4 3E-05 42.6 8.5 88 8-97 3-95 (587)
10 PF01217 Clat_adaptor_s: Clath 85.5 16 0.00035 28.8 10.9 50 48-97 47-96 (141)
11 PF03908 Sec20: Sec20; InterP 83.8 2 4.3E-05 31.8 4.2 30 212-241 60-89 (92)
12 PF04099 Sybindin: Sybindin-li 76.9 36 0.00079 27.2 10.6 85 36-125 46-141 (142)
13 PF09426 Nyv1_N: Vacuolar R-SN 76.7 6.5 0.00014 31.4 5.1 37 53-89 70-109 (141)
14 COG5143 SNC1 Synaptobrevin/VAM 76.3 4.5 9.8E-05 34.2 4.4 54 185-239 101-173 (190)
15 PF06789 UPF0258: Uncharacteri 72.9 1.1 2.4E-05 36.4 -0.0 36 206-245 120-155 (159)
16 KOG0938 Adaptor complexes medi 71.0 53 0.0011 30.5 10.1 86 9-97 5-93 (446)
17 PF03302 VSP: Giardia variant- 63.3 4.4 9.5E-05 38.2 1.8 14 234-247 382-395 (397)
18 PF13800 Sigma_reg_N: Sigma fa 63.2 12 0.00027 27.6 3.9 13 214-226 5-17 (96)
19 PF09753 Use1: Membrane fusion 62.1 4.5 9.8E-05 35.5 1.6 7 210-216 214-220 (251)
20 KOG0811 SNARE protein PEP12/VA 56.8 4.8 0.0001 36.0 0.8 11 185-195 187-197 (269)
21 PF07204 Orthoreo_P10: Orthore 55.8 7.6 0.00017 29.0 1.6 22 224-245 42-63 (98)
22 PF09680 Tiny_TM_bacill: Prote 55.6 9.5 0.00021 21.2 1.5 10 232-241 10-19 (24)
23 PF04628 Sedlin_N: Sedlin, N-t 52.2 1.1E+02 0.0024 23.9 9.1 109 12-125 1-131 (132)
24 PF05568 ASFV_J13L: African sw 51.5 21 0.00046 29.0 3.6 23 224-246 31-53 (189)
25 PF13800 Sigma_reg_N: Sigma fa 51.2 25 0.00054 26.0 3.8 29 210-238 4-32 (96)
26 PF13124 DUF3963: Protein of u 50.6 26 0.00057 21.4 3.0 20 217-236 17-36 (40)
27 PF14575 EphA2_TM: Ephrin type 49.1 23 0.00049 25.3 3.1 21 229-250 7-27 (75)
28 KOG1326 Membrane-associated pr 49.0 20 0.00044 37.5 3.9 32 211-242 1058-1089(1105)
29 KOG0810 SNARE protein Syntaxin 47.9 11 0.00023 34.3 1.5 27 210-238 259-285 (297)
30 TIGR01732 tiny_TM_bacill conse 47.5 17 0.00037 20.6 1.8 10 232-241 12-21 (26)
31 COG4327 Predicted membrane pro 46.1 43 0.00093 25.1 4.2 33 210-242 5-37 (101)
32 COG1969 HyaC Ni,Fe-hydrogenase 43.4 20 0.00043 30.7 2.4 36 213-248 97-150 (227)
33 PF02439 Adeno_E3_CR2: Adenovi 43.1 34 0.00075 21.2 2.8 7 228-234 8-14 (38)
34 PTZ00382 Variant-specific surf 42.5 13 0.00028 27.9 1.1 14 234-247 81-94 (96)
35 PF01102 Glycophorin_A: Glycop 42.3 31 0.00067 27.1 3.2 17 225-241 66-82 (122)
36 KOG0811 SNARE protein PEP12/VA 40.9 34 0.00074 30.6 3.6 9 210-218 227-235 (269)
37 TIGR01478 STEVOR variant surfa 40.1 26 0.00056 31.6 2.7 17 227-243 267-283 (295)
38 PF13908 Shisa: Wnt and FGF in 39.7 15 0.00032 30.5 1.1 18 228-245 80-97 (179)
39 PHA02844 putative transmembran 39.6 33 0.00072 24.5 2.7 11 187-197 24-34 (75)
40 PRK11901 hypothetical protein; 39.5 30 0.00064 31.8 3.0 23 224-246 37-59 (327)
41 PTZ00370 STEVOR; Provisional 38.6 28 0.00061 31.4 2.7 17 227-243 263-279 (296)
42 PF13937 DUF4212: Domain of un 38.0 69 0.0015 23.3 4.2 26 215-240 3-28 (81)
43 PF07172 GRP: Glycine rich pro 37.9 32 0.00069 25.8 2.6 16 224-239 4-19 (95)
44 KOG3385 V-SNARE [Intracellular 37.6 18 0.0004 28.1 1.2 15 226-240 101-115 (118)
45 PF10717 ODV-E18: Occlusion-de 37.4 42 0.00091 24.6 3.0 9 225-233 28-36 (85)
46 KOG2740 Clathrin-associated pr 36.8 1.1E+02 0.0023 28.8 6.2 38 60-97 59-96 (418)
47 PF00957 Synaptobrevin: Synapt 36.8 24 0.00052 25.6 1.7 53 185-240 34-86 (89)
48 PHA02650 hypothetical protein; 36.7 38 0.00082 24.5 2.6 9 188-196 25-33 (81)
49 PHA03240 envelope glycoprotein 36.6 33 0.00072 29.7 2.7 6 214-219 210-215 (258)
50 PF12751 Vac7: Vacuolar segreg 35.7 36 0.00078 32.0 3.0 28 214-241 293-320 (387)
51 PF14004 DUF4227: Protein of u 35.4 49 0.0011 23.5 3.0 24 218-241 2-25 (71)
52 PF01708 Gemini_mov: Geminivir 34.3 20 0.00044 26.6 1.0 27 220-246 34-60 (91)
53 PF15339 Afaf: Acrosome format 34.0 45 0.00098 27.9 3.0 23 224-247 131-153 (200)
54 PF02038 ATP1G1_PLM_MAT8: ATP1 33.9 71 0.0015 21.1 3.4 30 220-250 11-40 (50)
55 PF07296 TraP: TraP protein; 32.8 93 0.002 26.4 4.7 33 210-242 18-50 (202)
56 PHA01811 hypothetical protein 32.6 49 0.0011 23.0 2.6 19 46-64 4-22 (78)
57 PF10717 ODV-E18: Occlusion-de 32.5 55 0.0012 24.0 2.9 17 226-242 26-42 (85)
58 PF05399 EVI2A: Ectropic viral 32.4 37 0.00079 29.3 2.3 10 115-124 38-47 (227)
59 PF01601 Corona_S2: Coronaviru 32.4 15 0.00032 36.4 0.0 26 18-44 340-365 (610)
60 PHA02975 hypothetical protein; 32.3 50 0.0011 23.2 2.6 14 225-238 47-60 (69)
61 PF03607 DCX: Doublecortin; I 31.4 58 0.0013 21.9 2.8 49 27-76 8-59 (60)
62 PF05393 Hum_adeno_E3A: Human 30.7 50 0.0011 24.5 2.5 6 240-245 49-54 (94)
63 PHA03054 IMV membrane protein; 30.6 56 0.0012 23.1 2.6 10 187-196 24-33 (72)
64 PF10669 Phage_Gp23: Protein g 30.4 61 0.0013 24.5 3.0 8 223-230 14-21 (121)
65 PRK10299 PhoPQ regulatory prot 30.3 67 0.0015 20.8 2.7 25 221-245 2-28 (47)
66 PF15102 TMEM154: TMEM154 prot 29.8 20 0.00044 29.0 0.4 11 240-250 72-82 (146)
67 PRK14125 cell division suppres 29.4 65 0.0014 24.4 3.1 15 217-231 2-16 (103)
68 PHA02819 hypothetical protein; 29.2 63 0.0014 22.9 2.7 10 187-196 24-33 (71)
69 PF06024 DUF912: Nucleopolyhed 29.0 28 0.00061 26.2 1.0 7 234-240 75-81 (101)
70 PF03164 Mon1: Trafficking pro 28.7 3.1E+02 0.0068 25.9 8.2 65 32-96 38-103 (415)
71 PF10031 DUF2273: Small integr 28.2 86 0.0019 20.6 3.1 11 219-229 3-13 (51)
72 PF08999 SP_C-Propep: Surfacta 28.1 84 0.0018 22.9 3.2 7 191-197 6-12 (93)
73 PF12575 DUF3753: Protein of u 28.0 70 0.0015 22.8 2.8 13 185-197 22-34 (72)
74 PF12669 P12: Virus attachment 27.7 54 0.0012 22.2 2.1 8 232-239 8-15 (58)
75 PRK13739 conjugal transfer pro 27.6 1.3E+02 0.0029 25.4 4.8 43 199-242 7-50 (198)
76 PF13980 UPF0370: Uncharacteri 27.4 67 0.0015 21.9 2.5 13 219-231 3-15 (63)
77 PF02009 Rifin_STEVOR: Rifin/s 26.9 56 0.0012 29.7 2.7 6 18-23 19-24 (299)
78 PF13974 YebO: YebO-like prote 26.6 45 0.00098 24.2 1.7 16 229-244 3-18 (80)
79 PF00558 Vpu: Vpu protein; In 25.8 80 0.0017 23.0 2.8 19 226-244 7-26 (81)
80 PF14914 LRRC37AB_C: LRRC37A/B 25.7 65 0.0014 26.2 2.6 16 222-237 118-133 (154)
81 PF05545 FixQ: Cbb3-type cytoc 25.6 1.4E+02 0.003 19.1 3.7 21 222-242 9-29 (49)
82 PF08113 CoxIIa: Cytochrome c 25.5 1.1E+02 0.0024 18.4 2.9 17 228-244 10-26 (34)
83 PF02937 COX6C: Cytochrome c o 25.4 1.2E+02 0.0025 21.7 3.6 24 218-241 12-35 (73)
84 PF10039 DUF2275: Predicted in 25.4 86 0.0019 27.2 3.4 25 216-241 27-51 (218)
85 PF04999 FtsL: Cell division p 25.1 1.7E+02 0.0036 21.4 4.6 27 215-241 6-32 (97)
86 cd01617 DCX Ubiquitin-like dom 23.9 1.2E+02 0.0027 21.5 3.6 50 27-77 25-79 (80)
87 PF12279 DUF3619: Protein of u 23.6 1.1E+02 0.0023 24.4 3.4 22 216-237 67-88 (131)
88 PF01034 Syndecan: Syndecan do 23.3 28 0.0006 24.2 0.1 22 224-245 10-31 (64)
89 COG4640 Predicted membrane pro 22.6 86 0.0019 29.7 3.1 24 223-246 49-72 (465)
90 PF12877 DUF3827: Domain of un 22.5 43 0.00093 33.6 1.2 16 110-125 153-168 (684)
91 PF08374 Protocadherin: Protoc 22.4 27 0.00058 30.2 -0.2 8 222-229 36-43 (221)
92 PF06422 PDR_CDR: CDR ABC tran 22.2 98 0.0021 23.3 2.9 19 219-237 48-66 (103)
93 KOG1666 V-SNARE [Intracellular 22.1 1.7E+02 0.0037 25.3 4.6 11 187-197 137-147 (220)
94 PRK10381 LPS O-antigen length 21.9 1.1E+02 0.0023 28.7 3.7 20 217-236 34-53 (377)
95 COG5547 Small integral membran 21.5 1.3E+02 0.0027 20.6 2.9 18 219-236 3-20 (62)
96 PF01102 Glycophorin_A: Glycop 20.9 1E+02 0.0022 24.3 2.8 22 224-245 68-89 (122)
97 PRK13664 hypothetical protein; 20.8 1.4E+02 0.0031 20.3 3.1 11 219-229 3-13 (62)
98 KOG3658 Tumor necrosis factor- 20.1 1E+02 0.0022 31.2 3.2 29 218-246 677-705 (764)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-60 Score=390.90 Aligned_cols=197 Identities=21% Similarity=0.372 Sum_probs=186.3
Q ss_pred ceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246 6 GLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRH-HLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF 84 (253)
Q Consensus 6 m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~-~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F 84 (253)
|+|+|++||||++|||||++.+||| .+++.++|+|||++ ++|.||..|+|+|||+.+||++|+||||+++++++||+|
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf-~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaF 79 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNF-SSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAF 79 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCH-HHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHH
Confidence 7899999999999999999999999 99999999999976 779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCc
Q 039246 85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPC 164 (253)
Q Consensus 85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 164 (253)
|++|+++|.+.|+. .++++.+|+||++|+++|++.|++ |+++|.. |
T Consensus 80 Le~Ik~~F~k~YG~----~a~ta~AysmN~EFs~vL~qqm~y---~s~~p~i---------------------------d 125 (217)
T KOG0859|consen 80 LERIKEDFKKRYGG----GAHTAVAYSMNKEFSSVLKQQMQY---CSEHPEI---------------------------S 125 (217)
T ss_pred HHHHHHHHHHHhcc----chhHHHHhHhHHHHHHHHHHHHHH---HHcCcch---------------------------h
Confidence 99999999999984 377899999999999999999998 5556654 8
Q ss_pred hhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhhH
Q 039246 165 KGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVWI 225 (253)
Q Consensus 165 k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K~ 225 (253)
|+.++| .||+|||+||++| |++|+.++ |+ +++|+++|+|||+|+|+
T Consensus 126 ~lskvk--------------aqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr-~q~r~~~r~mw~~n~kl 190 (217)
T KOG0859|consen 126 KLAKVK--------------AQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFR-TQGRKLRRKMWFQNMKL 190 (217)
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHH-HHHHHHHHHHHHhccce
Confidence 999976 9999999999999 99999998 99 59999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccc
Q 039246 226 VLGLDLFVCAVLFGIWLWVCRGFRCIN 252 (253)
Q Consensus 226 ~i~i~~vv~~vi~~i~~~~C~Gf~C~~ 252 (253)
.+++.++++++||+||+.+||||.|-+
T Consensus 191 ~~iv~~~~~~~iyiiv~~~CgG~~~~s 217 (217)
T KOG0859|consen 191 KLIVLGVSISLIYIIVARRCGGFTCPS 217 (217)
T ss_pred ehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999854
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.8e-26 Score=189.91 Aligned_cols=170 Identities=14% Similarity=0.212 Sum_probs=135.1
Q ss_pred eeEEEEEEe--CCeEEEeecC---CCCCh-h--HHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCC
Q 039246 7 LVFYACIAK--GSIILGEFSS---KEPAI-S--ETLAQECIDKTPRH-HLMFSHTVCKRTYAFLINGPLTYFVIHDEDLH 77 (253)
Q Consensus 7 ~I~Ya~Var--g~~iLae~s~---~~~nf-~--~~ia~~iL~kip~~-~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~ 77 (253)
+|++++|+| +++|||...+ .+|+. . .+.++.+++++.+. +.+.|.+.+.|+|||++++|++|+|+||++||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 478999999 8999998654 23332 1 78899999999876 89999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCccccccccc
Q 039246 78 KGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLA 157 (253)
Q Consensus 78 ~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (253)
+++||+||+||.++|.+.|+.. -.-+...||++. +|+++|++.-++ || |+++.
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~--~~~~~~RPY~Fi-eFD~~IQk~Kk~---yn-d~r~~-------------------- 133 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKN--IIQPASRPYAFI-EFDTFIQKTKKR---YN-DTRSQ-------------------- 133 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--cCCccCCCeeEE-ehhHHHHHHHHH---hc-CcHHH--------------------
Confidence 9999999999999999999853 111237899998 899999999998 65 55431
Q ss_pred CCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHH
Q 039246 158 PLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQI 218 (253)
Q Consensus 158 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~m 218 (253)
+.+.++ +.++.+|+.||++| +..|...+ .+ .+|+.+.++.
T Consensus 134 ------~n~~~~--------------n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~-~~a~~in~~s 192 (216)
T KOG0862|consen 134 ------RNLLKL--------------NQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYP-KTAKGINRKS 192 (216)
T ss_pred ------HHHHHH--------------HHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhH-HHHHHHHHHH
Confidence 334442 48889999999999 22233333 44 4788888888
Q ss_pred HHhhhh
Q 039246 219 WKKHVW 224 (253)
Q Consensus 219 ww~~~K 224 (253)
-|.++.
T Consensus 193 l~~~~a 198 (216)
T KOG0862|consen 193 LIRKYA 198 (216)
T ss_pred HHHHHH
Confidence 777776
No 3
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.83 E-value=4.8e-20 Score=135.74 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=72.6
Q ss_pred HHHHHHhcCCCCC-CeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCcccccc
Q 039246 34 LAQECIDKTPRHH-LMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCF 112 (253)
Q Consensus 34 ia~~iL~kip~~~-~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l 112 (253)
+|++||+++|+.+ +|.+++.++|+|||+++||++||||||+++|+++||.||++|+++|.++|+. .++.++.||++
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~---~~~~~a~~~~~ 77 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGG---DQIKSASPYSF 77 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTT---TTTTTSTTTTT
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCc---chhcccCCcch
Confidence 5899999999655 8999999999999999999999999999999999999999999999999973 36778889999
Q ss_pred ccchHH
Q 039246 113 QAHFDA 118 (253)
Q Consensus 113 ~~~F~~ 118 (253)
.+|++
T Consensus 78 -~~F~~ 82 (83)
T PF13774_consen 78 -KEFDS 82 (83)
T ss_dssp -HHHHH
T ss_pred -hhcCC
Confidence 78886
No 4
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.65 E-value=4.1e-17 Score=121.74 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=62.5
Q ss_pred chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW 224 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K 224 (253)
||+.+++ +++++|+++|.+| |++|+.+| |+ ++|++++|+|||+++|
T Consensus 3 dkl~~i~--------------~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~-k~a~~l~r~~~~~~~k 67 (89)
T PF00957_consen 3 DKLEQIQ--------------EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK-KNAKKLKRKMWWRNYK 67 (89)
T ss_dssp HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHH--------------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 7888865 9999999999999 88899988 99 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 039246 225 IVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 225 ~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
+++++++++++++++|++.+||
T Consensus 68 ~~~i~~~iv~~~~~~i~~~~~g 89 (89)
T PF00957_consen 68 LYIIIIIIVIIIILIIIIVICG 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhHHhhhhhhhhHHHHHHhC
Confidence 9999999999999999999995
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.4e-17 Score=123.35 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=55.0
Q ss_pred ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 039246 184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWV 244 (253)
Q Consensus 184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~~~ 244 (253)
++||++|++||.+| ++.|+..| |+ ++|++|||+|||+|+|+++++++|+++++++|++.+
T Consensus 35 q~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~-~~A~klkrk~wWkn~Km~~il~~v~~i~l~iiii~~ 113 (116)
T KOG0860|consen 35 QAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE-KTAVKLKRKMWWKNCKMRIILGLVIIILLVVIIIYI 113 (116)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999 88999988 99 699999999999999999999999988888877655
No 6
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2e-14 Score=117.24 Aligned_cols=156 Identities=11% Similarity=0.078 Sum_probs=118.7
Q ss_pred ceeEEEEEEeC----CeEEEeecC------CC----CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEe-CCEEEEE
Q 039246 6 GLVFYACIAKG----SIILGEFSS------KE----PAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLIN-GPLTYFV 70 (253)
Q Consensus 6 m~I~Ya~Varg----~~iLae~s~------~~----~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~-dgi~ylc 70 (253)
|.|++..|-+- ..+|++.++ ++ +.|+..+++.+.++.+|+ .+.+++.+.|..|.... ||+++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~ 79 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVL 79 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEE
Confidence 67888888773 366766443 11 345467889999999985 59999999999999996 5999999
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcc
Q 039246 71 IHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSK 150 (253)
Q Consensus 71 itd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (253)
++|.+||.|+||.+|++|.++|..... ..+|+...+.. .-.|.|...+.. | +||.+.
T Consensus 80 ~~D~eYP~rvA~tLL~kvld~~~~k~~---~~~W~~~~~~~---~~~~~L~~~l~k---y-qdP~ea------------- 136 (198)
T KOG0861|consen 80 IADDEYPVRVAFTLLNKVLDEFTTKVP---ATQWPVGETAD---LSYPYLDTLLSK---Y-QDPAEA------------- 136 (198)
T ss_pred EecCcCchhHHHHHHHHHHHHHhhcCc---ccccCcCCCcC---CCchhHHHHHHH---h-cChhhh-------------
Confidence 999999999999999999999976654 25787332222 346788888886 6 477663
Q ss_pred cccccccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccch
Q 039246 151 SRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDH 211 (253)
Q Consensus 151 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a 211 (253)
|++.++ |+|++|+|.|+... +++|..++ |+ ++|
T Consensus 137 -------------d~l~kv--------------Q~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfY-KsA 188 (198)
T KOG0861|consen 137 -------------DPLLKV--------------QNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFY-KSA 188 (198)
T ss_pred -------------ChHHHH--------------HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHH-HHH
Confidence 888885 59999999998765 66676666 77 366
Q ss_pred HH
Q 039246 212 RQ 213 (253)
Q Consensus 212 ~~ 213 (253)
++
T Consensus 189 KK 190 (198)
T KOG0861|consen 189 KK 190 (198)
T ss_pred hh
Confidence 54
No 7
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.34 E-value=2.1e-12 Score=107.67 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=111.5
Q ss_pred ceeEEEEEEeCC--eEEEee-cCCCCChh-HHHHHHHHhcCC-CCCCeeEEEeCCeEEEEEEeC-CEEEEEEEcCCCCcc
Q 039246 6 GLVFYACIAKGS--IILGEF-SSKEPAIS-ETLAQECIDKTP-RHHLMFSHTVCKRTYAFLING-PLTYFVIHDEDLHKG 79 (253)
Q Consensus 6 m~I~Ya~Varg~--~iLae~-s~~~~nf~-~~ia~~iL~kip-~~~~k~s~~~~~~~fh~l~~d-gi~ylcitd~~~~~~ 79 (253)
|.++|..+..|. .+|++- +..+..|- ...+..+|.++- ...++.+.+.++|.|||+..+ |++|.|+++..+|++
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~ 80 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK 80 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence 345565555553 444432 22222221 455677777764 334578889999999999975 999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 039246 80 ESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPL 159 (253)
Q Consensus 80 iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 159 (253)
+||+.|+++..+|...+... ...+...++.+ .+|++++++ . |+ +|...
T Consensus 81 la~~~~~~~~~~~~~s~~~~--~~~d~~~~~~~-~~~d~~~e~--~----y~-d~s~~---------------------- 128 (190)
T COG5143 81 LAYGYLNSIATEFLKSSALE--QLIDDTVGIMR-VNIDKVIEK--G----YR-DPSIQ---------------------- 128 (190)
T ss_pred hhhHHHHhhccHhhhhhhHh--hcccCccchhh-hhHHHHHHh--h----cC-Cchhh----------------------
Confidence 99999999999998877632 11222334444 378888887 2 33 44331
Q ss_pred CCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHH
Q 039246 160 LGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWK 220 (253)
Q Consensus 160 ~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww 220 (253)
|++.++ +.+++++|.+|.+| ++.|..++ |+ ++|++.+..+||
T Consensus 129 ----D~~d~l--------------~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~-k~akk~n~~~~~ 189 (190)
T COG5143 129 ----DKLDQL--------------QQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFP-KSAKKSNLCCLI 189 (190)
T ss_pred ----hHHHHH--------------HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhee
Confidence 666664 48889999888888 55566655 66 477777777777
Q ss_pred h
Q 039246 221 K 221 (253)
Q Consensus 221 ~ 221 (253)
+
T Consensus 190 ~ 190 (190)
T COG5143 190 N 190 (190)
T ss_pred C
Confidence 4
No 8
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.90 E-value=0.054 Score=48.29 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhhhh
Q 039246 32 ETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETR 99 (253)
Q Consensus 32 ~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~~~ 99 (253)
..+++.+|-.=.. +..+|.+++|..+|...| +++|++|-..-+.-.-.=.||++|+..|...|...
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 3455555533222 345799999999999976 69999999888876666689999999999999854
No 9
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=1.4 Score=42.55 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred eEEEEEEeCCeEEEeecCCCCChh---HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHH
Q 039246 8 VFYACIAKGSIILGEFSSKEPAIS---ETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESF 82 (253)
Q Consensus 8 I~Ya~Varg~~iLae~s~~~~nf~---~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF 82 (253)
=.++.+.+|++||..|.....+|. ..+++.+|-.=. .+-.+++.+.|+..|-.+| +++|+|+-.+-..-.-+=
T Consensus 3 d~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er--~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~ 80 (587)
T KOG0781|consen 3 DQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER--GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVD 80 (587)
T ss_pred ceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh--cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHH
Confidence 357889999999999987665551 344444443321 1223378888888887764 799999998887777777
Q ss_pred HHHHHHHHHHHHHhh
Q 039246 83 WFLNRVKSAFEEIFE 97 (253)
Q Consensus 83 ~FL~dI~~~F~~~~~ 97 (253)
.+|+++.+.|...|.
T Consensus 81 ~ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 81 KLLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999985
No 10
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=85.52 E-value=16 Score=28.82 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=44.5
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 48 MFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 48 k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
--....+++.+-|...+++.|+++++.+...-..+.||..+-+-+...++
T Consensus 47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 34678899999999899999999999999999999999999998888775
No 11
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=83.76 E-value=2 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.463 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 212 RQKAKQIWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 212 ~~l~r~mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
+++.|+.|.-+.-+++.+.+++++++||+|
T Consensus 60 ~~l~r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 60 KKLERRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777888888888888888876
No 12
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=76.93 E-value=36 Score=27.20 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=46.2
Q ss_pred HHHHhcCCC---------CCCeeEEEeCCeEEEEEEe-CCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh-hhccccc
Q 039246 36 QECIDKTPR---------HHLMFSHTVCKRTYAFLIN-GPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE-TRSILNF 104 (253)
Q Consensus 36 ~~iL~kip~---------~~~k~s~~~~~~~fh~l~~-dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~-~~~~~~~ 104 (253)
+.+..++.| ..+-.+++.+.|..|++-. .|+-|+++||...+. ..-.++..+.+-|...-- ++. .
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPf---y 121 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPF---Y 121 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TT---S
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCC---C
Confidence 455566644 2457888999999999985 899999999999864 233345555544443221 110 0
Q ss_pred CCccccccccchHHHHHHHHh
Q 039246 105 DNVSNHCFQAHFDAVFCEIMG 125 (253)
Q Consensus 105 ~~~~~~~l~~~F~~~L~~~m~ 125 (253)
....|-. +..|+..|.+.++
T Consensus 122 ~~~~pI~-~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 122 SLEMPIR-CELFDTKLDQYVK 141 (142)
T ss_dssp -TTS-----HHHHHHHHHHHH
T ss_pred CCCCcEe-hHHHHHHHHHHHh
Confidence 0111221 3568888887765
No 13
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=76.74 E-value=6.5 Score=31.35 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=29.7
Q ss_pred eCCeEEEEEE---eCCEEEEEEEcCCCCcchHHHHHHHHH
Q 039246 53 VCKRTYAFLI---NGPLTYFVIHDEDLHKGESFWFLNRVK 89 (253)
Q Consensus 53 ~~~~~fh~l~---~dgi~ylcitd~~~~~~iaF~FL~dI~ 89 (253)
.|+|-=.|-. +++-+|+|++..+.|+-+|...|.|++
T Consensus 70 IDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK 109 (141)
T PF09426_consen 70 IDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELK 109 (141)
T ss_dssp SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHT
T ss_pred ccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhc
Confidence 3899866666 478999999999999999999999996
No 14
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=76.26 E-value=4.5 Score=34.22 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=40.4
Q ss_pred cccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 039246 185 SDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFG 239 (253)
Q Consensus 185 ~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~ 239 (253)
..++..+.+|..| .++++.+. ++ +-..+...+||||.-|+=.+++....+..-.
T Consensus 101 ~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K-~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s 173 (190)
T COG5143 101 QLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETK-RVLNKNIEKVLYRDEKLDLLVDLSSILLLSS 173 (190)
T ss_pred hcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 5666777777777 45666666 88 7899999999999999888777766554433
No 15
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=72.87 E-value=1.1 Score=36.37 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=25.3
Q ss_pred ccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 039246 206 LYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 206 f~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~~~C 245 (253)
.+ +.-++.||.-. .|+..+|+++||.+|++|++-+|
T Consensus 120 LK-kKEae~kr~K~---Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 120 LK-KKEAELKRSKV---CKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HH-HHHHHHHHHHH---HHHHHHHHHHHHHheEEEEEEEE
Confidence 44 35555555432 37888888889888888887777
No 16
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.03 E-value=53 Score=30.51 Aligned_cols=86 Identities=13% Similarity=0.250 Sum_probs=63.9
Q ss_pred EEEEEEeCCeEEEee-c-CCCCChhHHHHH-HHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHH
Q 039246 9 FYACIAKGSIILGEF-S-SKEPAISETLAQ-ECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFL 85 (253)
Q Consensus 9 ~Ya~Varg~~iLae~-s-~~~~nf~~~ia~-~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL 85 (253)
+|..=.||.++++-. . +-.++. .++.+ .++....-.. -..+.++-.|||...+++-.++||..+......|.||
T Consensus 5 lfi~n~rGevlink~fr~dlkrs~-~diFRv~vi~n~d~r~--PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl 81 (446)
T KOG0938|consen 5 LFIYNLRGEVLINKTFRDDLKRSI-VDIFRVQVINNLDVRS--PVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFL 81 (446)
T ss_pred EEEEeccCcEEEehhhhhhhhhhH-HHHHHHhhhhccccCC--CeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHH
Confidence 344456788888863 3 345666 55555 3444433111 2567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 039246 86 NRVKSAFEEIFE 97 (253)
Q Consensus 86 ~dI~~~F~~~~~ 97 (253)
.++-+-+..-|+
T Consensus 82 ~kl~avm~aYfg 93 (446)
T KOG0938|consen 82 YKLDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHHHhc
Confidence 999999988776
No 17
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=63.33 E-value=4.4 Score=38.23 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCC
Q 039246 234 CAVLFGIWLWVCRG 247 (253)
Q Consensus 234 ~~vi~~i~~~~C~G 247 (253)
-+|-|+.||++|+|
T Consensus 382 glvGfLcWwf~crg 395 (397)
T PF03302_consen 382 GLVGFLCWWFICRG 395 (397)
T ss_pred HHHHHHhhheeecc
Confidence 35678899999987
No 18
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=63.15 E-value=12 Score=27.64 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=5.9
Q ss_pred HHHHHHHhhhhHH
Q 039246 214 KAKQIWKKHVWIV 226 (253)
Q Consensus 214 l~r~mww~~~K~~ 226 (253)
+|+.-|+...|++
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455543
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=62.05 E-value=4.5 Score=35.52 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=2.8
Q ss_pred chHHHHH
Q 039246 210 DHRQKAK 216 (253)
Q Consensus 210 ~a~~l~r 216 (253)
.+.+|+.
T Consensus 214 ~~~rl~~ 220 (251)
T PF09753_consen 214 ESKRLKE 220 (251)
T ss_pred HHHHHHH
Confidence 3444443
No 20
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.76 E-value=4.8 Score=36.02 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 039246 185 SDVNEEKKVDV 195 (253)
Q Consensus 185 ~~v~~vk~im~ 195 (253)
.+|.||-+|+.
T Consensus 187 ~dI~dvN~IFk 197 (269)
T KOG0811|consen 187 ADIIDVNEIFK 197 (269)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 21
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=55.75 E-value=7.6 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C 245 (253)
|.++..++.++++|++|.+..|
T Consensus 42 WpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHH
Confidence 3556665555555555666655
No 22
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=55.61 E-value=9.5 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 039246 232 FVCAVLFGIW 241 (253)
Q Consensus 232 vv~~vi~~i~ 241 (253)
+|++++++|+
T Consensus 10 vVLFILLiIv 19 (24)
T PF09680_consen 10 VVLFILLIIV 19 (24)
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 23
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=52.20 E-value=1.1e+02 Score=23.86 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=57.3
Q ss_pred EEEeCCeEEEeecC--CC-CC-------hhHHHHH---HHHhcC-CC-C-C--CeeEEEeCCe-EEEEEEeCCEEEEEEE
Q 039246 12 CIAKGSIILGEFSS--KE-PA-------ISETLAQ---ECIDKT-PR-H-H--LMFSHTVCKR-TYAFLINGPLTYFVIH 72 (253)
Q Consensus 12 ~Varg~~iLae~s~--~~-~n-------f~~~ia~---~iL~ki-p~-~-~--~k~s~~~~~~-~fh~l~~dgi~ylcit 72 (253)
.|+++..+|.+++- .. .. + ..++. .+++.. .. . + -+..+..++| +|.|+...++=|+.++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~-~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~ 79 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLY-QFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH 79 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHH-HHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHH-HHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEE
Confidence 47788888888642 22 12 2 33333 333322 12 1 1 1344555666 7778777889999999
Q ss_pred c---CCCCcchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHh
Q 039246 73 D---EDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMG 125 (253)
Q Consensus 73 d---~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~ 125 (253)
+ ........-.|.++|++.|.+..-++ +-.....=-...|...++++++
T Consensus 80 ~~~~~~~~d~~ik~fF~~vh~~Y~~~~~NP----F~~~~~~I~S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 80 DMSDNSIRDEDIKQFFKEVHELYVKALCNP----FYQPGTPIKSPKFDSRVRALAK 131 (132)
T ss_dssp CGGG-S--HHHHHHHHHHHHHHHHHHHTST----TCGCT-HHHHHHHHHHHHHHHH
T ss_pred ecccCCcchHHHHHHHHHHHHHHHHHccCC----CCCCCCCcCCHHHHHHHHHHhc
Confidence 8 45566667788899988888765432 1111111012357777776654
No 24
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=51.47 E-value=21 Score=28.96 Aligned_cols=23 Identities=9% Similarity=0.407 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
.++|+|+++|.+++|++....|.
T Consensus 31 m~tILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666655555664
No 25
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=51.20 E-value=25 Score=25.99 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039246 210 DHRQKAKQIWKKHVWIVLGLDLFVCAVLF 238 (253)
Q Consensus 210 ~a~~l~r~mww~~~K~~i~i~~vv~~vi~ 238 (253)
-.++.|||.-|++.=+.++++++++++.+
T Consensus 4 i~kK~K~k~~l~~~~isi~~~lvi~~i~~ 32 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIISALVIFIISF 32 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 56889999999999988888444443333
No 26
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=50.60 E-value=26 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=12.8
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 039246 217 QIWKKHVWIVLGLDLFVCAV 236 (253)
Q Consensus 217 ~mww~~~K~~i~i~~vv~~v 236 (253)
|-|-||..+.+.+.+|+++.
T Consensus 17 qkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56888888776655444433
No 27
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=49.09 E-value=23 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccc
Q 039246 229 LDLFVCAVLFGIWLWVCRGFRC 250 (253)
Q Consensus 229 i~~vv~~vi~~i~~~~C~Gf~C 250 (253)
++++++++++++.+.+| ..+|
T Consensus 7 ~~g~~~ll~~v~~~~~~-~rr~ 27 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVC-FRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHCC-CTT-
T ss_pred HHHHHHHHHhheeEEEE-EeeE
Confidence 33444444444445566 3444
No 28
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=49.05 E-value=20 Score=37.51 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039246 211 HRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 211 a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~ 242 (253)
--+--+.+.|+.++++|+..+++++++++.++
T Consensus 1058 p~K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1058 PCKSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678999999998887777766655443
No 29
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.88 E-value=11 Score=34.33 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=11.6
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039246 210 DHRQKAKQIWKKHVWIVLGLDLFVCAVLF 238 (253)
Q Consensus 210 ~a~~l~r~mww~~~K~~i~i~~vv~~vi~ 238 (253)
+|.+..++- |+.|++++|.++|+++++
T Consensus 259 kAv~~qkka--RK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 259 KAVKYQKKA--RKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHh--hhceeeeehHHHHHHHHH
Confidence 344444443 233444444444444443
No 30
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=47.50 E-value=17 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 039246 232 FVCAVLFGIW 241 (253)
Q Consensus 232 vv~~vi~~i~ 241 (253)
+|++++++|+
T Consensus 12 vVLFILLIIi 21 (26)
T TIGR01732 12 VVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 31
>COG4327 Predicted membrane protein [Function unknown]
Probab=46.06 E-value=43 Score=25.09 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=23.9
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039246 210 DHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 210 ~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~ 242 (253)
.+...++..|-.|..++.++.+|-.+|-|++++
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi~ 37 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVIL 37 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999888777776666666544
No 32
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=43.37 E-value=20 Score=30.71 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=24.5
Q ss_pred HHHHHHHHh----hhhHHHHHH--------------HHHHHHHHHHHHHhcCCc
Q 039246 213 QKAKQIWKK----HVWIVLGLD--------------LFVCAVLFGIWLWVCRGF 248 (253)
Q Consensus 213 ~l~r~mww~----~~K~~i~i~--------------~vv~~vi~~i~~~~C~Gf 248 (253)
.+-+|.||+ .+|++++++ +...+..+.|.+.+|.||
T Consensus 97 ~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 97 PFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 356889999 889888762 233344445667788886
No 33
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=43.12 E-value=34 Score=21.22 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 039246 228 GLDLFVC 234 (253)
Q Consensus 228 ~i~~vv~ 234 (253)
+|++|++
T Consensus 8 IIv~V~v 14 (38)
T PF02439_consen 8 IIVAVVV 14 (38)
T ss_pred HHHHHHH
Confidence 3333333
No 34
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=42.49 E-value=13 Score=27.91 Aligned_cols=14 Identities=50% Similarity=0.966 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcCC
Q 039246 234 CAVLFGIWLWVCRG 247 (253)
Q Consensus 234 ~~vi~~i~~~~C~G 247 (253)
.++.|+.|+++|++
T Consensus 81 ~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 81 GLVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHHhheeEEee
Confidence 34456778877754
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.27 E-value=31 Score=27.15 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039246 225 IVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 225 ~~i~i~~vv~~vi~~i~ 241 (253)
+..||++|++.||.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 44555555555555444
No 36
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.91 E-value=34 Score=30.62 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=3.9
Q ss_pred chHHHHHHH
Q 039246 210 DHRQKAKQI 218 (253)
Q Consensus 210 ~a~~l~r~m 218 (253)
.+..|++.+
T Consensus 227 g~~~L~kA~ 235 (269)
T KOG0811|consen 227 GTENLRKAA 235 (269)
T ss_pred HHHHHHHHH
Confidence 344444443
No 37
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.11 E-value=26 Score=31.60 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039246 227 LGLDLFVCAVLFGIWLW 243 (253)
Q Consensus 227 i~i~~vv~~vi~~i~~~ 243 (253)
+++.++|+++|+.||+-
T Consensus 267 vllil~vvliiLYiWly 283 (295)
T TIGR01478 267 VLIILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555566668863
No 38
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=39.66 E-value=15 Score=30.47 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 039246 228 GLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 228 ~i~~vv~~vi~~i~~~~C 245 (253)
|++.|+++|++||++++|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 344444545555666666
No 39
>PHA02844 putative transmembrane protein; Provisional
Probab=39.60 E-value=33 Score=24.50 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=5.5
Q ss_pred cccccccccCC
Q 039246 187 VNEEKKVDVCD 197 (253)
Q Consensus 187 v~~vk~im~~N 197 (253)
++-||.+|.+-
T Consensus 24 I~vVksVLtd~ 34 (75)
T PHA02844 24 IDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHcCC
Confidence 34455555543
No 40
>PRK11901 hypothetical protein; Reviewed
Probab=39.49 E-value=30 Score=31.80 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
-|+|.|+++|+++|+|.|.+.-+
T Consensus 37 h~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 45677777777776666655443
No 41
>PTZ00370 STEVOR; Provisional
Probab=38.65 E-value=28 Score=31.42 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039246 227 LGLDLFVCAVLFGIWLW 243 (253)
Q Consensus 227 i~i~~vv~~vi~~i~~~ 243 (253)
+++.++|+++|+.||+-
T Consensus 263 vllil~vvliilYiwly 279 (296)
T PTZ00370 263 VLLILAVVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555566668863
No 42
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=37.97 E-value=69 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=17.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039246 215 AKQIWKKHVWIVLGLDLFVCAVLFGI 240 (253)
Q Consensus 215 ~r~mww~~~K~~i~i~~vv~~vi~~i 240 (253)
++..|-+|.+++.++.++=+++-|+.
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888776665555555543
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.87 E-value=32 Score=25.77 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 039246 224 WIVLGLDLFVCAVLFG 239 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~ 239 (253)
|..|++++++++||+|
T Consensus 4 K~~llL~l~LA~lLli 19 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLI 19 (95)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555565555555444
No 44
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=18 Score=28.10 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 039246 226 VLGLDLFVCAVLFGI 240 (253)
Q Consensus 226 ~i~i~~vv~~vi~~i 240 (253)
+++++++|.++|+.+
T Consensus 101 ~m~~f~lV~~fi~~~ 115 (118)
T KOG3385|consen 101 WMAVFSLVAFFILWV 115 (118)
T ss_pred HHHHHHHHHHHHhhe
Confidence 444544444444333
No 45
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=37.45 E-value=42 Score=24.56 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 039246 225 IVLGLDLFV 233 (253)
Q Consensus 225 ~~i~i~~vv 233 (253)
+.|++++|+
T Consensus 28 MtILivLVI 36 (85)
T PF10717_consen 28 MTILIVLVI 36 (85)
T ss_pred HHHHHHHHH
Confidence 344443333
No 46
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.80 E-value=1.1e+02 Score=28.80 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=31.3
Q ss_pred EEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 60 FLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 60 ~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
-..++++.|+.++..+.|--.++.||.+|.+-|..-|+
T Consensus 59 sv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 59 SVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 33357777777777888999999999999999998886
No 47
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=36.76 E-value=24 Score=25.58 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=29.3
Q ss_pred cccccccccccCChHHHhhhcccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039246 185 SDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGI 240 (253)
Q Consensus 185 ~~v~~vk~im~~Nt~~L~~~af~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i 240 (253)
+++++-.+-|.+++...+.+|-+.++ +. +.-+++-+=+++++.++++++++++
T Consensus 34 ~~L~~kt~~L~~~a~~F~k~a~~l~r--~~-~~~~~k~~~i~~~iv~~~~~~i~~~ 86 (89)
T PF00957_consen 34 EELEDKTEELSDNAKQFKKNAKKLKR--KM-WWRNYKLYIIIIIIVIIIILIIIIV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH--HH-HHHHHHHHHhHHhhhhhhhhHHHHH
Confidence 44455666777888889988822111 22 2233344455555555555555543
No 48
>PHA02650 hypothetical protein; Provisional
Probab=36.69 E-value=38 Score=24.52 Aligned_cols=9 Identities=22% Similarity=-0.112 Sum_probs=4.0
Q ss_pred ccccccccC
Q 039246 188 NEEKKVDVC 196 (253)
Q Consensus 188 ~~vk~im~~ 196 (253)
+-||.+|.+
T Consensus 25 ~VVkSVLtD 33 (81)
T PHA02650 25 DVVKSVLSD 33 (81)
T ss_pred HHHHHHHcC
Confidence 344444444
No 49
>PHA03240 envelope glycoprotein M; Provisional
Probab=36.60 E-value=33 Score=29.68 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039246 214 KAKQIW 219 (253)
Q Consensus 214 l~r~mw 219 (253)
-..-+|
T Consensus 210 aaH~~W 215 (258)
T PHA03240 210 AAHIAW 215 (258)
T ss_pred cchHhH
Confidence 333344
No 50
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=35.69 E-value=36 Score=31.99 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 214 KAKQIWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 214 l~r~mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
-+++-||.++...+++.+++++++..++
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~ 320 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAI 320 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3556799999888776665544444443
No 51
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=35.35 E-value=49 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=16.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 218 IWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 218 mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
.||+.+|+.++..++.+++-+.+.
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~ 25 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAIL 25 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588889988877666665555443
No 52
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=34.34 E-value=20 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039246 220 KKHVWIVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
|.++-.++++.+|.+.++|+.|.++-+
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 777878888888888888888877643
No 53
>PF15339 Afaf: Acrosome formation-associated factor
Probab=34.04 E-value=45 Score=27.86 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVCRG 247 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C~G 247 (253)
|+++.|.+ .-++||++++++|..
T Consensus 131 kLmLGIsL-mTl~lfv~Ll~~c~a 153 (200)
T PF15339_consen 131 KLMLGISL-MTLFLFVILLAFCSA 153 (200)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444443 344677788888843
No 54
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=33.89 E-value=71 Score=21.08 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=14.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCccc
Q 039246 220 KKHVWIVLGLDLFVCAVLFGIWLWVCRGFRC 250 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi~~i~~~~C~Gf~C 250 (253)
|+.+++--++.++|++++-++ +..++..+|
T Consensus 11 y~tLrigGLi~A~vlfi~Gi~-iils~kckC 40 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFILGIL-IILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHCTTHHHH
T ss_pred hhHhhccchHHHHHHHHHHHH-HHHcCcccc
Confidence 556666555544444444333 334433455
No 55
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=32.85 E-value=93 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039246 210 DHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 210 ~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~ 242 (253)
=++-||+-.|.=++-++.-++-..++++|+.|.
T Consensus 18 Va~vLRWl~W~vky~VI~PlATmaLmalfVlwk 50 (202)
T PF07296_consen 18 VARVLRWLFWCVKYAVIWPLATMALMALFVLWK 50 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 588899999999998888888888889998884
No 56
>PHA01811 hypothetical protein
Probab=32.64 E-value=49 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred CCeeEEEeCCeEEEEEEeC
Q 039246 46 HLMFSHTVCKRTYAFLING 64 (253)
Q Consensus 46 ~~k~s~~~~~~~fh~l~~d 64 (253)
+.-.+....+|.|||+-++
T Consensus 4 ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred ccEEEEEEeeEEEEEEcCc
Confidence 4467888999999999864
No 57
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=32.50 E-value=55 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039246 226 VLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 226 ~i~i~~vv~~vi~~i~~ 242 (253)
.++..++|+|+|+++++
T Consensus 26 ~lMtILivLVIIiLlIm 42 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIM 42 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777777665554
No 58
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=32.42 E-value=37 Score=29.31 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=5.1
Q ss_pred chHHHHHHHH
Q 039246 115 HFDAVFCEIM 124 (253)
Q Consensus 115 ~F~~~L~~~m 124 (253)
...++++...
T Consensus 38 ~w~~~~qN~t 47 (227)
T PF05399_consen 38 VWDSIIQNKT 47 (227)
T ss_pred cccccccccc
Confidence 4455555544
No 59
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=32.39 E-value=15 Score=36.38 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=0.0
Q ss_pred eEEEeecCCCCChhHHHHHHHHhcCCC
Q 039246 18 IILGEFSSKEPAISETLAQECIDKTPR 44 (253)
Q Consensus 18 ~iLae~s~~~~nf~~~ia~~iL~kip~ 44 (253)
.-|.+|++....- .-..++|=|.++.
T Consensus 340 q~l~~~~evr~sr-~LA~qKiNECVKS 365 (610)
T PF01601_consen 340 QQLTKYTEVRASR-QLAQQKINECVKS 365 (610)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 4455665533322 2233455555543
No 60
>PHA02975 hypothetical protein; Provisional
Probab=32.30 E-value=50 Score=23.25 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 039246 225 IVLGLDLFVCAVLF 238 (253)
Q Consensus 225 ~~i~i~~vv~~vi~ 238 (253)
++|++..++|++++
T Consensus 47 ~ii~i~~v~~~~~~ 60 (69)
T PHA02975 47 LIIFIIFITCIAVF 60 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 61
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=31.38 E-value=58 Score=21.92 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHhcCC-CCCCeeEEEeCCeEEEEEE--eCCEEEEEEEcCCC
Q 039246 27 EPAISETLAQECIDKTP-RHHLMFSHTVCKRTYAFLI--NGPLTYFVIHDEDL 76 (253)
Q Consensus 27 ~~nf~~~ia~~iL~kip-~~~~k~s~~~~~~~fh~l~--~dgi~ylcitd~~~ 76 (253)
..+| +++...+=+++. +..-+..|+.++.-.+-+. +||-.|+|...+.+
T Consensus 8 ~~s~-e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~f 59 (60)
T PF03607_consen 8 FRSF-EQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREPF 59 (60)
T ss_dssp HSSH-HHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS-
T ss_pred hcCH-HHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCcC
Confidence 3678 888888888885 3347888999886665555 38899999866543
No 62
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.66 E-value=50 Score=24.47 Aligned_cols=6 Identities=50% Similarity=1.171 Sum_probs=2.9
Q ss_pred HHHHhc
Q 039246 240 IWLWVC 245 (253)
Q Consensus 240 i~~~~C 245 (253)
|.+.+|
T Consensus 49 ilwfvC 54 (94)
T PF05393_consen 49 ILWFVC 54 (94)
T ss_pred HHHHHH
Confidence 334455
No 63
>PHA03054 IMV membrane protein; Provisional
Probab=30.61 E-value=56 Score=23.13 Aligned_cols=10 Identities=20% Similarity=-0.067 Sum_probs=4.5
Q ss_pred cccccccccC
Q 039246 187 VNEEKKVDVC 196 (253)
Q Consensus 187 v~~vk~im~~ 196 (253)
++-|+.+|.+
T Consensus 24 i~vV~sVl~d 33 (72)
T PHA03054 24 IEIVKSVLSD 33 (72)
T ss_pred HHHHHHHHcC
Confidence 3444544444
No 64
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=30.43 E-value=61 Score=24.48 Aligned_cols=8 Identities=13% Similarity=-0.280 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 039246 223 VWIVLGLD 230 (253)
Q Consensus 223 ~K~~i~i~ 230 (253)
.|.+++.+
T Consensus 14 ~K~~~FA~ 21 (121)
T PF10669_consen 14 TKIMFFAF 21 (121)
T ss_pred HHHHHHHH
Confidence 34444433
No 65
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=30.26 E-value=67 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=12.5
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHH-Hhc
Q 039246 221 KHVWIVLGL-DLFVCAVLFGIWL-WVC 245 (253)
Q Consensus 221 ~~~K~~i~i-~~vv~~vi~~i~~-~~C 245 (253)
++.|+++++ .+++|+++|+..+ +.|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 445555544 4445555555433 345
No 66
>PF15102 TMEM154: TMEM154 protein family
Probab=29.81 E-value=20 Score=29.05 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=5.7
Q ss_pred HHHHhcCCccc
Q 039246 240 IWLWVCRGFRC 250 (253)
Q Consensus 240 i~~~~C~Gf~C 250 (253)
+++.||.-+.|
T Consensus 72 Ll~vV~lv~~~ 82 (146)
T PF15102_consen 72 LLSVVCLVIYY 82 (146)
T ss_pred HHHHHHheeEE
Confidence 33447755543
No 67
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=29.37 E-value=65 Score=24.40 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=8.9
Q ss_pred HHHHhhhhHHHHHHH
Q 039246 217 QIWKKHVWIVLGLDL 231 (253)
Q Consensus 217 ~mww~~~K~~i~i~~ 231 (253)
||-|+.+++.|++.+
T Consensus 2 ~~~~~~~~~~ii~~~ 16 (103)
T PRK14125 2 KLKESKIHVSIFFVL 16 (103)
T ss_pred chHHHHHHHHHHHHH
Confidence 466777776664433
No 68
>PHA02819 hypothetical protein; Provisional
Probab=29.21 E-value=63 Score=22.86 Aligned_cols=10 Identities=30% Similarity=0.062 Sum_probs=5.6
Q ss_pred cccccccccC
Q 039246 187 VNEEKKVDVC 196 (253)
Q Consensus 187 v~~vk~im~~ 196 (253)
++-||.+|.+
T Consensus 24 I~VVksVLtd 33 (71)
T PHA02819 24 INVVKSVLNN 33 (71)
T ss_pred HHHHHHHHcC
Confidence 4456666655
No 69
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.03 E-value=28 Score=26.22 Aligned_cols=7 Identities=29% Similarity=0.728 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 039246 234 CAVLFGI 240 (253)
Q Consensus 234 ~~vi~~i 240 (253)
++++|+|
T Consensus 75 lVily~I 81 (101)
T PF06024_consen 75 LVILYAI 81 (101)
T ss_pred HHHHhhh
Confidence 3333333
No 70
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=28.65 E-value=3.1e+02 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCC-CCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHh
Q 039246 32 ETLAQECIDKTP-RHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIF 96 (253)
Q Consensus 32 ~~ia~~iL~kip-~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~ 96 (253)
-.+.+.++.... ..+.-.++..++..|.|+..+.+.|+||+...-+...--.-|+-|.......-
T Consensus 38 ~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~l 103 (415)
T PF03164_consen 38 MGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 344455555443 33555678889999999999999999999998887766677776666555443
No 71
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.17 E-value=86 Score=20.64 Aligned_cols=11 Identities=9% Similarity=-0.341 Sum_probs=6.6
Q ss_pred HHhhhhHHHHH
Q 039246 219 WKKHVWIVLGL 229 (253)
Q Consensus 219 ww~~~K~~i~i 229 (253)
||+++|..++-
T Consensus 3 ~~~~~~~~iiG 13 (51)
T PF10031_consen 3 FWKNHRGKIIG 13 (51)
T ss_pred HHHHCcchHHH
Confidence 67777754443
No 72
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=28.07 E-value=84 Score=22.93 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=0.0
Q ss_pred cccccCC
Q 039246 191 KKVDVCD 197 (253)
Q Consensus 191 k~im~~N 197 (253)
|++|+||
T Consensus 6 ke~lme~ 12 (93)
T PF08999_consen 6 KEVLMER 12 (93)
T ss_dssp -------
T ss_pred hhhhhcC
Confidence 5556666
No 73
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=27.96 E-value=70 Score=22.76 Aligned_cols=13 Identities=23% Similarity=-0.010 Sum_probs=7.2
Q ss_pred cccccccccccCC
Q 039246 185 SDVNEEKKVDVCD 197 (253)
Q Consensus 185 ~~v~~vk~im~~N 197 (253)
+=++.|+.+|.|-
T Consensus 22 ~Fi~vVksVltdk 34 (72)
T PF12575_consen 22 NFINVVKSVLTDK 34 (72)
T ss_pred HHHHHHHHHHcCC
Confidence 3345666666554
No 74
>PF12669 P12: Virus attachment protein p12 family
Probab=27.68 E-value=54 Score=22.17 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039246 232 FVCAVLFG 239 (253)
Q Consensus 232 vv~~vi~~ 239 (253)
++++++|+
T Consensus 8 i~~~~~~v 15 (58)
T PF12669_consen 8 ILAAVAYV 15 (58)
T ss_pred HHHHHHHH
Confidence 33333333
No 75
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=27.59 E-value=1.3e+02 Score=25.36 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHhhhc-ccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039246 199 VTVQKNA-LYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 199 ~~L~~~a-f~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~ 242 (253)
.++...+ .. .=+.-||+-.|.=++-++.-++-..++++|++|.
T Consensus 7 ~~~~~~all~-~va~~LRWL~W~vkyaVIwPlATmaLlv~lvlw~ 50 (198)
T PRK13739 7 SRQACHALLY-VVARVLRWLFWCVKYAVIWPLATMALMVLFVLWK 50 (198)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444 22 3578899999998888888888888888888884
No 76
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=27.35 E-value=67 Score=21.95 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=7.4
Q ss_pred HHhhhhHHHHHHH
Q 039246 219 WKKHVWIVLGLDL 231 (253)
Q Consensus 219 ww~~~K~~i~i~~ 231 (253)
|...+++++++.+
T Consensus 3 WladYWWiiLl~l 15 (63)
T PF13980_consen 3 WLADYWWIILLIL 15 (63)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666654433
No 77
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.88 E-value=56 Score=29.73 Aligned_cols=6 Identities=33% Similarity=0.036 Sum_probs=3.6
Q ss_pred eEEEee
Q 039246 18 IILGEF 23 (253)
Q Consensus 18 ~iLae~ 23 (253)
..|||.
T Consensus 19 R~LcEC 24 (299)
T PF02009_consen 19 RSLCEC 24 (299)
T ss_pred cchhhh
Confidence 566664
No 78
>PF13974 YebO: YebO-like protein
Probab=26.55 E-value=45 Score=24.24 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 039246 229 LDLFVCAVLFGIWLWV 244 (253)
Q Consensus 229 i~~vv~~vi~~i~~~~ 244 (253)
+.++++++.+++|.++
T Consensus 3 ~~~~~~lv~livWFFV 18 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFV 18 (80)
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3445555566677654
No 79
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.76 E-value=80 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH-HHHHHHHh
Q 039246 226 VLGLDLFVCAV-LFGIWLWV 244 (253)
Q Consensus 226 ~i~i~~vv~~v-i~~i~~~~ 244 (253)
..+++++|+++ ..++|.++
T Consensus 7 ~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 33455443
No 80
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=25.67 E-value=65 Score=26.20 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 039246 222 HVWIVLGLDLFVCAVL 237 (253)
Q Consensus 222 ~~K~~i~i~~vv~~vi 237 (253)
|.|+++.+.+.|++++
T Consensus 118 ~nklilaisvtvv~~i 133 (154)
T PF14914_consen 118 NNKLILAISVTVVVMI 133 (154)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4455555544444333
No 81
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.60 E-value=1.4e+02 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 039246 222 HVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 222 ~~K~~i~i~~vv~~vi~~i~~ 242 (253)
-.+.+..+.++++++.+++|.
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~ 29 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWA 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 82
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=25.46 E-value=1.1e+02 Score=18.39 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039246 228 GLDLFVCAVLFGIWLWV 244 (253)
Q Consensus 228 ~i~~vv~~vi~~i~~~~ 244 (253)
++.+++.+.|++.|..+
T Consensus 10 ~vv~iLt~~ILvFWfgv 26 (34)
T PF08113_consen 10 GVVMILTAFILVFWFGV 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHH
Confidence 34444445555566544
No 83
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=25.42 E-value=1.2e+02 Score=21.66 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=17.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 218 IWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 218 mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
+.+++.|.-|+++++|++++.+.|
T Consensus 12 ll~~~l~~~i~~a~~ls~~~~~~~ 35 (73)
T PF02937_consen 12 LLAKRLKRHIVVAFVLSLGVAAAY 35 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888887777766555
No 84
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=25.37 E-value=86 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 216 KQIWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 216 r~mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
.+||.++.|.+.++++ +++++...+
T Consensus 27 ~~~~~k~~r~~Al~al-il~i~as~~ 51 (218)
T PF10039_consen 27 FRMWRKYKRAIALAAL-ILFILASLG 51 (218)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3555555555444444 444443333
No 85
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.13 E-value=1.7e+02 Score=21.40 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=11.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039246 215 AKQIWKKHVWIVLGLDLFVCAVLFGIW 241 (253)
Q Consensus 215 ~r~mww~~~K~~i~i~~vv~~vi~~i~ 241 (253)
-+++-|.+.-.++++.++++..++++|
T Consensus 6 ~~~~~~~~~l~i~l~~~v~~~a~~~v~ 32 (97)
T PF04999_consen 6 IRDIKRQKKLIILLVIVVLISALGVVY 32 (97)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333344444
No 86
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=23.93 E-value=1.2e+02 Score=21.53 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHhcCC--CCCCeeEEEeCC-eEEEEEE--eCCEEEEEEEcCCCC
Q 039246 27 EPAISETLAQECIDKTP--RHHLMFSHTVCK-RTYAFLI--NGPLTYFVIHDEDLH 77 (253)
Q Consensus 27 ~~nf~~~ia~~iL~kip--~~~~k~s~~~~~-~~fh~l~--~dgi~ylcitd~~~~ 77 (253)
-.+| +++...+=+++. +..-+..|+.++ ....-+. ++|-.|+|...+.+.
T Consensus 25 ~~sf-d~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~fk 79 (80)
T cd01617 25 FKSF-DALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPFK 79 (80)
T ss_pred hCCH-HHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCCC
Confidence 4788 888888888886 466788888887 5555544 489999998776653
No 87
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=23.57 E-value=1.1e+02 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=13.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 039246 216 KQIWKKHVWIVLGLDLFVCAVL 237 (253)
Q Consensus 216 r~mww~~~K~~i~i~~vv~~vi 237 (253)
..-||++....+.+.++|+.++
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~ 88 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLA 88 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 3468888886666655554333
No 88
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.34 E-value=28 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C 245 (253)
-+..+|+++|+.++++|+++.+
T Consensus 10 vlaavIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILF 31 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444
No 89
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.59 E-value=86 Score=29.71 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Q 039246 223 VWIVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 223 ~K~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
.|.+|.++.+.+++|++|+++..|
T Consensus 49 kK~ii~was~a~~lIlii~~~~fg 72 (465)
T COG4640 49 KKKIIPWASGAFILILIIILFFFG 72 (465)
T ss_pred cceeehhHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666653
No 90
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=22.47 E-value=43 Score=33.57 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=8.9
Q ss_pred cccccchHHHHHHHHh
Q 039246 110 HCFQAHFDAVFCEIMG 125 (253)
Q Consensus 110 ~~l~~~F~~~L~~~m~ 125 (253)
..|+..|...|.+++.
T Consensus 153 ~~f~~s~er~laqll~ 168 (684)
T PF12877_consen 153 RVFYQSFERRLAQLLA 168 (684)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344566666666554
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.39 E-value=27 Score=30.21 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.7
Q ss_pred hhhHHHHH
Q 039246 222 HVWIVLGL 229 (253)
Q Consensus 222 ~~K~~i~i 229 (253)
+++++|.|
T Consensus 36 ~~~I~iai 43 (221)
T PF08374_consen 36 YVKIMIAI 43 (221)
T ss_pred ceeeeeee
Confidence 34554444
No 92
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.16 E-value=98 Score=23.26 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=11.0
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 039246 219 WKKHVWIVLGLDLFVCAVL 237 (253)
Q Consensus 219 ww~~~K~~i~i~~vv~~vi 237 (253)
-|||+=++++..++.+++.
T Consensus 48 ~WRN~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVLT 66 (103)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3788777665544444333
No 93
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.11 E-value=1.7e+02 Score=25.31 Aligned_cols=11 Identities=0% Similarity=0.344 Sum_probs=4.5
Q ss_pred cccccccccCC
Q 039246 187 VNEEKKVDVCD 197 (253)
Q Consensus 187 v~~vk~im~~N 197 (253)
|.+-..|+.+-
T Consensus 137 l~ds~Ria~ET 147 (220)
T KOG1666|consen 137 LKDSQRIALET 147 (220)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 94
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.94 E-value=1.1e+02 Score=28.73 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=11.0
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 039246 217 QIWKKHVWIVLGLDLFVCAV 236 (253)
Q Consensus 217 ~mww~~~K~~i~i~~vv~~v 236 (253)
+++|++.++++++.++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~~~ 53 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFACA 53 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555444433
No 95
>COG5547 Small integral membrane protein [Function unknown]
Probab=21.53 E-value=1.3e+02 Score=20.59 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=10.4
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 039246 219 WKKHVWIVLGLDLFVCAV 236 (253)
Q Consensus 219 ww~~~K~~i~i~~vv~~v 236 (253)
|.+.+|+-|+.+++.+++
T Consensus 3 flk~fkypIIgglvglli 20 (62)
T COG5547 3 FLKKFKYPIIGGLVGLLI 20 (62)
T ss_pred HHHHhccchHHHHHHHHH
Confidence 566777766655544433
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.94 E-value=1e+02 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.168 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C 245 (253)
-+++.+.+.|+++|++|++.+.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 97
>PRK13664 hypothetical protein; Provisional
Probab=20.85 E-value=1.4e+02 Score=20.26 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=5.6
Q ss_pred HHhhhhHHHHH
Q 039246 219 WKKHVWIVLGL 229 (253)
Q Consensus 219 ww~~~K~~i~i 229 (253)
|...+++++++
T Consensus 3 WLadyWWilil 13 (62)
T PRK13664 3 WLAKYWWILVL 13 (62)
T ss_pred hHHHHHHHHHH
Confidence 45555555433
No 98
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=20.07 E-value=1e+02 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=22.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039246 218 IWKKHVWIVLGLDLFVCAVLFGIWLWVCR 246 (253)
Q Consensus 218 mww~~~K~~i~i~~vv~~vi~~i~~~~C~ 246 (253)
-|..--++...|.++|++++.++|+-+|.
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~a 705 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKICA 705 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhheE
Confidence 56666677777888888888888888884
Done!