Query 039246
Match_columns 253
No_of_seqs 137 out of 744
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 1.8E-48 6.1E-53 328.3 13.0 170 5-224 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 2.2E-38 7.4E-43 268.1 15.6 165 7-222 2-196 (196)
3 4afi_A AP-3 complex subunit de 100.0 8.2E-35 2.8E-39 241.1 14.4 117 5-126 53-169 (173)
4 2vx8_A Nucleoporin-like protei 100.0 1.9E-30 6.4E-35 214.2 12.6 117 5-126 43-159 (169)
5 3kyq_A YKT6, synaptobrevin hom 99.9 3.2E-27 1.1E-31 199.8 9.7 158 5-216 1-194 (199)
6 3bw6_A Synaptobrevin homolog Y 99.9 1.1E-23 3.8E-28 169.6 14.2 123 4-136 3-141 (144)
7 3hd7_A Vesicle-associated memb 99.8 7.7E-20 2.6E-24 135.9 2.6 68 163-245 4-90 (91)
8 2kog_A Vesicle-associated memb 99.7 2.2E-18 7.4E-23 133.9 -0.5 68 163-245 32-118 (119)
9 2nps_A VAMP-4, vesicle-associa 99.1 1.9E-12 6.5E-17 92.3 -1.5 48 164-226 8-74 (74)
10 1sfc_A VAMP 2, protein (synapt 99.1 5.1E-12 1.8E-16 94.4 -0.5 48 164-226 30-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.1 3.4E-12 1.2E-16 92.3 -2.3 48 163-225 14-80 (80)
12 3b5n_A Synaptobrevin homolog 1 98.4 1.1E-08 3.6E-13 70.0 -1.7 35 184-219 8-61 (61)
13 1n7s_A Vesicle-associated memb 98.4 1.2E-08 4.2E-13 70.1 -2.0 41 164-219 4-63 (63)
14 1urq_A M-tomosyn isoform; tran 97.7 1.8E-06 6.2E-11 59.1 -2.0 34 184-218 10-62 (63)
15 2fh5_A Signal recognition part 97.7 0.00022 7.6E-09 58.8 9.7 116 6-124 10-134 (185)
16 1gl2_A Endobrevin; membrane pr 97.5 3.7E-06 1.3E-10 57.9 -2.6 38 164-216 9-65 (65)
17 3fie_C Fragment of vesicle-ass 94.7 0.01 3.6E-07 36.1 1.4 23 164-200 9-31 (38)
18 1w63_M Adaptor-related protein 85.7 3.6 0.00012 37.5 9.3 92 6-97 1-96 (423)
19 1w63_Q Adapter-related protein 85.4 12 0.0004 29.3 11.7 49 49-97 48-96 (158)
20 2vgl_S AP-2 complex subunit si 83.4 13 0.00045 28.3 11.2 49 49-97 48-96 (142)
21 3tjz_C Coatomer subunit zeta-1 81.7 17 0.00057 28.4 12.4 89 7-96 12-105 (153)
22 2fz0_A R-snare NYV1P, V-snare 79.3 2.4 8.3E-05 32.7 4.5 37 54-90 75-114 (149)
23 2vgl_M AP-2 complex subunit MU 75.7 29 0.00099 31.5 11.7 49 49-97 46-94 (435)
24 3hd7_B Syntaxin-1A; membrane p 66.8 5.7 0.0002 29.3 3.9 11 83-93 11-21 (109)
25 2klu_A T-cell surface glycopro 62.5 2.6 9E-05 28.5 1.1 32 219-251 4-35 (70)
26 3h3g_B Parathyroid hormone-rel 62.1 5 0.00017 21.5 1.9 14 210-223 3-16 (24)
27 2zxe_G FXYD10, phospholemman-l 54.9 13 0.00046 25.4 3.6 31 220-251 16-46 (74)
28 3hd7_B Syntaxin-1A; membrane p 48.1 25 0.00086 25.7 4.6 7 241-247 100-106 (109)
29 3zym_A Phosphatidylinositol-bi 46.8 1.7 5.7E-05 38.4 -2.5 17 184-200 286-302 (310)
30 2jp3_A FXYD domain-containing 41.9 15 0.0005 24.8 2.1 18 220-237 14-31 (67)
31 3fym_A Putative uncharacterize 38.9 6.4 0.00022 29.6 0.0 23 220-242 102-124 (130)
32 2k1a_A Integrin alpha-IIB; sin 38.6 43 0.0015 20.3 3.8 16 234-249 23-38 (42)
33 2knc_A Integrin alpha-IIB; tra 38.5 22 0.00074 23.0 2.5 17 233-249 24-40 (54)
34 2l8s_A Integrin alpha-1; trans 36.1 25 0.00086 22.7 2.5 15 234-248 22-36 (54)
35 2j3t_C Trafficking protein par 34.4 87 0.003 23.9 6.0 85 36-127 46-137 (145)
36 3j1r_A Archaeal adhesion filam 32.8 43 0.0015 18.1 2.7 15 228-242 11-25 (26)
37 3cue_C Transport protein parti 31.5 1.2E+02 0.0042 23.5 6.5 57 36-94 52-113 (159)
38 3vmt_A Monofunctional glycosyl 29.3 33 0.0011 29.4 2.9 27 213-239 26-52 (263)
39 2j3t_D Trafficking protein par 27.5 2.6E+02 0.0089 23.0 8.0 84 36-126 119-208 (219)
40 3cue_A Transport protein parti 26.1 2.1E+02 0.0073 23.6 7.2 48 47-94 118-188 (219)
41 1spf_A Pulmonary surfactant-as 25.7 85 0.0029 17.9 3.2 17 224-240 11-27 (35)
42 4a4y_A Protein MXIG; protein b 24.0 1.5E+02 0.005 21.7 5.1 45 5-62 83-127 (146)
43 2jo1_A Phospholemman; FXYD1, N 21.5 86 0.003 21.2 3.2 16 220-235 13-28 (72)
44 1afo_A Glycophorin A; integral 21.0 1.1E+02 0.0039 18.2 3.2 20 224-243 11-30 (40)
45 3n2f_G Na+/K+ ATPase gamma sub 20.9 76 0.0026 17.9 2.4 20 220-239 7-26 (31)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=1.8e-48 Score=328.26 Aligned_cols=170 Identities=18% Similarity=0.326 Sum_probs=131.2
Q ss_pred CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246 5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF 84 (253)
Q Consensus 5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F 84 (253)
+|+|+|+|||||++|||||+..+||| .++++++|+++|+.++|.||+.|+|+|||+.++|++|+||||++||+++||+|
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf-~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~f 79 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 79 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECH-HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHH
Confidence 59999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCc
Q 039246 85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPC 164 (253)
Q Consensus 85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 164 (253)
|++|+++|...|+. .+.++.|++++.+|.+.|+++|++ |+ +|.+ .|
T Consensus 80 L~~i~~eF~~~~~~----~~~~~~~~~~~~~f~~~l~~~~~~---y~-d~~~--------------------------~d 125 (189)
T 4b93_A 80 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH---HS-ENKS--------------------------LD 125 (189)
T ss_dssp HHHHHHHHHHHHGG----GGGTCCTTTTHHHHHHHHHHHHHH---HH-CC------------------------------
T ss_pred HHHHHHHHHhhccc----cccccCCccccchhhHHHHHHHHh---hh-cccc--------------------------hh
Confidence 99999999999974 356788999999999999999997 54 4433 17
Q ss_pred hhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246 165 KGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW 224 (253)
Q Consensus 165 k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K 224 (253)
++.+++ +||++|++||.+| |++|+.+| |+ ++|++|+|+|||+|+|
T Consensus 126 ~l~~~~--------------~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~-~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 126 KVMETQ--------------AQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFK-TTSRNLARAMCMKNIK 189 (189)
T ss_dssp ---CCH--------------HHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC--------------------------
T ss_pred hHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 888854 9999999999999 88999988 99 6999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=2.2e-38 Score=268.13 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=110.4
Q ss_pred eeEEEEEEeC--CeEEEeecCCC---CC----hhHHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCC
Q 039246 7 LVFYACIAKG--SIILGEFSSKE---PA----ISETLAQECIDKTPR-HHLMFSHTVCKRTYAFLINGPLTYFVIHDEDL 76 (253)
Q Consensus 7 ~I~Ya~Varg--~~iLae~s~~~---~n----f~~~ia~~iL~kip~-~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~ 76 (253)
+|+|+||||+ ++|||||++.+ |+ | .++++.+|+++|+ .+.|.+++.++|+|||+.++|++|+||||++|
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~-~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQY-QSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHH-HHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHH-HHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 4899999998 89999998743 44 8 9999999999986 78999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCccccccc
Q 039246 77 HKGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTV 155 (253)
Q Consensus 77 ~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (253)
|+++||+||++|+++|...|+. .+.+ +.||+++ +|++.|+++|++ |+ ||.+
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~----~~~~~~~~~~~~-~f~~~l~~~~~~---y~-~~~~------------------- 132 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK----KVPTVSRPYSFI-EFDTFIQKTKKL---YI-DSRA------------------- 132 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT----TTTTCCSTTTTG-GGHHHHHHHHTT---TS-CCC--------------------
T ss_pred chHHHHHHHHHHHHHHHHhccc----hhccccCCCchH-HHHHHHHHHHHH---hc-Cccc-------------------
Confidence 9999999999999999999973 3444 6799996 999999999998 65 5544
Q ss_pred ccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHH
Q 039246 156 LAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAK 216 (253)
Q Consensus 156 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r 216 (253)
.|++.+++ .||++|++||.+| |++|+.+| |+ ++|++++|
T Consensus 133 -------~d~l~~~~--------------~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~-~~a~~l~~ 190 (196)
T 2nut_C 133 -------RRNLGSIN--------------TELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYR-QDAKYLNM 190 (196)
T ss_dssp -------------------------------------CCEEEHHHHC---------------------------------
T ss_pred -------hhHHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 28888865 9999999999999 88999988 99 69999999
Q ss_pred HHHHhh
Q 039246 217 QIWKKH 222 (253)
Q Consensus 217 ~mww~~ 222 (253)
+|||++
T Consensus 191 ~~~~~k 196 (196)
T 2nut_C 191 RSTYAK 196 (196)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999985
No 3
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=241.08 Aligned_cols=117 Identities=17% Similarity=0.374 Sum_probs=112.8
Q ss_pred CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246 5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF 84 (253)
Q Consensus 5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F 84 (253)
-|+|+|||||||++|||||+..+||| ..+++++|+|+|++++|.+++.++|+|||++++|++|+||||+++|+++||+|
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~F 131 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 131 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHH
Confidence 49999999999999999999999999 99999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhc
Q 039246 85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGL 126 (253)
Q Consensus 85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~ 126 (253)
|+||+++|.+.|+. ++.++.||+|+++|+++|+++|++
T Consensus 132 LedI~~eF~~~yg~----~~~ta~pya~~~eF~~~L~~~M~~ 169 (173)
T 4afi_A 132 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH 169 (173)
T ss_dssp HHHHHHHHHHHHGG----GGGTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhch----hhhhccCcchhHHHHHHHHHHHHH
Confidence 99999999999973 577899999999999999999998
No 4
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=1.9e-30 Score=214.23 Aligned_cols=117 Identities=17% Similarity=0.369 Sum_probs=108.6
Q ss_pred CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246 5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF 84 (253)
Q Consensus 5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F 84 (253)
.|+|+|++|+||++|||||++..+|| .++++.+|+++|+.++|.+|+.++|+|||+.+||++|+||||++||+++||+|
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf-~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f 121 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 121 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSH-HHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCH-HHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence 39999999999999999999999999 99999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhc
Q 039246 85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGL 126 (253)
Q Consensus 85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~ 126 (253)
|++|+++|.+.|+. .|.++.+|+++++|++.|++.|++
T Consensus 122 LedI~~eF~~~y~~----~~~~a~pysf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 122 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHTT----GGGTCCTTTTHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHhhh----hhhccCCcchhHHHHHHHHHHHHH
Confidence 99999999999973 466778999998999999999997
No 5
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.94 E-value=3.2e-27 Score=199.80 Aligned_cols=158 Identities=11% Similarity=0.152 Sum_probs=126.8
Q ss_pred CceeEEEEEEe--C--CeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEE-EEEeCCEEEE
Q 039246 5 PGLVFYACIAK--G--SIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYA-FLINGPLTYF 69 (253)
Q Consensus 5 ~m~I~Ya~Var--g--~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh-~l~~dgi~yl 69 (253)
+|.|++..|.+ + .++|+...+.+ ++|...+++.+++++|+ ++|.+++.++|+|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 48899999998 2 26777654422 46645666799999987 67999999999999 8999999999
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCC--ccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCC
Q 039246 70 VIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDN--VSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVD 147 (253)
Q Consensus 70 citd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~--~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d 147 (253)
||||++||+++||+||++|+++|.+.|+.. .|.. +.++ .| +.|+++|++ |+ ||.+.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~---~~~~~~~~~~----~f-~~l~~~m~~---Y~-dp~~~---------- 137 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRI---DWPVGSPATI----HY-TALDGHLSR---YQ-NPREA---------- 137 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGG---GSTTCCTTTC----CC-CTHHHHHHH---TT-SGGGC----------
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccch---hhhccccccc----cc-HHHHHHHHH---hC-Cchhh----------
Confidence 999999999999999999999999999742 3433 2333 36 678888887 65 65542
Q ss_pred CcccccccccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccc
Q 039246 148 SSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYS 208 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~ 208 (253)
|++.+++ .||+||++||.+| |++|+.+| |+
T Consensus 138 ----------------d~l~~~q--------------~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~- 186 (199)
T 3kyq_A 138 ----------------DPMSKVQ--------------AELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFY- 186 (199)
T ss_dssp ----------------CCCHHHH--------------HHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHH-
T ss_pred ----------------hhHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-
Confidence 7888864 9999999999999 77788887 88
Q ss_pred cchHHHHH
Q 039246 209 GDHRQKAK 216 (253)
Q Consensus 209 ~~a~~l~r 216 (253)
++|+++++
T Consensus 187 k~a~~lns 194 (199)
T 3kyq_A 187 KTARKQNS 194 (199)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 68988874
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=1.1e-23 Score=169.62 Aligned_cols=123 Identities=8% Similarity=0.093 Sum_probs=101.1
Q ss_pred CCceeEEEEEEeC----CeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEE-EeCCEEE
Q 039246 4 NPGLVFYACIAKG----SIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL-INGPLTY 68 (253)
Q Consensus 4 ~~m~I~Ya~Varg----~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l-~~dgi~y 68 (253)
+.|.|+|.+|+|+ +++|+++++.+ ++|...+++++++++|+ +.|.|++.++|+|||+ .+||++|
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~ 81 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICG 81 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEE
Confidence 5689999999997 79999998765 56557889999999998 4799999999999999 7899999
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhccccCCCCCCC
Q 039246 69 FVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGLDLGFSSSSRS 136 (253)
Q Consensus 69 lcitd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~ 136 (253)
+||||++||+|+||+||++|+++|.+.|+.. .|.+ +.+++ +-.| +.|++.|++ |+ ||++
T Consensus 82 l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~---~~~~~~~~~~-~~~f-~~l~~~i~k---Yq-dp~~ 141 (144)
T 3bw6_A 82 VLITDKEYPVRPAYTLLNKILDEYLVAHPKE---EWADVTETND-ALKM-KQLDTYISK---YQ-DPSQ 141 (144)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSCGG---GTTTCSSCCG-GGCC-THHHHHHHH---TS-CC--
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHccch---hhhhcccccC-Ccch-HHHHHHHHH---hC-chhh
Confidence 9999999999999999999999999999742 3655 33221 2345 788888887 64 6654
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.77 E-value=7.7e-20 Score=135.87 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=63.7
Q ss_pred CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246 163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV 223 (253)
Q Consensus 163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~ 223 (253)
.|++.+++ +|++||++||.+| |++|+.+| |+ ++|++++|+|||+|+
T Consensus 4 ~d~l~~vq--------------~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~-~~A~~l~rkmwwkn~ 68 (91)
T 3hd7_A 4 MRRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNL 68 (91)
T ss_dssp THHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 38888864 9999999999999 89999988 99 699999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C 245 (253)
|+++++++++++++++|++++|
T Consensus 69 K~~iii~~iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 69 KMMIILGVICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.68 E-value=2.2e-18 Score=133.92 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=63.4
Q ss_pred CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246 163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV 223 (253)
Q Consensus 163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~ 223 (253)
.|++.+++ .||+||++||.+| |++|+.+| |+ ++|++++|+|||+|+
T Consensus 32 ~d~l~~vq--------------~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~-k~A~kl~rkmwwkn~ 96 (119)
T 2kog_A 32 NRRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNL 96 (119)
T ss_dssp CSHHHHSS--------------HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHH-HHHHHHHHHHSCHHH
T ss_pred chHHHHHH--------------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 38888864 9999999999999 88899988 99 699999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 039246 224 WIVLGLDLFVCAVLFGIWLWVC 245 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~~C 245 (253)
|+++++++++++++++|++++|
T Consensus 97 K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 97 KMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhee
Confidence 9999999999999999999999
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.15 E-value=1.9e-12 Score=92.30 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=39.0
Q ss_pred chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW 224 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K 224 (253)
|++.+++ .+|++|++||.+| |++|+.+| |+ ++|++|+|+|||+|+|
T Consensus 8 d~l~~vq--------------~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~~ww~n~K 72 (74)
T 2nps_A 8 DKIKHVQ--------------NQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFS-NRSKQLRRQMWWRGCK 72 (74)
T ss_dssp SSSHHHH--------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC----
T ss_pred hHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 7888864 9999999999999 89999988 99 6999999999999999
Q ss_pred HH
Q 039246 225 IV 226 (253)
Q Consensus 225 ~~ 226 (253)
+.
T Consensus 73 ~~ 74 (74)
T 2nps_A 73 IK 74 (74)
T ss_dssp --
T ss_pred cC
Confidence 74
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.11 E-value=5.1e-12 Score=94.38 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=42.1
Q ss_pred chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW 224 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K 224 (253)
+++.+++ .||++|++||.+| |++|..+| |+ ++|++|+|+|||+|+|
T Consensus 30 d~l~~vq--------------~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~-k~A~kl~rkmwwkn~K 94 (96)
T 1sfc_A 30 RRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNLK 94 (96)
T ss_dssp HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTC-
T ss_pred cHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 8888865 9999999999999 88999988 99 6999999999999999
Q ss_pred HH
Q 039246 225 IV 226 (253)
Q Consensus 225 ~~ 226 (253)
++
T Consensus 95 ~~ 96 (96)
T 1sfc_A 95 MM 96 (96)
T ss_dssp --
T ss_pred cC
Confidence 74
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.09 E-value=3.4e-12 Score=92.33 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=38.3
Q ss_pred CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246 163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV 223 (253)
Q Consensus 163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~ 223 (253)
.+++.+++ .+|++|++||.+| |+.|+.+| |+ ++|++|+|+|||+|+
T Consensus 14 ~d~l~~vq--------------~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~-k~A~~l~rk~wwkn~ 78 (80)
T 1l4a_A 14 SKRLQQTQ--------------AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFE-ASAGKLKRKFWWKNC 78 (80)
T ss_dssp SCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTT-HHHHHHHHHCC----
T ss_pred ccHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 38888865 9999999999999 88899988 99 699999999999999
Q ss_pred hH
Q 039246 224 WI 225 (253)
Q Consensus 224 K~ 225 (253)
|+
T Consensus 79 K~ 80 (80)
T 1l4a_A 79 KM 80 (80)
T ss_dssp --
T ss_pred cC
Confidence 95
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.44 E-value=1.1e-08 Score=70.01 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHH
Q 039246 184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIW 219 (253)
Q Consensus 184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mw 219 (253)
+.+|++|++||.+| |++|+.+| |+ ++|++|+|+||
T Consensus 8 q~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~mW 61 (61)
T 3b5n_A 8 QAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFK-RGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhC
Confidence 49999999999999 89999988 99 69999999999
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.41 E-value=1.2e-08 Score=70.15 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=37.7
Q ss_pred chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHH
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIW 219 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mw 219 (253)
|++.+++ .+|++|++||.+| |+.|+.+| |+ ++|++++|+||
T Consensus 4 d~l~~v~--------------~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~mW 63 (63)
T 1n7s_A 4 RRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred cHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhC
Confidence 7888864 9999999999999 88999988 99 69999999998
No 14
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.72 E-value=1.8e-06 Score=59.12 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=31.2
Q ss_pred ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHH
Q 039246 184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQI 218 (253)
Q Consensus 184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~m 218 (253)
+.++++|++||.+| |++|+.+| |+ +.|++|++|+
T Consensus 10 ~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~-~~A~~l~~Ky 62 (63)
T 1urq_A 10 KGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFS-KHAHEMMLKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 39999999999999 89999998 99 6999999885
No 15
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.69 E-value=0.00022 Score=58.82 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=73.4
Q ss_pred ceeEEEEEEeCCeEEEeecCCCCCh---hHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcch
Q 039246 6 GLVFYACIAKGSIILGEFSSKEPAI---SETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGE 80 (253)
Q Consensus 6 m~I~Ya~Varg~~iLae~s~~~~nf---~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~i 80 (253)
|.=..+.+.+|++||..|+.....+ ...+++.+|-.=.. +..+|.+|+|..++..+| +++|+++-..-.+-.-
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 4446789999999999996443333 14555555433222 234788999999999976 6999999777665555
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCc----cccccccchHHHHHHHH
Q 039246 81 SFWFLNRVKSAFEEIFETRSILNFDNV----SNHCFQAHFDAVFCEIM 124 (253)
Q Consensus 81 aF~FL~dI~~~F~~~~~~~~~~~~~~~----~~~~l~~~F~~~L~~~m 124 (253)
.=.||++++..|...|.+... +.... .+..++..|...+++.-
T Consensus 88 iD~LL~~v~~~Fv~~Y~~~L~-~~~~~~~~~~~~~Fd~~F~~~l~~~e 134 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYRTEIQ-QQSALSLLNGTFDFQNDFLRLLREAE 134 (185)
T ss_dssp HHHHHHHHHHHHHHHTHHHHH-SSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cccccccccccCchhHHHHHHHHHHH
Confidence 557999999999999975311 10111 12245556666666543
No 16
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.54 E-value=3.7e-06 Score=57.95 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=31.0
Q ss_pred chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHH
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAK 216 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r 216 (253)
+++.+++ .+|++|++||.+| |++|+.+| |+ ++|++|+|
T Consensus 9 d~l~~vq--------------~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~-k~A~~l~r 65 (65)
T 1gl2_A 9 DRVRNLQ--------------SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFK-TTSQKVAR 65 (65)
T ss_dssp -CHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC---
T ss_pred hHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHhcC
Confidence 8888864 9999999999999 88999988 99 69999986
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=94.75 E-value=0.01 Score=36.08 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=19.3
Q ss_pred chhhhcccccCCccccccccccccccccccccCChHH
Q 039246 164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCDDVT 200 (253)
Q Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~Nt~~ 200 (253)
+++.+++ .||++|++||.+|-+.
T Consensus 9 d~l~~vq--------------~qvdeVk~IM~~NIdk 31 (38)
T 3fie_C 9 RRLQQTQ--------------AQVDEVVDIMRVNVDK 31 (38)
T ss_dssp CSSCEES--------------CCCCCSCCCCTTTHHH
T ss_pred hHHHHHH--------------HHHHHHHHHHHHhHHH
Confidence 7888854 9999999999999443
No 18
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.65 E-value=3.6 Score=37.55 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=59.5
Q ss_pred ceeEEEEEEe-CC-eEEEee-cC-CCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchH
Q 039246 6 GLVFYACIAK-GS-IILGEF-SS-KEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGES 81 (253)
Q Consensus 6 m~I~Ya~Var-g~-~iLae~-s~-~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~ia 81 (253)
|+|...+|.. .+ .+|+-+ .. ...+.....-+.++.+-.....--.+..+++.|-|...+++.|+|+++.+..--..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 4455555544 44 444433 32 22222134444555432211112366789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 039246 82 FWFLNRVKSAFEEIFE 97 (253)
Q Consensus 82 F~FL~dI~~~F~~~~~ 97 (253)
+.||..+.+-+...++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988887774
No 19
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.41 E-value=12 Score=29.34 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=43.5
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 49 FSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 49 ~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
-.+..+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999999999888887774
No 20
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=83.42 E-value=13 Score=28.34 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=43.6
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 49 FSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 49 ~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
-....+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999998899999999999999999999999999988887775
No 21
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=81.73 E-value=17 Score=28.38 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred eeEEEEEEe--CCeEEEeecCCC-CChh--HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchH
Q 039246 7 LVFYACIAK--GSIILGEFSSKE-PAIS--ETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGES 81 (253)
Q Consensus 7 ~I~Ya~Var--g~~iLae~s~~~-~nf~--~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~ia 81 (253)
+|-+.+|-. |.++|+-|=... .+.. ..+.+.+..++.+.+ .-....+++.|.|...+++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 344555543 778888764321 1210 222334444443323 2467789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 039246 82 FWFLNRVKSAFEEIF 96 (253)
Q Consensus 82 F~FL~dI~~~F~~~~ 96 (253)
+.||..+-+-+...|
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998888
No 22
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=79.27 E-value=2.4 Score=32.75 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=32.1
Q ss_pred CCeEEEEEE---eCCEEEEEEEcCCCCcchHHHHHHHHHH
Q 039246 54 CKRTYAFLI---NGPLTYFVIHDEDLHKGESFWFLNRVKS 90 (253)
Q Consensus 54 ~~~~fh~l~---~dgi~ylcitd~~~~~~iaF~FL~dI~~ 90 (253)
|+|-=.|-. +++.+|+|.|..+.|+-+|...|.++++
T Consensus 75 DGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 75 DGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp SSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred ccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 899856655 3678999999999999999999999975
No 23
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=75.73 E-value=29 Score=31.54 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=43.6
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 49 FSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 49 ~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
-.+..+++.|-|...+++.|+|+++.+..--..+.||..+.+-+...++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999999999888887775
No 24
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=66.80 E-value=5.7 Score=29.31 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 039246 83 WFLNRVKSAFE 93 (253)
Q Consensus 83 ~FL~dI~~~F~ 93 (253)
+-|.+|+.+-.
T Consensus 11 ~~l~~i~eR~~ 21 (109)
T 3hd7_B 11 QALSEIETRHS 21 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556655544
No 25
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=62.53 E-value=2.6 Score=28.46 Aligned_cols=32 Identities=13% Similarity=-0.076 Sum_probs=20.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 039246 219 WKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCI 251 (253)
Q Consensus 219 ww~~~K~~i~i~~vv~~vi~~i~~~~C~Gf~C~ 251 (253)
||...++.|++++++.+++|+-+.++| +-+|.
T Consensus 4 ~~~~p~~LivlGg~~~lll~~glcI~c-cvkcr 35 (70)
T 2klu_A 4 VPRGSMALIVLGGVAGLLLFIGLGIFF-SVRSR 35 (70)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHSS
T ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHH-hhHHH
Confidence 455555556777777777777777776 33443
No 26
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=62.12 E-value=5 Score=21.47 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=11.3
Q ss_pred chHHHHHHHHHhhh
Q 039246 210 DHRQKAKQIWKKHV 223 (253)
Q Consensus 210 ~a~~l~r~mww~~~ 223 (253)
+-+.+||+||.++.
T Consensus 3 s~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 3 SIQDLRRRFFLHHL 16 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45679999999874
No 27
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=54.88 E-value=13 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=12.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 039246 220 KKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCI 251 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi~~i~~~~C~Gf~C~ 251 (253)
|+.+++.-+|.++|++++- |+++.+|-.+|.
T Consensus 16 Y~tLRigGLifA~vLfi~G-I~iilS~kcrCk 46 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCVIG-IIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHTTTC----
T ss_pred hHHheeccchhHHHHHHHH-HHHHHcCccccC
Confidence 4555555444444444433 323344445774
No 28
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=48.06 E-value=25 Score=25.72 Aligned_cols=7 Identities=14% Similarity=-0.083 Sum_probs=2.9
Q ss_pred HHHhcCC
Q 039246 241 WLWVCRG 247 (253)
Q Consensus 241 ~~~~C~G 247 (253)
+..++|+
T Consensus 100 ~~~~~~~ 106 (109)
T 3hd7_B 100 IASTIGG 106 (109)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 3344533
No 29
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=46.79 E-value=1.7 Score=38.35 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=14.5
Q ss_pred ccccccccccccCChHH
Q 039246 184 FSDVNEEKKVDVCDDVT 200 (253)
Q Consensus 184 ~~~v~~vk~im~~Nt~~ 200 (253)
++||++|++||.+|-+.
T Consensus 286 q~~i~ev~~im~~ni~~ 302 (310)
T 3zym_A 286 QSEVEGVKNIMTQNVER 302 (310)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 49999999999999443
No 30
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=41.85 E-value=15 Score=24.78 Aligned_cols=18 Identities=0% Similarity=-0.391 Sum_probs=8.5
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 039246 220 KKHVWIVLGLDLFVCAVL 237 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi 237 (253)
|+.+++.-++.++|++++
T Consensus 14 Y~tLRigGLifA~vLfi~ 31 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLCIA 31 (67)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHHHH
Confidence 455555444444444333
No 31
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=38.93 E-value=6.4 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Q 039246 220 KKHVWIVLGLDLFVCAVLFGIWL 242 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi~~i~~ 242 (253)
++...+.+++.++++++++++|+
T Consensus 102 ~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 102 SKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555553
No 32
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=38.61 E-value=43 Score=20.32 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCCcc
Q 039246 234 CAVLFGIWLWVCRGFR 249 (253)
Q Consensus 234 ~~vi~~i~~~~C~Gf~ 249 (253)
++.+++..+.=||=|+
T Consensus 23 lL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 23 LLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCccc
Confidence 3334445567894454
No 33
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.49 E-value=22 Score=22.96 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcCCcc
Q 039246 233 VCAVLFGIWLWVCRGFR 249 (253)
Q Consensus 233 v~~vi~~i~~~~C~Gf~ 249 (253)
+++.+++..++-||-|+
T Consensus 24 llL~li~~~LwK~GFFk 40 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCccc
Confidence 33334445577884453
No 34
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.10 E-value=25 Score=22.66 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCc
Q 039246 234 CAVLFGIWLWVCRGF 248 (253)
Q Consensus 234 ~~vi~~i~~~~C~Gf 248 (253)
++.+++..++=||-|
T Consensus 22 LL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 22 LLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcc
Confidence 333444556789445
No 35
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=34.38 E-value=87 Score=23.89 Aligned_cols=85 Identities=7% Similarity=0.028 Sum_probs=54.1
Q ss_pred HHHHhcCCC---CCCeeEEEeCCeEEEEEEe-CCEEEEEEEcCCCCcchHHHHHHHHH-HHHHHHhh-hhcccccCCc-c
Q 039246 36 QECIDKTPR---HHLMFSHTVCKRTYAFLIN-GPLTYFVIHDEDLHKGESFWFLNRVK-SAFEEIFE-TRSILNFDNV-S 108 (253)
Q Consensus 36 ~~iL~kip~---~~~k~s~~~~~~~fh~l~~-dgi~ylcitd~~~~~~iaF~FL~dI~-~~F~~~~~-~~~~~~~~~~-~ 108 (253)
..+.+++.| ..+-.++..++|..|+... .|+=|+.++|...+. .=.||.+|. +.|...-- ++ .-.. .
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNP----fy~~~~ 119 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNP----LCPLGQ 119 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCT----TSCTTS
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCC----CCCCCC
Confidence 345556543 2456788889997777774 799999999987543 336788888 56665221 11 0011 1
Q ss_pred ccccccchHHHHHHHHhcc
Q 039246 109 NHCFQAHFDAVFCEIMGLD 127 (253)
Q Consensus 109 ~~~l~~~F~~~L~~~m~~~ 127 (253)
|- -...|+..++++++..
T Consensus 120 pI-~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 120 TV-QSELFRSRLDSYVRSL 137 (145)
T ss_dssp CC-CCHHHHHHHHHHHTTS
T ss_pred ce-ecHHHHHHHHHHHHhC
Confidence 11 1256999999998863
No 36
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=32.77 E-value=43 Score=18.06 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 039246 228 GLDLFVCAVLFGIWL 242 (253)
Q Consensus 228 ~i~~vv~~vi~~i~~ 242 (253)
|+..+...+++.+|+
T Consensus 11 Iviav~aaVllylW~ 25 (26)
T 3j1r_A 11 ILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444553
No 37
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=31.53 E-value=1.2e+02 Score=23.50 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHhcCCCC---CCeeEEEeCCeEEEEEEe-CCEEEEEEEcCCCCcchHHHHHHHHHH-HHHH
Q 039246 36 QECIDKTPRH---HLMFSHTVCKRTYAFLIN-GPLTYFVIHDEDLHKGESFWFLNRVKS-AFEE 94 (253)
Q Consensus 36 ~~iL~kip~~---~~k~s~~~~~~~fh~l~~-dgi~ylcitd~~~~~~iaF~FL~dI~~-~F~~ 94 (253)
+.+.+++.|. +.-..+..+.|..|+..- .|+-|++++|...+. .=.+|.+|.. .|..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 4556666543 456777889998888775 799999999976443 2356888886 6654
No 38
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=29.28 E-value=33 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 039246 213 QKAKQIWKKHVWIVLGLDLFVCAVLFG 239 (253)
Q Consensus 213 ~l~r~mww~~~K~~i~i~~vv~~vi~~ 239 (253)
+-.+|-|++++-.++++++++++++++
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~~~ 52 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIALFI 52 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655555554444444443
No 39
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=27.50 E-value=2.6e+02 Score=23.04 Aligned_cols=84 Identities=7% Similarity=-0.011 Sum_probs=54.1
Q ss_pred HHHHhcCCCC---CCeeEEEeCCeEEEEEEe-CCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh-hhcccccCCc-cc
Q 039246 36 QECIDKTPRH---HLMFSHTVCKRTYAFLIN-GPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE-TRSILNFDNV-SN 109 (253)
Q Consensus 36 ~~iL~kip~~---~~k~s~~~~~~~fh~l~~-dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~-~~~~~~~~~~-~~ 109 (253)
..+-+++.|. .+-.+++.++|..|+... .|+-|+.++|.. ..-.-.||.+|.+.|...-- +. .-.. .|
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNP----FY~~~~p 192 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNP----FYSLEMP 192 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCT----TCCTTSC
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCC----CCCCCCc
Confidence 3444566442 245678889998887775 799999999986 33444689999977765421 21 1011 11
Q ss_pred cccccchHHHHHHHHhc
Q 039246 110 HCFQAHFDAVFCEIMGL 126 (253)
Q Consensus 110 ~~l~~~F~~~L~~~m~~ 126 (253)
- -...|+..++++++.
T Consensus 193 I-~s~~Fd~~v~~l~~~ 208 (219)
T 2j3t_D 193 I-RCELFDQNLKLALEV 208 (219)
T ss_dssp C-CCHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHHHH
Confidence 1 124699999999886
No 40
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=26.07 E-value=2.1e+02 Score=23.57 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=34.9
Q ss_pred CeeEEEeCCeEEEEEE-eCCEEEEEEEcCCCCc----------------------chHHHHHHHHHHHHHH
Q 039246 47 LMFSHTVCKRTYAFLI-NGPLTYFVIHDEDLHK----------------------GESFWFLNRVKSAFEE 94 (253)
Q Consensus 47 ~k~s~~~~~~~fh~l~-~dgi~ylcitd~~~~~----------------------~iaF~FL~dI~~~F~~ 94 (253)
+-..+..+.|..|+.. -.|+=|++++|...+. ...-.||.+|.+.|.+
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5677888888777766 4799999999987622 3345788888876665
No 41
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=25.74 E-value=85 Score=17.92 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039246 224 WIVLGLDLFVCAVLFGI 240 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i 240 (253)
|-.+++..+|++++.+|
T Consensus 11 KrLlivVvVvVlvVvVi 27 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVI 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHH
Confidence 33344444444333333
No 42
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=23.97 E-value=1.5e+02 Score=21.65 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEE
Q 039246 5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLI 62 (253)
Q Consensus 5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~ 62 (253)
..-|+|..|+++. +|+++++.|.- |.-+.+-.++++++..||.-.
T Consensus 83 sdgiiyltiskdn--icqfsdekgeq-----------idinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 83 SDGIIYLTISKDN--ICQFSDEKGEQ-----------IDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp SCEEEEEEECTTC--CEEEECTTSCE-----------ECCCSSSSEEEETTEEEEEEE
T ss_pred CCcEEEEEEecCc--ceecccccCcE-----------eeccccccceeecceEeehhc
Confidence 3468999999886 48888877754 222334569999999999865
No 43
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.47 E-value=86 Score=21.21 Aligned_cols=16 Identities=6% Similarity=-0.390 Sum_probs=6.9
Q ss_pred HhhhhHHHHHHHHHHH
Q 039246 220 KKHVWIVLGLDLFVCA 235 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~ 235 (253)
|+.+++.-++.++|++
T Consensus 13 Y~tLRiGGLifA~vLf 28 (72)
T 2jo1_A 13 YQSLQIGGLVIAGILF 28 (72)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHhhccchHHHHHHH
Confidence 4445554444333333
No 44
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.95 E-value=1.1e+02 Score=18.19 Aligned_cols=20 Identities=25% Similarity=0.023 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 039246 224 WIVLGLDLFVCAVLFGIWLW 243 (253)
Q Consensus 224 K~~i~i~~vv~~vi~~i~~~ 243 (253)
.+.++|.+|.+.++-.|+++
T Consensus 11 ~i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45666777777666655543
No 45
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=20.86 E-value=76 Score=17.94 Aligned_cols=20 Identities=5% Similarity=-0.400 Sum_probs=9.1
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 039246 220 KKHVWIVLGLDLFVCAVLFG 239 (253)
Q Consensus 220 w~~~K~~i~i~~vv~~vi~~ 239 (253)
|+..++--++.+++++++-+
T Consensus 7 y~tLrigGLi~a~vLfi~gi 26 (31)
T 3n2f_G 7 YETVRNGGLIFAALAFIVGL 26 (31)
T ss_dssp HHHHHHHHTTTHHHHHHHHH
T ss_pred hHHHhhcchhHHHHHHHHHH
Confidence 45555544444444444433
Done!