Query 039246
Match_columns 253
No_of_seqs 137 out of 744
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 12:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ifqa_ d.110.4.1 (A:) Sec22b 99.9 1.6E-26 1.2E-30 180.3 16.1 115 7-126 1-125 (127)
2 d1ioua_ d.110.4.1 (A:) Synapto 99.7 5.6E-18 4.1E-22 133.7 9.7 122 6-136 1-137 (140)
3 d2fh5a1 d.110.4.4 (A:1-129) Si 98.0 2.2E-05 1.6E-09 59.5 9.7 113 8-123 3-124 (129)
4 d2vglm2 d.110.4.2 (M:1-141) Mu 94.5 0.32 2.3E-05 35.7 11.7 50 48-97 45-94 (141)
5 d2vgls_ d.110.4.2 (S:) Sigma2 93.2 0.45 3.3E-05 35.0 10.4 48 50-97 49-96 (142)
6 d2j3wa1 d.110.4.3 (A:1-140) Se 49.1 40 0.0029 23.9 12.2 116 6-127 3-137 (140)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 43.2 12 0.00087 19.7 2.9 18 227-244 8-25 (33)
8 d1t1ua2 c.43.1.3 (A:402-616) C 23.7 1E+02 0.0073 23.3 6.8 43 54-96 167-210 (215)
9 d1xl7a2 c.43.1.3 (A:393-610) P 19.2 1.5E+02 0.011 22.2 7.1 43 54-96 169-212 (218)
10 d1k8rb_ d.15.1.5 (B:) Protein 16.5 50 0.0036 22.0 2.9 17 26-43 17-33 (95)
No 1
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=1.6e-26 Score=180.33 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=100.6
Q ss_pred eeEEEEEEeC--CeEEEeecCCCCChh------HHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCC
Q 039246 7 LVFYACIAKG--SIILGEFSSKEPAIS------ETLAQECIDKTPR-HHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLH 77 (253)
Q Consensus 7 ~I~Ya~Varg--~~iLae~s~~~~nf~------~~ia~~iL~kip~-~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~ 77 (253)
+|+|++|||+ ++||||+++.+++.. ...++.+|+++++ .+.|.|+..++|+|||+++||++||||||+++|
T Consensus 1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~ 80 (127)
T d1ifqa_ 1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 80 (127)
T ss_dssp CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence 5899999994 589999987665431 4568899999975 468999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhc
Q 039246 78 KGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGL 126 (253)
Q Consensus 78 ~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~ 126 (253)
+++||+||+||+++|.+.|+. .+.+ ..||++. +|+.+|++.++.
T Consensus 81 ~~laF~fLeei~~eF~~~y~~----~i~~~~rpy~Fi-~Fd~~iqk~k~~ 125 (127)
T d1ifqa_ 81 KKLAFAYLEDLHSEFDEQHGK----KVPTVSRPYSFI-EFDTFIQKTKKL 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----TTTTCCSTTTTG-GGHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhh----hhhcccCCcchH-HHHHHHHHHHHh
Confidence 999999999999999999974 3555 5699997 799999999885
No 2
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.73 E-value=5.6e-18 Score=133.67 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=94.9
Q ss_pred ceeEEEEEEe----CCeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEE-EEEeCCEEEEE
Q 039246 6 GLVFYACIAK----GSIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYA-FLINGPLTYFV 70 (253)
Q Consensus 6 m~I~Ya~Var----g~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh-~l~~dgi~ylc 70 (253)
|.|++..|.+ +.++|+...+.+ .+|...+++.+.++++++ .|.+++.++|+|| |+.++|++|+|
T Consensus 1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g-~r~sv~~~~y~~h~yv~~~gl~~l~ 79 (140)
T d1ioua_ 1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-ERQSIEEGNYIGHVYARSEGICGVL 79 (140)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSS-SEEEEEETTEEEEEECCSSSCEEEE
T ss_pred CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCC-ceEEEEcCCeEEEEEEeeCCEEEEE
Confidence 7788888888 237777766533 243366889999999884 6999999999999 67789999999
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCC
Q 039246 71 IHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRS 136 (253)
Q Consensus 71 itd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~ 136 (253)
|||.+||+|+||.||++|.++|.+.|+.. .|.. ...+.+..+.+.|.++|++ |. ||.+
T Consensus 80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~---~~~~-i~~~~~~~~~~~l~~~l~k---YQ-dP~~ 137 (140)
T d1ioua_ 80 ITDKQYPVRPAYTLLNKILDEYLVAHPKE---EWAD-VTETNDALKMKQLDTYISK---YQ-DPSQ 137 (140)
T ss_dssp EBCTTSCHHHHHHHHHHHHHHHHHSSCHH---HHTT-CSCCCTTTSCHHHHHHHHH---TT-SSCG
T ss_pred EECCCcchHHHHHHHHHHHHHHHHHcChH---hhhh-hhccccccchHHHHHHHHH---hC-chhh
Confidence 99999999999999999999999999742 3332 2222333466889999987 64 7764
No 3
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.97 E-value=2.2e-05 Score=59.45 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=73.2
Q ss_pred eEEEEEEeCCeEEEeecCCCCCh---hHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHH
Q 039246 8 VFYACIAKGSIILGEFSSKEPAI---SETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESF 82 (253)
Q Consensus 8 I~Ya~Varg~~iLae~s~~~~nf---~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF 82 (253)
=.++.+.+|++||..|+....++ ...+++.++-.=. .+..+|..|+|..++..+| +++|+++-..-..-.-.=
T Consensus 3 D~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER--~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yvd 80 (129)
T d2fh5a1 3 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER--GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 80 (129)
T ss_dssp SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred cEEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheecc--cCCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHHH
Confidence 35788999999999987544444 1444444443222 2345688899999999976 699999977776666666
Q ss_pred HHHHHHHHHHHHHhhhhcccccCC----ccccccccchHHHHHHH
Q 039246 83 WFLNRVKSAFEEIFETRSILNFDN----VSNHCFQAHFDAVFCEI 123 (253)
Q Consensus 83 ~FL~dI~~~F~~~~~~~~~~~~~~----~~~~~l~~~F~~~L~~~ 123 (253)
.||++++..|...|++... .... ..++.++.+|...|++.
T Consensus 81 ~lL~~i~~~F~~~y~~~l~-~~~~~~~~~~~~~Fd~~F~~~l~~~ 124 (129)
T d2fh5a1 81 KLIDDVHRLFRDKYRTEIQ-QQSALSLLNGTFDFQNDFLRLLREA 124 (129)
T ss_dssp HHHHHHHHHHHHHTHHHHH-SSSTHHHHSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-ccccccccccccchHHHHHHHHHHH
Confidence 7999999999999985411 1111 12445556666666554
No 4
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=94.46 E-value=0.32 Score=35.69 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=45.5
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 48 MFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 48 k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
.-.+..+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 45 ~pi~~~~~~~~~~~~~~~l~~v~v~~~~~n~l~~~e~L~~~~~~l~~y~~ 94 (141)
T d2vglm2 45 SPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (141)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999987774
No 5
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.17 E-value=0.45 Score=35.00 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246 50 SHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE 97 (253)
Q Consensus 50 s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~ 97 (253)
.+..+++.|-|...+++.|+++++.+.+.-..+.||..+.+-+...++
T Consensus 49 i~~~~~~~~vy~~~~~l~~v~~~~~~~n~l~~~e~L~~~~~~l~~~~~ 96 (142)
T d2vgls_ 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEECCEEEEEEEECCEEEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence 778899999999999999999999999999999999999998887775
No 6
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.07 E-value=40 Score=23.86 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=67.8
Q ss_pred ceeEEEEEEeCCeEEEee--cCCCC-C----------hhHHHHHHHHhcCCC----CCCeeEEEeCCeEEEEEE-eCCEE
Q 039246 6 GLVFYACIAKGSIILGEF--SSKEP-A----------ISETLAQECIDKTPR----HHLMFSHTVCKRTYAFLI-NGPLT 67 (253)
Q Consensus 6 m~I~Ya~Varg~~iLae~--s~~~~-n----------f~~~ia~~iL~kip~----~~~k~s~~~~~~~fh~l~-~dgi~ 67 (253)
.+..++.|.+++.+|.|. +.... + |..--+..+++.+.+ ..-+..+..++|..|+.. ..|+=
T Consensus 3 ~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~K 82 (140)
T d2j3wa1 3 GSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMR 82 (140)
T ss_dssp CCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred cEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcE
Confidence 356778899988887764 32211 1 101223344443322 122345667888777766 58999
Q ss_pred EEEEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCc-cccccccchHHHHHHHHhcc
Q 039246 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNV-SNHCFQAHFDAVFCEIMGLD 127 (253)
Q Consensus 68 ylcitd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~-~~~~l~~~F~~~L~~~m~~~ 127 (253)
|+.++|..-+.. .-.|++++.+.|....-++ .-.. .|- -...|+..++++.+.|
T Consensus 83 fvl~td~~~~~~-i~~~~~~v~~lYv~~v~NP----fy~~~~pI-~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 83 FIMLHDVRQEDG-IKNFFTDVYDLYIKFAMNP----FYEPNSPI-RSSAFDRKVQFLGKKH 137 (140)
T ss_dssp EEEEESSCCHHH-HHHHHHHHHHHHHHHHHST----TCCTTCCC-CCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcchH-HHHHHHHHHHHHHHHhhCc----cCCCCCcc-cCHHHHHHHHHHHHHH
Confidence 999998765433 3468888888887544322 1111 111 1347999999988763
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=43.16 E-value=12 Score=19.67 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 039246 227 LGLDLFVCAVLFGIWLWV 244 (253)
Q Consensus 227 i~i~~vv~~vi~~i~~~~ 244 (253)
+.+.+++.++|++.|+.+
T Consensus 8 l~vi~il~l~ilvfw~gv 25 (33)
T d1xmec1 8 LAVILVLTLTILVFWLGV 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555666667654
No 8
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.66 E-value=1e+02 Score=23.26 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCeEEEEEEe-CCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHh
Q 039246 54 CKRTYAFLIN-GPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIF 96 (253)
Q Consensus 54 ~~~~fh~l~~-dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~ 96 (253)
++|-.+|.+. |.+.|.+-+-.+.+.+-+-.|.+.|.+......
T Consensus 167 dGyGi~Y~i~~d~i~f~iss~~s~~~t~~~~f~~~L~~al~~m~ 210 (215)
T d1t1ua2 167 NGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMR 210 (215)
T ss_dssp TCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCEEEEEEEeCCCCcccCHHHHHHHHHHHHHHHH
Confidence 7899999996 667777777788888888888888887666543
No 9
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.20 E-value=1.5e+02 Score=22.16 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCeEEEEEEeCCEEEEEEEc-CCCCcchHHHHHHHHHHHHHHHh
Q 039246 54 CKRTYAFLINGPLTYFVIHD-EDLHKGESFWFLNRVKSAFEEIF 96 (253)
Q Consensus 54 ~~~~fh~l~~dgi~ylcitd-~~~~~~iaF~FL~dI~~~F~~~~ 96 (253)
|+|=.+|.+.++-+.++|+. .+.|.+-+=.|.+.|++......
T Consensus 169 dGyGi~Y~i~~d~i~~~vss~~s~~~t~~~~f~~~L~~al~dm~ 212 (218)
T d1xl7a2 169 NGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMI 212 (218)
T ss_dssp TCEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCEEEEEEEecCCCCccCHHHHHHHHHHHHHHHH
Confidence 78999999976555566664 78888878778888877665543
No 10
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=16.55 E-value=50 Score=22.03 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=14.0
Q ss_pred CCCChhHHHHHHHHhcCC
Q 039246 26 KEPAISETLAQECIDKTP 43 (253)
Q Consensus 26 ~~~nf~~~ia~~iL~kip 43 (253)
.+|.| .++.+..|+|+.
T Consensus 17 i~gC~-~ai~~~~LkK~~ 33 (95)
T d1k8rb_ 17 SRGDY-QKTLAIALKKFS 33 (95)
T ss_dssp CCSCH-HHHHHHHHHHHT
T ss_pred eccCH-HHHHHHHHHhcC
Confidence 46888 789999999875
Done!