Query 039247
Match_columns 365
No_of_seqs 293 out of 1766
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 1.6E-17 3.5E-22 163.6 7.5 74 111-185 206-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 3.9E-14 8.6E-19 100.0 1.6 43 136-179 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 1.9E-12 4.2E-17 122.6 6.2 75 109-183 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.6E-11 3.4E-16 96.4 3.3 45 134-179 19-73 (73)
5 COG5540 RING-finger-containing 99.1 2.8E-11 6E-16 116.6 2.9 51 133-184 322-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 7.2E-11 1.6E-15 116.4 5.4 68 114-184 269-346 (491)
7 cd00162 RING RING-finger (Real 98.8 2.4E-09 5.2E-14 73.5 3.4 44 136-182 1-45 (45)
8 PF12861 zf-Apc11: Anaphase-pr 98.8 2.3E-09 4.9E-14 86.3 3.3 52 132-183 19-82 (85)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.1E-09 4.5E-14 77.9 2.7 46 134-183 2-48 (50)
10 PLN03208 E3 ubiquitin-protein 98.8 3.2E-09 6.9E-14 97.5 4.1 51 131-185 15-81 (193)
11 PHA02926 zinc finger-like prot 98.8 3.4E-09 7.4E-14 98.8 2.5 54 130-183 166-230 (242)
12 PF13923 zf-C3HC4_2: Zinc fing 98.7 7E-09 1.5E-13 71.4 2.5 39 137-178 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 98.7 6.4E-09 1.4E-13 97.3 2.8 51 132-186 45-98 (230)
14 KOG0317 Predicted E3 ubiquitin 98.7 9.1E-09 2E-13 99.0 2.8 48 134-185 239-286 (293)
15 KOG0802 E3 ubiquitin ligase [P 98.7 7.4E-09 1.6E-13 109.0 2.0 51 133-184 290-342 (543)
16 PF14634 zf-RING_5: zinc-RING 98.6 5.2E-08 1.1E-12 68.9 3.2 44 136-180 1-44 (44)
17 KOG0320 Predicted E3 ubiquitin 98.5 3.6E-08 7.8E-13 89.0 2.4 52 132-185 129-180 (187)
18 smart00184 RING Ring finger. E 98.5 6.9E-08 1.5E-12 63.9 3.1 38 137-178 1-39 (39)
19 smart00504 Ubox Modified RING 98.5 9.6E-08 2.1E-12 71.5 3.8 46 135-184 2-47 (63)
20 PF15227 zf-C3HC4_4: zinc fing 98.5 9.5E-08 2.1E-12 67.2 2.9 38 137-178 1-42 (42)
21 PF00097 zf-C3HC4: Zinc finger 98.5 1.1E-07 2.4E-12 65.6 2.6 39 137-178 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.4 1.4E-07 3.1E-12 95.6 4.0 52 130-185 22-73 (397)
23 COG5194 APC11 Component of SCF 98.3 2.7E-07 5.9E-12 73.1 2.8 48 137-184 34-82 (88)
24 KOG1493 Anaphase-promoting com 98.3 1.5E-07 3.2E-12 74.0 -0.3 51 133-183 19-81 (84)
25 KOG0828 Predicted E3 ubiquitin 98.2 4.2E-07 9.1E-12 92.8 1.8 51 133-184 570-635 (636)
26 COG5219 Uncharacterized conser 98.2 2.7E-07 5.8E-12 99.8 -0.4 70 114-183 1449-1523(1525)
27 KOG1734 Predicted RING-contain 98.2 3.8E-07 8.3E-12 87.1 0.6 52 132-184 222-282 (328)
28 COG5574 PEX10 RING-finger-cont 98.1 1.6E-06 3.4E-11 82.8 2.1 48 134-185 215-264 (271)
29 KOG0287 Postreplication repair 98.1 9E-07 2E-11 86.9 0.2 51 132-186 21-71 (442)
30 smart00744 RINGv The RING-vari 98.0 4.3E-06 9.3E-11 60.8 2.8 42 136-179 1-49 (49)
31 KOG0804 Cytoplasmic Zn-finger 98.0 2.8E-06 6E-11 86.2 2.1 50 131-183 172-222 (493)
32 COG5432 RAD18 RING-finger-cont 98.0 2.8E-06 6E-11 82.1 1.7 51 130-184 21-71 (391)
33 PF04564 U-box: U-box domain; 98.0 4E-06 8.6E-11 65.6 2.1 48 134-185 4-52 (73)
34 KOG2164 Predicted E3 ubiquitin 98.0 4.3E-06 9.3E-11 86.1 2.8 50 134-187 186-240 (513)
35 KOG2930 SCF ubiquitin ligase, 97.9 3.9E-06 8.5E-11 69.6 2.0 50 134-183 46-108 (114)
36 PF13445 zf-RING_UBOX: RING-ty 97.9 8.2E-06 1.8E-10 57.8 2.5 38 137-176 1-43 (43)
37 PF11793 FANCL_C: FANCL C-term 97.9 3.3E-06 7.1E-11 65.8 0.5 49 135-183 3-66 (70)
38 KOG0827 Predicted E3 ubiquitin 97.9 3.9E-06 8.3E-11 83.8 1.0 45 135-180 5-53 (465)
39 TIGR00570 cdk7 CDK-activating 97.8 1.5E-05 3.2E-10 78.3 4.0 52 134-186 3-57 (309)
40 KOG2177 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 74.8 1.8 44 132-179 11-54 (386)
41 KOG0311 Predicted E3 ubiquitin 97.6 5.7E-06 1.2E-10 81.9 -2.0 61 131-194 40-101 (381)
42 KOG4265 Predicted E3 ubiquitin 97.6 4.1E-05 9E-10 76.0 2.8 47 134-184 290-337 (349)
43 KOG1039 Predicted E3 ubiquitin 97.5 4.2E-05 9.1E-10 76.4 2.3 52 132-183 159-221 (344)
44 KOG4445 Uncharacterized conser 97.5 5.1E-05 1.1E-09 73.8 2.1 52 133-185 114-188 (368)
45 KOG1785 Tyrosine kinase negati 97.5 5.4E-05 1.2E-09 76.1 2.3 49 136-188 371-421 (563)
46 KOG1571 Predicted E3 ubiquitin 97.4 2E-05 4.4E-10 78.2 -1.7 45 132-183 303-347 (355)
47 KOG0825 PHD Zn-finger protein 97.3 4.2E-05 9.2E-10 82.0 -0.5 48 135-183 124-171 (1134)
48 KOG4159 Predicted E3 ubiquitin 97.2 0.00016 3.4E-09 73.7 2.5 51 130-184 80-130 (398)
49 PF14835 zf-RING_6: zf-RING of 97.2 0.00012 2.7E-09 56.1 1.0 47 135-186 8-54 (65)
50 KOG0978 E3 ubiquitin ligase in 97.1 0.00017 3.7E-09 77.5 1.2 49 133-185 642-691 (698)
51 KOG1645 RING-finger-containing 96.9 0.00045 9.7E-09 69.8 2.4 48 134-181 4-54 (463)
52 KOG0824 Predicted E3 ubiquitin 96.9 0.00041 8.9E-09 67.6 1.9 48 134-185 7-55 (324)
53 KOG0801 Predicted E3 ubiquitin 96.8 0.00038 8.2E-09 62.5 0.3 42 121-163 164-205 (205)
54 KOG4172 Predicted E3 ubiquitin 96.7 0.00047 1E-08 51.3 0.4 45 135-183 8-54 (62)
55 KOG0297 TNF receptor-associate 96.6 0.0014 3E-08 66.9 2.7 51 132-185 19-69 (391)
56 PF11789 zf-Nse: Zinc-finger o 96.4 0.0031 6.6E-08 47.3 3.3 42 133-177 10-53 (57)
57 KOG1941 Acetylcholine receptor 96.3 0.0017 3.7E-08 65.4 1.9 45 135-180 366-413 (518)
58 KOG3970 Predicted E3 ubiquitin 96.3 0.0025 5.3E-08 60.1 2.7 51 134-186 50-108 (299)
59 PF05883 Baculo_RING: Baculovi 96.3 0.0013 2.8E-08 57.5 0.5 38 134-172 26-69 (134)
60 COG5152 Uncharacterized conser 95.8 0.0034 7.3E-08 58.2 0.9 46 134-183 196-241 (259)
61 KOG1428 Inhibitor of type V ad 95.8 0.0057 1.2E-07 69.7 2.8 52 132-184 3484-3545(3738)
62 KOG2879 Predicted E3 ubiquitin 95.7 0.0081 1.8E-07 58.1 3.1 49 132-183 237-287 (298)
63 KOG1002 Nucleotide excision re 95.5 0.0052 1.1E-07 64.1 1.2 51 131-185 533-588 (791)
64 KOG2660 Locus-specific chromos 95.5 0.0032 7E-08 62.2 -0.3 49 131-182 12-60 (331)
65 KOG1952 Transcription factor N 95.5 0.0067 1.5E-07 66.2 2.0 51 132-182 189-246 (950)
66 PF10367 Vps39_2: Vacuolar sor 95.4 0.0064 1.4E-07 49.7 1.1 33 132-166 76-108 (109)
67 PF12906 RINGv: RING-variant d 95.2 0.012 2.6E-07 42.3 1.9 40 137-178 1-47 (47)
68 KOG1814 Predicted E3 ubiquitin 95.1 0.023 4.9E-07 57.9 4.0 46 134-180 184-237 (445)
69 KOG3039 Uncharacterized conser 95.0 0.019 4.1E-07 54.9 3.1 53 134-186 221-273 (303)
70 KOG1813 Predicted E3 ubiquitin 94.8 0.011 2.4E-07 57.8 1.1 46 134-183 241-286 (313)
71 PHA03096 p28-like protein; Pro 94.6 0.015 3.3E-07 57.0 1.5 46 135-180 179-231 (284)
72 PHA02862 5L protein; Provision 94.3 0.032 7E-07 49.4 2.7 44 135-183 3-53 (156)
73 KOG4739 Uncharacterized protei 94.3 0.017 3.8E-07 54.9 1.1 47 136-187 5-52 (233)
74 COG5222 Uncharacterized conser 94.3 0.023 5E-07 55.7 1.9 43 135-180 275-318 (427)
75 KOG0826 Predicted E3 ubiquitin 94.2 0.11 2.5E-06 51.5 6.5 47 133-182 299-345 (357)
76 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.062 1.3E-06 51.8 3.9 54 132-186 111-164 (260)
77 KOG0827 Predicted E3 ubiquitin 93.7 0.0024 5.1E-08 64.3 -6.3 53 135-188 197-250 (465)
78 KOG4692 Predicted E3 ubiquitin 93.6 0.058 1.3E-06 54.1 3.3 49 132-184 420-468 (489)
79 PF14570 zf-RING_4: RING/Ubox 93.4 0.072 1.6E-06 38.7 2.6 45 137-182 1-47 (48)
80 KOG2114 Vacuolar assembly/sort 93.1 0.046 1E-06 60.0 1.9 42 135-182 841-882 (933)
81 PHA02825 LAP/PHD finger-like p 93.0 0.085 1.9E-06 47.5 3.1 47 133-184 7-60 (162)
82 KOG3268 Predicted E3 ubiquitin 92.3 0.074 1.6E-06 48.8 1.7 28 156-183 190-228 (234)
83 PF08746 zf-RING-like: RING-li 92.2 0.09 1.9E-06 37.2 1.7 41 137-178 1-43 (43)
84 KOG4185 Predicted E3 ubiquitin 92.0 0.1 2.2E-06 50.6 2.5 47 135-182 4-54 (296)
85 PF10272 Tmpp129: Putative tra 90.7 0.34 7.4E-06 49.0 4.8 30 156-185 311-353 (358)
86 PF14447 Prok-RING_4: Prokaryo 90.4 0.15 3.2E-06 38.1 1.4 43 136-184 9-51 (55)
87 KOG1001 Helicase-like transcri 90.3 0.12 2.6E-06 56.3 1.2 47 135-186 455-503 (674)
88 KOG4275 Predicted E3 ubiquitin 90.2 0.063 1.4E-06 52.6 -0.9 42 134-183 300-342 (350)
89 COG5236 Uncharacterized conser 89.9 0.25 5.3E-06 49.6 2.9 47 132-182 59-107 (493)
90 PF07800 DUF1644: Protein of u 89.9 0.3 6.5E-06 44.0 3.1 35 134-170 2-47 (162)
91 KOG2932 E3 ubiquitin ligase in 89.9 0.15 3.2E-06 50.5 1.3 42 136-182 92-133 (389)
92 KOG1940 Zn-finger protein [Gen 87.4 0.33 7.2E-06 47.4 1.9 45 135-180 159-204 (276)
93 PF14446 Prok-RING_1: Prokaryo 86.8 0.81 1.8E-05 34.1 3.2 34 134-167 5-38 (54)
94 KOG2034 Vacuolar sorting prote 86.7 0.29 6.3E-06 54.2 1.2 36 132-169 815-850 (911)
95 KOG0298 DEAD box-containing he 86.3 0.2 4.4E-06 57.3 -0.2 47 132-181 1151-1197(1394)
96 PF01708 Gemini_mov: Geminivir 86.2 1.4 3E-05 36.2 4.5 37 35-71 27-63 (91)
97 PF03854 zf-P11: P-11 zinc fin 84.9 0.42 9E-06 34.8 0.9 43 136-184 4-47 (50)
98 KOG3161 Predicted E3 ubiquitin 84.6 0.29 6.2E-06 52.6 -0.1 43 135-180 12-54 (861)
99 COG5175 MOT2 Transcriptional r 83.9 0.76 1.6E-05 46.1 2.5 51 133-184 13-65 (480)
100 KOG0309 Conserved WD40 repeat- 83.6 0.6 1.3E-05 51.1 1.8 23 155-177 1047-1069(1081)
101 PF02439 Adeno_E3_CR2: Adenovi 83.2 2.9 6.2E-05 29.0 4.4 29 46-74 5-33 (38)
102 KOG1100 Predicted E3 ubiquitin 83.0 0.59 1.3E-05 43.8 1.3 39 137-183 161-200 (207)
103 KOG2817 Predicted E3 ubiquitin 82.1 1 2.2E-05 45.9 2.6 45 133-178 333-380 (394)
104 KOG3002 Zn finger protein [Gen 81.9 0.9 1.9E-05 45.0 2.2 45 133-183 47-91 (299)
105 COG5183 SSM4 Protein involved 80.0 1.2 2.7E-05 49.1 2.6 53 132-184 10-67 (1175)
106 KOG0825 PHD Zn-finger protein 78.9 1 2.2E-05 49.5 1.6 52 133-184 95-155 (1134)
107 KOG0802 E3 ubiquitin ligase [P 78.5 1.1 2.5E-05 47.6 1.8 46 133-186 478-523 (543)
108 KOG3800 Predicted E3 ubiquitin 78.5 1.6 3.6E-05 42.8 2.7 50 136-186 2-54 (300)
109 PF01102 Glycophorin_A: Glycop 78.3 2.8 6E-05 36.3 3.8 14 46-59 67-80 (122)
110 COG5220 TFB3 Cdk activating ki 77.7 0.85 1.8E-05 43.8 0.5 49 133-181 9-62 (314)
111 KOG1609 Protein involved in mR 76.4 1.1 2.4E-05 43.3 0.9 51 134-185 78-136 (323)
112 KOG0269 WD40 repeat-containing 76.3 2.5 5.5E-05 46.4 3.6 41 135-177 780-820 (839)
113 KOG4367 Predicted Zn-finger pr 75.6 2.5 5.4E-05 43.8 3.2 35 133-171 3-37 (699)
114 KOG1829 Uncharacterized conser 74.4 3 6.4E-05 44.9 3.5 44 133-180 510-558 (580)
115 PF01102 Glycophorin_A: Glycop 73.5 5.3 0.00011 34.6 4.2 31 47-77 65-95 (122)
116 KOG1812 Predicted E3 ubiquitin 72.3 1.6 3.4E-05 44.7 0.8 38 133-171 145-183 (384)
117 KOG3053 Uncharacterized conser 72.3 1.6 3.4E-05 42.3 0.8 50 133-183 19-82 (293)
118 KOG3113 Uncharacterized conser 70.9 6.5 0.00014 38.1 4.6 52 134-187 111-162 (293)
119 KOG3899 Uncharacterized conser 70.0 2.3 5E-05 42.0 1.4 31 156-186 325-368 (381)
120 KOG4718 Non-SMC (structural ma 70.0 2.3 5E-05 40.2 1.3 43 135-180 182-224 (235)
121 PF15102 TMEM154: TMEM154 prot 67.3 1.5 3.3E-05 39.0 -0.4 10 162-171 127-136 (146)
122 PF07975 C1_4: TFIIH C1-like d 67.2 4.1 9E-05 30.0 1.9 43 137-179 2-50 (51)
123 smart00132 LIM Zinc-binding do 66.9 5.3 0.00011 25.9 2.3 37 136-182 1-37 (39)
124 PF05290 Baculo_IE-1: Baculovi 66.9 4.8 0.0001 35.4 2.5 53 133-185 79-134 (140)
125 TIGR00622 ssl1 transcription f 66.6 7.6 0.00016 33.2 3.6 46 134-179 55-110 (112)
126 PF02009 Rifin_STEVOR: Rifin/s 66.2 7.2 0.00016 38.7 4.0 27 47-73 259-285 (299)
127 PF04639 Baculo_E56: Baculovir 66.0 3.3 7.1E-05 40.7 1.5 35 38-72 269-303 (305)
128 KOG2066 Vacuolar assembly/sort 65.8 2.3 5E-05 46.9 0.5 43 135-179 785-831 (846)
129 KOG4362 Transcriptional regula 64.0 1.9 4E-05 47.1 -0.6 46 134-183 21-69 (684)
130 KOG3842 Adaptor protein Pellin 62.2 7.4 0.00016 38.9 3.2 50 134-184 341-415 (429)
131 PF13901 DUF4206: Domain of un 62.2 5.9 0.00013 36.8 2.5 42 133-180 151-197 (202)
132 smart00249 PHD PHD zinc finger 60.7 6.5 0.00014 26.3 1.9 31 136-167 1-31 (47)
133 PF06667 PspB: Phage shock pro 58.1 48 0.001 26.3 6.5 8 66-73 23-30 (75)
134 PF00628 PHD: PHD-finger; Int 57.3 6.8 0.00015 27.7 1.5 43 136-179 1-49 (51)
135 KOG2807 RNA polymerase II tran 56.8 8.3 0.00018 38.7 2.5 47 133-180 329-375 (378)
136 PF10571 UPF0547: Uncharacteri 54.8 8 0.00017 24.5 1.3 23 136-160 2-24 (26)
137 COG5109 Uncharacterized conser 53.7 8.8 0.00019 38.4 2.1 43 135-178 337-382 (396)
138 KOG2041 WD40 repeat protein [G 53.6 8.8 0.00019 42.4 2.2 45 134-182 1131-1184(1189)
139 TIGR02976 phageshock_pspB phag 50.5 70 0.0015 25.4 6.4 9 63-71 19-27 (75)
140 PHA02650 hypothetical protein; 50.1 46 0.001 26.7 5.2 13 58-70 61-73 (81)
141 PF00412 LIM: LIM domain; Int 49.5 12 0.00027 26.7 1.9 39 137-185 1-39 (58)
142 PF02891 zf-MIZ: MIZ/SP-RING z 49.4 19 0.00041 26.1 2.8 42 136-181 4-50 (50)
143 PF15330 SIT: SHP2-interacting 48.7 24 0.00051 29.8 3.7 27 49-75 3-29 (107)
144 PF06679 DUF1180: Protein of u 48.5 67 0.0015 29.2 6.8 27 47-73 94-120 (163)
145 TIGR01477 RIFIN variant surfac 48.3 20 0.00044 36.4 3.7 19 54-72 320-338 (353)
146 KOG1815 Predicted E3 ubiquitin 47.6 16 0.00035 38.0 3.0 37 132-171 68-104 (444)
147 KOG2068 MOT2 transcription fac 47.1 25 0.00055 35.3 4.2 50 134-184 249-299 (327)
148 PF10717 ODV-E18: Occlusion-de 47.0 40 0.00087 27.4 4.5 21 38-58 18-38 (85)
149 PTZ00046 rifin; Provisional 46.8 21 0.00044 36.4 3.5 22 51-72 322-343 (358)
150 PF04710 Pellino: Pellino; In 46.8 6.5 0.00014 40.4 0.0 49 134-183 328-401 (416)
151 PF13719 zinc_ribbon_5: zinc-r 46.4 11 0.00025 25.5 1.2 26 136-161 4-36 (37)
152 KOG3005 GIY-YIG type nuclease 45.6 11 0.00023 36.9 1.3 48 135-182 183-242 (276)
153 KOG3039 Uncharacterized conser 45.0 13 0.00028 36.1 1.7 36 132-171 41-76 (303)
154 PF11057 Cortexin: Cortexin of 44.5 40 0.00087 26.9 4.1 10 65-74 47-56 (81)
155 PF05399 EVI2A: Ectropic viral 43.0 26 0.00057 33.2 3.4 23 43-65 127-149 (227)
156 PF07010 Endomucin: Endomucin; 42.6 48 0.001 31.8 5.0 19 59-77 200-218 (259)
157 PF01363 FYVE: FYVE zinc finge 42.5 14 0.0003 27.9 1.2 37 133-169 8-44 (69)
158 PF04639 Baculo_E56: Baculovir 40.4 10 0.00022 37.4 0.3 35 32-66 267-301 (305)
159 TIGR01478 STEVOR variant surfa 40.4 34 0.00073 33.9 3.8 10 65-74 278-287 (295)
160 PF15176 LRR19-TM: Leucine-ric 40.1 55 0.0012 27.5 4.5 31 43-73 14-44 (102)
161 PF06906 DUF1272: Protein of u 40.0 41 0.00088 25.4 3.3 44 136-184 7-53 (57)
162 PF05393 Hum_adeno_E3A: Human 39.0 40 0.00087 27.7 3.4 10 66-75 51-60 (94)
163 KOG3457 Sec61 protein transloc 38.7 36 0.00077 27.8 3.1 33 38-72 54-86 (88)
164 PTZ00370 STEVOR; Provisional 38.6 37 0.00079 33.7 3.8 10 65-74 274-283 (296)
165 PF07172 GRP: Glycine rich pro 37.7 30 0.00065 28.6 2.6 17 44-60 4-20 (95)
166 PF10577 UPF0560: Uncharacteri 37.7 66 0.0014 36.1 5.9 33 41-73 266-300 (807)
167 PF13717 zinc_ribbon_4: zinc-r 36.2 18 0.0004 24.4 0.9 26 136-161 4-36 (36)
168 PF05568 ASFV_J13L: African sw 35.6 47 0.001 29.9 3.6 10 42-51 27-36 (189)
169 KOG1812 Predicted E3 ubiquitin 35.4 19 0.00042 36.8 1.4 44 134-178 306-351 (384)
170 PRK09458 pspB phage shock prot 34.9 1.2E+02 0.0026 24.1 5.5 16 57-72 13-28 (75)
171 PF14979 TMEM52: Transmembrane 34.6 1.1E+02 0.0024 27.5 5.7 36 40-75 14-50 (154)
172 PF15179 Myc_target_1: Myc tar 34.1 74 0.0016 29.6 4.7 36 40-75 16-51 (197)
173 PF12669 P12: Virus attachment 33.7 39 0.00085 25.3 2.5 6 67-72 18-23 (58)
174 cd00065 FYVE FYVE domain; Zinc 33.7 35 0.00075 24.5 2.1 35 135-169 3-37 (57)
175 KOG3579 Predicted E3 ubiquitin 32.7 23 0.0005 35.1 1.3 41 132-172 266-306 (352)
176 PF07649 C1_3: C1-like domain; 32.4 35 0.00075 21.8 1.8 29 136-165 2-30 (30)
177 PF06305 DUF1049: Protein of u 32.3 70 0.0015 23.8 3.7 31 43-73 18-48 (68)
178 PF12877 DUF3827: Domain of un 32.1 37 0.0008 37.1 2.8 13 11-23 241-253 (684)
179 PHA03240 envelope glycoprotein 32.1 49 0.0011 31.6 3.3 32 43-74 211-242 (258)
180 PF08114 PMP1_2: ATPase proteo 31.6 39 0.00085 23.9 1.9 11 63-73 27-37 (43)
181 PF15050 SCIMP: SCIMP protein 31.3 95 0.0021 27.0 4.6 21 57-77 17-37 (133)
182 PF05454 DAG1: Dystroglycan (D 31.1 16 0.00035 36.1 0.0 9 115-123 185-194 (290)
183 PHA02849 putative transmembran 31.1 1.3E+02 0.0027 24.3 5.0 28 39-66 11-38 (82)
184 smart00064 FYVE Protein presen 30.4 47 0.001 24.8 2.5 36 134-169 10-45 (68)
185 PF13314 DUF4083: Domain of un 30.2 1.2E+02 0.0025 23.1 4.4 13 45-57 6-18 (58)
186 COG3763 Uncharacterized protei 29.6 1.2E+02 0.0027 23.9 4.6 29 45-73 4-32 (71)
187 PF15065 NCU-G1: Lysosomal tra 29.4 36 0.00077 34.6 2.1 36 39-74 312-347 (350)
188 KOG1245 Chromatin remodeling c 29.2 19 0.00041 42.8 0.2 50 132-182 1106-1159(1404)
189 PF07406 NICE-3: NICE-3 protei 29.0 2.5E+02 0.0054 26.0 7.4 17 161-177 125-143 (186)
190 PRK01844 hypothetical protein; 28.3 1.3E+02 0.0029 23.8 4.6 24 48-71 7-30 (72)
191 COG2268 Uncharacterized protei 28.0 37 0.0008 36.5 2.0 33 41-73 6-38 (548)
192 PF11346 DUF3149: Protein of u 27.9 1.1E+02 0.0025 21.6 3.8 21 53-73 16-36 (42)
193 PF01708 Gemini_mov: Geminivir 27.9 1.2E+02 0.0027 25.0 4.5 14 57-70 53-66 (91)
194 PF08374 Protocadherin: Protoc 26.7 58 0.0013 31.0 2.9 12 60-71 53-64 (221)
195 PF13832 zf-HC5HC2H_2: PHD-zin 26.7 58 0.0013 26.7 2.6 33 133-167 54-87 (110)
196 COG4741 Predicted secreted end 26.3 71 0.0015 29.0 3.2 28 46-73 3-30 (175)
197 PF04423 Rad50_zn_hook: Rad50 26.3 24 0.00052 25.6 0.2 11 174-184 22-32 (54)
198 KOG4185 Predicted E3 ubiquitin 25.9 11 0.00025 36.4 -2.1 48 135-182 208-266 (296)
199 PHA03281 envelope glycoprotein 25.6 1.6E+02 0.0035 31.8 6.1 34 41-74 554-587 (642)
200 COG5627 MMS21 DNA repair prote 24.8 41 0.00088 32.5 1.5 37 135-174 190-226 (275)
201 PF08113 CoxIIa: Cytochrome c 24.3 1.9E+02 0.0041 19.6 4.1 22 46-67 8-29 (34)
202 KOG3653 Transforming growth fa 24.3 1.9E+02 0.0042 30.8 6.4 13 161-173 291-303 (534)
203 PF07191 zinc-ribbons_6: zinc- 24.1 9.8 0.00021 29.9 -2.3 40 135-183 2-41 (70)
204 KOG2979 Protein involved in DN 24.1 45 0.00098 32.5 1.7 40 135-177 177-218 (262)
205 PF07219 HemY_N: HemY protein 24.1 1.1E+02 0.0024 25.2 3.9 31 43-73 13-43 (108)
206 PLN02189 cellulose synthase 24.1 88 0.0019 36.2 4.1 49 135-183 35-87 (1040)
207 PF06750 DiS_P_DiS: Bacterial 24.1 75 0.0016 25.9 2.7 38 134-184 33-70 (92)
208 KOG2113 Predicted RNA binding 24.0 64 0.0014 32.5 2.7 44 133-182 342-386 (394)
209 PHA03291 envelope glycoprotein 23.9 2.2E+02 0.0047 29.2 6.4 16 63-78 307-322 (401)
210 PF05283 MGC-24: Multi-glycosy 23.8 1.2E+02 0.0026 28.2 4.3 21 38-58 156-176 (186)
211 KOG4577 Transcription factor L 23.7 22 0.00048 35.2 -0.5 42 135-186 93-134 (383)
212 KOG0824 Predicted E3 ubiquitin 23.3 42 0.00091 33.5 1.3 47 133-182 104-150 (324)
213 PF02038 ATP1G1_PLM_MAT8: ATP1 23.2 54 0.0012 24.1 1.5 21 48-68 16-36 (50)
214 PF02060 ISK_Channel: Slow vol 22.9 1.8E+02 0.0038 25.5 4.9 31 44-74 43-73 (129)
215 PF14584 DUF4446: Protein of u 22.7 65 0.0014 28.8 2.3 38 115-153 78-115 (151)
216 PRK14710 hypothetical protein; 22.6 57 0.0012 25.8 1.6 21 40-60 6-26 (86)
217 smart00647 IBR In Between Ring 22.5 30 0.00065 25.1 0.1 20 149-168 39-58 (64)
218 PF04277 OAD_gamma: Oxaloaceta 22.5 1.8E+02 0.004 22.3 4.6 25 49-73 8-32 (79)
219 PF11980 DUF3481: Domain of un 22.4 1.2E+02 0.0027 24.7 3.6 38 38-75 8-45 (87)
220 PF04216 FdhE: Protein involve 22.4 15 0.00032 35.9 -2.1 47 133-180 171-219 (290)
221 PF07406 NICE-3: NICE-3 protei 22.3 90 0.0019 28.9 3.2 34 41-74 7-43 (186)
222 PF09538 FYDLN_acid: Protein o 22.0 68 0.0015 27.1 2.1 31 133-163 8-39 (108)
223 PF14169 YdjO: Cold-inducible 21.8 47 0.001 25.3 1.0 13 172-184 39-51 (59)
224 PF02009 Rifin_STEVOR: Rifin/s 21.8 94 0.002 30.9 3.4 15 49-63 258-272 (299)
225 PRK13415 flagella biosynthesis 21.6 2.7E+02 0.0057 26.6 6.2 27 49-75 68-94 (219)
226 PRK11088 rrmA 23S rRNA methylt 21.5 61 0.0013 30.9 2.0 26 135-161 3-28 (272)
227 PF15106 TMEM156: TMEM156 prot 21.4 1.2E+02 0.0026 28.8 3.8 20 45-64 176-195 (226)
228 PF15102 TMEM154: TMEM154 prot 21.3 40 0.00086 30.2 0.6 11 65-75 77-87 (146)
229 KOG4323 Polycomb-like PHD Zn-f 21.1 47 0.001 35.0 1.2 49 134-182 168-225 (464)
230 KOG1356 Putative transcription 20.8 36 0.00077 38.3 0.3 45 135-181 230-280 (889)
231 PF06365 CD34_antigen: CD34/Po 20.6 1.2E+02 0.0025 28.6 3.6 9 46-54 101-109 (202)
232 PF11023 DUF2614: Protein of u 20.5 74 0.0016 27.3 2.0 28 152-185 71-98 (114)
233 smart00531 TFIIE Transcription 20.4 83 0.0018 27.6 2.5 14 173-186 124-137 (147)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.6e-17 Score=163.61 Aligned_cols=74 Identities=41% Similarity=0.871 Sum_probs=64.7
Q ss_pred CCCHHHHhhCCceeeeeccCCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCC-CCcccccccCC
Q 039247 111 GLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNST-CPLCRDTLFTP 185 (365)
Q Consensus 111 gl~~~~i~~LP~~~y~~~~~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~s-CPlCR~~l~~~ 185 (365)
.+.+..+.++|...|.+..+......|+||+|+|+++|++|+|| |+|.||..||++||.++.+ ||+|++++...
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 35678899999999998765555579999999999999999999 9999999999999998855 99999977543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.42 E-value=3.9e-14 Score=100.03 Aligned_cols=43 Identities=49% Similarity=1.256 Sum_probs=40.4
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
+|+||+++|.+++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.32 E-value=1.9e-12 Score=122.55 Aligned_cols=75 Identities=27% Similarity=0.701 Sum_probs=59.3
Q ss_pred CCCCCHHHHhhCCceeee--eccCCCCCCcCccccCcccCCC----ceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 109 DSGLDQAFIDALPVFQYK--EIVGLKEPFDCAVCLCEFSEKD----KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 109 ~~gl~~~~i~~LP~~~y~--~~~~~~~~~~CaICl~~f~~~~----~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
..+..+.+++.+|.+... ...+.....+|+||++.+...+ .+.+++.|+|.||..||..|+..+.+||+||.++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 466789999999998643 3333445679999999987643 1345555999999999999999999999999987
Q ss_pred c
Q 039247 183 F 183 (365)
Q Consensus 183 ~ 183 (365)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.17 E-value=1.6e-11 Score=96.37 Aligned_cols=45 Identities=42% Similarity=0.997 Sum_probs=35.5
Q ss_pred CCcCccccCcccCC----------CceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 134 PFDCAVCLCEFSEK----------DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 134 ~~~CaICl~~f~~~----------~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
+..|+||++.|.+. -.+...+ |+|.||..||..||..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999422 2334445 999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.8e-11 Score=116.63 Aligned_cols=51 Identities=43% Similarity=1.214 Sum_probs=46.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~ 184 (365)
..-+|+|||+.|-.+|++++|| |.|.||..||+.|+.. ...||+||.+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999999999999999 9999999999999995 4579999999864
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.2e-11 Score=116.36 Aligned_cols=68 Identities=26% Similarity=0.728 Sum_probs=50.9
Q ss_pred HHHHhhCCceeeeeccCCCCCCcCccccCc-ccCC---------CceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 114 QAFIDALPVFQYKEIVGLKEPFDCAVCLCE-FSEK---------DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 114 ~~~i~~LP~~~y~~~~~~~~~~~CaICl~~-f~~~---------~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
++.-+.+|+..-.+. ..++..|.||+++ |+++ .+...|| |||+||.+|+..|++++++||.||.++.
T Consensus 269 kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 269 KDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 344444554443332 3456789999999 5554 2456788 9999999999999999999999999964
Q ss_pred C
Q 039247 184 T 184 (365)
Q Consensus 184 ~ 184 (365)
-
T Consensus 346 f 346 (491)
T COG5243 346 F 346 (491)
T ss_pred c
Confidence 3
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.84 E-value=2.4e-09 Score=73.53 Aligned_cols=44 Identities=52% Similarity=1.272 Sum_probs=36.6
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l 182 (365)
+|+||++.+ .+.+.+.+ |+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33455555 9999999999999997 77899999764
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.83 E-value=2.3e-09 Score=86.32 Aligned_cols=52 Identities=33% Similarity=0.757 Sum_probs=39.9
Q ss_pred CCCCcCccccCcccC--------CC-ceeecCCCCCccchhhHHHHHhc---CCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSE--------KD-KLRLLPMCSHAFHINCIDTWLLS---NSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~--------~~-~v~~lp~C~H~FH~~CI~~Wl~~---~~sCPlCR~~l~ 183 (365)
.++..|.||+..|.. ++ -..++..|+|.||..||.+||.. +..||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 346789999999872 22 23344569999999999999986 357999999764
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.82 E-value=2.1e-09 Score=77.92 Aligned_cols=46 Identities=30% Similarity=0.813 Sum_probs=39.4
Q ss_pred CCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+..|.||++.... +.++| |||. |+..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999665 77888 9999 999999999999999999999874
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=3.2e-09 Score=97.50 Aligned_cols=51 Identities=27% Similarity=0.757 Sum_probs=41.3
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc----------------CCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS----------------NSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~----------------~~sCPlCR~~l~~~ 185 (365)
..+..+|+||++.+.+ ..+++ |||+||..||..|+.. ...||+||..+...
T Consensus 15 ~~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 3466899999999865 55677 9999999999999852 24799999988543
No 11
>PHA02926 zinc finger-like protein; Provisional
Probab=98.75 E-value=3.4e-09 Score=98.76 Aligned_cols=54 Identities=28% Similarity=0.744 Sum_probs=41.5
Q ss_pred CCCCCCcCccccCcccC-----CCceeecCCCCCccchhhHHHHHhcC------CCCCccccccc
Q 039247 130 GLKEPFDCAVCLCEFSE-----KDKLRLLPMCSHAFHINCIDTWLLSN------STCPLCRDTLF 183 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~-----~~~v~~lp~C~H~FH~~CI~~Wl~~~------~sCPlCR~~l~ 183 (365)
....+.+|+||++..-. +....+|+.|+|.||..||..|...+ .+||+||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34556789999998643 22345677799999999999999753 35999999764
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.71 E-value=7e-09 Score=71.44 Aligned_cols=39 Identities=38% Similarity=1.080 Sum_probs=32.9
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlC 178 (365)
|+||++.+.+ .+..++ |||.|+.+||..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 346677 99999999999999998899998
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.4e-09 Score=97.32 Aligned_cols=51 Identities=27% Similarity=0.689 Sum_probs=41.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC---CCCcccccccCCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS---TCPLCRDTLFTPG 186 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---sCPlCR~~l~~~~ 186 (365)
...++|.|||+.-++ .+++. |||+||..||.+||+.+. .||+|++.+....
T Consensus 45 ~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 456899999998444 55666 999999999999998654 5999999885543
No 14
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.1e-09 Score=98.95 Aligned_cols=48 Identities=33% Similarity=0.803 Sum_probs=42.3
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
...|.+||+..+. .-.+| |||+||..||..|+.....||+||..+...
T Consensus 239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3679999999766 66788 999999999999999999999999987544
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.4e-09 Score=108.96 Aligned_cols=51 Identities=35% Similarity=0.887 Sum_probs=44.6
Q ss_pred CCCcCccccCcccCCCc--eeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDK--LRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~--v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....|+||++++..... ...++ |+|+||..|+..|+++.++||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 35689999999998655 67888 99999999999999999999999995543
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=5.2e-08 Score=68.94 Aligned_cols=44 Identities=32% Similarity=0.861 Sum_probs=38.1
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
.|.||++.|.+....++++ |||+|+..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666778887 9999999999999866678999984
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.6e-08 Score=89.03 Aligned_cols=52 Identities=31% Similarity=0.740 Sum_probs=42.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
...+-|+|||+.+... +.+-.+|||+||..||...+.....||+||..|...
T Consensus 129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3457799999998873 434345999999999999999999999999866543
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.53 E-value=6.9e-08 Score=63.89 Aligned_cols=38 Identities=47% Similarity=1.211 Sum_probs=32.4
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlC 178 (365)
|+||++.. ..+..++ |+|.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 3477788 999999999999998 56679988
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.51 E-value=9.6e-08 Score=71.54 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=40.2
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+||++.+.+ ..+++ |||+|+..||..|+..+.+||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999999887 45677 99999999999999998999999988743
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.48 E-value=9.5e-08 Score=67.24 Aligned_cols=38 Identities=34% Similarity=0.892 Sum_probs=29.9
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHhcC----CCCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN----STCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~----~sCPlC 178 (365)
|+||++.|.+ ...|+ |||.|+..||..|.... ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998 77888 99999999999999754 369988
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.45 E-value=1.1e-07 Score=65.64 Aligned_cols=39 Identities=44% Similarity=1.197 Sum_probs=33.0
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHh--cCCCCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL--SNSTCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~--~~~sCPlC 178 (365)
|+||++.+... +.+++ |+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998773 34677 999999999999999 45579998
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1.4e-07 Score=95.55 Aligned_cols=52 Identities=33% Similarity=0.623 Sum_probs=44.0
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 130 GLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
.+.....|+||++.|.. ..+++ |+|.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 34566799999999876 44677 999999999999999888999999987644
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.35 E-value=2.7e-07 Score=73.12 Aligned_cols=48 Identities=35% Similarity=0.763 Sum_probs=34.6
Q ss_pred CccccCcccCCCce-eecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 137 CAVCLCEFSEKDKL-RLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 137 CaICl~~f~~~~~v-~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
|+-|...+.++++. ...-.|+|.||..||.+||..+..||+||++...
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 33343333344432 3334599999999999999999999999998743
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.5e-07 Score=74.04 Aligned_cols=51 Identities=35% Similarity=0.778 Sum_probs=38.0
Q ss_pred CCCcCccccCcccC---------CCceeecCCCCCccchhhHHHHHhcC---CCCCccccccc
Q 039247 133 EPFDCAVCLCEFSE---------KDKLRLLPMCSHAFHINCIDTWLLSN---STCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~---------~~~v~~lp~C~H~FH~~CI~~Wl~~~---~sCPlCR~~l~ 183 (365)
....|-||...|.. +|-..++-.|.|.||..||.+|+... ..||+||++..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34489999988862 22233444699999999999999754 45999999764
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-07 Score=92.80 Aligned_cols=51 Identities=31% Similarity=0.826 Sum_probs=39.4
Q ss_pred CCCcCccccCcccCCC--------------ceeecCCCCCccchhhHHHHHhc-CCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKD--------------KLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~--------------~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~ 184 (365)
...+|+||+..+.--. ...++| |.|+||..|+..|+.. +--||+||.+|+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4568999999875210 123457 9999999999999994 4589999999863
No 26
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.19 E-value=2.7e-07 Score=99.81 Aligned_cols=70 Identities=27% Similarity=0.642 Sum_probs=48.4
Q ss_pred HHHHhhCCceeeeeccCCCCCCcCccccCcccCCC-c--eeecCCCCCccchhhHHHHHhc--CCCCCccccccc
Q 039247 114 QAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKD-K--LRLLPMCSHAFHINCIDTWLLS--NSTCPLCRDTLF 183 (365)
Q Consensus 114 ~~~i~~LP~~~y~~~~~~~~~~~CaICl~~f~~~~-~--v~~lp~C~H~FH~~CI~~Wl~~--~~sCPlCR~~l~ 183 (365)
-++.+.|-.++.+-.....+..+||||+..+..-| . -...++|.|.||..|+.+|+.+ +.+||+||.++.
T Consensus 1449 gs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1449 GSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34455554444433334456779999998877322 1 2334569999999999999986 457999998764
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.8e-07 Score=87.14 Aligned_cols=52 Identities=31% Similarity=0.662 Sum_probs=42.8
Q ss_pred CCCCcCccccCcccCCC-------ceeecCCCCCccchhhHHHHHh--cCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKD-------KLRLLPMCSHAFHINCIDTWLL--SNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~-------~v~~lp~C~H~FH~~CI~~Wl~--~~~sCPlCR~~l~~ 184 (365)
.++..|+||-..+.... +...|. |+|+||..||..|.. +.++||.|+..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45678999999887654 566787 999999999999986 67899999887643
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.6e-06 Score=82.80 Aligned_cols=48 Identities=31% Similarity=0.832 Sum_probs=40.4
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHH-HHhcCCC-CCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT-WLLSNST-CPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~-Wl~~~~s-CPlCR~~l~~~ 185 (365)
++.|+||++.... .-.++ |||+||..||.. |-.++.- ||+||+-....
T Consensus 215 d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 5789999999666 66777 999999999999 9877765 99999977544
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.05 E-value=9e-07 Score=86.95 Aligned_cols=51 Identities=29% Similarity=0.679 Sum_probs=44.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..-..|-||.+.|.. ..++| |+|.||.-||...|..+..||+|+.++.+..
T Consensus 21 D~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 344579999999988 67788 9999999999999999999999999875543
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.00 E-value=4.3e-06 Score=60.80 Aligned_cols=42 Identities=24% Similarity=0.775 Sum_probs=32.6
Q ss_pred cCccccCcccCCCceeecCCCC-----CccchhhHHHHHhcC--CCCCccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCS-----HAFHINCIDTWLLSN--STCPLCR 179 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~-----H~FH~~CI~~Wl~~~--~sCPlCR 179 (365)
.|-||++ +..++...+.| |. |.+|..|+..|+... .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 33444555778 85 899999999999754 4799995
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=2.8e-06 Score=86.18 Aligned_cols=50 Identities=34% Similarity=0.804 Sum_probs=40.2
Q ss_pred CCCCCcCccccCcccCCC-ceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 131 LKEPFDCAVCLCEFSEKD-KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~-~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..+..+|+|||+.+.+.- .++... |.|.||..|+..| ...+||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 456678999999998754 344445 9999999999999 6678999998554
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.97 E-value=2.8e-06 Score=82.11 Aligned_cols=51 Identities=31% Similarity=0.694 Sum_probs=42.7
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 130 GLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
++..-..|-||-+.|.. ..+++ |||.||.-||...|..+..||+||.+...
T Consensus 21 ~LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34445679999999877 55666 99999999999999999999999997643
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.96 E-value=4e-06 Score=65.58 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=37.9
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~ 185 (365)
.+.|+||.+.|.+ ..+++ |||.|...||..|+.. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 4689999999988 77788 9999999999999998 78999999887653
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.3e-06 Score=86.11 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=39.1
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-----CCCCcccccccCCCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-----STCPLCRDTLFTPGF 187 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-----~sCPlCR~~l~~~~~ 187 (365)
...|+|||+.... ...+. |||+||..||..++... ..||+||..|...+.
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 5689999998655 33444 99999999999988643 469999998876543
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.9e-06 Score=69.64 Aligned_cols=50 Identities=30% Similarity=0.714 Sum_probs=36.9
Q ss_pred CCcCccccCccc-------------CCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFS-------------EKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~-------------~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
-+.|+||..-+- .++-....-.|+|.||..||.+||+.++.||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 457888765432 12223334469999999999999999999999988653
No 36
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.89 E-value=8.2e-06 Score=57.84 Aligned_cols=38 Identities=32% Similarity=0.826 Sum_probs=22.6
Q ss_pred CccccCcccC-CCceeecCCCCCccchhhHHHHHhcC----CCCC
Q 039247 137 CAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLSN----STCP 176 (365)
Q Consensus 137 CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~~----~sCP 176 (365)
|+||++ |.. +....+|+ |||+|+.+||..++..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 755 44567888 99999999999999854 2476
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.88 E-value=3.3e-06 Score=65.82 Aligned_cols=49 Identities=27% Similarity=0.807 Sum_probs=23.9
Q ss_pred CcCccccCcccCCC-c-eeec--CCCCCccchhhHHHHHhc----C----C---CCCccccccc
Q 039247 135 FDCAVCLCEFSEKD-K-LRLL--PMCSHAFHINCIDTWLLS----N----S---TCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~-~-v~~l--p~C~H~FH~~CI~~Wl~~----~----~---sCPlCR~~l~ 183 (365)
.+|.||++.+..++ . ..+. +.|++.||..||..||+. + . .||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999999876332 2 2233 269999999999999973 1 1 3999999874
No 38
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.9e-06 Score=83.82 Aligned_cols=45 Identities=29% Similarity=0.863 Sum_probs=34.6
Q ss_pred CcCccccCcccC-CCceeecCCCCCccchhhHHHHHhc---CCCCCcccc
Q 039247 135 FDCAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLS---NSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~---~~sCPlCR~ 180 (365)
..|.|| .+|.+ ...+.-...|||+||..|+..|+.. +.+||.|+-
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 479999 55555 3445445569999999999999985 357999993
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=1.5e-05 Score=78.32 Aligned_cols=52 Identities=23% Similarity=0.515 Sum_probs=38.1
Q ss_pred CCcCccccCc--ccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccCCC
Q 039247 134 PFDCAVCLCE--FSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTPG 186 (365)
Q Consensus 134 ~~~CaICl~~--f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~~ 186 (365)
+..|++|... +.+.-++.+.+ |||.||..||+..+.. ...||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 3579999995 33333344445 9999999999996654 457999999886544
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1e-05 Score=74.84 Aligned_cols=44 Identities=39% Similarity=0.898 Sum_probs=38.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
.+...|+||++.|... .+++ |+|.||..||..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4567899999999985 7788 999999999999988555799999
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.7e-06 Score=81.85 Aligned_cols=61 Identities=30% Similarity=0.553 Sum_probs=47.4
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccCCCCCCCCCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTPGFSIENPMF 194 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~~~~~~~~~~ 194 (365)
...+..|+|||+-+.. .+.++.|.|.||.+||..-++. +..||.||..+...-....+|.+
T Consensus 40 ~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~f 101 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNF 101 (381)
T ss_pred hhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccH
Confidence 3456789999999877 5566679999999999999985 66899999998765444444444
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.1e-05 Score=75.98 Aligned_cols=47 Identities=28% Similarity=0.769 Sum_probs=40.4
Q ss_pred CCcCccccCcccCCCceeecCCCCC-ccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSH-AFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H-~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..+|.||+.+-.+ ..+|| |.| -.|..|.+...-+++.||+||+++..
T Consensus 290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4689999999776 78999 999 47899999977788999999998854
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4.2e-05 Score=76.43 Aligned_cols=52 Identities=33% Similarity=0.894 Sum_probs=40.3
Q ss_pred CCCCcCccccCcccCCC----ceeecCCCCCccchhhHHHHHh--c-----CCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKD----KLRLLPMCSHAFHINCIDTWLL--S-----NSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~----~v~~lp~C~H~FH~~CI~~Wl~--~-----~~sCPlCR~~l~ 183 (365)
..+..|.||++..-... ...++|+|.|.||..||..|-. + ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34568999999876532 2356788999999999999984 3 367999998763
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.48 E-value=5.1e-05 Score=73.82 Aligned_cols=52 Identities=25% Similarity=0.756 Sum_probs=43.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-----------------------CCCCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-----------------------NSTCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----------------------~~sCPlCR~~l~~~ 185 (365)
...+|.|||.-|...+...+++ |-|.||..|+.++|.. ...||+||-.|...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3468999999999999999998 9999999999887721 23599999988543
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.48 E-value=5.4e-05 Score=76.07 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=40.7
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhc--CCCCCcccccccCCCCC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS--NSTCPLCRDTLFTPGFS 188 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~--~~sCPlCR~~l~~~~~~ 188 (365)
.|-||-+. ++.|++-| |||..|..|+..|-.+ .++||.||.+|......
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 59999887 45588999 9999999999999754 57899999999665443
No 46
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2e-05 Score=78.22 Aligned_cols=45 Identities=31% Similarity=0.647 Sum_probs=34.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..+..|.||+++..+ ...+| |||+-| |+..- +....||+||+.+-
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 345689999999777 77888 999866 77664 33445999999773
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.32 E-value=4.2e-05 Score=81.98 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=40.0
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..|++|+..|.+....-..+ |+|.||..||+.|-+...+||+||..+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 46888888887765554555 9999999999999999999999998763
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00016 Score=73.69 Aligned_cols=51 Identities=35% Similarity=0.878 Sum_probs=44.0
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 130 GLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....+++|.||+..+.+ ...+| |||.||..||++-+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 34667899999998887 66778 99999999999988777789999999864
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.21 E-value=0.00012 Score=56.05 Aligned_cols=47 Identities=28% Similarity=0.674 Sum_probs=23.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..|++|.+-+.. ...+..|.|+|+..||..-+.. -||+|+.+.-..+
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHH
Confidence 479999999877 4444569999999999875443 4999998765444
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00017 Score=77.52 Aligned_cols=49 Identities=24% Similarity=0.633 Sum_probs=38.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~~~ 185 (365)
+-..|++|-..+.+ +.++ +|+|+||..||..-+. ++..||.|..++-..
T Consensus 642 ~~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34579999977665 4444 4999999999999987 566899998877443
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00045 Score=69.78 Aligned_cols=48 Identities=29% Similarity=0.771 Sum_probs=36.6
Q ss_pred CCcCccccCcccC-CCceeecCCCCCccchhhHHHHHhcC--CCCCccccc
Q 039247 134 PFDCAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDT 181 (365)
Q Consensus 134 ~~~CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~ 181 (365)
...|+||++.+.- ++...+.+.|||.|-.+||+.||.+. ..||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3579999999874 44444444599999999999999632 359999764
No 52
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00041 Score=67.65 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=37.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-CCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-STCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l~~~ 185 (365)
..+|+||+...-- ...|+ |+|.||..||..-.... .+|++||.++...
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3579999988443 45667 99999999998876654 5799999998643
No 53
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00038 Score=62.49 Aligned_cols=42 Identities=26% Similarity=0.609 Sum_probs=33.4
Q ss_pred CceeeeeccCCCCCCcCccccCcccCCCceeecCCCCCccchh
Q 039247 121 PVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHIN 163 (365)
Q Consensus 121 P~~~y~~~~~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~ 163 (365)
|.+.|++..-.++..+|.||||+++.++.+..|| |-.+||+.
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 4555555443456678999999999999999999 99999963
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00047 Score=51.27 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=31.8
Q ss_pred CcCccccCcccCCCceeecCCCCCc-cchhhHHHHHh-cCCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLL-SNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~-~~~sCPlCR~~l~ 183 (365)
.+|.||++.-- |.+.. .|||. .|.+|-.+-++ .+..||+||+++.
T Consensus 8 dECTICye~pv--dsVlY--tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPV--DSVLY--TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcc--hHHHH--HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 68999998733 33433 39995 56777555444 6789999999873
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.56 E-value=0.0014 Score=66.86 Aligned_cols=51 Identities=25% Similarity=0.700 Sum_probs=42.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
.++..|++|...+.+. +..+. |||.||..|+..|+..+..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCC--CCCCC-CCCcccccccchhhccCcCCcccccccchh
Confidence 5567899999998873 22234 999999999999999999999999887544
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.45 E-value=0.0031 Score=47.34 Aligned_cols=42 Identities=24% Similarity=0.626 Sum_probs=27.4
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPL 177 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPl 177 (365)
-...|+|.+..|++ .++-. .|+|+|-.+.|..|+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999999887 34444 499999999999999543 35998
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.35 E-value=0.0017 Score=65.40 Aligned_cols=45 Identities=38% Similarity=0.939 Sum_probs=37.4
Q ss_pred CcCccccCcccC-CCceeecCCCCCccchhhHHHHHhcCC--CCCcccc
Q 039247 135 FDCAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLSNS--TCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~~~--sCPlCR~ 180 (365)
..|-.|-+.+-- ++.+.-|| |.|+||..|+...|.++. +||.||.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 469999888764 45677889 999999999999998764 6999994
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0025 Score=60.12 Aligned_cols=51 Identities=29% Similarity=0.750 Sum_probs=43.1
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc--------CCCCCcccccccCCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS--------NSTCPLCRDTLFTPG 186 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~sCPlCR~~l~~~~ 186 (365)
...|..|-..+..+|.+|+. |-|+||.+|++.|... .-.||.|-.+|+...
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 45799999999999999875 9999999999999864 234999999998654
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.28 E-value=0.0013 Score=57.48 Aligned_cols=38 Identities=16% Similarity=0.518 Sum_probs=31.6
Q ss_pred CCcCccccCcccCCCceeecCCCC------CccchhhHHHHHhcC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCS------HAFHINCIDTWLLSN 172 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~------H~FH~~CI~~Wl~~~ 172 (365)
..+|+||++.+..++.++.++ |+ |.||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 458999999999977777777 76 999999999995433
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.80 E-value=0.0034 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.621 Sum_probs=39.7
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
++.|-||..+|+. .+++. |||.||..|...=++....|-+|.....
T Consensus 196 PF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence 5689999999988 55665 9999999999999999999999987553
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.79 E-value=0.0057 Score=69.67 Aligned_cols=52 Identities=27% Similarity=0.629 Sum_probs=40.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC----------CCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN----------STCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~----------~sCPlCR~~l~~ 184 (365)
..++.|.||+.+--.....+.|. |+|+||.+|...-|+++ -+||+|..+|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34567999998877767777887 99999999997766542 259999998753
No 62
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0081 Score=58.13 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=36.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~l~ 183 (365)
....+|++|-+. +.......+ |+|+||.-||..-+... .+||.|-.+..
T Consensus 237 t~~~~C~~Cg~~--PtiP~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEP--PTIPHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCC--CCCCeeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345789999876 323344555 99999999999977644 68999977654
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.52 E-value=0.0052 Score=64.06 Aligned_cols=51 Identities=29% Similarity=0.568 Sum_probs=39.4
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-----CCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-----NSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----~~sCPlCR~~l~~~ 185 (365)
.++..+|-+|-+.-++ ..+.. |.|.||..||..+... +.+||.|...|..+
T Consensus 533 nk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3556789999887444 55666 9999999999888753 46899998877544
No 64
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.51 E-value=0.0032 Score=62.18 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=40.4
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
......|.+|-..|-+...+. -|-|.||..||...|....+||+|...+
T Consensus 12 ~n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceec
Confidence 345568999998888744333 3999999999999999999999998765
No 65
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.51 E-value=0.0067 Score=66.21 Aligned_cols=51 Identities=27% Similarity=0.760 Sum_probs=41.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-------CCCCcccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-------STCPLCRDTL 182 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-------~sCPlCR~~l 182 (365)
.+..+|.||++.+...+.+.-...|-|+||..||..|.++. -.||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 45678999999999887776666688999999999999752 1499998533
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.38 E-value=0.0064 Score=49.68 Aligned_cols=33 Identities=30% Similarity=0.768 Sum_probs=27.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCID 166 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~ 166 (365)
.+...|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 445679999999987 4566778 99999999975
No 67
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.22 E-value=0.012 Score=42.33 Aligned_cols=40 Identities=30% Similarity=0.897 Sum_probs=26.9
Q ss_pred CccccCcccCCCceeecCCCC-----CccchhhHHHHHhc--CCCCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCS-----HAFHINCIDTWLLS--NSTCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~-----H~FH~~CI~~Wl~~--~~sCPlC 178 (365)
|-||++.-.+++ ..+.| |. -..|..|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998877655 33456 65 37899999999984 4569887
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.023 Score=57.87 Aligned_cols=46 Identities=30% Similarity=0.750 Sum_probs=37.7
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--------CCCCcccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--------STCPLCRD 180 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--------~sCPlCR~ 180 (365)
.++|.||+++..-......+| |+|+||..|+..++..+ -.||-|.-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 468999999988878888999 99999999999998642 24776654
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.019 Score=54.94 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
.+.|+||.+.+...-.+.+|..|||+|+.+|+...+.....||+|-.++...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 36799999999998888888889999999999999999999999988886654
No 70
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.011 Score=57.80 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=39.4
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
++.|-||...|.. .+++. |+|.||..|-..-++....|.+|-+.+.
T Consensus 241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceecccccc
Confidence 4669999999988 55555 9999999999998889999999987653
No 71
>PHA03096 p28-like protein; Provisional
Probab=94.63 E-value=0.015 Score=56.96 Aligned_cols=46 Identities=30% Similarity=0.593 Sum_probs=34.1
Q ss_pred CcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcC---CCCCcccc
Q 039247 135 FDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSN---STCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~---~sCPlCR~ 180 (365)
-.|.||++..... ..-.+|+.|.|.||..||..|.... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4799999987653 2345788999999999999998642 34555544
No 72
>PHA02862 5L protein; Provisional
Probab=94.34 E-value=0.032 Score=49.41 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=33.1
Q ss_pred CcCccccCcccCCCceeecCCCC-----CccchhhHHHHHhc--CCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCS-----HAFHINCIDTWLLS--NSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~-----H~FH~~CI~~Wl~~--~~sCPlCR~~l~ 183 (365)
..|=||+++-.+ .+ -| |. ..-|..|+.+|+.. +..|++|+.++.
T Consensus 3 diCWIC~~~~~e--~~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDE--RN--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCC--Cc--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 469999998433 22 34 54 57899999999974 446999999874
No 73
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.31 E-value=0.017 Score=54.88 Aligned_cols=47 Identities=26% Similarity=0.643 Sum_probs=34.4
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccCCCC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFTPGF 187 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~~~~ 187 (365)
.|..|..-- ..+...++. |+|+||..|...- +. .||+|+.++.....
T Consensus 5 hCn~C~~~~-~~~~f~LTa-C~HvfC~~C~k~~---~~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFP-SQDPFFLTA-CRHVFCEPCLKAS---SPDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccC-CCCceeeee-chhhhhhhhcccC---Cccccccccceeeeeec
Confidence 477776443 367777776 9999999997652 33 89999999755443
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.29 E-value=0.023 Score=55.73 Aligned_cols=43 Identities=37% Similarity=0.845 Sum_probs=34.7
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCcccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~ 180 (365)
..|+.|...+.. ...+|.|+|.||.+||...|. +...||.|..
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 569999888766 334466999999999998876 5678999966
No 75
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.11 Score=51.52 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=36.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
....|+||+....++ .++..-|.+||..||...+..+..||+=..+.
T Consensus 299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345799999987663 23333699999999999999999999865554
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.83 E-value=0.062 Score=51.81 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=42.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
...+.|+|+..+|........+-.|||+|...||..- .....||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 4567899999999766566566559999999999996 23567999988876544
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.0024 Score=64.33 Aligned_cols=53 Identities=26% Similarity=0.647 Sum_probs=45.0
Q ss_pred CcCccccCcccCC-CceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCCCC
Q 039247 135 FDCAVCLCEFSEK-DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPGFS 188 (365)
Q Consensus 135 ~~CaICl~~f~~~-~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~~~ 188 (365)
..|+||...+... +++..+- |||++|..||..||....-||.|++.+....+.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~e 250 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNGFE 250 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhhHH
Confidence 4699999998876 6676676 999999999999999988899999998655443
No 78
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.058 Score=54.06 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=41.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.++..|+||...- ......| |+|.=|..||.+.|...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4667899998762 2355677 99999999999999999999999998864
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.41 E-value=0.072 Score=38.74 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=21.5
Q ss_pred CccccCcccCCC-ceeecCCCCCccchhhHHHHHh-cCCCCCcccccc
Q 039247 137 CAVCLCEFSEKD-KLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTL 182 (365)
Q Consensus 137 CaICl~~f~~~~-~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l 182 (365)
|++|.+++...+ .+.--+ |++.++..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 233333 889888888887765 366799999864
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.046 Score=59.97 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=31.1
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
..|..|--.++- ...-.. |+|.||.+|+. .....||-|+.++
T Consensus 841 skCs~C~~~Ldl--P~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcccc--ceeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 469999777654 233344 99999999998 4556799998743
No 81
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.05 E-value=0.085 Score=47.45 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=34.1
Q ss_pred CCCcCccccCcccCCCceeecCCCC--C---ccchhhHHHHHhcC--CCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCS--H---AFHINCIDTWLLSN--STCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~--H---~FH~~CI~~Wl~~~--~sCPlCR~~l~~ 184 (365)
....|=||.++-.+ . .-| |. . .-|..|+..|+... .+|++|+.++..
T Consensus 7 ~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45689999988432 2 234 54 4 56999999999854 469999998743
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.074 Score=48.75 Aligned_cols=28 Identities=36% Similarity=1.045 Sum_probs=23.3
Q ss_pred CCCccchhhHHHHHhc----CC-------CCCccccccc
Q 039247 156 CSHAFHINCIDTWLLS----NS-------TCPLCRDTLF 183 (365)
Q Consensus 156 C~H~FH~~CI~~Wl~~----~~-------sCPlCR~~l~ 183 (365)
||.-||.-|+..||+. ++ .||.|-.++.
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 9999999999999974 11 4999988774
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.18 E-value=0.09 Score=37.17 Aligned_cols=41 Identities=22% Similarity=0.605 Sum_probs=22.8
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHhcCC--CCCcc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS--TCPLC 178 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~--sCPlC 178 (365)
|.+|.+..-.+..-... .|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777765555433322 3888999999999998765 69988
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.1 Score=50.65 Aligned_cols=47 Identities=34% Similarity=0.793 Sum_probs=37.8
Q ss_pred CcCccccCcccCCCc---eeecCCCCCccchhhHHHHHhcC-CCCCcccccc
Q 039247 135 FDCAVCLCEFSEKDK---LRLLPMCSHAFHINCIDTWLLSN-STCPLCRDTL 182 (365)
Q Consensus 135 ~~CaICl~~f~~~~~---v~~lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l 182 (365)
..|-||-++|+..+. .++|. |||.|+..|+..-+... ..||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 479999999997642 45665 99999999998876644 3699999985
No 85
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.72 E-value=0.34 Score=49.05 Aligned_cols=30 Identities=27% Similarity=0.888 Sum_probs=22.6
Q ss_pred CCCccchhhHHHHHhc-------------CCCCCcccccccCC
Q 039247 156 CSHAFHINCIDTWLLS-------------NSTCPLCRDTLFTP 185 (365)
Q Consensus 156 C~H~FH~~CI~~Wl~~-------------~~sCPlCR~~l~~~ 185 (365)
|.-.+|.+|+.+|+.+ +-+||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4456789999999854 23599999987643
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.42 E-value=0.15 Score=38.09 Aligned_cols=43 Identities=28% Similarity=0.581 Sum_probs=30.6
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.|..|... +.+-.++| |+|+.+..|.+.+ +-+-||+|..++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 35555443 23345678 9999999998875 55679999988754
No 87
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.32 E-value=0.12 Score=56.35 Aligned_cols=47 Identities=28% Similarity=0.711 Sum_probs=36.6
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCcccccccCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDTLFTPG 186 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~l~~~~ 186 (365)
..|.||++ .+...+++ |+|.||.+|+..-+... ..||.||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 33466667 99999999998877643 25999999875543
No 88
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.063 Score=52.57 Aligned_cols=42 Identities=26% Similarity=0.639 Sum_probs=30.5
Q ss_pred CCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+||++.-.+ ...|+ |||. -|..|-.. -+.||+||+-+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 4579999998555 77888 9995 45566433 237999998663
No 89
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.87 E-value=0.25 Score=49.63 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=36.9
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHH--HHhcCCCCCcccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT--WLLSNSTCPLCRDTL 182 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~--Wl~~~~sCPlCR~~l 182 (365)
.+...|.||-+.+.- .-++| |+|..|..|-.+ .|-....||+||...
T Consensus 59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 445679999887554 66888 999999999755 345678999999865
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.85 E-value=0.3 Score=43.99 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=21.8
Q ss_pred CCcCccccCcccCCCceeecC----------CCC-CccchhhHHHHHh
Q 039247 134 PFDCAVCLCEFSEKDKLRLLP----------MCS-HAFHINCIDTWLL 170 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp----------~C~-H~FH~~CI~~Wl~ 170 (365)
+..|+|||+--.+. |.++- .|+ -.-|..|+++.-+
T Consensus 2 d~~CpICme~PHNA--VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA--VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce--EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 45799999885442 22211 144 3458999999753
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.15 Score=50.46 Aligned_cols=42 Identities=36% Similarity=0.822 Sum_probs=29.3
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
.|--|- |-....-|+.| |.|+||.+|-.. ...+.||+|-..+
T Consensus 92 fCd~Cd--~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCD--FPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccC--Ccceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 476673 33333446788 999999999654 3456899997765
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.43 E-value=0.33 Score=47.44 Aligned_cols=45 Identities=27% Similarity=0.707 Sum_probs=37.7
Q ss_pred CcCccccCcccCCC-ceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 135 FDCAVCLCEFSEKD-KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~~-~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
..|+||.+.+-... .+..++ |||..|..|+..-...+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 45999998877654 355676 9999999999999888889999988
No 93
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.83 E-value=0.81 Score=34.12 Aligned_cols=34 Identities=26% Similarity=0.727 Sum_probs=29.6
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHH
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT 167 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~ 167 (365)
...|.+|-+.|.+++.+.+.|.|+-.+|..|-+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3579999999998888888999999999999544
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.67 E-value=0.29 Score=54.18 Aligned_cols=36 Identities=25% Similarity=0.593 Sum_probs=28.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL 169 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl 169 (365)
..+..|.+|...+... .-.+.| |||.||.+||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 3456899999888764 456777 99999999997764
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.33 E-value=0.2 Score=57.35 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=38.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~ 181 (365)
.+...|.||++.+.....+. .|+|.+|..|+..|+..+..||.|...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence 44568999999987533232 299999999999999999999999853
No 96
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=86.21 E-value=1.4 Score=36.16 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039247 35 SSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLV 71 (365)
Q Consensus 35 ss~s~~~isp~iliIIvILavv~~i~~ll~llvr~l~ 71 (365)
.+++....+..+.++|++++++.+++++..++.|-++
T Consensus 27 p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlI 63 (91)
T PF01708_consen 27 PSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLI 63 (91)
T ss_pred CCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888877777777777777777777766543
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.85 E-value=0.42 Score=34.75 Aligned_cols=43 Identities=33% Similarity=0.736 Sum_probs=25.2
Q ss_pred cCccccCcccCCCceeecCCCC-CccchhhHHHHHhcCCCCCcccccccC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCS-HAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~-H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.|--|+-+... ++ . |. |..+..|+..-|.....||+|..++++
T Consensus 4 nCKsCWf~~k~---Li--~-C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---LI--K-CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---EE--E--SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC---ee--e-ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 46667655333 33 2 65 999999999998899999999998875
No 98
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=0.29 Score=52.58 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=32.3
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
..|.||+..|-.....-+.+.|||..|..|+..- -+.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 4699999998876544444459999999999874 567898 543
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.88 E-value=0.76 Score=46.11 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=35.7
Q ss_pred CCCcCccccCcccCCCcee-ecCCCCCccchhhHHHHHh-cCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLR-LLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~-~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~~ 184 (365)
+++.|+.|++++...|+-. -.| ||...|.-|-..--+ -+..||-||+-+..
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3445999999998876543 345 998888888554322 24579999996643
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.60 E-value=0.6 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.909 Sum_probs=21.3
Q ss_pred CCCCccchhhHHHHHhcCCCCCc
Q 039247 155 MCSHAFHINCIDTWLLSNSTCPL 177 (365)
Q Consensus 155 ~C~H~FH~~CI~~Wl~~~~sCPl 177 (365)
.|+|+.|..|...|++....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 101
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.24 E-value=2.9 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 46 VLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 46 iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
++-||+.+++.+.++.+..++.-|+.|++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33344444444444444444444444443
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=0.59 Score=43.85 Aligned_cols=39 Identities=31% Similarity=0.715 Sum_probs=28.8
Q ss_pred CccccCcccCCCceeecCCCCC-ccchhhHHHHHhcCCCCCccccccc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSH-AFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H-~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
|-.|.+. +..|.++| |.| .+|..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8788776 55588999 997 677788543 345999988654
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.07 E-value=1 Score=45.94 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC---CCCcc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS---TCPLC 178 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---sCPlC 178 (365)
.-+.|+|=.+.-.++..+..|. |||+...+-|.+-..... -||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3468999888888888888888 999999999999766544 49999
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.90 E-value=0.9 Score=45.00 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=31.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+-.+|+||.+.+.+. +...+ =||+-|..|=. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCccccccc
Confidence 346899999998873 22222 35777777743 45778999999885
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.05 E-value=1.2 Score=49.12 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=38.8
Q ss_pred CCCCcCccccCcccCCCceeecCCCC---CccchhhHHHHHhcC--CCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCS---HAFHINCIDTWLLSN--STCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~---H~FH~~CI~~Wl~~~--~sCPlCR~~l~~ 184 (365)
.+...|-||..+=.+++++---.+|. -..|.+|+..|+.-. ..|-+|+.++.-
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 44578999999977777664322343 467999999999843 359999998743
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.89 E-value=1 Score=49.53 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCCcCccccCcccCCC---ceeecCCCCCccchhhHHHHHhc------CCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKD---KLRLLPMCSHAFHINCIDTWLLS------NSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~---~v~~lp~C~H~FH~~CI~~Wl~~------~~sCPlCR~~l~~ 184 (365)
....|.||..++.+++ .+..+..|+|.||..||..|+.+ +-.|++|...|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3457888888888732 22233469999999999999964 3458999887743
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=1.1 Score=47.56 Aligned_cols=46 Identities=35% Similarity=0.836 Sum_probs=38.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
....|.+|+.+. ..+..+ |. |..|+..|+..+.+||+|+..+...+
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 346899999997 356666 88 89999999999999999999876554
No 108
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.46 E-value=1.6 Score=42.82 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=35.8
Q ss_pred cCccccCccc--CCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccCCC
Q 039247 136 DCAVCLCEFS--EKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFTPG 186 (365)
Q Consensus 136 ~CaICl~~f~--~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~~~ 186 (365)
.|++|...-- ++-.+.+-+ |+|..|..|++.-+..+. .||.|-..+--..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 4888876533 223334445 999999999999988765 6999977664433
No 109
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.32 E-value=2.8 Score=36.31 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 039247 46 VLFIIVILAVLFFI 59 (365)
Q Consensus 46 iliIIvILavv~~i 59 (365)
++||+.+++.++++
T Consensus 67 ~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 67 IGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 34444444444333
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.66 E-value=0.85 Score=43.79 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=37.3
Q ss_pred CCCcCccccCccc--CCCceeecCCCCCccchhhHHHHHhcCC-CCC--ccccc
Q 039247 133 EPFDCAVCLCEFS--EKDKLRLLPMCSHAFHINCIDTWLLSNS-TCP--LCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~--~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCP--lCR~~ 181 (365)
.+..|+||..+.- ++-++.+-|-|-|..|..|+++-+...+ .|| -|-.=
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4557999997743 4445556667999999999999998776 599 78553
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=76.37 E-value=1.1 Score=43.30 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=36.9
Q ss_pred CCcCccccCcccCCCc-eeecCCCC-----CccchhhHHHHHh--cCCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDK-LRLLPMCS-----HAFHINCIDTWLL--SNSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~-v~~lp~C~-----H~FH~~CI~~Wl~--~~~sCPlCR~~l~~~ 185 (365)
...|=||.++...... ..+.| |. +..|..|+..|+. ....|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999998765432 33455 65 6779999999998 445699998866443
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.28 E-value=2.5 Score=46.40 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=31.0
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPL 177 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPl 177 (365)
..|.+|--.+.. .....+.|+|.-|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 358888655443 22334569999999999999999988877
No 113
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=75.61 E-value=2.5 Score=43.82 Aligned_cols=35 Identities=34% Similarity=0.717 Sum_probs=28.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS 171 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 171 (365)
+...|+||-.-|++ .++|| |+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhccc
Confidence 44579999999888 78899 9999999998765543
No 114
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.40 E-value=3 Score=44.87 Aligned_cols=44 Identities=27% Similarity=0.719 Sum_probs=27.3
Q ss_pred CCCcCccccC-----cccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 133 EPFDCAVCLC-----EFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~-----~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
..+.|.+|.. .|+. +.++....|+++||..|+.. ....||.|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~-~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFET-RNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCccccccc-ccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 4467888832 2222 22333334999999999554 4555999954
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.53 E-value=5.3 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 039247 47 LFIIVILAVLFFISGLLHLLVRFLVKHPSSS 77 (365)
Q Consensus 47 liIIvILavv~~i~~ll~llvr~l~rrr~~~ 77 (365)
.|+.+|+++++-+++++.+|..+++|++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7888888888888887766666665555443
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=1.6 Score=44.70 Aligned_cols=38 Identities=21% Similarity=0.610 Sum_probs=28.2
Q ss_pred CCCcCcccc-CcccCCCceeecCCCCCccchhhHHHHHhc
Q 039247 133 EPFDCAVCL-CEFSEKDKLRLLPMCSHAFHINCIDTWLLS 171 (365)
Q Consensus 133 ~~~~CaICl-~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 171 (365)
...+|.||. +....++...+. .|+|.||.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 356899999 444444555544 59999999999988874
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.34 E-value=1.6 Score=42.34 Aligned_cols=50 Identities=20% Similarity=0.604 Sum_probs=34.9
Q ss_pred CCCcCccccCcccCCCce-eecCCCC-----CccchhhHHHHHhcC--------CCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKL-RLLPMCS-----HAFHINCIDTWLLSN--------STCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v-~~lp~C~-----H~FH~~CI~~Wl~~~--------~sCPlCR~~l~ 183 (365)
.+..|=||+..=+++-.- -+-| |. |-.|..|+..|+..+ .+||-|+.+..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345799999875543332 2334 63 889999999999532 25999998764
No 118
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.93 E-value=6.5 Score=38.14 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=38.2
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPGF 187 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~~ 187 (365)
.+.|+|---+|........+-.|||+|-..-+.+- ...+|++|.+.+...+.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 46799987777665554444459999998887773 46789999988866553
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.04 E-value=2.3 Score=41.96 Aligned_cols=31 Identities=19% Similarity=0.688 Sum_probs=24.1
Q ss_pred CCCccchhhHHHHHhc-------------CCCCCcccccccCCC
Q 039247 156 CSHAFHINCIDTWLLS-------------NSTCPLCRDTLFTPG 186 (365)
Q Consensus 156 C~H~FH~~CI~~Wl~~-------------~~sCPlCR~~l~~~~ 186 (365)
|.-.+|..|+.+|+.. .-+||+||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5678889999998842 346999999886554
No 120
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.96 E-value=2.3 Score=40.16 Aligned_cols=43 Identities=33% Similarity=0.823 Sum_probs=34.1
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
..|.+|.+-.-.+ ++.- +|+-.+|..|+...+++...||.|-.
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhc
Confidence 4799998875542 3333 48889999999999999999999954
No 121
>PF15102 TMEM154: TMEM154 protein family
Probab=67.34 E-value=1.5 Score=38.99 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=6.6
Q ss_pred hhhHHHHHhc
Q 039247 162 INCIDTWLLS 171 (365)
Q Consensus 162 ~~CI~~Wl~~ 171 (365)
.+=|++|+.+
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 5667777754
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=67.17 E-value=4.1 Score=29.99 Aligned_cols=43 Identities=26% Similarity=0.503 Sum_probs=22.0
Q ss_pred CccccCcccCCC------ceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 137 CAVCLCEFSEKD------KLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 137 CaICl~~f~~~~------~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
|.-|+..|.... ....-|.|++.|+.+|=.--=+.--+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 566777777642 3455678999999999333212334699984
No 123
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=66.88 E-value=5.3 Score=25.90 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=25.3
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
.|..|.+.+.+.+..... =+..||.+| ..|..|..+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 388898888776333222 468899888 4678887765
No 124
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=66.87 E-value=4.8 Score=35.44 Aligned_cols=53 Identities=17% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlCR~~l~~~ 185 (365)
.-.+|.||.+.-.+..-+.----||...|..|-....+ .++.||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34689999988554322211112898888888655433 467899999987654
No 125
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.57 E-value=7.6 Score=33.18 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=34.3
Q ss_pred CCcCccccCcccCC----------CceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 134 PFDCAVCLCEFSEK----------DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 134 ~~~CaICl~~f~~~----------~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
...|.-|+..|... .....-++|++.|+.+|=.-+-..-.+||.|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999998752 11233567999999999777766667899995
No 126
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=66.21 E-value=7.2 Score=38.68 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 47 LFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 47 liIIvILavv~~i~~ll~llvr~l~rr 73 (365)
+..+++++|+++|.+++.++.|+.+|+
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344455555666654443
No 127
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=65.97 E-value=3.3 Score=40.71 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039247 38 SGTRISPAVLFIIVILAVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~i~~ll~llvr~l~r 72 (365)
++..++..++-+|+++.+++|++++.++++|.+.+
T Consensus 269 ss~S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 269 SSKSVSDSLLPIILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhheeeEeecc
Confidence 33444444444444444444444444455554433
No 128
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.84 E-value=2.3 Score=46.86 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=32.4
Q ss_pred CcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCccc
Q 039247 135 FDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCR 179 (365)
Q Consensus 135 ~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR 179 (365)
..|.-|.+..... +.+.++. |+|+||..|+..-..++. |-.|-
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhh
Confidence 4799998876632 3567777 999999999988877666 65553
No 129
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=64.04 E-value=1.9 Score=47.07 Aligned_cols=46 Identities=30% Similarity=0.755 Sum_probs=35.7
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC---CCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS---TCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---sCPlCR~~l~ 183 (365)
..+|.||+..+... ..+ +|.|.|+..|+..-+...+ .||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 35899999987773 334 4999999999988776554 5999997654
No 130
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=62.23 E-value=7.4 Score=38.93 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=33.6
Q ss_pred CCcCccccCcccC---------CC-------ceeecCCCCCccchhhHHHHHhc---------CCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSE---------KD-------KLRLLPMCSHAFHINCIDTWLLS---------NSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~---------~~-------~v~~lp~C~H~FH~~CI~~Wl~~---------~~sCPlCR~~l~~ 184 (365)
..+|++|+..-.- +- .-...| |||+--..=..-|.+. +..||.|-..|..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4689999976220 00 011245 9999888888889764 4569999877654
No 131
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.20 E-value=5.9 Score=36.83 Aligned_cols=42 Identities=31% Similarity=0.815 Sum_probs=29.7
Q ss_pred CCCcCccccCc-----ccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 133 EPFDCAVCLCE-----FSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~~-----f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
..+.|.+|-+. |+. +.+...+.|+-+||..|.. ...||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 34689999753 222 3455666799999999966 267999954
No 132
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=58.09 E-value=48 Score=26.35 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.0
Q ss_pred HHHHHhhC
Q 039247 66 LVRFLVKH 73 (365)
Q Consensus 66 lvr~l~rr 73 (365)
+..|..|+
T Consensus 23 ~lHY~sk~ 30 (75)
T PF06667_consen 23 ILHYRSKW 30 (75)
T ss_pred HHHHHHhc
Confidence 33333333
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=57.27 E-value=6.8 Score=27.68 Aligned_cols=43 Identities=26% Similarity=0.535 Sum_probs=28.5
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHh------cCCCCCccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL------SNSTCPLCR 179 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~------~~~sCPlCR 179 (365)
.|.||......++ +..-..|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~-~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGD-MIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSS-EEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCC-eEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889998444444 444456999999999866433 123588775
No 135
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.79 E-value=8.3 Score=38.70 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=33.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
....|-.|.++.......+.- .|.|.||.+|=.---.+-..||.|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 345699998887776666554 49999999995443334456999964
No 136
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.78 E-value=8 Score=24.49 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=14.2
Q ss_pred cCccccCcccCCCceeecCCCCCcc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAF 160 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~F 160 (365)
.|+-|...+... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 477777665442 34456677777
No 137
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.71 E-value=8.8 Score=38.42 Aligned_cols=43 Identities=21% Similarity=0.506 Sum_probs=32.6
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC---CCCcc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS---TCPLC 178 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---sCPlC 178 (365)
+.|+|-.+.-.++..+..+. |||+.-.+-++..-+... -||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 57998666655556667777 999999999998655432 49999
No 138
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=53.59 E-value=8.8 Score=42.38 Aligned_cols=45 Identities=29% Similarity=0.652 Sum_probs=31.1
Q ss_pred CCcCccccCcccCC---------CceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 134 PFDCAVCLCEFSEK---------DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 134 ~~~CaICl~~f~~~---------~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
+..|+-|...|-.- ...-+.|.|.|.-|.+-|.. ++.||+|+..+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 45677777777521 12345677999999877654 67899998765
No 139
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=50.55 E-value=70 Score=25.39 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 039247 63 LHLLVRFLV 71 (365)
Q Consensus 63 l~llvr~l~ 71 (365)
..+++.++.
T Consensus 19 p~wl~lHY~ 27 (75)
T TIGR02976 19 PLWLILHYR 27 (75)
T ss_pred HHHHHHHHH
Confidence 334444443
No 140
>PHA02650 hypothetical protein; Provisional
Probab=50.06 E-value=46 Score=26.75 Aligned_cols=13 Identities=0% Similarity=0.053 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 039247 58 FISGLLHLLVRFL 70 (365)
Q Consensus 58 ~i~~ll~llvr~l 70 (365)
++++++.++.+..
T Consensus 61 i~~l~~flYLK~~ 73 (81)
T PHA02650 61 IVALFSFFVFKGY 73 (81)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444444443
No 141
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=49.50 E-value=12 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=27.7
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
|+.|...+...+.+... -+..||..| ..|-.|+.+|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 77788888866554322 678899888 4688898877543
No 142
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=49.41 E-value=19 Score=26.06 Aligned_cols=42 Identities=24% Similarity=0.622 Sum_probs=19.3
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcC---C--CCCccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN---S--TCPLCRDT 181 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~---~--sCPlCR~~ 181 (365)
.|+|....+.. .+|-.. |.|.-+.+ ++.||..+ . .||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 58888877765 455555 99974322 34566532 2 49999763
No 143
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=48.73 E-value=24 Score=29.85 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039247 49 IIVILAVLFFISGLLHLLVRFLVKHPS 75 (365)
Q Consensus 49 IIvILavv~~i~~ll~llvr~l~rrr~ 75 (365)
+++|++++++++++.+++.....+++.
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~ 29 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445555555555555555554444443
No 144
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=48.55 E-value=67 Score=29.20 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 47 LFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 47 liIIvILavv~~i~~ll~llvr~l~rr 73 (365)
+.=.+++++.|.++++++|++|.++-+
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444455555556666665433
No 145
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=48.27 E-value=20 Score=36.38 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039247 54 AVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 54 avv~~i~~ll~llvr~l~r 72 (365)
+|+++|.+++.++.||.+|
T Consensus 320 vvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 320 LIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3333444555666666444
No 146
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=16 Score=37.95 Aligned_cols=37 Identities=24% Similarity=0.603 Sum_probs=29.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS 171 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 171 (365)
.....|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 445689999999776 455556 9999999999998864
No 147
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=47.09 E-value=25 Score=35.29 Aligned_cols=50 Identities=24% Similarity=0.533 Sum_probs=37.1
Q ss_pred CCcCccccCcccCCCce-eecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKL-RLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v-~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+||.+.....+.. .=.| |+|..|..|...-...+.+||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 36799999987444333 2234 88888888988888888999999976643
No 148
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=46.97 E-value=40 Score=27.38 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=13.4
Q ss_pred CCCCCchHHHHHHHHHHHHHH
Q 039247 38 SGTRISPAVLFIIVILAVLFF 58 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~ 58 (365)
....+.|.+++.|+|++|+++
T Consensus 18 ~~~~l~pn~lMtILivLVIIi 38 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIII 38 (85)
T ss_pred cccccChhHHHHHHHHHHHHH
Confidence 456788888776665555433
No 149
>PTZ00046 rifin; Provisional
Probab=46.84 E-value=21 Score=36.40 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039247 51 VILAVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 51 vILavv~~i~~ll~llvr~l~r 72 (365)
+.++|+++|.+++.++.||.+|
T Consensus 322 iAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 322 VAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3333334444555666666443
No 150
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=46.81 E-value=6.5 Score=40.39 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=0.0
Q ss_pred CCcCccccCccc-------------CCC---ceeecCCCCCccchhhHHHHHhc---------CCCCCccccccc
Q 039247 134 PFDCAVCLCEFS-------------EKD---KLRLLPMCSHAFHINCIDTWLLS---------NSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~-------------~~~---~v~~lp~C~H~FH~~CI~~Wl~~---------~~sCPlCR~~l~ 183 (365)
..+|++|+..-. .+. .....| |||+--.....-|-+. +..||.|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 568999996522 110 112356 9999989999999763 346999988775
No 151
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=46.43 E-value=11 Score=25.49 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=16.6
Q ss_pred cCccccCcccCCCc-------eeecCCCCCccc
Q 039247 136 DCAVCLCEFSEKDK-------LRLLPMCSHAFH 161 (365)
Q Consensus 136 ~CaICl~~f~~~~~-------v~~lp~C~H~FH 161 (365)
.|+-|...|..++. ....+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888876543 122345778775
No 152
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=45.64 E-value=11 Score=36.89 Aligned_cols=48 Identities=33% Similarity=0.687 Sum_probs=34.5
Q ss_pred CcCccccCcccCCCceee---cCCCCCccchhhHHHHHhc---------CCCCCcccccc
Q 039247 135 FDCAVCLCEFSEKDKLRL---LPMCSHAFHINCIDTWLLS---------NSTCPLCRDTL 182 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~---lp~C~H~FH~~CI~~Wl~~---------~~sCPlCR~~l 182 (365)
.+|.+|.+++...+..+. -+.|+-++|..|+..-+.. ...||.|+.-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 479999999955444433 2368899999999984432 23599998844
No 153
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.00 E-value=13 Score=36.05 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS 171 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 171 (365)
++...|+.||..+.+ ..++| =||+|+.+||...+..
T Consensus 41 K~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred CCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHHH
Confidence 445679999999887 66777 8999999999998753
No 154
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=44.53 E-value=40 Score=26.91 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=4.5
Q ss_pred HHHHHHhhCC
Q 039247 65 LLVRFLVKHP 74 (365)
Q Consensus 65 llvr~l~rrr 74 (365)
-+.|+++.-.
T Consensus 47 RCfrIllDPY 56 (81)
T PF11057_consen 47 RCFRILLDPY 56 (81)
T ss_pred HHHHHHcChh
Confidence 3445554443
No 155
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=43.03 E-value=26 Score=33.16 Aligned_cols=23 Identities=48% Similarity=0.753 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 039247 43 SPAVLFIIVILAVLFFISGLLHL 65 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~l 65 (365)
-..|||.+||++|+|+|..+|++
T Consensus 127 K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655444433
No 156
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=42.61 E-value=48 Score=31.85 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 039247 59 ISGLLHLLVRFLVKHPSSS 77 (365)
Q Consensus 59 i~~ll~llvr~l~rrr~~~ 77 (365)
|.+++++++-+++-+++..
T Consensus 200 itl~vf~LvgLyr~C~k~d 218 (259)
T PF07010_consen 200 ITLSVFTLVGLYRMCWKTD 218 (259)
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 3444455666666665543
No 157
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.46 E-value=14 Score=27.90 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=18.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL 169 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl 169 (365)
+...|.+|...|.--..-.--..||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4568999999996643333444699999999875543
No 158
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=40.44 E-value=10 Score=37.40 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 039247 32 SPSSSSSGTRISPAVLFIIVILAVLFFISGLLHLL 66 (365)
Q Consensus 32 ~~~ss~s~~~isp~iliIIvILavv~~i~~ll~ll 66 (365)
+.++.+.+.++.|++++|-+|++++|+.++++..+
T Consensus 267 Snss~S~s~~l~piil~IG~vl~i~~Ig~~ifK~~ 301 (305)
T PF04639_consen 267 SNSSKSVSDSLLPIILIIGGVLLIVFIGYFIFKRL 301 (305)
T ss_pred cCccchhhhhhhHHHHHHHHHHHHHHhhheeeEee
Confidence 34456677789999998888888888777665443
No 159
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.43 E-value=34 Score=33.85 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.2
Q ss_pred HHHHHHhhCC
Q 039247 65 LLVRFLVKHP 74 (365)
Q Consensus 65 llvr~l~rrr 74 (365)
+++++++||.
T Consensus 278 LYiWlyrrRK 287 (295)
T TIGR01478 278 LYIWLYRRRK 287 (295)
T ss_pred HHHHHHHhhc
Confidence 3444444443
No 160
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=40.14 E-value=55 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
..++-+++.++++++++++|+.+.++|-..+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5556666666666666666666666665444
No 161
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.01 E-value=41 Score=25.39 Aligned_cols=44 Identities=30% Similarity=0.748 Sum_probs=33.2
Q ss_pred cCccccCcccCCC-ceeecCCCC--CccchhhHHHHHhcCCCCCcccccccC
Q 039247 136 DCAVCLCEFSEKD-KLRLLPMCS--HAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 136 ~CaICl~~f~~~~-~v~~lp~C~--H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.|-.|-.++.++. ..++ |. ..|+.+|.+.-| +..||.|-..+..
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 5778888888765 3333 54 689999999865 7789999877754
No 162
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=39.01 E-value=40 Score=27.71 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=4.1
Q ss_pred HHHHHhhCCC
Q 039247 66 LVRFLVKHPS 75 (365)
Q Consensus 66 lvr~l~rrr~ 75 (365)
.+.|+++|++
T Consensus 51 wfvCC~kRkr 60 (94)
T PF05393_consen 51 WFVCCKKRKR 60 (94)
T ss_pred HHHHHHHhhh
Confidence 3334444443
No 163
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.68 E-value=36 Score=27.78 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039247 38 SGTRISPAVLFIIVILAVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~i~~ll~llvr~l~r 72 (365)
.+-++.|.+++++.+++|.++ +.||++.++...
T Consensus 54 ~GlKV~PvvVLvmSvgFIasV--~~LHi~gK~~~~ 86 (88)
T KOG3457|consen 54 PGLKVDPVVVLVMSVGFIASV--FALHIWGKLTRS 86 (88)
T ss_pred CCceeCCeeehhhhHHHHHHH--HHHHHHHHHhhc
Confidence 467899998888877776544 457888887654
No 164
>PTZ00370 STEVOR; Provisional
Probab=38.64 E-value=37 Score=33.65 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.2
Q ss_pred HHHHHHhhCC
Q 039247 65 LLVRFLVKHP 74 (365)
Q Consensus 65 llvr~l~rrr 74 (365)
+++++++||.
T Consensus 274 lYiwlyrrRK 283 (296)
T PTZ00370 274 LYIWLYRRRK 283 (296)
T ss_pred HHHHHHHhhc
Confidence 3444444443
No 165
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.72 E-value=30 Score=28.58 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039247 44 PAVLFIIVILAVLFFIS 60 (365)
Q Consensus 44 p~iliIIvILavv~~i~ 60 (365)
..+|++.++|+++|||+
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 166
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=37.66 E-value=66 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=18.0
Q ss_pred CCchH-HHHHHHHHH-HHHHHHHHHHHHHHHHhhC
Q 039247 41 RISPA-VLFIIVILA-VLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 41 ~isp~-iliIIvILa-vv~~i~~ll~llvr~l~rr 73 (365)
+|... .+|++.||. +++++++|+++|+.+|+|+
T Consensus 266 Di~~YHT~fLl~ILG~~~livl~lL~vLl~yCrrk 300 (807)
T PF10577_consen 266 DITTYHTVFLLAILGGTALIVLILLCVLLCYCRRK 300 (807)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56653 234444444 5555666666666655554
No 167
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.17 E-value=18 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=17.2
Q ss_pred cCccccCcccCCCce-------eecCCCCCccc
Q 039247 136 DCAVCLCEFSEKDKL-------RLLPMCSHAFH 161 (365)
Q Consensus 136 ~CaICl~~f~~~~~v-------~~lp~C~H~FH 161 (365)
+|+=|...|..+|.. ...++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 688888888866541 12345888875
No 168
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=35.64 E-value=47 Score=29.85 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=4.0
Q ss_pred CchHHHHHHH
Q 039247 42 ISPAVLFIIV 51 (365)
Q Consensus 42 isp~iliIIv 51 (365)
++.-+++|++
T Consensus 27 fsthm~tILi 36 (189)
T PF05568_consen 27 FSTHMYTILI 36 (189)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 169
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=19 Score=36.81 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCcCccccCcccCCCc--eeecCCCCCccchhhHHHHHhcCCCCCcc
Q 039247 134 PFDCAVCLCEFSEKDK--LRLLPMCSHAFHINCIDTWLLSNSTCPLC 178 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~--v~~lp~C~H~FH~~CI~~Wl~~~~sCPlC 178 (365)
-.+|+.|.-.++-... ..... |+|-|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3578888776654332 23344 99999999999998877777554
No 170
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.91 E-value=1.2e+02 Score=24.15 Aligned_cols=16 Identities=13% Similarity=-0.110 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 039247 57 FFISGLLHLLVRFLVK 72 (365)
Q Consensus 57 ~~i~~ll~llvr~l~r 72 (365)
|++++...+++-+|..
T Consensus 13 F~ifVaPiWL~LHY~s 28 (75)
T PRK09458 13 FVLFVAPIWLWLHYRS 28 (75)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3333334444444433
No 171
>PF14979 TMEM52: Transmembrane 52
Probab=34.64 E-value=1.1e+02 Score=27.52 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCC
Q 039247 40 TRISPAVLFIIVILAV-LFFISGLLHLLVRFLVKHPS 75 (365)
Q Consensus 40 ~~isp~iliIIvILav-v~~i~~ll~llvr~l~rrr~ 75 (365)
++-+..++|.++++++ ++++-++...++||+..+++
T Consensus 14 ~~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 14 TRWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566666665554444 34556677788885444443
No 172
>PF15179 Myc_target_1: Myc target protein 1
Probab=34.05 E-value=74 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039247 40 TRISPAVLFIIVILAVLFFISGLLHLLVRFLVKHPS 75 (365)
Q Consensus 40 ~~isp~iliIIvILavv~~i~~ll~llvr~l~rrr~ 75 (365)
.+...+|+-+-+..+|.++|-+++.+|..|+.|||-
T Consensus 16 f~~~~lIlaF~vSm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 16 FDWEDLILAFCVSMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456677777777777777777777778888776653
No 173
>PF12669 P12: Virus attachment protein p12 family
Probab=33.74 E-value=39 Score=25.34 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.4
Q ss_pred HHHHhh
Q 039247 67 VRFLVK 72 (365)
Q Consensus 67 vr~l~r 72 (365)
++++++
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 444433
No 174
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.67 E-value=35 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=24.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHH
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL 169 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl 169 (365)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46899988887644333344599999999976543
No 175
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.72 E-value=23 Score=35.08 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN 172 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~ 172 (365)
.....|.+|.|.+++..-|..-..=.|.||..|-..-++.+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 34578999999999865444222236999999998887754
No 176
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.45 E-value=35 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=10.6
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhH
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCI 165 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI 165 (365)
.|.+|...... .....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 58888888666 334444459999999985
No 177
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.28 E-value=70 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
-|..+++++.+++.+++.+++.+...+..|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~ 48 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRR 48 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555544443
No 178
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=32.09 E-value=37 Score=37.13 Aligned_cols=13 Identities=8% Similarity=-0.225 Sum_probs=6.3
Q ss_pred CCCcccCCCCCCC
Q 039247 11 KDDLYTYPPPLSP 23 (365)
Q Consensus 11 ~~~~~~~~p~~~~ 23 (365)
.-||..--|..+|
T Consensus 241 ~LGy~V~~~~AqP 253 (684)
T PF12877_consen 241 ILGYRVQGIVAQP 253 (684)
T ss_pred hcCceeccccccc
Confidence 3466654444443
No 179
>PHA03240 envelope glycoprotein M; Provisional
Probab=32.07 E-value=49 Score=31.56 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
.-++.|||+|++++++|++++.+=-|.+-|++
T Consensus 211 aH~~WIiilIIiIiIIIL~cfKiPQKl~dKw~ 242 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFFFKIPQKLFDKWD 242 (258)
T ss_pred chHhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 33444444444455555454555555555554
No 180
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=31.64 E-value=39 Score=23.91 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=5.0
Q ss_pred HHHHHHHHhhC
Q 039247 63 LHLLVRFLVKH 73 (365)
Q Consensus 63 l~llvr~l~rr 73 (365)
+.++.++.-|+
T Consensus 27 ~~iYRKw~aRk 37 (43)
T PF08114_consen 27 LFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHH
Confidence 33455554443
No 181
>PF15050 SCIMP: SCIMP protein
Probab=31.31 E-value=95 Score=27.04 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 039247 57 FFISGLLHLLVRFLVKHPSSS 77 (365)
Q Consensus 57 ~~i~~ll~llvr~l~rrr~~~ 77 (365)
+++...+-+++.|+.|+..++
T Consensus 17 I~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444555555556665543
No 182
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=31.12 E-value=16 Score=36.13 Aligned_cols=9 Identities=44% Similarity=0.980 Sum_probs=0.0
Q ss_pred HHHhh-CCce
Q 039247 115 AFIDA-LPVF 123 (365)
Q Consensus 115 ~~i~~-LP~~ 123 (365)
.++.+ +|++
T Consensus 185 ~f~~KGiPvI 194 (290)
T PF05454_consen 185 TFISKGIPVI 194 (290)
T ss_dssp ----------
T ss_pred HHHhcCCcee
Confidence 44433 4543
No 183
>PHA02849 putative transmembrane protein; Provisional
Probab=31.05 E-value=1.3e+02 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 039247 39 GTRISPAVLFIIVILAVLFFISGLLHLL 66 (365)
Q Consensus 39 ~~~isp~iliIIvILavv~~i~~ll~ll 66 (365)
..++...+++.+.++.+.+++.+++.+.
T Consensus 11 ~f~~g~v~vi~v~v~vI~i~~flLlyLv 38 (82)
T PHA02849 11 EFDAGAVTVILVFVLVISFLAFMLLYLI 38 (82)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444433
No 184
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=30.22 E-value=1.2e+02 Score=23.08 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 039247 45 AVLFIIVILAVLF 57 (365)
Q Consensus 45 ~iliIIvILavv~ 57 (365)
.++.+++++.+++
T Consensus 6 ~Iy~~~Vi~l~vl 18 (58)
T PF13314_consen 6 LIYYILVIILIVL 18 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 3444433333333
No 186
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.60 E-value=1.2e+02 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 45 AVLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 45 ~iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
.+.++++++++++.+++-+++-.|+..+.
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444444455554443
No 187
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=29.44 E-value=36 Score=34.62 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 39 GTRISPAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 39 ~~~isp~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
...+|+++|+|+++.+.+-++++++--+.-+++|+|
T Consensus 312 ~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r 347 (350)
T PF15065_consen 312 VDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRR 347 (350)
T ss_pred ccchhHHHHHHHHHHhhHHHHHHHHhhheEEEeccc
Confidence 357888888887776665555444444444444444
No 188
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=29.25 E-value=19 Score=42.82 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=40.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDTL 182 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l 182 (365)
.....|-||+....+.+.+...- |.-.||..|+..-+..-+ .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34567999999988877666555 899999999999887543 599999865
No 189
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=29.02 E-value=2.5e+02 Score=26.01 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=9.3
Q ss_pred chhhHHHHH--hcCCCCCc
Q 039247 161 HINCIDTWL--LSNSTCPL 177 (365)
Q Consensus 161 H~~CI~~Wl--~~~~sCPl 177 (365)
+-+-+..|| .++..||+
T Consensus 125 ~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 125 PGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred ccccHHHHHHHHHhccCCc
Confidence 355677777 34444443
No 190
>PRK01844 hypothetical protein; Provisional
Probab=28.30 E-value=1.3e+02 Score=23.75 Aligned_cols=24 Identities=4% Similarity=0.225 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 039247 48 FIIVILAVLFFISGLLHLLVRFLV 71 (365)
Q Consensus 48 iIIvILavv~~i~~ll~llvr~l~ 71 (365)
|+++|++++.-+++-+++..+++.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333333344433
No 191
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.04 E-value=37 Score=36.49 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 41 RISPAVLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 41 ~isp~iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
.+.|+++++.++++++|++++++++..++|++-
T Consensus 6 ~l~pl~~~~~ivvv~i~~ilv~if~~~~~y~~a 38 (548)
T COG2268 6 GLMPLLMLIAIVVVVILVILVLIFFGKRFYIIA 38 (548)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhheeEEec
Confidence 456765555555555555444444444444433
No 192
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=27.92 E-value=1.1e+02 Score=21.61 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 039247 53 LAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 53 Lavv~~i~~ll~llvr~l~rr 73 (365)
++++++.+++..++.+++.++
T Consensus 16 l~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 16 LIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455556665554
No 193
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.87 E-value=1.2e+02 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.194 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 039247 57 FFISGLLHLLVRFL 70 (365)
Q Consensus 57 ~~i~~ll~llvr~l 70 (365)
++-++++.=++..+
T Consensus 53 L~y~~fLkDlIlv~ 66 (91)
T PF01708_consen 53 LAYTWFLKDLILVL 66 (91)
T ss_pred HHHHHHHHHHhhee
Confidence 33344444444333
No 194
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.69 E-value=58 Score=30.96 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q 039247 60 SGLLHLLVRFLV 71 (365)
Q Consensus 60 ~~ll~llvr~l~ 71 (365)
++++..++|+++
T Consensus 53 VI~i~v~vR~CR 64 (221)
T PF08374_consen 53 VIFIVVLVRYCR 64 (221)
T ss_pred HHHHHHHHHHHh
Confidence 344445556544
No 195
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=26.66 E-value=58 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=21.5
Q ss_pred CCCcCccccCcccCCCceee-cCCCCCccchhhHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRL-LPMCSHAFHINCIDT 167 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~-lp~C~H~FH~~CI~~ 167 (365)
....|.||....-. .+.- -+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~G~--~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGA--CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCce--eEEcCCCCCCcCCCHHHHHH
Confidence 34689999887222 2211 123888999999765
No 196
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=26.30 E-value=71 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 46 VLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 46 iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
+.|++++++++++++.++...++.+.++
T Consensus 3 ~vil~~iv~il~lvl~~l~~~Ir~lq~~ 30 (175)
T COG4741 3 IVILILIVFILALVLYLLRAYIRSLQGK 30 (175)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666655443
No 197
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.27 E-value=24 Score=25.61 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=5.6
Q ss_pred CCCcccccccC
Q 039247 174 TCPLCRDTLFT 184 (365)
Q Consensus 174 sCPlCR~~l~~ 184 (365)
.||+|.++|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988743
No 198
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.93 E-value=11 Score=36.40 Aligned_cols=48 Identities=31% Similarity=0.578 Sum_probs=36.0
Q ss_pred CcCccccCcccCC--Cc-eeecCC-------CCCccchhhHHHHHhcC-CCCCcccccc
Q 039247 135 FDCAVCLCEFSEK--DK-LRLLPM-------CSHAFHINCIDTWLLSN-STCPLCRDTL 182 (365)
Q Consensus 135 ~~CaICl~~f~~~--~~-v~~lp~-------C~H~FH~~CI~~Wl~~~-~sCPlCR~~l 182 (365)
..|.||...+..+ .. .+++.. |+|..+..|++.-+... ..||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 4699999999843 22 233333 99999999999987654 5799998764
No 199
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.63 E-value=1.6e+02 Score=31.82 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=15.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 41 RISPAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 41 ~isp~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
.+...++--+.++++++++++++++..++..|.+
T Consensus 554 ~~y~~l~~~~a~~~ll~l~~~~~c~~~~~~~~~~ 587 (642)
T PHA03281 554 KRYAAITGGFAALALLCLAIALICTAKKFGHKAY 587 (642)
T ss_pred EeehhhhhhhHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3333444444445555555555544444443333
No 200
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=24.76 E-value=41 Score=32.51 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.1
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNST 174 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~s 174 (365)
..|+|-+..+.. ..+-.+|+|.|-.+-|...|+...+
T Consensus 190 nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~t 226 (275)
T COG5627 190 NRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECT 226 (275)
T ss_pred ccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCce
Confidence 469987766443 4455569999999999999886665
No 201
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.32 E-value=1.9e+02 Score=19.63 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039247 46 VLFIIVILAVLFFISGLLHLLV 67 (365)
Q Consensus 46 iliIIvILavv~~i~~ll~llv 67 (365)
.+.++.+|.+++++.++-++.+
T Consensus 8 al~vv~iLt~~ILvFWfgvf~~ 29 (34)
T PF08113_consen 8 ALGVVMILTAFILVFWFGVFAL 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHHh
Confidence 3555556665555555544443
No 202
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=24.28 E-value=1.9e+02 Score=30.84 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=10.0
Q ss_pred chhhHHHHHhcCC
Q 039247 161 HINCIDTWLLSNS 173 (365)
Q Consensus 161 H~~CI~~Wl~~~~ 173 (365)
+..|+..||..|.
T Consensus 291 ~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 291 PKGSLCDYLKANT 303 (534)
T ss_pred cCCcHHHHHHhcc
Confidence 3778999998764
No 203
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.15 E-value=9.8 Score=29.89 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=20.9
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..|+.|..++.... +|.++..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 36999988865532 45555666443 345567999998874
No 204
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.14 E-value=45 Score=32.49 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=28.1
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC--CCCc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS--TCPL 177 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~--sCPl 177 (365)
..|+|-...+.. ..+-.+|||+|-.+-|...+.... .||+
T Consensus 177 ~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 177 NRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred ccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 457776555554 334446999999999999887644 3765
No 205
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.13 E-value=1.1e+02 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr~l~rr 73 (365)
..++.+.+++++++++++.++..+++.+...
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~ 43 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSL 43 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 206
>PLN02189 cellulose synthase
Probab=24.08 E-value=88 Score=36.18 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=33.1
Q ss_pred CcCccccCcccC---CCceeecCCCCCccchhhHHHHHh-cCCCCCccccccc
Q 039247 135 FDCAVCLCEFSE---KDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~---~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~ 183 (365)
..|.||-+++.. ++.-.-...|+--.|..|.+-=.+ .+++||-|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 479999999763 232333334777789999843222 3568999999875
No 207
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=24.06 E-value=75 Score=25.92 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=30.6
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|.-|...+.--| ..| |-.|+..+-.|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCCh
Confidence 457999988877733 446 88899999999999998854
No 208
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=23.97 E-value=64 Score=32.52 Aligned_cols=44 Identities=5% Similarity=-0.124 Sum_probs=30.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCC-ccchhhHHHHHhcCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSH-AFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H-~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
....|.+|-+..-. ....+ |+| +|+..|-. +....+||+|.+..
T Consensus 342 s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccc
Confidence 34578888666444 44566 997 67888876 55678899997643
No 209
>PHA03291 envelope glycoprotein I; Provisional
Probab=23.88 E-value=2.2e+02 Score=29.24 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=8.4
Q ss_pred HHHHHHHHhhCCCCCc
Q 039247 63 LHLLVRFLVKHPSSSA 78 (365)
Q Consensus 63 l~llvr~l~rrr~~~~ 78 (365)
+++|.|+.+|+++...
T Consensus 307 ~Ccl~R~~rRr~r~~~ 322 (401)
T PHA03291 307 ACCLHRRCRRRRRRPA 322 (401)
T ss_pred hhhhhhhhhcccCCcC
Confidence 4455565555554433
No 210
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.85 E-value=1.2e+02 Score=28.19 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=10.4
Q ss_pred CCCCCchHHHHHHHHHHHHHH
Q 039247 38 SGTRISPAVLFIIVILAVLFF 58 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~ 58 (365)
+..+...+|.=||+.|.++.+
T Consensus 156 s~FD~~SFiGGIVL~LGv~aI 176 (186)
T PF05283_consen 156 STFDAASFIGGIVLTLGVLAI 176 (186)
T ss_pred CCCchhhhhhHHHHHHHHHHH
Confidence 345555555555544444333
No 211
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=23.73 E-value=22 Score=35.23 Aligned_cols=42 Identities=21% Similarity=0.587 Sum_probs=33.4
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..|+-|.+-+-+...||.. -.|+||.+|+ .|-+|.+.|.+.+
T Consensus 93 TKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~TGd 134 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLATGD 134 (383)
T ss_pred CcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhcccccCC
Confidence 4699999999887777764 5799999995 4788888886543
No 212
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=42 Score=33.47 Aligned_cols=47 Identities=21% Similarity=0.556 Sum_probs=37.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
....|-||...+...... ..|.|-|+..|...|......||.|+.-.
T Consensus 104 ~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCc
Confidence 445799998887764332 34999999999999999999999998754
No 213
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.18 E-value=54 Score=24.14 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039247 48 FIIVILAVLFFISGLLHLLVR 68 (365)
Q Consensus 48 iIIvILavv~~i~~ll~llvr 68 (365)
+.-+|+++++|+++++.++-+
T Consensus 16 igGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHcC
Confidence 344556666666666665543
No 214
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=22.86 E-value=1.8e+02 Score=25.53 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 44 PAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 44 p~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
.+++|++++.+..||+.+++.-++|-.++..
T Consensus 43 ~~lYIL~vmgfFgff~~gImlsyvRSKK~E~ 73 (129)
T PF02060_consen 43 EYLYILVVMGFFGFFTVGIMLSYVRSKKREH 73 (129)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3456666666666666677666777655443
No 215
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.73 E-value=65 Score=28.80 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=23.1
Q ss_pred HHHhhCCceeeeeccCCCCCCcCccccCcccCCCceeec
Q 039247 115 AFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLL 153 (365)
Q Consensus 115 ~~i~~LP~~~y~~~~~~~~~~~CaICl~~f~~~~~v~~l 153 (365)
..++++-.+.|+.-.+..++...++|+=+-. ++.+.+.
T Consensus 78 ~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~-~nGvVlt 115 (151)
T PF14584_consen 78 NCVQKVGVVRYNAFEDMGGDLSFSLALLDDN-NNGVVLT 115 (151)
T ss_pred hccceEEEEEccCcccccccceeeeEEEeCC-CCEEEEE
Confidence 4455666678877666666777777765522 3344443
No 216
>PRK14710 hypothetical protein; Provisional
Probab=22.56 E-value=57 Score=25.82 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=13.4
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 039247 40 TRISPAVLFIIVILAVLFFIS 60 (365)
Q Consensus 40 ~~isp~iliIIvILavv~~i~ 60 (365)
++++..+++|..|+.++++++
T Consensus 6 sn~skm~ififaiii~v~lcv 26 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCV 26 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 467777777776666655543
No 217
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.52 E-value=30 Score=25.08 Aligned_cols=20 Identities=25% Similarity=0.678 Sum_probs=15.2
Q ss_pred ceeecCCCCCccchhhHHHH
Q 039247 149 KLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 149 ~v~~lp~C~H~FH~~CI~~W 168 (365)
.....+.|+|.|+..|-..|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34445469999999998888
No 218
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.51 E-value=1.8e+02 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 039247 49 IIVILAVLFFISGLLHLLVRFLVKH 73 (365)
Q Consensus 49 IIvILavv~~i~~ll~llvr~l~rr 73 (365)
.++-++++|++.+++.+++..+.+-
T Consensus 8 ~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555544
No 219
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=22.42 E-value=1.2e+02 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039247 38 SGTRISPAVLFIIVILAVLFFISGLLHLLVRFLVKHPS 75 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~i~~ll~llvr~l~rrr~ 75 (365)
+-..+.++++.||+..++++++..+...++-++.|.+-
T Consensus 8 svqplp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 8 SVQPLPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred ccCCCCceeeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 44458888888888777776665555455555555443
No 220
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.37 E-value=15 Score=35.87 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCCcCccccCcccCCCceeecC--CCCCccchhhHHHHHhcCCCCCcccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLP--MCSHAFHINCIDTWLLSNSTCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp--~C~H~FH~~CI~~Wl~~~~sCPlCR~ 180 (365)
....|+||-..-.-.. ++.-. .-.|.+|.-|-..|-..+..||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3468999976632210 11110 12367888899999888889999955
No 221
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=22.28 E-value=90 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCC
Q 039247 41 RISPAVLFIIVILAVLFFISGLL---HLLVRFLVKHP 74 (365)
Q Consensus 41 ~isp~iliIIvILavv~~i~~ll---~llvr~l~rrr 74 (365)
.++-..+++++++++++|+++++ .-++|+-.|.+
T Consensus 7 ~lsGv~vvlv~a~g~l~~vllfIfaKRQI~Rf~lrsr 43 (186)
T PF07406_consen 7 WLSGVNVVLVIAYGSLVFVLLFIFAKRQIMRFALRSR 43 (186)
T ss_pred cccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444444433333 33455555543
No 222
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.96 E-value=68 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=18.2
Q ss_pred CCCcCccccCcccC-CCceeecCCCCCccchh
Q 039247 133 EPFDCAVCLCEFSE-KDKLRLLPMCSHAFHIN 163 (365)
Q Consensus 133 ~~~~CaICl~~f~~-~~~v~~lp~C~H~FH~~ 163 (365)
....|+-|-..|.. +...++.|.||..|...
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 34568777777765 22344556666666644
No 223
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.77 E-value=47 Score=25.27 Aligned_cols=13 Identities=31% Similarity=1.117 Sum_probs=10.1
Q ss_pred CCCCCcccccccC
Q 039247 172 NSTCPLCRDTLFT 184 (365)
Q Consensus 172 ~~sCPlCR~~l~~ 184 (365)
.+.||+|.+++..
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4579999998754
No 224
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.76 E-value=94 Score=30.92 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039247 49 IIVILAVLFFISGLL 63 (365)
Q Consensus 49 IIvILavv~~i~~ll 63 (365)
|+.+++++++|++++
T Consensus 258 I~aSiiaIliIVLIM 272 (299)
T PF02009_consen 258 IIASIIAILIIVLIM 272 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444443333333
No 225
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=21.64 E-value=2.7e+02 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039247 49 IIVILAVLFFISGLLHLLVRFLVKHPS 75 (365)
Q Consensus 49 IIvILavv~~i~~ll~llvr~l~rrr~ 75 (365)
++-++++++++++++.++++|+.||.+
T Consensus 68 l~qmi~aL~~VI~Liy~l~rwL~rR~~ 94 (219)
T PRK13415 68 FVKLIGATLFVIFLIYALVKWLNKRNR 94 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445555666666777777643
No 226
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.52 E-value=61 Score=30.91 Aligned_cols=26 Identities=19% Similarity=0.624 Sum_probs=18.6
Q ss_pred CcCccccCcccCCCceeecCCCCCccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFH 161 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH 161 (365)
..|++|...+...+.-...+ ++|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 47999999997655544444 678773
No 227
>PF15106 TMEM156: TMEM156 protein family
Probab=21.44 E-value=1.2e+02 Score=28.83 Aligned_cols=20 Identities=20% Similarity=0.549 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039247 45 AVLFIIVILAVLFFISGLLH 64 (365)
Q Consensus 45 ~iliIIvILavv~~i~~ll~ 64 (365)
+.++++++|+.+|+|+++++
T Consensus 176 ITWYvLVllVfiflii~iI~ 195 (226)
T PF15106_consen 176 ITWYVLVLLVFIFLIILIIY 195 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555544454444333
No 228
>PF15102 TMEM154: TMEM154 protein family
Probab=21.35 E-value=40 Score=30.15 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.3
Q ss_pred HHHHHHhhCCC
Q 039247 65 LLVRFLVKHPS 75 (365)
Q Consensus 65 llvr~l~rrr~ 75 (365)
+++.+++|+|.
T Consensus 77 ~lv~~~kRkr~ 87 (146)
T PF15102_consen 77 CLVIYYKRKRT 87 (146)
T ss_pred HheeEEeeccc
Confidence 33333334433
No 229
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.06 E-value=47 Score=34.99 Aligned_cols=49 Identities=18% Similarity=0.540 Sum_probs=32.3
Q ss_pred CCcCccccCccc-CCCceeecCCCCCccchhhHHHHHhc--------CCCCCcccccc
Q 039247 134 PFDCAVCLCEFS-EKDKLRLLPMCSHAFHINCIDTWLLS--------NSTCPLCRDTL 182 (365)
Q Consensus 134 ~~~CaICl~~f~-~~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~sCPlCR~~l 182 (365)
...|.+|++-.. ..+++.....|+-.||..|-..-... ...|=+|....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 345999995433 34455566679999999998664421 11388887743
No 230
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.81 E-value=36 Score=38.26 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=30.1
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhc------CCCCCccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS------NSTCPLCRDT 181 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~------~~sCPlCR~~ 181 (365)
..|..|...... ..-+.+.|+|.+|.+|+..|.-. ...|++|+..
T Consensus 230 ~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 230 EMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred hhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 468888765332 24456679999999999999511 1237776654
No 231
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=20.57 E-value=1.2e+02 Score=28.63 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 039247 46 VLFIIVILA 54 (365)
Q Consensus 46 iliIIvILa 54 (365)
++|.|++.+
T Consensus 101 ~lI~lv~~g 109 (202)
T PF06365_consen 101 TLIALVTSG 109 (202)
T ss_pred EEEehHHhh
Confidence 444444444
No 232
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.47 E-value=74 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=17.5
Q ss_pred ecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 152 LLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 152 ~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
..|+|+|.. .-|.+...|+.|++++.-+
T Consensus 71 ~CP~C~K~T------KmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 71 ECPNCGKQT------KMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred ECCCCCChH------hhhchhhccCcCCCcCccC
Confidence 345577642 2234456799999998543
No 233
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.41 E-value=83 Score=27.60 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=10.8
Q ss_pred CCCCcccccccCCC
Q 039247 173 STCPLCRDTLFTPG 186 (365)
Q Consensus 173 ~sCPlCR~~l~~~~ 186 (365)
..||.|...|...+
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 57999999886543
Done!